Query 023380
Match_columns 283
No_of_seqs 38 out of 40
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 03:36:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06764 hypothetical protein; 72.2 4.5 9.7E-05 33.7 3.3 65 100-166 24-97 (105)
2 PF08097 Toxin_26: Conotoxin T 59.5 3 6.5E-05 22.6 -0.0 9 256-264 3-11 (11)
3 PF08669 GCV_T_C: Glycine clea 29.4 69 0.0015 24.2 3.2 31 139-170 64-94 (95)
4 smart00683 DM16 Repeats in sea 29.0 33 0.00073 25.7 1.4 19 129-147 9-27 (55)
5 COG1254 AcyP Acylphosphatases 28.4 27 0.00059 28.2 0.9 36 153-192 26-61 (92)
6 COG1465 Predicted alternative 21.2 81 0.0018 31.5 2.7 59 118-182 273-341 (376)
7 PF13344 Hydrolase_6: Haloacid 18.9 60 0.0013 25.5 1.1 18 155-172 1-19 (101)
8 PF09871 DUF2098: Uncharacteri 18.9 90 0.002 25.5 2.1 34 136-169 13-46 (91)
9 COG3204 Uncharacterized protei 17.4 1.8E+02 0.0038 28.9 4.1 45 111-165 248-299 (316)
10 PRK11857 dihydrolipoamide acet 17.4 97 0.0021 29.6 2.3 60 131-204 216-282 (306)
No 1
>PRK06764 hypothetical protein; Provisional
Probab=72.17 E-value=4.5 Score=33.70 Aligned_cols=65 Identities=23% Similarity=0.331 Sum_probs=44.0
Q ss_pred hcCCCCCcccceeeccccccceeeeec------cCCccc-cCCCccccc--eEEecCCCCCCcceEEeecceeeee
Q 023380 100 SMLNVSTSTLPLVMSEKLQRTKALVEC------EGESVD-LSGDMGAVG--RILVPGTAEGNHEMFLDLKGTIYKT 166 (283)
Q Consensus 100 ~~~~vs~~~lPlvlp~kv~r~k~LvE~------eg~slD-LsGD~GAVG--R~~v~~~~~~~~~l~LDLKG~iY~a 166 (283)
-+|++|....|-+--+++|.-.+.+-. -|.+|| ||||.-||- ...+.-.. -...++-..|+||+-
T Consensus 24 lepsvs~ae~~q~~~enfn~i~v~mn~~e~y~lsgrsidilsgdkeaiqlnkyti~f~k--pg~yvirvngciy~d 97 (105)
T PRK06764 24 LEPSVSAAESQQVKEENFNAIDVSMNINELYVLSGRSIDVLSGDKEAIQLNKYTIRFSK--PGKYVIRVNGCIYND 97 (105)
T ss_pred eccccchhcchhhhhcccceEEEEEeccceEEEcCceeeeecCChhheEeeeeEEEecC--CccEEEEEccEEeee
Confidence 367888888888888888755554443 367998 799999874 22222111 235667788999974
No 2
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=59.48 E-value=3 Score=22.61 Aligned_cols=9 Identities=56% Similarity=1.531 Sum_probs=8.3
Q ss_pred Ccchhhhhh
Q 023380 256 CRKERYECW 264 (283)
Q Consensus 256 ~~~~~~~~~ 264 (283)
|.+-||-||
T Consensus 3 cpviryccw 11 (11)
T PF08097_consen 3 CPVIRYCCW 11 (11)
T ss_pred cchhheecC
Confidence 788999999
No 3
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....
