BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023381
(283 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356505441|ref|XP_003521499.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 314
Score = 330 bits (846), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 178/279 (63%), Positives = 215/279 (77%), Gaps = 16/279 (5%)
Query: 9 AASSSLCNKLYNLQAITQIPTNHLPSLFKTK--SPKPLKLE-KAQNPSALHLSLLSLSYF 65
A SSS+CN++YNL + T + F+ + S KP L K+Q + LS L
Sbjct: 3 AVSSSICNRIYNL-SFTHPSLSLTTCNFRQRPISQKPFTLNLKSQ---SFTLSFFPLHRL 58
Query: 66 RQFSASFDGFQVTEDS----QDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLP 121
SA+FDGF+V +D+ QDEPETE E+ E+E + KV+ S +A RLYVGNLP
Sbjct: 59 PPPSAAFDGFEVAQDTTEFQQDEPETEPVEKTEQEEEQ-----KVSDSYDAGRLYVGNLP 113
Query: 122 YSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181
YS+T+S+LAE+F EAGTVAS EI+YDRVTDRSRGF FVTMG+VE+AKEAIR+FDGSQ+GG
Sbjct: 114 YSITNSALAELFGEAGTVASVEIMYDRVTDRSRGFAFVTMGNVEDAKEAIRMFDGSQVGG 173
Query: 182 RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG 241
RTVKVNFPEVP+GGER MG K++NSY+GFVDSPHKIYAGNLGWGLTSQGLR+AF QPG
Sbjct: 174 RTVKVNFPEVPKGGERLVMGSKIRNSYRGFVDSPHKIYAGNLGWGLTSQGLREAFAEQPG 233
Query: 242 LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+LSAKVI+ER +GRSRGFGFV+FETAE Q+ALD MNGV
Sbjct: 234 VLSAKVIYERDSGRSRGFGFVSFETAESAQAALDIMNGV 272
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 53/81 (65%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + +TS L E FAE V SA+++Y+R + RSRGFGFV+ + E A+
Sbjct: 205 DSPHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQA 264
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
A+ + +G ++ GR +++N E
Sbjct: 265 ALDIMNGVEVQGRPLRLNLAE 285
>gi|356572637|ref|XP_003554474.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 317
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 175/287 (60%), Positives = 213/287 (74%), Gaps = 19/287 (6%)
Query: 1 MAASTVSMAASSSLCNKLYNL---QAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHL 57
MAA+ + SSS+CN++YNL + +++ P ++ P L LE + L
Sbjct: 1 MAATA---SVSSSICNRIYNLSFTHPSLSLTSSNFPQRPVSQKPLSLNLES----QSFAL 53
Query: 58 SLLSLSYFRQFSASFDGFQVTEDS----QDEPETEQEEEEEEEAVEEEEEPKVAASDEAA 113
S L L A+FDG +V +D+ QDEPE E E+ E+E + KV+ S++A
Sbjct: 54 SFLPLHRLPPPFAAFDGLEVAQDTTESQQDEPEPETVEKTEQEEEQ-----KVSDSNDAG 108
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLPYS+T+S L E+F EAGTVAS EIVYDRVTDRSRGF FVTMGSVE+AKEAIR+
Sbjct: 109 RLYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRM 168
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
FDGSQ+GGRTVKVNFPEVP+GGER MG K+ NSY+GFVDSPHKIYAGNLGWGLTSQGLR
Sbjct: 169 FDGSQVGGRTVKVNFPEVPKGGERLVMGSKILNSYRGFVDSPHKIYAGNLGWGLTSQGLR 228
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+AF QPG+LSAKVI+ER +GRSRGFGFV+FETAE ++ALD MNGV
Sbjct: 229 EAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARAALDIMNGV 275
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 53/81 (65%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + +TS L E FAE V SA+++Y+R + RSRGFGFV+ + E A+
Sbjct: 208 DSPHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARA 267
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
A+ + +G ++ GR +++N E
Sbjct: 268 ALDIMNGVEVQGRPLRLNLAE 288
>gi|449437482|ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449528229|ref|XP_004171108.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 323
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 161/268 (60%), Positives = 205/268 (76%), Gaps = 12/268 (4%)
Query: 18 LYNLQAITQIPTNHLPSLFKTKSPKPLKLEKA--QNPSALHLSLLSLSYFRQFSASFDGF 75
LYN TQ P N +PS F K + LKL +P+ LS S+S+ +FD
Sbjct: 22 LYNKHFFTQHP-NQIPSHFSPKHNQ-LKLLNLTFHSPNFYPLSFSSVSHLHCAPPAFDEL 79
Query: 76 QVTEDSQDEPETEQ---EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEV 132
++++ PETE +E + EE +EE+E KV+ S EA +LY+GNLPY+MTSS L+EV
Sbjct: 80 EISD-----PETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIGNLPYAMTSSQLSEV 134
Query: 133 FAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192
FAEAG V S +++YD+VTDRSRGF FVTM ++EEAKEAIR+FDGSQIGGRTV+VNFPEVP
Sbjct: 135 FAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVP 194
Query: 193 RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY 252
RGGE+ MGP++++SY FVDSPHKIYAGNLGWGLTSQ LRDAF+ QPG+LSAK+I++R
Sbjct: 195 RGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRA 254
Query: 253 TGRSRGFGFVTFETAEDLQSALDAMNGV 280
+G+SRGFGFV+FETAED +SAL++MNGV
Sbjct: 255 SGKSRGFGFVSFETAEDAESALESMNGV 282
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + +TS SL + F + SA+I+YDR + +SRGFGFV+ + E+A+
Sbjct: 215 DSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAES 274
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A+ +G ++ GR +++N
Sbjct: 275 ALESMNGVEVEGRPLRLNI 293
>gi|225463276|ref|XP_002264127.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 311
Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 165/268 (61%), Positives = 195/268 (72%), Gaps = 30/268 (11%)
Query: 19 YNLQAITQIP-TNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQV 77
Y + ++ IP + H PS+ PKPLKL SA F
Sbjct: 27 YRISKLSLIPISTHFPSI-----PKPLKLTTQ-------------------SAHFPHHLC 62
Query: 78 TEDSQDEPE-----TEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEV 132
+P+ E+EEEEEEE EEEE+PKV+ S EA+RLYVGNLPYSMTSS L +V
Sbjct: 63 RTTQHQDPQLQEEEEEEEEEEEEEQQEEEEDPKVSDSAEASRLYVGNLPYSMTSSQLGDV 122
Query: 133 FAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192
F EAG+V S EIVYDRVTDRSRGF FVTMGSV+EAKEAIR+FDGSQ+GGRTVKVNFPEVP
Sbjct: 123 FNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFDGSQVGGRTVKVNFPEVP 182
Query: 193 RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY 252
RGGERA MGPK+++SY+GFVDSP+KIYAGNL W LTS+GLRDAF PGLL AKVI+ER
Sbjct: 183 RGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERE 242
Query: 253 TGRSRGFGFVTFETAEDLQSALDAMNGV 280
+GRSRGFGF++F +AE+ +SAL+AMN V
Sbjct: 243 SGRSRGFGFLSFASAENAESALNAMNEV 270
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 104 PKVAAS-----DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
PK+ +S D ++Y GNL + +TS L + FA+ + A+++Y+R + RSRGFGF
Sbjct: 192 PKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGF 251
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191
++ S E A+ A+ + ++ GR +++N V
Sbjct: 252 LSFASAENAESALNAMNEVEVEGRPLRLNLAAV 284
>gi|147769830|emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera]
Length = 454
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 165/263 (62%), Positives = 196/263 (74%), Gaps = 16/263 (6%)
Query: 19 YNLQAITQIP-TNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQV 77
Y + ++ IP + H PS+ PKPLKL HL + Q
Sbjct: 166 YRISKLSLIPISTHFPSI-----PKPLKLTTQSAHFPHHLCRXTQHQDPQLQEE------ 214
Query: 78 TEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAG 137
++E E E+EEEEEEE EEEE+PKV+ S EA+RLYVGNLPYSMTSS L VF EAG
Sbjct: 215 ----EEEEEEEEEEEEEEEQQEEEEDPKVSDSAEASRLYVGNLPYSMTSSQLGXVFNEAG 270
Query: 138 TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGER 197
+V S EIVYDRVTDRSRGF FVTMGSV+EAKEAIR+FDGSQ+GGRTVKVNFPEVPRGGER
Sbjct: 271 SVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFDGSQVGGRTVKVNFPEVPRGGER 330
Query: 198 AAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSR 257
A MGPK+++SY+GFVDSP+KIYAGNL W LTS+GLRDAF PGLL AKVI+ER +GRSR
Sbjct: 331 AVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAFADXPGLLGAKVIYERESGRSR 390
Query: 258 GFGFVTFETAEDLQSALDAMNGV 280
GFGF++F +AE+ +SAL+AMB V
Sbjct: 391 GFGFLSFASAENAESALNAMBEV 413
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 104 PKVAAS-----DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
PK+ +S D ++Y GNL + +TS L + FA+ + A+++Y+R + RSRGFGF
Sbjct: 335 PKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAFADXPGLLGAKVIYERESGRSRGFGF 394
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191
++ S E A+ A+ B ++ GR +++N V
Sbjct: 395 LSFASAENAESALNAMBEVEVEGRPLRLNLAAV 427
>gi|20009|emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum]
Length = 292
Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 132/170 (77%), Positives = 151/170 (88%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP+SMTSS L+E+FAEAGTVA+ EIVYDRVTDRSRGF FVTMGSVEEAKEAIRL
Sbjct: 104 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 163
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
FDGSQ+GGRTVKVNFPEVPRGGER M K++++YQGFVDSPHK+Y NL W LTSQGLR
Sbjct: 164 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 223
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVRL 283
DAF QPG +SAKVI++R +GRSRGFGF+TF +AE ++SALD MN VVR+
Sbjct: 224 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDTMNEVVRI 273
>gi|311952|emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 130/167 (77%), Positives = 148/167 (88%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP+SMTSS L+E+FAEAGTVA+ EIVYDRVTDRSRGF FVTMGSVEEAKEAIRL
Sbjct: 110 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 169
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
FDGSQ+GGRTVKVNFPEVPRGGER M K++++YQGFVDSPHK+Y NL W LTSQGLR
Sbjct: 170 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 229
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
DAF QPG +SAKVI++R +GRSRGFGF+TF +AE ++SALD MN V
Sbjct: 230 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDTMNEV 276
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D +LYV NL +++TS L + FA+ SA+++YDR + RSRGFGF+T S E K
Sbjct: 209 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKS 268
Query: 170 AIRLFDGSQIGGRTVKVN 187
A+ + ++ GR +++N
Sbjct: 269 ALDTMNEVELEGRPLRLN 286
>gi|224138286|ref|XP_002322776.1| predicted protein [Populus trichocarpa]
gi|222867406|gb|EEF04537.1| predicted protein [Populus trichocarpa]
Length = 324
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 166/285 (58%), Positives = 211/285 (74%), Gaps = 14/285 (4%)
Query: 1 MAASTVSMAASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLL 60
+AAST++ + + +KL + IP+ L F K KPLKL +QN ++L S
Sbjct: 6 VAASTITSSPLHTKLSKLSFTHSQLLIPSYFLSKPF-LKPLKPLKL-NSQNSNSLPHS-- 61
Query: 61 SLSYFRQFSASFDGFQVTED----SQDEPETEQEEEEEEEAVEEEEEPKVAA--SDEAAR 114
F+A+FD F+V D +QD+P++E +E ++E EEEEE V A + E +
Sbjct: 62 ----HGTFAATFDNFEVETDENIAAQDDPQSETDEFDQEIVEEEEEEEDVVAIKAREEGK 117
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLPYSMTSS LAEVF EAG V AE++ DRVTDRSRGFGFVTM SVEEAKEAIR+F
Sbjct: 118 LYVGNLPYSMTSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRMF 177
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+GSQ+GGRT++VNFPEVPRGGER M P++++ Y+GF+DS HKIYAGNLGW LTS+GL D
Sbjct: 178 NGSQVGGRTLRVNFPEVPRGGEREVMEPRIRSGYKGFIDSEHKIYAGNLGWRLTSEGLGD 237
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF QPGLLSAKVI+ER TGRSRGFGFV+F++AE+ ++AL+AMNG
Sbjct: 238 AFANQPGLLSAKVIYERDTGRSRGFGFVSFDSAENAEAALEAMNG 282
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 10/117 (8%)
Query: 103 EPKVAAS-----DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
EP++ + D ++Y GNL + +TS L + FA + SA+++Y+R T RSRGFG
Sbjct: 204 EPRIRSGYKGFIDSEHKIYAGNLGWRLTSEGLGDAFANQPGLLSAKVIYERDTGRSRGFG 263
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDS 214
FV+ S E A+ A+ +G ++ GR +++N GER+ P +N+ + ++S
Sbjct: 264 FVSFDSAENAEAALEAMNGEEVDGRPLRLNL-----AGERSYPPPAKENNTEDNLES 315
>gi|133249|sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|100390|pir||S12111 ribonucleoprotein, 33K, precursor - common tobacco
gi|20005|emb|CAA37879.1| unnamed protein product [Nicotiana tabacum]
Length = 324
Score = 283 bits (724), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 130/167 (77%), Positives = 147/167 (88%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP+SMTSS L+E+FAEAGTVA+ EIVYDRVTDRSRGF FVTMGSVEEAKEAIRL
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
FDGSQ+GGRTVKVNFPEVPRGGER M K++++YQGFVDSPHK+Y NL W LTSQGLR
Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 234
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
DAF QPG +SAKVI++R +GRSRGFGF+TF +AE + SALD MN V
Sbjct: 235 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEV 281
