BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023379
(283 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224058567|ref|XP_002299546.1| predicted protein [Populus trichocarpa]
gi|222846804|gb|EEE84351.1| predicted protein [Populus trichocarpa]
Length = 284
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/287 (80%), Positives = 252/287 (87%), Gaps = 8/287 (2%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIA----AKSGASRATTTSRPTPAAASTAARS-SPPVK 55
MALQE+LDRFKKQQEKCQ TL++IA +KS ++ T P P ST+AR+ +P VK
Sbjct: 1 MALQEQLDRFKKQQEKCQSTLTSIAKSRPSKSSLTQKTVAVAPAP---STSARTPAPAVK 57
Query: 56 FSNDTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSL 115
FSNDTERLQHINSIRK+P GAQIKRVID LLETRQAFTPE+IN CYVD+N+NKAVFDSL
Sbjct: 58 FSNDTERLQHINSIRKAPAGAQIKRVIDLLLETRQAFTPEQINDHCYVDMNSNKAVFDSL 117
Query: 116 RNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAA 175
RNNPKVHYDGKRFSYKSKHDLKDKSQLLVL+RKFPEGIAVIDLKDSYP+VM+DLQALKA
Sbjct: 118 RNNPKVHYDGKRFSYKSKHDLKDKSQLLVLIRKFPEGIAVIDLKDSYPSVMDDLQALKAV 177
Query: 176 GQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT 235
GQIWLLSNFDSQEDIAYPNDPR+ IK DDDLK LFR I LP DMLDIEKDLQKNGMKPAT
Sbjct: 178 GQIWLLSNFDSQEDIAYPNDPRMVIKVDDDLKQLFRGIELPRDMLDIEKDLQKNGMKPAT 237
Query: 236 NTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNG 282
NT KRRAAAQ+QGIS+K K KKKKHEISKRTKLTNAHLPELF+ L
Sbjct: 238 NTAKRRAAAQVQGISTKQKAKKKKHEISKRTKLTNAHLPELFKNLGS 284
>gi|225426874|ref|XP_002283557.1| PREDICTED: general transcription factor IIE subunit 2 [Vitis
vinifera]
gi|297742556|emb|CBI34705.3| unnamed protein product [Vitis vinifera]
Length = 285
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/280 (82%), Positives = 249/280 (88%), Gaps = 2/280 (0%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MALQE L +FKKQQEKCQ TL++IAAK+G+S+ T + TPAA + + VKFSNDT
Sbjct: 1 MALQESLAKFKKQQEKCQSTLTSIAAKAGSSKPTVPQKFTPAAPTKPPTPA--VKFSNDT 58
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQHINSIRK+PVGAQIKRVID LLETRQAFTPE+IN CYVD NANKAVFDSLRNNPK
Sbjct: 59 ERLQHINSIRKAPVGAQIKRVIDLLLETRQAFTPEQINEACYVDTNANKAVFDSLRNNPK 118
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
V YDGKRF+YKSKHDLKD+SQLLVLVRKFPEGIAVIDLKDSYP+VMEDLQALKAAGQ+WL
Sbjct: 119 VSYDGKRFAYKSKHDLKDRSQLLVLVRKFPEGIAVIDLKDSYPSVMEDLQALKAAGQVWL 178
Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
LSNFDSQEDIAYPNDPRVPIK DDDLK FR I LP DMLDIEKDLQKNGMKPATNT KR
Sbjct: 179 LSNFDSQEDIAYPNDPRVPIKVDDDLKQFFRTIELPRDMLDIEKDLQKNGMKPATNTAKR 238
Query: 241 RAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKL 280
RA AQ+ GI+SK+KPKKKKHEISKRTKLTNAHLPELFQ L
Sbjct: 239 RAMAQVHGIASKSKPKKKKHEISKRTKLTNAHLPELFQNL 278
>gi|449457584|ref|XP_004146528.1| PREDICTED: general transcription factor IIE subunit 2-like [Cucumis
sativus]
gi|449499921|ref|XP_004160955.1| PREDICTED: general transcription factor IIE subunit 2-like [Cucumis
sativus]
Length = 277
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/278 (80%), Positives = 244/278 (87%), Gaps = 2/278 (0%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MALQE+LDRFKKQQE+CQ TLS IAA S++T P PAA S A +P VKFSNDT
Sbjct: 1 MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAA-SIARPPAPAVKFSNDT 59
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQHINSIRKSPVGAQIKRVID LLETRQAFTPE+IN CYVD+N+NKAV+DSLRNNPK
Sbjct: 60 ERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPK 119
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
VHYDG+RFSYKSKHDLKDK+QLL LVRKFPEGIAVIDLKD+YP+VMEDLQALKA+GQ+WL
Sbjct: 120 VHYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWL 179
Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
LSNFDSQEDIAYPNDPR+ IK DDDLK LFR+I LP DMLD+EKDLQKNGMKPATNT KR
Sbjct: 180 LSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKR 239
Query: 241 RAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
RA AQ SSK KPKKKK EISKRTKLTNAHLPELF+
Sbjct: 240 RANAQ-HVASSKPKPKKKKQEISKRTKLTNAHLPELFK 276
>gi|255537377|ref|XP_002509755.1| Transcription initiation factor IIE subunit beta, putative [Ricinus
communis]
gi|223549654|gb|EEF51142.1| Transcription initiation factor IIE subunit beta, putative [Ricinus
communis]
Length = 282
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/283 (76%), Positives = 243/283 (85%), Gaps = 6/283 (2%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSR---PTPAAASTAARSSPPVKFS 57
M LQE+L++FK+QQEKCQ TL++IAAK+G+ + + T + P+P T P VKFS
Sbjct: 1 MDLQEQLNKFKRQQEKCQTTLTSIAAKAGSHKPSITPKIVAPSPIIPRTPG---PAVKFS 57
Query: 58 NDTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRN 117
NDTERLQHI+SIRK+PVGAQIKRVID L ETRQAFTPE+IN CYVDVN+NKAVFDSLRN
Sbjct: 58 NDTERLQHIHSIRKAPVGAQIKRVIDLLFETRQAFTPEQINEACYVDVNSNKAVFDSLRN 117
Query: 118 NPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQ 177
NPKVHYDG+ FSYKSKHDLKDK QLL L+R+F EGIAVIDLKD+YPTVMEDLQALKAAG
Sbjct: 118 NPKVHYDGRHFSYKSKHDLKDKKQLLYLIREFKEGIAVIDLKDAYPTVMEDLQALKAAGG 177
Query: 178 IWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNT 237
IWLLSNFDSQEDIAYPNDP+ IK DD+LK+ FR+I LP DMLDIEKDLQKNGMKPATNT
Sbjct: 178 IWLLSNFDSQEDIAYPNDPKAVIKVDDELKVKFREIELPRDMLDIEKDLQKNGMKPATNT 237
Query: 238 QKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKL 280
KRRAAAQ+QGIS+K K KKK EISK+TKLTNAHLPELFQ L
Sbjct: 238 AKRRAAAQVQGISTKPKTKKKTKEISKKTKLTNAHLPELFQNL 280
>gi|357481679|ref|XP_003611125.1| General transcription factor IIE subunit [Medicago truncatula]
gi|355512460|gb|AES94083.1| General transcription factor IIE subunit [Medicago truncatula]
gi|388501522|gb|AFK38827.1| unknown [Medicago truncatula]
Length = 270
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/283 (74%), Positives = 236/283 (83%), Gaps = 13/283 (4%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MALQ KLDRFKKQQEKCQ TLS+IAA ++A + S P A PVKFS DT
Sbjct: 1 MALQGKLDRFKKQQEKCQSTLSSIAA----NKAVSASVPNALA---------PVKFSTDT 47
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQHINSIRK+PVGAQ+KRVID L ETRQA T E+IN C+VD+ ANK VFD++R NPK
Sbjct: 48 ERLQHINSIRKAPVGAQMKRVIDLLFETRQALTLEQINETCHVDMKANKDVFDNMRKNPK 107
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
V YDG+RFSYKSKH L+DK +LL L+RKFPEGIAVIDLKDSYPTVMEDLQALK +IWL
Sbjct: 108 VRYDGERFSYKSKHALRDKKELLFLIRKFPEGIAVIDLKDSYPTVMEDLQALKGGREIWL 167
Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
LSNFDSQEDIAYPNDP+VPIK DDDLK LFR I LP DM+DIE+DLQKNGMKPATNT KR
Sbjct: 168 LSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKR 227
Query: 241 RAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNGS 283
R+AAQ++GISSK KPKKKK+EI+KRTKLTNAHLPELFQ LN S
Sbjct: 228 RSAAQMEGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLNNS 270
>gi|388499682|gb|AFK37907.1| unknown [Medicago truncatula]
Length = 282
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/281 (72%), Positives = 232/281 (82%), Gaps = 1/281 (0%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MALQE+LDRFKKQQEKCQ TLS+IA+ SR T A++ S VKFS+DT
Sbjct: 1 MALQEQLDRFKKQQEKCQSTLSSIASSKVGSRKPNTPVVATNASANGRNSRTGVKFSSDT 60
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQ IN+IRK+PVGAQ+KRVID LLETRQAFTPE+IN CYVD+ ANK VF SLR NPK
Sbjct: 61 ERLQQINNIRKAPVGAQMKRVIDLLLETRQAFTPEQINEACYVDMRANKDVFGSLRKNPK 120
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
V YDG+RFSYK+K+ LK+KS+LL L+R++PEG+AV DLKD+YP VMEDLQALKAAGQIWL
Sbjct: 121 VEYDGQRFSYKAKYGLKEKSELLQLIRRYPEGLAVFDLKDAYPNVMEDLQALKAAGQIWL 180
Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
LSNFDSQ+DI YPNDP+ IK DDDLK LFR I LP DM+DIEKDLQKNGMKPATNT KR
Sbjct: 181 LSNFDSQDDITYPNDPKANIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAKR 240
Query: 241 RAAAQIQGISSKNKPK-KKKHEISKRTKLTNAHLPELFQKL 280
R+AAQI G+SSK K +KK+EI+KRTKLTNAHLPELFQ L
Sbjct: 241 RSAAQIDGVSSKPKSNFRKKNEITKRTKLTNAHLPELFQNL 281
>gi|388501696|gb|AFK38914.1| unknown [Lotus japonicus]
Length = 278
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/283 (75%), Positives = 238/283 (84%), Gaps = 5/283 (1%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MALQEKLDRFK+QQEKCQ TL++IA S + AT R TP A KFSNDT
Sbjct: 1 MALQEKLDRFKRQQEKCQSTLTSIA--STKASATQNGRRTPTPTPPAPVPV---KFSNDT 55
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQHINSIRK+PVGAQ+KRVI L E+RQAFT E+IN CYVD+ ANK VFDS+R NPK
Sbjct: 56 ERLQHINSIRKAPVGAQMKRVIALLFESRQAFTMEQINEACYVDMRANKDVFDSMRKNPK 115
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
V +DG++FSYKSKHDL+DK +LL L+RKFPEGIAVIDLKDSYPTV+EDLQALKAA +IWL
Sbjct: 116 VKFDGEKFSYKSKHDLRDKKELLFLIRKFPEGIAVIDLKDSYPTVLEDLQALKAAREIWL 175
Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
LSNFDSQEDIAYPNDP+VPIK DDDLK LFR I LP DM+DIE+DLQKNGMKPATNT KR
Sbjct: 176 LSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKR 235
Query: 241 RAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNGS 283
R+AAQ+QGISSK KPKKKK+EI+KRTKLTNAHLPELFQ L S
Sbjct: 236 RSAAQMQGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLKDS 278
>gi|357481685|ref|XP_003611128.1| General transcription factor IIE subunit [Medicago truncatula]
gi|355512463|gb|AES94086.1| General transcription factor IIE subunit [Medicago truncatula]
Length = 307
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/288 (73%), Positives = 236/288 (81%), Gaps = 18/288 (6%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MALQ KLDRFKKQQEKCQ TLS+IAA ++A + S P A PVKFS DT
Sbjct: 33 MALQGKLDRFKKQQEKCQSTLSSIAA----NKAVSASVPNALA---------PVKFSTDT 79
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQHINSIRK+PVGAQ+KRVID L ETRQA T E+IN C+VD+ ANK VFD++R NPK
Sbjct: 80 ERLQHINSIRKAPVGAQMKRVIDLLFETRQALTLEQINETCHVDMKANKDVFDNMRKNPK 139
Query: 121 VHYDGKRFSYK-----SKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAA 175
V YDG+RFSYK SKH L+DK +LL L+RKFPEGIAVIDLKDSYPTVMEDLQALK
Sbjct: 140 VRYDGERFSYKVTFILSKHALRDKKELLFLIRKFPEGIAVIDLKDSYPTVMEDLQALKGG 199
Query: 176 GQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT 235
+IWLLSNFDSQEDIAYPNDP+VPIK DDDLK LFR I LP DM+DIE+DLQKNGMKPAT
Sbjct: 200 REIWLLSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPAT 259
Query: 236 NTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNGS 283
NT KRR+AAQ++GISSK KPKKKK+EI+KRTKLTNAHLPELFQ LN S
Sbjct: 260 NTAKRRSAAQMEGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLNNS 307
>gi|356513413|ref|XP_003525408.1| PREDICTED: general transcription factor IIE subunit 2-like [Glycine
max]
Length = 279
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 217/283 (76%), Positives = 243/283 (85%), Gaps = 4/283 (1%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MALQEKLD+FKKQQEKCQ TLS AS+A T + ++ ++P VKFSNDT
Sbjct: 1 MALQEKLDKFKKQQEKCQTTLS----SIAASKAAATQKSAAHGSANGRNAAPAVKFSNDT 56
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQHINSIRK+PVGAQ+KRVID LLETRQAFTPE+IN CYVD+ ANK VF++LR NPK
Sbjct: 57 ERLQHINSIRKAPVGAQMKRVIDLLLETRQAFTPEQINGACYVDMKANKDVFENLRKNPK 116
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
V+YDG+RFSYKSK+ LKDK++LL L+RK+PEG+AVIDLKD+YPTVMEDLQALKAAGQIWL
Sbjct: 117 VNYDGQRFSYKSKYGLKDKTELLQLIRKYPEGLAVIDLKDAYPTVMEDLQALKAAGQIWL 176
Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
LSNFDSQEDIAYPNDP+V IK DDDLK LFR I LP DM+DIEKDLQKNGMKPATNT +R
Sbjct: 177 LSNFDSQEDIAYPNDPKVHIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAQR 236
Query: 241 RAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNGS 283
R+AAQIQGISSK KPKKKK EISKRTKLTNAHLPELFQ LN S
Sbjct: 237 RSAAQIQGISSKPKPKKKKSEISKRTKLTNAHLPELFQTLNSS 279
>gi|356528032|ref|XP_003532609.1| PREDICTED: general transcription factor IIE subunit 2-like [Glycine
max]
Length = 280
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/283 (76%), Positives = 242/283 (85%), Gaps = 3/283 (1%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MALQE+LD+FKKQQEKCQ TLS IAA A+ ++ A AA P VKFSNDT
Sbjct: 1 MALQERLDKFKKQQEKCQTTLSTIAATKAAAATQKSATHASANGRNAA---PAVKFSNDT 57
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQHINSIRK+PVGAQ+KRVID LLETRQAFTPE+IN CYVD+ ANK VF++LR NPK
Sbjct: 58 ERLQHINSIRKAPVGAQMKRVIDLLLETRQAFTPEQINEACYVDMKANKDVFENLRKNPK 117
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
V+YDG+R SYKSK+ +KDK++LL LVRK+PEG+AVIDLKD+YPTVMEDLQA+KAAGQIWL
Sbjct: 118 VNYDGQRLSYKSKYGIKDKTELLQLVRKYPEGLAVIDLKDAYPTVMEDLQAMKAAGQIWL 177
Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
LSNFDSQEDIAYPNDP+V IK DDDLK LFR I LP DM+DIEKDLQKNGMKPATNT +R
Sbjct: 178 LSNFDSQEDIAYPNDPKVHIKVDDDLKHLFRSIELPRDMIDIEKDLQKNGMKPATNTAQR 237
Query: 241 RAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNGS 283
R+AAQIQGISSK KPKKKK EISKRTKLTNAHLPELFQ LN S
Sbjct: 238 RSAAQIQGISSKPKPKKKKSEISKRTKLTNAHLPELFQNLNSS 280
>gi|84468356|dbj|BAE71261.1| hypothetical protein [Trifolium pratense]
Length = 270
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 215/283 (75%), Positives = 236/283 (83%), Gaps = 13/283 (4%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MALQ KLDRFKKQQEKC TLS+IAA AS A P+P PVKFSNDT
Sbjct: 1 MALQGKLDRFKKQQEKCASTLSSIAASKAASSAV----PSPLV---------PVKFSNDT 47
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQHINSIRK+PVGAQ+KRVID L ETRQA T E+IN C+VD+ ANK VFD++R NPK
Sbjct: 48 ERLQHINSIRKAPVGAQMKRVIDLLFETRQALTLEQINETCHVDMKANKDVFDNMRKNPK 107
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
V YDG+RFSYKSKH L+DK +LL L+RKFPEGIAVIDLKDSYPTVMEDLQALKA +IWL
Sbjct: 108 VRYDGERFSYKSKHSLRDKKELLFLIRKFPEGIAVIDLKDSYPTVMEDLQALKAGREIWL 167
Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
LSNFDSQEDIAYPNDP+VPIK DDDLKLLFR I LP DMLDIE+DLQKNGMKPATNT KR
Sbjct: 168 LSNFDSQEDIAYPNDPKVPIKVDDDLKLLFRGIELPRDMLDIERDLQKNGMKPATNTAKR 227
Query: 241 RAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNGS 283
R+AAQ++GISSK KPKKKK+EI+KRTKLTNAHLPELFQ L S
Sbjct: 228 RSAAQMEGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLKNS 270
>gi|125531807|gb|EAY78372.1| hypothetical protein OsI_33458 [Oryza sativa Indica Group]
Length = 279
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/282 (69%), Positives = 234/282 (82%), Gaps = 5/282 (1%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTA-ARSSPPVKFSND 59
M L++ L +FK+QQE+CQ +L++IAA + + R P A +A AR P+KFSND
Sbjct: 1 MDLKDSLSKFKQQQERCQSSLASIAASTSKPK----HRAQPVNAPSAPARPPQPIKFSND 56
Query: 60 TERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
TERLQHINS+RKSP+GAQIK VI+ L +TRQAFT E+IN YVD++ NK+VFDSLRNNP
Sbjct: 57 TERLQHINSVRKSPIGAQIKLVIELLYKTRQAFTAEQINETTYVDIHGNKSVFDSLRNNP 116
Query: 120 KVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIW 179
KVHYDG+RFSYKSKHDLK K QLLVLVRK+PEG+AV+++KD+YPTVMEDLQALKAAG++W
Sbjct: 117 KVHYDGRRFSYKSKHDLKGKDQLLVLVRKYPEGLAVVEVKDAYPTVMEDLQALKAAGEVW 176
Query: 180 LLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQK 239
LLSN DSQEDI YPNDP+ IK DDDLK LFR++ LP DM+DIEK+LQKNG+KP TNT K
Sbjct: 177 LLSNMDSQEDIVYPNDPKAKIKVDDDLKQLFREMELPRDMVDIEKELQKNGIKPMTNTAK 236
Query: 240 RRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLN 281
RRAAAQI G+ K KPKKK+ EI++RTKLTNAHLPELFQ LN
Sbjct: 237 RRAAAQINGVQPKAKPKKKQREITRRTKLTNAHLPELFQNLN 278
>gi|115481880|ref|NP_001064533.1| Os10g0397200 [Oryza sativa Japonica Group]
gi|19881736|gb|AAM01137.1|AC108884_19 Putative Transcription initiation factor IIE, beta subunit [Oryza
sativa Japonica Group]
gi|31431902|gb|AAP53614.1| Transcription initiation factor IIE beta subunit, putative,
expressed [Oryza sativa Japonica Group]
gi|78708547|gb|ABB47522.1| Transcription initiation factor IIE beta subunit, putative,
expressed [Oryza sativa Japonica Group]
gi|113639142|dbj|BAF26447.1| Os10g0397200 [Oryza sativa Japonica Group]
gi|125574698|gb|EAZ15982.1| hypothetical protein OsJ_31427 [Oryza sativa Japonica Group]
Length = 279
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/282 (69%), Positives = 234/282 (82%), Gaps = 5/282 (1%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTA-ARSSPPVKFSND 59
M L++ L +FK+QQE+CQ +L++IAA + + R P A +A AR P+KFSND
Sbjct: 1 MDLKDSLSKFKQQQERCQSSLASIAASTSKPK----HRAQPVNAPSAPARPLQPIKFSND 56
Query: 60 TERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
TERLQHINS+RKSP+GAQIK VI+ L +TRQAFT E+IN YVD++ NK+VFDSLRNNP
Sbjct: 57 TERLQHINSVRKSPIGAQIKLVIELLYKTRQAFTAEQINETTYVDIHGNKSVFDSLRNNP 116
Query: 120 KVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIW 179
KVHYDG+RFSYKSKHDLK K QLLVLVRK+PEG+AV+++KD+YPTVMEDLQALKAAG++W
Sbjct: 117 KVHYDGRRFSYKSKHDLKGKDQLLVLVRKYPEGLAVVEVKDAYPTVMEDLQALKAAGEVW 176
Query: 180 LLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQK 239
LLSN DSQEDI YPNDP+ IK DDDLK LFR++ LP DM+DIEK+LQKNG+KP TNT K
Sbjct: 177 LLSNMDSQEDIVYPNDPKAKIKVDDDLKQLFREMELPRDMVDIEKELQKNGIKPMTNTAK 236
Query: 240 RRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLN 281
RRAAAQI G+ K KPKKK+ EI++RTKLTNAHLPELFQ LN
Sbjct: 237 RRAAAQINGVQPKAKPKKKQREITRRTKLTNAHLPELFQNLN 278
>gi|359807359|ref|NP_001240869.1| uncharacterized protein LOC100788089 [Glycine max]
gi|255639642|gb|ACU20115.1| unknown [Glycine max]
Length = 257
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/280 (71%), Positives = 227/280 (81%), Gaps = 24/280 (8%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MA QEK +RFK+Q EK A+AS R+ P+KFSNDT
Sbjct: 1 MAFQEKQNRFKRQPEKS------------------------ASASQYGRTPAPIKFSNDT 36
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQH+NSIRK+PVGAQ+KRVID L ETR+A T E+IN CYVD+ ANK VF+S+R NPK
Sbjct: 37 ERLQHVNSIRKAPVGAQMKRVIDLLFETRKALTIEQINEACYVDMRANKDVFESMRKNPK 96
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
V YDG+RFSYKSKHD++DK+QLL LVRKFPEGIAV+DLKDSYPTVMEDLQALKAA +IWL
Sbjct: 97 VKYDGERFSYKSKHDVRDKNQLLFLVRKFPEGIAVVDLKDSYPTVMEDLQALKAAREIWL 156
Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
LSNFDSQEDIAYPNDP+VPIK DDDLK LFR I LP DM+DIE+DLQKNGMKPATNT KR
Sbjct: 157 LSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKR 216
Query: 241 RAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKL 280
R+AAQ++GISSK KPKKKK+EI+KRTKLTNAHLPELFQ L
Sbjct: 217 RSAAQMEGISSKPKPKKKKNEITKRTKLTNAHLPELFQNL 256
>gi|212723734|ref|NP_001131460.1| uncharacterized protein LOC100192795 [Zea mays]
gi|194691592|gb|ACF79880.1| unknown [Zea mays]
gi|414585524|tpg|DAA36095.1| TPA: hypothetical protein ZEAMMB73_089157 [Zea mays]
Length = 279
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/282 (70%), Positives = 231/282 (81%), Gaps = 5/282 (1%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAA-STAARSSPPVKFSND 59
M L++ L +FK+QQE+CQ +L++IAA S + R PA A + AR S P+KFSND
Sbjct: 1 MDLKDSLSKFKQQQERCQSSLASIAA----STSKPKHRAQPAHAPNVPARPSQPIKFSND 56
Query: 60 TERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
TERLQHINSIRKSPVGAQIK VI+ L +TRQAFT E+IN YVD++ NKAVFDSLRNNP
Sbjct: 57 TERLQHINSIRKSPVGAQIKLVIELLYKTRQAFTAEQINEATYVDIHGNKAVFDSLRNNP 116
Query: 120 KVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIW 179
KV YDG+RFSYKSKHDLK K QLLVL+RKFPEG+AV+++KD+Y V+EDLQALKAAG++W
Sbjct: 117 KVSYDGRRFSYKSKHDLKGKDQLLVLIRKFPEGLAVVEVKDAYSNVLEDLQALKAAGEVW 176
Query: 180 LLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQK 239
LLSN DSQEDI YPNDP+ IK DDDLK LFR+I LP DM+DIEK+LQKNG KP TNT K
Sbjct: 177 LLSNMDSQEDIVYPNDPKAKIKVDDDLKQLFREIELPRDMVDIEKELQKNGFKPMTNTAK 236
Query: 240 RRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLN 281
RRAAAQI G+ K KPKKK+ EI+KRTKLTNAHLPELFQ LN
Sbjct: 237 RRAAAQINGVKPKAKPKKKQREITKRTKLTNAHLPELFQNLN 278
>gi|414585525|tpg|DAA36096.1| TPA: hypothetical protein ZEAMMB73_089157 [Zea mays]
Length = 292
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/282 (70%), Positives = 231/282 (81%), Gaps = 5/282 (1%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPA-AASTAARSSPPVKFSND 59
M L++ L +FK+QQE+CQ +L++IAA S + R PA A + AR S P+KFSND
Sbjct: 14 MDLKDSLSKFKQQQERCQSSLASIAA----STSKPKHRAQPAHAPNVPARPSQPIKFSND 69
Query: 60 TERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
TERLQHINSIRKSPVGAQIK VI+ L +TRQAFT E+IN YVD++ NKAVFDSLRNNP
Sbjct: 70 TERLQHINSIRKSPVGAQIKLVIELLYKTRQAFTAEQINEATYVDIHGNKAVFDSLRNNP 129
Query: 120 KVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIW 179
KV YDG+RFSYKSKHDLK K QLLVL+RKFPEG+AV+++KD+Y V+EDLQALKAAG++W
Sbjct: 130 KVSYDGRRFSYKSKHDLKGKDQLLVLIRKFPEGLAVVEVKDAYSNVLEDLQALKAAGEVW 189
Query: 180 LLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQK 239
LLSN DSQEDI YPNDP+ IK DDDLK LFR+I LP DM+DIEK+LQKNG KP TNT K
Sbjct: 190 LLSNMDSQEDIVYPNDPKAKIKVDDDLKQLFREIELPRDMVDIEKELQKNGFKPMTNTAK 249
Query: 240 RRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLN 281
RRAAAQI G+ K KPKKK+ EI+KRTKLTNAHLPELFQ LN
Sbjct: 250 RRAAAQINGVKPKAKPKKKQREITKRTKLTNAHLPELFQNLN 291
>gi|356497222|ref|XP_003517461.1| PREDICTED: transcription initiation factor IIE subunit beta-like
[Glycine max]
Length = 257
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/280 (71%), Positives = 225/280 (80%), Gaps = 24/280 (8%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MA QEK +RFK+Q EK A AS R+S P+KFSNDT
Sbjct: 1 MAFQEKQNRFKRQPEKS------------------------APASQNGRTSAPIKFSNDT 36
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQH+NSIRK+PVGAQ+KRVID L ETR+A T E+IN CYVD+ ANK VF+S+R NPK
Sbjct: 37 ERLQHVNSIRKAPVGAQMKRVIDLLFETRKALTIEQINEACYVDMRANKDVFESMRKNPK 96
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
V YDG+RFSYKSKH ++DK+QLL LVRKFPEGIAV+DLKDSYP VMEDLQALKAA +IWL
Sbjct: 97 VKYDGERFSYKSKHAVRDKNQLLFLVRKFPEGIAVVDLKDSYPNVMEDLQALKAAREIWL 156
Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
LSNFDSQEDIAYPNDP+VPIK DDDLK LFR I LP DM+DIE+DLQKNGMKPATNT KR
Sbjct: 157 LSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKR 216
Query: 241 RAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKL 280
R+AAQ++GISSK KPKKKK+EI+KRTKLTNAHLPELFQ L
Sbjct: 217 RSAAQMEGISSKPKPKKKKNEITKRTKLTNAHLPELFQNL 256
>gi|326493090|dbj|BAJ85006.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 282
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/281 (69%), Positives = 231/281 (82%), Gaps = 2/281 (0%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTA-ARSSPPVKFSND 59
M L++ L RFK+QQE+CQ +L++IAA S AS R P A +A AR + P+KFSND
Sbjct: 1 MDLKDSLSRFKQQQERCQSSLASIAA-SQASTTKPKHRAQPINAQSAPARPAQPIKFSND 59
Query: 60 TERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
TERLQHINSIRKSP+GAQIK VI+ L +TRQAFT E+IN + YVD+N NKAVF+SLRNN
Sbjct: 60 TERLQHINSIRKSPIGAQIKLVIELLYKTRQAFTAEQINDETYVDINGNKAVFESLRNNL 119
Query: 120 KVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIW 179
KVHYDG+RFSYKSKHDL+ K QLL L+R EG+AV+++KD+YP+V+EDLQALKAAG++W
Sbjct: 120 KVHYDGRRFSYKSKHDLEGKDQLLELIRCHQEGLAVVEVKDAYPSVLEDLQALKAAGEVW 179
Query: 180 LLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQK 239
LLSN DSQEDI YPNDP+V IK DDDLK LFR I LP DM+DIEKDLQKNGMKP T+T K
Sbjct: 180 LLSNMDSQEDIVYPNDPKVKIKVDDDLKELFRGIELPRDMVDIEKDLQKNGMKPMTDTTK 239
Query: 240 RRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKL 280
RRAAAQI G+ K KPKKK+ EI+KRTKLTNAHLPELFQ L
Sbjct: 240 RRAAAQIHGVKPKAKPKKKQREITKRTKLTNAHLPELFQHL 280
>gi|357146234|ref|XP_003573920.1| PREDICTED: uncharacterized protein LOC100823282 [Brachypodium
distachyon]
Length = 282
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/282 (69%), Positives = 229/282 (81%), Gaps = 2/282 (0%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTA-ARSSPPVKFSND 59
M L++ L +FK+QQE+CQ +L++IAA S AS A R P A +A AR S P+KFSND
Sbjct: 1 MDLKDSLSKFKQQQERCQSSLASIAA-SQASTARPKHRAQPINAPSAPARPSQPIKFSND 59
Query: 60 TERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
TERLQH+NS+RKSPVGAQIK VI+ L +TRQAFT E+IN YVD++ NKAVFDSLRNN
Sbjct: 60 TERLQHLNSVRKSPVGAQIKLVIELLYKTRQAFTAEQINEATYVDIHGNKAVFDSLRNNL 119
Query: 120 KVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIW 179
KV YDG+RFSYKSKHDLK K QLL LV+ EG+AV+++KD+YPTV+EDLQALKAAG++W
Sbjct: 120 KVQYDGRRFSYKSKHDLKGKDQLLALVKDHREGLAVVEVKDAYPTVLEDLQALKAAGEVW 179
Query: 180 LLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQK 239
LLSN DSQEDI YPND +V IK DDDLK LFR I LP DM+DIEK+LQKNGMKP TNT K
Sbjct: 180 LLSNMDSQEDIVYPNDLKVKIKVDDDLKELFRGIELPRDMVDIEKELQKNGMKPMTNTTK 239
Query: 240 RRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLN 281
RRAAAQI G+ K KPKKK EI+KRTKLTNAHLPELFQ LN
Sbjct: 240 RRAAAQIHGVKPKAKPKKKNREITKRTKLTNAHLPELFQNLN 281
>gi|242074266|ref|XP_002447069.1| hypothetical protein SORBIDRAFT_06g028040 [Sorghum bicolor]
gi|241938252|gb|EES11397.1| hypothetical protein SORBIDRAFT_06g028040 [Sorghum bicolor]
Length = 279
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/282 (70%), Positives = 232/282 (82%), Gaps = 5/282 (1%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPA-AASTAARSSPPVKFSND 59
M L++ L RFK+QQE+CQ +L++IAA S + R PA A + AR S PVKFSND
Sbjct: 1 MDLKDSLSRFKQQQERCQSSLASIAASSSKPK----HRAQPAHAPNVPARPSQPVKFSND 56
Query: 60 TERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
TERLQHINSIRKSPVGAQIK VI+ L +TRQAFT E+IN YVD++ NKAVFDSLRNNP
Sbjct: 57 TERLQHINSIRKSPVGAQIKLVIELLYKTRQAFTAEQINDATYVDIHGNKAVFDSLRNNP 116
Query: 120 KVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIW 179
KV YDG+RFSYKSKHDLK K QLLVL+RKFPEG+AV+++KD+YP V+EDLQALKAAG++W
Sbjct: 117 KVSYDGRRFSYKSKHDLKGKDQLLVLIRKFPEGLAVVEVKDAYPNVLEDLQALKAAGEVW 176
Query: 180 LLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQK 239
LLSN DSQEDI YPNDP+ IK DDDLK LFR+I LP DM+DIEK+LQ+NG KP TNT K
Sbjct: 177 LLSNMDSQEDIVYPNDPKAKIKVDDDLKQLFREIELPRDMVDIEKELQRNGFKPMTNTAK 236
Query: 240 RRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLN 281
RRAAAQI G+ K KPKKK+ EI+KRTKLTNAHLPELFQ LN
Sbjct: 237 RRAAAQINGVKPKAKPKKKQREITKRTKLTNAHLPELFQNLN 278
>gi|297800004|ref|XP_002867886.1| hypothetical protein ARALYDRAFT_492835 [Arabidopsis lyrata subsp.
lyrata]
gi|297313722|gb|EFH44145.1| hypothetical protein ARALYDRAFT_492835 [Arabidopsis lyrata subsp.