Probab=29.39 E-value=69 Score=24.24 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=20.8
Q ss_pred ccceEEecCCCCCCcceEEeecceeeeeeEec
Q 023380 139 AVGRILVPGTAEGNHEMFLDLKGTIYKTTLVP 170 (283)
Q Consensus 139 AVGR~~v~~~~~~~~~l~LDLKG~iY~atIvP 170 (283)
|+|.|-...... ...|.+++.|..|.|+|++
T Consensus 64 ala~v~~~~~~~-g~~l~v~~~g~~~~a~v~~ 94 (95)
T PF08669_consen 64 ALAYVDREYAEP-GTELEVEIRGKRVPATVVK 94 (95)
T ss_dssp EEEEEEGGGGST-TSEEEEEETTEEEEEEEE-
T ss_pred EEEEECHHHcCC-CCEEEEEECCEEEEEEEeC
Confidence 345554333222 4689999999999999986
No 4
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=28.99 E-value=33 Score=25.73 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.8
Q ss_pred CccccCCCccccceEEecC
Q 023380 129 ESVDLSGDMGAVGRILVPG 147 (283)
Q Consensus 129 ~slDLsGD~GAVGR~~v~~ 147 (283)
+--|++||.|-.|+|+|.+
T Consensus 9 ~Ved~kgn~G~~G~l~VTN 27 (55)
T smart00683 9 GVEDTKGNNGDLGVFFVTN 27 (55)
T ss_pred CeEecCCCCCCeeEEEEEe
Confidence 4569999999999999975
No 5
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=28.43 E-value=27 Score=28.18 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=29.8
Q ss_pred cceEEeecceeeeeeEecCccEEEEeecCCchhhhheecc
Q 023380 153 HEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMND 192 (283)
Q Consensus 153 ~~l~LDLKG~iY~atIvPs~T~~VVsvg~tEAKVEai~~d 192 (283)
.++.|+|+|.++| +|-+++=||..|.+++ |+.+.+.
T Consensus 26 ~A~~lgl~G~V~N---~~DGsVeiva~G~~~~-v~~~~~~ 61 (92)
T COG1254 26 EALRLGLTGWVKN---LDDGSVEIVAEGPDEA-VEKFIEW 61 (92)
T ss_pred HHHHCCCEEEEEE---CCCCeEEEEEEcCHHH-HHHHHHH
Confidence 5778999999887 6778999999999999 7765543
No 6
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=21.18 E-value=81 Score=31.54 Aligned_cols=59 Identities=27% Similarity=0.444 Sum_probs=39.5
Q ss_pred ccceeeeecc-CC---ccccCCC--ccccceEEecCCCCCCcceEE---eecceeeeeeEecCc-cEEEEeecCC
Q 023380 118 QRTKALVECE-GE---SVDLSGD--MGAVGRILVPGTAEGNHEMFL---DLKGTIYKTTLVPSR-TFCIVSFGHS 182 (283)
Q Consensus 118 ~r~k~LvE~e-g~---slDLsGD--~GAVGR~~v~~~~~~~~~l~L---DLKG~iY~atIvPs~-T~~VVsvg~t 182 (283)
+||+.|.||. |+ -+|+.|- ++.|||+-|+. +.|.| -..|..-. +|+--+ |+-+|+-..+
T Consensus 273 ~kTkYLaEL~aGDeV~iVD~dGr~R~aiVGRvKIEr-----RPl~lIeAey~g~~i~-tiLQNAETIkLv~~dG~ 341 (376)
T COG1465 273 GKTKYLAELKAGDEVLIVDFDGRTRSAIVGRVKIER-----RPLMLIEAEYEGVEIS-TILQNAETIKLVNPDGE 341 (376)
T ss_pred CceEEhhhhcCCCeEEEEecCCceeEEEEEEEEeec-----CceEEEEEEecCcEEE-EEeccceeEEEEcCCCc
Confidence 6999999999 43 7788886 47899999995 55654 23344333 344444 7777665444
No 7
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=18.93 E-value=60 Score=25.48 Aligned_cols=18 Identities=28% Similarity=0.767 Sum_probs=13.5
Q ss_pred eEEeecceeee-eeEecCc
Q 023380 155 MFLDLKGTIYK-TTLVPSR 172 (283)
Q Consensus 155 l~LDLKG~iY~-atIvPs~ 172 (283)