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D +LYV NL +++TS L + FA+ SA+++YDR + RSRGFGF+T S E
Sbjct: 214 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNS 273
Query: 170 AIRLFDGSQIGGRTVKVN 187
A+ + ++ GR +++N
Sbjct: 274 ALDTMNEVELEGRPLRLN 291
>gi|224091455|ref|XP_002309257.1| predicted protein [Populus trichocarpa]
gi|222855233|gb|EEE92780.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 169/285 (59%), Positives = 214/285 (75%), Gaps = 12/285 (4%)
Query: 1 MAASTVSMAASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLE-KAQNPSALHLSL 59
MAAST++ SS L KL NL + T P LPS F +K + N + LSL
Sbjct: 1 MAASTIT---SSPLHTKLSNL-SFTHSPLP-LPSHFSSKPLLKPLKPPQLNNHDSNSLSL 55
Query: 60 LSLSYFRQ-FSASFDGFQV-TEDSQ---DEPETEQEEEEEEEAVEEEEEPKVAASDEAAR 114
LSL +F F+AS D F+ TE++ D+P++E +E ++E VEEE + + + E +
Sbjct: 56 LSLPHFHGIFAASSDSFESGTEENTTALDDPQSETDEFDQE-IVEEEGDVEAIKATEEGK 114
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLPYSMTSS L EVF EAG V SAE++YDRVTDRSRGFGFVTMGSVEEAK+AI++F
Sbjct: 115 LYVGNLPYSMTSSELTEVFEEAGRVFSAEVIYDRVTDRSRGFGFVTMGSVEEAKKAIQMF 174
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G+Q GGR+V+VNFPEVPRGGER MGP++Q+ Y+GF+DS HKIYAGNLGW LTS+GLRD
Sbjct: 175 NGTQFGGRSVRVNFPEVPRGGEREVMGPRIQSGYKGFIDSEHKIYAGNLGWRLTSEGLRD 234
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF QPG+LSAKVI+ER + RSRGFGFV+FE+AE+ ++AL+AMNG
Sbjct: 235 AFANQPGVLSAKVIYERDSRRSRGFGFVSFESAENAEAALEAMNG 279
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + +TS L + FA V SA+++Y+R + RSRGFGFV+ S E A+
Sbjct: 213 DSEHKIYAGNLGWRLTSEGLRDAFANQPGVLSAKVIYERDSRRSRGFGFVSFESAENAEA 272
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERA 198
A+ +G ++ GR +++N GER+
Sbjct: 273 ALEAMNGEEVEGRPMRLNL-----AGERS 296
>gi|297816516|ref|XP_002876141.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
gi|297321979|gb|EFH52400.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
Length = 330
Score = 273 bits (699), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 147/249 (59%), Positives = 185/249 (74%), Gaps = 3/249 (1%)
Query: 35 LFKTKSPKPLKL-EKAQNPSALHLSLLSLSYF--RQFSASFDGFQVTEDSQDEPETEQEE 91
LF +PK KL NP LH ++ +F + AS ++ ++E E E+EE
Sbjct: 36 LFYRFTPKSFKLVANCPNPLILHSNIRRHRFFCAAETEASSADEEIQASLEEEEEVEEEE 95
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
EEE E + +E+ AS E RLYVGNLPY++TSS L+++F EAG V +IVYD+VTD
Sbjct: 96 EEEVEEEDADEKQTTQASGEEGRLYVGNLPYTITSSELSQLFGEAGNVVDVQIVYDKVTD 155
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF 211
RSRGFGFVTMG++EEAKEAI++F+ SQIGGRTVKVN PEVPRGGER M K++++ + +
Sbjct: 156 RSRGFGFVTMGTIEEAKEAIQMFNSSQIGGRTVKVNLPEVPRGGEREVMRTKIRDNNRSY 215
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
VDSPHKIYAGNLGW LTSQGL+DAF QPG+L AKVI+ER TGRSRGFGF++FE+AED+Q
Sbjct: 216 VDSPHKIYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAEDVQ 275
Query: 272 SALDAMNGV 280
SAL MNGV
Sbjct: 276 SALATMNGV 284
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL +++TS L + F + V A+++Y+R T RSRGFGF++ S E+ +
Sbjct: 217 DSPHKIYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAEDVQS 276
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A+ +G ++ GR +++N
Sbjct: 277 ALATMNGVEVEGRALRLNL 295
>gi|15231200|ref|NP_190806.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
gi|681910|dbj|BAA06522.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|4886289|emb|CAB43448.1| RNA-binding protein cp33 precursor [Arabidopsis thaliana]
gi|14517544|gb|AAK62662.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|18700226|gb|AAL77723.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|21553418|gb|AAM62511.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|332645419|gb|AEE78940.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
Length = 329
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 145/251 (57%), Positives = 186/251 (74%), Gaps = 8/251 (3%)
Query: 35 LFKTKSPKPLKL-EKAQNPSALHLSLLSLSYF----RQFSASFDGFQVTEDSQDEPETEQ 89
LF +PK KL NP LH ++ +F + S++ D Q + + ++E E E
Sbjct: 36 LFYRFTPKSFKLVANCPNPLILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEG 95
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
+E EEE E++ AS E RLYVGNLPY++TSS L+++F EAGTV +IVYD+V
Sbjct: 96 DEGEEEVEEEKQ---TTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKV 152
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
TDRSRGFGFVTMGS+EEAKEA+++F+ SQIGGRTVKVNFPEVPRGGE M K++++ +
Sbjct: 153 TDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNR 212
Query: 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
+VDSPHK+YAGNLGW LTSQGL+DAF QPG+L AKVI+ER TGRSRGFGF++FE+AE+
Sbjct: 213 SYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAEN 272
Query: 270 LQSALDAMNGV 280
+QSAL MNGV
Sbjct: 273 VQSALATMNGV 283
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL +++TS L + F + V A+++Y+R T RSRGFGF++ S E +
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A+ +G ++ GR +++N
Sbjct: 276 ALATMNGVEVEGRALRLNL 294
>gi|681912|dbj|BAA06523.1| RNA-binding protein cp33 [Arabidopsis thaliana]
Length = 321
Score = 271 bits (692), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 145/251 (57%), Positives = 186/251 (74%), Gaps = 8/251 (3%)
Query: 35 LFKTKSPKPLKL-EKAQNPSALHLSLLSLSYF----RQFSASFDGFQVTEDSQDEPETEQ 89
LF +PK KL NP LH ++ +F + S++ D Q + + ++E E E
Sbjct: 28 LFYRFTPKSFKLVANCPNPLILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEG 87
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
+E EEE E++ AS E RLYVGNLPY++TSS L+++F EAGTV +IVYD+V
Sbjct: 88 DEGEEEVEEEKQ---TTQASGEEWRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKV 144
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
TDRSRGFGFVTMGS+EEAKEA+++F+ SQIGGRTVKVNFPEVPRGGE M K++++ +
Sbjct: 145 TDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNR 204
Query: 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
+VDSPHK+YAGNLGW LTSQGL+DAF QPG+L AKVI+ER TGRSRGFGF++FE+AE+
Sbjct: 205 SYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAEN 264
Query: 270 LQSALDAMNGV 280
+QSAL MNGV
Sbjct: 265 VQSALATMNGV 275
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL +++TS L + F + V A+++Y+R T RSRGFGF++ S E +
Sbjct: 208 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 267
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A+ +G ++ GR +++N
Sbjct: 268 ALATMNGVEVEGRALRLNL 286
>gi|17064758|gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana]
Length = 329
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/251 (57%), Positives = 185/251 (73%), Gaps = 8/251 (3%)
Query: 35 LFKTKSPKPLKL-EKAQNPSALHLSLLSLSYF----RQFSASFDGFQVTEDSQDEPETEQ 89
LF +PK KL NP LH ++ +F + S++ D Q + + ++E E E
Sbjct: 36 LFYRFTPKSFKLVANCPNPLILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEG 95
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
+E EEE E++ AS E RLYVGNLPY++TSS L+++F EAGTV +IVYD+V
Sbjct: 96 DEGEEEVEEEKQ---TTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKV 152
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
TDRSRGFGFVTMGS+EEAK A+++F+ SQIGGRTVKVNFPEVPRGGE M K++++ +
Sbjct: 153 TDRSRGFGFVTMGSIEEAKGAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNR 212
Query: 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
+VDSPHK+YAGNLGW LTSQGL+DAF QPG+L AKVI+ER TGRSRGFGF++FE+AE+
Sbjct: 213 SYVDSPHKVYAGNLGWDLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAEN 272
Query: 270 LQSALDAMNGV 280
+QSAL MNGV
Sbjct: 273 VQSALATMNGV 283
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + +TS L + F + V A+++Y+R T RSRGFGF++ S E +
Sbjct: 216 DSPHKVYAGNLGWDLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A+ +G ++ GR +++N
Sbjct: 276 ALATMNGVEVEGRALRLNL 294
>gi|356537206|ref|XP_003537120.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 298
Score = 263 bits (671), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 140/263 (53%), Positives = 179/263 (68%), Gaps = 28/263 (10%)
Query: 18 LYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQV 77
+ N+ P +PS KPL L NP S LSLS + F S FQ
Sbjct: 17 ICNISLTFNFPHTLIPS-------KPLNL----NPQLFFASPLSLSLY-HFPLSSLSFQ- 63
Query: 78 TEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAG 137
D+Q + E ++ EP + +++++RL+VGNLPYS+ SS LA+ F EAG
Sbjct: 64 --DTQKPLQRE---------TFQKPEPNASHTNQSSRLFVGNLPYSLLSSQLAQRFGEAG 112
Query: 138 TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGER 197
V S EIVYD + DRSRGF FVTMGS+E+A+ AIR+FDGS+IGGR +KVNF +P+ G+R
Sbjct: 113 NVVSVEIVYDDIMDRSRGFAFVTMGSMEDAERAIRMFDGSEIGGRIMKVNFTAIPKRGKR 172
Query: 198 AAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSR 257
MG ++Y+GFVDSPHKIYAGNLGWGLTSQ LRDAF QPG LSAKVI+ER +GRSR
Sbjct: 173 LVMG----SNYRGFVDSPHKIYAGNLGWGLTSQDLRDAFAEQPGFLSAKVIYERNSGRSR 228
Query: 258 GFGFVTFETAEDLQSALDAMNGV 280
G+GFV+FETAED+++AL++MNGV
Sbjct: 229 GYGFVSFETAEDVEAALNSMNGV 251
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + +TS L + FAE SA+++Y+R + RSRG+GFV+ + E+ +
Sbjct: 184 DSPHKIYAGNLGWGLTSQDLRDAFAEQPGFLSAKVIYERNSGRSRGYGFVSFETAEDVEA 243
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A+ +G ++ GR +++N
Sbjct: 244 ALNSMNGVEVQGRPLRLNL 262
>gi|296089370|emb|CBI39142.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/157 (77%), Positives = 140/157 (89%)
Query: 124 MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183
MTSS L +VF EAG+V S EIVYDRVTDRSRGF FVTMGSV+EAKEAIR+FDGSQ+GGRT
Sbjct: 1 MTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFDGSQVGGRT 60
Query: 184 VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL 243
VKVNFPEVPRGGERA MGPK+++SY+GFVDSP+KIYAGNL W LTS+GLRDAF PGLL
Sbjct: 61 VKVNFPEVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAFADHPGLL 120
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
AKVI+ER +GRSRGFGF++F +AE+ +SAL+AMN V
Sbjct: 121 GAKVIYERESGRSRGFGFLSFASAENAESALNAMNEV 157
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 104 PKVAAS-----DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
PK+ +S D ++Y GNL + +TS L + FA+ + A+++Y+R + RSRGFGF
Sbjct: 79 PKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGF 138
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191
++ S E A+ A+ + ++ GR +++N V
Sbjct: 139 LSFASAENAESALNAMNEVEVEGRPLRLNLAAV 171
>gi|388506424|gb|AFK41278.1| unknown [Lotus japonicus]
Length = 199
Score = 253 bits (645), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 114/157 (72%), Positives = 137/157 (87%)
Query: 124 MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183
MTSS L E+F EAGTV S E++YDRVTDRSRGF FVTMGSV++AKEAIR+FDGSQ+GGR
Sbjct: 1 MTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRI 60
Query: 184 VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL 243
V+VNFPEVP+GGER MGPK++N+ + FVDS HKIYAGNLGW ++SQ L+D F QPGL+
Sbjct: 61 VRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLV 120
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
SAKVI+ER +GRSRGFGFVTFETA+D+++AL MNGV
Sbjct: 121 SAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGV 157
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 55/82 (67%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + ++Y GNL + ++S L +VFAE + SA+++Y+R + RSRGFGFVT + ++ +
Sbjct: 90 DSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEA 149
Query: 170 AIRLFDGSQIGGRTVKVNFPEV 191
A++ +G ++ GR +++N V
Sbjct: 150 ALKTMNGVEVQGRELRLNLAAV 171
>gi|357440093|ref|XP_003590324.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479372|gb|AES60575.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 311
Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 114/174 (65%), Positives = 145/174 (83%), Gaps = 4/174 (2%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S ++ RL+VGNLP+S++SS LA++F EAG V S EI+YD +T+RSRGF FVTMG+VE+
Sbjct: 102 AESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVED 161
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+EAIR+FDG+ +GGR +KVNFPEVP G+R MG ++Y+G+VDSPHKIYAGNLGW
Sbjct: 162 AEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMG----STYRGYVDSPHKIYAGNLGWD 217
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+TSQ LR AF QPGLLSAKV++ER G+SRG+GFV+FETAED++ AL AMNGV