lyrata]
Length = 286
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/284 (67%), Positives = 227/284 (79%), Gaps = 3/284 (1%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MAL+E+LD+F KQQ KCQ TLS+IA+ + ++ S P PAA S + PVKFSNDT
Sbjct: 1 MALKEQLDKFNKQQVKCQSTLSSIASSRERTGSSRQSVPLPAAISQKKPDAAPVKFSNDT 60
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQ+IN+IRK+PVGAQIKRVID L E R A TPE+IN CY+D++ANKAVFDSLR NPK
Sbjct: 61 ERLQNINNIRKAPVGAQIKRVIDLLFEKRLALTPEQINELCYIDMHANKAVFDSLRKNPK 120
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
HYDG+RFSYK+ HD+KDK+QLL LV K+P+GIAV+DLKD+YP V+EDL+AL A+ IWL
Sbjct: 121 AHYDGRRFSYKATHDVKDKNQLLSLVSKYPDGIAVVDLKDAYPNVIEDLKALSASEDIWL 180
Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
LSN SQEDIAYPN+ + IK DD+ K LFRDI +PSDMLD+EK+L K G+KPATNT +R
Sbjct: 181 LSN--SQEDIAYPNNFKCEIKVDDEFKALFRDIDIPSDMLDVEKELLKIGLKPATNTAER 238
Query: 241 RAAAQIQGISS-KNKPKKKKHEISKRTKLTNAHLPELFQKLNGS 283
RAAAQ GIS+ KKKK EISKRTKLTNAHLPELFQ LN S
Sbjct: 239 RAAAQTHGISNKPKDKKKKKQEISKRTKLTNAHLPELFQSLNAS 282
>gi|148909642|gb|ABR17912.1| unknown [Picea sitchensis]
Length = 284
Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/285 (65%), Positives = 227/285 (79%), Gaps = 8/285 (2%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAA-------KSGASRATTTSRPTPAAASTAARSSPP 53
M L +KLD+FK+QQ CQ TL+ +AA + + ++++ +P A S A P
Sbjct: 1 MDLSKKLDKFKQQQANCQSTLAKVAASRPPPKSSTITTSSSSSKKPQAPAPSLAQPPPPQ 60
Query: 54 VKFSNDTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFD 113
+KFSNDTERLQHINSIRKS VGAQIKRVID L ETRQA TP EIN CYVD+NANK VF+
Sbjct: 61 LKFSNDTERLQHINSIRKSAVGAQIKRVIDLLFETRQALTPAEINEACYVDINANKGVFE 120
Query: 114 SLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALK 173
SL+ N KV+YDG RF YKSKHDLKDK +LLVL+RK PEG+AVIDLKD+YP+V++DLQ LK
Sbjct: 121 SLKKNVKVNYDGHRFCYKSKHDLKDKHELLVLIRKAPEGVAVIDLKDAYPSVLDDLQELK 180
Query: 174 AAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKP 233
A+G +WLLSN+DSQEDI YPNDP+V IK D+D+K L+R+I LP DM+DIEKDLQKNGMKP
Sbjct: 181 ASGDVWLLSNYDSQEDIVYPNDPKVKIKVDEDVKQLYREIELPKDMVDIEKDLQKNGMKP 240
Query: 234 ATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
ATNT KR+AA Q+QG SK K KKK+ E +KRT+LTNAH+PELF+
Sbjct: 241 ATNTAKRKAAMQVQGAQSKQKQKKKR-EFTKRTRLTNAHMPELFK 284
>gi|15235379|ref|NP_193766.1| Transcription initiation factor TFIIE, beta subunit [Arabidopsis
thaliana]
gi|14326523|gb|AAK60306.1|AF385715_1 AT4g20330/F9F13_2 [Arabidopsis thaliana]
gi|5738378|emb|CAB52821.1| putative protein [Arabidopsis thaliana]
gi|7268828|emb|CAB79033.1| putative protein [Arabidopsis thaliana]
gi|18700218|gb|AAL77719.1| AT4g20330/F9F13_2 [Arabidopsis thaliana]
gi|20466494|gb|AAM20564.1| putative protein [Arabidopsis thaliana]
gi|39545894|gb|AAR28010.1| TFIIE-beta 2 [Arabidopsis thaliana]
gi|332658909|gb|AEE84309.1| Transcription initiation factor TFIIE, beta subunit [Arabidopsis
thaliana]
Length = 286
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 189/284 (66%), Positives = 228/284 (80%), Gaps = 3/284 (1%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MAL+E+LD+F KQQ KCQ TLS+IA+ + ++ + P PAA + + PVKFS+DT
Sbjct: 1 MALKEQLDKFNKQQVKCQSTLSSIASSRERTSSSRQNVPLPAAITQKKPDAAPVKFSSDT 60
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQ+IN+IRK+PVGAQIKRVID L E R A TPE+IN C+VD++ANKAVFDSLR NPK
Sbjct: 61 ERLQNINNIRKAPVGAQIKRVIDLLYERRLALTPEQINEWCHVDMHANKAVFDSLRKNPK 120
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
HYDG+RFSYK+ HD+ DK+QLL LVRK+ +GIAV+DLKD+YP VMEDL+AL A+G I+L
Sbjct: 121 AHYDGRRFSYKATHDVNDKNQLLSLVRKYLDGIAVVDLKDAYPNVMEDLKALSASGDIYL 180
Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
LSN SQEDIAYPND + IK DD+ K LFRDI +P+DMLD+EK+L K G+KPATNT +R
Sbjct: 181 LSN--SQEDIAYPNDFKCEIKVDDEFKALFRDINIPNDMLDVEKELLKIGLKPATNTAER 238
Query: 241 RAAAQIQGISS-KNKPKKKKHEISKRTKLTNAHLPELFQKLNGS 283
RAAAQ GIS+ KKKK EISKRTKLTNAHLPELFQ LNGS
Sbjct: 239 RAAAQTHGISNKPKDKKKKKQEISKRTKLTNAHLPELFQNLNGS 282
>gi|357113796|ref|XP_003558687.1| PREDICTED: transcription initiation factor IIE subunit beta-like
[Brachypodium distachyon]
Length = 284
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 187/279 (67%), Positives = 226/279 (81%), Gaps = 2/279 (0%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGA-SRATTTSRPTPAAASTA-ARSSPPVKFSN 58
MAL E+L +FK+QQE+CQ TLS+IAA + +++ R PA A +A AR + +KFSN
Sbjct: 1 MALNERLSKFKQQQERCQTTLSSIAASQASSTKSQIAPRSKPANAPSAPARPTQAIKFSN 60
Query: 59 DTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNN 118
DTERLQHINS+RKSPVGAQIK VI+ L +TR AFT E+I+ YV +N+NKAVFDSLRNN
Sbjct: 61 DTERLQHINSVRKSPVGAQIKLVIELLYKTRLAFTAEQIDGATYVAINSNKAVFDSLRNN 120
Query: 119 PKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQI 178
PKV +DGKRFSYKSKHDL K QLL L+R +PEG+ V+++KD+YP+V+EDLQALKA+G I
Sbjct: 121 PKVQFDGKRFSYKSKHDLNGKDQLLSLIRDYPEGLPVVEVKDAYPSVLEDLQALKASGDI 180
Query: 179 WLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQ 238
W LS+ DSQEDIAYPNDP+ IK D DLK L+R I LP DMLDIEK+LQKNG+KPAT+T
Sbjct: 181 WWLSSMDSQEDIAYPNDPKSKIKLDADLKDLYRGIELPRDMLDIEKELQKNGLKPATDTT 240
Query: 239 KRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELF 277
KRRAAAQI G K KPKKK+ EI+KRTKLTNAH+PELF
Sbjct: 241 KRRAAAQIHGQPPKPKPKKKQREITKRTKLTNAHMPELF 279
>gi|242034551|ref|XP_002464670.1| hypothetical protein SORBIDRAFT_01g023100 [Sorghum bicolor]
gi|241918524|gb|EER91668.1| hypothetical protein SORBIDRAFT_01g023100 [Sorghum bicolor]
Length = 273
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 184/282 (65%), Positives = 225/282 (79%), Gaps = 13/282 (4%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAA-KSGASRATTTSRPTPAAASTAARSSPPVKFSND 59
M L++ L RFK+QQE+CQ +L++IAA ++ AS+ ++P A S ARSS +KFSND
Sbjct: 1 MDLKDSLSRFKQQQERCQSSLTSIAANQTSASKPKHRAQPI-NAPSVPARSSQSIKFSND 59
Query: 60 TERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
TERLQHINSIRKSPVGAQ+K VI+ L +TRQAFT E+IN YVD++ NKAV DSLRNNP
Sbjct: 60 TERLQHINSIRKSPVGAQMKLVIELLYKTRQAFTAEQINEATYVDIHGNKAVSDSLRNNP 119
Query: 120 KVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIW 179
K SKHDLK K QLLVL+RKF EG+AV+++KD+YPTVMEDLQALKAAG++W
Sbjct: 120 K-----------SKHDLKGKDQLLVLIRKFTEGLAVMEIKDAYPTVMEDLQALKAAGEVW 168
Query: 180 LLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQK 239
LLSN DSQEDI YPNDP+ +K DDDLKLLFR+ LP DM+D+EK+LQKNG+KP TNT K
Sbjct: 169 LLSNMDSQEDIVYPNDPKTKMKVDDDLKLLFRETELPRDMVDVEKELQKNGIKPVTNTAK 228
Query: 240 RRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLN 281
RRAAAQI G+ SK+KPKKK +I+KR++LTN HLPELFQ +N
Sbjct: 229 RRAAAQIDGVKSKSKPKKKDPKITKRSRLTNGHLPELFQDIN 270
>gi|255638616|gb|ACU19614.1| unknown [Glycine max]
Length = 246
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 170/240 (70%), Positives = 198/240 (82%), Gaps = 5/240 (2%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MALQEKLD+FKKQQEKCQ TLS AS+A T + ++ ++P VKFSNDT
Sbjct: 1 MALQEKLDKFKKQQEKCQTTLS----SIAASKAAATQKSAAHGSANGRNAAPAVKFSNDT 56
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQHINSIRK+PVGAQ+KRVID LLETRQAFTPE+IN CYVD+ ANK VF++LR NPK
Sbjct: 57 ERLQHINSIRKAPVGAQMKRVIDLLLETRQAFTPEQINGACYVDMKANKDVFENLRKNPK 116
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
V+YDG+RFSYKSK+ LKDK++LL L+RK+PEG+AVIDLKD+YPTVMEDLQALKAAGQIWL
Sbjct: 117 VNYDGQRFSYKSKYGLKDKTELLQLIRKYPEGLAVIDLKDAYPTVMEDLQALKAAGQIWL 176
Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
LSNFDSQEDIAYPNDP+V IK DDDLK LFR I LP DM+DIEK + K+GMK + +R
Sbjct: 177 LSNFDSQEDIAYPNDPKVHIKVDDDLKQLFRSIELPRDMIDIEK-IFKDGMKLLPHCTER 235
>gi|297799964|ref|XP_002867866.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313702|gb|EFH44125.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 285
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 177/289 (61%), Positives = 219/289 (75%), Gaps = 14/289 (4%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKS--GASRATTTSRPTPAAASTAARSSPPVKFSN 58
MALQE+L++F KQQEKCQ TLS+I A S G SR++ PAA ++ ++ KFS
Sbjct: 1 MALQEQLNKFNKQQEKCQSTLSSIIASSRTGPSRSSV-----PAATTSQKPNAVRGKFSE 55
Query: 59 DTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNN 118
+T++LQHIN+IR S VGAQ+K VID LL + ++T E+IN CYVD+ ANKAVF+SLR N
Sbjct: 56 NTKQLQHINNIRNSAVGAQMKLVIDLLL--KPSYTAEQINEACYVDMTANKAVFNSLRKN 113
Query: 119 PKVHYDGK-RFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQ 177
PKVHYDG+ RFSYK+ HD+KDK QLL V K I V+DLKD+YP VMEDLQALKA+G
Sbjct: 114 PKVHYDGRSRFSYKATHDIKDKKQLLSFVNKSSNVIDVVDLKDAYPNVMEDLQALKASGD 173
Query: 178 I-WLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATN 236
I WL SN S+E I YPND + P K DD+LK LFRDI +PSDMLD+EK+L K G+KPATN
Sbjct: 174 IFWLPSNTGSKEGIVYPNDLKYP-KIDDELKALFRDIDIPSDMLDVEKELLKIGLKPATN 232
Query: 237 TQKRRAAAQIQGISS--KNKPKKKKHEISKRTKLTNAHLPELFQKLNGS 283
+R+AA Q+ G+S+ K+K KKKK EISKRTKLTN+H+PELFQ LN S
Sbjct: 233 IAERKAAEQLHGVSNKPKDKKKKKKQEISKRTKLTNSHIPELFQSLNAS 281
>gi|217072652|gb|ACJ84686.1| unknown [Medicago truncatula]
Length = 217
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 152/216 (70%), Positives = 175/216 (81%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MALQE+LDRFKKQQEKCQ TLS+IA+ SR T A++ S VKFS+DT
Sbjct: 1 MALQEQLDRFKKQQEKCQSTLSSIASSKVGSRKPNTPVVATNASANGRNSRTGVKFSSDT 60
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQ IN+IRK+PVGAQ+KRVID LLETRQAFTPE+IN CYVD+ ANK VF SLR NPK
Sbjct: 61 ERLQQINNIRKAPVGAQMKRVIDLLLETRQAFTPEQINEACYVDMRANKDVFGSLRKNPK 120
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
V YDG+RFSYK+K+ LK+KS+LL L+R++PEG+AV DLKD+YP VMEDLQALKAAGQIWL
Sbjct: 121 VEYDGQRFSYKAKYGLKEKSELLQLIRRYPEGLAVFDLKDAYPNVMEDLQALKAAGQIWL 180
Query: 181 LSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALP 216
LSNFDSQ+DI YPNDP+ IK DDDLK LFR I LP
Sbjct: 181 LSNFDSQDDITYPNDPKANIKVDDDLKQLFRSIELP 216
>gi|168040651|ref|XP_001772807.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675884|gb|EDQ62374.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 284
Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 163/294 (55%), Positives = 206/294 (70%), Gaps = 25/294 (8%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTA-------ARSSPP 53
MAL +KL +F KQQEK Q AS AT +RP PA+ S + RS P
Sbjct: 1 MALAQKLAQFNKQQEKLQ-----------ASLATLPTRPKPASGSASRKAPAPPPRSQPL 49
Query: 54 V------KFSNDTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNA 107
V F+NDTE+LQ I +I+KSPVGAQIKRV+D LLETRQ+ PEEIN C+VDV
Sbjct: 50 VPLAQRFSFTNDTEKLQQIATIQKSPVGAQIKRVLDLLLETRQSLLPEEINDLCFVDVKG 109
Query: 108 NKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVME 167
NK VF+SL++N KV +DG+RF+YKSKH LK+K +LLVLVRK EG+ + DLKDSYP +
Sbjct: 110 NKDVFESLKSNVKVSFDGQRFAYKSKHVLKNKDELLVLVRKLSEGVPMGDLKDSYPGIAA 169
Query: 168 DLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQ 227
D+Q LKA+G++W+L N DSQEDI YPNDP++ IK D+DLK L R I P + +D+E++LQ
Sbjct: 170 DVQDLKASGKVWVLMNSDSQEDIVYPNDPKIDIKVDEDLKQLIRGIDTPREFMDVERELQ 229
Query: 228 KNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLN 281
K GMKPATN+ +R A A + S KP+KKK SKRTK TNAHLPELF+ ++
Sbjct: 230 KAGMKPATNSARREAMAGVPR-SQIPKPQKKKRRESKRTKYTNAHLPELFKSID 282
>gi|15233477|ref|NP_193833.1| Transcription initiation factor TFIIE, beta subunit [Arabidopsis
thaliana]
gi|5262791|emb|CAB45896.1| putative protein [Arabidopsis thaliana]
gi|7268898|emb|CAB79101.1| putative protein [Arabidopsis thaliana]
gi|22136644|gb|AAM91641.1| unknown protein [Arabidopsis thaliana]
gi|332658987|gb|AEE84387.1| Transcription initiation factor TFIIE, beta subunit [Arabidopsis
thaliana]
Length = 275
Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 159/280 (56%), Positives = 204/280 (72%), Gaps = 8/280 (2%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MAL+E+LD+F KQQEKCQ T + +SR + PAA ++ + KFS +T
Sbjct: 1 MALREQLDKFNKQQEKCQST----LSSISSSRTALSRSYVPAATTSQKPNVFRGKFSENT 56
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
++LQHI +IR S VGAQ+K VID L +TR A+T E+IN CYVD++ NKAVFDSLR NPK
Sbjct: 57 KQLQHITNIRNSAVGAQMKIVIDLLFKTRLAYTAEQINEACYVDMHNNKAVFDSLRKNPK 116
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQI-W 179
VHYDG+RFSYK+ H++KDK QLL V K + I V DLKD+YP VMEDL++LK++G+I W
Sbjct: 117 VHYDGRRFSYKATHNIKDKKQLLSFVNKSDKVIDVSDLKDAYPNVMEDLKSLKSSGEIFW 176
Query: 180 LLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQK 239
LLSN DS+E Y N+ P K DD+LK LFRDI +PSDML++EK+L K G+KPATN +
Sbjct: 177 LLSNTDSKEGTVYRNNMEYP-KIDDELKALFRDI-IPSDMLEVEKELLKIGLKPATNIAE 234
Query: 240 RRAAAQIQGISS-KNKPKKKKHEISKRTKLTNAHLPELFQ 278
RRAA Q+ G+S+ KKKK EI+ RTKLTN+H+ ELFQ
Sbjct: 235 RRAAEQLHGVSNKPKDKKKKKKEITNRTKLTNSHMLELFQ 274
>gi|39545898|gb|AAR28012.1| TFIIE-beta 1 [Arabidopsis thaliana]
Length = 273
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 158/279 (56%), Positives = 203/279 (72%), Gaps = 8/279 (2%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MAL+E+LD+F KQQEKCQ T + +SR + PAA ++ + KFS +T
Sbjct: 1 MALREQLDKFNKQQEKCQST----LSSISSSRTALSRSYVPAATTSQKPNVFRGKFSENT 56
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
++LQHI +IR S VGAQ+K VID L +TR A+T E+IN CYVD++ NKAVFDSLR NPK
Sbjct: 57 KQLQHITNIRNSAVGAQMKIVIDLLFKTRLAYTAEQINEACYVDMHNNKAVFDSLRKNPK 116
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQI-W 179
VHYDG+RFSYK+ H++KDK QLL V K + I V DLKD+YP VMEDL++LK++G+I W
Sbjct: 117 VHYDGRRFSYKATHNIKDKKQLLSFVNKSDKVIDVSDLKDAYPNVMEDLKSLKSSGEIFW 176
Query: 180 LLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQK 239
LLSN DS+E Y N+ P K DD+LK LFRDI +PSDML++EK+L K G+KPATN +
Sbjct: 177 LLSNTDSKEGTVYRNNMEYP-KIDDELKALFRDI-IPSDMLEVEKELLKIGLKPATNIAE 234
Query: 240 RRAAAQIQGISS-KNKPKKKKHEISKRTKLTNAHLPELF 277
RRAA Q+ G+S+ KKKK EI+ RTKLTN+H+ ELF
Sbjct: 235 RRAAEQLHGVSNKPKDKKKKKKEITNRTKLTNSHMLELF 273
>gi|242042027|ref|XP_002468408.1| hypothetical protein SORBIDRAFT_01g045430 [Sorghum bicolor]
gi|241922262|gb|EER95406.1| hypothetical protein SORBIDRAFT_01g045430 [Sorghum bicolor]
Length = 300
Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/301 (50%), Positives = 201/301 (66%), Gaps = 27/301 (8%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSP-----PVK 55
MAL ++L++FK+QQE+CQ TLS+I A + + +TS+ P A +P P+K
Sbjct: 1 MALNDRLNKFKQQQERCQNTLSSIFA---SQTSISTSKHVPGIQPVNAPLAPIKPLHPIK 57
Query: 56 FSNDTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSL 115
FSNDTERLQHINS+RKS VG QIK V++ L +TRQ+FT +++N YVD++ NKAVFDSL
Sbjct: 58 FSNDTERLQHINSVRKSAVGVQIKLVVELLYKTRQSFTAKQVNEATYVDIHGNKAVFDSL 117
Query: 116 RNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDL------ 169
RNNPKV +DG RFSYK KH L + +LL L+++ G+ V D+KD+YP+V+ED
Sbjct: 118 RNNPKVLFDGTRFSYKPKHILTGRDELLGLIKEKECGLPVEDIKDAYPSVLEDCRFSLIW 177
Query: 170 ---------QALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDML 220
+ALKA+G +W LS+ SQED+AY NDPR I D+DLK LF LP DML
Sbjct: 178 AVIYSIANAEALKASGDVWWLSSTQSQEDMAYFNDPRYNITVDNDLKELFLKTELPRDML 237
Query: 221 DIEKDLQKNGMKPATNTQKRRAAAQIQGIS----SKNKPKKKKHEISKRTKLTNAHLPEL 276
D+EK+++K+G KP TNT KRRA AQI + +K KK++ K LTN H+PEL
Sbjct: 238 DVEKEIKKSGEKPMTNTTKRRALAQILDAAPKTKTKGSKKKQRRLTGKSKGLTNIHMPEL 297
Query: 277 F 277
F
Sbjct: 298 F 298
>gi|222624290|gb|EEE58422.1| hypothetical protein OsJ_09621 [Oryza sativa Japonica Group]
Length = 288
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 150/278 (53%), Positives = 189/278 (67%), Gaps = 4/278 (1%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGAS-RATTTSRPTPAAASTAARSSPPVKFSND 59
MAL E+L++F++QQE+CQ TLS+IAA ++ R+ T P + P KFS+D
Sbjct: 1 MALHERLNKFRQQQERCQTTLSSIAANQASTPRSNITRWVQPTNGPSTPAKPPQRKFSDD 60
Query: 60 TERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
TERLQ INS+RKSP AQIK VI+ L +TRQA T ++IN YV ++ NK VFD L+NNP
Sbjct: 61 TERLQRINSVRKSPAAAQIKIVIELLEKTRQALTADQINEATYVHIHGNKEVFDRLKNNP 120
Query: 120 KVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIW 179
KVH+ G FSYKSK+ + K +LL L+RKFP+G+AV ++KD+Y V+EDL+ALKA+G +
Sbjct: 121 KVHFVGNLFSYKSKYGVNGKDKLLSLIRKFPDGLAVAEIKDAYLAVLEDLKALKASGVVC 180
Query: 180 LL-SNFDSQEDIAYPN-DPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNT 237
L+ S S E + YP DP IK DDDLK L R I LP DMLDIEK+LQKNG TN
Sbjct: 181 LVASTTKSDEGVVYPEIDPMSKIKFDDDLKELARSILLPRDMLDIEKELQKNGQPTRTNA 240
Query: 238 QKRRAAAQIQGISSKNKPKKKKHE-ISKRTKLTNAHLP 274
KRRA AQI K KKK ++ RTKLTNAHLP
Sbjct: 241 AKRRADAQILLYPPKPNKSKKKPRGLTSRTKLTNAHLP 278
>gi|297600406|ref|NP_001049137.2| Os03g0176100 [Oryza sativa Japonica Group]
gi|255674244|dbj|BAF11051.2| Os03g0176100 [Oryza sativa Japonica Group]
Length = 342
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 150/278 (53%), Positives = 189/278 (67%), Gaps = 4/278 (1%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGAS-RATTTSRPTPAAASTAARSSPPVKFSND 59
MAL E+L++F++QQE+CQ TLS+IAA ++ R+ T P + P KFS+D
Sbjct: 55 MALHERLNKFRQQQERCQTTLSSIAANQASTPRSNITRWVQPTNGPSTPAKPPQRKFSDD 114
Query: 60 TERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
TERLQ INS+RKSP AQIK VI+ L +TRQA T ++IN YV ++ NK VFD L+NNP
Sbjct: 115 TERLQRINSVRKSPAAAQIKIVIELLEKTRQALTADQINEATYVHIHGNKEVFDRLKNNP 174
Query: 120 KVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIW 179
KVH+ G FSYKSK+ + K +LL L+RKFP+G+AV ++KD+Y V+EDL+ALKA+G +
Sbjct: 175 KVHFVGNLFSYKSKYGVNGKDKLLSLIRKFPDGLAVAEIKDAYLAVLEDLKALKASGVVC 234
Query: 180 LL-SNFDSQEDIAYPN-DPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNT 237
L+ S S E + YP DP IK DDDLK L R I LP DMLDIEK+LQKNG TN
Sbjct: 235 LVASTTKSDEGVVYPEIDPMSKIKFDDDLKELARSILLPRDMLDIEKELQKNGQPTRTNA 294
Query: 238 QKRRAAAQIQGISSKNKPKKKKHE-ISKRTKLTNAHLP 274
KRRA AQI K KKK ++ RTKLTNAHLP
Sbjct: 295 AKRRADAQILLYPPKPNKSKKKPRGLTSRTKLTNAHLP 332
>gi|108706466|gb|ABF94261.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 474
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 136/249 (54%), Positives = 173/249 (69%), Gaps = 3/249 (1%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGAS-RATTTSRPTPAAASTAARSSPPVKFSND 59
MAL E+L++F++QQE+CQ TLS+IAA ++ R+ T P + P KFS+D
Sbjct: 55 MALHERLNKFRQQQERCQTTLSSIAANQASTPRSNITRWVQPTNGPSTPAKPPQRKFSDD 114
Query: 60 TERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
TERLQ INS+RKSP AQIK VI+ L +TRQA T ++IN YV ++ NK VFD L+NNP
Sbjct: 115 TERLQRINSVRKSPAAAQIKIVIELLEKTRQALTADQINEATYVHIHGNKEVFDRLKNNP 174
Query: 120 KVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIW 179
KVH+ G FSYKSK+ + K +LL L+RKFP+G+AV ++KD+Y V+EDL+ALKA+G +
Sbjct: 175 KVHFVGNLFSYKSKYGVNGKDKLLSLIRKFPDGLAVAEIKDAYLAVLEDLKALKASGVVC 234
Query: 180 LL-SNFDSQEDIAYPN-DPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNT 237
L+ S S E + YP DP IK DDDLK L R I LP DMLDIEK+LQKNG TN
Sbjct: 235 LVASTTKSDEGVVYPEIDPMSKIKFDDDLKELARSILLPRDMLDIEKELQKNGQPTRTNA 294
Query: 238 QKRRAAAQI 246
KRRA AQI
Sbjct: 295 AKRRADAQI 303
>gi|357116861|ref|XP_003560195.1| PREDICTED: uncharacterized protein LOC100827117 [Brachypodium
distachyon]
Length = 490
Score = 253 bits (647), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 145/283 (51%), Positives = 197/283 (69%), Gaps = 16/283 (5%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVK-FSND 59
MAL E L+RFK+QQE+C LS++AA S+A PA + + + PPV+ FS D
Sbjct: 1 MALNESLNRFKQQQERC---LSSMAA----SQARPQQLSKPAVTNAPSANKPPVRLFSED 53
Query: 60 TERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNA--NKAVFDSLRN 117
TERLQ +NS+ KSPVGAQIK V+D L + R+AFT ++IN + +V + + A+ +SLRN
Sbjct: 54 TERLQRMNSVSKSPVGAQIKLVVDLLYKKREAFTAKQINEETHVAIEGPHSAALLESLRN 113
Query: 118 NPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQ 177
NPKV +DG+RFSYK KH++K K LL L+ FP+G+ V +++D+Y +V++DLQALK G
Sbjct: 114 NPKVQFDGRRFSYKPKHNVKGKHDLLQLITSFPDGLPVAEVEDAYLSVLQDLQALKDPGD 173
Query: 178 IWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNT 237
I+ LS Q+D+ Y NDPR+ +K D + K LF ++ LP DMLDIEK+L++NG +PAT+T
Sbjct: 174 IYWLSG---QQDMVYKNDPRMRMKVDKEFKELFHEMKLPRDMLDIEKELRRNGDRPATDT 230
Query: 238 QKRRAAAQIQGISSKNKPKKKKHE---ISKRTKLTNAHLPELF 277
KRRAAAQ S KKK + I+ RTKLTNAHLPELF
Sbjct: 231 VKRRAAAQANAARSMKLRKKKTKQPRGITGRTKLTNAHLPELF 273
>gi|218192186|gb|EEC74613.1| hypothetical protein OsI_10228 [Oryza sativa Indica Group]
Length = 323
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/284 (51%), Positives = 182/284 (64%), Gaps = 21/284 (7%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGAS-RATTTSRPTPAAASTAARSSPPVKFSND 59
MAL E+L++F++QQE+CQ TLS+IAA ++ R+ T P + P KFS+D
Sbjct: 55 MALHERLNKFRQQQERCQTTLSSIAANQASTPRSNITRWVQPTNGPSTPAKPPQRKFSDD 114
Query: 60 TERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
TERLQ INS+RKSP AQIK VI+ L +TRQA T ++IN YV ++ NK VFD L+NNP
Sbjct: 115 TERLQRINSVRKSPAAAQIKIVIELLEKTRQALTADQINEATYVHIHGNKEVFDRLKNNP 174
Query: 120 KVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIW 179
KVH+ G FSY KFP+G+AV ++KD+Y V+EDL+ALKA+G +
Sbjct: 175 KVHFVGNLFSY-----------------KFPDGLAVAEIKDAYLAVLEDLKALKASGDVC 217
Query: 180 LL-SNFDSQEDIAYPN-DPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNT 237
L+ S S E + YP D IK DDDLK L R I LP DMLDIEK+LQKNG TN
Sbjct: 218 LVASTTKSDEGVVYPEIDQMSKIKFDDDLKELARSILLPRDMLDIEKELQKNGQPTRTNA 277
Query: 238 QKRRAAAQI-QGISSKNKPKKKKHEISKRTKLTNAHLPELFQKL 280
KRRA AQI NK KKK H ++ RTKLTNAHLPELF L
Sbjct: 278 AKRRADAQILLYPPKPNKSKKKPHGLTSRTKLTNAHLPELFMDL 321
>gi|302791872|ref|XP_002977702.1| hypothetical protein SELMODRAFT_107428 [Selaginella moellendorffii]
gi|302795614|ref|XP_002979570.1| hypothetical protein SELMODRAFT_419190 [Selaginella moellendorffii]
gi|300152818|gb|EFJ19459.1| hypothetical protein SELMODRAFT_419190 [Selaginella moellendorffii]
gi|300154405|gb|EFJ21040.1| hypothetical protein SELMODRAFT_107428 [Selaginella moellendorffii]
Length = 300
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/291 (46%), Positives = 190/291 (65%), Gaps = 13/291 (4%)
Query: 3 LQEKLDRFKKQQEKCQETLSNIAAKSGAS-------------RATTTSRPTPAAASTAAR 49
L +L++FK+QQ+ + A +SG AA S A
Sbjct: 4 LSRQLNKFKQQQQALTDVAVAAAKRSGGGSKKKPPVAPAAPAAPPGGGGGGGAAPSPAPP 63
Query: 50 SSPPVKFSNDTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANK 109
S + F ND E+LQ IN +R+SP AQ+KRV+D LLETR+A P+EIN C+VDV NK
Sbjct: 64 SISNLTFQNDKEKLQMINQVRRSPTMAQVKRVLDVLLETREALLPDEINNRCFVDVANNK 123
Query: 110 AVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDL 169
VF++L+NN KV +DG+RFSYK+KH LK+K++LLV +RK EG+A+ +L+D+YP ++ D+
Sbjct: 124 EVFETLKNNVKVSFDGQRFSYKAKHGLKNKAELLVQLRKCTEGMALSELRDAYPGIVSDV 183
Query: 170 QALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKN 229
Q LKA+G+I ++ N DSQE+I YP+DPR+ IK D+D+ L R I LP+D + +E++LQKN
Sbjct: 184 QELKASGEIRVMCNSDSQEEILYPDDPRMKIKVDEDIAKLCRSIELPTDFVLVERELQKN 243
Query: 230 GMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKL 280
G++P TN+ RR + +KKK +ISKRTK TN HLPELF+ +
Sbjct: 244 GVRPMTNSVLRRERMSLLSAQQGGSKQKKKKKISKRTKYTNIHLPELFKSV 294
>gi|357481683|ref|XP_003611127.1| General transcription factor IIE subunit [Medicago truncatula]
gi|355512462|gb|AES94085.1| General transcription factor IIE subunit [Medicago truncatula]
Length = 191
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 120/171 (70%), Positives = 135/171 (78%), Gaps = 13/171 (7%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MALQ KLDRFKKQQEKCQ TLS+IAA ++A + S P A PVKFS DT
Sbjct: 33 MALQGKLDRFKKQQEKCQSTLSSIAA----NKAVSASVPNALA---------PVKFSTDT 79
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQHINSIRK+PVGAQ+KRVID L ETRQA T E+IN C+VD+ ANK VFD++R NPK
Sbjct: 80 ERLQHINSIRKAPVGAQMKRVIDLLFETRQALTLEQINETCHVDMKANKDVFDNMRKNPK 139
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQA 171
V YDG+RFSYKSKH L+DK +LL L+RKFPEGIAVIDLKDSYPTVMEDLQ
Sbjct: 140 VRYDGERFSYKSKHALRDKKELLFLIRKFPEGIAVIDLKDSYPTVMEDLQV 190
>gi|357481681|ref|XP_003611126.1| General transcription factor IIE subunit [Medicago truncatula]
gi|355512461|gb|AES94084.1| General transcription factor IIE subunit [Medicago truncatula]
Length = 205
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 120/172 (69%), Positives = 136/172 (79%), Gaps = 13/172 (7%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MALQ KLDRFKKQQEKCQ TLS+IAA ++A + S P A PVKFS DT
Sbjct: 33 MALQGKLDRFKKQQEKCQSTLSSIAA----NKAVSASVPNALA---------PVKFSTDT 79
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQHINSIRK+PVGAQ+KRVID L ETRQA T E+IN C+VD+ ANK VFD++R NPK
Sbjct: 80 ERLQHINSIRKAPVGAQMKRVIDLLFETRQALTLEQINETCHVDMKANKDVFDNMRKNPK 139
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQAL 172
V YDG+RFSYKSKH L+DK +LL L+RKFPEGIAVIDLKDSYPTVMEDLQ +
Sbjct: 140 VRYDGERFSYKSKHALRDKKELLFLIRKFPEGIAVIDLKDSYPTVMEDLQFI 191
>gi|297735211|emb|CBI17573.3| unnamed protein product [Vitis vinifera]
Length = 178
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/158 (77%), Positives = 136/158 (86%), Gaps = 2/158 (1%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MALQE L +FKKQQEKCQ TL++IAAK+ +S+ + TPAA + + VKFSNDT
Sbjct: 1 MALQESLAKFKKQQEKCQSTLTSIAAKAVSSKPSVPQNFTPAAPTKPPTPA--VKFSNDT 58
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
ERLQHINSIRK+PVGAQIKRVID LLETRQAFTPE+IN CYVD+ ANKAVFDSLRNNPK
Sbjct: 59 ERLQHINSIRKAPVGAQIKRVIDLLLETRQAFTPEQINEACYVDMTANKAVFDSLRNNPK 118
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDL 158
V+YDGKRFSYKSKHDLKDKSQLLVL+RKFPEGIAVIDL
Sbjct: 119 VNYDGKRFSYKSKHDLKDKSQLLVLIRKFPEGIAVIDL 156
>gi|384253521|gb|EIE26996.1| hypothetical protein COCSUDRAFT_46310 [Coccomyxa subellipsoidea
C-169]
Length = 285
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 142/281 (50%), Gaps = 18/281 (6%)
Query: 3 LQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDTER 62
LQ+ L+ F+K+Q + + ++ A K +A P A R P + S T +
Sbjct: 8 LQKALEAFRKRQAEIATSSASAARKP--KKAAPKRDGKPKAGRGRGRGQAPSE-SPLTGK 64
Query: 63 LQHINSIRKS--PVGAQIKRVIDRLLETRQ-AFTPEEINRDCYVDVNANKAVFDSLRNNP 119
NS+ +S P+ QIK V+D LL R A +P +I+ D + + +L N
Sbjct: 65 EAVRNSVARSTVPLAKQIKNVLDHLLADRMSALSPADISARFDHDASPGTPLHMALAAND 124
Query: 120 KVHY--DGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQ 177
K+ DG F+YK+ H+L DK QL + +++ PEG LKD+Y V D+ ALK+ G
Sbjct: 125 KIEVLPDGS-FTYKAAHELGDKKQLYMHLQRLPEGTYAGTLKDTYADVAADIAALKSEGL 183
Query: 178 IWLLSNFD-SQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATN 236
IW L + D +++ YP + R I+ D D+ L+ D+ +P+D +E +L+++G+ PA
Sbjct: 184 IWALPSVDVGGDEVLYPREERPLIRVDPDVAALWHDVTVPADPEALEDELRRSGITPAPR 243
Query: 237 TQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELF 277
+ RR K+K + +TN H+PELF
Sbjct: 244 SGPRRRPPPGA--------KQKAKRAYRPRNVTNVHMPELF 276
>gi|255080228|ref|XP_002503694.1| predicted protein [Micromonas sp. RCC299]
gi|226518961|gb|ACO64952.1| predicted protein [Micromonas sp. RCC299]
Length = 314
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 116/218 (53%), Gaps = 22/218 (10%)
Query: 79 KRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK----VHYDGKRF----SY 130
KRV+D L TR FT E++ + ++ ++D L +NPK VH R SY
Sbjct: 86 KRVLDLLNTTRANFTVAELHNELGFSC-SDPELWDMLTHNPKIQQGVHERRTRMEPTISY 144
Query: 131 KSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDI 190
K KH + K ++L LV K P+G+ + D+ D+Y ++D +AL A G + +L+N +++E +
Sbjct: 145 KPKHVFEGKREMLELVTKMPDGVLMDDVTDAYTGAVDDCEALIAEGLVLMLTNAETRERV 204
Query: 191 AYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGIS 250
YP D R + DDD+ LF + +P + + L+K G +PA R AA+ G
Sbjct: 205 LYPVDERYECEVDDDMAALFHAVPIPEHDNEFDAALRKAGHEPAP-----RRAARPTGHD 259
Query: 251 SKNKPKKKKHEIS--------KRTKLTNAHLPELFQKL 280
S + +K + +R K+TNAHLPELF+ L
Sbjct: 260 SDEEGGGRKRAKAKKKRKVNFERMKVTNAHLPELFKGL 297
>gi|308802245|ref|XP_003078436.1| putative Transcription initiation (ISS) [Ostreococcus tauri]
gi|116056888|emb|CAL53177.1| putative Transcription initiation (ISS) [Ostreococcus tauri]
Length = 288
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 8/206 (3%)
Query: 76 AQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSK 133
A+ K ID L + R+ + +++ + N +FDSLRN+ KV YD F YK+K
Sbjct: 81 AKQKHAIDTLFQQRRPMSNDDLRVFLGFECNVG-PLFDSLRNHEKVDYDEDTGLFRYKAK 139
Query: 134 HDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYP 193
HD+ K +L LV P+G+++ ++ DSY +D AL + LL+N ++++ + +
Sbjct: 140 HDVLCKEDVLELVNSTPDGLSIDEIVDSYVKAKDDALALAEEDAVILLTNTETKQKVLFR 199
Query: 194 NDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKN 253
P ++ + D F ++ +P +D +K L+ G++P R +
Sbjct: 200 KQPEYEVEVNKDFVASFHEVEIPEHDVDFDKALRSQGIEPTP-----RPIYDLGPAPEIV 254
Query: 254 KPKKKKHEISKRTKLTNAHLPELFQK 279
K KKK+ +R +TNAH+PELFQK
Sbjct: 255 KKKKKRQVNFERMNVTNAHMPELFQK 280
>gi|224161615|ref|XP_002338350.1| predicted protein [Populus trichocarpa]
gi|222872003|gb|EEF09134.1| predicted protein [Populus trichocarpa]
Length = 113
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 63/92 (68%)
Query: 190 IAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGI 249
IA P DP+ IK DDDL+ LFR I LP DMLDIEK LQ NGM PA+NT K R AAQ++GI
Sbjct: 21 IACPYDPKSIIKVDDDLRKLFRGIELPRDMLDIEKYLQMNGMMPASNTAKTREAAQVKGI 80
Query: 250 SSKNKPKKKKHEISKRTKLTNAHLPELFQKLN 281
S+ K K KK I K L N HLPEL++ L
Sbjct: 81 FSEKKIKNKKRRIRKIHNLANPHLPELYENLG 112
>gi|303272159|ref|XP_003055441.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463415|gb|EEH60693.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 223
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 113/210 (53%), Gaps = 11/210 (5%)
Query: 79 KRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG--KRFSYKSKHDL 136
KRV+D L +TR+ F E+ + V+ + ++D L +N K+ YD KRFSYK+KH L
Sbjct: 4 KRVMDLLAKTRKPFNAVELRNELGFPVDVPE-LWDMLLHNDKLFYDERVKRFSYKAKHAL 62
Query: 137 KDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYP-ND 195
D+ ++L ++K +G+ V D+ D+Y ++D +AL A + L N ++++ + YP +D
Sbjct: 63 ADRREMLAFIQKRQDGVLVEDVVDAYANALDDAEALIEAKLVMTLHNAETRKRVLYPLDD 122
Query: 196 PRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQ------IQGI 249
+ LF + LP++ + L+ G +PA R + +G
Sbjct: 123 AYEAGDVSETTAGLFHGVELPAEDDAFDAALRAIGEEPAPRRDTRGGKTEDDDEFDAEG- 181
Query: 250 SSKNKPKKKKHEISKRTKLTNAHLPELFQK 279
+ K K KKK+ +R KLTN HLPE+F+K
Sbjct: 182 NRKIKTKKKRAVNFERMKLTNVHLPEMFKK 211
>gi|145344532|ref|XP_001416785.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577011|gb|ABO95078.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 296
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 9/206 (4%)
Query: 76 AQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSK 133
A+ K ID L R+ + +++ D N +F+SL+N+ KV YD + F Y++K
Sbjct: 88 AKQKHAIDTLFAQRRPMSNDDLRVFLGFDCNVG-PLFESLKNHEKVRYDAAKGLFEYRAK 146
Query: 134 HDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQAL-KAAGQIWLLSNFDSQEDIAY 192
HD+ K +L LV P+G+A+ ++ D+Y +D AL + + +L+N ++++ + +
Sbjct: 147 HDVLCKEDVLELVNSTPDGLAIDEIVDAYVKAKDDAIALAEEDDAVIMLTNTETKKKVLF 206
Query: 193 PNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSK 252
P + +D F DI +P +D +K L++ G++P R +
Sbjct: 207 RKQPEYEVDLSEDFVGSFHDIEIPEYDVDFDKALRREGIEPTP-----RPVYDLGPAPEV 261
Query: 253 NKPKKKKHEISKRTKLTNAHLPELFQ 278
K KKK+ +R +TNAH+PELF+
Sbjct: 262 EKKKKKRAVNFERMNVTNAHMPELFK 287
>gi|357505147|ref|XP_003622862.1| Q protein [Medicago truncatula]
gi|355497877|gb|AES79080.1| Q protein [Medicago truncatula]
Length = 417
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 74/147 (50%), Gaps = 43/147 (29%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAA-ASTAARSSPPVKFSND 59
M EKLDRFKKQQEKCQ TL IA+ SR T P AA AS+ R+S
Sbjct: 204 MFAAEKLDRFKKQQEKCQSTLLRIASSKVGSRKPNT--PVVAANASSNGRNS-------- 253
Query: 60 TERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNP 119
+ +PVGAQ+KRVID +LETRQAF PE+IN
Sbjct: 254 ----------KTAPVGAQMKRVIDLVLETRQAFIPEQINE-------------------- 283
Query: 120 KVHYDGKRFSYKSKHDLKDKSQLLVLV 146
+ YDG+RFSYK D S +VL+
Sbjct: 284 ALEYDGQRFSYKV--SFTDGSTYVVLL 308
>gi|358344825|ref|XP_003636487.1| hypothetical protein MTR_042s0029 [Medicago truncatula]
gi|355502422|gb|AES83625.1| hypothetical protein MTR_042s0029 [Medicago truncatula]
Length = 179
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
M EKLDRFKKQQEKCQ TL IA+ SR T A+S S VKFSNDT
Sbjct: 92 MFAAEKLDRFKKQQEKCQSTLFRIASSKVGSRKPNTPVVAANASSNGRNSKTGVKFSNDT 151
Query: 61 ERLQHI-NSIRKSPVGAQIKRVID 83
ERLQ I N+I K+PVGAQ+KRVID
Sbjct: 152 ERLQQINNNICKAPVGAQMKRVID 175
>gi|424513504|emb|CCO66126.1| predicted protein [Bathycoccus prasinos]
Length = 339
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 116/229 (50%), Gaps = 29/229 (12%)
Query: 76 AQIKRVIDRLLETRQAFTPEEINRDCYVDVNANK--AVFDSLRNNPKVHYDGKR--FSYK 131
A+ K ID L TR+ T E+ D + +K +F +L+ N K+ YD KR YK
Sbjct: 106 ARQKATIDCLKRTREQMTNSELKALLGFDTHLDKQSELFLTLKANEKILYDEKRDTLKYK 165
Query: 132 SKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIA 191
K D+++K++LL L+ K +G+ DL DSY V+ D+ L+ +G++W + N ++++ +
Sbjct: 166 PKFDIQNKNELLGLIVKHADGVLEEDLGDSYDGVLVDVMKLEESGKVWRVQNSETRKWVT 225
Query: 192 YPNDPRVPIK----------------------ADDDLKLLFRDIALPSDMLDIEKDLQKN 229
Y PRV + D++ ++ ++ +P + + +K+L+K
Sbjct: 226 Y---PRVSVVDEDGANNKEGEEEEEENVNKELIDEEFVKMYAEVKIPEEEAEFDKELRKA 282
Query: 230 GMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
M+PA R+ + + K KKK+ +R KLTN H+ +LF+
Sbjct: 283 NMEPAAKRSFRKVSREELEAEKKLMKKKKRAPNFERMKLTNVHMKDLFK 331
>gi|224071784|ref|XP_002303573.1| predicted protein [Populus trichocarpa]
gi|222841005|gb|EEE78552.1| predicted protein [Populus trichocarpa]
Length = 104
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 8/89 (8%)
Query: 8 DRFKKQQE-KCQETLSNIAAKSGASRATTTSRPTPAAAS--TAARS-SPPVKFSNDTERL 63
DR K+QQ+ KCQ TL+++A SR T + P AAS T+AR+ +P V+FSNDTERL
Sbjct: 11 DRLKRQQQAKCQSTLTSVAK----SRPNVTQKAFPVAASPSTSARTPAPAVRFSNDTERL 66
