Query 023378
Match_columns 283
No_of_seqs 107 out of 127
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 05:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023378.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023378hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ll2a_ c.68.1.14 (A:) Glycoge 24.3 17 0.0012 29.1 2.3 22 155-176 93-114 (263)
2 d1ga8a_ c.68.1.4 (A:) Galactos 17.9 26 0.0019 28.2 2.1 21 156-176 95-115 (282)
3 d1omza_ c.68.1.15 (A:) Alpha-1 15.5 36 0.0026 24.6 2.2 15 155-169 80-94 (265)
4 d1z8ua1 a.7.11.1 (A:2-91) Alph 14.4 33 0.0024 24.7 1.6 21 220-240 28-48 (90)
5 d1o7qa_ c.68.1.9 (A:) alpha-1, 11.7 46 0.0034 28.6 2.0 38 138-175 117-155 (287)
6 d1lzia_ c.68.1.9 (A:) Glycosyl 11.6 47 0.0034 28.5 2.0 20 156-175 141-160 (283)
7 d1w77a1 c.68.1.13 (A:75-300) 4 11.5 57 0.0042 25.1 2.4 31 142-172 83-113 (226)
8 d1vioa1 d.265.1.3 (A:58-231) R 10.4 18 0.0013 27.8 -1.1 14 134-147 2-15 (174)
9 d1rrpb_ b.55.1.3 (B:) Nuclear 9.1 33 0.0024 25.5 0.0 32 45-80 2-33 (134)
10 d1gd8a_ d.188.1.1 (A:) Prokary 8.8 61 0.0044 23.7 1.5 13 99-111 75-87 (105)
No 1
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=24.34 E-value=17 Score=29.10 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=19.1
Q ss_pred CCccEEEEecCCeeeecCCCCC
Q 023378 155 IKEEYILMAEPDHIIVKPIPNL 176 (283)
Q Consensus 155 i~e~~IlmlDpD~I~~rPl~~l 176 (283)
.+.|-||-||+|+|+++++..+
T Consensus 93 ~~ydkvlYLDaD~lv~~~id~L 114 (263)
T d1ll2a_ 93 TQYSKCVFMDADTLVLANIDDL 114 (263)
T ss_dssp TTCSEEEEECTTEEECSCCGGG
T ss_pred cccceEEEeCCCEEEecCHHHH
Confidence 3568999999999999999864
No 2
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=17.89 E-value=26 Score=28.24 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=17.6
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 023378 156 KEEYILMAEPDHIIVKPIPNL 176 (283)
Q Consensus 156 ~e~~IlmlDpD~I~~rPl~~l 176 (283)
+-+-||-+|+|+|+++++..+
T Consensus 95 ~~~kiiyLD~D~iv~~dl~~L 115 (282)
T d1ga8a_ 95 DCDKVLYLDIDVLVRDSLTPL 115 (282)
T ss_dssp SCSCEEEECSSEEECSCCHHH
T ss_pred ccceEEEecCCEEEecchHHH
Confidence 346799999999999998753
No 3
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.46 E-value=36 Score=24.58 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=13.3
Q ss_pred CCccEEEEecCCeee
Q 023378 155 IKEEYILMAEPDHII 169 (283)
Q Consensus 155 i~e~~IlmlDpD~I~ 169 (283)
.+.|||+.+|+|-++
T Consensus 80 a~ge~i~~lD~D~~~ 94 (265)
T d1omza_ 80 VETNAVLMVDDDTLI 94 (265)
T ss_dssp CCSSEEEEECTTEEE
T ss_pred CCcCEEEEeCcccCC
Confidence 378999999999887
No 4
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.38 E-value=33 Score=24.74 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=17.8
Q ss_pred cEEEeHhHHhhhhHHHHHhhh
Q 023378 220 PVVVGRDSLKKIAPVWMNVSL 240 (283)
Q Consensus 220 P~im~~~DL~~iAP~W~~~t~ 240 (283)
+-+|..+||.-|..+|.++-.
T Consensus 28 ~~~iseedMvtvV~DWvn~Yi 48 (90)
T d1z8ua1 28 DALVSEEDMVTVVEDWMNFYI 48 (90)
T ss_dssp GCCCCHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 455999999999999999654
No 5
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.71 E-value=46 Score=28.58 Aligned_cols=38 Identities=8% Similarity=0.111 Sum_probs=24.6
Q ss_pred cccCchhHHHHHHHhcCC-CccEEEEecCCeeeecCCCC
Q 023378 138 IVLNRPWAFVQWLEKADI-KEEYILMAEPDHIIVKPIPN 175 (283)
Q Consensus 138 ~v~NKP~A~~qWL~~a~i-~e~~IlmlDpD~I~~rPl~~ 175 (283)
+-+-|=.-|.+-+++... +.||++-+|+||+|..++..