Sbjct: 218 MTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGV 271
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 49/77 (63%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + MTS L + FA+ + SA++VY+R +SRG+GFV+ + E+ +
Sbjct: 204 DSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEV 263
Query: 170 AIRLFDGSQIGGRTVKV 186
A+ +G ++ GR +++
Sbjct: 264 ALSAMNGVEVQGRPLRL 280
>gi|118487510|gb|ABK95582.1| unknown [Populus trichocarpa]
Length = 198
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 116/156 (74%), Positives = 138/156 (88%)
Query: 124 MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183
MTSS LAEVF EAG V AE++ DRVTDRSRGFGFVTM SVEEAKEAIR+F+GSQ+GGRT
Sbjct: 1 MTSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRMFNGSQVGGRT 60
Query: 184 VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL 243
++VNFPEVPRGGER M P++++ Y+GF+DS HKIYAGNLGW LTS+GL DAF QPGLL
Sbjct: 61 LRVNFPEVPRGGEREVMEPRIRSGYKGFIDSEHKIYAGNLGWRLTSEGLGDAFANQPGLL 120
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
SAKVI+ER TGRSRGFGFV+F++AE+ ++AL+AMNG
Sbjct: 121 SAKVIYERDTGRSRGFGFVSFDSAENAEAALEAMNG 156
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 10/117 (8%)
Query: 103 EPKVAAS-----DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
EP++ + D ++Y GNL + +TS L + FA + SA+++Y+R T RSRGFG
Sbjct: 78 EPRIRSGYKGFIDSEHKIYAGNLGWRLTSEGLGDAFANQPGLLSAKVIYERDTGRSRGFG 137
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDS 214
FV+ S E A+ A+ +G ++ GR +++N GER+ P +N+ + ++S
Sbjct: 138 FVSFDSAENAEAALEAMNGEEVDGRPLRLNL-----AGERSYPPPAKENNTEDNLES 189
>gi|242047468|ref|XP_002461480.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
gi|241924857|gb|EER98001.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
Length = 338
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 135/173 (78%), Gaps = 8/173 (4%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D+ RL+VGNLPY+ TS LA+VFAEAG V A+I+YD+VT+RSRGF FVTM + EEA +
Sbjct: 107 DDPGRLFVGNLPYTYTSEELAQVFAEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAK 166
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGER--AAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
AI++FDG+ +GGRT +VN+PEVPRGGER M + ++ D +KIYAGNLGWG+
Sbjct: 167 AIQMFDGALLGGRTARVNYPEVPRGGERRTVTMAGRRRD------DGTYKIYAGNLGWGV 220
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ LR+ F+G+ GLL A+VIFER TGRSRGFGFV+F TAED Q+AL+A++GV
Sbjct: 221 RADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFRTAEDAQAALEALDGV 273
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L VF + A ++++R T RSRGFGFV+ + E+A+
Sbjct: 206 DGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFRTAEDAQA 265
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
A+ DG ++ GR ++++ E
Sbjct: 266 ALEALDGVELEGRPLRLSLAE 286
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
D P +++ GNL + TS+ L F + A++I+++ T RSRGF FVT TAE+
Sbjct: 107 DDPGRLFVGNLPYTYTSEELAQVFAEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAK 166
Query: 273 ALDAMNGVV 281
A+ +G +
Sbjct: 167 AIQMFDGAL 175
>gi|357111564|ref|XP_003557582.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 354
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/177 (55%), Positives = 135/177 (76%), Gaps = 1/177 (0%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ A E R+YVGNLPY+ T++ L VF+EAG+V +I+YD++TDRSRGF FVTM +
Sbjct: 113 RPALGQEPGRIYVGNLPYTFTAAELTSVFSEAGSVDDVQIIYDKITDRSRGFAFVTMATA 172
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGER-AAMGPKLQNSYQGFVDSPHKIYAGNL 223
EEA +A+++F+G+ +GGRT++VNFPEVPRGGER A + S + D +K+YAGNL
Sbjct: 173 EEAAKAVQMFNGALLGGRTIRVNFPEVPRGGERAVASAAAAKTSLRVVDDGTYKVYAGNL 232
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
GWG+ + L+ AF+GQPGLL ++VIFER TGRSRGFGFV+F+T ED +A+ AM+GV
Sbjct: 233 GWGVRADALKTAFEGQPGLLGSRVIFERDTGRSRGFGFVSFQTLEDANAAIQAMDGV 289
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L F + + ++++R T RSRGFGFV+ ++E+A
Sbjct: 222 DGTYKVYAGNLGWGVRADALKTAFEGQPGLLGSRVIFERDTGRSRGFGFVSFQTLEDANA 281
Query: 170 AIRLFDGSQIGGRTVKVNF 188
AI+ DG ++ GR ++++
Sbjct: 282 AIQAMDGVELDGRPLRLSL 300
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
P +IY GNL + T+ L F + ++I+++ T RSRGF FVT TAE+ A+
Sbjct: 120 PGRIYVGNLPYTFTAAELTSVFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAV 179
Query: 275 DAMNGVV 281
NG +
Sbjct: 180 QMFNGAL 186
>gi|195611722|gb|ACG27691.1| ribonucleoprotein [Zea mays]
Length = 341
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/171 (59%), Positives = 134/171 (78%), Gaps = 4/171 (2%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D+ RL+VGNLPY+ TS LA+VF+EAG V A+I+YD+VT+RSRGF FVTM + EEA +
Sbjct: 109 DDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAK 168
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI++FDG+ +GGRT +VN+PEVPRGGER + S + D +KIYAGNLGWG+ +
Sbjct: 169 AIQMFDGALLGGRTARVNYPEVPRGGERRT----VTMSGRRRDDGTYKIYAGNLGWGVRA 224
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
LR+ F+G+ GLL A+VIFER TGRSRGFGFV+F TAED Q+AL++++GV
Sbjct: 225 DTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALESLDGV 275
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L VF + A ++++R T RSRGFGFV+ + E+A+
Sbjct: 208 DGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQA 267
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
A+ DG ++ GR ++++ E
Sbjct: 268 ALESLDGVELEGRPLRLSLAE 288
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
D P +++ GNL + TS+ L F + A++I+++ T RSRGF FVT TAE+
Sbjct: 109 DDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAK 168
Query: 273 ALDAMNGVV 281
A+ +G +
Sbjct: 169 AIQMFDGAL 177
>gi|226497258|ref|NP_001140274.1| uncharacterized protein LOC100272318 [Zea mays]
gi|194698792|gb|ACF83480.1| unknown [Zea mays]
gi|414883568|tpg|DAA59582.1| TPA: ribonucleoprotein [Zea mays]
Length = 341
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 102/171 (59%), Positives = 134/171 (78%), Gaps = 4/171 (2%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D+ RL+VGNLPY+ TS LA+VF+EAG V A+I+YD+VT+RSRGF FVTM + EEA +
Sbjct: 109 DDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAK 168
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI++FDG+ +GGRT +VN+PEVPRGGER + S + D +KIYAGNLGWG+ +
Sbjct: 169 AIQMFDGALLGGRTARVNYPEVPRGGERRT----VTMSGRRRDDGTYKIYAGNLGWGVRA 224
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
LR+ F+G+ GLL A+VIFER TGRSRGFGFV+F TAED Q+AL++++GV
Sbjct: 225 DTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALESLDGV 275
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 50/81 (61%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L VF + A ++++R T RSRGFGFV+ + E+A+
Sbjct: 208 DGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQA 267
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
A+ DG ++ GR+++++ E
Sbjct: 268 ALESLDGVELEGRSLRLSLAE 288
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
D P +++ GNL + TS+ L F + A++I+++ T RSRGF FVT TAE+
Sbjct: 109 DDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAK 168
Query: 273 ALDAMNGVV 281
A+ +G +
Sbjct: 169 AIQMFDGAL 177
>gi|326511132|dbj|BAJ87580.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 99/177 (55%), Positives = 134/177 (75%), Gaps = 1/177 (0%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ A E R+YVGNLPY+ T++ L F+EAG+V +I+YD++TDRSRGF FVTM +
Sbjct: 100 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATA 159
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFV-DSPHKIYAGNL 223
EEA +A+++F+G+ +GGRTV+VNFPEVPRGGERA + + V D +K+YAGNL
Sbjct: 160 EEAAKAVQMFNGALLGGRTVRVNFPEVPRGGERAVASAAVARTSLRVVDDGTYKVYAGNL 219
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
GWG+ + L+ AF+GQPGL+ A+VIFER TGRSRGFGFV+F T +D ++AL AM+GV
Sbjct: 220 GWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGV 276
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 49/79 (62%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L F + A ++++R T RSRGFGFV+ ++++AK
Sbjct: 209 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 268
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A++ DG ++ GR ++++
Sbjct: 269 ALQAMDGVELDGRPLRLSL 287
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
P +IY GNL + T+ L AF + ++I+++ T RSRGF FVT TAE+ A+
Sbjct: 107 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAV 166
Query: 275 DAMNGVV 281
NG +
Sbjct: 167 QMFNGAL 173
>gi|3550485|emb|CAA11894.1| cp33Hv [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 99/177 (55%), Positives = 134/177 (75%), Gaps = 1/177 (0%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ A E R+YVGNLPY+ T++ L F+EAG+V +I+YD++TDRSRGF FVTM +
Sbjct: 100 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATA 159
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFV-DSPHKIYAGNL 223
EEA +A+++F+G+ +GGRTV+VNFPEVPRGGERA + + V D +K+YAGNL
Sbjct: 160 EEAAKAVQMFNGALLGGRTVRVNFPEVPRGGERAVASAAVARTSLRVVDDGTYKVYAGNL 219
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
GWG+ + L+ AF+GQPGL+ A+VIFER TGRSRGFGFV+F T +D ++AL AM+GV
Sbjct: 220 GWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGV 276
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 49/79 (62%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L F + A ++++R T RSRGFGFV+ ++++AK
Sbjct: 209 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 268
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A++ DG ++ GR ++++
Sbjct: 269 ALQAMDGVELDGRPLRLSL 287
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
P +IY GNL + T+ L AF + ++I+++ T RSRGF FVT TAE+ A+
Sbjct: 107 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAV 166
Query: 275 DAMNGVV 281
NG +
Sbjct: 167 QMFNGAL 173
>gi|115470657|ref|NP_001058927.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|34394882|dbj|BAC84331.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|113610463|dbj|BAF20841.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|125557292|gb|EAZ02828.1| hypothetical protein OsI_24955 [Oryza sativa Indica Group]
gi|215695203|dbj|BAG90394.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740788|dbj|BAG96944.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 348
Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 104/176 (59%), Positives = 134/176 (76%), Gaps = 1/176 (0%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ A E RL+VGNLPY+MTS +++ F+EAG V + +I+YD+VTDRSRGF FVTM +
Sbjct: 110 RPALGQEPGRLFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATA 169
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
EEA AI++F+G+ +GGRT +VN+PEVPRGGER A+G D KIYAGNLG
Sbjct: 170 EEAATAIQMFNGALLGGRTARVNYPEVPRGGER-AVGSAAATRENRRDDGTFKIYAGNLG 228
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
WG+ + LR AF+GQPGLL A+VIFER +GRSRGFGFV+F TAED Q+AL+A++GV
Sbjct: 229 WGVRADALRAAFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDGV 284
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L F + A ++++R + RSRGFGFV+ + E+A+
Sbjct: 217 DGTFKIYAGNLGWGVRADALRAAFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQA 276
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
A+ DG ++ GR ++++ E
Sbjct: 277 ALEALDGVELEGRPLRLSMAE 297
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
P +++ GNL + +TS + F + + ++I+++ T RSRGF FVT TAE+ +A+
Sbjct: 117 PGRLFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAI 176
Query: 275 DAMNGVV 281
NG +
Sbjct: 177 QMFNGAL 183
>gi|116793682|gb|ABK26841.1| unknown [Picea sitchensis]
Length = 347
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 139/197 (70%), Gaps = 8/197 (4%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
E E E + E+E+VE ++ P + E +LYVGNLP+ + S LA++F E+G V E++
Sbjct: 135 EEEPESKPEQESVEGQDYPPLP---EGTKLYVGNLPFDIDSEGLAKMFDESGVVEMVEVI 191
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR--GGERAAMGPK 203
YDR + RSRGF FVTM +VEEA+ AI+ F+G +I GR+++VNFPEVPR G A P
Sbjct: 192 YDRSSGRSRGFAFVTMSTVEEAEAAIKKFNGFEIDGRSLRVNFPEVPRLQNGRSPARSP- 250
Query: 204 LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263
+++ GFVDSPHK+Y GNL W +TS+ LR+A G+ +L AKVI +R TGRSRGFGFV+
Sbjct: 251 --SNFGGFVDSPHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVS 308