Query: 64 QHINSIRKSPVGAQIKRVIDRLLETRQAF 92
QHI+SIRK+P GAQ KRV+D LLE F
Sbjct: 67 QHISSIRKAPAGAQNKRVVDLLLEVTIEF 95
>gi|452822265|gb|EME29286.1| transcription initiation factor TFIIE beta subunit [Galdieria
sulphuraria]
Length = 229
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 112/208 (53%), Gaps = 14/208 (6%)
Query: 73 PVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHY--DGKRFSY 130
P+G + ++ L + + +E+ +VDV A+ + ++L+ NP++ DG R +
Sbjct: 8 PLGLVLLSILQYLQSELRPISLQELKDKLHVDVEADPELKENLKTNPRILIEPDG-RLRW 66
Query: 131 KSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLS---NFDSQ 187
KSK+ L++K L+ ++++ P GI DL D+Y V EDL++L + +LS NF Q
Sbjct: 67 KSKYFLRNKEDLVAVIQRNPVGIDKKDLLDAYKGVEEDLESLLHSQPPQVLSIRNNFYKQ 126
Query: 188 EDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT--NTQKRRAAAQ 245
E +P +P+ +D++ L+ +I +P D +D+ + L G+K + N Q R +
Sbjct: 127 E-FLFPAEPKWFYPVSEDVRQLWYEIRVP-DPVDVHRHLTSRGLKQVSRDNRQPERVVIR 184
Query: 246 IQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ S NK +K + +R +LTN HL
Sbjct: 185 KRPKSYDNKTRK----VGRRARLTNEHL 208
>gi|384498007|gb|EIE88498.1| hypothetical protein RO3G_13209 [Rhizopus delemar RA 99-880]
Length = 206
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 14/178 (7%)
Query: 103 VDVNANKAVFDSLRNNPKVHYDG--KRFSYKSKHDLKDKSQLL-VLVRKFPEG-IAVIDL 158
VD++ N A+++ L NN K+ YD FSYK + +K K LL +L+ K EG + DL
Sbjct: 27 VDISKNPALWEKLVNNEKIEYDSVNNMFSYKPTYQIKSKEDLLSLLISKRKEGGMDYKDL 86
Query: 159 KDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSD 218
KDSY + ++ L G I ++ N D + + ND + D D K ++ +I++P D
Sbjct: 87 KDSYSKLSSAVEELAGEGVILVVRNKDGNPRVLFYNDAQYNTPIDADFKKMWSEISIP-D 145
Query: 219 MLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPEL 276
D+ K L++ G+K +K+ I+++ KPK+ K KR K+TN HL +
Sbjct: 146 ETDLPKALEEAGLKTMEVFEKK--------ITAEVKPKRSKTR-HKRIKITNTHLSHI 194
>gi|325181161|emb|CCA15575.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 386
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 75 GAQIKRVIDRL--LETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKS 132
GA++ +++ L + Q T +I + VD+ + V L+NNPKV G R++Y++
Sbjct: 39 GAKVYNILEYLRKVPMHQPVTIRDIFQHTGVDLGVDDQVDQRLKNNPKVRVIGDRYAYQA 98
Query: 133 KHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAY 192
K+D+K++ QLL ++ + PEGI + DL D Y V DLQ L +G++ + N + ++ Y
Sbjct: 99 KYDIKNQIQLLKMLDRTPEGIPMEDLMDCYVDVERDLQRLARSGEVICVKNAEKGAEVFY 158
Query: 193 PND 195
P D
Sbjct: 159 PRD 161
>gi|449017337|dbj|BAM80739.1| similar to transcription initiation factor TFIIE beta subunit
[Cyanidioschyzon merolae strain 10D]
Length = 259
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 113/215 (52%), Gaps = 16/215 (7%)
Query: 73 PVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKV--HYDGKRFSY 130
P+GAQ+ +V+ L + + +PEEI + + + ++ +L NP+V DG R+ +
Sbjct: 32 PLGAQLHKVLRYLKKELRPVSPEEIEEALQIRLQRDSELWVNLVGNPRVLLESDG-RWRW 90
Query: 131 KSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNF----DS 186
+SK+ L+++ LL L++ EGI V +L+DSY + D++ L L+ F +
Sbjct: 91 RSKYYLRNRDDLLNLLKTSVEGIPVSELQDSYRDALRDIRELAYERNPPLILAFRPSEHT 150
Query: 187 QEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQI 246
+E I +PNDP + ++ + ++ L++ I +P + + LQ+ G+K +N + RAA
Sbjct: 151 KEVILFPNDPTLYVRISEQVRKLWQSIPIPDSSVVYDYLLQR-GLKQGSNHEAVRAALAP 209
Query: 247 QGISSKNKPKKKKH--------EISKRTKLTNAHL 273
G + K++ ++R +LTN HL
Sbjct: 210 TGAQRPPQLKRRARPGARSSGSSSTRRIRLTNVHL 244
>gi|66807005|ref|XP_637225.1| transcription initiation factor IIE2 [Dictyostelium discoideum AX4]
gi|74853087|sp|Q54KJ8.1|T2EB_DICDI RecName: Full=General transcription factor IIE subunit 2; AltName:
Full=Transcription initiation factor IIE subunit beta;
Short=TFIIE-beta
gi|60465642|gb|EAL63721.1| transcription initiation factor IIE2 [Dictyostelium discoideum AX4]
Length = 276
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 140/270 (51%), Gaps = 22/270 (8%)
Query: 10 FKKQQEKCQETLSNIAAKSGASRATTTSRP---TPAAASTAARSSPPVKFSNDTERLQHI 66
FK+ Q K ETL++I S ++ + P +S+A R S ++ +T R + +
Sbjct: 6 FKETQMKAIETLNSIKKPSSSTNSAFKYIPKISGGGGSSSANRQSSI--YTANTLRDKQV 63
Query: 67 NSIRKSPVGAQIKRVIDRL--LETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD 124
++ P + +++ L LE A T E ++ ++ ++ + + LRNN K+
Sbjct: 64 ---KEKPSNRIVYDIVNYLKTLEGIPADTKEIMHSTNHM-IDDKPEILELLRNNEKIIDH 119
Query: 125 GK-RFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSN 183
G RFS+K K +++ + +L L+ +P GI V +L +SY D++ LK QI+ +
Sbjct: 120 GNDRFSFKPKFNVRTQRDILDLLPNYPGGILVSELAESYNNAESDVKKLKETKQIFAIKA 179
Query: 184 FDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAA 243
+S DI +PND R+ + +L +++ I LP++ D+EK+++ G+ + + R
Sbjct: 180 AESACDIIFPNDERLRVPLSSELVDMWKSIKLPNEA-DLEKEMKDAGLSVVESVESAR-- 236
Query: 244 AQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
Q S+K K ++KK + TK+TN H+
Sbjct: 237 ---QTKSTKLKKERKK----RITKVTNTHI 259
>gi|348684090|gb|EGZ23905.1| hypothetical protein PHYSODRAFT_325079 [Phytophthora sojae]
Length = 391
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 75 GAQIKRVIDRL--LETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKS 132
GA++ ++++ L + +A +I + VD+ + V L+NNPKV G +++Y++
Sbjct: 44 GAKVYKILEYLRKVPMHKAVAVADIFKHTGVDLTMDDQVEQRLKNNPKVRVQGDQYAYQA 103
Query: 133 KHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAY 192
K+D+K++ QLL ++ + PEG+ + DL D Y V +DL+ L G+I L N D ++ Y
Sbjct: 104 KYDIKNRMQLLKILDRIPEGMPIEDLIDCYVGVEDDLKELTRTGEIICLKNADKGAEVYY 163
Query: 193 PNDP 196
P
Sbjct: 164 SRGP 167
>gi|213401367|ref|XP_002171456.1| transcription initiation factor IIE subunit beta
[Schizosaccharomyces japonicus yFS275]
gi|211999503|gb|EEB05163.1| transcription initiation factor IIE subunit beta
[Schizosaccharomyces japonicus yFS275]
Length = 285
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 133/295 (45%), Gaps = 47/295 (15%)
Query: 2 ALQEKLDRFKKQQEKCQETLSN--IAAKSGASRATTTSRPTPAAASTAARSSPPVKFSND 59
+L E+L FKK+ ++N I AK R P AA A+RS+ P S
Sbjct: 3 SLSEQLSSFKKK-------VANQPIYAKPQIER--------PTAAYVASRSATPTDVSAT 47
Query: 60 T--------ERLQHINSIRKSP----VG----AQIKRVIDRLLETRQAFTPEEINRDCYV 103
+ ++ N + P VG +Q+ ++ L E + T EEI Y+
Sbjct: 48 SSPAPALGKKKRSKTNLVYSQPADSGVGTHYLSQLHYAVEYLKERNEPKTAEEIA--SYL 105
Query: 104 DVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLV--RKFPEGIAVIDLK 159
+ L+ N ++ YD + F++K H+++ + LL + K G++V +LK
Sbjct: 106 STPLTPMLLQLLKKNDRILYDARHETFTFKPLHNIRSSAGLLAYLDSLKVHAGMSVKELK 165
Query: 160 DSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSD 218
D +P V +L+ L+ G++ LL + D+ + + ND DD+ K ++ +I +P
Sbjct: 166 DGWPNVAAELEELEKRGEVLLLRTKKDAVPKMVWRNDRSCDCHVDDEFKSVWHEIPIPP- 224
Query: 219 MLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
LD+ +L K G+KP + S + KPK ++R K+TN HL
Sbjct: 225 TLDLATELGKYGLKPTAVDPSTVKKKTLMHASKQKKPK------TRRGKITNTHL 273
>gi|281209241|gb|EFA83414.1| transcription initiation factor IIE2 [Polysphondylium pallidum
PN500]
Length = 259
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 136/274 (49%), Gaps = 32/274 (11%)
Query: 5 EKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDTERLQ 64
E L++ KKQ E A + +S P + S A++ P+ S T +Q
Sbjct: 12 ENLEKHKKQDE--------------AKPSFLSSHKRPISNSLASK---PMYLST-TIAMQ 53
Query: 65 HINSIRKSPVGAQIKRVIDRLLETRQAF-TPEEINRDCYVDVNANKAVFDSLRNNPKVHY 123
+ N K + + +++ L ++ T EE+ ++ N+ + D L+ N KV +
Sbjct: 54 NKN---KPSITRMVYDIVNHLKSLEGSYITFEELRDSTGHEIYGNQELIDQLKTNIKVEF 110
Query: 124 -DGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLS 182
+ YK H++KD +L L+ K P GI + DLK+SY V +D++ LK + +I+ +
Sbjct: 111 LNDTTLCYKPLHNVKDDRGILELLSKHPYGIMLSDLKESYLAVEQDVKKLKDSKEIYAVR 170
Query: 183 NFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRA 242
N +S ++ + +D + I DL L++ + +P + +D+E+ ++ G+ +++ A
Sbjct: 171 NSESNSEMLFYSDEKYRIPCSSDLVDLWKSVVMPKE-VDLEQTMKDAGLSMVESSE---A 226
Query: 243 AAQIQGISSKNKPKKKKHEISKRTKLTNAHLPEL 276
A IQ + K KK+ + TK+TN+H+ +
Sbjct: 227 AKTIQAKKVEKKDKKR-----RITKVTNSHIADF 255
>gi|301094131|ref|XP_002997909.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262109695|gb|EEY67747.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 390
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 75 GAQIKRVID--RLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKS 132
GA++ ++++ R + + + +I + VD+ + V L+NNPKV G +++Y++
Sbjct: 43 GAKVYKILEFLRKVPMHKPVSVTDIFKHTGVDLTMDDQVEQRLKNNPKVRLQGDQYAYQA 102
Query: 133 KHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAY 192
K+D+K++ QLL ++ + PEG+ + DL D Y V +DL+ L G+I L N D ++ Y
Sbjct: 103 KYDIKNRMQLLKILDRIPEGMPIEDLIDCYVNVEDDLKELTRTGEIICLKNADKGAEVYY 162
>gi|19075379|ref|NP_587879.1| transcription factor TFIIE beta subunit, TFIIEB, Tfa2
[Schizosaccharomyces pombe 972h-]
gi|20140557|sp|P79011.2|T2EB_SCHPO RecName: Full=Transcription initiation factor IIE subunit beta;
Short=TFIIE-beta
gi|3451309|emb|CAA20446.1| transcription factor TFIIE beta subunit, TFIIEB, Tfa2
[Schizosaccharomyces pombe]
Length = 285
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 20/206 (9%)
Query: 76 AQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD--GKRFSYKSK 133
+Q+ ++ L E + T EEI Y+ + + L+ N +++YD + F++K
Sbjct: 81 SQLHYAVEYLKERNEPKTAEEI--ASYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPL 138
Query: 134 HDLKDKSQLLVLV--RKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDI 190
H+++ + LL + +K G+++ +L+D +P V +L+ L+ G++ LL + D +
Sbjct: 139 HNIRSGAGLLAYLDSQKTHVGMSIKELRDGWPNVTVELEELEKQGEVLLLRTRKDGVPKM 198
Query: 191 AYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT---NTQKRRAAAQIQ 247
+ ND D + + ++ +I +P LD+ +L K G+KP + +T KR Q
Sbjct: 199 VWRNDKSCDCHVDKEFQQVWHEIPIPP-TLDLASELGKYGLKPTSVDPSTVKRAGHNQT- 256
Query: 248 GISSKNKPKKKKHEISKRTKLTNAHL 273
PK+KK + ++R K+TN HL
Sbjct: 257 -------PKQKKPK-TRRGKITNTHL 274
>gi|1834288|dbj|BAA19123.1| S.pombe TFA2 homolog [Schizosaccharomyces pombe]
Length = 224
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 20/206 (9%)
Query: 76 AQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD--GKRFSYKSK 133
+Q+ ++ L E + T EEI Y+ + + L+ N +++YD + F++K
Sbjct: 20 SQLHYAVEYLKERNEPKTAEEIA--SYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPL 77
Query: 134 HDLKDKSQLLVLV--RKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDI 190
H+++ + LL + +K G+++ +L+D +P V +L+ L+ G++ LL + D +
Sbjct: 78 HNIRSGAGLLAYLDSQKTHVGMSIKELRDGWPNVTVELEELEKQGEVLLLRTRKDGVPKM 137
Query: 191 AYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT---NTQKRRAAAQIQ 247
+ ND D + + ++ +I +P LD+ +L K G+KP + +T KR Q
Sbjct: 138 VWRNDKSCDCHVDKEFQQVWHEIPIPP-TLDLASELGKYGLKPTSVDPSTVKRAGHNQT- 195
Query: 248 GISSKNKPKKKKHEISKRTKLTNAHL 273
PK+KK + ++R K+TN HL
Sbjct: 196 -------PKQKKPK-TRRGKITNTHL 213
>gi|56377913|dbj|BAD74159.1| general transcription factor spTFIIE beta subunit
[Schizosaccharomyces pombe]
Length = 285
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 20/206 (9%)
Query: 76 AQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD--GKRFSYKSK 133
+Q+ ++ L E + T EEI Y+ + + L+ N +++YD + F++K
Sbjct: 81 SQLHYAVEYLKERNEPKTAEEI--ASYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPL 138
Query: 134 HDLKDKSQLLVLV--RKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDI 190
H+++ + LL + +K G+++ +L+D +P V +L+ L+ G++ LL + D +
Sbjct: 139 HNIRSGAGLLAYLDSQKTHVGMSIKELRDGWPNVTVELEELEKQGEVLLLRTRKDGVPKM 198
Query: 191 AYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT---NTQKRRAAAQIQ 247
+ ND D + + ++ +I +P LD+ +L K G+K + +T KR Q
Sbjct: 199 VWRNDKSCDCHVDKEFQQVWHEIPIPP-TLDLASELGKYGLKATSVDPSTVKRAGHNQT- 256
Query: 248 GISSKNKPKKKKHEISKRTKLTNAHL 273
PK+KK + ++R K+TN HL
Sbjct: 257 -------PKQKKPK-TRRGKITNTHL 274
>gi|330797975|ref|XP_003287032.1| hypothetical protein DICPUDRAFT_31794 [Dictyostelium purpureum]
gi|325082995|gb|EGC36460.1| hypothetical protein DICPUDRAFT_31794 [Dictyostelium purpureum]
Length = 282
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 92/166 (55%), Gaps = 15/166 (9%)
Query: 111 VFDSLRNNPKV--HYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMED 168
+ + LRNNPKV H D K FSYK ++K+ ++L LV K P GI D+ +SY D
Sbjct: 111 ILELLRNNPKVIDHGDDK-FSYKPLFNVKNIKEILELVNKHPGGILASDIAESYNQAEAD 169
Query: 169 LQALKAAGQIWLLSNFDSQE-DIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQ 227
++ LK Q++ + + D+ D+ +PND + + +L +++ I +P++ D+EK+++
Sbjct: 170 VKKLKETKQVYAIKSSDNTHIDMLFPNDEKYRVPVSQELIDMWKSIKVPTEA-DLEKEMK 228
Query: 228 KNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
G+ +A I+ IS + K ++K + TK+TN H+
Sbjct: 229 DAGLSVV------ESAETIKVISREKKKERK----KRITKVTNTHI 264
>gi|328866280|gb|EGG14665.1| transcription initiation factor IIE2 [Dictyostelium fasciculatum]
Length = 272
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 108/208 (51%), Gaps = 13/208 (6%)
Query: 70 RKSPVGAQIKRVIDRL--LETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHY-DGK 126
+K+P G I V+ L LE R A E + + ++ ++ V D L+ N KV + D
Sbjct: 57 KKTPTGRIIFDVVIHLRSLEGRPATLEELMISTGHKEIIDSQLVQDELKQNEKVEFLDST 116
Query: 127 RFSYKSKHDLKDKSQLLVLVRK-FPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFD 185
+K + +K +++ L+++ P GI + L +SY V +D++ LK + +I+ + N +
Sbjct: 117 TVRFKPLYRVKTPEEIVDLLKEENPRGIPLNKLTESYAKVGDDVKKLKESKEIYTIKNTE 176
Query: 186 SQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQ 245
+I + ND + I D+L ++++I +P+D +D+ K ++ G+ + + +
Sbjct: 177 LNTEILFYNDEKYRIPVSDELIKMWKNIPIPND-VDLVKTMKDIGLSVVESVEAAKTTK- 234
Query: 246 IQGISSKNKPKKKKHEISKRTKLTNAHL 273
SSK ++KH I TK+TN H+
Sbjct: 235 ----SSKAGKSERKHRI---TKVTNVHI 255
>gi|159465737|ref|XP_001691079.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279765|gb|EDP05525.1| predicted protein [Chlamydomonas reinhardtii]
Length = 224
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 104/216 (48%), Gaps = 17/216 (7%)
Query: 77 QIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG--KRFSYKSK- 133
++KRV+D L R FT ++ +D++ + + + L+++ +V YDG + Y+ K
Sbjct: 2 RLKRVLDLLRSNRDTFTFADLKAKLNMDLSQDTELLEHLQSHTQVTYDGVDRTLRYRPKV 61
Query: 134 HDLKDKSQLLVLVRKFPE-----------GIAVIDLKDSYPTVMEDLQALKAAGQIWLLS 182
+ + + LL +R+ G+ + D+ D+Y + +D++ L+A G I +L
Sbjct: 62 QGISNSTDLLNYLRRHTTVEGASAAVPMTGVRLGDIADAYLNIADDIKRLQAEGSICVLG 121
Query: 183 NFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRA 242
+ + + + A + + LF + LP DM+D++ + G+K A ++ R
Sbjct: 122 HTSAGSETLFAVQSMGMAPASEAVFELFHNTRLPVDMIDMQWRCKDLGLKSALASRPARI 181
Query: 243 AAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
+ K K +++ + K TNAH+ ELF+
Sbjct: 182 KDDSKDKKKKRKRTERRFNVEKA---TNAHMRELFE 214
>gi|320163025|gb|EFW39924.1| hypothetical protein CAOG_00449 [Capsaspora owczarzaki ATCC 30864]
Length = 337
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 17/159 (10%)
Query: 122 HYDGKRFSYKSKHDLKDKSQLLVLVRKF-PEGIAVI---DLKDSYPTVMEDLQALKAAGQ 177
H DGK F YK K+ + K +LL L+R + +G+ I +L Y +D+ L+A +
Sbjct: 181 HVDGK-FRYKPKYAVGSKDELLELLRSYYMQGLGGIKQSELLQCYREAADDVMQLQADNR 239
Query: 178 IWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNT 237
I++L E I + NDPR+ + D++ K L+ I LP L ++ +L+ ++P
Sbjct: 240 IYVLKPTKGTEMILFYNDPRLRVDVDEEFKDLWSKIQLP---LSVDAELRAAQLQPLK-- 294
Query: 238 QKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPEL 276
A + +NK KK+ K TK TN HL L
Sbjct: 295 -----VALPNSVEEQNKAKKQTAR--KITKFTNTHLQNL 326
>gi|428178930|gb|EKX47803.1| hypothetical protein GUITHDRAFT_106357 [Guillardia theta CCMP2712]
Length = 419
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 104/203 (51%), Gaps = 22/203 (10%)
Query: 85 LLETRQAFTPEEI-NRDCYVDVNA-----NKAVFDSLRNNPKVHYD----GKR-FSYKSK 133
L R+ T +EI N C D+++ +A+FD+LRNN + + G+ +SYK+
Sbjct: 220 LSRVRKECTSQEISNEICVGDLHSIVDPEGRALFDTLRNNKFISCELSESGEYVWSYKAM 279
Query: 134 HDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYP 193
+L ++ LL ++ P G+ D+Y V D+++LK + +I+ + N +S+ + +P
Sbjct: 280 LELSNRQNLLEVILNTPCGMKEPSENDAYNGVEGDVKSLKESHEIYAIQNAESRNTLLFP 339
Query: 194 NDPRVPIKADDDLKLLFRDIALPSDML---DIEKDLQKNGMKPATNTQKRRAAAQIQGIS 250
+ I+ DDD+K L+ + P + L + E L++ G+ P K+ A ++ G+
Sbjct: 340 RHKHLEIQVDDDIKKLWEENE-PRNQLTQEEQEHQLKQEGLIPT----KQEKAQKLTGVK 394
Query: 251 SKNKPKKKKHEISKRTKLTNAHL 273
K ++K S + +AHL
Sbjct: 395 RKATVTRRK---SAKKMHQHAHL 414
>gi|294947635|ref|XP_002785429.1| hypothetical protein Pmar_PMAR026659 [Perkinsus marinus ATCC 50983]
gi|239899317|gb|EER17225.1| hypothetical protein Pmar_PMAR026659 [Perkinsus marinus ATCC 50983]
Length = 289
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 73 PVGAQIKRVIDRLLET-RQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD--GKRFS 129
PV + +K V+D L + Q FT +I R + AV L+NNPK+ YD +R+
Sbjct: 11 PVESIVKVVLDMLKQHPNQEFTDSQIERTTRERIIGQPAVVGMLQNNPKIDYDPTTRRYK 70
Query: 130 YKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQAL 172
+K +DL+DK QLL L+ P + +L +SYP + ED+ +L
Sbjct: 71 FKPHYDLRDKQQLLQLLHSRPTLMVDPNLLESYPGIDEDISSL 113
>gi|294949388|ref|XP_002786172.1| hypothetical protein Pmar_PMAR019850 [Perkinsus marinus ATCC 50983]
gi|239900329|gb|EER17968.1| hypothetical protein Pmar_PMAR019850 [Perkinsus marinus ATCC 50983]
Length = 259
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 73 PVGAQIKRVIDRLLET-RQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD--GKRFS 129
PV + +K V+D L + Q FT +I R + AV L+NNPK+ YD +R+
Sbjct: 11 PVESIVKVVLDMLKQHPNQEFTDSQIERTTRERIIGQPAVVGMLQNNPKIDYDPTTRRYK 70
Query: 130 YKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQAL 172
++ +DL+DK QLL L+ P + +L +SYP + ED+ +L
Sbjct: 71 FRPHYDLRDKQQLLQLLHSRPTLMVDPNLLESYPGIDEDISSL 113
>gi|302833511|ref|XP_002948319.1| hypothetical protein VOLCADRAFT_116761 [Volvox carteri f.
nagariensis]
gi|300266539|gb|EFJ50726.1| hypothetical protein VOLCADRAFT_116761 [Volvox carteri f.
nagariensis]
Length = 273
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 19/202 (9%)
Query: 77 QIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSKHDL 136
++KRV+D L R A T +I +VD++ + + D L ++ V YD + + +
Sbjct: 81 RLKRVLDLLRLNRDAHTFADIRTKLHVDLSVDSELLDQLSSHSHVTYDTIHHTLRYRP-- 138
Query: 137 KDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDP 196
K S + + G+ V D+ D+Y +M+D++ L+A G +++ N + D+ Y
Sbjct: 139 KGASSAVPMT-----GVRVADIADAYLAIMDDIKRLQAEGSVYVFGNTTASGDVVYAVQN 193
Query: 197 RVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPK 256
+ + +F + LP D+++++ + G+K A T+ K K +
Sbjct: 194 MNIGPVSESVVEMFHNTRLPVDIVELQWRARDLGLKSALATRP------------KKKKR 241
Query: 257 KKKHEISKRTKLTNAHLPELFQ 278
+K K TNAH+ ELF+
Sbjct: 242 RKVERKFNVDKATNAHMRELFE 263
>gi|281205063|gb|EFA79256.1| hypothetical protein PPL_07674 [Polysphondylium pallidum PN500]
Length = 202
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 97/191 (50%), Gaps = 11/191 (5%)
Query: 84 RLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHY-DGKRFSYKSKHDLKDKSQL 142
+LLE Q T E++ ++ N + SL+ N + + + K Y ++ +K+++ +
Sbjct: 15 KLLEG-QYITFEDLYNSTGHNLYNNHLLLQSLKQNTFIEFLNDKTLRYIPQYQVKNQNDI 73
Query: 143 LVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKA 202
L L+ + PEGI + DLK SY D+ LK + I+ + + +S+ + Y ND + +
Sbjct: 74 LELLSRQPEGILLEDLKASYANAENDVNKLKQSKSIYSVISSNSKSEKIYYNDEKYRVPC 133
Query: 203 DDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEI 262
D+L L+ + +P ++ D+E +++ G+ P + + I KN K++K
Sbjct: 134 SDELVRLWGSVEVPIEV-DLENVMREAGLTPVEKYETTKT------IKVKNVEKQEKKRR 186
Query: 263 SKRTKLTNAHL 273
K K+TN H+
Sbjct: 187 IK--KVTNTHI 195
>gi|398405646|ref|XP_003854289.1| hypothetical protein MYCGRDRAFT_108767 [Zymoseptoria tritici
IPO323]
gi|339474172|gb|EGP89265.1| hypothetical protein MYCGRDRAFT_108767 [Zymoseptoria tritici
IPO323]
Length = 287
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 137/306 (44%), Gaps = 46/306 (15%)
Query: 1 MALQEKLDRFKKQQEKCQETLSNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDT 60
MALQ L +FK E T N++ SR ++T+ PA ST + S P + D
Sbjct: 1 MALQGSLAKFK--SEYADATSRNVSQ----SRPSSTA---PARISTP-KPSTPAPATVDL 50
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRL------LETR--QAFTPEEINRDCYVDVNANKAV- 111
+ H + +P G ++ ++ L+++ QA +E+ R + ++A K +
Sbjct: 51 TKRSHETAF-AAPSGGSGNELLTQVNFAVGYLKSKNPQALPFDELIRHLSLPLDAQKNIP 109
Query: 112 --FDSLRNNPKVHYDGKR--------FSYKSKHDLKDKSQLL-VLVRKF-PEGIAVIDLK 159
+L N +V + K F Y+ +H + + +L L R+ GI V +LK
Sbjct: 110 FIRTALAGNERVQFVSKSESGNGHDSFRYRPQHPVTNAEELKNYLARQITARGIPVKELK 169
Query: 160 DSYPTVMEDLQALKAAGQIWLLSNF--DSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS 217
D +P + + AL+ G I L++ D+ + +P+ P + DDD + + LP
Sbjct: 170 DGWPGCIPAIDALEKEGAI-LVTRLTKDNTPKMVWPDSPSYHVHIDDDFREFWNKTKLPP 228
Query: 218 DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR--TKLTNAHLPE 275
+I +L+K G+ P +Q++ + + KK + ++R K TN+H+
Sbjct: 229 TETEIRTELEKAGLTP---------TSQVKETNKTDNKKKDRKRPNRRGGMKTTNSHMTG 279
Query: 276 LFQKLN 281
+ + N
Sbjct: 280 ILKDYN 285
>gi|449302289|gb|EMC98298.1| hypothetical protein BAUCODRAFT_121175 [Baudoinia compniacensis
UAMH 10762]
Length = 286
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 127/268 (47%), Gaps = 32/268 (11%)
Query: 30 ASRATTTSRPTPAA--ASTAARSSPPVKFSNDTERLQHINSIRKSPVGAQIKRVIDRL-- 85
A RA +R P + A+ AR+S P E+ H + +P G K V++ +
Sbjct: 12 ADRAEAAARNLPQSRPAAAPARTSTPKPAPAPPEKRTHDAAFPAAPTGEIFKVVVNTVEY 71
Query: 86 LETRQAF-TP-EEINRDCYVDVNANK---AVFDSLRNNPKVH---YDGKR-FSYKSKHDL 136
L+ + A P EEI R + V+ + + +LR + +V DGK F Y+ +HD+
Sbjct: 72 LKGKNAAPVPFEEIIRYLSLPVDLQRKQETIKRALRTHNRVQQITIDGKESFKYRPQHDV 131
Query: 137 KDKSQLL-VLVRK-FPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSN-FDSQEDIAYP 193
+ +LL L R+ GI V +LKD +P + L+ L+A GQ+ L SN D + Y
Sbjct: 132 TNGDELLSYLARQDSAAGIPVKELKDGWPDCVPTLKRLEADGQVLLTSNKKDGVPRVVYA 191
Query: 194 NDPRVPIKADDDLKL--------LFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQ 245
+DP + LK + I LP++ DI +L++ G+ P + A +
Sbjct: 192 DDPSYYPASTSSLKGAVDPEFVDFWSKIRLPANENDIRVELERAGLTPTS------AVRE 245
Query: 246 IQGISSKNKPKKKKHEISKRTKLTNAHL 273
++ + + K KK++ E K K TN HL
Sbjct: 246 VKKVEMR-KDKKRRAE-KKNAKKTNVHL 271
>gi|307107895|gb|EFN56136.1| hypothetical protein CHLNCDRAFT_144778 [Chlorella variabilis]
Length = 304
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 109/214 (50%), Gaps = 23/214 (10%)
Query: 73 PVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK-VHYDGKRFSYK 131
P+GA++K ++D L + P+ I D A++ + ++L N K V D ++Y+
Sbjct: 94 PLGAKLKSIVDFLRTAAEPQRPQAIAAATGYDPQADRKLAEALAVNSKVVARDDGLYAYR 153
Query: 132 SK-HDLKDKSQLLVLVRKF---PEGIAVI-DLKDSYPTVMEDLQALKAAGQIWLLSNFD- 185
+ ++ K ++L +R+ EG A + +L+D+YP V DL+ LK G + L D
Sbjct: 154 PEVANVHSKQEVLEYMRRRERQSEGYAALGELQDAYPGVQRDLEELKKEGLLLSLPAADV 213
Query: 186 SQEDIAYPNDPRVPIKADDDLKLLFRDIA--LPSDMLDIEKDLQKNGMKPATNTQKRRAA 243
+++++ YP D R+ L+ L+ I LP + ++++ LQ+ G+KPA
Sbjct: 214 TRKEVYYPVDQRI------KLRELWLSIGEQLPDEEDELQEALQQIGLKPAPR------- 260
Query: 244 AQIQGISSKNKPKKKKHEISKRTKLTNAHLPELF 277
Q+ + K+K ++ + TK+TN HL L
Sbjct: 261 -QVLEKREAREKKRKARKVRRLTKVTNMHLKHLL 293
>gi|224049137|ref|XP_002196086.1| PREDICTED: general transcription factor IIE subunit 2-like
[Taeniopygia guttata]
Length = 291
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 96 LTLEEILDETQHLDIGLKQKQWLMSEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 155
Query: 148 KFPE----GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKAD 203
K + GI + D+++ P +A+KA G + N ++ I + ND D
Sbjct: 156 KHDQRGLGGILLEDIEEGLPNAQ---KAIKALGDQIIFVNRPDKKKILFYNDKSCHFAVD 212
Query: 204 DDLKLLFRDIALPSDMLD---IEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKH 260
++ + L+R I P D +D IE+ L++ G+ T +R A I + KP +K
Sbjct: 213 EEFQKLWRSI--PVDSMDEEKIEEYLKRQGISSMQETGPKRIAP----IQRRKKPASQK- 265
Query: 261 EISKRTKLTNAHL 273
+R K N HL
Sbjct: 266 --KRRFKTHNDHL 276
>gi|156042207|ref|XP_001587661.1| hypothetical protein SS1G_11654 [Sclerotinia sclerotiorum 1980]
gi|154696037|gb|EDN95775.1| hypothetical protein SS1G_11654 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 297
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 136/299 (45%), Gaps = 43/299 (14%)
Query: 10 FKKQQEKCQETLSNIAAKSGASRAT---TTSRPTPAAASTAARSSPPVKFSNDTERLQHI 66
+KQQ Q+ + N + K + R T + P P+ AS ++S + D +R +
Sbjct: 5 LEKQQAAFQKGIQNTSTKITSKRPTAPVSVPSPAPSNASNTSKSE-----NKDAKRKREA 59
Query: 67 NSIRKSPVGA---------QIKRVIDRLLETRQAFTPEEIN---RDCYVDVNANKAVFDS 114
+++ S A Q+ VI+ L + + T +EI +V+ + + +
Sbjct: 60 SNVVYSQPAATGYGTEAFTQVTYVIEFLKKKDEPKTFQEILGYLSQAHVEQSKKQLIAQI 119
Query: 115 LRNNPKVHY-----------DGKRFSYKSKHDLKDKSQLLVLVRKFP--EGIAVIDLKDS 161
LR + +V + D F ++ +++K LL ++ P +G++V DLKD
Sbjct: 120 LRRHDRVQWIADPKLKTQTWDSGTFKHRPIIGVRNKGALLSYLQNKPDAQGVSVKDLKDG 179
Query: 162 YPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDML 220
+P E + L+A +I + + D+ + + NDP + + + ++++ LPS +
Sbjct: 180 WPDCEEAINELEAEHKILVTRTKKDNHARMVWINDPSLIHPVESEFQVMWHRTELPS-VD 238
Query: 221 DIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR-TKLTNAHLPELFQ 278
D+ + L + G KPA+ +R I + KPK+KK + ++ + TN H+ L
Sbjct: 239 DLVRKLLEAGQKPASEDPSKR-------IKATPKPKEKKRKAPRKGGRTTNTHMQHLLH 290
>gi|315053963|ref|XP_003176356.1| transcription initiation factor IIE subunit beta [Arthroderma
gypseum CBS 118893]
gi|311338202|gb|EFQ97404.1| transcription initiation factor IIE subunit beta [Arthroderma
gypseum CBS 118893]
Length = 291
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 93/176 (52%), Gaps = 24/176 (13%)
Query: 115 LRNNPKVHYD-----GK-RFSYKSKHDLKDKSQLL--VLVRKFPEGIAVIDLKDSYPTVM 166
L+++ KV YD G+ F ++ H+++ QLL + +K +G++V DL++ +PT++
Sbjct: 121 LQSHDKVQYDPAGANGEGTFQFRPPHNIRSADQLLQHLQSQKTAQGMSVRDLREGWPTIV 180
Query: 167 EDLQALKAAGQIWLLSN-FDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKD 225
E + L+ G++ + N D+ + + NDP + K D + ++ + +P D + ++
Sbjct: 181 ETINKLEKEGKLLVTRNKKDNHPKMIWANDPSLSQKFDPEFCQIWEKVKIP-DHQTVMEE 239
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISK---RTKLTNAHLPELFQ 278
L+K G+ P T K +AA K +PK ++ ++ K K TN H+ + +
Sbjct: 240 LEKAGITP---TSKHKAA--------KTRPKVEQKKVKKARRSGKTTNTHMAGILR 284
>gi|224140833|ref|XP_002323783.1| predicted protein [Populus trichocarpa]
gi|222866785|gb|EEF03916.1| predicted protein [Populus trichocarpa]
Length = 55
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 40/52 (76%)
Query: 229 NGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKL 280
NGMKP TNT KRRAA Q QGISSK K K KKH I + T LTNAHLP+LF+ L
Sbjct: 2 NGMKPTTNTAKRRAADQFQGISSKKKIKNKKHRIRQITNLTNAHLPKLFKNL 53
>gi|169607084|ref|XP_001796962.1| hypothetical protein SNOG_06595 [Phaeosphaeria nodorum SN15]
gi|160707151|gb|EAT86426.2| hypothetical protein SNOG_06595 [Phaeosphaeria nodorum SN15]
Length = 358
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 128 FSYKSKHDLKDKSQLLVLVR--KFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFD 185
+ YK K D+++ +QL ++ K +G+++ DLKD + TV +D++ ++ ++ + D
Sbjct: 208 YRYKPKLDIRNPAQLKGYLQNQKSAQGLSIKDLKDGWATVADDIKGMEDKKEVLVKRAKD 267
Query: 186 SQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQ 245
I + NDP + D + + IA+P++ D+ L G+ A+ A Q
Sbjct: 268 GVAKIVWDNDPSLMHPMDPEFMNEWHKIAIPANPDDLRATLMNVGLHAAS------APRQ 321
Query: 246 IQGISSKNKPKKKKHEISKR-TKLTNAHLPELFQKLNG 282
I G PK+KK ++R K TN H+ + + +G
Sbjct: 322 ING----GGPKQKKKRAARRGGKQTNTHMMHILKDFSG 355
>gi|425768668|gb|EKV07186.1| Transcription initiation factor TFIIE, beta subunit, putative
[Penicillium digitatum PHI26]
gi|425775962|gb|EKV14202.1| Transcription initiation factor TFIIE, beta subunit, putative
[Penicillium digitatum Pd1]
Length = 293
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 79/154 (51%), Gaps = 12/154 (7%)
Query: 128 FSYKSKHDLKDKSQLL--VLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNF- 184
F ++ H++++ QLL + +K G++V +L++ +PTV E++ ++ G++ + N
Sbjct: 142 FRFRPPHNIRNSEQLLKHLQAQKTAAGMSVRELREGWPTVEEEINQMETEGKLLVTRNKK 201
Query: 185 DSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAA 244
D + +PNDP + DD+ K ++ I +P D ++++L K G+ P TN K
Sbjct: 202 DDHPKMVWPNDPSLIEHFDDEFKQIWDKIKVP-DANIVKEELDKFGITP-TNKNKVLGPR 259
Query: 245 QIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
I P KK + + K TN H+ + +
Sbjct: 260 VI-------APSKKSKKPRRSGKTTNTHMTSILR 286
>gi|328766434|gb|EGF76488.1| hypothetical protein BATDEDRAFT_92664 [Batrachochytrium
dendrobatidis JAM81]
Length = 275
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 29/220 (13%)
Query: 73 PVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDG--KRFSY 130
PV ++ +I L + T ++ R +D+ ++ +FD +RNN ++ YDG F Y
Sbjct: 52 PVARKLFDIIMLLKAEEKPLTNNDMVRKLAMDIMDDEELFDLVRNNERIFYDGVNGTFEY 111
Query: 131 KSK---------------HDLKDKSQLLVLVRKFPE--GIAVIDLKDSYPTVMEDLQALK 173
++ + ++ K LL L++K + G+ V +LKDS + ++ L
Sbjct: 112 RASLIEFEYCVGIWACPTYKIRSKEDLLELLKKNRDTTGMEVKELKDSCNGIFGYIEELD 171
Query: 174 AAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKP 233
A I ++ N D I Y N+ ++ + + K + +ALP + DI K+L G+K
Sbjct: 172 AEKSILIIRNRDESPRIVYYNNNQLHVDICKEFKEYWHQVALPLEA-DISKELASAGLKS 230
Query: 234 ATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
++A QG + +K + KLTN HL
Sbjct: 231 MEVIVMHKSA---QGKAKTKAKRKTRF------KLTNTHL 261
>gi|431902281|gb|ELK08782.1| General transcription factor IIE subunit 2 [Pteropus alecto]
Length = 293
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 95/193 (49%), Gaps = 13/193 (6%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 98 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNLKDKKALLRLLD 157
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
K + G+ I L+D + +A+KA G + N ++ I + ND D++
Sbjct: 158 KHDQRGLGGILLEDIEEGLPNSQKAVKALGDQIIFVNRPDKKKILFFNDKSCQFSVDEEF 217
Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
+ L+R + + S D IE+ L++ G+ + ++ A I + KP +K +R
Sbjct: 218 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAP----IQRRKKPASQK---KRR 270
Query: 266 TKLTNAHLPELFQ 278
K N HL + Q
Sbjct: 271 FKTHNEHLAGVLQ 283
>gi|291386100|ref|XP_002709584.1| PREDICTED: general transcription factor IIE, polypeptide 2, beta
34kDa [Oryctolagus cuniculus]
Length = 253
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ ++++K K+DLKDK LL L+ + + G+ I L+D + +A
Sbjct: 84 EALVNNPKIEVIDGKYAFKPKYDLKDKKALLRLLDQHDQRGLGGILLEDIEEGLPNSQKA 143
Query: 172 LKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNG 230
+KA G L N ++ I + ND D++ + L+R + + S D IE+ L++ G
Sbjct: 144 VKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQG 203
Query: 231 MKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ + ++ A I + KP +K +R K N HL
Sbjct: 204 ISSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHL 239
>gi|410956135|ref|XP_003984700.1| PREDICTED: general transcription factor IIE subunit 2-like [Felis
catus]
Length = 291
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 97 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNLKDKKALLRLLD 156
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
K + G+ I L+D + +A+KA G L N ++ I + ND D++
Sbjct: 157 KHDQRGLGGILLEDIEEGLPNSQKAIKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 216
Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
+ L+R + + S D IE+ L++ G+ + ++ A I + KP +K +R
Sbjct: 217 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAP----IQRRKKPASQK---KRR 269
Query: 266 TKLTNAHL 273
K N HL
Sbjct: 270 FKTHNEHL 277
>gi|355693882|gb|AER99484.1| proteinral transcription factor IIE, polypeptide 2, beta 34kDa
[Mustela putorius furo]
Length = 292
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 99 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNLKDKKALLRLLD 158
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
K + G+ I L+D + +A+KA G L N ++ I + ND D++
Sbjct: 159 KHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 218
Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
+ L+R + + S D IE+ L++ G+ + ++ A I + KP +K +R
Sbjct: 219 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAP----IQRRKKPASQK---KRR 271
Query: 266 TKLTNAHL 273
K N HL
Sbjct: 272 FKTHNEHL 279
>gi|349501098|ref|NP_001231790.1| general transcription factor IIE, polypeptide 2, beta 34kDa [Sus
scrofa]
Length = 291
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 97 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNLKDKKALLRLLD 156
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
K + G+ I L+D + +A+KA G L N ++ I + ND D++
Sbjct: 157 KHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 216
Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
+ L+R + + S D IE+ L++ G+ + ++ A I + KP +K +R
Sbjct: 217 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAP----IQRRKKPASQK---KRR 269
Query: 266 TKLTNAHL 273
K N HL
Sbjct: 270 FKTHNEHL 277
>gi|149742593|ref|XP_001495603.1| PREDICTED: general transcription factor IIE subunit 2-like [Equus
caballus]
Length = 290
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 96 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNLKDKKALLRLLD 155
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
K + G+ I L+D + +A+KA G L N ++ I + ND D++
Sbjct: 156 KHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 215
Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
+ L+R + + S D IE+ L++ G+ + ++ A I + KP +K +R
Sbjct: 216 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAP----IQRRKKPASQK---KRR 268
Query: 266 TKLTNAHL 273
K N HL
Sbjct: 269 FKTHNEHL 276
>gi|444516844|gb|ELV11296.1| Glutathione reductase, mitochondrial [Tupaia chinensis]
Length = 524
