Query 023378
Match_columns 283
No_of_seqs 107 out of 127
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 03:35:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05637 Glyco_transf_34: gala 42.9 29 0.00062 31.9 3.6 37 137-174 58-94 (239)
2 cd06437 CESA_CaSu_A2 Cellulose 33.5 40 0.00087 29.1 2.9 26 142-169 75-100 (232)
3 PF01501 Glyco_transf_8: Glyco 29.3 45 0.00097 28.7 2.4 32 155-186 97-131 (250)
4 cd04191 Glucan_BSP_ModH Glucan 28.7 55 0.0012 30.1 3.1 30 142-171 81-110 (254)
5 cd06434 GT2_HAS Hyaluronan syn 28.1 68 0.0015 27.3 3.4 28 142-171 65-92 (235)
6 PRK05454 glucosyltransferase M 26.8 56 0.0012 35.0 3.1 30 142-171 206-235 (691)
7 cd06439 CESA_like_1 CESA_like_ 25.8 68 0.0015 27.8 3.0 28 141-170 96-123 (251)
8 PRK11498 bcsA cellulose syntha 25.6 54 0.0012 36.0 2.8 26 142-169 327-352 (852)
9 cd06423 CESA_like CESA_like is 25.3 74 0.0016 24.4 2.9 26 142-169 66-91 (180)
10 PF13641 Glyco_tranf_2_3: Glyc 24.4 87 0.0019 26.6 3.4 27 141-169 73-99 (228)
11 cd04186 GT_2_like_c Subfamily 23.9 95 0.0021 24.3 3.3 26 142-169 62-87 (166)
12 cd06438 EpsO_like EpsO protein 23.5 78 0.0017 26.3 2.8 30 141-170 63-95 (183)
13 cd06421 CESA_CelA_like CESA_Ce 22.7 84 0.0018 26.6 2.9 25 143-169 73-97 (234)
14 PF04413 Glycos_transf_N: 3-De 22.1 73 0.0016 28.1 2.5 33 133-167 74-106 (186)
15 PF03407 Nucleotid_trans: Nucl 22.0 79 0.0017 27.5 2.6 29 141-173 54-82 (212)
16 TIGR03030 CelA cellulose synth 21.4 78 0.0017 33.6 2.9 27 142-170 216-242 (713)
17 PF07172 GRP: Glycine rich pro 20.3 88 0.0019 25.3 2.4 17 1-18 1-17 (95)
18 COG2945 Predicted hydrolase of 20.0 85 0.0018 29.2 2.5 33 140-174 162-194 (210)
No 1
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=42.95 E-value=29 Score=31.93 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=24.2
Q ss_pred ccccCchhHHHHHHHhcCCCccEEEEecCCeeeecCCC
Q 023378 137 YIVLNRPWAFVQWLEKADIKEEYILMAEPDHIIVKPIP 174 (283)
Q Consensus 137 Y~v~NKP~A~~qWL~~a~i~e~~IlmlDpD~I~~rPl~ 174 (283)
.....|+.++++-|++- ++.+||+-+|+|-||+.|=.
T Consensus 58 ~~~W~K~~~lr~~m~~~-P~~~wv~~lD~Dali~n~~~ 94 (239)
T PF05637_consen 58 PGSWAKIPALRAAMKKY-PEAEWVWWLDSDALIMNPDF 94 (239)
T ss_dssp HHHHTHHHHHHHHHHH--TT-SEEEEE-TTEEE-----
T ss_pred ChhhHHHHHHHHHHHhC-CCCCEEEEEcCCeEEEeccc
Confidence 34577999999988653 46899999999999999733
No 2
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=33.52 E-value=40 Score=29.09 Aligned_cols=26 Identities=23% Similarity=0.384 Sum_probs=22.1
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeee
Q 023378 142 RPWAFVQWLEKADIKEEYILMAEPDHII 169 (283)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~ 169 (283)
|+.|+..-++.+ +.+||+++|+|.++
T Consensus 75 k~~a~n~g~~~a--~~~~i~~~DaD~~~ 100 (232)
T cd06437 75 KAGALAEGMKVA--KGEYVAIFDADFVP 100 (232)
T ss_pred chHHHHHHHHhC--CCCEEEEEcCCCCC
Confidence 677788888776 67999999999987
No 3
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=29.27 E-value=45 Score=28.70 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=20.6
Q ss_pred CCccEEEEecCCeeeecCCCCC---CCCCcccccc
Q 023378 155 IKEEYILMAEPDHIIVKPIPNL---SKDGLGAAFP 186 (283)
Q Consensus 155 i~e~~IlmlDpD~I~~rPl~~l---a~~g~~~a~~ 186 (283)
.+.+-||.+|+|+|+++++..+ ..++...+..