Query: 264 FETAEDLQSALDAMNGV 280
F + ++++A+ M+G+
Sbjct: 309 FSSEAEVEAAVSEMDGL 325
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL +S+TS +L E G V A+++ DR T RSRGFGFV+ S E +
Sbjct: 258 DSPHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEA 317
Query: 170 AIRLFDGSQIGGRTVKVN 187
A+ DG ++ GR+++VN
Sbjct: 318 AVSEMDGLEVEGRSIRVN 335
>gi|116781814|gb|ABK22250.1| unknown [Picea sitchensis]
Length = 355
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 139/197 (70%), Gaps = 8/197 (4%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
E E E + E+E+VE ++ P + E +LYVGNLP+ + S LA++F E+G V E++
Sbjct: 143 EEEPESKPEQESVEGQDYPPLP---EGTKLYVGNLPFDIDSEGLAKMFDESGVVEMVEVI 199
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR--GGERAAMGPK 203
YDR + RSRGF FVTM +VEEA+ AI+ F+G +I GR+++VNFPEVPR G A P
Sbjct: 200 YDRSSGRSRGFAFVTMSTVEEAEAAIKKFNGFEIDGRSLRVNFPEVPRLQNGRSPARSP- 258
Query: 204 LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263
+++ GFVDSPHK+Y GNL W +TS+ LR+A G+ +L AKVI +R TGRSRGFGFV+
Sbjct: 259 --SNFGGFVDSPHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVS 316
Query: 264 FETAEDLQSALDAMNGV 280
F + ++++A+ M+G+
Sbjct: 317 FSSEAEVEAAVSEMDGL 333
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL +S+TS +L E G V A+++ DR T RSRGFGFV+ S E +
Sbjct: 266 DSPHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEA 325
Query: 170 AIRLFDGSQIGGRTVKVN 187
A+ DG ++ GR+++VN
Sbjct: 326 AVSEMDGLEVEGRSIRVN 343
>gi|414883567|tpg|DAA59581.1| TPA: hypothetical protein ZEAMMB73_267259 [Zea mays]
Length = 385
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 134/215 (62%), Gaps = 48/215 (22%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D+ RL+VGNLPY+ TS LA+VF+EAG V A+I+YD+VT+RSRGF FVTM + EEA +
Sbjct: 109 DDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAK 168
Query: 170 AIRLFDGSQ--------------------------------------------IGGRTVK 185
AI++FDG+ +GGRT +
Sbjct: 169 AIQMFDGAVSTAPANWISTSTPHRIGILLLPMNVQACVLTSDRSLAHSSPMQLLGGRTAR 228
Query: 186 VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSA 245
VN+PEVPRGGER + S + D +KIYAGNLGWG+ + LR+ F+G+ GLL A
Sbjct: 229 VNYPEVPRGGERRT----VTMSGRRRDDGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDA 284
Query: 246 KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+VIFER TGRSRGFGFV+F TAED Q+AL++++GV
Sbjct: 285 RVIFERETGRSRGFGFVSFSTAEDAQAALESLDGV 319
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 50/81 (61%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L VF + A ++++R T RSRGFGFV+ + E+A+
Sbjct: 252 DGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQA 311
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
A+ DG ++ GR+++++ E
Sbjct: 312 ALESLDGVELEGRSLRLSLAE 332
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
D P +++ GNL + TS+ L F + A++I+++ T RSRGF FVT TAE+
Sbjct: 109 DDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAK 168
Query: 273 ALDAMNGVV 281
A+ +G V
Sbjct: 169 AIQMFDGAV 177
>gi|125599171|gb|EAZ38747.1| hypothetical protein OsJ_23149 [Oryza sativa Japonica Group]
Length = 220
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 94/157 (59%), Positives = 121/157 (77%), Gaps = 1/157 (0%)
Query: 124 MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183
MTS +++ F+EAG V + +I+YD+VTDRSRGF FVTM + EEA AI++F+G+ +GGRT
Sbjct: 1 MTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAIQMFNGALLGGRT 60
Query: 184 VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL 243
+VN+PEVPRGGER A+G D KIYAGNLGWG+ + LR AF+GQPGLL
Sbjct: 61 ARVNYPEVPRGGER-AVGSAAATRENRRDDGTFKIYAGNLGWGVRADALRAAFEGQPGLL 119
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
A+VIFER +GRSRGFGFV+F TAED Q+AL+A++GV
Sbjct: 120 DARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDGV 156
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 47/77 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++Y GNL + + + +L F + A ++++R + RSRGFGFV+ + E+A+ A+
Sbjct: 93 KIYAGNLGWGVRADALRAAFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEA 152
Query: 174 FDGSQIGGRTVKVNFPE 190
DG ++ GR ++++ E
Sbjct: 153 LDGVELEGRPLRLSMAE 169
>gi|414883566|tpg|DAA59580.1| TPA: hypothetical protein ZEAMMB73_267259 [Zea mays]
Length = 277
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 108/137 (78%), Gaps = 4/137 (2%)
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
I+YD+VT+RSRGF FVTM + EEA +AI++FDG+ +GGRT +VN+PEVPRGGER
Sbjct: 79 IIYDKVTNRSRGFAFVTMATAEEAAKAIQMFDGALLGGRTARVNYPEVPRGGERRT---- 134
Query: 204 LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263
+ S + D +KIYAGNLGWG+ + LR+ F+G+ GLL A+VIFER TGRSRGFGFV+
Sbjct: 135 VTMSGRRRDDGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVS 194
Query: 264 FETAEDLQSALDAMNGV 280
F TAED Q+AL++++GV
Sbjct: 195 FSTAEDAQAALESLDGV 211
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 50/81 (61%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L VF + A ++++R T RSRGFGFV+ + E+A+
Sbjct: 144 DGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQA 203
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
A+ DG ++ GR+++++ E
Sbjct: 204 ALESLDGVELEGRSLRLSLAE 224
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 247 VIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+I+++ T RSRGF FVT TAE+ A+ +G +
Sbjct: 79 IIYDKVTNRSRGFAFVTMATAEEAAKAIQMFDGAL 113
>gi|357440095|ref|XP_003590325.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479373|gb|AES60576.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 156
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 101/120 (84%), Gaps = 4/120 (3%)
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYA 220
MG+VE+A+EAIR+FDG+ +GGR +KVNFPEVP G+R MG ++Y+G+VDSPHKIYA
Sbjct: 1 MGNVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMG----STYRGYVDSPHKIYA 56
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
GNLGW +TSQ LR AF QPGLLSAKV++ER G+SRG+GFV+FETAED++ AL AMNGV
Sbjct: 57 GNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGV 116
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + MTS L + FA+ + SA++VY+R +SRG+GFV+ + E+ +
Sbjct: 49 DSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEV 108
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A+ +G ++ GR +++
Sbjct: 109 ALSAMNGVEVQGRPLRLKL 127
>gi|414887732|tpg|DAA63746.1| TPA: hypothetical protein ZEAMMB73_977373 [Zea mays]
Length = 267
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 115/173 (66%), Gaps = 3/173 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +L+VGNLP+S+ S+ LA +F +AG+V E+VYDR+T RSRGFGFVTM S EEA A
Sbjct: 75 EDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAA 134
Query: 171 IRLFDGSQIGGRTVKVNF-PEVPRGGE--RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ F+G GR ++VN P PR G RA G FVDS +K+Y GNL WG+
Sbjct: 135 VEQFNGYTFQGRPLRVNCGPPPPRDGSAPRAPRGGGGGGGGGSFVDSGNKVYVGNLAWGV 194
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ L + F Q +L AKVI++R +GRSRGFGFVT+ +AE++ +A+ ++G+
Sbjct: 195 DNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAISNLDGI 247
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL + + +S+L +F+E G V A+++YDR + RSRGFGFVT GS EE
Sbjct: 180 DSGNKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNN 239
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
AI DG + GR ++V E
Sbjct: 240 AISNLDGIDLDGRQIRVTVAE 260
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B, chloroplastic; AltName:
Full=CP29B; Flags: Precursor
gi|14135|emb|CAA43428.1| 29kD B ribonucleoprotein [Nicotiana sylvestris]
Length = 291
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 130/206 (63%), Gaps = 20/206 (9%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
++ E+ VE E+P+ + E +L+VGNLP+S+ S++LA +F AG V E++YD++T
Sbjct: 69 DQLEDDVEVAEQPRFS---EDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTG 125
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP-----------RGGERAAM 200
RSRGFGFVTM + EE + A + F+G +I GR ++VN P RGG +
Sbjct: 126 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYG 185
Query: 201 GPKLQNSYQG------FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTG 254
G + NS G VDS +++Y GNL WG+ L++ F Q ++ AKV+++R +G
Sbjct: 186 GGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSG 245
Query: 255 RSRGFGFVTFETAEDLQSALDAMNGV 280
RSRGFGFVT+ +++++ A+D++NGV
Sbjct: 246 RSRGFGFVTYSSSKEVNDAIDSLNGV 271
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + R+YVGNL + + +L E+F+E G V A++VYDR + RSRGFGFVT S +E +
Sbjct: 204 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVND 263
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
AI +G + GR+++V+ E
Sbjct: 264 AIDSLNGVDLDGRSIRVSAAE 284
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP31; Flags: Precursor
gi|19710|emb|CAA46233.1| RNA binding protein 31 [Nicotiana plumbaginifolia]
Length = 292
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 130/206 (63%), Gaps = 20/206 (9%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
++ E+ VE E+P+ + E +L+VGNLP+S+ S++LA +F AG V E++YD+++
Sbjct: 70 DQLEDDVEVAEQPRFS---EDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSG 126
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP-----------RGGERAAM 200
RSRGFGFVTM + EE + A + F+G +I GR ++VN P RGG +
Sbjct: 127 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYG 186
Query: 201 GPKLQNSYQG------FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTG 254
G + NS G VDS +++Y GNL WG+ L++ F Q ++ AKV+++R +G
Sbjct: 187 GGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSG 246
Query: 255 RSRGFGFVTFETAEDLQSALDAMNGV 280
RSRGFGFVT+ +A+++ A+D++NG+
Sbjct: 247 RSRGFGFVTYSSAKEVNDAIDSLNGI 272
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + R+YVGNL + + +L E+F+E G V A++VYDR + RSRGFGFVT S +E +
Sbjct: 205 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVND 264
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
AI +G + GR+++V+ E
Sbjct: 265 AIDSLNGIDLDGRSIRVSAAE 285
>gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
gi|241924453|gb|EER97597.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
Length = 268
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 111/170 (65%), Gaps = 3/170 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNLP+S+ S+ LA +F +AG+V E+VYDR+T RSRGFGFVTM S EEA A+
Sbjct: 79 KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQ 138
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK---LQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
F+G GR ++VN P E A P+ FVDS +K+Y GNL WG+ +
Sbjct: 139 FNGYTFQGRPLRVNCGPPPPRDESAPRAPRGGGGGGGGGSFVDSANKVYVGNLAWGVDNS 198
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L + F Q +L AKVI++R +GRSRGFGFVT+ TA ++ +A+ ++G+
Sbjct: 199 TLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNAISNLDGI 248
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D A ++YVGNL + + +S+L +F+E G V A+++YDR + RSRGFGFVT G+ E
Sbjct: 181 DSANKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNN 240
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
AI DG + GR ++V E
Sbjct: 241 AISNLDGIDLDGRQIRVTVAE 261
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
gi|222868100|gb|EEF05231.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 124/184 (67%), Gaps = 9/184 (4%)
Query: 101 EEEPKVAASDEAA-----RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRG 155
+EE ++ DE + +L+VGNLP+++ S+ LA +F AG V E++YD+VT RSRG
Sbjct: 73 QEEDFLSDGDEQSFSQDLKLFVGNLPFNVDSARLAGLFETAGNVEMVEVIYDKVTGRSRG 132
Query: 156 FGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP 215
FGFVTM ++EE + A + F+G ++ GRT++VNF P+ + GP+ ++ DS
Sbjct: 133 FGFVTMTTIEEVEAASKQFNGYELDGRTLRVNFGPPPQKESSFSRGPRGGETF----DSG 188
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+++Y GNL W + + L F+ + ++ AKV+++R +GRSRGFGFVT+ +AE++ +A+D
Sbjct: 189 NRVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNAID 248
Query: 276 AMNG 279
++NG
Sbjct: 249 SLNG 252
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D R+YVGNL +++ + +L +F E G V A++VYDR + RSRGFGFVT S EE
Sbjct: 186 DSGNRVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDN 245