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 9/167 (5%)
Query: 114 SLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQAL 172
+L NNPK+ ++++K K++LKDK LL L+ K + G+ I L+D + +A+
Sbjct: 356 ALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGLPNSQKAV 415
Query: 173 KAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNGM 231
KA G L N ++ I + ND D++ + L+R + + S D IE+ L++ G+
Sbjct: 416 KALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQGI 475
Query: 232 KPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
+ ++ A I + KP +K +R K N HL + +
Sbjct: 476 SSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHLAGVLK 515
>gi|228298|prf||1802387B transcription factor IIE:SUBUNIT=small 34kD
Length = 291
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ Y ++++K K++ +DK LL L+ + + G+ I L+D + +A
Sbjct: 122 EALYNNPKIEYIDGKYAFKPKYNYRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKA 181
Query: 172 LKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNG 230
+KA G L N ++ I + ND D++ + L+R + + S D IE+ L++ G
Sbjct: 182 VKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQG 241
Query: 231 MKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ + ++ A I + KP +K +R K N HL
Sbjct: 242 ISSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHL 277
>gi|449283378|gb|EMC90037.1| General transcription factor IIE subunit 2 [Columba livia]
Length = 291
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 96 LTLEEILDETQHLDIGLKQKQWLMSEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 155
Query: 148 KFPE----GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKAD 203
K + GI + D+++ P +A+KA G + N ++ I + ND D
Sbjct: 156 KHDQRGLGGILLEDIEEGLPNAQ---KAIKALGDQIIFVNRPDKKKILFYNDKSCQFTVD 212
Query: 204 DDLKLLFRDIALPSDMLD---IEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKH 260
++ + L+R I P D +D IE+ L++ G+ + ++ A I + KP +K
Sbjct: 213 EEFQKLWRSI--PVDSMDEEKIEEYLKRQGISSMQDAGPKKIAP----IQRRKKPASQK- 265
Query: 261 EISKRTKLTNAHL 273
+R K N HL
Sbjct: 266 --KRRFKTHNDHL 276
>gi|395850277|ref|XP_003797720.1| PREDICTED: general transcription factor IIE subunit 2-like
[Otolemur garnettii]
Length = 292
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 13/188 (6%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 98 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNLKDKKALLRLLD 157
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
+ + G+ I L+D + +A+KA G L N ++ I + ND D++
Sbjct: 158 QHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 217
Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
+ L+R + + S D IE+ L++ G+ + ++ A+ I + KP +K +R
Sbjct: 218 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAS----IQRRKKPASQK---KRR 270
Query: 266 TKLTNAHL 273
K N HL
Sbjct: 271 FKTHNEHL 278
>gi|301770905|ref|XP_002920868.1| PREDICTED: general transcription factor IIE subunit 2-like
[Ailuropoda melanoleuca]
gi|281347422|gb|EFB23006.1| hypothetical protein PANDA_009680 [Ailuropoda melanoleuca]
Length = 290
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 96 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNLKDKKALLRLLD 155
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
K + G+ I L+D + +A+KA G L N ++ I + ND D++
Sbjct: 156 KHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 215
Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
+ L+R + + S D IE+ L++ G+ + ++ A I + KP +K +R
Sbjct: 216 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAP----IQRRKKPASQK---KRR 268
Query: 266 TKLTNAHL 273
K N HL
Sbjct: 269 FKTHNEHL 276
>gi|348578306|ref|XP_003474924.1| PREDICTED: general transcription factor IIE subunit 2-like [Cavia
porcellus]
Length = 293
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ ++++K K+DLKDK LL L+ + + G+ I L+D + +A
Sbjct: 124 EALVNNPKIEVIDGKYAFKPKYDLKDKRALLRLLDQHDQRGLGGILLEDIEEGLPNSQKA 183
Query: 172 LKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNG 230
+KA G L N ++ I + ND D++ + L+R + + S D IE+ L++ G
Sbjct: 184 VKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQG 243
Query: 231 MKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ + ++ A I + KP +K +R K N H+
Sbjct: 244 ISSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHM 279
>gi|345315933|ref|XP_001520210.2| PREDICTED: general transcription factor IIE subunit 2-like, partial
[Ornithorhynchus anatinus]
Length = 298
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 19/173 (10%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMED 168
++L NNPK+ ++++K K++LKDK LL L+ K + GI + D+++ P +
Sbjct: 66 EALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGLPNAQKA 125
Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IEKD 225
++AL QI ++ D ++ I + ND D++ + L+R I P D +D IE+
Sbjct: 126 IKAL--GDQIIFVTRPDKKK-ILFFNDKSCQFTVDEEFQKLWRSI--PVDSMDEEKIEEY 180
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
L++ G+ + ++ A I + KP +K +R K N HL + Q
Sbjct: 181 LKRQGISSMQESGPKKMAP----IQRRKKPASQK---KRRFKTHNDHLAGVLQ 226
>gi|432099991|gb|ELK28885.1| General transcription factor IIE subunit 2 [Myotis davidii]
Length = 311
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 117 LTLEEILDETQHLDIGLKQKQWLMSEALVNNPKIEVIDGKYAFKPKYNLKDKKALLRLLD 176
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
K + G+ I L+D + +A+KA G L N ++ I + ND D++
Sbjct: 177 KHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 236
Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
+ L+R + + S D IE+ L++ G+ + ++ A I + KP +K +R
Sbjct: 237 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAP----IQRRKKPASQK---KRR 289
Query: 266 TKLTNAHL 273
K N H+
Sbjct: 290 FKTHNEHM 297
>gi|395541847|ref|XP_003772848.1| PREDICTED: general transcription factor IIE subunit 2-like
[Sarcophilus harrisii]
Length = 245
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 20/216 (9%)
Query: 68 SIRKSPVGAQIKRVIDRLLET-RQAFTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVH 122
S+R++P A I++ R T EEI + ++D+ + + ++L NNPK+
Sbjct: 25 SLRRAPGKASIRKKQTRHQRGDTHPLTLEEILDETQHLDIGLKQKQWLMSEALVNNPKIE 84
Query: 123 YDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMEDLQALKAAGQI 178
++++K K++LKDK LL L+ K + GI + D+++ P + ++AL QI
Sbjct: 85 VVDGKYAFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGLPNAQKAIKAL--GDQI 142
Query: 179 WLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNGMKPATNT 237
++ D ++ I + ND D++ + L+R I + S D IE+ L++ G+ +
Sbjct: 143 IFVTRPDKKK-ILFFNDKSCQFTVDEEFQKLWRSITVDSMDEEKIEEYLKRQGISSMQES 201
Query: 238 QKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
++ A I + KP +K +R K N HL
Sbjct: 202 GPKKVAP----IQRRKKPVSQK---KRRFKTHNEHL 230
>gi|426256356|ref|XP_004021806.1| PREDICTED: general transcription factor IIE subunit 2-like [Ovis
aries]
Length = 289
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 13/188 (6%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 95 LTLEEILDETQHLDIGLKQKQWLMSEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 154
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
+ + G+ I L+D + +A+KA G L N ++ I + ND D++
Sbjct: 155 QHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 214
Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
+ L+R + + S D IE+ L++ G+ ++ ++ A I + KP +K +R
Sbjct: 215 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQDSGPKKVAP----IQRRKKPASQK---KRR 267
Query: 266 TKLTNAHL 273
K N HL
Sbjct: 268 FKTHNEHL 275
>gi|114051554|ref|NP_001039530.1| general transcription factor IIE subunit 2 [Bos taurus]
gi|118573899|sp|Q2KJF9.1|T2EB_BOVIN RecName: Full=General transcription factor IIE subunit 2; AltName:
Full=Transcription initiation factor IIE subunit beta;
Short=TFIIE-beta
gi|86821359|gb|AAI05363.1| General transcription factor IIE, polypeptide 2, beta 34kDa [Bos
taurus]
Length = 289
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 13/188 (6%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 95 LTLEEILDETQHLDIGLKQKQWLMSEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 154
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
+ + G+ I L+D + +A+KA G L N ++ I + ND D++
Sbjct: 155 QHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 214
Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
+ L+R + + S D IE+ L++ G+ ++ ++ A I + KP +K +R
Sbjct: 215 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQDSGPKKVAP----IQRRKKPASQK---KRR 267
Query: 266 TKLTNAHL 273
K N HL
Sbjct: 268 FKTHNEHL 275
>gi|296472383|tpg|DAA14498.1| TPA: general transcription factor IIE subunit 2 [Bos taurus]
gi|440895025|gb|ELR47323.1| General transcription factor IIE subunit 2 [Bos grunniens mutus]
Length = 289
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 13/188 (6%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 95 LTLEEILDETQHLDIGLKQKQWLMSEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 154
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
+ + G+ I L+D + +A+KA G L N ++ I + ND D++
Sbjct: 155 QHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 214
Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
+ L+R + + S D IE+ L++ G+ ++ ++ A I + KP +K +R
Sbjct: 215 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQDSGPKKVAP----IQRRKKPASQK---KRR 267
Query: 266 TKLTNAHL 273
K N HL
Sbjct: 268 FKTHNEHL 275
>gi|344281666|ref|XP_003412599.1| PREDICTED: general transcription factor IIE subunit 2-like
[Loxodonta africana]
Length = 291
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 97 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNLKDKKALLRLLD 156
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
K + G+ I L+D + +A+KA G L N ++ I + ND D++
Sbjct: 157 KHDQRGLGGILLEDIEEGLPNSHKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 216
Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
+ L+R + + S D IE+ L++ G+ + ++ A I + KP +K +R
Sbjct: 217 QKLWRSVTVDSMDDEKIEEYLKRQGISSMQESGPKKVAP----IQRRKKPASQK---KRR 269
Query: 266 TKLTNAHL 273
K N HL
Sbjct: 270 FKTHNEHL 277
>gi|402467891|gb|EJW03118.1| hypothetical protein EDEG_02504 [Edhazardia aedis USNM 41457]
Length = 209
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 90/178 (50%), Gaps = 18/178 (10%)
Query: 103 VDVNANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFP--EGIAVIDLKD 160
+++ N + L+ N K+ + YK +D+K K LL L++ G+ +L D
Sbjct: 42 INLYENPMILQLLKKNSKIIVECDTLQYKPTYDIKSKDDLLTLLKHVSGETGLEYNELID 101
Query: 161 SYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALP--SD 218
V+ + +L +G I++L +FD + I + ND + P +A ++ + I +P +D
Sbjct: 102 GPINVIPFINSLVESGDIFILKDFDGSQ-ILFHNDLKYP-RASAEVLTAYHQIKVPEYND 159
Query: 219 MLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPEL 276
ML+ +++ G+ ++KR+ Q +PK+ K ++ ++ K+TN HL +L
Sbjct: 160 MLE---EMKCAGLSTGHISKKRQIHVQ--------QPKQTK-KVKRKIKITNTHLKDL 205
>gi|378731197|gb|EHY57656.1| transcription initiation factor TFIIE beta subunit [Exophiala
dermatitidis NIH/UT8656]
Length = 232
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 15/169 (8%)
Query: 115 LRNNPKVHYDGKRFSYKSK--HDLKDKSQLLVLVRKFPE--GIAVIDLKDSYPTVMEDLQ 170
L NPKV+YD +YK K +++ LL ++ GI+V DLKD +P V E +
Sbjct: 63 LNVNPKVNYDAAADTYKFKPTYNIASADDLLKYLQNQGSALGISVRDLKDGWPDVEETID 122
Query: 171 ALKAAGQIWLLSN-FDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKN 229
L+A ++ ++ N D + + +DP + D + K ++ I LPS + D K+L++
Sbjct: 123 RLEAQHKLLVVRNKKDHHPRMVWLDDPTLVAPLDQEFKDIWLQIPLPS-VEDTIKELRRM 181
Query: 230 GMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
K +T R A +PK+KK ++ + K+TN H+ LF+
Sbjct: 182 NHK-STGEPARPDTA--------TRPKEKKKKVRRGQKITNIHMQGLFR 221
>gi|339522229|gb|AEJ84279.1| general transcription factor IIE subunit 2 [Capra hircus]
Length = 289
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 94/188 (50%), Gaps = 13/188 (6%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNP++ ++++K K++LKDK LL L+
Sbjct: 95 LTLEEILDETQHLDIGLKQKQWLMSEALVNNPQIEVGDGKYAFKPKYNLKDKKALLRLLD 154
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
+ + G+ I L+D + +A+KA G L N ++ I + ND D++
Sbjct: 155 QHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEF 214
Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
+ L+R + + S D IE+ L++ G+ ++ ++ A I + KP +K +R
Sbjct: 215 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQDSGPKKVAP----IQRRKKPASQK---KRR 267
Query: 266 TKLTNAHL 273
K N HL
Sbjct: 268 FKTHNEHL 275
>gi|359321502|ref|XP_003639611.1| PREDICTED: general transcription factor IIE subunit 2-like [Canis
lupus familiaris]
Length = 291
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 97 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNLKDKKALLRLLD 156
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDL 206
K + G+ I L+D + +A+KA G + N ++ I + ND D++
Sbjct: 157 KHDQRGLGGILLEDIEEGLPNSQKAVKALGDQIIFVNRPDKKKILFFNDKSCQFSVDEEF 216
Query: 207 KLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKR 265
+ L+R + + S D IE+ L++ G+ + ++ A I + KP +K +R
Sbjct: 217 QKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAP----IQRRKKPASQK---KRR 269
Query: 266 TKLTNAHL 273
K N HL
Sbjct: 270 FKTHNEHL 277
>gi|407920133|gb|EKG13351.1| hypothetical protein MPH_09633 [Macrophomina phaseolina MS6]
Length = 277
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 128 FSYKSKHDLKDKSQLLVLVRKFPE--GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFD 185
+ Y+ H+++ QL L++K GI V +LKD +P +E + L G+I + N
Sbjct: 124 YRYRPIHNVRSAEQLKGLLQKQASSVGIKVSELKDGWPGAVEAVNELDKKGEILVTRNQK 183
Query: 186 S-QEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT 235
+ Q + + NDP + DD+ + +F I LP + D+ L+ G+KP +
Sbjct: 184 TGQPMLVWQNDPSLAHTIDDEFRTMFLSIPLPPNPDDMRTRLEAAGLKPVS 234
>gi|212534252|ref|XP_002147282.1| transcription initiation factor TFIIE, beta subunit, putative
[Talaromyces marneffei ATCC 18224]
gi|210069681|gb|EEA23771.1| transcription initiation factor TFIIE, beta subunit, putative
[Talaromyces marneffei ATCC 18224]
Length = 290
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 20/169 (11%)
Query: 115 LRNNPKVHYD-----GK-RFSYKSKHDLKDKSQLL--VLVRKFPEGIAVIDLKDSYPTVM 166
L+ + KV+YD GK FS++ H+++ + QLL + + GI V DLK+ + V
Sbjct: 120 LQVHDKVNYDPSGADGKGTFSFRPPHNIRSEEQLLQKLQSQTTMTGILVKDLKEGWSGVE 179
Query: 167 EDLQALKAAGQIWLLSNF-DSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKD 225
+ + L+ G++ + N D+ + + NDP + K DD+ ++++ +P D + +D
Sbjct: 180 QTIDKLEQEGKLLVTRNKKDNHPKMVWANDPSLMHKFDDEFRVIWEKTKVP-DQQQVIED 238
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRT-KLTNAHL 273
L+K GM P TN K + + K ++KK + +RT K TN H+
Sbjct: 239 LEKAGMIP-TNKNKV--------VKPRPKVEQKKTKKPRRTGKTTNTHM 278
>gi|291000102|ref|XP_002682618.1| transcription initiation factor IIE beta subunit [Naegleria
gruberi]
gi|284096246|gb|EFC49874.1| transcription initiation factor IIE beta subunit [Naegleria
gruberi]
Length = 376
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 31/202 (15%)
Query: 101 CYVDVNANKAVFDSLRNNPKVHYDG---------KRFSYKSKH-DLKDKSQLLVLVRKFP 150
++D KA++ L N KV Y G F +K+ H +K+K +L L++ P
Sbjct: 176 AHLDDRIKKAIYLKLMQNHKVDYQGPTTKNIDENATFCFKAIHQSIKEKKHVLELLQN-P 234
Query: 151 E----GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRV--PIKADD 204
E GI V +L +SY V+ D++ LK + + N D + DI Y ND V PI D
Sbjct: 235 EFVISGIPVSELAESYKGVLNDIEELKKEKAVISIPNQDKKCDILYFNDVSVDMPI-VDV 293
Query: 205 DLKLLFRDI---ALPSDMLDIEKDLQKNGMKPATNT------QKRRAAAQIQGISSKNKP 255
L+ L+R +P+ D+ LQK G+ PA T + R+ + ++KN
Sbjct: 294 KLRDLWRGTRERRIPAS--DLPSLLQKVGL-PAIQTVEWPEDEHRKKKEAEREENAKNTK 350
Query: 256 KKKKHEISKRTKLTNAHLPELF 277
K+ +++ + K+TN HL E F
Sbjct: 351 TKRTRKMNVK-KMTNKHLAEEF 371
>gi|290971094|ref|XP_002668371.1| predicted protein [Naegleria gruberi]
gi|284081743|gb|EFC35627.1| predicted protein [Naegleria gruberi]
Length = 319
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 31/202 (15%)
Query: 101 CYVDVNANKAVFDSLRNNPKVHYDG---------KRFSYKSKH-DLKDKSQLLVLVRKFP 150
++D KA++ L N KV Y G F +K+ H +K+K +L L++ P
Sbjct: 119 AHLDDRIKKAIYLKLMQNHKVDYQGPTTKNIDENATFCFKAIHQSIKEKKHVLELLQN-P 177
Query: 151 E----GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRV--PIKADD 204
E GI V +L +SY V+ D++ LK + + N D + DI Y ND V PI D
Sbjct: 178 EFVISGIPVSELAESYKGVLNDIEELKKEKAVISIPNQDKKCDILYFNDVSVDMPI-VDV 236
Query: 205 DLKLLFRDI---ALPSDMLDIEKDLQKNGMKPATNT------QKRRAAAQIQGISSKNKP 255
L+ L+R +P+ D+ LQK G+ PA T + R+ + ++KN
Sbjct: 237 KLRDLWRGTRERRIPAS--DLPSLLQKVGL-PAIQTVEWPEDEHRKKKEAEREENAKNTK 293
Query: 256 KKKKHEISKRTKLTNAHLPELF 277
K+ +++ + K+TN HL E F
Sbjct: 294 TKRTRKMNVK-KMTNKHLAEEF 314
>gi|354474939|ref|XP_003499687.1| PREDICTED: general transcription factor IIE subunit 2-like
[Cricetulus griseus]
gi|344242333|gb|EGV98436.1| General transcription factor IIE subunit 2 [Cricetulus griseus]
Length = 291
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 9/163 (5%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ ++++K K++LKDK LL L+ + G+ I L+D + +A
Sbjct: 122 EALVNNPKIEVIDGKYAFKPKYNLKDKKALLRLLDNHDQRGLGGILLEDIEEGLPNSQKA 181
Query: 172 LKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNG 230
+KA G L N ++ I + ND D++ + L+R + + S D IE L++ G
Sbjct: 182 VKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEDYLKRQG 241
Query: 231 MKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ + ++ A+ I + KP +K +R K N HL
Sbjct: 242 ISSMQESGPKKVAS----IQRRKKPASQK---KRRFKTHNEHL 277
>gi|410081297|ref|XP_003958228.1| hypothetical protein KAFR_0G00600 [Kazachstania africana CBS 2517]
gi|372464816|emb|CCF59093.1| hypothetical protein KAFR_0G00600 [Kazachstania africana CBS 2517]
Length = 325
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 16/183 (8%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
Y+ + N V + L+ K+ +D K+ F Y S +D+ S+LL L+R F +GI+
Sbjct: 147 YLSLKPNDKVLELLKKLEKIQFDAKKNTFKYISTYDVHSASELLALLRSQVTF-KGISCK 205
Query: 157 DLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIAL 215
+LKD +P E + L+ +I +L + D + N+ + D++ + +I L
Sbjct: 206 ELKDGWPQCDETINQLEEENKILVLRTKKDKTPRFVWYNNGGDLDRIDEEFVKTWENIQL 265
Query: 216 PSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPE 275
P ++ + LQ G+KPA+ A I+ ++K + KKK+ ++ K+TN H+
Sbjct: 266 PQ-FAELPRKLQDLGLKPAS-----VDPATIKRQTAKVEVKKKRQ---RKGKITNTHMAG 316
Query: 276 LFQ 278
+ +
Sbjct: 317 ILK 319
>gi|291240303|ref|XP_002740059.1| PREDICTED: general transcription factor IIE, polypeptide 2, beta
34kDa-like isoform 1 [Saccoglossus kowalevskii]
Length = 285
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 111 VFDSLRNNPKVHY-DGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTV 165
+ ++L NNPK+ + ++S+K K++L+ + LL L+ + + GI + D+++S P
Sbjct: 116 ITEALCNNPKIQVSESNKYSFKPKYNLRGRKDLLRLLDRHDQKGLGGILLEDIQESLPMA 175
Query: 166 MEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEK 224
+ ++ L+ QI ++ ++ I + ND D+D + L+R IA+ S D IE+
Sbjct: 176 EKAVKVLERMNQIIIVVRPVDKKKILFYNDKSCQFTVDEDFQKLWRSIAVDSLDEGKIEE 235
Query: 225 DLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKH 260
L+K G+ + ++ Q + S+ K KKH
Sbjct: 236 YLKKQGITSMQDIGGKKIQVQKRRKPSRKGMKFKKH 271
>gi|351701273|gb|EHB04192.1| General transcription factor IIE subunit 2 [Heterocephalus glaber]
Length = 292
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 15/189 (7%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K+DLKDK LL L+
Sbjct: 98 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYDLKDKRALLRLLD 157
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDD 205
+ + G+ I L+D + +A+KA G QI +S D ++ I + ND D++
Sbjct: 158 QHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKK-ILFFNDKSCQFSVDEE 216
Query: 206 LKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISK 264
+ L+R + + S D IE+ L++ G+ + ++ A I + KP +K +
Sbjct: 217 FQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAP----IQRRKKPASQK---KR 269
Query: 265 RTKLTNAHL 273
R K N H+
Sbjct: 270 RFKTHNEHM 278
>gi|148703474|gb|EDL35421.1| general transcription factor II E, polypeptide 2 (beta subunit),
isoform CRA_b [Mus musculus]
Length = 207
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 15/189 (7%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 13 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 72
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDD 205
+ G+ I L+D + +A+KA G QI +S D ++ I + ND D++
Sbjct: 73 NHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKK-ILFFNDKSCQFSVDEE 131
Query: 206 LKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISK 264
+ L+R + + S D IE+ L++ G+ + ++ A+ I + KP +K +
Sbjct: 132 FQKLWRSVTVESMDEEKIEEYLKRQGISSMQESGPKKVAS----IQRRKKPASQK---KR 184
Query: 265 RTKLTNAHL 273
R K N HL
Sbjct: 185 RFKTHNEHL 193
>gi|126330761|ref|XP_001372577.1| PREDICTED: general transcription factor IIE subunit 2-like
[Monodelphis domestica]
Length = 291
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 19/191 (9%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 96 LTLEEILDETQHLDIGLKQKQWLMSEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 155
Query: 148 KFPE----GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKAD 203
K + GI + D+++ P + ++AL QI ++ D ++ I + ND D
Sbjct: 156 KHDQRGLGGILLEDIEEGLPNAQKAIKAL--GDQIIFVTRPDKKK-ILFFNDKSCQFTVD 212
Query: 204 DDLKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEI 262
++ + L+R I + S D IE+ L++ G+ + ++ A I + KP +K
Sbjct: 213 EEFQKLWRSITVDSMDEEKIEEYLKRQGISSMQESGPKKVAP----IQRRKKPVSQK--- 265
Query: 263 SKRTKLTNAHL 273
+R K N HL
Sbjct: 266 KRRFKTHNEHL 276
>gi|26353328|dbj|BAC40294.1| unnamed protein product [Mus musculus]
gi|148703471|gb|EDL35418.1| general transcription factor II E, polypeptide 2 (beta subunit),
isoform CRA_a [Mus musculus]
gi|148703472|gb|EDL35419.1| general transcription factor II E, polypeptide 2 (beta subunit),
isoform CRA_a [Mus musculus]
gi|148703473|gb|EDL35420.1| general transcription factor II E, polypeptide 2 (beta subunit),
isoform CRA_a [Mus musculus]
gi|148703475|gb|EDL35422.1| general transcription factor II E, polypeptide 2 (beta subunit),
isoform CRA_a [Mus musculus]
Length = 292
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 15/189 (7%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 98 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 157
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDD 205
+ G+ I L+D + +A+KA G QI +S D ++ I + ND D++
Sbjct: 158 NHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKK-ILFFNDKSCQFSVDEE 216
Query: 206 LKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISK 264
+ L+R + + S D IE+ L++ G+ + ++ A+ I + KP +K +
Sbjct: 217 FQKLWRSVTVESMDEEKIEEYLKRQGISSMQESGPKKVAS----IQRRKKPASQK---KR 269
Query: 265 RTKLTNAHL 273
R K N HL
Sbjct: 270 RFKTHNEHL 278
>gi|345568459|gb|EGX51353.1| hypothetical protein AOL_s00054g423 [Arthrobotrys oligospora ATCC
24927]
Length = 286
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 104/214 (48%), Gaps = 17/214 (7%)
Query: 74 VGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD--GKRFSYK 131
+ Q+ +++ L E + T ++ R ++ + + + LR++ K+ +D +++K
Sbjct: 84 IMTQVLHLVEHLKEVEKPLTRADLER--FLAKPLDSTMIEILRSHDKLVFDHVTDTYAFK 141
Query: 132 SKHDLKDKSQLLVLVR--KFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQE 188
H+++ QLL ++ +G++V +LKD + + + L+A G I + + D Q
Sbjct: 142 PLHNIRSAQQLLTHLQASTTAQGLSVKELKDGWSGALATIDELEADGSILVTRTKKDGQA 201
Query: 189 DIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKP-ATNTQKRRAAAQIQ 247
+ + ND + + DD+ K ++ I +P ++ +L++ G+KP + + + A Q
Sbjct: 202 RMVWINDKSLNVTIDDEFKTIWEKIVIPPAA-ELPGELERAGLKPTSVDPATIKKAMQKD 260
Query: 248 GISSKNKPKKKKHEISKRTKLTNAHLPELFQKLN 281
+ KP +R ++TN HL + + N
Sbjct: 261 QGKKQKKP--------RRGRITNTHLAGMLRDYN 286
>gi|444317755|ref|XP_004179535.1| hypothetical protein TBLA_0C02040 [Tetrapisispora blattae CBS 6284]
gi|387512576|emb|CCH60016.1| hypothetical protein TBLA_0C02040 [Tetrapisispora blattae CBS 6284]
Length = 349
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
Y+ + + + D L+ K+H+D K+ F Y S +D+ +LL L+RK F +GI+
Sbjct: 171 YISIKKDDKIIDLLKKLEKIHFDPKKNSFKYISTYDVHSPQELLNLLRKQVTF-KGISCK 229
Query: 157 DLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIAL 215
+LKD +P E + +L+ +I +L + D + N+ + D+D ++ ++ L
Sbjct: 230 ELKDGWPQCDETINSLEEDSKILVLRTKKDKTPRYVWYNNGGDLHRIDEDFINMWENVQL 289
Query: 216 PSDMLDIEKDLQKNGMKPAT 235
P ++ + LQ+ G+KPA+
Sbjct: 290 PQ-FAELPRKLQELGLKPAS 308
>gi|417398448|gb|JAA46257.1| Putative proteinral transcription factor iie subunit [Desmodus
rotundus]
Length = 291
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 15/189 (7%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 97 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNLKDKKALLRLLD 156
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDD 205
K + G+ I L+D + +A+KA G QI +S D ++ I + ND D++
Sbjct: 157 KHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKK-ILFFNDKSCQFSVDEE 215
Query: 206 LKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISK 264
+ L+R + + S D IE+ L++ G+ + ++ A I + KP +K +
Sbjct: 216 FQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAP----IQRRKKPASQK---KR 268
Query: 265 RTKLTNAHL 273
R K N H+
Sbjct: 269 RFKTHNEHM 277
>gi|254581084|ref|XP_002496527.1| ZYRO0D02200p [Zygosaccharomyces rouxii]
gi|238939419|emb|CAR27594.1| ZYRO0D02200p [Zygosaccharomyces rouxii]
Length = 310
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 93/184 (50%), Gaps = 18/184 (9%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
Y+ + + + + L+ K+ YD K+ F Y S +D+ +LL L+R F +GI+
Sbjct: 132 YLSIRKDDKILELLKKLDKIGYDPKKATFKYISTYDVHSAQELLNLLRSQVTF-KGISCK 190
Query: 157 DLKDSYPTVMEDLQALKAAGQIWLLSNFDSQED--IAYPNDPRVPIKADDDLKLLFRDIA 214
+LKD +P E + L+ +I +L + + Y N P + + +D L++ ++
Sbjct: 191 ELKDGWPQCDETINELEEDSKILVLRTKKDRTPRYVWYNNGPELD-RIGEDFVLMWENVQ 249
Query: 215 LPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLP 274
LP ++ + LQ G+KPA+ A ++ +++ + KKK+ +R K+TN H+
Sbjct: 250 LPQ-FAELPRKLQDLGLKPAS-----VDPATVKRQTTRVEVKKKRQ---RRGKITNTHMA 300
Query: 275 ELFQ 278
+ +
Sbjct: 301 GVLK 304
>gi|255947014|ref|XP_002564274.1| Pc22g02300 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591291|emb|CAP97518.1| Pc22g02300 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 295
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 128 FSYKSKHDLKDKSQLL--VLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNF- 184
F ++ H++++ QLL + + G++V +L++ +P V E++ ++ G++ + N
Sbjct: 142 FRFRPPHNIRNSEQLLKYLQAQTTAAGMSVRELREGWPNVEEEINRMEKEGKLLVTRNKK 201
Query: 185 DSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAA 244
D + +PNDP + DD+ K ++ I +P D+ ++++L K G+ P TN K
Sbjct: 202 DDHPKMVWPNDPSLIEHFDDEFKQIWDKIKVP-DVKVVKEELDKFGITP-TNKNKVLGPR 259
Query: 245 QIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
I P KK + + K TN H+ + +
Sbjct: 260 VIA-------PSKKAKKPRRSGKTTNTHMTSILR 286
>gi|118089935|ref|XP_001233400.1| PREDICTED: general transcription factor IIE subunit 2 isoform 1
[Gallus gallus]
gi|363733352|ref|XP_003641238.1| PREDICTED: general transcription factor IIE subunit 2 isoform 2
[Gallus gallus]
gi|53136302|emb|CAG32502.1| hypothetical protein RCJMB04_27j8 [Gallus gallus]
Length = 290
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 20/168 (11%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMED 168
++L NNPK+ +F++K K++LKDK LL L+ K + GI + ++++ P +
Sbjct: 121 EALVNNPKIEVVDGKFAFKPKYNLKDKKALLRLLDKHDQQGLGGIFLEEIEEGLPNAHKA 180
Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IEKD 225
++AL QI ++ D ++ + Y ND D++ + L+R I P D +D +E+
Sbjct: 181 IKAL--GDQILFVTRPDKRQ-LLYYNDKSCHFSVDEEFRKLWRSI--PMDSIDEDKVEEY 235
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
L++ G+ R+ A + + KP +K +R K N HL
Sbjct: 236 LKRQGISSMREAGPRKIAP-----AQRKKPTSQK---KRRFKTHNDHL 275
>gi|164518917|ref|NP_001100788.2| general transcription factor II E, polypeptide 2 (beta subunit)
[Rattus norvegicus]
Length = 291
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 15/189 (7%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 97 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 156
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDD 205
+ G+ I L+D + +A+KA G QI +S D ++ I + ND D++
Sbjct: 157 NHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKK-ILFFNDKSCQFSVDEE 215
Query: 206 LKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISK 264
+ L+R + + S D IE+ L++ G+ + ++ A+ I + KP +K +
Sbjct: 216 FQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAS----IQRRKKPASQK---KR 268
Query: 265 RTKLTNAHL 273
R K N HL
Sbjct: 269 RFKTHNEHL 277
>gi|268838606|ref|NP_080860.3| general transcription factor IIE subunit 2 [Mus musculus]
gi|268838637|ref|NP_001161393.1| general transcription factor IIE subunit 2 [Mus musculus]
gi|268838784|ref|NP_001161394.1| general transcription factor IIE subunit 2 [Mus musculus]
gi|62901050|sp|Q9D902.2|T2EB_MOUSE RecName: Full=General transcription factor IIE subunit 2; AltName:
Full=Transcription initiation factor IIE subunit beta;
Short=TFIIE-beta
gi|18043581|gb|AAH20016.1| General transcription factor II E, polypeptide 2 (beta subunit)
[Mus musculus]
gi|74142361|dbj|BAE31938.1| unnamed protein product [Mus musculus]
gi|74182609|dbj|BAE34662.1| unnamed protein product [Mus musculus]
gi|74219536|dbj|BAE29539.1| unnamed protein product [Mus musculus]
Length = 292
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 15/189 (7%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 98 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 157
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDD 205
+ G+ I L+D + +A+KA G QI +S D ++ I + ND D++
Sbjct: 158 NHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKK-ILFFNDKSCQFSVDEE 216
Query: 206 LKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISK 264
+ L+R + + S D IE+ L++ G+ + ++ A+ I + KP +K +
Sbjct: 217 FQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAS----IQRRKKPASQK---KR 269
Query: 265 RTKLTNAHL 273
R K N HL
Sbjct: 270 RFKTHNEHL 278
>gi|154277814|ref|XP_001539740.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150413325|gb|EDN08708.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 298
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 127/269 (47%), Gaps = 30/269 (11%)
Query: 22 SNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDTERLQHINSIRKSPVGAQIKRV 81
N+AA +S AT+T+ ++ST A ++ + DT Q N+ + Q+
Sbjct: 31 GNLAAAGSSSVATSTTAQAVRSSSTNAVANGR-RHDADTVYSQPANTGTGKDIMTQVVFA 89
Query: 82 IDRLLETRQAFTPEEINRDCYV-----DVNANKAVFDSLRNNPKVHYD-----GK-RFSY 130
ID + A +I + D +A+ L+++ KV YD G+ F +
Sbjct: 90 IDHMKSKDYALKFADILSYLSLQQQGHDPGYIQALKRILQSHDKVEYDPSGANGEGTFRF 149
Query: 131 KSKHDLKDKSQLLVLVRKFP--EGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNF-DSQ 187
K H+++ QLL ++ P +G++V +L++ +P +++ + L+ G++ + N D+Q
Sbjct: 150 KPPHNIRSAEQLLRKLQSQPTAQGMSVRELREGWPNIVQAIDKLEEEGKLLVTRNKKDNQ 209
Query: 188 EDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQ 247
+ + NDP + D + + ++ I +P D + +L+K G+ T+T K +
Sbjct: 210 PKMVWANDPSLIQHFDPEFRQIWEKIKIP-DQQTVTDELEKAGI---TSTSKNKV----- 260
Query: 248 GISSKNKPK---KKKHEISKRTKLTNAHL 273
+K KPK KK + + K TN H+
Sbjct: 261 ---TKPKPKVEHKKVKKARRSGKTTNTHM 286
>gi|12841072|dbj|BAB25066.1| unnamed protein product [Mus musculus]
Length = 292
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 98/194 (50%), Gaps = 15/194 (7%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 98 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 157
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDD 205
+ G+ I L+D + +A+KA G QI +S D ++ I + ND D++
Sbjct: 158 NHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKK-ILFFNDKSCQFSVDEE 216
Query: 206 LKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISK 264
+ L+R + + S D IE+ L++ G+ + ++ A+ I + KP +K +
Sbjct: 217 FQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAS----IQRRKKPASQK---KR 269
Query: 265 RTKLTNAHLPELFQ 278
R K N HL + +
Sbjct: 270 RFKTHNEHLAGVLK 283
>gi|225560922|gb|EEH09203.1| transcription initiation factor IIE subunit beta [Ajellomyces
capsulatus G186AR]
Length = 298
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 127/269 (47%), Gaps = 30/269 (11%)
Query: 22 SNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDTERLQHINSIRKSPVGAQIKRV 81
N+AA +S AT+T+ ++ST A ++ + DT Q N+ + Q+
Sbjct: 31 GNLAAAGSSSVATSTTAQAVRSSSTNAVANGR-RHDADTVYSQPANTGTGKDIMTQVVFA 89
Query: 82 IDRLLETRQAFTPEEINRDCYVDVNAN-----KAVFDSLRNNPKVHYD-----GK-RFSY 130
ID + A +I + + +A+ L+++ KV YD G+ F +
Sbjct: 90 IDHMKSKDYALKFADILSYLSLQQQGHDPGYIQALKRILQSHDKVEYDPSGANGEGTFRF 149
Query: 131 KSKHDLKDKSQLLVLVRKFP--EGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNF-DSQ 187
K H+++ QLL ++ P +G++V +L++ +P +++ + L+ G++ + N D+Q
Sbjct: 150 KPPHNIRSAEQLLRKLQSQPTAQGMSVRELREGWPNIVQAIDKLEEEGKLLVTRNKKDNQ 209
Query: 188 EDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQ 247
+ + NDP + D + + ++ I +P D + +L+K G+ T+T K +
Sbjct: 210 PKMVWANDPSLIQHFDPEFRQIWEKIKIP-DQQTVTDELEKAGI---TSTSKNKV----- 260
Query: 248 GISSKNKPK---KKKHEISKRTKLTNAHL 273
+K KPK KK + + K TN H+
Sbjct: 261 ---TKPKPKVEHKKVKKARRSGKTTNTHM 286
>gi|326918482|ref|XP_003205517.1| PREDICTED: general transcription factor IIE subunit 2-like
[Meleagris gallopavo]
Length = 290
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 20/168 (11%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMED 168
++L NNPK+ +F++K K++LKDK LL L+ K + GI + ++++ P +