T Consensus 97 ~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~ 131 (250)
T PF01501_consen 97 PDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAV 131 (250)
T ss_dssp TTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEE
T ss_pred hhcCeEEEEcCCeeeecChhhhhcccchhhhcccc
Confidence 4569999999999999998742 2335554443
No 4
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=28.69 E-value=55 Score=30.12 Aligned_cols=30 Identities=7% Similarity=0.296 Sum_probs=23.3
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeeec
Q 023378 142 RPWAFVQWLEKADIKEEYILMAEPDHIIVK 171 (283)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~r 171 (283)
|-.++...+++...+.+||+++|+|.+.-.
T Consensus 81 Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p 110 (254)
T cd04191 81 KAGNIADFCRRWGSRYDYMVVLDADSLMSG 110 (254)
T ss_pred cHHHHHHHHHHhCCCCCEEEEEeCCCCCCH
Confidence 566777777765567899999999998743
No 5
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=28.13 E-value=68 Score=27.33 Aligned_cols=28 Identities=7% Similarity=0.254 Sum_probs=23.2
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeeec
Q 023378 142 RPWAFVQWLEKADIKEEYILMAEPDHIIVK 171 (283)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~r 171 (283)
|..|+..-++.+ +.+||+++|+|-++-.
T Consensus 65 ~~~a~n~g~~~a--~~d~v~~lD~D~~~~~ 92 (235)
T cd06434 65 KRRALAEGIRHV--TTDIVVLLDSDTVWPP 92 (235)
T ss_pred hHHHHHHHHHHh--CCCEEEEECCCceeCh
Confidence 667888888876 6899999999999854
No 6
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=26.79 E-value=56 Score=34.96 Aligned_cols=30 Identities=7% Similarity=0.232 Sum_probs=26.1
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeeec
Q 023378 142 RPWAFVQWLEKADIKEEYILMAEPDHIIVK 171 (283)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~r 171 (283)
|-+.+.+|++...-+.|||+++|+|.++-+
T Consensus 206 KaGNl~~~~~~~~~~~eyivvLDADs~m~~ 235 (691)
T PRK05454 206 KAGNIADFCRRWGGAYDYMVVLDADSLMSG 235 (691)
T ss_pred cHHHHHHHHHhcCCCcCEEEEEcCCCCCCH
Confidence 778899999987778899999999999754
No 7
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=25.78 E-value=68 Score=27.79 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=23.8
Q ss_pred CchhHHHHHHHhcCCCccEEEEecCCeeee
Q 023378 141 NRPWAFVQWLEKADIKEEYILMAEPDHIIV 170 (283)
Q Consensus 141 NKP~A~~qWL~~a~i~e~~IlmlDpD~I~~ 170 (283)
++..|+.+-++++. .+||+++|+|.++-
T Consensus 96 g~~~a~n~gi~~a~--~d~i~~lD~D~~~~ 123 (251)
T cd06439 96 GKAAALNRALALAT--GEIVVFTDANALLD 123 (251)
T ss_pred ChHHHHHHHHHHcC--CCEEEEEccccCcC
Confidence 47788888888875 59999999999984
No 8
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=25.60 E-value=54 Score=36.04 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.9
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeee
Q 023378 142 RPWAFVQWLEKADIKEEYILMAEPDHII 169 (283)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~ 169 (283)
|.+++.+.++++ +.|||+++|+|++.