Query: 170 AIRLFDGSQIGGRTVKVNFPEV-PR 193
AI +G+++ GR ++V+ E PR
Sbjct: 246 AIDSLNGAELDGRAIRVSVAEAKPR 270
>gi|413939453|gb|AFW74004.1| hypothetical protein ZEAMMB73_282165 [Zea mays]
Length = 287
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 121/197 (61%), Gaps = 16/197 (8%)
Query: 88 EQEEEEEEEAV----EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
EQ+E +EE A ++ P VAAS +LY GNLPY+ S+ LA + E + E
Sbjct: 87 EQDEVQEEGAAVGASSDDSGPSVAASTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVE 146
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
++YDR T RSRGF FVTM +V++ + I+ DGS GGRT+KVNF + P+ + A+ P
Sbjct: 147 VLYDRTTGRSRGFAFVTMTTVQDCELVIKNLDGSLYGGRTMKVNFADRPK--PKQALYP- 203
Query: 204 LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263
++ HK++ GNL W +TS+ L +AF ++ A+V+++ TGRSRG+GFV
Sbjct: 204 ---------ETEHKLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVC 254
Query: 264 FETAEDLQSALDAMNGV 280
+ T E++ AL ++NG+
Sbjct: 255 YSTREEMDEALSSLNGM 271
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 103 EPKVAASDEA-ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+PK A E +L+VGNL +++TS L E F GTV A ++YD T RSRG+GFV
Sbjct: 196 KPKQALYPETEHKLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCY 255
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNF 188
+ EE EA+ +G ++ GR ++VN
Sbjct: 256 STREEMDEALSSLNGMEMEGREMRVNL 282
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
gi|297311615|gb|EFH42039.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 141/256 (55%), Gaps = 19/256 (7%)
Query: 32 LPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEE 91
LPS+ S KP + P ++L L S + S+ F + D PE E+ E
Sbjct: 26 LPSISTISSSKPHHSNFSLPPRPINLPLSLKSKTLRNSSPIVTF--VSQTSDWPEEEEGE 83
Query: 92 EEE--------EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
+ +E+ + E+ K E A+L+VGNLPY + S +LA +F +AGTV +E
Sbjct: 84 DGSIGGTSVTVDESFDTEDGGKFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISE 143
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
++Y+R TD+SRGFGFVTM +VEEAK+A+ F+ ++ GR + VN PRG R P+
Sbjct: 144 VIYNRDTDQSRGFGFVTMSTVEEAKKAVEKFNRYEVNGRLLTVNI-AAPRGS-RPERQPR 201
Query: 204 LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263
D+ +IY GNL W + + L+ F ++ A+V+++R TGRSRGFGFVT
Sbjct: 202 Q-------YDAAFRIYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFVT 254
Query: 264 FETAEDLQSALDAMNG 279
++ A+ A++G
Sbjct: 255 MSNENEVNDAIAALDG 270
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D A R+YVGNLP+ + + L +VF+E G V A +VYDR T RSRGFGFVTM + E +
Sbjct: 204 DAAFRIYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFVTMSNENEVND 263
Query: 170 AIRLFDGSQIGGRTVKVNFP-EVPRGG 195
AI DG + GR +KVN E PR G
Sbjct: 264 AIAALDGQNLEGRAIKVNVAEERPRRG 290
>gi|219363077|ref|NP_001137027.1| uncharacterized protein LOC100217196 [Zea mays]
gi|194698058|gb|ACF83113.1| unknown [Zea mays]
Length = 287
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 121/197 (61%), Gaps = 16/197 (8%)
Query: 88 EQEEEEEEEAV----EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
EQ+E +EE A ++ P VAAS +LY GNLPY+ S+ LA + E + E
Sbjct: 87 EQDEVQEEGAAVGASSDDSGPSVAASTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVE 146
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
++YDR T RSRGF FVTM +V++ + I+ DGS GGRT+KVNF + P+ + A+ P
Sbjct: 147 VLYDRTTGRSRGFAFVTMTTVQDCELVIKNLDGSLYGGRTMKVNFADRPK--PKQALYP- 203
Query: 204 LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263
++ HK++ GNL W +TS+ L +AF ++ A+V+++ TGRSRG+GFV
Sbjct: 204 ---------ETEHKLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVC 254
Query: 264 FETAEDLQSALDAMNGV 280
+ T E++ AL ++NG+
Sbjct: 255 YSTREEMDEALSSLNGM 271
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++TS L E F GTV A ++YD T RSRG+GFV + EE EA+
Sbjct: 208 KLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSS 267
Query: 174 FDGSQIGGRTVKVNF 188
+G ++ GR ++VN
Sbjct: 268 LNGMEMEGREMRVNL 282
>gi|326510421|dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510771|dbj|BAJ91733.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 113/172 (65%), Gaps = 2/172 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +++VGNLP+++ S+ LA +F +AG+V E+VYDR+T RSRGFGFVTMGSVEE A
Sbjct: 85 EDLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAA 144
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF--VDSPHKIYAGNLGWGLT 228
+ F+G GR ++VN P E A P+ G DS +K+Y GNL WG+
Sbjct: 145 VEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMGGGGGGGSFDSANKLYVGNLSWGVD 204
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ L + F Q +L AKVI++R +GRSRGFGFVT+ +A+++ +A+ ++GV
Sbjct: 205 NSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGV 256
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D A +LYVGNL + + +S+L +F+E G V A+++YDR + RSRGFGFVT GS +E
Sbjct: 189 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 248
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
AI DG + GR ++V E
Sbjct: 249 AISNLDGVDLDGRQIRVTVAE 269
>gi|242063480|ref|XP_002453029.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
gi|241932860|gb|EES06005.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
Length = 295
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 123/199 (61%), Gaps = 16/199 (8%)
Query: 85 PETEQEEEEEEEAVE---EEEEPKVAASDEAA-RLYVGNLPYSMTSSSLAEVFAEAGTVA 140
PE ++ ++ E AVE ++ P VAAS +LY GNLPY+ S+ LA + E +
Sbjct: 92 PEQDEVQDGEGGAVEGSSQDSRPSVAASTTTTTKLYFGNLPYNCDSAQLAGIVQEYASPE 151
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
E++YDR+T RSRGF FVTM +V++ + I+ DGS GGRT+KVNF + P+
Sbjct: 152 MVEVLYDRITGRSRGFAFVTMTTVQDCELVIKNLDGSLYGGRTMKVNFADRPK------- 204
Query: 201 GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFG 260
PKL + ++ HK++ GNL W +TS+ L +AF ++ A+V+++ TGRSRG+G
Sbjct: 205 -PKLPL----YPETEHKLFVGNLSWTVTSEMLTEAFGRCGNVVGARVLYDGETGRSRGYG 259
Query: 261 FVTFETAEDLQSALDAMNG 279
FV + T E++ A+ ++NG
Sbjct: 260 FVCYSTKEEMDEAISSLNG 278
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++TS L E F G V A ++YD T RSRG+GFV + EE EAI
Sbjct: 216 KLFVGNLSWTVTSEMLTEAFGRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEAISS 275
Query: 174 FDGSQIGGRTVKVNF 188
+G+++ GR ++VN
Sbjct: 276 LNGTELEGREIRVNL 290
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 129/210 (61%), Gaps = 32/210 (15%)
Query: 93 EEEEAVEEEEEPKVAASDEAA-----------RLYVGNLPYSMTSSSLAEVFAEAGTVAS 141
EE EA +++EE + SDE A +++VGNLP+S+ S++LAE+F AG V
Sbjct: 69 EEVEAGDDDEE-EGGLSDEGASYEERNANPDLKIFVGNLPFSVDSAALAELFERAGDVEM 127
Query: 142 AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMG 201
E++YD++T RSRGFGFVTM S E + A + F+G +I GR ++VN P
Sbjct: 128 VEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQFNGYEIDGRALRVNSGPAP--------- 178
Query: 202 PKLQN------SYQ-----GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 250
PK +N SYQ G +DS +++Y GNL W + Q L F Q ++ AKV+++
Sbjct: 179 PKRENSFGDNSSYQGGRGGGSMDSSNRVYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYD 238
Query: 251 RYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
R +GRSRGFGFVT+ +A+++ A+++++GV
Sbjct: 239 RDSGRSRGFGFVTYSSAKEVNDAIESLDGV 268
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 52/78 (66%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + R+YVGNL +S+ L +F+E G V A++VYDR + RSRGFGFVT S +E +
Sbjct: 201 DSSNRVYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVND 260
Query: 170 AIRLFDGSQIGGRTVKVN 187
AI DG +GGR ++V+
Sbjct: 261 AIESLDGVDLGGRAIRVS 278
>gi|356533254|ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 275
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 111/170 (65%), Gaps = 3/170 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNLP+++ S+ LAE+F AG V E++YD+ T RSRGFGFVTM SVEEA+ A +
Sbjct: 87 KLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQ 146
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFV---DSPHKIYAGNLGWGLTSQ 230
F+G ++ GR ++VN P E A + DS ++++ NL WG+ +
Sbjct: 147 FNGYELDGRALRVNSGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVSNLAWGVDNV 206
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L+ F+ Q +L A+VI++R +GRSRGFGFVTF + +++ SA+ ++NGV
Sbjct: 207 ALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLNGV 256
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SD R++V NL + + + +L +F E G V A ++YDR + RSRGFGFVT S +E
Sbjct: 188 SDSENRVHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVN 247
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI+ +G + GR ++V+
Sbjct: 248 SAIQSLNGVDLNGRAIRVSL 267
>gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays]
gi|195649373|gb|ACG44154.1| ribonucleoprotein A [Zea mays]
gi|414591006|tpg|DAA41577.1| TPA: ribonucleoprotein A [Zea mays]
Length = 268
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 10/199 (5%)
Query: 84 EPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
E +TE E+E E+ EE E +L+VGNLP+S+ S+ LA +F +AG+V E
Sbjct: 58 EYKTEGAEQEGEDGSEE--------FSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVE 109
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
+VYDR+T RSRGFGFVTM S EEA+ A+ F+G GR ++VN P E P+
Sbjct: 110 VVYDRMTGRSRGFGFVTMSSAEEAEAAVEQFNGYAFQGRQLRVNCGPPPPRDESTPRAPR 169
Query: 204 --LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGF 261
GFVDS +K+Y GNL WG+ + L + F Q +L AKVI++R +GRSRGFGF
Sbjct: 170 GGGGGGGGGFVDSANKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGF 229
Query: 262 VTFETAEDLQSALDAMNGV 280
VT+ +A+++ +A+ ++G+
Sbjct: 230 VTYGSAQEVNNAISNLDGI 248
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 52/77 (67%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D A ++YVGNL + + +S+L +F+E G V A+++YDR + RSRGFGFVT GS +E
Sbjct: 181 DSANKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAQEVNN 240
Query: 170 AIRLFDGSQIGGRTVKV 186
AI DG + GR ++V
Sbjct: 241 AISNLDGIDLDGRQIRV 257
>gi|224106031|ref|XP_002314019.1| predicted protein [Populus trichocarpa]
gi|222850427|gb|EEE87974.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 114/186 (61%), Gaps = 6/186 (3%)
Query: 97 AVEEEEEPKVA---ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
AV EE P A +S+ A RLYVGN+P ++T+ L ++ E G V AE++YD+ + RS
Sbjct: 60 AVAEETAPAAAVDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRS 119
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD 213
R F FVTM + E+A AI +G++IGGR +KVN E P ++ P LQ+ FVD
Sbjct: 120 RRFAFVTMKTAEDANAAIEKLNGTEIGGREIKVNITEKPL---QSLDLPSLQSDESQFVD 176
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
SP+K+Y GNL + + L++ F + +LSAKV T +S GFGFVTF + ED++ A
Sbjct: 177 SPYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVA 236
Query: 274 LDAMNG 279
+ + N
Sbjct: 237 ISSFNN 242
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++ + +L F++ G V SA++ T +S GFGFVT S E+ +
Sbjct: 176 DSPYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEV 235
Query: 170 AIRLFDGSQIGGRTVKVN 187
AI F+ S + G+ ++VN
Sbjct: 236 AISSFNNSLLEGQPIRVN 253
>gi|118489133|gb|ABK96373.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 255
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 114/186 (61%), Gaps = 6/186 (3%)
Query: 97 AVEEEEEPKVA---ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
AV EE P A +S+ A RLYVGN+P ++T+ L ++ E G V AE++YD+ + RS
Sbjct: 60 AVAEETAPAAAVDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRS 119
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD 213
R F FVTM + E+A AI +G++IGGR +KVN E P ++ P LQ+ FVD
Sbjct: 120 RRFAFVTMKTAEDANAAIEKLNGTEIGGREIKVNITEKPL---QSLDLPSLQSDETQFVD 176
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
SP+K+Y GNL + + L++ F + +LSAKV T +S GFGFVTF + ED++ A
Sbjct: 177 SPYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVA 236
Query: 274 LDAMNG 279
+ + N
Sbjct: 237 ISSFNN 242
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++ + +L F++ G V SA++ T +S GFGFVT S E+ +
Sbjct: 176 DSPYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEV 235
Query: 170 AIRLFDGSQIGGRTVKVN 187
AI F+ S + G+ ++VN
Sbjct: 236 AISSFNNSLLEGQPIRVN 253
>gi|294464377|gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++Y+GNLP+S S+ LA + E G+V E++YD+ T RSRGF F TM SVE+A +