Sbjct: 121 EALVNNPKIEVIDGKFAFKPKYNLKDKKALLRLLDKHDQQGLGGIFLEEIEEGLPNAHKA 180
Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IEKD 225
++AL QI ++ D ++ + Y ND D++ + L+R I P D +D +E+
Sbjct: 181 IKAL--GDQILFVTRPDKRQ-LLYYNDKSCHFSVDEEFRKLWRSI--PMDSIDEDKVEEY 235
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
L++ G+ R+ A + + KP +K +R K N HL
Sbjct: 236 LKRQGISSMREAGPRKIAP-----AQRKKPTSQK---KRRFKTHNDHL 275
>gi|242789623|ref|XP_002481401.1| transcription initiation factor TFIIE, beta subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218717989|gb|EED17409.1| transcription initiation factor TFIIE, beta subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 283
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 20/164 (12%)
Query: 120 KVHYD-----GK-RFSYKSKHDLKDKSQLL--VLVRKFPEGIAVIDLKDSYPTVMEDLQA 171
KV+YD GK FS++ H+++ + QLL + + GI V DLK+ +P V + +
Sbjct: 118 KVNYDPTGADGKGTFSFRPPHNIRSEEQLLQKLQSQTTMTGILVKDLKEGWPGVEQIIDK 177
Query: 172 LKAAGQIWLLSNF-DSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNG 230
L+ G++ + N D+ + + NDP + K DD+ + ++ +P IE +L+K G
Sbjct: 178 LERDGKLLVTRNKKDNHPKMVWANDPSLMHKFDDEFRQIWEKTKIPDHQQVIE-ELEKAG 236
Query: 231 MKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRT-KLTNAHL 273
M P TN K + + K ++KK + +RT K TN H+
Sbjct: 237 MIP-TNKNKV--------VKPRPKVEQKKTKKPRRTGKTTNTHM 271
>gi|240280522|gb|EER44026.1| transcription initiation factor IIE subunit beta [Ajellomyces
capsulatus H143]
gi|325096409|gb|EGC49719.1| transcription initiation factor IIE subunit beta [Ajellomyces
capsulatus H88]
Length = 298
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 127/269 (47%), Gaps = 30/269 (11%)
Query: 22 SNIAAKSGASRATTTSRPTPAAASTAARSSPPVKFSNDTERLQHINSIRKSPVGAQIKRV 81
N+AA +S AT+T+ ++ST A ++ + DT Q N+ + Q+
Sbjct: 31 GNLAAAGSSSVATSTNAQAVRSSSTNAVANGR-RHDADTVYSQPANTGTGKDIMTQVVFA 89
Query: 82 IDRLLETRQAFTPEEINRDCYVDVNAN-----KAVFDSLRNNPKVHYD-----GK-RFSY 130
ID + A +I + + +A+ L+++ KV YD G+ F +
Sbjct: 90 IDHMKSKDYALKFADILSYLSLQQQGHDPGYIQALKRILQSHDKVEYDPSGANGEGTFRF 149
Query: 131 KSKHDLKDKSQLLVLVRKFP--EGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNF-DSQ 187
K H+++ QLL ++ P +G++V +L++ +P +++ + L+ G++ + N D+Q
Sbjct: 150 KPPHNIRSAEQLLRKLQSQPTAQGMSVRELREGWPNIVQAIDKLEEEGKLLVTRNKKDNQ 209
Query: 188 EDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQ 247
+ + NDP + D + + ++ I +P D + +L+K G+ T+T K +
Sbjct: 210 PKMVWANDPSLIQHFDPEFRQIWEKIKIP-DQQTVTDELEKAGI---TSTSKNKV----- 260
Query: 248 GISSKNKPK---KKKHEISKRTKLTNAHL 273
+K KPK KK + + K TN H+
Sbjct: 261 ---TKPKPKVEHKKVKKARRSGKTTNTHM 286
>gi|296221930|ref|XP_002756965.1| PREDICTED: transcription initiation factor IIE subunit beta isoform
1 [Callithrix jacchus]
gi|296221932|ref|XP_002756966.1| PREDICTED: transcription initiation factor IIE subunit beta isoform
2 [Callithrix jacchus]
Length = 291
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ ++++K K++++DK LL L+ + + G+ I L+D + +A
Sbjct: 122 EALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKA 181
Query: 172 LKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNG 230
+KA G L N ++ I + ND D++ + L+R + + S D IE+ L++ G
Sbjct: 182 VKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQG 241
Query: 231 MKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ + ++ A I + KP +K +R K N HL
Sbjct: 242 ISSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHL 277
>gi|403294312|ref|XP_003938138.1| PREDICTED: transcription initiation factor IIE subunit beta
[Saimiri boliviensis boliviensis]
Length = 291
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ ++++K K++++DK LL L+ + + G+ I L+D + +A
Sbjct: 122 EALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKA 181
Query: 172 LKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNG 230
+KA G L N ++ I + ND D++ + L+R + + S D IE+ L++ G
Sbjct: 182 VKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQG 241
Query: 231 MKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ + ++ A I + KP +K +R K N HL
Sbjct: 242 ISSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHL 277
>gi|332240826|ref|XP_003269588.1| PREDICTED: transcription initiation factor IIE subunit beta isoform
1 [Nomascus leucogenys]
gi|441621183|ref|XP_004088734.1| PREDICTED: transcription initiation factor IIE subunit beta isoform
2 [Nomascus leucogenys]
Length = 291
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ ++++K K++++DK LL L+ + + G+ I L+D + +A
Sbjct: 122 EALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKA 181
Query: 172 LKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNG 230
+KA G L N ++ I + ND D++ + L+R + + S D IE+ L++ G
Sbjct: 182 VKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQG 241
Query: 231 MKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ + ++ A I + KP +K +R K N HL
Sbjct: 242 ISSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHL 277
>gi|4504195|ref|NP_002086.1| transcription initiation factor IIE subunit beta [Homo sapiens]
gi|114619590|ref|XP_001168104.1| PREDICTED: transcription initiation factor IIE subunit beta isoform
1 [Pan troglodytes]
gi|397521466|ref|XP_003830816.1| PREDICTED: transcription initiation factor IIE subunit beta [Pan
paniscus]
gi|135232|sp|P29084.1|T2EB_HUMAN RecName: Full=Transcription initiation factor IIE subunit beta;
Short=TFIIE-beta; AltName: Full=General transcription
factor IIE subunit 2
gi|37070|emb|CAA45069.1| transcription factor TFIIE beta [Homo sapiens]
gi|239580|gb|AAB20414.1| general transcription factor IIE 34 kda subunit [Homo sapiens]
gi|21040507|gb|AAH30572.1| General transcription factor IIE, polypeptide 2, beta 34kDa [Homo
sapiens]
gi|119583850|gb|EAW63446.1| general transcription factor IIE, polypeptide 2, beta 34kDa,
isoform CRA_a [Homo sapiens]
gi|119583853|gb|EAW63449.1| general transcription factor IIE, polypeptide 2, beta 34kDa,
isoform CRA_a [Homo sapiens]
gi|208966362|dbj|BAG73195.1| general transcription factor IIE, polypeptide 2, beta 34kDa
[synthetic construct]
gi|410207486|gb|JAA00962.1| general transcription factor IIE, polypeptide 2, beta 34kDa [Pan
troglodytes]
gi|410263916|gb|JAA19924.1| general transcription factor IIE, polypeptide 2, beta 34kDa [Pan
troglodytes]
gi|410296794|gb|JAA26997.1| general transcription factor IIE, polypeptide 2, beta 34kDa [Pan
troglodytes]
gi|410331247|gb|JAA34570.1| general transcription factor IIE, polypeptide 2, beta 34kDa [Pan
troglodytes]
Length = 291
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ ++++K K++++DK LL L+ + + G+ I L+D + +A
Sbjct: 122 EALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKA 181
Query: 172 LKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNG 230
+KA G L N ++ I + ND D++ + L+R + + S D IE+ L++ G
Sbjct: 182 VKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQG 241
Query: 231 MKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ + ++ A I + KP +K +R K N HL
Sbjct: 242 ISSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHL 277
>gi|426359272|ref|XP_004046904.1| PREDICTED: transcription initiation factor IIE subunit beta
[Gorilla gorilla gorilla]
Length = 257
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 9/169 (5%)
Query: 107 ANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTV 165
N +L NNPK+ ++++K K++++DK LL L+ + + G+ I L+D +
Sbjct: 82 VNYMKLQALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEAL 141
Query: 166 MEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEK 224
+A+KA G L N ++ I + ND D++ + L+R + + S D IE+
Sbjct: 142 PNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEE 201
Query: 225 DLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
L++ G+ + ++ A I + KP +K +R K N HL
Sbjct: 202 YLKRQGISSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHL 243
>gi|154298525|ref|XP_001549685.1| hypothetical protein BC1G_11447 [Botryotinia fuckeliana B05.10]
gi|347440641|emb|CCD33562.1| similar to transcription initiation factor IIE subunit beta
[Botryotinia fuckeliana]
Length = 297
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 132/294 (44%), Gaps = 35/294 (11%)
Query: 10 FKKQQEKCQETLSNIAAKSGASRATT-TSRPTPAAASTAARSSPPVKFSNDTERLQHINS 68
+KQQ + + N ++K + R T S P+PA ++T+ S K + + + N
Sbjct: 5 LEKQQAAFAKGIQNTSSKITSKRPTAPVSVPSPAPSNTSNTSKSENK--DPKRKREPTNV 62
Query: 69 IRKSPVGA--------QIKRVIDRLLETRQAFTPEEINR---DCYVDVNANKAVFDSLRN 117
+ P Q+ VI+ L + + T +EI +V+ + + + LR
Sbjct: 63 VYSQPASTGYGTEAFTQVTYVIEFLKKKDEPKTFQEILEYLSQVHVEQSKKQLIAQILRR 122
Query: 118 NPKVHY-----------DGKRFSYKSKHDLKDKSQLLVLVRKFP--EGIAVIDLKDSYPT 164
+ +V + D F ++ +++K LL ++ P +G++V DLKD +P
Sbjct: 123 HDRVQWIADPKLKVQAWDSGTFKHRPIIGVRNKGALLSYLQNKPDAQGVSVKDLKDGWPD 182
Query: 165 VMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIE 223
+ + L+ +I + + D+ + + NDP + + + ++++ LPS + D+
Sbjct: 183 CEDAINELEKEYKILVTRTKKDNHARMIWINDPTLIHPVESEFQVMWHRTELPS-VDDLV 241
Query: 224 KDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELF 277
+ L +NG KPA+ +R ++ K K KK+K K + TN H+ L
Sbjct: 242 RKLLENGQKPASEDPSKRVK-----VAPKAKEKKRKAP-RKGGRTTNTHMAHLL 289
>gi|54696420|gb|AAV38582.1| general transcription factor IIE, polypeptide 2, beta 34kDa
[synthetic construct]
gi|60810069|gb|AAX36090.1| general transcription factor IIE polypeptide 2 [synthetic
construct]
gi|61366471|gb|AAX42864.1| general transcription factor IIE polypeptide 2 beta [synthetic
construct]
Length = 292
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ ++++K K++++DK LL L+ + + G+ I L+D + +A
Sbjct: 122 EALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKA 181
Query: 172 LKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNG 230
+KA G L N ++ I + ND D++ + L+R + + S D IE+ L++ G
Sbjct: 182 VKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQG 241
Query: 231 MKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ + ++ A I + KP +K +R K N HL
Sbjct: 242 ISSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHL 277
>gi|383412193|gb|AFH29310.1| transcription initiation factor IIE subunit beta [Macaca mulatta]
Length = 291
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 11/164 (6%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ ++++K K++++DK LL L+ + + G+ I L+D + +A
Sbjct: 122 EALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKA 181
Query: 172 LKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKN 229
+KA G QI +S D ++ I + ND D++ + L+R + + S D IE+ L++
Sbjct: 182 VKALGDQILFVSRPDKKK-ILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ 240
Query: 230 GMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
G+ + +R A I + KP +K +R K N HL
Sbjct: 241 GISSMQESGPKRVAP----IQRRKKPASQK---KRRFKTHNEHL 277
>gi|386781278|ref|NP_001247856.1| general transcription factor IIE, polypeptide 2, beta 34kDa [Macaca
mulatta]
gi|355697846|gb|EHH28394.1| Transcription initiation factor IIE subunit beta [Macaca mulatta]
gi|355779617|gb|EHH64093.1| Transcription initiation factor IIE subunit beta [Macaca
fascicularis]
gi|380812118|gb|AFE77934.1| transcription initiation factor IIE subunit beta [Macaca mulatta]
gi|384940422|gb|AFI33816.1| transcription initiation factor IIE subunit beta [Macaca mulatta]
Length = 291
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 11/164 (6%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ ++++K K++++DK LL L+ + + G+ I L+D + +A
Sbjct: 122 EALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKA 181
Query: 172 LKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKN 229
+KA G QI +S D ++ I + ND D++ + L+R + + S D IE+ L++
Sbjct: 182 VKALGDQILFVSRPDKKK-ILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ 240
Query: 230 GMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
G+ + +R A I + KP +K +R K N HL
Sbjct: 241 GISSMQESGPKRVAP----IQRRKKPASQK---KRRFKTHNEHL 277
>gi|254571713|ref|XP_002492966.1| TFIIE small subunit, involved in RNA polymerase II transcription
initiation [Komagataella pastoris GS115]
gi|238032764|emb|CAY70787.1| TFIIE small subunit, involved in RNA polymerase II transcription
initiation [Komagataella pastoris GS115]
gi|328353021|emb|CCA39419.1| Transcription initiation factor IIE subunit beta [Komagataella
pastoris CBS 7435]
Length = 281
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 113/236 (47%), Gaps = 28/236 (11%)
Query: 61 ERLQH-----INSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSL 115
E LQH + +I S + Q+ ++ + + + + E+ R +D++ K + L
Sbjct: 58 EELQHESTRSLANISGSHLSTQLHLAVEYIKKQDKEVSINELQRHMSMDIS--KTLLPLL 115
Query: 116 RNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVR---KFPEGIAVIDLKDSYPTVMEDLQ 170
+N ++ YD R Y S H+++ LL +R F +GI V +LKD + + +
Sbjct: 116 KNIDRIRYDPDRHTLEYMSLHNIRSAEDLLNYLRIQATF-KGILVKELKDGWSGCLAAIA 174
Query: 171 ALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKN 229
L+ +I +L + ++ + + N + DDD ++ + LP D +++++L N
Sbjct: 175 ELEEEQKIIVLRTKKENVPRLVWANKGGKLGQIDDDFIEMWSKVKLP-DAGNLQEELINN 233
Query: 230 GMKPAT---NTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNG 282
G+KP + ++ KR+ S +NK KK +R K+TN H+ + + +G
Sbjct: 234 GLKPTSVDPSSIKRKVMH-----SQENKQKK-----PRRGKITNTHMKGILKDYSG 279
>gi|327279883|ref|XP_003224685.1| PREDICTED: general transcription factor IIE subunit 2-like [Anolis
carolinensis]
Length = 290
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 19/168 (11%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMED 168
++L NNPK+ ++++K K++LKDK LL L+ K + GI + D+++ P +
Sbjct: 121 EALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGLPNAQKA 180
Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IEKD 225
++AL QI ++ D ++ + Y ND D++ + L+R + P D +D IE+
Sbjct: 181 IKAL--GDQIIFVTRPDKKKILFY-NDKSCQFSVDEEFQKLWRSV--PVDSMDEEKIEEY 235
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
L++ G+ + +I I + KP +K +R K N HL
Sbjct: 236 LKRQGISSMQDA----GPKKIVPIQRRRKPASQK---KRRFKTHNDHL 276
>gi|395739554|ref|XP_002819014.2| PREDICTED: transcription initiation factor IIE subunit beta [Pongo
abelii]
Length = 247
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ ++++K K++++DK LL L+ + + G+ I L+D + +A
Sbjct: 78 EALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKA 137
Query: 172 LKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNG 230
+KA G L N ++ I + ND D++ + L+R + + S D IE+ L++ G
Sbjct: 138 VKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQG 197
Query: 231 MKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ + ++ A I + KP +K +R K N HL
Sbjct: 198 ISSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHL 233
>gi|228300|prf||1802389A transcription factor IIE:SUBUNIT=beta
Length = 291
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ ++++K K++++DK LL L+ + + G+ I L+D + +A
Sbjct: 122 EALVNNPKIENIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKA 181
Query: 172 LKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNG 230
+KA G L N ++ I + ND D++ + L+R + + S D IE+ L++ G
Sbjct: 182 VKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQG 241
Query: 231 MKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ + ++ A I + KP +K +R K N HL
Sbjct: 242 ISSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHL 277
>gi|11611843|gb|AAG39077.1| general transcription factor [Homo sapiens]
Length = 291
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 15/166 (9%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMED 168
++L NNPK+ ++++K K+ ++DK LL L+ + + GI + D++++ P
Sbjct: 122 EALVNNPKIEVIDGKYAFKPKYXVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNXQ-- 179
Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQ 227
+A+KA G L N ++ I + ND D++ + L+R + + S D IE+ L+
Sbjct: 180 -KAVKAXGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLK 238
Query: 228 KNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ G+ + ++ A I + KP +K +R K N HL
Sbjct: 239 RQGISSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHL 277
>gi|365981349|ref|XP_003667508.1| hypothetical protein NDAI_0A01070 [Naumovozyma dairenensis CBS 421]
gi|343766274|emb|CCD22265.1| hypothetical protein NDAI_0A01070 [Naumovozyma dairenensis CBS 421]
Length = 399
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 92/186 (49%), Gaps = 23/186 (12%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
Y+ + N V + L+ K+ +D K+ F Y S +D+ + +L+ L+R F +GI+
Sbjct: 222 YLSLKPNDKVIELLKKLEKISFDPKKNAFKYVSTYDVHSEGELIKLLRSQVTF-KGISCK 280
Query: 157 DLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIAL 215
+LKD +P E + L+ +I +L + D + N+ + D++ ++ ++ L
Sbjct: 281 ELKDGWPQCDETINELEEESKILVLRTKKDRTPRYVWYNNGGDLHRIDEEFIKMWENVQL 340
Query: 216 PSDMLDIEKDLQKNGMKPAT---NTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAH 272
P ++ + LQ G+KPA+ T KR+ ++ KKKK +R K+TN H
Sbjct: 341 PQ-FSELPRKLQDLGLKPASVDPATIKRQTRVEV---------KKKKQ---RRGKITNTH 387
Query: 273 LPELFQ 278
+ + +
Sbjct: 388 MAGILK 393
>gi|402877932|ref|XP_003902662.1| PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor IIE
subunit beta [Papio anubis]
Length = 308
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 11/164 (6%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ ++++K K++++DK LL L+ + + G+ I L+D + +A
Sbjct: 139 EALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKA 198
Query: 172 LKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKN 229
+KA G QI +S D ++ I + ND D++ + L+R + + S D IE+ L++
Sbjct: 199 VKALGDQILFVSRPDKKK-ILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ 257
Query: 230 GMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
G+ + ++ A I + KP +K +R K N HL
Sbjct: 258 GISSMQESGPKKVAP----IQRRKKPASQK---KRRFKTHNEHL 294
>gi|255716314|ref|XP_002554438.1| KLTH0F05368p [Lachancea thermotolerans]
gi|238935821|emb|CAR24001.1| KLTH0F05368p [Lachancea thermotolerans CBS 6340]
Length = 271
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 107/217 (49%), Gaps = 18/217 (8%)
Query: 68 SIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKR 127
S++ + + ++ + + E +A E+I + Y+ +++ V L+N K+ +D K
Sbjct: 61 SLKGTHLSTKLLLATEYIQERGEAVPIEQI--ESYLSLSSENNVIPLLKNINKIKFDPKH 118
Query: 128 --FSYKSKHDLKDKSQLLVLVRK---FPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLL- 181
Y S +D+ +LL L+R F +GI+ +LKD +P E + L++ ++ +L
Sbjct: 119 NTLQYVSIYDVHSAEELLQLLRSQVTF-KGISCKELKDGWPQCTEVIDELESKNRVLVLR 177
Query: 182 SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRR 241
+ D+Q + N D+D ++ + LP ++ + LQ G+KPA+
Sbjct: 178 TKKDNQPRFVWYNFGGSLGGVDEDFVKMWENCKLPQRG-ELPRKLQDLGLKPASVD---- 232
Query: 242 AAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
A ++ SS+ + KK+K ++ K+TN H+ + +
Sbjct: 233 -PATVKRGSSRVEVKKRKQ---RKGKITNTHMAGILK 265
>gi|241625997|ref|XP_002407851.1| transcription initiation factor IIE, beta subunit, putative [Ixodes
scapularis]
gi|215501063|gb|EEC10557.1| transcription initiation factor IIE, beta subunit, putative [Ixodes
scapularis]
Length = 281
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 113 DSLRNNPKVHYD-GKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVME 167
++L+NNPK+ ++ ++ ++LKD+ LL L+ K + G+ + D+++S P V
Sbjct: 114 EALQNNPKLQVTPDNKYCFRPAYNLKDRKSLLRLLDKHDQRGMGGVLLEDIQESLPNVER 173
Query: 168 DLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDL 226
L+AL A I+++ D ++ + Y ND + D++ + L+R +A+ D IE+ L
Sbjct: 174 HLKALGDA-IIYVVRPVDKKKVLFY-NDKSLQFTVDEEFQKLWRSVAVEGIDDQKIEEYL 231
Query: 227 QKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAH 272
QK G+ + Q G+ N +K+K SK+ K H
Sbjct: 232 QKQGIN----------SMQDMGVKKVNSAQKRKKPSSKKAKTFKKH 267
>gi|12861985|dbj|BAB32319.1| unnamed protein product [Mus musculus]
Length = 292
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 98/189 (51%), Gaps = 15/189 (7%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 98 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 157
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDD 205
+ G+ I L+D + +A+K G QI +S D ++ I + ND + + D++
Sbjct: 158 NHDQRGLGGILLEDIEEGLPNSQKAVKGLGDQILXVSRPDKKK-ILFFNDNTLSVFWDEE 216
Query: 206 LKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISK 264
+ L+R +A+ S D IE+ L++ G+ + ++ A+ I + +P +K +
Sbjct: 217 FQXLWRSVAVDSMDEERIEEYLKRQGISSMQESGPKKWAS----IQRRKEPASQK---KR 269
Query: 265 RTKLTNAHL 273
R K N HL
Sbjct: 270 RFKTHNEHL 278
>gi|403214732|emb|CCK69232.1| hypothetical protein KNAG_0C01190 [Kazachstania naganishii CBS
8797]
Length = 241
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 93/183 (50%), Gaps = 16/183 (8%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
Y+ ++ N V D L+ K+ +D K+ F Y S +D+ ++L+ L++ F +GI+
Sbjct: 63 YLSLSPNDKVLDLLKKLEKIEFDPKKNAFRYISTYDVHSPAELIRLLKSQVTF-KGISCK 121
Query: 157 DLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIAL 215
+LKD +P E + L+ +I +L + D + N + DD+ ++ ++ L
Sbjct: 122 ELKDGWPQCDEAINELEEESKILVLRTKKDRTPRYVWYNSGGDLHRIDDEFIKMWENVQL 181
Query: 216 PSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPE 275
P ++ + LQ G+KPA+ A I+ +S+ + KKK+ ++ K+TN H+
Sbjct: 182 PQ-FSELPRKLQDLGLKPASVD-----PASIKRQTSRVEVKKKRQ---RKGKVTNTHMAG 232
Query: 276 LFQ 278
+ +
Sbjct: 233 ILK 235
>gi|342876847|gb|EGU78402.1| hypothetical protein FOXB_11080 [Fusarium oxysporum Fo5176]
Length = 304
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 136 LKDKSQLLVLVRKFPE--GIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAY 192
+KD + LL ++ + G++V DLKD +P + + AL+ +I ++ + D+ +
Sbjct: 158 VKDATSLLAHLQAKTDASGVSVKDLKDGWPDCEDTISALEREHRILVVRTKKDNIPRYVW 217
Query: 193 PNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSK 252
PNDP + K + + +++ + LP + ++ + L G KP + ++ Q
Sbjct: 218 PNDPSLHHKVQPEFQSMWQRVQLPP-LEEMHRKLTSVGQKPTSEDPRKAKDGQA------ 270
Query: 253 NKPKKKKHEISKRT-KLTNAHLPELFQKLNG 282
NKPK +K R K TN H+ L Q +G
Sbjct: 271 NKPKAQKRRKGNRIGKATNVHMAHLMQDYSG 301
>gi|389638834|ref|XP_003717050.1| transcription initiation factor IIE subunit beta [Magnaporthe
oryzae 70-15]
gi|351642869|gb|EHA50731.1| transcription initiation factor IIE subunit beta [Magnaporthe
oryzae 70-15]
gi|440466646|gb|ELQ35904.1| transcription initiation factor IIE subunit beta [Magnaporthe
oryzae Y34]
gi|440486369|gb|ELQ66245.1| transcription initiation factor IIE subunit beta [Magnaporthe
oryzae P131]
Length = 310
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 112/230 (48%), Gaps = 29/230 (12%)
Query: 74 VGAQIKRVIDRLLETRQAFTPEEINRDCYV---DVNANKAVFDSLRNNPKVHY------- 123
+G+ I ++D L E + + +++ + D N +AV ++L+ + KV++
Sbjct: 84 LGSNIIYIVDNLKEHGKPKSLDDVLGHVNLHRRDDNFKRAVVETLKAHTKVNFIRDPKAE 143
Query: 124 ----DGKRFSYKSKH-----DLKDKSQLLVLV--RKFPEGIAVIDLKDSYPTVMEDLQAL 172
+ + K +H +KD++ LL + RK +G++V DLKD +P+ E + L
Sbjct: 144 AADPENAWKTGKYEHLPIIPGVKDETSLLRYLSERKTAQGVSVKDLKDGWPSCDETITKL 203
Query: 173 KAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGM 231
+ A ++ ++ + D + +DP + D + KL++ + +P + DI + L G
Sbjct: 204 EKAHKLLVVRTKKDGVARTVWIDDPSLHHDVDAEFKLMWHRVEVPP-LEDIVRKLAAAGQ 262
Query: 232 KPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLN 281
KP ++ + + A +K+ K KK ++ + K+TN H+ L + +
Sbjct: 263 KPTSDDPQLKVHA-----VAKDTKKNKKRAVNIK-KMTNVHMAGLLKNFD 306
>gi|366998461|ref|XP_003683967.1| hypothetical protein TPHA_0A04600 [Tetrapisispora phaffii CBS 4417]
gi|357522262|emb|CCE61533.1| hypothetical protein TPHA_0A04600 [Tetrapisispora phaffii CBS 4417]
Length = 357
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 95/191 (49%), Gaps = 15/191 (7%)
Query: 94 PEEINRDC-YVDVNANKAVFDSLRNNPKVHYDGKRFSYK--SKHDLKDKSQLLVLVRK-- 148
P +N C Y+ ++ + + L+ K+ +D K SYK S +D+ +L+ L+R
Sbjct: 170 PVLLNELCDYLSISKKDKIVELLKKLEKIQFDDKTNSYKYISTYDVHSTQELMHLLRSQV 229
Query: 149 FPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLK 207
+GI+ +LKD +P E + L+ +I +L + D + N+ + D++
Sbjct: 230 TFKGISCRELKDGWPGCDEAINELEEESKILVLRTKKDRTPRYVWYNNGSLLNNIDEEFV 289
Query: 208 LLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTK 267
++ ++ LP ++ + LQ G+KPA+ A I+ ++K + K+KK +R K
Sbjct: 290 KMWENVQLPQ-FSELPRKLQDLGLKPAS-----VDPATIKRQTTKVEVKRKKQ---RRGK 340
Query: 268 LTNAHLPELFQ 278
+TN H+ + +
Sbjct: 341 ITNTHMAGILK 351
>gi|367017308|ref|XP_003683152.1| hypothetical protein TDEL_0H00820 [Torulaspora delbrueckii]
gi|359750816|emb|CCE93941.1| hypothetical protein TDEL_0H00820 [Torulaspora delbrueckii]
Length = 307
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 92/183 (50%), Gaps = 16/183 (8%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
Y+ + + V + L+ K+ +D K+ F Y S +D+ +L+ L+R F +GI+
Sbjct: 129 YLSMKKDDKVLELLKKLDKIQHDPKKGTFKYMSTYDVHSAQELIHLLRSQVTF-KGISCK 187
Query: 157 DLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIAL 215
+LKD +P E + L+ +I +L + D + N+ + D+D ++ ++ L
Sbjct: 188 ELKDGWPQCDETINELEEDSKILVLRTKKDKTPRYVWYNNGGELNRIDEDFVKMWENVQL 247
Query: 216 PSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPE 275
P ++ + LQ G+KPA+ A ++ +++ + KKKK +R K+TN H+
Sbjct: 248 PQ-FAELPRKLQDLGLKPAS-----VDPATVKRQTTRVEVKKKKQ---RRGKITNTHMAG 298
Query: 276 LFQ 278
+ +
Sbjct: 299 ILK 301
>gi|302686124|ref|XP_003032742.1| hypothetical protein SCHCODRAFT_45252 [Schizophyllum commune H4-8]
gi|300106436|gb|EFI97839.1| hypothetical protein SCHCODRAFT_45252, partial [Schizophyllum
commune H4-8]
Length = 228
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 91/181 (50%), Gaps = 18/181 (9%)
Query: 105 VNANKAVFDSLRNNPKVHYDGKRFSYKSKHD--LKDKSQLLVLVRKF----PEGIAVIDL 158
++ ++ + + RN+ KV +D K Y+ KHD ++++ QLL ++++ GI++ L
Sbjct: 44 LDTDQVLLEKFRNHEKVKWDQKTGLYEYKHDFAVRNREQLLTEIKRYTINKSAGISIRTL 103
Query: 159 KDSYPTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDPRVPIKADDDLKL--LFRDIAL 215
KD++ ++ L+ G++++L D Q + N+ + DD + FRD+
Sbjct: 104 KDAWKEAPTHIEELEKEGKVYVLRTAKDGQMKTVFWNEMSEENEPDDAFVIEKEFRDMWA 163
Query: 216 ---PSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAH 272
D +D+ + L MKP ++ A +G + KP++++ ++ K+TN H
Sbjct: 164 ELKAPDEVDMIRQLVAAEMKPVSSEALPPPVA--KGKKGQKKPRQRQ----RQAKITNTH 217
Query: 273 L 273
L
Sbjct: 218 L 218
>gi|396492880|ref|XP_003843903.1| hypothetical protein LEMA_P015540.1 [Leptosphaeria maculans JN3]
gi|312220483|emb|CBY00424.1| hypothetical protein LEMA_P015540.1 [Leptosphaeria maculans JN3]
Length = 168
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 128 FSYKSKHDLKDKSQL--LVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFD 185
+ YK K +++ +QL + +K G+++ DLKD + TV +D++ ++ ++ + D
Sbjct: 19 YRYKPKLQIRNAAQLKGYLQSQKSAMGLSIKDLKDGWATVADDIKLMEDKNEVLVKRTKD 78
Query: 186 SQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQ 245
+ NDP + + + ++ IA+P++ ++ LQ G+ A TQK+ A
Sbjct: 79 GVARTVWNNDPSMMHPMEPEFAQMWHRIAIPANPDELRSALQGAGLVAA--TQKKEVVA- 135
Query: 246 IQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNG 282
++KNK K K K TN H+ L + +G
Sbjct: 136 ----TNKNKKAKAPR---KNGKQTNTHMAHLLKDFSG 165
>gi|430811653|emb|CCJ30909.1| unnamed protein product [Pneumocystis jirovecii]
Length = 277
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 12/180 (6%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLK--DKSQLLVLVRKFPEGIAVID 157
Y+ ++ D LR N ++ YD + + +K H+++ + + GI V D
Sbjct: 97 YLSMSLTAEFIDRLRTNERIEYDPYKDTYYFKPIHNIRSAESLVSFLSSSVTAVGIMVKD 156
Query: 158 LKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALP 216
LK+ + M++++ L+ GQI +L + D +PN D + K ++ + +P
Sbjct: 157 LKEGWSGAMDEIERLEKDGQILVLRTKKDGLPKSVWPNYSEDQESVDKEFKEIWNSLTIP 216
Query: 217 SDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPEL 276
+ D+ ++L+K G+KP T A + I++ K KK+++ R ++TN HL L
Sbjct: 217 APS-DLPRELEKVGLKP---TSVDPATVKKIPITTLQKNKKRRN---PRGRITNTHLNSL 269
>gi|410926263|ref|XP_003976598.1| PREDICTED: general transcription factor IIE subunit 2-like
[Takifugu rubripes]
Length = 285
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ + +K K++LKDK LL L+ K + G+ + L D + +A
Sbjct: 116 EALVNNPKIEVRDGTYGFKPKYNLKDKKALLRLLDKHDQLGLGGVLLDDVEEGLPNSAKA 175
Query: 172 LKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IEKDLQ 227
+KA G QI ++ D ++ I + ND D++ + L+R ++P D +D IE+ L
Sbjct: 176 IKALGDQIIFVTRPDKKK-ILFYNDKHCQFTVDEEFQKLWR--SVPVDSIDEEKIEEYLN 232
Query: 228 KNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
K G+ T ++ Q K KK+ + ++ K N HL + +
Sbjct: 233 KQGISSMQETGPKKLPIQ--------KRKKQGVQRKRQFKTHNNHLAGILE 275
>gi|358060329|dbj|GAA93734.1| hypothetical protein E5Q_00380 [Mixia osmundae IAM 14324]
Length = 246
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 90/178 (50%), Gaps = 20/178 (11%)
Query: 110 AVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRKFPE--GIAVIDLKDSYPTV 165
+ +LR + +V YD + +S++ H + + L +V+ E GI V LK+S PTV
Sbjct: 63 GLLRALRQHERVEYDPRTDLYSWRPLHRITTTADLYRIVKTEGEKGGIKVSLLKESCPTV 122
Query: 166 MEDLQALKAAGQIWLLSNFDSQE-------DIAYPNDPRVPIKADDDLKLLFRDIALPSD 218
+ ++ L+ G+I +++ +S+E + +P++ I D D + L+ +I P +
Sbjct: 123 EQHIRTLEQDGKI-IVTRGESKEFGKEGPMRMVFPDEIGQKILIDPDFRKLWEEIKTPGE 181
Query: 219 MLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPEL 276
LD+ ++++ G+ A +K I +++NK K+ R K+TN HL L
Sbjct: 182 -LDLPSEMREAGLMAA---KKASILDPIDRTTAQNKKSKR----GARVKITNKHLKSL 231
>gi|147902228|ref|NP_001089256.1| general transcription factor IIE subunit 2 [Xenopus laevis]
gi|267060|sp|P29540.1|T2EB_XENLA RecName: Full=General transcription factor IIE subunit 2; AltName:
Full=Transcription initiation factor IIE subunit beta;
Short=TFIIE-beta
gi|65133|emb|CAA78245.1| transcription factor TFIIE-beta [Xenopus laevis]
gi|58403336|gb|AAH89287.1| MGC84983 protein [Xenopus laevis]
Length = 288
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 20/147 (13%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMED 168
++L NNPK+ ++++K K++LKDK LL L+ K + GI + D+++ P +
Sbjct: 119 EALVNNPKIEIIDGKYAFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGLPNAQKA 178
Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEK---- 224
++AL QI ++ D ++ I + ND D++ + L+R + P D +D EK
Sbjct: 179 IKAL--GDQIVFVTRPDKKK-ILFYNDKSCQFTVDEEFQKLWRSV--PVDSMDDEKIEEY 233
Query: 225 -------DLQKNGMKPATNTQKRRAAA 244
+Q++G K QKR+ A
Sbjct: 234 LKRQGISSMQESGPKKIIPVQKRKKAT 260
>gi|169770299|ref|XP_001819619.1| transcription initiation factor TFIIE, beta subunit [Aspergillus
oryzae RIB40]
gi|238487304|ref|XP_002374890.1| transcription initiation factor TFIIE, beta subunit, putative
[Aspergillus flavus NRRL3357]
gi|83767478|dbj|BAE57617.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699769|gb|EED56108.1| transcription initiation factor TFIIE, beta subunit, putative
[Aspergillus flavus NRRL3357]
gi|391867465|gb|EIT76711.1| transcription initiation factor IIE, beta subunit [Aspergillus
oryzae 3.042]
Length = 291
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 128 FSYKSKHDLKDKSQLL--VLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNF- 184
FS++ H+++ QLL + + G++V +L++ +P V + + L+ G++ + N
Sbjct: 140 FSFRPPHNIRTAEQLLQKLQSQSTAAGMSVRELREGWPNVEDTINQLEKEGKLLVTRNKK 199
Query: 185 DSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAA 244
D + + NDP + DD+ + ++ I +P D ++++L+K G+ P + +A
Sbjct: 200 DDHAKMVWANDPSLIQHFDDEFRQIWEKIRVP-DQQAVKEELEKAGITPTNKNKVTKARP 258
Query: 245 QIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+I+ K KP++ K TN H+
Sbjct: 259 KIEHKKVK-KPRRS-------GKTTNTHM 279
>gi|196002487|ref|XP_002111111.1| hypothetical protein TRIADDRAFT_54747 [Trichoplax adhaerens]
gi|190587062|gb|EDV27115.1| hypothetical protein TRIADDRAFT_54747 [Trichoplax adhaerens]
Length = 286
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 27/199 (13%)
Query: 82 IDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQ 141
+D LL+ Q E ++D +L NN K+ +F +K K D+K K Q
Sbjct: 91 LDELLDRTQTTDIESTDKDWLAK--------HALVNNEKISIQDGKFKFKPKFDIKSKKQ 142
Query: 142 LLVLVRKFPE----GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPR 197
L ++K E G+ + D+K+S P ++ L + + +L+ + ++ + Y ND +
Sbjct: 143 LYRFLKKRYENGLGGVYIDDVKESLPNSENIIKNLDDS--VTILTRPNDKKQVIYFNDIK 200
Query: 198 VPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKK 257
++ K L+ +++ +DIE L+K G+ + G + + P +
Sbjct: 201 NKFDVSEEFKQLWYSVSVDVSEIDIEVYLKKAGI----------TVMEDSGRTKRKAPPR 250
Query: 258 KKHEISKRT---KLTNAHL 273
K SKR+ K TN HL
Sbjct: 251 KNPRQSKRSRQFKFTNTHL 269
>gi|432844438|ref|XP_004065769.1| PREDICTED: general transcription factor IIE subunit 2-like isoform
1 [Oryzias latipes]
gi|432844440|ref|XP_004065770.1| PREDICTED: general transcription factor IIE subunit 2-like isoform
2 [Oryzias latipes]
Length = 287
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 86/173 (49%), Gaps = 19/173 (10%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMED 168
++L NNPK+ + +K K++LKDK LL L+ K + G+ + D+++ P +
Sbjct: 117 EALVNNPKIEVRDGTYGFKPKYNLKDKKALLRLLDKHDQLGLGGVLLDDVEEGLPNAAKA 176
Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IEKD 225
++AL QI ++ D ++ I + ND D++ + L+R + P D +D I++
Sbjct: 177 IKAL--GDQIIFVTRPDKKK-ILFYNDKHCQFTVDEEFQKLWRSV--PVDSIDEEKIDEY 231
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
L+K G+ T ++ + + K KK+ + ++ K N HL + +
Sbjct: 232 LKKQGISSMQETGPKK-------VMTVQKKKKQSGQRKRQFKTHNNHLAGVLE 277
>gi|322711044|gb|EFZ02618.1| Transcription initiation factor IIE, beta subunit, putative
[Metarhizium anisopliae ARSEF 23]
Length = 302
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 79/151 (52%), Gaps = 11/151 (7%)
Query: 135 DLKDKSQLLVLVRKFPE--GIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIA 191
