Query 023378
Match_columns 283
No_of_seqs 107 out of 127
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 05:46:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ffy_A Putative tetrapyrrole ( 20.0 73 0.0025 24.7 3.1 43 121-165 70-112 (115)
2 2l9a_X LAK160-P12; cationic, p 17.8 26 0.00088 21.1 -0.1 17 228-244 7-23 (26)
3 4hg6_A Cellulose synthase subu 12.3 1.4E+02 0.0046 30.5 3.5 26 142-169 226-251 (802)
4 1ll2_A Glycogenin-1; protein-s 12.1 1E+02 0.0036 28.1 2.4 21 156-176 94-114 (333)
5 1g9r_A Glycosyl transferase; a 10.9 1.1E+02 0.0037 27.2 2.0 21 156-176 95-115 (311)
6 1qg8_A Protein (spore coat pol 10.0 2.3E+02 0.0079 23.0 3.6 26 142-169 76-101 (255)
7 3ulb_A Target of rapamycin com 9.8 1.5E+02 0.0051 24.2 2.3 39 156-194 27-68 (121)
8 2bog_X Endoglucanase E-2; hydr 9.5 3.5E+02 0.012 24.8 4.9 48 120-168 66-119 (286)
9 3bcv_A Putative glycosyltransf 9.4 2E+02 0.0067 23.1 3.0 26 142-169 72-97 (240)
10 3j1r_A Archaeal adhesion filam 9.0 2.5E+02 0.0087 17.1 2.5 18 6-23 7-24 (26)
No 1
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=20.04 E-value=73 Score=24.70 Aligned_cols=43 Identities=7% Similarity=0.085 Sum_probs=28.8
Q ss_pred CCceEeCCCCCCCCCCccccCchhHHHHHHHhcCCCccEEEEecC
Q 023378 121 IPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADIKEEYILMAEP 165 (283)
Q Consensus 121 iPT~vv~pl~~~~dd~Y~v~NKP~A~~qWL~~a~i~e~~IlmlDp 165 (283)
-|-+++.-+... ..-...-.-.-+.+|++...++.++||++++
T Consensus 70 ~~v~v~relTk~--~E~~~rgtl~el~~~~~~~~~kGe~vivv~~ 112 (115)
T 3ffy_A 70 RQVSVSREISKI--HEETVRGTLSELIEHFTATDPRGEIVIVLAG 112 (115)
T ss_dssp CEEEEEEESSSS--CEEEEEEEHHHHHHHHHHSCCCSSEEEEECC
T ss_pred CEEEeeeccCCC--ceEEEEeeHHHHHHHHHhcCCCCCEEEEEeC
Confidence 344444444321 2234445667789999998999999999985
No 2
>2l9a_X LAK160-P12; cationic, proline, ampiphatic, de novo protein, antimicrobia; NMR {Synthetic construct}
Probab=17.77 E-value=26 Score=21.14 Aligned_cols=17 Identities=47% Similarity=0.972 Sum_probs=14.1
Q ss_pred HhhhhHHHHHhhhhhcc
Q 023378 228 LKKIAPVWMNVSLAMKK 244 (283)
Q Consensus 228 L~~iAP~W~~~t~~v~~ 244 (283)
|.++||+|-.+..+.+.
T Consensus 7 laklaplwkalalklkk 23 (26)
T 2l9a_X 7 LAKLAPLWKALALKLKK 23 (26)
T ss_dssp SSSSCTHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHh
Confidence 57899999999887764
No 3
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=12.28 E-value=1.4e+02 Score=30.52 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.7
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeee
Q 023378 142 RPWAFVQWLEKADIKEEYILMAEPDHII 169 (283)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~ 169 (283)
|..|+.+-++++ +.|||+++|+|.++
T Consensus 226 Ka~alN~gl~~a--~gd~Il~lDaD~~~ 251 (802)
T 4hg6_A 226 KAGNMSAALERL--KGELVVVFDADHVP 251 (802)
T ss_dssp HHHHHHHHHHHC--CCSEEEECCTTEEE
T ss_pred chHHHHHHHHhc--CCCEEEEECCCCCc
Confidence 777888888887 57999999999987
No 4
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=12.11 E-value=1e+02 Score=28.08 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=18.3
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 023378 156 KEEYILMAEPDHIIVKPIPNL 176 (283)
Q Consensus 156 ~e~~IlmlDpD~I~~rPl~~l 176 (283)
+-+-||-||+|+|+++++..+
T Consensus 94 ~ydrvlYLDaD~lv~~di~eL 114 (333)
T 1ll2_A 94 QYSKCVFMDADTLVLANIDDL 114 (333)
T ss_dssp TCSEEEEECTTEEECSCCGGG
T ss_pred CCCeEEEEeCCEEeccCHHHH
Confidence 458999999999999998764
No 5
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=10.89 E-value=1.1e+02 Score=27.18 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=18.1