Sbjct: 112 KVYLGNLPFSCDSAELAGIIQEHGSVEMVEVIYDQNTGRSRGFAFATMSSVEDANALVEN 171
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY--QGFVDSPHKIYAGNLGWGLTSQG 231
DGSQ GGRT++VN E R + K ++ Q D H++Y GNL W + +
Sbjct: 172 LDGSQYGGRTLRVNLREEASRSLRVNLRDKSRSEQRNQTNNDGQHRVYIGNLSWDVNEEI 231
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + F LL AK++F+R TGRSRGFGF+TF T + ++A+ ++NG
Sbjct: 232 LNEVFSEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVASLNG 279
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
+D R+Y+GNL + + L EVF+E G + A+IV+DR T RSRGFGF+T + EA+
Sbjct: 212 NDGQHRVYIGNLSWDVNEEILNEVFSEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAE 271
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
A+ +G ++ GR ++V+
Sbjct: 272 AAVASLNGKELEGRAMRVDL 291
>gi|115453241|ref|NP_001050221.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|18921322|gb|AAL82527.1|AC084766_13 putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|108708430|gb|ABF96225.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548692|dbj|BAF12135.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|125586437|gb|EAZ27101.1| hypothetical protein OsJ_11032 [Oryza sativa Japonica Group]
gi|215697052|dbj|BAG91046.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766568|dbj|BAG98727.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 114/166 (68%), Gaps = 9/166 (5%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R++VGNLP+S+ S+ LA +F +AG+V E++YD++T RSRGFGFVTM SVEE + A+
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
F+G + GR+++VN P P+ Q+S + +++Y GNL WG+ + L
Sbjct: 147 FNGYILDGRSLRVNSGPPP---------PREQSSQRAPRGEANRVYVGNLSWGVDNAALA 197
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F G+ +L AKVI++R +GRSRGFGFVT+ +AE++++A+ ++G
Sbjct: 198 NLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDG 243
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 59/90 (65%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E+ + A EA R+YVGNL + + +++LA +F+ G V A+++YDR + RSRGFGFVT
Sbjct: 168 EQSSQRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVT 227
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
GS EE + A+ DG+ + GR ++V E
Sbjct: 228 YGSAEEVENAVSNLDGADMDGRQIRVTVAE 257
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
+++ GNL + + S L F+ + +VI+++ TGRSRGFGFVT + E++++A++
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 277 MNGVV 281
NG +
Sbjct: 147 FNGYI 151
>gi|125544079|gb|EAY90218.1| hypothetical protein OsI_11785 [Oryza sativa Indica Group]
Length = 265
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 114/166 (68%), Gaps = 9/166 (5%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R++VGNLP+S+ S+ LA +F +AG+V E++YD++T RSRGFGFVTM SVEE + A+
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
F+G + GR+++VN P P+ Q+S + +++Y GNL WG+ + L
Sbjct: 147 FNGYILDGRSLRVNSGPPP---------PREQSSRRAPRGEANRVYVGNLSWGVDNAALA 197
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F G+ +L AKVI++R +GRSRGFGFVT+ +AE++++A+ ++G
Sbjct: 198 NLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDG 243
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 59/90 (65%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E+ + A EA R+YVGNL + + +++LA +F+ G V A+++YDR + RSRGFGFVT
Sbjct: 168 EQSSRRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVT 227
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
GS EE + A+ DG+ + GR ++V E
Sbjct: 228 YGSAEEVENAVSNLDGADMDGRQIRVTVAE 257
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
+++ GNL + + S L F+ + +VI+++ TGRSRGFGFVT + E++++A++
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 277 MNGVV 281
NG +
Sbjct: 147 FNGYI 151
>gi|125559266|gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indica Group]
Length = 259
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 3/170 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +++VGNLP+S+ S+ LA +F +AG+V E+VYDR T RSRGFGFVTM + EEA A
Sbjct: 73 EDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAA 132
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ F+G GR ++VN P + A P+ S DS +K+Y GNL WG+ +
Sbjct: 133 VEQFNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSN---FDSSNKLYVGNLAWGVDNS 189
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L + F Q +L AKVI++R +GRSRGFGFVT+ +AE++ +A+ ++GV
Sbjct: 190 TLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGV 239
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + +LYVGNL + + +S+L +F+E GTV A+++YDR + RSRGFGFVT GS EE
Sbjct: 172 DSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNN 231
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
AI DG + GR ++V E
Sbjct: 232 AISNLDGVDLDGRQIRVTVAE 252
>gi|115473531|ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|22296371|dbj|BAC10140.1| putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza
sativa Japonica Group]
gi|113611900|dbj|BAF22278.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|125601192|gb|EAZ40768.1| hypothetical protein OsJ_25244 [Oryza sativa Japonica Group]
Length = 264
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 3/170 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +++VGNLP+S+ S+ LA +F +AG+V E+VYDR T RSRGFGFVTM + EEA A
Sbjct: 78 EDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAA 137
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ F+G GR ++VN P + A P+ S DS +K+Y GNL WG+ +
Sbjct: 138 VEQFNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSN---FDSSNKLYVGNLAWGVDNS 194
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L + F Q +L AKVI++R +GRSRGFGFVT+ +AE++ +A+ ++GV
Sbjct: 195 TLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGV 244
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + +LYVGNL + + +S+L +F+E GTV A+++YDR + RSRGFGFVT GS EE
Sbjct: 177 DSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNN 236
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
AI DG + GR ++V E
Sbjct: 237 AISNLDGVDLDGRQIRVTVAE 257
>gi|149392545|gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 205
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 111/170 (65%), Gaps = 3/170 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +++VGNLP+S+ S+ LA +F +AG+V E+VYDR T RSRGFGFVTM + EEA A
Sbjct: 19 EDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAA 78
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
I F+G GR ++VN P + A P+ S DS +K+Y GNL WG+ +
Sbjct: 79 IEQFNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSN---FDSSNKLYVGNLAWGVDNS 135
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L + F Q +L AKVI++R +GRSRGFGFVT+ +AE++ +A+ ++GV
Sbjct: 136 TLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGV 185
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + +LYVGNL + + +S+L +F+E GTV A+++YDR + RSRGFGFVT GS EE
Sbjct: 118 DSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNN 177
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
AI DG + GR ++V E
Sbjct: 178 AISNLDGVDLDGRQIRVTVAE 198
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
gi|222833550|gb|EEE72027.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 123/195 (63%), Gaps = 11/195 (5%)
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR 152
+EE+ + +EP + +L+VGNLP+++ S+ LA++F AG V E+ YD+VT R
Sbjct: 74 QEEDVFGDGDEPSFSPD---LQLFVGNLPFNVNSAQLADLFKSAGNVEMVEVKYDKVTGR 130
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQG-- 210
SRGFGFVTM ++EE + A + F+G ++ GR ++VN P+ + P+ +NS+
Sbjct: 131 SRGFGFVTMSTIEEVEAASQQFNGYELDGRPLRVNSGPPPQRETSFSRLPQRENSFSRGP 190
Query: 211 ------FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
DS +++Y GNL W + L F+ + ++ AKV+++R +GRS+GFGFVT+
Sbjct: 191 GARGGETFDSSNRVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTY 250
Query: 265 ETAEDLQSALDAMNG 279
+AE+++ A+D++NG
Sbjct: 251 SSAEEVEDAVDSLNG 265
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + R+YVGNL +++ S+L +F E G V A++VYDR + RS+GFGFVT S EE ++
Sbjct: 199 DSSNRVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVED 258
Query: 170 AIRLFDGSQIGGRTVKVNFPEV-PR 193
A+ +G+++ GR ++V+ E PR
Sbjct: 259 AVDSLNGAELDGRAIRVSVAEAKPR 283
>gi|116790996|gb|ABK25816.1| unknown [Picea sitchensis]
Length = 248
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 105/168 (62%), Gaps = 4/168 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGN+P + T+ LA++F E G V AE++YD+ T RSR F FVTM +VE+A+ AI
Sbjct: 74 RLYVGNIPRTSTNEELAKIFGECGNVEKAEVMYDKYTKRSRRFAFVTMSTVEDAQAAIEK 133
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G++IGGR +KVN E P G F+DSP+K+Y GNL +T++ L+
Sbjct: 134 MNGTEIGGRVIKVNITEKPLD----VSGLNRLTEEAEFIDSPYKVYVGNLAKAVTTETLK 189
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F + +L AKV TG+S G+GFV+F + D+++A+ A N VV
Sbjct: 190 KKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSEADVEAAISAFNNVV 237
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++T+ +L + FAE G V A++ T +S G+GFV+ S + +
Sbjct: 169 DSPYKVYVGNLAKAVTTETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSEADVEA 228
Query: 170 AIRLFDGSQIGGRTVKVN 187
AI F+ + G+ ++VN
Sbjct: 229 AISAFNNVVLEGKPMRVN 246
>gi|357160118|ref|XP_003578663.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 296
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 108/169 (63%), Gaps = 8/169 (4%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V +E++Y+R TD+SRGFGFVTM ++EEA++A
Sbjct: 115 EEAKVYVGNLPYDIDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 174
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ +F +GGR + VN PRG +++ + F S +IY GNL W +
Sbjct: 175 VEMFHRYDVGGRLLTVN-KAAPRGA-------RVERPARDFGGSSFRIYVGNLPWQVDDS 226
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++ A+V+++R TGRSRGFGFVT + E+L A+ A++G
Sbjct: 227 RLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMASQEELDDAIAALDG 275
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 52/77 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L ++F+E G V A +VYDR T RSRGFGFVTM S EE +AI
Sbjct: 213 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMASQEELDDAIAA 272
Query: 174 FDGSQIGGRTVKVNFPE 190
DG + GR ++VN E
Sbjct: 273 LDGQSLEGRALRVNVAE 289
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 148/272 (54%), Gaps = 33/272 (12%)
Query: 32 LPSLFKTKSP---------KPLKLEKAQN------PSA-LHLSLLSLSYFRQFSASFDGF 75
LP++F TK+P KP+KL + + PS L LS S + + D
Sbjct: 22 LPTIFSTKTPHSYLPIPPHKPIKLLLSCSQSSLFSPSLFLKSKTLSSSVVTFVAQTSDWA 81
Query: 76 QVTEDSQDEPETEQEEE---EEEEAVEEEEEPKVAASD-----EAARLYVGNLPYSMTSS 127
Q ED+ E EQEE+ E EEA+ ++ E A+++VGNLPY + S
Sbjct: 82 QQEEDNTVIIEEEQEEKVTWENEEAISDDGVVDDGEDSYSEPPEEAKVFVGNLPYDVDSE 141
Query: 128 SLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187
LA +F +AG V AE++Y+R TDRSRGFGFV+M +VEEA++A+ +F ++ GR + VN
Sbjct: 142 RLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDMFHRYELDGRLLTVN 201
Query: 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKV 247
PRG + P++ + ++Y GNL W + S L F ++ A+V
Sbjct: 202 -KAAPRGSQ-PERPPRV-------FEPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARV 252
Query: 248 IFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+F+R TGRSRGFGFVT + +L+ A+ A +G
Sbjct: 253 VFDRETGRSRGFGFVTMSSQTELEDAIAATDG 284
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + A R+YVGNLP+ + S+ L +VF+E G V A +V+DR T RSRGFGFVT
Sbjct: 211 ERPPRVF--EPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVT 268
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
M S E ++AI DG + GRT++VN E
Sbjct: 269 MSSQTELEDAIAATDGQTLDGRTIRVNVAE 298
>gi|224099981|ref|XP_002311696.1| predicted protein [Populus trichocarpa]
gi|118486835|gb|ABK95252.1| unknown [Populus trichocarpa]
gi|222851516|gb|EEE89063.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 133/236 (56%), Gaps = 18/236 (7%)
Query: 51 NPSALHLSLLSLSYF-----RQFSASFDGFQVTED-SQDEPETEQEEEEEEEAVEEEEEP 104
+P + L+ LS S + Q +AS+ + + D +Q+E EEEE E E
Sbjct: 39 SPVRIMLATLSRSNYVIEPLSQVAASWRVPRASADVAQEEAPATAPAVEEEELASGETEG 98
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ +LY GNLPY++ S+ LA + E GT E++Y R T RSRGF FVTM S+