++KD + LL +++ + G++V DLKD +P E L +L+ ++ ++ + D+
Sbjct: 155 NVKDGTSLLAYLQRKTDASGVSVKDLKDGWPDCEETLASLEKQHKVLVVRTKKDNFPRYV 214
Query: 192 YPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISS 251
+ +DP + + ++++ + +PS + D+ + L G KP + +IQ ++
Sbjct: 215 WADDPSLHNSVQPEFQVMWHRVPIPS-VDDMHRKLVNVGQKPTSED-----PLKIQQ-AA 267
Query: 252 KNKPKKKKHEISKRT-KLTNAHLPELFQKLN 281
NKPK +K SKRT K TN H+ L Q +
Sbjct: 268 GNKPKVQKKRASKRTGKATNVHMAHLLQDFS 298
>gi|452843637|gb|EME45572.1| hypothetical protein DOTSEDRAFT_71319 [Dothistroma septosporum
NZE10]
Length = 289
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 19/162 (11%)
Query: 128 FSYKSKHDLKD----KSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSN 183
F Y+ H + + K L + G+ V +LKD +P + + L+ G ++L+
Sbjct: 134 FKYRPLHPVTNAEELKEYLAIRSTYTAAGVTVKELKDGWPDCVPAIDQLEKEG--FVLAT 191
Query: 184 FDSQEDI---AYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
+++ Y + P I DDD + LP+ LDI +L++ G+ P +
Sbjct: 192 RHKKDNAPVRIYADSPSYHIHIDDDFRDFCNKTKLPASELDIRNELERAGITPTS----- 246
Query: 241 RAAAQIQGISSKNKPKKKKHEISK-RTKLTNAHLPELFQKLN 281
Q++ I N KK++ I++ TK+TN H+ + + +
Sbjct: 247 ----QVKEIRKGNTQKKERKRINRIGTKITNKHMNGILKNFD 284
>gi|67538656|ref|XP_663102.1| hypothetical protein AN5498.2 [Aspergillus nidulans FGSC A4]
gi|40743468|gb|EAA62658.1| hypothetical protein AN5498.2 [Aspergillus nidulans FGSC A4]
gi|259485052|tpe|CBF81795.1| TPA: transcription initiation factor TFIIE, beta subunit, putative
(AFU_orthologue; AFUA_6G13130) [Aspergillus nidulans
FGSC A4]
Length = 293
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 74/140 (52%), Gaps = 11/140 (7%)
Query: 109 KAVFDSLRNNPKVHYD-----GK-RFSYKSKHDLKDKSQLLVLVRKFPEGIA--VIDLKD 160
+A+ L+ + KV YD G+ FS++ H+++ QLL ++ G+ V +L++
Sbjct: 117 QALRSILQMHEKVQYDPSGANGEGTFSFRPPHNIRTAEQLLQKLQSQSTGVGMSVRELRE 176
Query: 161 SYPTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDM 219
+P V + + L+ G++ + N D + + NDP + DD+ K ++ I +P
Sbjct: 177 GWPNVEDTINKLEKEGKLLVTRNKKDDHAKMVWANDPSLIQHFDDEFKQIWEKIKIPEQQ 236
Query: 220 LDIEKDLQKNGMKPATNTQK 239
+ ++++L+K G+ P TN K
Sbjct: 237 V-VKEELEKAGITP-TNKNK 254
>gi|406604153|emb|CCH44376.1| Transcription initiation factor IIE subunit beta [Wickerhamomyces
ciferrii]
Length = 288
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 115 LRNNPKVHY--DGKRFSYKSKHDLKDKSQLLVLVRKFP--EGIAVIDLKDSYPTVMEDLQ 170
++N K+++ D Y S H++KDK+ LL+ +R+ P +GI+V +LKD + ++ +
Sbjct: 124 VKNLDKIYFNPDDNTLEYVSIHNIKDKNDLLIFLRQQPTFKGISVKELKDGWNECIQSIN 183
Query: 171 ALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKN 229
L+ G I +L + D+ + + N D++ L+ ++ LP D ++ L K
Sbjct: 184 ELEEEGSILVLRTKKDNHPRLVWANVGGELGIVDEEFVKLWLNVKLP-DRSELPGLLNKR 242
Query: 230 GMKPAT 235
G+KPA+
Sbjct: 243 GLKPAS 248
>gi|320590910|gb|EFX03351.1| transcription initiation factor beta [Grosmannia clavigera kw1407]
Length = 318
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 140/317 (44%), Gaps = 57/317 (17%)
Query: 10 FKKQQEKCQETLSNIAAKSGASRATTT-SRPTPAAASTAARSSPPVKF---SNDTERL-- 63
F KQ+E +L + AAK R T + P+P+ AST + ++P K S+ + R+
Sbjct: 4 FDKQRENFASSLVSAAAKINVRRPVATPASPSPSVASTTSVTTPSKKAKRESDGSVRMVL 63
Query: 64 --------------QHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDC-YVDVNAN 108
Q N+ S +G I +D L + Q P ++ ++ ++
Sbjct: 64 SQNGSGNNNPTIFSQPENTGVGSAIGTNIVYALDYLKQ--QGGKPVSLSTVLGHLSLDRE 121
Query: 109 -----KAVFDSLRNNPKVHY----------------DGKRFSYKSKH---DLKDKSQLLV 144
+ V + +R++P++ + D + +Y+ ++KD++ LL
Sbjct: 122 PEAFRRQVVERMRHHPRITWRPDAGAAASNASATDDDWRTGTYEHLPVIPNVKDRTSLLQ 181
Query: 145 LV--RKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIK 201
+ R +G+ V DLKD +P L AL+ +I ++ + D+ + + +DP + +
Sbjct: 182 HLQRRTDAQGVNVKDLKDGWPDCEATLTALEKEHRILVVRTKKDNHPRMVWLDDPSLCHE 241
Query: 202 ADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHE 261
+ D + L+ +PS + DI + L G KP + + ++ I++ + K+KK
Sbjct: 242 VEPDFQALWHRAEVPS-IDDIVRKLAAAGQKPTSEDPR------LRDIAAPKEKKQKKRA 294
Query: 262 ISKRTKLTNAHLPELFQ 278
+ K TN H+ L +
Sbjct: 295 QRRTGKSTNTHMEHLLK 311
>gi|47213038|emb|CAF93447.1| unnamed protein product [Tetraodon nigroviridis]
Length = 202
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 22/174 (12%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMED 168
++L NNPK+ + +K K++LKDK LL L+ K + G+ + D+++ P
Sbjct: 38 EALLNNPKIEVRDGMYGFKPKYNLKDKKALLRLLDKHDQLGLGGVLLDDVEEGLPNFA-- 95
Query: 169 LQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IEK 224
+A+KA G QI ++ D ++ I + ND D++ + L+R I P D +D IE+
Sbjct: 96 -KAIKALGDQIIFVTRPDKKK-ILFYNDKHCQFTVDEEFQKLWRSI--PVDSIDEEKIEE 151
Query: 225 DLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
L++ G+ T ++ Q K KK+ + + K N HL + +
Sbjct: 152 YLKRQGISSMQETGPKKLPVQ--------KRKKQGVQRKRHFKTHNNHLAGMLE 197
>gi|387916104|gb|AFK11661.1| general transcription factor IIE subunit 2-like protein
[Callorhinchus milii]
Length = 289
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 19/173 (10%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMED 168
++L NNPK+ ++ +K K++LKDK LL L+ K + GI + D+++ P +
Sbjct: 116 EALINNPKIDVLDGKYVFKPKYNLKDKKALLRLLDKHDQRGLGGILLDDIEEGLPNSQKA 175
Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IEKD 225
++AL QI ++ D ++ I + ND D++ + L+R I P D +D IE+
Sbjct: 176 IKAL--GDQIIFVTRPDKKK-ILFYNDKSCQFTMDEEFQKLWRGI--PVDSMDEEKIEEY 230
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
L++ G+ T ++ I + KP ++ ++ K N H+ + +
Sbjct: 231 LKRQGISSMQET----GPKKVMCIQKRKKPGSQR---KRKFKTHNDHMAGILE 276
>gi|225706730|gb|ACO09211.1| Transcription initiation factor IIE subunit beta [Osmerus mordax]
Length = 290
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 15/171 (8%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NN K+ ++++K K+ LKDK LL L+ K + G+ + L D + +A
Sbjct: 120 EALANNAKIEVRDGKYAFKPKYHLKDKKALLRLLDKHDQLGLGGVLLDDVEEGLPNSAKA 179
Query: 172 LKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IEKDLQ 227
+KA G QI ++ D ++ I + ND D++ + L+R I P D +D IE L+
Sbjct: 180 IKALGDQIIFVTRPDKKK-ILFYNDKHCQFDVDEEFQKLWRSI--PVDSMDEEKIEDYLK 236
Query: 228 KNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
+ G+ T ++ I + KP +K +R K N HL + +
Sbjct: 237 RQGISSMQETGPKKVLP----IQKRKKPGGQK---KRRFKTHNDHLAGVLE 280
>gi|406867371|gb|EKD20409.1| transcription initiation factor IIE subunit beta [Marssonina
brunnea f. sp. 'multigermtubi' MB_m1]
Length = 300
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 123/268 (45%), Gaps = 31/268 (11%)
Query: 34 TTTSRPTPAAASTAARS-----SPPVKFSNDTERLQHINSIRKSPVGAQIKRVIDRLLET 88
T S P+PA ++T+ S +P K S + Q + + Q+ VID L +
Sbjct: 34 TPESAPSPAPSNTSTTSKADSKAPKKKESANVVYSQPATTGYGTDAFTQVTYVIDFLKKK 93
Query: 89 RQAFTPEEINR---DCYVDVNANKAVFDSLRNNPKVH------------YDGKRFSYKSK 133
+A T ++I + D + + L+ + +V Y GK F ++
Sbjct: 94 DEAKTFKDILEYLSQMHADDRMKQTIARVLKKHDRVQWFPDPSLKTQTWYSGK-FMHRPI 152
Query: 134 HDLKDKSQLLV-LVRKF-PEGIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDI 190
+++ K LL L RK +G++V DLKD +P E + L+ +I + + D+ +
Sbjct: 153 INVRSKGDLLAHLQRKADAQGVSVKDLKDGWPDCEEAIDELEREHKILVTRTKKDNHARM 212
Query: 191 AYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGIS 250
+ +DP + D + ++++ I LPS + ++ + LQ+ G KPA+ +R A +
Sbjct: 213 VWSDDPTLFHATDPEFQVMWHKIELPS-VDELVRKLQEAGQKPASEDPAKRIKA-----A 266
Query: 251 SKNKPKKKKHEISKRTKLTNAHLPELFQ 278
K K KKK+ S K TN H+ L +
Sbjct: 267 PKLKEKKKRAARSG-GKTTNLHMSHLLK 293
>gi|451854776|gb|EMD68068.1| hypothetical protein COCSADRAFT_133355 [Cochliobolus sativus
ND90Pr]
Length = 264
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 120 KVHYDGK--RFSYKSKHDLKDKSQL--LVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAA 175
++ +D + R+ YKSK D+ +++QL +K G+ + DLKD + V ED+ ++
Sbjct: 105 RISWDSQNERYKYKSKLDIHNRAQLKGHFQTQKSALGLQIKDLKDGWSNVAEDITKMEEK 164
Query: 176 GQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT 235
++ + D + NDP + + D + + +P + ++ K L N M AT
Sbjct: 165 NEVLVRRAKDGVPKTVWANDPSLMLPMDPVFAKTWHSVQVPDNPEELRKVLLANKMTAAT 224
Query: 236 NTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNG 282
+ AA+ KKK + K TN H+ + + +G
Sbjct: 225 QAKVIVAASTT----------KKKKGPRRGGKQTNTHMIGILKDFSG 261
>gi|62858005|ref|NP_001016555.1| general transcription factor IIE, polypeptide 2, beta 34kDa
[Xenopus (Silurana) tropicalis]
gi|89271975|emb|CAJ82261.1| general transcription factor IIE, polypeptide 2, beta [Xenopus
(Silurana) tropicalis]
gi|213624256|gb|AAI70853.1| general transcription factor IIE, polypeptide 2, beta 34kDa
[Xenopus (Silurana) tropicalis]
gi|213627171|gb|AAI70851.1| general transcription factor IIE, polypeptide 2, beta 34kDa
[Xenopus (Silurana) tropicalis]
Length = 288
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 20/202 (9%)
Query: 45 STAARSSPPVKFSNDTERLQHINSIRKSPVGAQIKRVIDRLLETRQA------FTPEEI- 97
S + S P + SN + L+ ++ G K V ++TR T +EI
Sbjct: 43 SGTSGSKPSLDGSNGSFNLKSLSGSSGYKFGVLAKIV--NYMKTRHQRGDTHPLTLDEIL 100
Query: 98 NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GI 153
+ ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+ K + G+
Sbjct: 101 DETQHLDIGIKQKQWLMSEALVNNPKIEIIDGKYAFKPKYNLKDKKALLRLLDKHDQRGL 160
Query: 154 AVIDLKDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRD 212
I L+D + +A+KA G QI ++ D ++ I + ND D++ + L+R
Sbjct: 161 GGILLEDIEEGLPNSQKAIKALGDQIVFVTRPDKKK-ILFYNDKSCQFTVDEEFQKLWR- 218
Query: 213 IALPSDMLD---IEKDLQKNGM 231
++P D +D IE+ L++ G+
Sbjct: 219 -SVPVDSMDDEKIEEYLKRQGI 239
>gi|74147011|dbj|BAE27444.1| unnamed protein product [Mus musculus]
Length = 281
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 92 FTPEEI-NRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR 147
T EEI + ++D+ + + ++L NNPK+ ++++K K++LKDK LL L+
Sbjct: 98 LTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLD 157
Query: 148 KFPE-GIAVIDLKDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDD 205
+ G+ I L+D + +A+KA G QI +S D ++ I + ND D++
Sbjct: 158 NHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKK-ILFFNDKSCQFSVDEE 216
Query: 206 LKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRAAA 244
+ L+R + + S D IE+ L++ G+ + ++ A+
Sbjct: 217 FQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVAS 256
>gi|298711813|emb|CBJ32840.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 263
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 93 TPEEINRDCYVDV--NANKAVFDSLRNNPKVH-------YDGKRFSYKSKHDLKDKSQLL 143
T EI+ VD+ ++ V + L NPKV F+Y +K+ + +KS+LL
Sbjct: 80 TITEISDGTDVDLRKGRDEHVLEMLVANPKVEALHDEDPLQETAFTYMAKYAVTNKSELL 139
Query: 144 VLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYP 193
L+ + GI +LKD+Y +V D++A++ AG++ + N ++ + YP
Sbjct: 140 QLINRCKGGICWEELKDTYSSVEGDMKAMQEAGKVIAVVNKETHKMNLYP 189
>gi|403370550|gb|EJY85141.1| hypothetical protein OXYTRI_17003 [Oxytricha trifallax]
Length = 265
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 98 NRDCYVDVNANKAVFDSLRNNPK-VHY--DGKRFSYKSKHDLKDKSQLLVLVRKFPEGIA 154
N + V+A + + D + NNPK + Y D + F +KSK+ +K K LL L+ PEGI
Sbjct: 66 NASVFGKVDAYQFI-DYISNNPKEISYNEDRREFVFKSKYGIKSKEDLLKLLLNNPEGIK 124
Query: 155 V-IDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYP---NDPRVPIK 201
DL+ Y + EDLQ LK G I ++ +E + +P ND V ++
Sbjct: 125 EDDDLRVCYKGLEEDLQELKNNGWIRVIKFQRDKEIVLFPVNKNDGEVEVR 175
>gi|47086579|ref|NP_997896.1| general transcription factor IIE, polypeptide 2, beta [Danio rerio]
gi|45501211|gb|AAH67173.1| General transcription factor IIE, polypeptide 2, beta [Danio rerio]
Length = 291
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 19/168 (11%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMED 168
++L +NPK+ ++++K K+ LKDK LL L+ K + G+ + D+++ P +
Sbjct: 121 EALASNPKIDVREGKYAFKPKYHLKDKKALLRLLDKHDQLGLGGVLLDDVEEGLPNAAKA 180
Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IEKD 225
++AL QI ++ D ++ + Y ND D++ + L+R + P D +D IE+
Sbjct: 181 IKAL--GDQIIFVTRPDKKKILFY-NDKHCQFVVDEEFQKLWRSV--PVDSIDEEKIEEY 235
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
L+K G+ T ++ I + KP ++ +R K N HL
Sbjct: 236 LKKQGISSMQETGPKKMTP----IQKRKKPGTQR---KRRYKTHNDHL 276
>gi|291240305|ref|XP_002740060.1| PREDICTED: general transcription factor IIE, polypeptide 2, beta
34kDa-like isoform 2 [Saccoglossus kowalevskii]
Length = 281
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 89/174 (51%), Gaps = 15/174 (8%)
Query: 111 VFDSLRNNPKVHY-DGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTV 165
+ ++L NNPK+ + ++S+K K++L+ + LL L+ + + GI + D+++S P
Sbjct: 112 ITEALCNNPKIQVSESNKYSFKPKYNLRGRKDLLRLLDRHDQKGLGGILLEDIQESLPMA 171
Query: 166 MEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEK 224
+ ++ L QI ++ ++ I + ND D+D + L+R IA+ S D IE+
Sbjct: 172 EKAVKIL--GDQIIIVVRPVDKKKILFYNDKSCQFTVDEDFQKLWRSIAVDSLDEGKIEE 229
Query: 225 DLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
L+K G+ + ++ + +Q + KP +K + K N H+ ++ +
Sbjct: 230 YLKKQGITSMQDIGGKKVSKPVQ---KRRKPSRKGMKFKKH----NDHMGDVLK 276
>gi|348529474|ref|XP_003452238.1| PREDICTED: general transcription factor IIE subunit 2-like isoform
3 [Oreochromis niloticus]
Length = 287
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 18/184 (9%)
Query: 103 VDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDL 158
+D+ N+ + ++L +NPK+ + +K K++LKDK LL L+ K + G+ + L
Sbjct: 104 LDIRMNQKQWLMNEALVSNPKIEVRDGTYGFKPKYNLKDKKALLRLLDKHDQLGLGGVLL 163
Query: 159 KDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS 217
+D + +A+KA G QI ++ D ++ I + ND D++ + L+R + P
Sbjct: 164 EDVEEGLPNSAKAIKALGDQIIFVTRPDKKK-ILFYNDKHCQFAVDEEFQKLWRSV--PV 220
Query: 218 DMLD---IEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLP 274
D +D IE+ L+K G+ T ++ IQ K KK+ + K N HL
Sbjct: 221 DSIDEEKIEEYLKKQGISSMQETGPKKVLP-IQ------KRKKQAGNRKRHFKTHNNHLA 273
Query: 275 ELFQ 278
L +
Sbjct: 274 GLLE 277
>gi|348529472|ref|XP_003452237.1| PREDICTED: general transcription factor IIE subunit 2-like isoform
2 [Oreochromis niloticus]
Length = 287
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 18/184 (9%)
Query: 103 VDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDL 158
+D+ N+ + ++L +NPK+ + +K K++LKDK LL L+ K + G+ + L
Sbjct: 104 LDIRMNQKQWLMNEALVSNPKIEVRDGTYGFKPKYNLKDKKALLRLLDKHDQLGLGGVLL 163
Query: 159 KDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS 217
+D + +A+KA G QI ++ D ++ I + ND D++ + L+R + P
Sbjct: 164 EDVEEGLPNSAKAIKALGDQIIFVTRPDKKK-ILFYNDKHCQFAVDEEFQKLWRSV--PV 220
Query: 218 DMLD---IEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLP 274
D +D IE+ L+K G+ T ++ IQ K KK+ + K N HL
Sbjct: 221 DSIDEEKIEEYLKKQGISSMQETGPKKVLP-IQ------KRKKQAGNRKRHFKTHNNHLA 273
Query: 275 ELFQ 278
L +
Sbjct: 274 GLLE 277
>gi|403372843|gb|EJY86329.1| General transcription factor IIE subunit 2 [Oxytricha trifallax]
Length = 265
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 98 NRDCYVDVNANKAVFDSLRNNPK-VHY--DGKRFSYKSKHDLKDKSQLLVLVRKFPEGIA 154
N + V+A + + D + NNPK + Y D + F +KSK+ +K K LL L+ PEGI
Sbjct: 66 NASVFGKVDAYQFI-DYITNNPKEISYNEDRREFVFKSKYGIKSKEDLLKLLLNNPEGIK 124
Query: 155 V-IDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYP---NDPRVPIK 201
DL+ Y + EDLQ LK G I ++ ++ + +P ND +V ++
Sbjct: 125 EDDDLRVCYKGLEEDLQELKNNGWIRVIKFQRDKQIVLFPVNKNDGKVEVR 175
>gi|322698745|gb|EFY90513.1| transcription initiation factor IIE subunit beta [Metarhizium
acridum CQMa 102]
Length = 390
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 142/314 (45%), Gaps = 62/314 (19%)
Query: 10 FKKQQEKCQETLSNIAAK------SGASRATTTSRPTP-------AAASTAARS---SPP 53
+KQ + TL++ AAK + A +AT+ + P+P + TA R +P
Sbjct: 93 LEKQSSAFRGTLASAAAKLSNPSSTSAGKATSLAPPSPSPSAASDSTTPTAKRKRDLAPE 152
Query: 54 VKFSN----------DTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYV 103
V FS T+ + ++K I +ID L + ++F PEE R+
Sbjct: 153 VPFSQPTLTGYGAEVKTQMAFAVEYLKKKGEPKSITDIIDHL--SLRSF-PEEHKRE--- 206
Query: 104 DVNANKAVFDSLRNNPKVH-----------YDGKRFSYKS-KHDLKDKSQLLVLVRKFPE 151
+ + LR +P+V + +SY+ ++KD + LL +++ +
Sbjct: 207 -------LTEGLRGHPRVEWKPDASLSEQTWKTGMYSYRPIILNVKDGTSLLAYLQRKTD 259
Query: 152 --GIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKL 208
G++V DLKD +P E L +L+ ++ ++ + D+ + +DP + + ++
Sbjct: 260 ASGVSVKDLKDGWPDCEETLASLEKQHKVLVVRTKKDNFPRYVWADDPSLHNAVQPEFQV 319
Query: 209 LFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRT-K 267
++ + +PS + D+ + L G KP + +IQ ++ NKPK +K SKRT K
Sbjct: 320 MWHRVPIPS-VEDMHRKLVNVGQKPTSED-----PLKIQQ-AAGNKPKVQKKRASKRTGK 372
Query: 268 LTNAHLPELFQKLN 281
TN H+ L Q +
Sbjct: 373 ATNVHMAHLLQDFS 386
>gi|308321341|gb|ADO27822.1| general transcription factor IIe subunit 2 [Ictalurus furcatus]
Length = 289
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 86/168 (51%), Gaps = 19/168 (11%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMED 168
++L +NPK+ ++++K K+ LKDK LL L+ K + G+ + D+++ P +
Sbjct: 119 EALASNPKIDVREGKYAFKPKYHLKDKKALLRLLDKHDQQGLGGVLLDDVEEGLPNAAKA 178
Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IEKD 225
++AL QI ++ D ++ I + ND + D++ + L+R + P D +D IE+
Sbjct: 179 IKAL--GDQIIFVARPDKKK-ILFYNDKHCHFEVDEEFQKLWRSV--PVDSIDDEKIEEY 233
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
L++ G+ +T ++ ++ K KK + +R K N HL
Sbjct: 234 LKRQGISSMQDTGPKK-------MTPVQKRKKSGTQKKRRFKTHNDHL 274
>gi|348529470|ref|XP_003452236.1| PREDICTED: general transcription factor IIE subunit 2-like isoform
1 [Oreochromis niloticus]
Length = 297
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 18/184 (9%)
Query: 103 VDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDL 158
+D+ N+ + ++L +NPK+ + +K K++LKDK LL L+ K + G+ + L
Sbjct: 114 LDIRMNQKQWLMNEALVSNPKIEVRDGTYGFKPKYNLKDKKALLRLLDKHDQLGLGGVLL 173
Query: 159 KDSYPTVMEDLQALKAAG-QIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS 217
+D + +A+KA G QI ++ D ++ I + ND D++ + L+R + P
Sbjct: 174 EDVEEGLPNSAKAIKALGDQIIFVTRPDKKK-ILFYNDKHCQFAVDEEFQKLWRSV--PV 230
Query: 218 DMLD---IEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLP 274
D +D IE+ L+K G+ T ++ IQ K KK+ + K N HL
Sbjct: 231 DSIDEEKIEEYLKKQGISSMQETGPKKVLP-IQ------KRKKQAGNRKRHFKTHNNHLA 283
Query: 275 ELFQ 278
L +
Sbjct: 284 GLLE 287
>gi|388326871|gb|AFK28345.1| putative transcription initiation factor, partial [Helianthus
anomalus]
gi|388326873|gb|AFK28346.1| putative transcription initiation factor, partial [Helianthus
anomalus]
gi|388326877|gb|AFK28348.1| putative transcription initiation factor, partial [Helianthus
petiolaris]
gi|388326887|gb|AFK28353.1| putative transcription initiation factor, partial [Helianthus
petiolaris]
gi|388326901|gb|AFK28360.1| putative transcription initiation factor, partial [Helianthus
niveus]
gi|388326905|gb|AFK28362.1| putative transcription initiation factor, partial [Helianthus
debilis]
gi|388326907|gb|AFK28363.1| putative transcription initiation factor, partial [Helianthus
debilis]
Length = 27
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 22/27 (81%)
Query: 171 ALKAAGQIWLLSNFDSQEDIAYPNDPR 197
LKA QIWLLS DSQE+IAYPNDPR
Sbjct: 1 VLKAGRQIWLLSTIDSQEEIAYPNDPR 27
>gi|452000939|gb|EMD93399.1| hypothetical protein COCHEDRAFT_1020498 [Cochliobolus
heterostrophus C5]
Length = 264
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 120 KVHYDGK--RFSYKSKHDLKDKSQL--LVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAA 175
++ +D + R+ YKSK D+ +++QL +K G+ + DLKD + V ED+ ++
Sbjct: 105 RISWDSQNERYKYKSKLDIHNRAQLKGHFQTQKSALGLQIKDLKDGWSNVAEDITKMEEK 164
Query: 176 GQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT 235
++ + D + NDP + + D + + +P + ++ K L N M AT
Sbjct: 165 NEVLVRRAKDGVPKTVWANDPSLMLPMDPVFAKTWHSVQVPDNPEELRKVLLANKMTAAT 224
Query: 236 NTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNG 282
+ AA KKK + K TN H+ + + +G
Sbjct: 225 QAKVIVAAPTT----------KKKKGPRRGGKQTNTHMIGILKDFSG 261
>gi|401624785|gb|EJS42826.1| tfa2p [Saccharomyces arboricola H-6]
Length = 328
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
Y+ + + V + L+ ++ +D K+ F Y S +D+ S+LL L+R F +GI+
Sbjct: 150 YLSMKTDDKVIELLKKLDRIEFDPKKGSFKYLSTYDVHSPSELLKLLRSQVTF-KGISCK 208
Query: 157 DLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIAL 215
DLKD +P E + L+ +I +L + D + N D++ ++ ++ L
Sbjct: 209 DLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYVWYNSGGNLKCIDEEFVKMWENVQL 268
Query: 216 PSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPE 275
P ++ + LQ G+KPA+ A I+ + + + KKK+ ++ K+TN H+
Sbjct: 269 P-QFAELPRKLQDLGLKPASVD-----PATIKRQTKRVEVKKKRQ---RKGKITNTHMTG 319
Query: 276 LFQ 278
+ +
Sbjct: 320 ILK 322
>gi|402085977|gb|EJT80875.1| hypothetical protein GGTG_00868 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 293
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 136 LKDKSQLLVLVRKF--PEGIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAY 192
+KD+ LL +R +G+AV D+KD + + + ++A ++ ++ + +
Sbjct: 151 VKDEHALLAHLRSLRQAQGLAVKDIKDGWADCEKAIDRMEAEHKLLVVRAKKGGLARSVW 210
Query: 193 PNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSK 252
+DP + DD+ K+LF + +P+ D+ + L + G KP + + +IQ + K
Sbjct: 211 IDDPALNHDVDDEFKILFHRVEMPA-AEDMVRKLTQVGQKPTSEDPR----LKIQAVEKK 265
Query: 253 NKPKKKKHEISKRTKLTNAHLPELFQKLN 281
K K + ++R TN H+ L +K N
Sbjct: 266 QKKKSARRSGAQR---TNTHMAHLLEKFN 291
>gi|380017987|ref|XP_003692922.1| PREDICTED: general transcription factor IIE subunit 2-like [Apis
florea]
Length = 285
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 29/179 (16%)
Query: 113 DSLRNNPKVHY--DGKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVM 166
++L NPK+ DG RF +K+ + +KDK LL L++ K GI + D+++S P
Sbjct: 117 EALVKNPKIEVTSDG-RFVFKAMYKIKDKKSLLRLLKQQDLKGLGGILLEDIQESLPHCD 175
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IE 223
+ L++L+ +I ++ ++ I + ND DD+ + L+R +A+ D +D I+
Sbjct: 176 KHLKSLQ--NEILFITRPLDKKKIVFYNDKTAQFPIDDEFQKLWRSVAV--DAMDDQKID 231
Query: 224 KDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLT----NAHLPELFQ 278
+ L+K G++ + ++ A P K+K ISKR + N HL ++ +
Sbjct: 232 EYLEKQGIRSMQDHGPKKPA-----------PIKRKKPISKRKQFKKPRDNEHLADVLE 279
>gi|224007867|ref|XP_002292893.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971755|gb|EED90089.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 562
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 11/126 (8%)
Query: 128 FSYKSKHD-LKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDS 186
F Y++K ++DKS LL + + G+ DL D+Y V DLQ+L G++ + N +
Sbjct: 123 FGYRAKFSTVRDKSTLLAQINRCKNGVKWSDLLDAYDGVEGDLQSLLRGGEVLGVLNSEE 182
Query: 187 QEDIAYPNDPRVPIKADDDLKLLF------RDIALPSDMLDIEKDLQKNGMKPATNTQKR 240
++ I +P + ++ D + + R IAL +D +++ L++N + A +R
Sbjct: 183 KDKILFPRGEQFLVELDGVVSVSLPVLPDERAIALITD--PVQRQLKRN--EVARLKHQR 238
Query: 241 RAAAQI 246
R A+QI
Sbjct: 239 RLASQI 244
>gi|149247190|ref|XP_001528020.1| hypothetical protein LELG_00540 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146447974|gb|EDK42362.1| hypothetical protein LELG_00540 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 302
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 61 ERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPK 120
+++ H N+ S + Q+ ++ + E + E+ VD+ + L+ +
Sbjct: 88 QKITH-NNASGSHLSTQLHLAVEYIKEQDHPVSIAELQSMLAVDIE--HTLLPLLKEIDR 144
Query: 121 VHYDGKRFSYKSKHDLKDKSQLLVLVRK--FPEGIAVIDLKDSYPTVMEDLQALKAAGQI 178
V + G+ F Y S H++K LL +RK +GI+V +LKD + ++ + L+A +I
Sbjct: 145 VKFTGRTFEYVSLHNIKSADDLLEFLRKQTTSKGISVKELKDGWSGCVQAIDKLEAENKI 204
Query: 179 WLLSN-FDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNT 237
+L N ++ + + N D+ K ++ ++ LP D + + L G+KP
Sbjct: 205 LVLRNKKENAPRLVWANAGGELGTISDEFKDMWVNVKLP-DPDSLYQKLIDQGLKP---- 259
Query: 238 QKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
A ++ + + ++KK + ++R K+TN H+ ++ +
Sbjct: 260 ----TGADPALLNKQPQQQEKKQKKARRGKITNTHMKDILK 296
>gi|328785332|ref|XP_001120176.2| PREDICTED: general transcription factor IIE subunit 2-like [Apis
mellifera]
Length = 284
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 29/179 (16%)
Query: 113 DSLRNNPKVHY--DGKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVM 166
++L NPK+ DG RF +K+ + +KDK LL L++ K GI + D+++S P
Sbjct: 116 EALVKNPKIEVTSDG-RFVFKAMYKIKDKKSLLRLLKQQDLKGLGGILLEDIQESLPHCD 174
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IE 223
+ L++L+ +I ++ ++ I + ND DD+ + L+R +A+ D +D I+
Sbjct: 175 KHLKSLQ--NEILFITRPLDKKKIVFYNDKTAQFPIDDEFQKLWRSVAV--DAMDDQKID 230
Query: 224 KDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLT----NAHLPELFQ 278
+ L+K G++ + ++ A P K+K ISKR + N HL ++ +
Sbjct: 231 EYLEKQGIRSMQDHGPKKPA-----------PIKRKKPISKRKQFKKPRDNEHLADVLE 278
>gi|50556002|ref|XP_505409.1| YALI0F14355p [Yarrowia lipolytica]
gi|49651279|emb|CAG78218.1| YALI0F14355p [Yarrowia lipolytica CLIB122]
Length = 265
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 24/156 (15%)
Query: 128 FSYKSKHDLKDKSQLLVLVRKFP--EGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFD 185
F Y K +++ K+QL+ ++ P +G++V DLKD + ++ ++ L+ +G + +L
Sbjct: 115 FEYMPKFNIRTKAQLMAFLKSQPTAKGLSVRDLKDGWADCLDSIEELEQSGDLIVLRTKK 174
Query: 186 SQEDIAYPNDPRV-------PIK-ADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNT 237
N PR+ PI D + + ++ I +P D ++ L++ G+KP +
Sbjct: 175 E-------NSPRMMWANMGGPIGMVDGEFRSMWSQIKVP-DESELPSKLEEAGLKPTSVD 226
Query: 238 QKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ + G SK K + +R+K+TN HL
Sbjct: 227 PATIKSNKANGNGSK------KQKKPRRSKITNTHL 256
>gi|409075021|gb|EKM75407.1| hypothetical protein AGABI1DRAFT_109474 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426193561|gb|EKV43494.1| hypothetical protein AGABI2DRAFT_227224 [Agaricus bisporus var.
bisporus H97]
Length = 238
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 97/211 (45%), Gaps = 17/211 (8%)
Query: 74 VGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKR--FSYK 131
V Q+ + L T ++I ++ N + + + + KV YD K +SYK
Sbjct: 19 VNTQLVYAVSHLKSTHNPMRLQDIAIVTNTPLDTNHLLLEKFKAHDKVQYDPKTDLYSYK 78
Query: 132 SKHDLKDKSQLLVLVRKFP---EGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNF-DSQ 187
+ + + K+ LLV +++ GI+ LKDS+ + ++ L+ G++ + D Q
Sbjct: 79 HEFNFRSKAALLVEIQRQTRKGSGISARALKDSWKEAPQAIEELEKEGEVLVTRTVKDGQ 138
Query: 188 EDIAY-----PNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRA 242
+ + P + +++ + L+ D+ +P+D+ D+ K L G++ TN +
Sbjct: 139 LRMVFYNELKPEEEGAGKLVEEEFRKLWHDLKVPNDV-DLLKQLANEGLQ-VTNAESSLP 196
Query: 243 AAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
A ++K K K+ ++ ++TN HL
Sbjct: 197 KAP----TTKKKGKRGGAPRQRQVRITNTHL 223
>gi|156844380|ref|XP_001645253.1| hypothetical protein Kpol_1060p51 [Vanderwaltozyma polyspora DSM
70294]
gi|156115912|gb|EDO17395.1| hypothetical protein Kpol_1060p51 [Vanderwaltozyma polyspora DSM
70294]
Length = 329
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 22/186 (11%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
Y+ + N + + L+ K+ +D + F Y S +D+ +LL L+R F +GI+
Sbjct: 151 YLSITKNDKIVELLKKLEKIEFDSAKGSFKYMSTYDVHSAQELLNLLRSQVTF-KGISCR 209
Query: 157 DLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIAL 215
+LKD +P E + L+ +I +L + D + N+ + D+D ++ +I L
Sbjct: 210 ELKDGWPQCDETINELEEESKILVLRTKKDRTPRYVWYNNGGLLNHIDEDFVKMWENIQL 269
Query: 216 PSDMLDIEKDLQKNGMKPAT---NTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAH 272
P ++ + LQ G+KPA+ T KR+ + +R K+TN H
Sbjct: 270 PQ-FSELPRKLQDLGLKPASVDPATIKRQTTKIDIKKKKQ-----------RRGKITNTH 317
Query: 273 LPELFQ 278
+ + +
Sbjct: 318 MAGILK 323
>gi|50294380|ref|XP_449601.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528915|emb|CAG62577.1| unnamed protein product [Candida glabrata]
Length = 315
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 91/183 (49%), Gaps = 16/183 (8%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
Y+ + + V L+ ++ +D K+ F Y S +D+ +LL L++ F +GI+
Sbjct: 137 YLSMKRDDKVIGLLKKLERIEFDEKKSTFKYLSTYDVHSAQELLTLLKNQVTF-KGISFK 195
Query: 157 DLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIAL 215
DLKD +P E + L+ QI +L + D + N D++ ++ ++ L
Sbjct: 196 DLKDGWPQCEETINDLEEESQILVLRTKKDKTPRYVWYNRGGNLNCIDEEFVKVWENVQL 255
Query: 216 PSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPE 275
P ++ + LQ+ G+KPA+ + ++ +++ + KKK++ +R K+TN H+
Sbjct: 256 PQ-FTELPRKLQELGLKPAS-----IDPSSVKRQTTRVEVKKKRN---RRGKITNTHMAG 306
Query: 276 LFQ 278
+ +
Sbjct: 307 ILK 309
>gi|156353006|ref|XP_001622871.1| predicted protein [Nematostella vectensis]
gi|156209497|gb|EDO30771.1| predicted protein [Nematostella vectensis]
Length = 288
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 85/167 (50%), Gaps = 15/167 (8%)
Query: 88 TRQAFTP----EEINRDCYVDVNANKAVF---DSLRNNPKVHYDGKRFSYKSKHDLKDKS 140
TRQ F P E +++ Y D+N N + ++L+ NPK+ + +F++ K+ ++DK
Sbjct: 90 TRQ-FEPLSLDEILDKINYTDINPNDKSWLENNALKENPKLAFKDGKFAFSPKYHIRDKK 148
Query: 141 QLLVLVRKFPE----GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDP 196
QL+ L+ K E GI + D+++S P D + +I ++ ++ + + N+
Sbjct: 149 QLVKLLEKHEERGHGGILLDDVRESLPDA--DKIVRNVSSRIMFITRSCDKKVLLFYNNK 206
Query: 197 RVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRRA 242
++ D++ + +R +++ DIEK L K G+ +T +R
Sbjct: 207 GYKMEIDEEFQKHWRAVSVDGIGEADIEKYLVKAGISTMQDTGVKRT 253
>gi|207343352|gb|EDZ70833.1| YKR062Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 328
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
Y+ + + V + L+ ++ +D K+ F Y S +D+ S+LL L+R F +GI+
Sbjct: 150 YLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTYDVHSPSELLKLLRSQVTF-KGISCK 208
Query: 157 DLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIAL 215
DLKD +P E + L+ +I +L + D + N D++ ++ ++ L
Sbjct: 209 DLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYVWYNSGGNLKCIDEEFVKMWENVQL 268
Query: 216 PSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPE 275
P ++ + LQ G+KPA+ A I+ + + + KKK+ ++ K+TN H+
Sbjct: 269 PQ-FAELPRKLQDLGLKPAS-----VDPATIKRQTKRVEVKKKRQ---RKGKITNTHMTG 319
Query: 276 LFQ 278
+ +
Sbjct: 320 ILK 322
>gi|190409875|gb|EDV13140.1| transcription initiation factor IIE beta subunit [Saccharomyces
cerevisiae RM11-1a]
gi|323332643|gb|EGA74049.1| Tfa2p [Saccharomyces cerevisiae AWRI796]
Length = 328
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
Y+ + + V + L+ ++ +D K+ F Y S +D+ S+LL L+R F +GI+
Sbjct: 150 YLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTYDVHSPSELLKLLRSQVTF-KGISCK 208
Query: 157 DLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIAL 215
DLKD +P E + L+ +I +L + D + N D++ ++ ++ L
Sbjct: 209 DLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYVWYNSGGNLKCIDEEFVKMWENVQL 268
Query: 216 PSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPE 275
P ++ + LQ G+KPA+ A I+ + + + KKK+ ++ K+TN H+
Sbjct: 269 PQ-FAELPRKLQDLGLKPAS-----VDPATIKRQTKRVEVKKKRQ---RKGKITNTHMTG 319
Query: 276 LFQ 278
+ +
Sbjct: 320 ILK 322
>gi|6322915|ref|NP_012988.1| Tfa2p [Saccharomyces cerevisiae S288c]
gi|308153548|sp|P36145.3|T2EB_YEAST RecName: Full=Transcription initiation factor IIE subunit beta;
Short=TFIIE-beta; AltName: Full=Factor A 43 kDa subunit;
AltName: Full=Transcription factor A small subunit
gi|486527|emb|CAA82141.1| TFA2 [Saccharomyces cerevisiae]
gi|151941602|gb|EDN59965.1| transcription factor TFIIE subunit [Saccharomyces cerevisiae
YJM789]
gi|256269290|gb|EEU04601.1| Tfa2p [Saccharomyces cerevisiae JAY291]
gi|259147891|emb|CAY81141.1| Tfa2p [Saccharomyces cerevisiae EC1118]
gi|285813316|tpg|DAA09213.1| TPA: Tfa2p [Saccharomyces cerevisiae S288c]
gi|323336792|gb|EGA78056.1| Tfa2p [Saccharomyces cerevisiae Vin13]
gi|349579621|dbj|GAA24783.1| K7_Tfa2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764435|gb|EHN05958.1| Tfa2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298204|gb|EIW09302.1| Tfa2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 328
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
Y+ + + V + L+ ++ +D K+ F Y S +D+ S+LL L+R F +GI+
Sbjct: 150 YLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTYDVHSPSELLKLLRSQVTF-KGISCK 208
Query: 157 DLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIAL 215
DLKD +P E + L+ +I +L + D + N D++ ++ ++ L
Sbjct: 209 DLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYVWYNSGGNLKCIDEEFVKMWENVQL 268
Query: 216 PSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPE 275
P ++ + LQ G+KPA+ A I+ + + + KKK+ ++ K+TN H+
Sbjct: 269 PQ-FAELPRKLQDLGLKPAS-----VDPATIKRQTKRVEVKKKRQ---RKGKITNTHMTG 319
Query: 276 LFQ 278
+ +
Sbjct: 320 ILK 322
>gi|427787975|gb|JAA59439.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 280
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 89/176 (50%), Gaps = 28/176 (15%)
Query: 113 DSLRNNPK--VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVM 166
++L+NNPK V +DGK + ++ ++LKD+ LL L+ K + G+ + D+++S P V
Sbjct: 113 EALQNNPKLQVTHDGK-YCFRPAYNLKDRKSLLRLLDKHDQRGLGGVLLEDVQESLPNVE 171
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKD 225
L+ L I+++ D ++ + Y ND + D++ + L+R +A+ D IE+
Sbjct: 172 RHLKVL-GDSVIYVVRPVDKKKVLFY-NDKSLQFSVDEEFQKLWRSVAVEGIDDQKIEEY 229
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLN 281
LQK QGI+S KK ++++ K ++ + F+K N
Sbjct: 230 LQK------------------QGITSMQDMGVKKVNVAQKRKKPSSKRAKTFKKHN 267
>gi|346468845|gb|AEO34267.1| hypothetical protein [Amblyomma maculatum]
Length = 280
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 28/176 (15%)
Query: 113 DSLRNNPK--VHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVM 166