T Consensus 327 KAGnLN~aL~~a--~GEyIavlDAD~ip 352 (852)
T PRK11498 327 KAGNINNALKYA--KGEFVAIFDCDHVP 352 (852)
T ss_pred hHHHHHHHHHhC--CCCEEEEECCCCCC
Confidence 778899999986 67999999999995
No 9
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=25.33 E-value=74 Score=24.44 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=20.5
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeee
Q 023378 142 RPWAFVQWLEKADIKEEYILMAEPDHII 169 (283)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~ 169 (283)
+..|...-++.+ +.+||+++|+|.++
T Consensus 66 ~~~~~n~~~~~~--~~~~i~~~D~D~~~ 91 (180)
T cd06423 66 KAGALNAGLRHA--KGDIVVVLDADTIL 91 (180)
T ss_pred chHHHHHHHHhc--CCCEEEEECCCCCc
Confidence 456666667766 78999999999877
No 10
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=24.43 E-value=87 Score=26.61 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=19.0
Q ss_pred CchhHHHHHHHhcCCCccEEEEecCCeee
Q 023378 141 NRPWAFVQWLEKADIKEEYILMAEPDHII 169 (283)
Q Consensus 141 NKP~A~~qWL~~a~i~e~~IlmlDpD~I~ 169 (283)
.|..|+.+-++++. .+||+++|+|.++
T Consensus 73 ~k~~a~n~~~~~~~--~d~i~~lD~D~~~ 99 (228)
T PF13641_consen 73 GKARALNEALAAAR--GDYILFLDDDTVL 99 (228)
T ss_dssp HHHHHHHHHHHH-----SEEEEE-SSEEE
T ss_pred hHHHHHHHHHHhcC--CCEEEEECCCcEE
Confidence 46677777787764 8899999999887
No 11
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=23.89 E-value=95 Score=24.30 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=21.1
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeee
Q 023378 142 RPWAFVQWLEKADIKEEYILMAEPDHII 169 (283)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~ 169 (283)
+..|+..-++++ +.+||+++|.|.++
T Consensus 62 ~~~a~n~~~~~~--~~~~i~~~D~D~~~ 87 (166)
T cd04186 62 FGAGNNQGIREA--KGDYVLLLNPDTVV 87 (166)
T ss_pred hHHHhhHHHhhC--CCCEEEEECCCcEE
Confidence 456777777777 68999999999887
No 12
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=23.53 E-value=78 Score=26.34 Aligned_cols=30 Identities=7% Similarity=0.166 Sum_probs=23.4
Q ss_pred CchhHHHHHHHhc---CCCccEEEEecCCeeee
Q 023378 141 NRPWAFVQWLEKA---DIKEEYILMAEPDHIIV 170 (283)
Q Consensus 141 NKP~A~~qWL~~a---~i~e~~IlmlDpD~I~~ 170 (283)
.|.+|+.+=++++ .-+.+||+++|+|.+.-
T Consensus 63 gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~~~ 95 (183)
T cd06438 63 GKGYALDFGFRHLLNLADDPDAVVVFDADNLVD 95 (183)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCCC
Confidence 3677777777776 34689999999999873
No 13
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=22.74 E-value=84 Score=26.58 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=19.5
Q ss_pred hhHHHHHHHhcCCCccEEEEecCCeee
Q 023378 143 PWAFVQWLEKADIKEEYILMAEPDHII 169 (283)
Q Consensus 143 P~A~~qWL~~a~i~e~~IlmlDpD~I~ 169 (283)
..++.+-++++ +.+||+++|+|-++
T Consensus 73 ~~~~n~~~~~a--~~d~i~~lD~D~~~ 97 (234)
T cd06421 73 AGNLNNALAHT--TGDFVAILDADHVP 97 (234)
T ss_pred HHHHHHHHHhC--CCCEEEEEccccCc
Confidence 34466777766 68999999999777
No 14
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=22.13 E-value=73 Score=28.11 Aligned_cols=33 Identities=24% Similarity=0.563 Sum_probs=21.7
Q ss_pred CCCCccccCchhHHHHHHHhcCCCccEEEEecCCe
Q 023378 133 MDQGYIVLNRPWAFVQWLEKADIKEEYILMAEPDH 167 (283)
Q Consensus 133 ~dd~Y~v~NKP~A~~qWL~~a~i~e~~IlmlDpD~ 167 (283)
....|.++|-|++++.+|++..+ +.++++|+|.