Sbjct: 99 EADQVPVNTKLYFGNLPYNVDSAQLAGMIQEYGTPEMVEVLYHRETGRSRGFAFVTMSSI 158
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
E+ + I DGSQ GR ++VNF + P+ E + ++ +K++ GNL
Sbjct: 159 EDCETVIENLDGSQYMGRILRVNFADKPKPKEPL------------YPETEYKLFIGNLS 206
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
W +TS+ L AFQ ++ A+V+++ TG+SRG+GFV + T E+L++AL ++NGV
Sbjct: 207 WSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKEELETALQSLNGV 262
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++GNL +S+TS SL + F E G V A ++YD T +SRG+GFV + EE + A++
Sbjct: 199 KLFIGNLSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKEELETALQS 258
Query: 174 FDGSQIGGRTVKVNFPE 190
+G ++ GR ++V+ E
Sbjct: 259 LNGVELEGRALRVSLAE 275
>gi|224133740|ref|XP_002321649.1| predicted protein [Populus trichocarpa]
gi|222868645|gb|EEF05776.1| predicted protein [Populus trichocarpa]
Length = 295
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/274 (36%), Positives = 147/274 (53%), Gaps = 35/274 (12%)
Query: 32 LPSLFKTKSP--------KPLKLEKAQNPSALHLSL-----LSLS---------YFRQFS 69
PS+F +K P +P+KL+ + + S LS+ LSL+ + +Q
Sbjct: 9 FPSIFTSKPPLKPLPISHRPIKLQLSYSHSLSTLSVKPKTHLSLTIPFVAQTSDWAQQEE 68
Query: 70 ASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAAS----DEAARLYVGNLPYSMT 125
+ +TE S E E E E EAV E E E A++YVGNLPY +T
Sbjct: 69 ENNTTITLTEVSDWEAEGEDAAASETEAVRGEGERGDEEGFVEPPEEAKIYVGNLPYDVT 128
Query: 126 SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185
S LA +F +AGTV +E++Y+ TD SRGFGFVTM +VEE+ +AI +F+ + GR +
Sbjct: 129 SEKLAMLFDQAGTVEISEVIYNTETDTSRGFGFVTMSTVEESDKAIEMFNRYNLDGRLLT 188
Query: 186 VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSA 245
VN PRG R P++ + ++IY GNL WG+ S L + F ++SA
Sbjct: 189 VN-KAAPRGS-RPERPPRVS-------EPSYRIYVGNLPWGVDSGRLEEVFSEHGKVVSA 239
Query: 246 KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+V+ + TGRSRGFGFVT + +L A+ A++G
Sbjct: 240 QVVSDWETGRSRGFGFVTMSSESELNDAIAALDG 273
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V S+ + R+YVGNLP+ + S L EVF+E G V SA++V D T RSRGFGFVT
Sbjct: 200 ERPPRV--SEPSYRIYVGNLPWGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVT 257
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNF-PEVPR 193
M S E +AI DG ++ GR ++VN E PR
Sbjct: 258 MSSESELNDAIAALDGQELDGRAIRVNVAAERPR 291
>gi|225440003|ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 124/204 (60%), Gaps = 22/204 (10%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
E++E+ + +E EP + +L+VGNLP+++ S+ LA +F +AG V E++YD++T
Sbjct: 72 EQDEDVLSDEGEPSFSPD---LKLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITG 128
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP---------------RGGE 196
RSRGFGFVTM +VEE + A + F+G ++ GR ++VN P RG
Sbjct: 129 RSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRENSNFRGENSNFRGEN 188
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
GP+ + ++S ++IY GNL WG+ L F Q + A+VI++R TGRS
Sbjct: 189 TNFRGPRGGAN----LNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRS 244
Query: 257 RGFGFVTFETAEDLQSALDAMNGV 280
RGFGFVT+ +AE++ A+++++GV
Sbjct: 245 RGFGFVTYNSAEEVNRAIESLDGV 268
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + +L +F+E G V A ++YDR T RSRGFGFVT S EE AI
Sbjct: 205 RIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIES 264
Query: 174 FDGSQIGGRTVKVNFPEV-PR 193
DG + GR+++V E PR
Sbjct: 265 LDGVDLNGRSIRVTMAEARPR 285
>gi|357121842|ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 275
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 111/172 (64%), Gaps = 2/172 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +L+VGNLP+++ S+ LA +F +AG+V E+VYDR+T RSRGFGFVTM + EE A
Sbjct: 82 EDLKLFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSTAEEVSAA 141
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF--VDSPHKIYAGNLGWGLT 228
+ F+G GR ++VN P E A P+ G DS +K+Y GNL WG+
Sbjct: 142 VEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRGMGGGGGGGSFDSGNKLYVGNLSWGVD 201
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ L + F Q +L AKVI++R +GRSRGFGFVT+ +A+++ +A+ ++GV
Sbjct: 202 NSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGV 253
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D +LYVGNL + + +S+L +F+E G V A+++YDR + RSRGFGFVT GS +E
Sbjct: 186 DSGNKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 245
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
AI DG + GR ++V E
Sbjct: 246 AISNLDGVDLDGRQIRVTVAE 266
>gi|168054274|ref|XP_001779557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669038|gb|EDQ55633.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 113/185 (61%), Gaps = 7/185 (3%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
E++ VA +++YVGNLP++ S+ LAE+ ++ GTV E++YD+++ RSRGF F
Sbjct: 9 EDDVAAPVAEEQLGSKVYVGNLPWTCDSAQLAEICSQHGTVDVVEVIYDKLSGRSRGFAF 68
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP----EVPRGGERAAMGPKLQNSYQGFVDS 214
VTM S ++A+ I DGS +GGR +KVNFP + PR + A P + D
Sbjct: 69 VTMASHDDAQALINALDGSDMGGRALKVNFPQSQKDKPRFEKSEARPPTADRRPR---DD 125
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
P+K++ GN+ WG + F ++ AK++++R +GRSRGFGFVT E D Q+A+
Sbjct: 126 PNKLFVGNIPWGCDEAAMTSLFSPYGSVVDAKIVYDRDSGRSRGFGFVTMEKVGDAQTAM 185
Query: 275 DAMNG 279
+ ++G
Sbjct: 186 ENLDG 190
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 67/107 (62%), Gaps = 7/107 (6%)
Query: 82 QDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS 141
+D+P E+ E A + P+ D+ +L+VGN+P+ +++ +F+ G+V
Sbjct: 103 KDKPRFEKSEARPPTA---DRRPR----DDPNKLFVGNIPWGCDEAAMTSLFSPYGSVVD 155
Query: 142 AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
A+IVYDR + RSRGFGFVTM V +A+ A+ DG+++ GR ++VNF
Sbjct: 156 AKIVYDRDSGRSRGFGFVTMEKVGDAQTAMENLDGTELDGRELRVNF 202
>gi|148908208|gb|ABR17219.1| unknown [Picea sitchensis]
Length = 296
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 151/276 (54%), Gaps = 20/276 (7%)
Query: 8 MAASSSLC---NKLYNLQ-AITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLS 63
MAASS C N NL + +P+ +PS+ K P L+ + HL L S +
Sbjct: 1 MAASSCYCAPANTHLNLNYRLNSLPSLRIPSV-KISMPPHFSLQLS------HL-LASRN 52
Query: 64 YFRQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYS 123
FR + + + Q TE S+ E E E++ +++ ++ E + + +LYVGNLP S
Sbjct: 53 VFRITALTQEEIQTTEQSEPEEEETNAEQQPKDSTRQKPENEEKSPSNRTKLYVGNLPRS 112
Query: 124 MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183
S+ L +F E GTV SAE+V + T SRGF FVTM +V EAK AI GS +GGR
Sbjct: 113 CDSAQLTHLFQEFGTVESAEVVRNEETGLSRGFAFVTMSTVIEAKAAIEKLQGSDLGGRD 172
Query: 184 VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL 243
+ VNFP AA+ + + +V++P++++AGNL W + ++ LRD F +L
Sbjct: 173 MIVNFP--------AAVLSRGNKTEDEYVETPYQLFAGNLAWSVKNEILRDLFSEHGTVL 224
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AKV++ G R FGFV + ++++A+ ++NG
Sbjct: 225 GAKVVYNSKGGVPRAFGFVCLSSQSEMEAAIVSLNG 260
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+ GNL +S+ + L ++F+E GTV A++VY+ R FGFV + S E + AI
Sbjct: 198 QLFAGNLAWSVKNEILRDLFSEHGTVLGAKVVYNSKGGVPRAFGFVCLSSQSEMEAAIVS 257
Query: 174 FDGSQIGGRTVKV 186
+G + GR + V
Sbjct: 258 LNGKEFHGRNLVV 270
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 152/298 (51%), Gaps = 42/298 (14%)
Query: 9 AASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPK---PLKLEKAQNPSALHLSLLSLSYF 65
+A+++ C K +L + + PS+F KS PLK P+ L+LS+ S F
Sbjct: 3 SATANPCLKTLSLSHNCFTTSLYTPSIFNPKSHNFSIPLK------PTKLNLSISVFSPF 56
Query: 66 RQFSASFDGFQVTEDSQDEPETEQEEEEEEEAV------------------------EEE 101
+S V + S + E+ ++E+ V EEE
Sbjct: 57 SPQKSSTIVSYVAQTSDWDQESSNALLDDEQQVGGATWGTQNFGDSEPQVSGVGNEDEEE 116
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E + E A+L+VGNLPY + S LA++F AG V AE++Y+R TDRSRGFGFVTM
Sbjct: 117 SEQGFSEPPEEAKLFVGNLPYDVDSERLAQIFDGAGVVEIAEVIYNRETDRSRGFGFVTM 176
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+VEEA++A+ + +G + GR + VN PRG R P+ + ++Y G
Sbjct: 177 STVEEAEKAVEMLNGFDMNGRLLTVN-KAAPRGS-RPERPPRE-------FEPSCRVYVG 227
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL W + + L F +LSA+V+ +R TGRSRGFGFV+ + ++ A+ A++G
Sbjct: 228 NLPWDVDNARLEQVFSEHGKVLSARVVSDRETGRSRGFGFVSMASESEMNDAIAALDG 285
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ R+YVGNLP+ + ++ L +VF+E G V SA +V DR T RSRGFGFV+M S E +AI
Sbjct: 221 SCRVYVGNLPWDVDNARLEQVFSEHGKVLSARVVSDRETGRSRGFGFVSMASESEMNDAI 280
Query: 172 RLFDGSQIGGRTVKVNFPE 190
DG + GR ++VN E
Sbjct: 281 AALDGQTLDGRAIRVNVAE 299
>gi|359806184|ref|NP_001240946.1| uncharacterized protein LOC100812934 [Glycine max]
gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 121/193 (62%), Gaps = 7/193 (3%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
E+EE+ + + P + +L+VGNLP+S+ S+ LAE+F AG V E++YD+ T
Sbjct: 71 EQEEDTFGDGDGPSFS---RDLKLFVGNLPFSVDSARLAELFESAGNVEVVEVIYDKTTG 127
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF 211
RSRGFGFVTM SVEEA+ A + F+G ++ GR+++VN P E A +
Sbjct: 128 RSRGFGFVTMSSVEEAEAAAKQFNGYELDGRSLRVNSGPPPARNESAPRFRGGSSFGSRG 187
Query: 212 V---DSPHKIYAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETA 267
DS ++++ GNL WG+ L F+ Q +L A+VI++R +GRSRGFGFVTF +
Sbjct: 188 GGPSDSENRVHVGNLAWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSP 247
Query: 268 EDLQSALDAMNGV 280
++++SA+ +++GV
Sbjct: 248 DEVKSAIQSLDGV 260
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
SD R++VGNL + + +L +F E G V A ++YDR + RSRGFGFVT GS +E
Sbjct: 191 SDSENRVHVGNLAWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEV 250
Query: 168 KEAIRLFDGSQIGGRTVKVNF 188
K AI+ DG + GR ++V+
Sbjct: 251 KSAIQSLDGVDLNGRAIRVSL 271
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
gi|241919059|gb|EER92203.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
Length = 262
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 123/193 (63%), Gaps = 16/193 (8%)
Query: 87 TEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
TE+ E E + EEE E R++VGNLP+S+ S+ LA +F +AG+V E++Y
Sbjct: 64 TEELEAEGQPGGEEE-------FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIY 116
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN 206
D++T RSRGFGFVTM SV+E + A+ F+G + GR+++VN P P+ +
Sbjct: 117 DKLTGRSRGFGFVTMSSVQEVEAAVEQFNGYVLDGRSLRVNSGPPP---------PRDPS 167
Query: 207 SYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266
S +G +++Y GNL WG+ + L + F Q +L A+++++R +GRSRGFGFVT+ +
Sbjct: 168 SQRGPRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIVYDRESGRSRGFGFVTYGS 227
Query: 267 AEDLQSALDAMNG 279
AE++++A+ ++G
Sbjct: 228 AEEVENAISNLDG 240
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 55/80 (68%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A R+YVGNL + + +S+LA +F+E G V A IVYDR + RSRGFGFVT GS EE + A
Sbjct: 175 DANRVYVGNLSWGVDNSALANLFSEQGEVLEARIVYDRESGRSRGFGFVTYGSAEEVENA 234
Query: 171 IRLFDGSQIGGRTVKVNFPE 190
I DGS + GR ++V E
Sbjct: 235 ISNLDGSDLDGRQIRVTVAE 254
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
+++ GNL + + S L F+ + +VI+++ TGRSRGFGFVT + +++++A++
Sbjct: 84 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVQEVEAAVEQ 143
Query: 277 MNGVV 281
NG V
Sbjct: 144 FNGYV 148
>gi|238010804|gb|ACR36437.1| unknown [Zea mays]
Length = 262
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 116/170 (68%), Gaps = 9/170 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E R++VGNLP+S+ S+ LA +F +AG+V E++YD++T RSRGFGFVTM SVEE + A
Sbjct: 79 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVA 138
Query: 171 IRLFDGSQIGGRTVKVNF-PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
+ F+G + GR+++VN P PR +R++ P+ +++Y GNL WG+ +
Sbjct: 139 VDQFNGYVLDGRSLRVNSGPPPPR--DRSSRSPQRPRG------DANRVYVGNLSWGVDN 190
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + F Q +L A++I++R +GRSRGFGFVT+ +AE++++A+ ++G
Sbjct: 191 SALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDG 240
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 55/80 (68%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A R+YVGNL + + +S+LA +F+E G V A I+YDR + RSRGFGFVT GS EE + A
Sbjct: 175 DANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENA 234
Query: 171 IRLFDGSQIGGRTVKVNFPE 190
I DG+ + GR ++V E
Sbjct: 235 ISNLDGADLDGRQIRVTVAE 254