++L+NNPK V DGK + ++ ++LKD+ LL L+ K + G+ + D+++S P V
Sbjct: 113 EALQNNPKLQVTLDGK-YCFRPAYNLKDRKSLLRLLDKHDQRGLGGVLLEDVQESLPNVE 171
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKD 225
L+AL I+++ D ++ + Y ND + D++ + L+R +A+ D IE+
Sbjct: 172 RHLKAL-GDSIIYVVRPVDKKKVLFY-NDKSLQFSVDEEFQKLWRSVAVEGIDDQKIEEY 229
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLN 281
LQK QGI+S KK ++++ K ++ + F+K N
Sbjct: 230 LQK------------------QGITSMQDMGVKKVNVAQKRKKPSSKRAKTFKKHN 267
>gi|365759631|gb|EHN01410.1| Tfa2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401837946|gb|EJT41782.1| TFA2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 328
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
Y+ + + V + L+ ++ +D K+ F Y S +D+ S+LL L+R F +GI+
Sbjct: 150 YLSMKKDDKVIELLKKLDRIEFDPKKGSFKYLSTYDVHSPSELLKLLRSQVTF-KGISCK 208
Query: 157 DLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIAL 215
DLKD +P E + L+ +I +L + D + N D++ ++ ++ L
Sbjct: 209 DLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYVWYNSGGNLKCIDEEFVKMWENVQL 268
Query: 216 PSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPE 275
P ++ + LQ G+KPA+ A I+ + + + KKK+ ++ K+TN H+
Sbjct: 269 PQ-FAELPRKLQDLGLKPASVD-----PATIKRQTKRVEIKKKRQ---RKGKVTNTHMTG 319
Query: 276 LFQ 278
+ +
Sbjct: 320 ILK 322
>gi|388326903|gb|AFK28361.1| putative transcription initiation factor, partial [Helianthus
niveus]
Length = 27
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 171 ALKAAGQIWLLSNFDSQEDIAYPNDPR 197
LKA QIWLLS +SQE+IAYPNDPR
Sbjct: 1 VLKAGRQIWLLSTINSQEEIAYPNDPR 27
>gi|607956|gb|AAA62664.1| transcription factor TFIIE, small subunit [Saccharomyces
cerevisiae]
Length = 328
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIAVI 156
Y+ + + V + L+ ++ +D K+ F Y S +D+ S+LL L+R F +GI+
Sbjct: 150 YLSMKKDDKVIELLKKLDRIEFDPKKGTFKYLSTYDVHSPSELLKLLRSQVTF-KGISCK 208
Query: 157 DLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIAL 215
DLKD +P E + L+ +I +L + D + N D++ ++ ++ L
Sbjct: 209 DLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYVWYNRGGNLKCIDEEFVKMWENVQL 268
Query: 216 PSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPE 275
P ++ + LQ G+KPA+ A I+ + + + KKK+ ++ K+TN H+
Sbjct: 269 PQ-FAELPRKLQDLGLKPASVD-----PATIKRQTKRVEVKKKRQ---RKGKITNTHMTG 319
Query: 276 LFQ 278
+ +
Sbjct: 320 ILK 322
>gi|290462651|gb|ADD24373.1| Transcription initiation factor IIE subunit beta [Lepeophtheirus
salmonis]
Length = 215
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 88/181 (48%), Gaps = 16/181 (8%)
Query: 108 NKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYP 163
N ++L+NNPK+ + +K+ +++ K L+ L++ K GI + DL +S P
Sbjct: 33 NWLFTEALKNNPKIEVKNGTYIFKAPYNVTSKKTLIKLLKHHDLKGLGGIFLEDLAESLP 92
Query: 164 TVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALP-SDMLDI 222
+ ++ L +I ++S ++ + + DP V I+ D++ + L+R +A+ +D I
Sbjct: 93 KCDKIIRNLLDDEKIVIISRSADRKKVVFLLDPSVDIQVDEEFRKLWRSVAVEGTDDAKI 152
Query: 223 EKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKL--TNAHLPELFQKL 280
+ L+K G++ + ++ P+ +K I ++ + N H+ ++ +
Sbjct: 153 AEYLEKQGIRSMADNGIKKVFTN---------PRMRKKAIKRKARAPKDNEHMKDILEDY 203
Query: 281 N 281
N
Sbjct: 204 N 204
>gi|189192757|ref|XP_001932717.1| general transcription factor spTFIIE beta subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187978281|gb|EDU44907.1| general transcription factor spTFIIE beta subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 263
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 126 KRFSYKSKHDLKDKSQL--LVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSN 183
+++ YK K D+++ +QL + +K G+ + DLKD + TV +D+ ++ ++ +
Sbjct: 112 EKYRYKPKLDIRNPAQLKGHLQTQKSAMGLQIKDLKDGWSTVADDITKMEEKNEVLVRRA 171
Query: 184 FDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAA 243
D + NDP + + D + + +P D ++ K L N K AA
Sbjct: 172 KDGVPKTVWGNDPSLMLPMDPAFAKTWHSVHVPEDSEELRKMLLAN---------KLTAA 222
Query: 244 AQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNG 282
Q + I + KKKK + K TN H+ + + +G
Sbjct: 223 TQAKVIVAAPSGKKKKGP-RRGGKQTNTHMIGILKDFSG 260
>gi|71005170|ref|XP_757251.1| hypothetical protein UM01104.1 [Ustilago maydis 521]
gi|46096830|gb|EAK82063.1| hypothetical protein UM01104.1 [Ustilago maydis 521]
Length = 256
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Query: 105 VNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVR-KF------------ 149
+N N +F R++ +V YD K + YK +DL+ + L+ L++ +F
Sbjct: 55 LNPNSGLFQRFRSHDRVTYDAKTDLYMYKPDYDLRTPADLVALLKERFLNPGGNGARNSS 114
Query: 150 PEGIAVIDLKDSYPTVMEDLQAL-----KAAGQIWLLSNFDSQEDIAYPNDPRVPIKA-- 202
G+ + +L++SYP + ++ L K ++ +L Q D A P++
Sbjct: 115 AAGMRLAELRESYPAARDAIEELGKVEPKEDREVLILR---GQRDGAIKQVFWNPLRGKD 171
Query: 203 ----DDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKK 258
DD+ K L+ ++ +P D++D+ K+L++ G+ +AAQ+ + K KK
Sbjct: 172 AKGVDDEFKELWHELKVP-DLVDLPKELEREGLSTTDMLDAPISAAQLAANAKNKKKKKG 230
Query: 259 KHEISKRTKLTNAHL 273
++R KL N HL
Sbjct: 231 TG--ARRFKLQNTHL 243
>gi|255728249|ref|XP_002549050.1| hypothetical protein CTRG_03347 [Candida tropicalis MYA-3404]
gi|240133366|gb|EER32922.1| hypothetical protein CTRG_03347 [Candida tropicalis MYA-3404]
Length = 288
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 100/220 (45%), Gaps = 16/220 (7%)
Query: 64 QHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHY 123
Q++ + S + Q+ ++ + E + E++ Y+ + + + L+ ++ Y
Sbjct: 74 QNLGEMTGSHLSTQLHLAVEYIKEHDKPIPVEKLQH--YLAFDIRQTLLPLLKEIDRIKY 131
Query: 124 DGKR--FSYKSKHDLKDKSQLLVLVRKFP--EGIAVIDLKDSYPTVMEDLQALKAAGQIW 179
D + Y S H+++ LL +R+ +G V +LKD +P + + L A +I
Sbjct: 132 DENKGTLEYVSLHNIRSADDLLEFLRRQTTFKGTFVKELKDGWPGCVAAIDELDAENKIL 191
Query: 180 LLSNF-DSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQ 238
+L N ++ + + N+ DD+ K L+ ++ LP D + + L G+KP
Sbjct: 192 VLRNKKENAPRLVWANNGGEMGYIDDEFKELWNEVKLP-DRDVLYQKLLDQGLKPT---- 246
Query: 239 KRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
A I + + K KK + ++R K+TN H+ + +
Sbjct: 247 ----GADPSLIKKQPQNKDKKQKKARRGKITNTHMKGILK 282
>gi|388326863|gb|AFK28341.1| putative transcription initiation factor, partial [Helianthus
deserticola]
gi|388326865|gb|AFK28342.1| putative transcription initiation factor, partial [Helianthus
deserticola]
gi|388326867|gb|AFK28343.1| putative transcription initiation factor, partial [Helianthus
deserticola]
gi|388326869|gb|AFK28344.1| putative transcription initiation factor, partial [Helianthus
anomalus]
gi|388326875|gb|AFK28347.1| putative transcription initiation factor, partial [Helianthus
petiolaris]
gi|388326881|gb|AFK28350.1| putative transcription initiation factor, partial [Helianthus
petiolaris]
gi|388326889|gb|AFK28354.1| putative transcription initiation factor, partial [Helianthus
neglectus]
gi|388326891|gb|AFK28355.1| putative transcription initiation factor, partial [Helianthus
neglectus]
gi|388326893|gb|AFK28356.1| putative transcription initiation factor, partial [Helianthus
exilis]
gi|388326895|gb|AFK28357.1| putative transcription initiation factor, partial [Helianthus
exilis]
gi|388326897|gb|AFK28358.1| putative transcription initiation factor, partial [Helianthus
bolanderi]
gi|388326899|gb|AFK28359.1| putative transcription initiation factor, partial [Helianthus
bolanderi]
Length = 27
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 21/27 (77%)
Query: 171 ALKAAGQIWLLSNFDSQEDIAYPNDPR 197
LKA QIWLLS SQE+IAYPNDPR
Sbjct: 1 VLKAGRQIWLLSTIKSQEEIAYPNDPR 27
>gi|300707611|ref|XP_002996006.1| hypothetical protein NCER_100965 [Nosema ceranae BRL01]
gi|239605262|gb|EEQ82335.1| hypothetical protein NCER_100965 [Nosema ceranae BRL01]
Length = 200
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 94/207 (45%), Gaps = 26/207 (12%)
Query: 74 VGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSK 133
+ + + ++ L + A + ++ +D+++N + +L NN K+ Y
Sbjct: 9 INSYLHEILTFLKSSANAISFTDLYSKLNIDIHSNTRLLKALENNDKILIKNNFIQYLYT 68
Query: 134 HDLKDKSQLLVLVRKFPEGIAVIDLKDS---YPTVMEDLQALKAAGQIWLLSNFDSQEDI 190
++++ K L+ + K EGI + L+D+ ++D LK I ++
Sbjct: 69 YNIQSKEDLINIFSKRKEGIELSKLRDNPIDISDFLDDFLILKDNDGI----------EV 118
Query: 191 AYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKP-ATNTQKRRAAAQIQGI 249
+ +D R+ KADDD+ L++ + +P D+ ++ G+K + T KR+A I
Sbjct: 119 VFYDDMRID-KADDDIVALWKSVRVPG-FQDLISEMSVAGIKTNISETVKRKA------I 170
Query: 250 SSKNKPKKKKHEISKRTKLTNAHLPEL 276
K K K+ + I K+TN H+ L
Sbjct: 171 IKKTKSKRYRRNI----KITNTHVKGL 193
>gi|397617198|gb|EJK64324.1| hypothetical protein THAOC_14951 [Thalassiosira oceanica]
Length = 559
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 104 DVNANKAVFDSLRNNPKVHYDG-----------KRFSYKSKHD-LKDKSQLLVLVRKFPE 151
D + AV L NPKV+ + FSY++K ++DK LL + +
Sbjct: 90 DGGVDSAVVKMLECNPKVNVEEVPDPENPSLAMNTFSYRAKFSTVRDKPTLLAQINRMKN 149
Query: 152 GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKL 208
G+ DL D+Y V DLQ+L AG++ L + +E + +P ++ D +KL
Sbjct: 150 GVRWADLSDAYDGVEVDLQSLMTAGEV-LAVGPEPKELVVFPRGESFLVELDGCVKL 205
>gi|388326885|gb|AFK28352.1| putative transcription initiation factor, partial [Helianthus
petiolaris]
Length = 27
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 21/27 (77%)
Query: 171 ALKAAGQIWLLSNFDSQEDIAYPNDPR 197
LKA QIWLLS SQE+IAYPNDPR
Sbjct: 1 VLKAGRQIWLLSTIASQEEIAYPNDPR 27
>gi|449673855|ref|XP_004208048.1| PREDICTED: general transcription factor IIE subunit 2-like [Hydra
magnipapillata]
Length = 293
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMED 168
+SL+NNPK+ + ++S+K K+ L+DK L+ L+ K + G+ + D+++ P E
Sbjct: 126 ESLKNNPKILFKDDKYSFKPKYALRDKKSLIRLLEKHDQSGLGGVLLDDVREGLPNADEI 185
Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDML-DIEKDLQ 227
++++ + +I ++ + ++ I + D + D++ + +R +A+ DIEK L
Sbjct: 186 VKSI--SDKIMFVTRSNDKKAILFYYDSSYAVHVDEENQKHWRSVAVEGLAEPDIEKYLS 243
Query: 228 KNGMKPATNT 237
G+ T
Sbjct: 244 NCGISTMTGV 253
>gi|429860263|gb|ELA35004.1| transcription initiation factor iie subunit beta [Colletotrichum
gloeosporioides Nara gc5]
Length = 297
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 10/146 (6%)
Query: 136 LKDKSQLL--VLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIA-Y 192
+KDK LL + +K EG V DLKD +P + L L+ +I ++ Q A +
Sbjct: 151 VKDKISLLRHLQSKKDAEGTNVKDLKDGWPDCDQALMELEREHKILIVKTKKEQHPRAIW 210
Query: 193 PNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSK 252
+D + DD+ K ++ + +PS DI K L G KPA+ + I+ + K
Sbjct: 211 LDDATLHHHVDDEFKRMWNAVEVPS-TDDIVKKLVSVGQKPASAD-----PSLIKKVDPK 264
Query: 253 NKPKKKKHEISKRTKLTNAHLPELFQ 278
N K+KK + + K TN H+ L +
Sbjct: 265 NN-KQKKRAVRRTGKTTNTHMEHLLK 289
>gi|388326879|gb|AFK28349.1| putative transcription initiation factor, partial [Helianthus
petiolaris]
Length = 27
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 171 ALKAAGQIWLLSNFDSQEDIAYPNDPR 197
LKA Q+WLLS SQE+IAYPNDPR
Sbjct: 1 VLKAGRQVWLLSTIKSQEEIAYPNDPR 27
>gi|388326839|gb|AFK28329.1| putative transcription initiation factor, partial [Helianthus
agrestis]
Length = 27
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 171 ALKAAGQIWLLSNFDSQEDIAYPNDPR 197
LKA QIWLLS +SQE+IAYPNDPR
Sbjct: 1 VLKAGRQIWLLSTGNSQEEIAYPNDPR 27
>gi|397643722|gb|EJK76039.1| hypothetical protein THAOC_02219 [Thalassiosira oceanica]
Length = 486
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 104 DVNANKAVFDSLRNNPKVHYDG-----------KRFSYKSKHD-LKDKSQLLVLVRKFPE 151
D + AV L NPKV+ + FSY++K ++DK LL + +
Sbjct: 90 DGGVDSAVVKMLECNPKVNVEEVPDPENPSLAMNTFSYRAKFSTVRDKPTLLAQINRMKN 149
Query: 152 GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKL 208
G+ DL D+Y V DLQ+L AG++ L + +E + +P ++ D +KL
Sbjct: 150 GVRWADLSDAYDGVEVDLQSLMTAGEV-LAVGPEPKELVVFPRGESFLVELDGCVKL 205
>gi|19074285|ref|NP_585791.1| TRANSCRIPTION INITIATION FACTOR TFIIE BETA SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|449329456|gb|AGE95728.1| transcription initiation factor tfIIe beta subunit [Encephalitozoon
cuniculi]
Length = 247
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 100/221 (45%), Gaps = 16/221 (7%)
Query: 59 DTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNN 118
D +R+ I+ + I VI L + + + EEI +D++ N + S++ N
Sbjct: 31 DRDRIDSIDRGVQRHTNTYIHAVISLLKQHDRPLSFEEIKDKTRIDLHNNYVLLQSIKRN 90
Query: 119 PKVHYDGKRFSYKSKHDLKDKSQLLVLVRKF--PEGIAVIDLKDSYPTVMEDLQALKAAG 176
P++ +K + ++ + +VR EG+ + L DS V+ ++ LK +
Sbjct: 91 PRIVATHSTLMFKPLYSIRSVEDMRKVVRGLGGEEGLEMSKLMDSPVNVVPFVEELKKSN 150
Query: 177 QIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATN 236
+I +L++ D E + + + P+ D +K L+ + + + D+ ++L G+K
Sbjct: 151 EIIILNDIDGSEVVFWNDTQESPV--DPQIKSLWNQVRITT-YHDLIRELNTAGLK---- 203
Query: 237 TQKRRAAAQIQGISSKNKPKKKKHEISKR-TKLTNAHLPEL 276
+++ + + K KK S+R ++TN H+ L
Sbjct: 204 ------TEKVENVKKRPTIKIKKDRRSRRKIRITNTHVKGL 238
>gi|388326841|gb|AFK28330.1| putative transcription initiation factor, partial [Helianthus
argophyllus]
gi|388326843|gb|AFK28331.1| putative transcription initiation factor, partial [Helianthus
argophyllus]
gi|388326845|gb|AFK28332.1| putative transcription initiation factor, partial [Helianthus
argophyllus]
gi|388326847|gb|AFK28333.1| putative transcription initiation factor, partial [Helianthus
annuus]
gi|388326851|gb|AFK28335.1| putative transcription initiation factor, partial [Helianthus
annuus]
gi|388326853|gb|AFK28336.1| putative transcription initiation factor, partial [Helianthus
annuus]
gi|388326855|gb|AFK28337.1| putative transcription initiation factor, partial [Helianthus
praecox]
gi|388326857|gb|AFK28338.1| putative transcription initiation factor, partial [Helianthus
paradoxus]
gi|388326859|gb|AFK28339.1| putative transcription initiation factor, partial [Helianthus
paradoxus]
gi|388326861|gb|AFK28340.1| putative transcription initiation factor, partial [Helianthus
paradoxus]
gi|388326883|gb|AFK28351.1| putative transcription initiation factor, partial [Helianthus
petiolaris]
Length = 27
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 22/27 (81%)
Query: 171 ALKAAGQIWLLSNFDSQEDIAYPNDPR 197
LKA QIWLLS D+Q++IAYPNDPR
Sbjct: 1 VLKAGRQIWLLSTIDAQKEIAYPNDPR 27
>gi|367040095|ref|XP_003650428.1| hypothetical protein THITE_2169599 [Thielavia terrestris NRRL 8126]
gi|346997689|gb|AEO64092.1| hypothetical protein THITE_2169599 [Thielavia terrestris NRRL 8126]
Length = 249
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 20/197 (10%)
Query: 87 ETRQAFTPEEINRDCYVDVNANKAVFD-SLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVL 145
E+ Q F E++ R+ ++ + + + + R+ VH + ++KDK+ LL
Sbjct: 61 ESEQEFFIEQMRRNPHIQWIPDPELSEQTWRSGTYVHR-------PTIPEVKDKTSLLAY 113
Query: 146 VRKFPE--GIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKA 202
++K + G++V DLKD +P + L+A ++ ++ + D + + +DP + +
Sbjct: 114 LQKKTDASGVSVKDLKDGWPDCEAAINELEAEHKLLVVRAKKDGAPRMVWLDDPSLFHEV 173
Query: 203 DDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEI 262
D LKL++ + +PS +I L KPA+ + +AA K +KKK
Sbjct: 174 DPQLKLMWARVEVPSPE-NIVGRLLAAQQKPASEDPRLKAA-------QAPKVEKKKKRA 225
Query: 263 SKRT-KLTNAHLPELFQ 278
+RT K TN H+ L +
Sbjct: 226 QRRTGKSTNVHMEHLLK 242
>gi|50302659|ref|XP_451265.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640396|emb|CAH02853.1| KLLA0A05951p [Kluyveromyces lactis]
Length = 286
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 13/184 (7%)
Query: 100 DCYVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRKFP--EGIAV 155
+ Y+ + + V L+ K +D KR Y S +D+ +LL L+R +GI+
Sbjct: 105 ESYLSLPKDNNVIPMLKGLQKFKFDPKRNTLQYVSIYDVHSAEELLQLLRSQATFKGISC 164
Query: 156 IDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIA 214
+LKD +P + + L+A +I +L + D+ + N + D++ ++
Sbjct: 165 KELKDGWPQCFDTIDELEAKNRILVLRTKKDNSPRFVWYNHAGPSRQIDEEFVTMWEACK 224
Query: 215 LPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLP 274
LP ++ + LQ G+KPA+ A I+ + K KK+ S++ K+TN H+
Sbjct: 225 LPQRS-ELPRKLQDLGLKPAS-----VDPATIKNEQTTRKEVKKRR--SRKGKVTNTHMA 276
Query: 275 ELFQ 278
+ +
Sbjct: 277 GILR 280
>gi|380486135|emb|CCF38902.1| transcription initiation factor IIE subunit beta [Colletotrichum
higginsianum]
Length = 296
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 11/146 (7%)
Query: 136 LKDKSQLL--VLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIA-Y 192
++DK LL + +K EG +V DLKD +P + L L+ +I ++ Q A +
Sbjct: 151 VRDKISLLRHLQSKKDAEGTSVKDLKDGWPDCDQSLMELEREHKILIVKTKKEQHPRAIW 210
Query: 193 PNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSK 252
+D + DD+ K ++ + +P+ DI K L G KPA+ + I+ I SK
Sbjct: 211 LDDASLHHHVDDEFKRMWNAVEVPT-TDDIVKKLVSVGQKPASAD-----PSTIKKIDSK 264
Query: 253 NKPKKKKHEISKRTKLTNAHLPELFQ 278
+ KK+ + + K TN H+ L +
Sbjct: 265 KQQKKR--AVRRTGKTTNTHMEHLLK 288
>gi|392512692|emb|CAD25395.2| TRANSCRIPTION INITIATION FACTOR TFIIE BETA SUBUNIT [Encephalitozoon
cuniculi GB-M1]
Length = 218
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 100/221 (45%), Gaps = 16/221 (7%)
Query: 59 DTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNN 118
D +R+ I+ + I VI L + + + EEI +D++ N + S++ N
Sbjct: 2 DRDRIDSIDRGVQRHTNTYIHAVISLLKQHDRPLSFEEIKDKTRIDLHNNYVLLQSIKRN 61
Query: 119 PKVHYDGKRFSYKSKHDLKDKSQLLVLVRKF--PEGIAVIDLKDSYPTVMEDLQALKAAG 176
P++ +K + ++ + +VR EG+ + L DS V+ ++ LK +
Sbjct: 62 PRIVATHSTLMFKPLYSIRSVEDMRKVVRGLGGEEGLEMSKLMDSPVNVVPFVEELKKSN 121
Query: 177 QIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATN 236
+I +L++ D E + + + P+ D +K L+ + + + D+ ++L G+K
Sbjct: 122 EIIILNDIDGSEVVFWNDTQESPV--DPQIKSLWNQVRITT-YHDLIRELNTAGLK---- 174
Query: 237 TQKRRAAAQIQGISSKNKPKKKKHEISKR-TKLTNAHLPEL 276
+++ + + K KK S+R ++TN H+ L
Sbjct: 175 ------TEKVENVKKRPTIKIKKDRRSRRKIRITNTHVKGL 209
>gi|440493391|gb|ELQ75868.1| Transcription initiation factor IIE, beta subunit
[Trachipleistophora hominis]
Length = 220
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 102/232 (43%), Gaps = 21/232 (9%)
Query: 47 AARSSPPVKFSNDTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVN 106
A+ P + R +HINS I +I + + T +EI + + +
Sbjct: 2 ASNKYAPFPSYKENNRARHINS--------YIHTIIQFIKNYDRPLTFDEIEKSTNLKLT 53
Query: 107 ANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQL--LVLVRKFPEGIAVIDLKDSYPT 164
NK + +L NPK+ +K ++++ + L +++ GI + L DS
Sbjct: 54 DNKRLLKTLTKNPKIVIGNNTLLFKPLYNIRSEKDLEDIMIATNAEYGIELEKLLDSPID 113
Query: 165 VMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEK 224
+ + LK I++L + D+ E I + N +P A+D + L+ I +P + D+ K
Sbjct: 114 IKPFVSNLKRKEVIFVLKDIDNSE-IVFYNKLYLP-PANDKIVELYNKIKIP-NYQDVLK 170
Query: 225 DLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPEL 276
+L G+K Q R ++ K K +K K +I ++TN H+ EL
Sbjct: 171 ELSSAGIKVERKAQDERRNIVVK----KTKIRKYKRKI----RITNTHVKEL 214
>gi|402220167|gb|EJU00239.1| hypothetical protein DACRYDRAFT_23212 [Dacryopinax sp. DJM-731 SS1]
Length = 337
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 110/233 (47%), Gaps = 29/233 (12%)
Query: 54 VKFSN--DTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAV 111
V FS DT HIN+ Q+ + L + E+++ + +++N +
Sbjct: 102 VVFSQPADTGTGSHINT--------QLVYAVRALKDHGNPIRLEDLSIQLGIPLDSNAEL 153
Query: 112 FDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLV-LVRKFPEG--IAVIDLKDSYPTVM 166
+D + +V +D K +SYK ++++K QLL + R + G ++V +++S+P+ +
Sbjct: 154 YDMFLQHDRVIHDTKTNTYSYKPDFNIRNKEQLLTEITRHYKRGGGMSVKVIRESWPSAI 213
Query: 167 EDLQALKAAGQIWLLSNF-DSQEDIAYPNDPRVPI-----KADDDLKLLFRDIALPSDML 220
++ L A G + + D+ I + N+ VP+ + D + + ++ +P + +
Sbjct: 214 PAIEELAARGDVIVTRTAKDNTPRIVFFNE--VPLEQGGGQIDKEFQEIWNSQKVPDEDI 271
Query: 221 DIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
I DLQ G + A+ + + I + K +K + ++R K+TN HL
Sbjct: 272 -IMSDLQSFGQQTASVEMTPKFSGGI-----RKKGRKGAAKPNRRIKITNTHL 318
>gi|330934860|ref|XP_003304742.1| hypothetical protein PTT_17391 [Pyrenophora teres f. teres 0-1]
gi|311318544|gb|EFQ87164.1| hypothetical protein PTT_17391 [Pyrenophora teres f. teres 0-1]
Length = 263
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 126 KRFSYKSKHDLKDKSQL--LVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSN 183
+++ YK K D+++ +QL + +K G+ + DLKD + TV +D+ ++ ++ +
Sbjct: 112 EKYRYKPKLDIRNPAQLKGHLQTQKSAMGLQIKDLKDGWSTVADDITKMEEKNEVLVRRA 171
Query: 184 FDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAA 243
D + NDP + + D + + +P D ++ K L N K AA
Sbjct: 172 KDGVPKTVWGNDPSLMLPMDPAFAKTWHSVHVPEDPEELRKLLLAN---------KLTAA 222
Query: 244 AQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQKLNG 282
Q + I + +KKK + K TN H+ + + +G
Sbjct: 223 TQAKVIVAAPSGRKKKGP-RRGGKQTNTHMIGILKDFSG 260
>gi|343426979|emb|CBQ70507.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 256
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 30/168 (17%)
Query: 105 VNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVR-KF------------ 149
+N N +F R++ +V YDGK + YK +DL+ + L+ L++ +F
Sbjct: 55 LNPNSGLFQRFRSHDRVTYDGKTDLWMYKPDYDLRTPADLVALLKERFLNPGGSGARNAS 114
Query: 150 PEGIAVIDLKDSYPTVMEDLQALKAAG-----QIWLLSNFDSQEDIAYPNDPRVPIKA-- 202
G+ + +L++SYP + ++ L ++ +L Q D A P++
Sbjct: 115 AAGMRLAELRESYPAARDAIEELSKVEPREDREVLVLRG---QRDGAIKQVFWNPLRGKD 171
Query: 203 ----DDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQI 246
DD+ K L+ ++ +P D++D+ K+L++ G+ +AAQ+
Sbjct: 172 AKGVDDEFKDLWHELKVP-DLVDLPKELEREGLSTTDMLDSPISAAQL 218
>gi|323304044|gb|EGA57823.1| Tfa2p [Saccharomyces cerevisiae FostersB]
Length = 176
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Query: 111 VFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK--FPEGIAVIDLKDSYPTVM 166
V + L+ ++ +D K+ F Y S +D+ S+LL L+R +GI+ DLKD +P
Sbjct: 7 VIELLKKLDRIEFDPKKGTFKYLSTYDVHSPSELLKLLRSQVTFKGISCKDLKDGWPQCD 66
Query: 167 EDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKD 225
E + L+ +I +L + D + N D++ ++ ++ LP ++ +
Sbjct: 67 ETINQLEEDSKILVLRTKKDKTPRYVWYNSGGNLKCIDEEFVKMWENVQLPQ-FAELPRK 125
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
LQ G+KPA+ A I+ + + + KKK+ ++ K+TN H+ + +
Sbjct: 126 LQDLGLKPASVD-----PATIKRQTKRVEVKKKRQ---RKGKITNTHMTGILK 170
>gi|302918138|ref|XP_003052594.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733534|gb|EEU46881.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 304
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 135 DLKDKSQLL--VLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIA 191
++KD + LL + + G++V DLKD +P + L L+ +I ++ + D+
Sbjct: 157 NVKDATSLLGHLQAKTDASGVSVKDLKDGWPDCEDTLAKLEQQHRILVVRTKKDNLPRYV 216
Query: 192 YPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISS 251
+PND + + + ++ + LPS + D+ + L G KP + + AAQ Q
Sbjct: 217 WPNDASLHHSVQPEFQAMWHRVPLPS-IDDMHRKLVSVGQKPTSEDPHK--AAQGQAAKP 273
Query: 252 KNKPKKKKHEISKRTKLTNAHL 273
K + ++ I K T + AHL
Sbjct: 274 KQQKRRAGKRIGKATNVHMAHL 295
>gi|310794771|gb|EFQ30232.1| transcription initiation factor IIE subunit beta [Glomerella
graminicola M1.001]
Length = 295
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 136 LKDKSQLL--VLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIA-Y 192
++DK LL + +K EG +V DLKD +P + L L+ +I ++ Q A +
Sbjct: 150 VRDKISLLRHLQSKKDAEGTSVKDLKDGWPDCDQALMELEREHKILIVKTKKEQHPRAIW 209
Query: 193 PNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSK 252
+D + + DD+ K ++ + +P+ DI K L G KPA+ + I+ + SK
Sbjct: 210 LDDASLHHQVDDEFKRMWNAVEVPT-TDDIVKKLVSVGQKPASAD-----PSTIKKVDSK 263
Query: 253 NKPKKKKHEISKRTKLTNAHLPELFQ 278
+ KK+ + + K TN H+ L +
Sbjct: 264 KQQKKR--AVRRTGKTTNTHMEHLLK 287
>gi|388326849|gb|AFK28334.1| putative transcription initiation factor, partial [Helianthus
annuus]
Length = 27
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 171 ALKAAGQIWLLSNFDSQEDIAYPNDPR 197
LKA QIWLLS D+Q+++AYPNDPR
Sbjct: 1 VLKAGRQIWLLSTIDAQKEMAYPNDPR 27
>gi|358344821|ref|XP_003636485.1| Alkaline alpha galactosidase I [Medicago truncatula]
gi|355502420|gb|AES83623.1| Alkaline alpha galactosidase I [Medicago truncatula]
Length = 224
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 22/27 (81%)
Query: 105 VNANKAVFDSLRNNPKVHYDGKRFSYK 131
+ ANK VF+SLR PKV YDG+RFSYK
Sbjct: 6 LEANKDVFESLRKKPKVEYDGQRFSYK 32
>gi|289741027|gb|ADD19261.1| transcription initiation factor IIE beta subunit [Glossina
morsitans morsitans]
Length = 291
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 113 DSLRNNPKVHY--DGKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVM 166
++L NNPK+ DG RF++K + +KD LL L++ K GI + D+++S P
Sbjct: 114 EALMNNPKIDVTPDGLRFTFKPVYKIKDGKSLLRLLKSHDLKGLGGILLDDVQESLPHCE 173
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IE 223
+ L+ +A+ I+++ D ++ + Y ND D++ + L+R + D +D I+
Sbjct: 174 KVLKN-RASEIIFIVRPIDKKKILFY-NDRTANFTVDEEFQKLWRSATV--DAMDDAKID 229
Query: 224 KDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
+ L+K G++ + ++ + + ++SK + KK + N HL ++ +
Sbjct: 230 EYLEKQGIRSMQDHGPKKPVPKRRKVASKKRQFKKPRD--------NEHLADVLE 276
>gi|344228439|gb|EGV60325.1| transcription initiation factor IIE, beta subunit [Candida tenuis
ATCC 10573]
Length = 285
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 85/177 (48%), Gaps = 14/177 (7%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRKFP--EGIAVID 157
Y+ + + + L+ ++ YD K F Y S H+++ LL +R P +GI V +
Sbjct: 107 YLSFDITQTLLPLLKEIDRLKYDHKSDTFEYVSLHNIRSSEDLLNFLRVQPTFKGIPVKE 166
Query: 158 LKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALP 216
LKD + ++ + L+A +I +L + ++ + + N D+D K ++ +P
Sbjct: 167 LKDGWANYLQSINELEAENKILVLRTKKENAPRLVWANFGGNLNTIDEDFKYMWTRAKIP 226
Query: 217 SDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+ D+ +DL G+KP A I K K ++KK + ++R K+TN H+
Sbjct: 227 NPD-DLYQDLVDQGLKPT--------GADPNIIKRKPKKEEKKQKKTRRGKITNTHM 274
>gi|340939044|gb|EGS19666.1| putative transcription initiation factor [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 663
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 20/182 (10%)
Query: 112 FDSLRNNPKVHY----DGKRFSYKSKH--------DLKDKSQLLVLVRKFPE--GIAVID 157
D +R NP++ + D ++KS +K K L+ ++K + G++V D
Sbjct: 480 VDQMRRNPQIQWIPDPDLSEQTWKSGTYVHRPIIPGVKSKDTLIAYLQKKQDASGVSVKD 539
Query: 158 LKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALP 216
LKD +P + + L+ ++ ++ + D + + +DP + + D +LKL++ + +P
Sbjct: 540 LKDGWPDCEQAIAELEREHKVLVVRAKKDGAARMVWLDDPSLFHEVDPELKLMWARVEVP 599
Query: 217 SDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPEL 276
S + I + L KPA+ + + AA + + KKKK + K TN H+ L
Sbjct: 600 S-VDTIVQRLLAAQQKPASEDPRLKQAAN----APTQQDKKKKRAQRRTGKATNTHMEHL 654
Query: 277 FQ 278
+
Sbjct: 655 LK 656
>gi|322797068|gb|EFZ19357.1| hypothetical protein SINV_01812 [Solenopsis invicta]
Length = 280
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 90/177 (50%), Gaps = 26/177 (14%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVMED 168
++L NPK+ RF +K + +KDK LL L++ K GI + D+++S P +
Sbjct: 115 EALVQNPKIEVTEGRFVFKPMYKIKDKKSLLRLLKQHDLKGLGGILLEDIQESLPHCDKH 174
Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IEKD 225
L++L+ ++++ D ++ I + ND D++ + L+R +A+ D +D I++
Sbjct: 175 LKSLQNEI-LYIIRPLDKKK-IVFYNDKTAQFPIDEEFQKLWRAVAV--DAMDDQKIDEY 230
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLT----NAHLPELFQ 278
L+K G++ + Q G+ K P K+K +++R + N HL ++ +
Sbjct: 231 LEKQGIR----------SMQDHGL-KKPAPIKRKKPVNRRKQFKKPRDNEHLADVLE 276
>gi|195375106|ref|XP_002046344.1| GJ12845 [Drosophila virilis]
gi|194153502|gb|EDW68686.1| GJ12845 [Drosophila virilis]
Length = 292
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 71/129 (55%), Gaps = 13/129 (10%)
Query: 113 DSLRNNPKVHY--DGKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVM 166
++L NNPK+ DG +FS+K + +KD L+ L++ K GI + D+++S P
Sbjct: 115 EALHNNPKIDVTPDGTKFSFKPVYKIKDGKSLMRLLKQHDLKGLGGILLEDVQESLPHCE 174
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IE 223
+ L+ +AA ++++ D ++ + Y ND DD+ + L+R + D +D I+
Sbjct: 175 KVLKN-RAAEILFIIRPIDKKKILFY-NDRTANFSVDDEFQKLWRSATV--DAMDDAKID 230
Query: 224 KDLQKNGMK 232
+ L+K G++
Sbjct: 231 EYLEKQGIR 239
>gi|401826580|ref|XP_003887383.1| transcription initiation factor IIE subunit beta [Encephalitozoon
hellem ATCC 50504]
gi|395459901|gb|AFM98402.1| transcription initiation factor IIE subunit beta [Encephalitozoon
hellem ATCC 50504]
Length = 218
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 86/183 (46%), Gaps = 10/183 (5%)
Query: 65 HINSI-RKSP--VGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKV 121
HI+SI R P I VI L + + T EEI +D++ N + S++ NP++
Sbjct: 5 HIDSIDRGIPRHTNTYIHSVISLLKQYDRPLTFEEIKDKTRIDLHNNYMLLQSIKKNPRI 64
Query: 122 HYDGKRFSYKSKHDLKDKSQLLVLVRKF--PEGIAVIDLKDSYPTVMEDLQALKAAGQIW 179
+K + ++ L ++R+ EG+ + L DS + ++ L+ G+I
Sbjct: 65 VATHSTLMFKPLYSIRGVEDLRKVMREINGEEGLEMSKLMDSPVNIAPFVEELRRNGEII 124
Query: 180 LLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMK--PATNT 237
+L++ D E + + + P+ D +K L+ + + S D+ ++L G+K N
Sbjct: 125 VLNDIDGSEVVFWNDMHEKPV--DPQIKSLWSQVRI-STYHDLIRELNTAGLKIEKVENV 181
Query: 238 QKR 240
+KR
Sbjct: 182 KKR 184
>gi|116202543|ref|XP_001227083.1| hypothetical protein CHGG_09156 [Chaetomium globosum CBS 148.51]
gi|88177674|gb|EAQ85142.1| hypothetical protein CHGG_09156 [Chaetomium globosum CBS 148.51]
Length = 406
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 113 DSLRNNPKVHY------------DGKRFSYKSKHDLKDKSQLLVLVRKFPE--GIAVIDL 158
D +R +P++ + G + D++ K+QLL ++K + G++V DL
Sbjct: 226 DQMRRHPQIQWIPDPALSEQTWRSGTYVHRPAIPDVRTKTQLLAYLQKKTDASGVSVKDL 285
Query: 159 KDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS 217
KD +P + L++ ++ ++ + D + + +D + + + LKLL+ + LPS
Sbjct: 286 KDGWPECEAAITELESEHKVLVVRAKKDGAAKMVWLDDSSLFHEVEPQLKLLWARVELPS 345
Query: 218 DMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELF 277
+ +I L KPA+ + +A+ + + KKKK K K TN H+ L
Sbjct: 346 -IENIVPKLVAAQQKPASEDPRIKAS------QAPKQDKKKKRVQRKSGKSTNTHMEHLL 398
Query: 278 Q 278
+
Sbjct: 399 K 399
>gi|396081505|gb|AFN83121.1| transcription initiation factor TFIIE subunit beta [Encephalitozoon
romaleae SJ-2008]
Length = 270
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 91/202 (45%), Gaps = 16/202 (7%)
Query: 78 IKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSKHDLK 137
I VI L + + T EEI +D++ N + S++ NP++ +K + ++
Sbjct: 73 IHAVISLLKQHDRPVTFEEIKDKTRIDLHNNYMLLQSIKKNPRIVATHSTLMFKPLYSIR 132
Query: 138 DKSQLLVLVRKF--PEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPND 195
L ++++ EG+ + L DS + ++ LK +I +LS+ D E + + +
Sbjct: 133 GVEDLRKVMKEINGEEGLEMSKLMDSPVNITPFVEELKRNDEIIVLSDIDGSEIVFWNDM 192
Query: 196 PRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPA-TNTQKRRAAAQIQGISSKNK 254
PI D +K L+ + + S D+ ++L G+K K+R +I
Sbjct: 193 HEKPI--DPQIKSLWSQVRI-STYHDLIRELNTAGLKTEKVENIKKRPTIKI-------- 241
Query: 255 PKKKKHEISKRTKLTNAHLPEL 276
KK + +R ++TN H+ L
Sbjct: 242 --KKDRKSRRRIRITNTHVKGL 261
>gi|45185930|ref|NP_983646.1| ACR244Cp [Ashbya gossypii ATCC 10895]
gi|44981720|gb|AAS51470.1| ACR244Cp [Ashbya gossypii ATCC 10895]
Length = 300
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 17/186 (9%)
Query: 100 DCYVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIA 154
+ Y+ + + +V L+ K +D K+ Y S +D+ +LL L R F +GI+
Sbjct: 119 ESYLSLPKDNSVIPMLKGLAKFKFDPKKNTLQYVSIYDVHSAEELLKLTRTQVTF-KGIS 177
Query: 155 VIDLKDSYPTVMEDLQALKAAGQIWLLSNF--DSQEDIAYPNDPRVPIKADDDLKLLFRD 212
+LKD +P E + L+ +I L+S D+ + N + D+D ++ +
Sbjct: 178 CKELKDGWPQCFEVIDELEKKNRI-LVSRTKKDNSPRFVWYNFGGPLGEIDEDFVKMWEN 236
Query: 213 IALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAH 272
LP ++ + LQ G+KPA+ A + QG S++ + KK+K ++ K+TN H
Sbjct: 237 CKLPQRS-ELPRKLQDLGLKPASVDP---ATIKKQG-STRVEAKKRKQ---RKGKITNTH 288
Query: 273 LPELFQ 278
+ + +
Sbjct: 289 MAGILK 294
>gi|429966187|gb|ELA48184.1| hypothetical protein VCUG_00422 [Vavraia culicis 'floridensis']
Length = 220
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 13/197 (6%)
Query: 47 AARSSPPVKFSNDTERLQHINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVN 106
A+ P + R +HINS I +I + + T +EI ++ + +
Sbjct: 2 ASNRYSPFPSYKENSRARHINS--------YIHTIIQFIKNYDRPLTFDEIEKNTNLKLT 53
Query: 107 ANKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQL--LVLVRKFPEGIAVIDLKDSYPT 164
NK + +L NPK+ +K ++++++ L +++ GI + L DS
Sbjct: 54 DNKKLLKTLTKNPKIVIGDNTLLFKPLYNIRNEKDLENIMVATNCEYGIELEKLLDSPID 113
Query: 165 VMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEK 224
+ +Q L+ I++L + D+ E I + N +P A+D + L+ I +P + D+ K
Sbjct: 114 IKPFVQNLQKKAVIFVLKDIDNSE-IVFYNKLYLP-PANDKIVELYNKIKIP-NYQDVLK 170
Query: 225 DLQKNGMKPATNTQKRR 241
+L G+K Q+ R
Sbjct: 171 ELSSAGIKVERKAQEER 187
>gi|374106852|gb|AEY95761.1| FACR244Cp [Ashbya gossypii FDAG1]
Length = 300
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 17/186 (9%)
Query: 100 DCYVDVNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK---FPEGIA 154
+ Y+ + + +V L+ K +D K+ Y S +D+ +LL L R F +GI+
Sbjct: 119 ESYLSLPKDNSVIPMLKGLAKFKFDPKKNTLQYVSIYDVHSAEELLKLTRTQVTF-KGIS 177
Query: 155 VIDLKDSYPTVMEDLQALKAAGQIWLLSNF--DSQEDIAYPNDPRVPIKADDDLKLLFRD 212
+LKD +P E + L+ +I L+S D+ + N + D+D ++ +
Sbjct: 178 CKELKDGWPQCFEVIDELEKKNRI-LVSRTKKDNSPRFVWYNFGGPLGEIDEDFVKMWEN 236
Query: 213 IALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAH 272
LP ++ + LQ G+KPA+ A + QG S++ + KK+K ++ K+TN H
Sbjct: 237 CKLPQRS-ELPRKLQDLGLKPASVDP---ATIKKQG-STRVEAKKRKQ---RKGKITNTH 288
Query: 273 LPELFQ 278
+ + +
Sbjct: 289 MAGILK 294
>gi|307208277|gb|EFN85709.1| General transcription factor IIE subunit 2 [Harpegnathos saltator]
Length = 281
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 90/178 (50%), Gaps = 27/178 (15%)