T Consensus 117 iTL~Rm~~i~~~i~~~~~~e~Dylf~~DaDm~f~~~vg~ 155 (287)
T d1o7qa_ 117 ISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGV 155 (287)
T ss_dssp HHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCBCG
T ss_pred hHHHHHHHHHHHHHHhhhccCCeEEEEeCCceEeccccc
Confidence 333343333333333333 45999999999999999875
No 6
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.59 E-value=47 Score=28.47 Aligned_cols=20 Identities=10% Similarity=0.217 Sum_probs=18.2
Q ss_pred CccEEEEecCCeeeecCCCC
Q 023378 156 KEEYILMAEPDHIIVKPIPN 175 (283)
Q Consensus 156 ~e~~IlmlDpD~I~~rPl~~ 175 (283)
+.||++-+|+||+|..++..
T Consensus 141 e~DyLf~~DaDm~f~~~vg~ 160 (283)
T d1lzia_ 141 EVDYLVCVDVDMEFRDHVGV 160 (283)
T ss_dssp HCSEEEEECSSEEECSCBCG
T ss_pred cCCEEEEeecceEEeccccc
Confidence 46999999999999999886
No 7
>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
Probab=11.50 E-value=57 Score=25.11 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=25.7
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeeecC
Q 023378 142 RPWAFVQWLEKADIKEEYILMAEPDHIIVKP 172 (283)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~rP 172 (283)
|-.++.+.|++...+.++|++.|+|.-|+.+
T Consensus 83 r~~sv~~~l~~~~~~~~~Vli~d~~~P~i~~ 113 (226)
T d1w77a1 83 RQDSVYSGLQEIDVNSELVCIHDSARPLVNT 113 (226)
T ss_dssp HHHHHHHHHHTSCTTCSEEEEEETTCTTCCH
T ss_pred hhhhhhhhHhhhccccccceecccccccccH
Confidence 5678999999988888999999998766543
No 8
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Probab=10.38 E-value=18 Score=27.75 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=11.9
Q ss_pred CCCccccCchhHHH
Q 023378 134 DQGYIVLNRPWAFV 147 (283)
Q Consensus 134 dd~Y~v~NKP~A~~ 147 (283)
++.|.++|||.++.
T Consensus 2 ~~~Yi~lNKP~G~~ 15 (174)
T d1vioa1 2 EGQYFMLNKPQGCV 15 (174)
T ss_dssp CCCEEEEEECTTCB
T ss_pred CCEEEEEECCCCEE
Confidence 46799999999974
No 9
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.11 E-value=33 Score=25.45 Aligned_cols=32 Identities=13% Similarity=0.282 Sum_probs=21.9
Q ss_pred CCcccccchhhhhccCCCCCCCceEEEEeccCCCcc
Q 023378 45 VDPVIEMPLERSRRHGAAANKRLFHTAMTASDSVYN 80 (283)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~H~vfSt~cs~Y~ 80 (283)
|.|++.||.+....+|. ..=.++|+.-|..|.
T Consensus 2 f~p~~~l~~~v~~~tgE----E~E~~if~~r~KL~~ 33 (134)
T d1rrpb_ 2 FEPVVPLPDKIEVKTGE----EDEEEFFCNRAKLFR 33 (134)
T ss_dssp CCCSSCCCCCCCCCCSC----CSEEEEEEEEEEEEE
T ss_pred ccCcccCCCccceecCc----cCcEEEEEEeeEEEE
Confidence 57999999876653332 224778888887763
No 10
>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]}
Probab=8.80 E-value=61 Score=23.72 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=10.8
Q ss_pred CCCCcCceEEecc
Q 023378 99 NSEMGGFTRILHS 111 (283)
Q Consensus 99 ggq~G~fTRILh~ 111 (283)
.+..|++|||+..
T Consensus 75 ~~R~GGYTRI~kl 87 (105)
T d1gd8a_ 75 RDRQGGYTRVLKL 87 (105)
T ss_dssp SSCCSCCEEEEEE
T ss_pred hcCCCCeEEEEec
Confidence 3689999999974
Done!