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 023378 156 KEEYILMAEPDHIIVKPIPNL 176 (283)
Q Consensus 156 ~e~~IlmlDpD~I~~rPl~~l 176 (283)
+-+-||-+|+|+|+++.+..+
T Consensus 95 ~~~kvlyLD~D~iv~~di~eL 115 (311)
T 1g9r_A 95 DCDKVLYLDIDVLVRDSLTPL 115 (311)
T ss_dssp SCSCEEEECSSEEECSCCHHH
T ss_pred hcCEEEEEcCCeEeccCHHHH
Confidence 458899999999999998753
No 6
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=9.98 E-value=2.3e+02 Score=23.00 Aligned_cols=26 Identities=35% Similarity=0.310 Sum_probs=19.7
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeee
Q 023378 142 RPWAFVQWLEKADIKEEYILMAEPDHII 169 (283)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~ 169 (283)
+..|...=++++ +.+||+++|+|-++
T Consensus 76 ~~~a~N~gi~~a--~g~~i~~lD~Dd~~ 101 (255)
T 1qg8_A 76 YAALINQAIEMA--EGEYITYATDDNIY 101 (255)
T ss_dssp HHHHHHHHHHHC--CCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHc--CCCEEEEeCCCCcc
Confidence 344555556666 67999999999987
No 7
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=9.76 E-value=1.5e+02 Score=24.16 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=29.0
Q ss_pred CccEEEEecCCeeeecCCCC---CCCCCccccccceeecCcc
Q 023378 156 KEEYILMAEPDHIIVKPIPN---LSKDGLGAAFPFFYIEPKK 194 (283)
Q Consensus 156 ~e~~IlmlDpD~I~~rPl~~---la~~g~~~a~~f~Yi~p~~ 194 (283)
+.|=+|.||.|+|-+-|-.. +-..|....+.|.=|++.+
T Consensus 27 ~~ER~L~IDGdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~K 68 (121)
T 3ulb_A 27 KHERTLAIDGDYIYIVPPEGRIHWHDNVKTKSLHISQVVLVK 68 (121)
T ss_dssp EEEEEEEEETTEEEEECCC-------CCCCEEEEGGGEEEEE
T ss_pred cccEEEEEcCceEEEecCCCCcccccCCcEEEEEEeeEEEEE
Confidence 36778999999999999753 3346788888888888853
No 8
>2bog_X Endoglucanase E-2; hydrolase, thermobifida fusca, TIM A/B fold, glycoside hydrolase family 6; HET: MGL SGC BGC; 1.04A {Thermomonospora fusca} PDB: 2bof_X* 2boe_X* 2bod_X* 1tml_A* 3ru8_X 3rpt_X
Probab=9.48 E-value=3.5e+02 Score=24.83 Aligned_cols=48 Identities=19% Similarity=0.402 Sum_probs=31.8
Q ss_pred CCCceEeCCCCCC-CCCCccc--cCchhHHHHHHHhc--CC-CccEEEEecCCee
Q 023378 120 EIPTFIAQPLPAG-MDQGYIV--LNRPWAFVQWLEKA--DI-KEEYILMAEPDHI 168 (283)
Q Consensus 120 eiPT~vv~pl~~~-~dd~Y~v--~NKP~A~~qWL~~a--~i-~e~~IlmlDpD~I 168 (283)
.+|.+|+--+|.. | -.|+. ..-...-+.|++.- .+ +...|++||||=|
T Consensus 66 ~~pvlVvY~lP~RDC-a~aS~Gg~~~~~~Yk~~Id~ia~~i~~~~~vvIlEPDsL 119 (286)
T 2bog_X 66 KIPILVVSNAPGRDC-GNHSSGGAPSHSAYRSWIDEFAAGLKNRPAYIIVEPDLI 119 (286)
T ss_dssp CBCEEEECCCSCSCC-C------CSSHHHHHHHHHHHHHTTTTCCCEEEECTTHH
T ss_pred CceEEEEeCCCCCCc-ccccCCCCCCHHHHHHHHHHHHHHhCCCceEEEECcCch
Confidence 4788999888753 4 23332 23366778999882 34 3579999999987
No 9
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=9.44 E-value=2e+02 Score=23.11 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=19.6
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeee
Q 023378 142 RPWAFVQWLEKADIKEEYILMAEPDHII 169 (283)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~ 169 (283)
...|...=++++ +.+||+++|+|-++
T Consensus 72 ~~~a~N~g~~~a--~g~~i~~lD~Dd~~ 97 (240)
T 3bcv_A 72 LGMACNSGLDVA--TGEYVAFCDSDDYV 97 (240)
T ss_dssp HHHHHHHHHHHC--CSSEEEECCTTCCC
T ss_pred hHHHHHHHHHHc--CCCEEEEECCCCcC
Confidence 455666666666 57999999999775
No 10
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=8.96 E-value=2.5e+02 Score=17.07 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 023378 6 LFYSTLVTFSVALITYNI 23 (283)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (283)
..+|++++.+.+.+.|--
T Consensus 7 ~~lLIviav~aaVllylW 24 (26)
T 3j1r_A 7 TLLLILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356788888888887743
Done!