Query: 113 DSLRNNPKVHYD-GKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVME 167
++L NPK+ RF +K+ + +KDK LL L++ K GI + D+++S P +
Sbjct: 115 EALVKNPKIDVTTDSRFVFKAMYKIKDKKSLLRLLKQHDLKGLGGILLEDIQESLPHCEK 174
Query: 168 DLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IEK 224
L+AL+ +I ++ ++ I + ND D++ + L+R +A+ D +D I++
Sbjct: 175 HLKALQ--NEILFITRPLDKKKIVFYNDKTAQFPIDEEFQKLWRAVAV--DAMDDQKIDE 230
Query: 225 DLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLT----NAHLPELFQ 278
L+K G++ + Q G+ K P K+K +++R + N HL ++ +
Sbjct: 231 YLEKQGIR----------SMQDHGL-KKPAPLKRKKPVNRRKQFKKPRDNEHLADVLE 277
>gi|443895326|dbj|GAC72672.1| hypothetical protein PANT_7d00220 [Pseudozyma antarctica T-34]
Length = 254
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 31/194 (15%)
Query: 105 VNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVR------------KFP 150
+N N +F + + +V YD K + YK +DL+ + L+ L++
Sbjct: 54 LNPNSGLFARFKVHDRVMYDAKTDLWMYKPDYDLRTPADLVALLKDRYLNPGNGAGNSSA 113
Query: 151 EGIAVIDLKDSYPTVMEDLQALKAAG-----QIWLLSNFDSQEDIAYPNDPRVPIKA--- 202
G+ + +L++SYP + ++ L A ++ +L Q D A P++
Sbjct: 114 AGMRLAELRESYPAARDAIEELSKAEPREDREVLVLR---GQRDGAIKQVFWNPLRGKEA 170
Query: 203 ---DDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKK 259
DD+ K L+ ++ +P D++D+ K+L++ G+ +AAQ+ + K KK
Sbjct: 171 KGVDDEFKELWHELKVP-DLVDLPKELEREGLTTTDMLDAPVSAAQLAANAKNKKKKKGS 229
Query: 260 HEISKRTKLTNAHL 273
+R KL N HL
Sbjct: 230 G--PRRFKLQNTHL 241
>gi|332021782|gb|EGI62128.1| General transcription factor IIE subunit 2 [Acromyrmex echinatior]
Length = 280
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 88/177 (49%), Gaps = 26/177 (14%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVMED 168
++L NPK+ RF +K + +KDK LL L++ K GI + D+++S P +
Sbjct: 115 EALIQNPKIEVTDGRFVFKPMYKIKDKKSLLRLLKQHDLKGLGGILLEDIQESLPHCDKH 174
Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IEKD 225
L+ L+ +I ++ ++ I + ND D++ + L+R +A+ D +D I++
Sbjct: 175 LKNLQ--NEILYITRPLDKKKIIFYNDKTAQFPIDEEFQKLWRAVAV--DAMDDQKIDEY 230
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLT----NAHLPELFQ 278
L+K G++ + Q G+ K P K+K +++R + N HL ++ +
Sbjct: 231 LEKQGIR----------SMQDHGL-KKPAPIKRKKPVNRRKQFKKPRDNEHLADVLE 276
>gi|164658449|ref|XP_001730350.1| hypothetical protein MGL_2732 [Malassezia globosa CBS 7966]
gi|159104245|gb|EDP43136.1| hypothetical protein MGL_2732 [Malassezia globosa CBS 7966]
Length = 203
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 39/193 (20%)
Query: 111 VFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK------------FPEGIAVI 156
+F + +PKV YD K +SYK +++ ++ L+RK G+ V
Sbjct: 5 LFQRFKQHPKVRYDEKTDLWSYKPDYEVHSAGDIVSLLRKKYYHPFALTSESSAAGMRVA 64
Query: 157 DLKDSYPTVMEDLQAL----------------KAAGQIWLLSNFDSQEDIAYPNDPRVPI 200
+L++SYP E ++ L K G I + Q D+ P
Sbjct: 65 ELRESYPPAREAIEELANEKPVEKRQVLVLRGKRDGSIKHVFWNPIQGDLVKP------- 117
Query: 201 KADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKH 260
DD+ K L+ + +P +++D+ DL+ G+ + A +++ K K+
Sbjct: 118 -IDDEFKELWHSLNVP-NVVDLATDLENEGLSATKLIETAPKATSHSTTAAQRGKKGKRG 175
Query: 261 EISKRTKLTNAHL 273
++ KL N HL
Sbjct: 176 TAPRKFKLQNTHL 188
>gi|452984173|gb|EME83930.1| hypothetical protein MYCFIDRAFT_120912, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 252
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 15/151 (9%)
Query: 128 FSYKSKHDLKDKSQLLVLVRK--FPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNF- 184
F Y+ KH + + +L + K +GI V +LKD +P + L+ Q +LL+
Sbjct: 104 FRYRPKHPVTNAEELKDYLAKQTTAQGIPVRELKDGWPDCGPAIDELER--QHFLLATRR 161
Query: 185 --DSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRA 242
D+ ++ + + P D K + LP+ +I DL+K G+ P +
Sbjct: 162 KKDNSANMIWQDSPSYHTHISGDFKEFWSKTKLPATETEIRTDLEKAGITPTS------V 215
Query: 243 AAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
+++ ++ K K +KK + +T TN H+
Sbjct: 216 VKEVRNVNMKKKDRKKPNRRGGKT--TNVHM 244
>gi|430814678|emb|CCJ28123.1| unnamed protein product [Pneumocystis jirovecii]
Length = 216
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Query: 112 FDSLRNNPKVHYDGKR--FSYKSKHDLK--DKSQLLVLVRKFPEGIAVIDLKDSYPTVME 167
D LR N ++ YD + + +K H+++ + + GI V DLK+ + M+
Sbjct: 8 IDRLRTNERIEYDPYKDTYYFKPIHNIRSAESLVSFLSSSVTAVGIMVKDLKEGWSGAMD 67
Query: 168 DLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDL 226
+++ L+ GQI +L + D +PN D + K ++ + +P+ D+ ++L
Sbjct: 68 EIERLEKDGQILVLRTKKDGLPKSVWPNYSEDQESVDKEFKEIWNSLTIPAPS-DLPREL 126
Query: 227 QKNGMKPAT 235
+K G+KP +
Sbjct: 127 EKVGLKPTS 135
>gi|195135453|ref|XP_002012147.1| GI16593 [Drosophila mojavensis]
gi|193918411|gb|EDW17278.1| GI16593 [Drosophila mojavensis]
Length = 292
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 72/134 (53%), Gaps = 13/134 (9%)
Query: 108 NKAVFDSLRNNPKVHY--DGKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDS 161
N ++L NNPK+ DG +FS+K + +KD L+ L++ K GI + D+++S
Sbjct: 110 NWLAGEALNNNPKIEVTPDGTKFSFKPVYKIKDGKSLMRLLKQHDLKGLGGILLEDVQES 169
Query: 162 YPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD 221
P + L+ +AA ++++ D ++ + Y ND D++ + L+R + D +D
Sbjct: 170 LPHCEKVLKN-RAAEILFIIRPIDKKKILFY-NDRTANFSVDEEFQKLWRSATV--DAMD 225
Query: 222 ---IEKDLQKNGMK 232
I++ L+K G++
Sbjct: 226 DAKIDEYLEKQGIR 239
>gi|241949747|ref|XP_002417596.1| CaTFA2; ScTFA2; transcription factor a small subunit, putative;
transcription initiation factor IIE beta subunit,
putative [Candida dubliniensis CD36]
gi|223640934|emb|CAX45251.1| CaTFA2; ScTFA2 [Candida dubliniensis CD36]
Length = 289
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 104/220 (47%), Gaps = 18/220 (8%)
Query: 65 HINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD 124
++ + S + Q+ ++ + E Q + E++ Y+ + + + L +V YD
Sbjct: 76 NMGEMTGSHLSTQLHLAVEYIKEHDQPISVEKLQN--YLSFDISHTLLPLLNEIDRVKYD 133
Query: 125 GKR--FSYKSKHDLKDKSQLLVLVRKFP--EGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
+ Y S H+++ LL +R+ +G +V +LKD + + + L++ G+I +
Sbjct: 134 ESKGTLEYVSLHNIRSSDDLLEFLRRQTTFKGTSVKELKDGWTGCIIAIDELESQGKILV 193
Query: 181 LSNF-DSQEDIAYPNDPRVPIKADDDLKLLFRDIALP-SDMLDIEKDLQKNGMKPATNTQ 238
L N ++ + + N+ D++ K+++ + LP SD+L + L G+KP
Sbjct: 194 LRNKKENAPRLVWANNGGELGYIDNEFKIMWDQVKLPESDIL--YQKLLDQGLKPT---- 247
Query: 239 KRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
A I + + K+KK + ++R K+TN H+ + +
Sbjct: 248 ----GADPNLIKKQPQQKEKKQKKARRGKITNTHMKGILK 283
>gi|367029607|ref|XP_003664087.1| hypothetical protein MYCTH_2306496 [Myceliophthora thermophila ATCC
42464]
gi|347011357|gb|AEO58842.1| hypothetical protein MYCTH_2306496 [Myceliophthora thermophila ATCC
42464]
Length = 302
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 135 DLKDKSQLLVLVRKFPE--GIAVIDLKDSYPTVMEDLQALKAAGQIWLL-SNFDSQEDIA 191
++K K+QLL ++K + G++V DLKD +P + L+A ++ ++ + D +
Sbjct: 156 NVKSKTQLLAYLQKKTDASGVSVKDLKDGWPDCEAAINELEAEHKLLVVRAKKDGAARMV 215
Query: 192 YPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT 235
+ +DP + + D LKLL+ + LPS + +I + L KPA+
Sbjct: 216 WLDDPSLFHEVDPQLKLLWSRVELPS-VENIVQKLLAAQQKPAS 258
>gi|307184669|gb|EFN70998.1| General transcription factor IIE subunit 2 [Camponotus floridanus]
Length = 286
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 90/178 (50%), Gaps = 27/178 (15%)
Query: 113 DSLRNNPKVHYDG-KRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVME 167
++L NPK+ RF++K + +KDK LL L++ K GI + D+++S P +
Sbjct: 121 EALLKNPKIEVTSDSRFAFKPMYKIKDKKSLLRLLKQHDLKGLGGILLEDIQESLPHCDK 180
Query: 168 DLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IEK 224
L++L+ +I ++ ++ I + ND D++ + L+R +A+ D +D I++
Sbjct: 181 HLKSLQ--NEILYITRPLDKKKIVFYNDKTAQFPIDEEFQKLWRAVAV--DAMDDQKIDE 236
Query: 225 DLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLT----NAHLPELFQ 278
L+K G++ + Q G+ K P K+K +++R + N HL ++ +
Sbjct: 237 YLEKQGIR----------SMQDHGL-KKPAPIKRKKPVNRRKQFKKPRDNEHLADVLE 283
>gi|170111386|ref|XP_001886897.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638255|gb|EDR02534.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 491
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 100/213 (46%), Gaps = 21/213 (9%)
Query: 74 VGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKR--FSYK 131
V Q+ ++D L T E++ V+ + + + L+++ +V D K FSYK
Sbjct: 273 VNTQLVYLVDYLRGTPNPLRVEDLAIYTQTPVDVDMVLREKLKSHDRVQVDPKTGLFSYK 332
Query: 132 SKHDLKDKSQLLVLVRKFP---EGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNF-DSQ 187
+++ ++K+ LLV +++ GI+V LK+S+ ++ L+ G++ + D Q
Sbjct: 333 HEYNFRNKAALLVEIQRQTRKGSGISVRALKESWKEAPAAVEELEKEGEVLVTRTVKDGQ 392
Query: 188 EDIAY-----PNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRA 242
+ + P + ++ + + L+ ++ +P+ D+ K L G++ A
Sbjct: 393 LRMVFWNEIKPTEEAGGMQVEKEFLDLWHELKVPTGA-DLSKQLAHEGLQVT-------A 444
Query: 243 AAQI--QGISSKNKPKKKKHEISKRTKLTNAHL 273
A I + ++K K K+ ++ ++TN HL
Sbjct: 445 AEAIAPKAPNTKKKGKRGGAPRQRQARITNTHL 477
>gi|195491720|ref|XP_002093684.1| GE21436 [Drosophila yakuba]
gi|194179785|gb|EDW93396.1| GE21436 [Drosophila yakuba]
Length = 292
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 113 DSLRNNPKVHYD--GKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVM 166
++L NNPKV G +FS+K + +KD L+ L++ K GI + D+++S P
Sbjct: 115 EALHNNPKVEASPCGTKFSFKPVYKIKDGKTLMRLLKQHDLKGLGGILLDDVQESLPHCE 174
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IE 223
+ L+ +AA ++++ D ++ + Y ND DD+ + L+R + D +D I+
Sbjct: 175 KVLKN-RAAEILFIIRPIDKKKILFY-NDRTANFSVDDEFQKLWRSATV--DAMDDAKID 230
Query: 224 KDLQKNGMK 232
+ L+K G++
Sbjct: 231 EYLEKQGIR 239
>gi|125977132|ref|XP_001352599.1| GA11796 [Drosophila pseudoobscura pseudoobscura]
gi|54641347|gb|EAL30097.1| GA11796 [Drosophila pseudoobscura pseudoobscura]
Length = 292
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 113 DSLRNNPKVHYD--GKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVM 166
++L NNPK+ G +FS+K + +KD L+ L++ K GI + D+++S P
Sbjct: 115 EALNNNPKIEVSPCGTKFSFKPVYKIKDGKTLMRLLKQHDLKGLGGILMEDVQESLPHCE 174
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IE 223
+ L+ +AA ++++ D ++ + Y ND DD+ + L+R + D +D I+
Sbjct: 175 KVLKN-RAAEILFIIRPIDKKKILFY-NDRTANFSVDDEFQKLWRSATV--DAMDDAKID 230
Query: 224 KDLQKNGMK 232
+ L+K G++
Sbjct: 231 EYLEKQGIR 239
>gi|321477662|gb|EFX88620.1| hypothetical protein DAPPUDRAFT_206273 [Daphnia pulex]
Length = 280
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 21/176 (11%)
Query: 113 DSLRNNPKVHY--DGKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVM 166
++L +NPK+ DG R+ +K + ++D+ LL L+R K GI + D+++S P
Sbjct: 115 EALGSNPKIDVTSDG-RYMFKPPYRIRDRKGLLKLLRQTDLKGFGGILLDDIQESLPNHE 173
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IE 223
+ L+ L+ I ++ ++ I + ND + DD+ + L+R +A+ D +D IE
Sbjct: 174 KVLKVLEK--DIVYITRPIDKKKILFYNDKTAHMPIDDEFQKLWRSVAV--DGIDDNKIE 229
Query: 224 KDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQK 279
+ L+K G++ +T + ++++ K PKK+ + + N HL E+ ++
Sbjct: 230 EYLEKQGIRSMQDTSLKVMPSKLK---RKAAPKKRTFKKPR----DNEHLKEILEE 278
>gi|213514012|ref|NP_001133195.1| general transcription factor IIE, polypeptide 2-1 [Salmo salar]
gi|197632437|gb|ACH70942.1| general transcription factor IIE, polypeptide 2-1 [Salmo salar]
Length = 288
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 22/174 (12%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPEGIAVI----DLKDSYPTVMED 168
++L +NPK+ ++++K K+ LKDK LL L+ K + D+++ P +
Sbjct: 119 EALASNPKIEVRDGKYAFKPKYHLKDKKALLRLLDKHDQLGLGGLLLDDVEEGLPNSAKA 178
Query: 169 LQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQK 228
L+ L QI ++ D ++ I + ND D++ L+R I P D +D EK
Sbjct: 179 LKVL--GDQIIFVTRPDKKK-ILFYNDKHCQFTVDEEFTKLWRSI--PVDSMDEEK---- 229
Query: 229 NGMKPATNTQKRRAAAQIQGISSKN----KPKKKKHEISKRTKLTNAHLPELFQ 278
+ KR+ + +Q K K KK + +R K N HL + +
Sbjct: 230 -----IEDYLKRQGISSMQETGPKKVLPIKRKKPGGQKKRRFKTHNDHLAGVLE 278
>gi|195168107|ref|XP_002024873.1| GL17873 [Drosophila persimilis]
gi|194108303|gb|EDW30346.1| GL17873 [Drosophila persimilis]
Length = 292
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 113 DSLRNNPKVHYD--GKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVM 166
++L NNPK+ G +FS+K + +KD L+ L++ K GI + D+++S P
Sbjct: 115 EALNNNPKIEVSPCGTKFSFKPVYKIKDGKTLMRLLKQHDLKGLGGILMEDVQESLPHCE 174
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IE 223
+ L+ +AA ++++ D ++ + Y ND DD+ + L+R + D +D I+
Sbjct: 175 KVLKN-RAAEILFIIRPIDKKKILFY-NDRTANFSVDDEFQKLWRSATV--DAMDDAKID 230
Query: 224 KDLQKNGMK 232
+ L+K G++
Sbjct: 231 EYLEKQGIR 239
>gi|195012197|ref|XP_001983523.1| GH15942 [Drosophila grimshawi]
gi|193897005|gb|EDV95871.1| GH15942 [Drosophila grimshawi]
Length = 292
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 113 DSLRNNPKVHYD--GKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVM 166
++L NNPK+ G +FS+K + +KD L+ L++ K GI + D+++S P
Sbjct: 115 EALNNNPKIECTPCGTKFSFKPVYKIKDGKSLMRLLKQHDLKGLGGILMEDVQESLPHCE 174
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IE 223
+ L+ +AA ++++ D ++ + Y ND DD+ + L+R + D +D I+
Sbjct: 175 KVLKN-RAAEILFIIRPIDKKKILFY-NDRTANFAVDDEFQKLWRSATV--DAMDDAKID 230
Query: 224 KDLQKNGMK 232
+ L+K G++
Sbjct: 231 EYLEKQGIR 239
>gi|388851678|emb|CCF54674.1| uncharacterized protein [Ustilago hordei]
Length = 255
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 75/152 (49%), Gaps = 29/152 (19%)
Query: 105 VNANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRK------------FP 150
+N N +F +++ +V YD K + YK +DL+ + L+ L+++
Sbjct: 55 LNPNSGLFQRFKSHDRVMYDTKTDLWMYKPDYDLRTPADLVALLKERYLNPGNGARNSSA 114
Query: 151 EGIAVIDLKDSYPTVMEDLQAL-----KAAGQIWLLSNFDSQEDIAYPNDPRVPIKA--- 202
G+ + +L++SYP + ++ L K ++ +L Q+D A P++
Sbjct: 115 AGMRLAELRESYPAARDAIEELSKVEPKEDREVLVLR---GQKDGAIKQVFWNPLRGKEA 171
Query: 203 ---DDDLKLLFRDIALPSDMLDIEKDLQKNGM 231
DD+ K L+ ++ +P D++D+ K+L++ G+
Sbjct: 172 KGVDDEFKELWHELKVP-DLVDLPKELEREGL 202
>gi|195454715|ref|XP_002074368.1| GK10558 [Drosophila willistoni]
gi|194170453|gb|EDW85354.1| GK10558 [Drosophila willistoni]
Length = 292
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 72/134 (53%), Gaps = 13/134 (9%)
Query: 108 NKAVFDSLRNNPKVHYD--GKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDS 161
N ++L NNPK+ G++FS+K + +KD L+ L++ K GI + D+++S
Sbjct: 110 NWLAGEALSNNPKIEVSSCGQKFSFKPVYKIKDGKTLMRLLKQHDLKGLGGILLEDVQES 169
Query: 162 YPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD 221
P + L+ +AA ++++ D ++ + Y ND DD+ + L+R + D +D
Sbjct: 170 LPHCDKVLKN-RAAEILFIIRPIDKKKILFY-NDRTANFLVDDEFQKLWRSATV--DAMD 225
Query: 222 ---IEKDLQKNGMK 232
I++ L+K G++
Sbjct: 226 DAKIDEYLEKQGIR 239
>gi|194747415|ref|XP_001956147.1| GF25060 [Drosophila ananassae]
gi|190623429|gb|EDV38953.1| GF25060 [Drosophila ananassae]
Length = 292
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 113 DSLRNNPKVHYD--GKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVM 166
++L NNPK+ G +FS+K + +KD L+ L++ K G+ + D+++S P
Sbjct: 115 EALNNNPKIDVSPCGSKFSFKPVYKIKDGKSLMRLLKQHDLKGLGGVLLEDVQESLPHCE 174
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IE 223
+ L+ +AA ++++ D ++ + Y ND D+D + L+R + D +D I+
Sbjct: 175 KVLKN-RAAEILFIIRPIDKKKILFY-NDRTANFSVDEDFQKLWRSATV--DAMDDAKID 230
Query: 224 KDLQKNGMK 232
+ L+K G++
Sbjct: 231 EYLEKQGIR 239
>gi|385304451|gb|EIF48469.1| tfiie small involved in rna polymerase ii transcription initiation
[Dekkera bruxellensis AWRI1499]
Length = 291
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 102 YVDVNANKAVFDSLRNNPKVHYD--GKRFSYKSKHDLKDKSQLLVLVRKFP--EGIAVID 157
+++V + + L N ++ YD Y S H++K L+ ++ P +G++V
Sbjct: 109 HMNVPVDAQLLKCLSNVDRIKYDPMNXTLEYLSLHNIKTAEDLMKVLENQPTFQGLSVKQ 168
Query: 158 LKDSYPTVMEDLQALK--------------AAGQIWLLSNFDSQEDIAYPNDPRVPIKAD 203
L+D + + + L+ A IWL NF++ +V + D
Sbjct: 169 LRDGWNGCLPTIAKLEKENKIIVHKTKKXNAPRHIWL--NFENL---------KVGNRVD 217
Query: 204 DDLKLLFRDIALPSDMLDIEKDLQKNGMKPAT---NTQKRRAAAQIQGISSKNKPKKKKH 260
+ ++ +A+P D+ K L NGMKP + + + A IQ ++K
Sbjct: 218 KEFYDMWEKVAVPKGP-DLVKTLLSNGMKPTNVDPESLRNKKDAPIQ---------RRKQ 267
Query: 261 EISKRTKLTNAHLPELFQKLNG 282
+ +R K+TN H+ + + +G
Sbjct: 268 KKPRRGKITNIHMRGILKDYSG 289
>gi|358394911|gb|EHK44304.1| hypothetical protein TRIATDRAFT_223534 [Trichoderma atroviride IMI
206040]
Length = 300
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 132/302 (43%), Gaps = 48/302 (15%)
Query: 19 ETLSNIAAKSGASRATTTSRPTPAAASTAAR--------------SSPPVKFSNDTERLQ 64
E S++ S AS A+ S P+ A+TAA ++P K D
Sbjct: 6 EKQSSVFRGSLASAASKISNPSSIKAATAASLAPPSPSPSAASDSNTPTSKRKRDVAPDV 65
Query: 65 HINSIRKSPVGAQIKR----VIDRLLETRQAFTPEEI----NRDCYVDVNANKAVFDSLR 116
+ + + GA++K +D L + A T +I + Y + + K + + LR
Sbjct: 66 PFSQPQLTGYGAEVKTQMTFAVDYLKKKGDAKTITDIIDHLSLRNYTEEH-KKELMEGLR 124
Query: 117 NNPKVHY---------DGKRFSYKSK---HDLKDKSQLLVLVRKFPE--GIAVIDLKDSY 162
+P+V + K +YK + ++D + LL +++ + G++V DLKD +
Sbjct: 125 GHPRVDWKPDASLSEQTWKTGTYKHRPIIPGVRDGTSLLAHLQRKTDASGVSVKDLKDGW 184
Query: 163 PTVMEDLQALKAAGQIWLL-SNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD 221
P + L L+ ++ ++ + D+ + +D + + + + ++R + LPS + D
Sbjct: 185 PDCEDTLAKLEREHKVLVVRTKKDNFPRYVWADDASLHNPVEPEFQAMWRRVQLPS-LDD 243
Query: 222 IEKDLQKNGMKPATNTQKRRAAAQIQGISSKNKPKKKKHEISKRT-KLTNAHLPELFQKL 280
+ + L G KP T+ R+AA KPK++K KR K TN H+ L
Sbjct: 244 MHRKLVSVGQKP-TSDDPRKAAVT-------TKPKQQKKRAGKRIGKATNTHMTHLLNDY 295
Query: 281 NG 282
+G
Sbjct: 296 SG 297
>gi|326427981|gb|EGD73551.1| hypothetical protein PTSG_05258 [Salpingoeca sp. ATCC 50818]
Length = 249
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 118 NPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMEDLQALK 173
+ K+H + +++ +D+K+K +LL +++F + G+ V +L SY V+ D+ LK
Sbjct: 61 DSKLHLEDGYVAFQPTYDVKNKQELLDKLKEFDQKGLGGMRVDELDGSYDGVLLDVDELK 120
Query: 174 AAGQIWLLSNFDSQEDIAYPNDPRVPIKAD 203
A ++ + N + D+ + DP + + D
Sbjct: 121 AKDLVYCIHNKTDRVDVLFFKDPALRVHID 150
>gi|195337423|ref|XP_002035328.1| GM14648 [Drosophila sechellia]
gi|194128421|gb|EDW50464.1| GM14648 [Drosophila sechellia]
Length = 292
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 113 DSLRNNPKVHYD--GKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVM 166
++L NNPKV G +FS+K + +KD L+ L++ K GI + D+++S P
Sbjct: 115 EALHNNPKVEASPCGTKFSFKPVYKIKDGKTLMRLLKQHDLKGLGGILLDDVQESLPHCE 174
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IE 223
+ L+ ++A ++++ D ++ I + ND DD+ + L+R + D +D I+
Sbjct: 175 KVLKN-RSAEILFVIRPIDKKK-ILFYNDRTANFSVDDEFQKLWRSATV--DAMDDAKID 230
Query: 224 KDLQKNGMK 232
+ L+K G++
Sbjct: 231 EYLEKQGIR 239
>gi|194866434|ref|XP_001971881.1| GG15217 [Drosophila erecta]
gi|190653664|gb|EDV50907.1| GG15217 [Drosophila erecta]
Length = 292
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 113 DSLRNNPKVHYD--GKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVM 166
++L NNPKV G +FS+K + +KD L+ L++ K GI + D+++S P
Sbjct: 115 EALHNNPKVEASPCGTKFSFKPVYKIKDGKTLMRLLKQHDLKGLGGILLDDVQESLPHCE 174
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IE 223
+ L+ +AA ++++ D ++ + Y ND D++ + L+R + D +D I+
Sbjct: 175 KVLKN-RAAEILFIIRPIDKKKILFY-NDRTANFSVDEEFQKLWRSATV--DAMDDAKID 230
Query: 224 KDLQKNGMK 232
+ L+K G++
Sbjct: 231 EYLEKQGIR 239
>gi|17648009|ref|NP_523923.1| transcription factor IIEbeta, isoform A [Drosophila melanogaster]
gi|4098002|gb|AAD00188.1| TFIIE small subunit [Drosophila melanogaster]
gi|7292476|gb|AAF47880.1| transcription factor IIEbeta, isoform A [Drosophila melanogaster]
gi|66571252|gb|AAY51591.1| IP01109p [Drosophila melanogaster]
gi|220943316|gb|ACL84201.1| TfIIEbeta-PA [synthetic construct]
gi|220953358|gb|ACL89222.1| TfIIEbeta-PA [synthetic construct]
Length = 292
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 113 DSLRNNPKVHYD--GKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVM 166
++L NNPKV G +FS+K + +KD L+ L++ K GI + D+++S P
Sbjct: 115 EALHNNPKVEASPCGTKFSFKPVYKIKDGKTLMRLLKQHDLKGLGGILLDDVQESLPHCE 174
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IE 223
+ L+ ++A ++++ D ++ I + ND DD+ + L+R + D +D I+
Sbjct: 175 KVLKN-RSAEILFVVRPIDKKK-ILFYNDRTANFSVDDEFQKLWRSATV--DAMDDAKID 230
Query: 224 KDLQKNGMK 232
+ L+K G++
Sbjct: 231 EYLEKQGIR 239
>gi|195587738|ref|XP_002083618.1| GD13833 [Drosophila simulans]
gi|194195627|gb|EDX09203.1| GD13833 [Drosophila simulans]
Length = 292
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 113 DSLRNNPKVHYD--GKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVM 166
++L NNPKV G +FS+K + +KD L+ L++ K GI + D+++S P
Sbjct: 115 EALHNNPKVEASPCGTKFSFKPVYKIKDGKTLMRLLKQHDLKGLGGILLDDVQESLPHCE 174
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IE 223
+ L+ ++A ++++ D ++ + Y ND DD+ + L+R + D +D I+
Sbjct: 175 KVLKN-RSAEILFVIRPIDKKKILFY-NDRTANFSVDDEFQKLWRSATV--DAMDDAKID 230
Query: 224 KDLQKNGMK 232
+ L+K G++
Sbjct: 231 EYLEKQGIR 239
>gi|398396722|ref|XP_003851819.1| hypothetical protein MYCGRDRAFT_93943 [Zymoseptoria tritici IPO323]
gi|339471699|gb|EGP86795.1| hypothetical protein MYCGRDRAFT_93943 [Zymoseptoria tritici IPO323]
Length = 245
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 153 IAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRD 212
+ V DL+ +P + ++ L+ A I L+ + + + P + ++ DDD + L+
Sbjct: 124 VTVADLQVGWPDCVPEVNRLERAHHI-LVRRVKGKARAVWLDSPDLHMQVDDDFRDLWSG 182
Query: 213 IALPSDMLDIEKDLQKNGM 231
I +P D+ +I KDL+ M
Sbjct: 183 IKVPEDIEEIRKDLKTTNM 201
>gi|393239431|gb|EJD46963.1| transcription initiation factor IIE, beta subunit [Auricularia
delicata TFB-10046 SS5]
Length = 251
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 107 ANKAVFDSLRNNPKVHYDGKR--FSYKSKHDLKDKSQLLVLVRKFPE---GIAVIDLKDS 161
+++ + + + + +V +D K FSY+ +LK+K+ LL +++ G++V LK+S
Sbjct: 68 SDQHLLERFKGHDRVLHDEKTGLFSYRHDFNLKNKATLLTEIQRHARNGGGLSVRQLKES 127
Query: 162 YPTVMEDLQALKAAGQIWLLSNF-DSQEDIAYPNDPRVP-IKADDDLKLLFRDIALP--S 217
+ + L+ G++ + D Q + + N+ R P +D+ + ++ + +P +
Sbjct: 128 WKEAPAAIDELEKEGEVLVTRTLKDGQMKMVFWNEVRAPEPPVEDEFRSMWHSLVVPPEA 187
Query: 218 DMLDI 222
DML +
Sbjct: 188 DMLRV 192
>gi|281365637|ref|NP_001163346.1| transcription factor IIEbeta, isoform B [Drosophila melanogaster]
gi|272455047|gb|ACZ94618.1| transcription factor IIEbeta, isoform B [Drosophila melanogaster]
Length = 249
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 74/139 (53%), Gaps = 13/139 (9%)
Query: 113 DSLRNNPKVHYD--GKRFSYKSKHDLKDKSQLLVLVR----KFPEGIAVIDLKDSYPTVM 166
++L NNPKV G +FS+K + +KD L+ L++ K GI + D+++S P
Sbjct: 72 EALHNNPKVEASPCGTKFSFKPVYKIKDGKTLMRLLKQHDLKGLGGILLDDVQESLPHCE 131
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLD---IE 223
+ L+ ++A ++++ D ++ I + ND DD+ + L+R + D +D I+
Sbjct: 132 KVLKN-RSAEILFVVRPIDKKK-ILFYNDRTANFSVDDEFQKLWRSATV--DAMDDAKID 187
Query: 224 KDLQKNGMKPATNTQKRRA 242
+ L+K G++ + ++A
Sbjct: 188 EYLEKQGIRSMQDHGLKKA 206
>gi|164426610|ref|XP_957548.2| hypothetical protein NCU03909 [Neurospora crassa OR74A]
gi|16945428|emb|CAB91686.2| related to transcription initiation factor IIE, beta subunit
[Neurospora crassa]
gi|157071405|gb|EAA28312.2| predicted protein [Neurospora crassa OR74A]
Length = 302
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 136 LKDKSQLLVLVRKFPEG--IAVIDLKDSYPTVMEDLQALKAAGQIWLLS-NFDSQEDIAY 192
+++K+QLL ++K + + V +LKD +P + + L+A +I ++ + +
Sbjct: 158 VRNKTQLLAYLQKKTDASCVGVKELKDGWPDCEKAINELEAEHKILVIRVKKEGSPRYVW 217
Query: 193 PNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSK 252
+DP + + D +LK++++ + +P +++ L+ KPA+ + + +++
Sbjct: 218 LDDPSLFHEVDPELKVMWQKVEVPGTDTIVQR-LKAASQKPASEDPRDK-------MTAA 269
Query: 253 NKPKKKKHEISKRTKLTNAHLPELFQ 278
K +KKK + K TN H+ L +
Sbjct: 270 PKAEKKKRAQRRTGKATNTHMEHLLK 295
>gi|336466413|gb|EGO54578.1| hypothetical protein NEUTE1DRAFT_49195 [Neurospora tetrasperma FGSC
2508]
gi|350286722|gb|EGZ67969.1| transcription initiation factor IIE, beta subunit [Neurospora
tetrasperma FGSC 2509]
Length = 302
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 136 LKDKSQLLVLVRKFPEG--IAVIDLKDSYPTVMEDLQALKAAGQIWLLS-NFDSQEDIAY 192
+++K+QLL ++K + + V +LKD +P + + L+A +I ++ + +
Sbjct: 158 VRNKTQLLAYLQKKTDASCVGVKELKDGWPDCEKAINELEAEHKILVIRVKKEGSPRYVW 217
Query: 193 PNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSK 252
+DP + + D +LK++++ + +P +++ L+ KPA+ + + +++
Sbjct: 218 LDDPSLFHEVDPELKVMWQKVEVPGTDTIVQR-LKAASQKPASEDPRDK-------MTAA 269
Query: 253 NKPKKKKHEISKRTKLTNAHLPELFQ 278
K +KKK + K TN H+ L +
Sbjct: 270 PKAEKKKRAQRRTGKATNTHMEHLLK 295
>gi|119583851|gb|EAW63447.1| general transcription factor IIE, polypeptide 2, beta 34kDa,
isoform CRA_b [Homo sapiens]
Length = 220
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 113 DSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE-GIAVIDLKDSYPTVMEDLQA 171
++L NNPK+ ++++K K++++DK LL L+ + + G+ I L+D + +A
Sbjct: 122 EALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQKA 181
Query: 172 LKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADD 204
+KA G L N ++ I + ND D+
Sbjct: 182 VKALGDQILFVNRPDKKKILFFNDKSCQFSVDE 214
>gi|429962547|gb|ELA42091.1| hypothetical protein VICG_00940 [Vittaforma corneae ATCC 50505]
Length = 211
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Query: 74 VGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKRFSYKSK 133
V I R++D L + +A + EI ++V N + +L+ NPKV + +
Sbjct: 10 VNTFIHRILDFLKKHDRALSYSEIEEKTGINVLNNVQLVRALKINPKVAITHESIQFLPS 69
Query: 134 HDLKDKSQLLVLVRKF--PEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIA 191
+ ++ L+ +++K EGI + L +S + + L +I +L + D E +
Sbjct: 70 YVVRCMEDLVSILKKVNGKEGIEMNKLLESPIDISPFINKLVQQDKIIILKDIDDSEIVF 129
Query: 192 YPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMK 232
+ +P +K ++K L+ + +P ++ DI ++L + G+K
Sbjct: 130 FNEEPLPTLKK--EIKDLWASVKVP-NLHDITQELSEGGLK 167
>gi|395327704|gb|EJF60101.1| transcription initiation factor IIE subunit beta [Dichomitus
squalens LYAD-421 SS1]
Length = 290
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 99/211 (46%), Gaps = 18/211 (8%)
Query: 74 VGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKR--FSYK 131
V Q+ +++ L T +++ V+ +K + + + + +V +D K +SY+
Sbjct: 69 VNTQLVYLVNHLKATGNPMRLQDLAIFTNTPVDTDKVLLEKFKAHDRVIHDPKTDLYSYR 128
Query: 132 SKHDLKDKSQLLVLVRKFPE---GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNF-DSQ 187
++++K+ LL +++ G++V LK+S+ + ++ L+ G++++ D Q
Sbjct: 129 HDFNVRNKAALLTEIQRQTRKGGGLSVRTLKESWKEAPQAIEELEKEGEVYVTRTLKDGQ 188
Query: 188 EDIAY-----PNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRA 242
+ + PN+ + + + + L+ + +P+D +D+ K L G+ Q +
Sbjct: 189 MRMVFWNEVKPNEEQGGMAVEKEFHDLWHGLEVPND-VDLLKALASEGL------QATAS 241
Query: 243 AAQIQGISSKNKPKKKKHEISKRTKLTNAHL 273
AA + + K KK + ++TN HL
Sbjct: 242 AAPVPRAGGQKKKGKKAAPRQRPARITNTHL 272
>gi|336262293|ref|XP_003345931.1| hypothetical protein SMAC_06332 [Sordaria macrospora k-hell]
gi|380089002|emb|CCC13114.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 303
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 136 LKDKSQLLVLVRKFPEG--IAVIDLKDSYPTVMEDLQALKAAGQIWLLS-NFDSQEDIAY 192
+++K+QLL ++K + + V +LKD +P + + L+A +I ++ + +
Sbjct: 159 VRNKTQLLAYLQKKTDASCVGVKELKDGWPDCEKAINELEAEHKILVIRIKKEGLPRYVW 218
Query: 193 PNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRRAAAQIQGISSK 252
+DP + + D +LK++++ + +P +++ L+ KPA+ + + +++
Sbjct: 219 LDDPSLFHEVDPELKVMWQKVEVPGTDTIVQR-LKAASQKPASEDPRDK-------MTAA 270
Query: 253 NKPKKKKHEISKRTKLTNAHLPELFQ 278
K +KKK + K TN H+ L +
Sbjct: 271 PKAEKKKRAQRRTGKATNTHMEHLLK 296
>gi|453082406|gb|EMF10453.1| transcription initiation factor IIE, beta subunit [Mycosphaerella
populorum SO2202]
Length = 292
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 73/145 (50%), Gaps = 23/145 (15%)
Query: 114 SLRNNPKVHY-------DGKR-FSYKSKHDLKDKSQL--LVLVRKFPEGIAVIDLKDSYP 163
+L+++ +V Y +GK F Y+ KH + + +L + ++ +GI V DLKD +P
Sbjct: 120 ALQDSDRVEYIPKKSSANGKESFRYRPKHPVTNAEELKNYLARQQTAQGIPVKDLKDGWP 179
Query: 164 TVMEDLQALKAAGQIWLLSNFDSQEDIA---YPNDPRVPIKADDDLKLLFRDIA----LP 216
+ + L+ + +LL+ + +++ A +P+ P + ++ L FRD LP
Sbjct: 180 DCQKAIDQLER--EHFLLATRNKKDNTAKMIWPDSPACHV----EIALEFRDFWLKTKLP 233
Query: 217 SDMLDIEKDLQKNGMKPATNTQKRR 241
+ ++ +L+K + P + ++ R
Sbjct: 234 TTEGEVRNELEKASITPTSQVKELR 258
>gi|354547859|emb|CCE44594.1| hypothetical protein CPAR2_403970 [Candida parapsilosis]
Length = 280
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 98/217 (45%), Gaps = 18/217 (8%)
Query: 68 SIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD--G 125
I S + Q+ ++ + E Q + ++ + DV + L+ +V YD
Sbjct: 70 GISGSHLSTQLHLAVEYIKEQDQPVSIGKLQQTLSFDVE--HTLLPLLKEIDRVKYDENN 127
Query: 126 KRFSYKSKHDLKDKSQLLVLVRKFP--EGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSN 183
+ Y S H++K LL +RK +GI+V +LKD + + + L+A +I +L N
Sbjct: 128 RTLEYVSLHNIKTADDLLEFLRKQTTFKGISVKELKDGWAGCIRAIDDLEAEDKILVLRN 187
Query: 184 -FDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQKRR 241
++ + + N D+ K ++ D+ LP D+L + L G+KP
Sbjct: 188 KKENAPRLVWANAGGKVGAISDEFKKMWVDVKLPEPDVL--YQSLIDQGLKP-------- 237
Query: 242 AAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
A ++ + ++KK + ++R K+TN H+ + +
Sbjct: 238 TGADPSLVNKIPQQQEKKQKKARRGKITNTHMKGILK 274
>gi|68464975|ref|XP_723565.1| hypothetical protein CaO19.4882 [Candida albicans SC5314]
gi|68465352|ref|XP_723375.1| hypothetical protein CaO19.12345 [Candida albicans SC5314]
gi|46445405|gb|EAL04674.1| hypothetical protein CaO19.12345 [Candida albicans SC5314]
gi|46445602|gb|EAL04870.1| hypothetical protein CaO19.4882 [Candida albicans SC5314]
gi|238878580|gb|EEQ42218.1| hypothetical protein CAWG_00420 [Candida albicans WO-1]
Length = 284
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 101/220 (45%), Gaps = 18/220 (8%)
Query: 65 HINSIRKSPVGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYD 124
++ + S + Q+ ++ + E Q + E++ Y+ + + + L +V YD
Sbjct: 71 NMGEMTGSHLSTQLHLAVEYIKEHDQPISVEKLQN--YLSFDISHTLLPLLNEIDRVKYD 128
Query: 125 GKR--FSYKSKHDLKDKSQLLVLVRKFP--EGIAVIDLKDSYPTVMEDLQALKAAGQIWL 180
+ Y S H+++ LL +R+ +G +V +LKD + + + L++ G+I +
Sbjct: 129 ESKGTLEYVSLHNIRSSDDLLEFLRRQTTFKGTSVKELKDGWAGCVAAIDELESQGKILV 188
Query: 181 LSNF-DSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKDLQKNGMKPATNTQ 238
L N ++ + + N+ D + K ++ + LP D+L + L G+KP
Sbjct: 189 LRNKKENAPRLVWANNGGELGYIDTEFKDMWDQVKLPEPDVL--YQKLLDQGLKPT---- 242
Query: 239 KRRAAAQIQGISSKNKPKKKKHEISKRTKLTNAHLPELFQ 278
A I + + K+KK + ++R K+TN H+ + +
Sbjct: 243 ----GADPNLIKKQPQQKEKKQKKARRGKITNTHMKGILK 278
>gi|240848669|ref|NP_001155552.1| transcription initiation factor IIE subunit beta-like
[Acyrthosiphon pisum]
gi|239799422|dbj|BAH70632.1| ACYPI003970 [Acyrthosiphon pisum]
Length = 287
Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 25/177 (14%)
Query: 113 DSLRNNPKVHY--DGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVM 166
++L NPK+ DGK + +K + LKD+ LL L+++ GI + D+++S P
Sbjct: 120 EALPGNPKIERTPDGK-YMFKPPYKLKDRKALLKLLKQQDLKGLGGIMMDDIQESLPNCE 178
Query: 167 EDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPS-DMLDIEKD 225
+ L+ L+ +I + ++ + + ND I ++D K ++R IA+ + D IE+
Sbjct: 179 KALKHLQ--NEILYVCRPGDKKKVMFYNDKSATIDINEDFKKMWRSIAVENMDDEKIEEH 236
Query: 226 LQKNGMKPATNTQKRRAAAQIQGISSKNKPKKK----KHEISKRTKLTNAHLPELFQ 278
L+K G+ ++ Q GI N K+K K +SKR + N HL + +
Sbjct: 237 LEKQGI----------SSMQDNGIKKVNHVKRKKPVTKKRLSKRPR-DNEHLANVLE 282
>gi|167517026|ref|XP_001742854.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779478|gb|EDQ93092.1| predicted protein [Monosiga brevicollis MX1]
Length = 222
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 118 NPKVHYDGKRFSYKSKHDLKDKSQLLVLVRKFPE----GIAVIDLKDSYPTVMEDLQALK 173
N V +G+R SYK+ +D+ D L +RKF E G+ + ++ Y D Q L
Sbjct: 75 NRSVIVEGQRISYKAPYDVHDLDGLRRELRKFWESGLGGMRLDEIASCYKGAKADAQNLI 134
Query: 174 AAGQIWLLSN---------FDSQEDIAYPNDPR-------VPIKADDDLKLLFR 211
A G+++ + F + + P DP +P+K D D++ +
Sbjct: 135 ARGEVYQVMRKQHPAVPVLFHRESSLELPMDPELLSRWRTIPMKPDHDIQTFLK 188
>gi|403416515|emb|CCM03215.1| predicted protein [Fibroporia radiculosa]
Length = 286
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/170 (18%), Positives = 83/170 (48%), Gaps = 12/170 (7%)
Query: 74 VGAQIKRVIDRLLETRQAFTPEEINRDCYVDVNANKAVFDSLRNNPKVHYDGKR--FSYK 131
V Q+ V++ L T +++ ++ + + + + + +V YD K +SY+
Sbjct: 67 VNTQLVYVVNHLKSTGNPTRLQDLAILTNTPIDTDAVLLEKFKAHDRVLYDPKTDLYSYR 126
Query: 132 SKHDLKDKSQLLVLVRKFPE---GIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNF-DSQ 187
+++++K+ LL +++ G++V LK+S+ + ++ L+ G++++ D Q
Sbjct: 127 HDYNVRNKAALLTEIQRQTRKGGGLSVRTLKESWKEAPQAIEELENEGEVYVTRTLKDGQ 186
Query: 188 EDIAY-----PNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMK 232
+ + P++ + + + L+ + +P+D +D+ K L G++
Sbjct: 187 MRMVFWNEVKPDEESGGMPVEKEFNDLWHSLHVPND-VDLLKQLASEGLQ 235
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.129 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,148,530,494
Number of Sequences: 23463169
Number of extensions: 166292147
Number of successful extensions: 574199
Number of sequences better than 100.0: 349
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 260
Number of HSP's that attempted gapping in prelim test: 573837
Number of HSP's gapped (non-prelim): 391
length of query: 283
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 142
effective length of database: 9,050,888,538
effective search space: 1285226172396
effective search space used: 1285226172396
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 76 (33.9 bits)