T Consensus 74 v~~~~~P~D~~~~~~rfl~~~~P--~~~i~~EtEl 106 (186)
T PF04413_consen 74 VDVQYLPLDFPWAVRRFLDHWRP--DLLIWVETEL 106 (186)
T ss_dssp -SEEE---SSHHHHHHHHHHH----SEEEEES---
T ss_pred eEEEEeCccCHHHHHHHHHHhCC--CEEEEEcccc
Confidence 34579999999999999999988 7889999874
No 15
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=22.02 E-value=79 Score=27.48 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=21.0
Q ss_pred CchhHHHHHHHhcCCCccEEEEecCCeeeecCC
Q 023378 141 NRPWAFVQWLEKADIKEEYILMAEPDHIIVKPI 173 (283)
Q Consensus 141 NKP~A~~qWL~~a~i~e~~IlmlDpD~I~~rPl 173 (283)
.||..+.+=|+. .--|+++|+|.+|+|..
T Consensus 54 ~K~~~~~~~L~~----G~~vl~~D~Dvv~~~dp 82 (212)
T PF03407_consen 54 LKPKVLLDLLEL----GYDVLFSDADVVWLRDP 82 (212)
T ss_pred HHHHHHHHHHHc----CCceEEecCCEEEecCc
Confidence 466666666654 23489999999999943
No 16
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=21.36 E-value=78 Score=33.61 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.2
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeee
Q 023378 142 RPWAFVQWLEKADIKEEYILMAEPDHIIV 170 (283)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~ 170 (283)
|.+++.+.+++++ .|||+++|+|++..
T Consensus 216 KAgnLN~al~~a~--gd~Il~lDAD~v~~ 242 (713)
T TIGR03030 216 KAGNINNALKHTD--GELILIFDADHVPT 242 (713)
T ss_pred ChHHHHHHHHhcC--CCEEEEECCCCCcC
Confidence 6788999998864 58999999999974
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.30 E-value=88 Score=25.30 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=7.4
Q ss_pred CCCCchhHHHHHHHHHHH
Q 023378 1 MGCGHLFYSTLVTFSVAL 18 (283)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (283)
|+ .+.+|||.+.|++++
T Consensus 1 Ma-SK~~llL~l~LA~lL 17 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALL 17 (95)
T ss_pred Cc-hhHHHHHHHHHHHHH
Confidence 54 334444444444433
No 18
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=20.05 E-value=85 Score=29.17 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=28.0
Q ss_pred cCchhHHHHHHHhcCCCccEEEEecCCeeeecCCC
Q 023378 140 LNRPWAFVQWLEKADIKEEYILMAEPDHIIVKPIP 174 (283)
Q Consensus 140 ~NKP~A~~qWL~~a~i~e~~IlmlDpD~I~~rPl~ 174 (283)
-..+.++..|-+. ++.++|.+.|+||.|.+-+.
T Consensus 162 vv~l~~~l~~~~~--~~~~~i~i~~a~HFF~gKl~ 194 (210)
T COG2945 162 VVDLVAVLKWQES--IKITVITIPGADHFFHGKLI 194 (210)
T ss_pred hhcHHHHHHhhcC--CCCceEEecCCCceecccHH
Confidence 3468888999888 88999999999999987654
Done!