BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023380
         (283 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FLU1|BIN4_ARATH DNA-binding protein BIN4 OS=Arabidopsis thaliana GN=BIN4 PE=1 SV=2
          Length = 454

 Score =  207 bits (528), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 98/142 (69%), Positives = 119/142 (83%), Gaps = 3/142 (2%)

Query: 105 STSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIY 164
           S+S LPLV+SEK+ RTK LVECEG+S+DLSGDMGAVGR++V  T     +M+LDLKGTIY
Sbjct: 271 SSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDT---TGDMYLDLKGTIY 327

Query: 165 KTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDES 224
           K+T++PSRTFC+V+ G +EAKIEAIMNDFIQL PQSNVYEAETMVEGTL+GF F+S+DES
Sbjct: 328 KSTIIPSRTFCVVNVGQTEAKIEAIMNDFIQLIPQSNVYEAETMVEGTLEGFTFESDDES 387

Query: 225 DKLAKAMPHQIDQNDGIEEQTN 246
           +K AK      DQ+ G EE+TN
Sbjct: 388 NKNAKTAVKPADQSVGTEEETN 409


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.125    0.338 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,117,110
Number of Sequences: 539616
Number of extensions: 4144204
Number of successful extensions: 20258
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 311
Number of HSP's that attempted gapping in prelim test: 18124
Number of HSP's gapped (non-prelim): 1675
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)