+.+||-||+|+ .+.+|.+
T Consensus 1 ~l~D~dGvl~~g~~~ipga 19 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGA 19 (101)
T ss_dssp EEEESTTTSEETTEE-TTH
T ss_pred CEEeCccEeEeCCCcCcCH
Confidence 47999999999 4667763
No 8
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=18.88 E-value=90 Score=25.46 Aligned_cols=34 Identities=21% Similarity=0.453 Sum_probs=27.6
Q ss_pred CccccceEEecCCCCCCcceEEeecceeeeeeEe
Q 023380 136 DMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLV 169 (283)
Q Consensus 136 D~GAVGR~~v~~~~~~~~~l~LDLKG~iY~atIv 169 (283)
-+|.+|+|+.-...++..=++||--+..|++..+
T Consensus 13 ~TGT~G~V~diK~ed~~~wv~LD~t~L~Yr~~~L 46 (91)
T PF09871_consen 13 NTGTVGKVVDIKEEDGETWVLLDSTDLYYRPDYL 46 (91)
T ss_pred CCCeEEEEEEEEEeCCCeEEEEccCCceeeccee
Confidence 3788898887766667788899999999998654
No 9
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=17.41 E-value=1.8e+02 Score=28.87 Aligned_cols=45 Identities=27% Similarity=0.512 Sum_probs=30.2
Q ss_pred eeeccccccceeeeeccCCccccCCCccccceEEecCCCC-------CCcceEEeecceeee
Q 023380 111 LVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAE-------GNHEMFLDLKGTIYK 165 (283)
Q Consensus 111 lvlp~kv~r~k~LvE~eg~slDLsGD~GAVGR~~v~~~~~-------~~~~l~LDLKG~iY~ 165 (283)
|||++ .+.+|+|+ |++|++ +|++.--++-. .+.|+.+|=-|.+|-
T Consensus 248 LVLS~---ESr~l~Ev-----d~~G~~--~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI 299 (316)
T COG3204 248 LVLSD---ESRRLLEV-----DLSGEV--IELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI 299 (316)
T ss_pred EEEec---CCceEEEE-----ecCCCe--eeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence 55554 66777774 677777 77776543322 356888888899984
No 10
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=17.35 E-value=97 Score=29.58 Aligned_cols=60 Identities=12% Similarity=0.242 Sum_probs=41.3
Q ss_pred cccCCCccccceEEecCCCCCCcceEEeecceeeeeeEecCccEEEEeecCCchhhhheecc-------ceeeccCcchh
Q 023380 131 VDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMND-------FIQLKPQSNVY 203 (283)
Q Consensus 131 lDLsGD~GAVGR~~v~~~~~~~~~l~LDLKG~iY~atIvPs~T~~VVsvg~tEAKVEai~~d-------fiqLr~~~~~~ 203 (283)
-||+| |-|.|.+ -|+. |..|-+-|++-+-.|++.+|.-+-+....-.+ .+-|.+++++.
T Consensus 216 ~dl~g-----gTfTISN-----lG~~----G~~~~tpiIn~pq~aILgvG~i~~~pvv~~g~i~~r~~m~lslt~DHRvi 281 (306)
T PRK11857 216 DEMKG-----GSFTITN-----YGSV----GSLYGVPVINYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRWI 281 (306)
T ss_pred hhcCC-----ccEEEeC-----CCCC----CccceecccCCCccceeecccceEEeEEECCEEEEeeeeEEeEecchhhh
Confidence 45665 7788874 4543 78888889999999999999987665432112 24556777754
Q ss_pred h
Q 023380 204 E 204 (283)
Q Consensus 204 e 204 (283)
+
T Consensus 282 D 282 (306)
T PRK11857 282 D 282 (306)
T ss_pred C
Confidence 4
Done!