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
+++ GNL + + S L F+ + +VI+++ TGRSRGFGFVT + E+++ A+D
Sbjct: 82 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 141
Query: 277 MNGVV 281
NG V
Sbjct: 142 FNGYV 146
>gi|242048440|ref|XP_002461966.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
gi|241925343|gb|EER98487.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
Length = 294
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 114/196 (58%), Gaps = 17/196 (8%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
E + E AVE+EE + E A++YVGNLPY + S LA++F +AG V AE++Y+
Sbjct: 91 EDDAVEASAAVEDEEVGEYVEPPEEAKVYVGNLPYDVDSERLAQLFEQAGVVEVAEVIYN 150
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGG--ERAAM--GPK 203
R TDRSRGFGFVTM +VEEA +A+ + + GR + VN PRG +R GP
Sbjct: 151 RETDRSRGFGFVTMSTVEEADKAVEMLHRYDVNGRLLTVN-KAAPRGSRVDRPPRQSGPS 209
Query: 204 LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263
L +IY GNL W + L F ++ A+V+++R TGRSRGFGFVT
Sbjct: 210 L------------RIYVGNLPWQVDDSKLVQMFSEHGKVVDARVVYDRETGRSRGFGFVT 257
Query: 264 FETAEDLQSALDAMNG 279
T ++L A+ A++G
Sbjct: 258 MATQDELDDAIAALDG 273
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 52/77 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L ++F+E G V A +VYDR T RSRGFGFVTM + +E +AI
Sbjct: 211 RIYVGNLPWQVDDSKLVQMFSEHGKVVDARVVYDRETGRSRGFGFVTMATQDELDDAIAA 270
Query: 174 FDGSQIGGRTVKVNFPE 190
DG + GR ++VN E
Sbjct: 271 LDGQSLDGRALRVNVAE 287
>gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 118/199 (59%), Gaps = 14/199 (7%)
Query: 86 ETEQEEEEEEEA-----VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+TE E+ EE+ VE EE E A+L+VGNLPY + +LAE+F +AGTV
Sbjct: 89 QTESGAEDGEESGGDGFVEGGEEDSYPLPPEEAKLFVGNLPYDVDHQALAELFDQAGTVE 148
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
AE++Y+R TD+SRGFGFVTM +VEEA++A+ +F+ I GR + VN PRG R
Sbjct: 149 VAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEMFNRYDINGRLLTVN-KAAPRGA-RVDR 206
Query: 201 GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFG 260
P+ + ++Y GNL W + L F ++ A+V+++R TGRSRGFG
Sbjct: 207 PPRA-------FEPAFRMYVGNLPWQVDDARLEQVFSEHGKVVEARVVYDRETGRSRGFG 259
Query: 261 FVTFETAEDLQSALDAMNG 279
FVT T +L A+ A++G
Sbjct: 260 FVTMSTQTELDDAIAALDG 278
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 54/83 (65%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A + A R+YVGNLP+ + + L +VF+E G V A +VYDR T RSRGFGFVTM + E
Sbjct: 210 AFEPAFRMYVGNLPWQVDDARLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSTQTEL 269
Query: 168 KEAIRLFDGSQIGGRTVKVNFPE 190
+AI DG + GR ++VN E
Sbjct: 270 DDAIAALDGQSLDGRAIRVNVAE 292
>gi|225450219|ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloroplastic [Vitis vinifera]
gi|297736206|emb|CBI24844.3| unnamed protein product [Vitis vinifera]
Length = 247
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 111/179 (62%), Gaps = 5/179 (2%)
Query: 103 EPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E VA SD AAR LYVGN+P ++ S+ LA + E G V AE++YD+ + RSR F FVTM
Sbjct: 59 EAPVATSDVAARRLYVGNIPRTLDSAELARIVEEHGAVEKAEVMYDKYSGRSRRFAFVTM 118
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+VE+A AI +G++IGGR +KVN E P ++ LQ F+DSPHK+Y G
Sbjct: 119 KTVEDANAAIEKLNGTEIGGREIKVNITEKPLLTLDMSL---LQAEESQFIDSPHKVYVG 175
Query: 222 NLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL +T+ L F + G +LSAKV T +S GFGFV+F + ED+++A+ + N
Sbjct: 176 NLARTVTTDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAISSCNN 234
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D ++YVGNL ++T+ +L + F+E G V SA++ T +S GFGFV+ S E+ +
Sbjct: 167 DSPHKVYVGNLARTVTTDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVE 226
Query: 169 EAIRLFDGSQIGGRTVKVN 187
AI + + + G+ ++VN
Sbjct: 227 AAISSCNNAFLDGQRIRVN 245
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
gi|297327336|gb|EFH57756.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
Length = 289
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 122/200 (61%), Gaps = 10/200 (5%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E EE+ ++ P+ + +L+VGNLP+++ S+ LA++F AG V E++YD+V
Sbjct: 68 EFEVEEDGFADDAAPQQQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKV 127
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF-PEVPRGGERAAMGPK----- 203
T RSRGFGFVTM SV E + A F+G ++ GR ++VN P P+ + + GP+
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAANQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGS 187
Query: 204 ----LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF 259
S +++Y GNL WG+ L F Q ++ A+VI++R +GRS+GF
Sbjct: 188 SGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGF 247
Query: 260 GFVTFETAEDLQSALDAMNG 279
GFVT+ +++++Q+A++++NG
Sbjct: 248 GFVTYNSSQEVQNAINSLNG 267
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + +L +FAE G V A ++YDR + RS+GFGFVT S +E + AI
Sbjct: 205 RVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNAINS 264
Query: 174 FDGSQIGGRTVKV 186
+G+ + GR ++V
Sbjct: 265 LNGADLDGRQIRV 277
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 280
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 143/262 (54%), Gaps = 27/262 (10%)
Query: 32 LPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEE 91
LPSL +PK L L P +L L + + S F Q +P +
Sbjct: 11 LPSL----NPKTLSLCNPNKPISLSFKL----HAKPISIPSSLFSSFVPLQQQPYSSSSR 62
Query: 92 EEEEEAVEEE---EEPKVAASDEAA-----RLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
A+ E EE + DE++ +L+VGNLP+++ S+ LA +F AG V E
Sbjct: 63 FVPSVAISSEFGQEEDVSSDGDESSFSQDLKLFVGNLPFNVDSAQLAGLFESAGNVEMVE 122
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
++YD+VT RSRGFGFVTM S++E + A + F+G ++ GR ++VN P+ + P+
Sbjct: 123 VIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGYELEGRALRVNSGPPPQRESSFSRSPR 182
Query: 204 L------QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSR 257
S +G +++Y GNL W + + L F Q ++ AKV+++R +GRSR
Sbjct: 183 FGGGGGGGESLEG-----NRLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSR 237
Query: 258 GFGFVTFETAEDLQSALDAMNG 279
GFGFVT+ +AE++++A+D++NG
Sbjct: 238 GFGFVTYSSAEEVENAIDSLNG 259
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E RLYVGNL +S+ + +L F+E G V A++VYDR + RSRGFGFVT S EE + A
Sbjct: 194 EGNRLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENA 253
Query: 171 IRLFDGSQIGGRTVKVNFPEV-PR 193
I +G+++ GR ++V+ E PR
Sbjct: 254 IDSLNGAELDGRAIRVSVAEARPR 277
>gi|115480705|ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|52076131|dbj|BAD46644.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076138|dbj|BAD46651.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|113632179|dbj|BAF25860.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|215697272|dbj|BAG91266.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737486|dbj|BAG96616.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218202645|gb|EEC85072.1| hypothetical protein OsI_32419 [Oryza sativa Indica Group]
gi|222642113|gb|EEE70245.1| hypothetical protein OsJ_30367 [Oryza sativa Japonica Group]
Length = 322
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 107/169 (63%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V +E++Y+R TDRSRGFGFVTM +VEEA++A
Sbjct: 141 EEAKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKA 200
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ +F + GR + VN + A G +++ + F S +IY GNL W +
Sbjct: 201 VEMFHRYDVDGRLLTVN--------KAAPRGARVERPPRQFGPS-FRIYVGNLPWQVDDS 251
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++ A+V+++R TGRSRGFGFVT T E+L A+ A++G
Sbjct: 252 RLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDG 300
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L ++F+E G V A +VYDR T RSRGFGFVTM + EE +AI
Sbjct: 238 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAA 297
Query: 174 FDGSQIGGRTVKVNFPE--VPRGG 195
DG + GR ++VN E PR G
Sbjct: 298 LDGQSLDGRALRVNVAEERPPRRG 321
>gi|356525630|ref|XP_003531427.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A RLYVGN+P ++T+ LA++ E G V AE++YD+ + RSR F FVTM +VE+A I
Sbjct: 69 ARRLYVGNIPRTVTNEELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVI 128
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G++IGGR VKVN E P P LQ F+DSPHK+Y GNL +T+
Sbjct: 129 EKLNGTEIGGREVKVNVTEKPLSTPDL---PLLQAEESEFIDSPHKVYVGNLAKTVTTDT 185
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++ F + +LSAKV T +S G+GFVTF + ED+++A+ + N
Sbjct: 186 LKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNN 233
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 11/112 (9%)
Query: 76 QVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAE 135
VTE P+ + EE E + D ++YVGNL ++T+ +L F+E
Sbjct: 144 NVTEKPLSTPDLPLLQAEESEFI-----------DSPHKVYVGNLAKTVTTDTLKNFFSE 192
Query: 136 AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187
G V SA++ T +S G+GFVT S E+ + AI F+ S + G+T++VN
Sbjct: 193 KGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSLLEGQTIRVN 244
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 41/66 (62%)
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
S ++Y GN+ +T++ L Q + A+V++++Y+GRSR F FVT +T ED +
Sbjct: 68 SARRLYVGNIPRTVTNEELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAV 127
Query: 274 LDAMNG 279
++ +NG
Sbjct: 128 IEKLNG 133
>gi|255574887|ref|XP_002528350.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532218|gb|EEF34022.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 285
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 105/167 (62%), Gaps = 12/167 (7%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY GNLPY++ S+ LA + + GT E++YDR T RSRGF FVTM +VE+ I
Sbjct: 114 KLYFGNLPYNVDSAQLAGIIQDYGTPELVEVLYDRDTGRSRGFAFVTMSTVEDCNAVIEN 173
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
DGSQ GR ++VNF + P+ E + ++ HK++ GNL W +TS+ L
Sbjct: 174 LDGSQFMGRILRVNFSDKPKPKEPL------------YPETEHKLFVGNLSWSVTSESLV 221
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+AFQ ++ A+V+++ TGRSRG+GFV + T ++++AL ++NGV
Sbjct: 222 EAFQEYGNIVGARVLYDGETGRSRGYGFVCYATRSEMENALVSLNGV 268
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +S+TS SL E F E G + A ++YD T RSRG+GFV + E + A+
Sbjct: 205 KLFVGNLSWSVTSESLVEAFQEYGNIVGARVLYDGETGRSRGYGFVCYATRSEMENALVS 264
Query: 174 FDGSQIGGRTVKVNFPE 190
+G ++ GR ++V+ +
Sbjct: 265 LNGVELEGRAMRVSLAQ 281
>gi|115449577|ref|NP_001048500.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|47847880|dbj|BAD21673.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|47848169|dbj|BAD21996.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|113538031|dbj|BAF10414.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|125584133|gb|EAZ25064.1| hypothetical protein OsJ_08857 [Oryza sativa Japonica Group]
gi|215695143|dbj|BAG90334.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737594|dbj|BAG96724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 105/166 (63%), Gaps = 12/166 (7%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY GNLPY+ S+ LA + + T E++YDR T RSRGF FVTM ++E+ ++ I+
Sbjct: 146 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 205
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
DGS GRT++VNF + P+ PKL + ++ HK++ GNL W +TS+ L
Sbjct: 206 LDGSLYSGRTMRVNFADKPK--------PKLPL----YPETEHKLFVGNLSWTVTSEMLT 253
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ FQ ++ A+V+++ TGRSRG+GFV + T E++ AL ++NG
Sbjct: 254 EMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNG 299
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 100 EEEEPKVAASDEA-ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
++ +PK+ E +L+VGNL +++TS L E+F + G V A ++YD T RSRG+GF
Sbjct: 222 DKPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGF 281
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
V + EE EA+ +G+++ GR ++VN
Sbjct: 282 VCYSTKEEMDEALSSLNGTELEGREIRVNL 311
>gi|358248672|ref|NP_001239665.1| uncharacterized protein LOC100790280 [Glycine max]
gi|255644452|gb|ACU22730.1| unknown [Glycine max]
Length = 290
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 138/254 (54%), Gaps = 11/254 (4%)
Query: 29 TNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSY---FRQFSASFDGFQVTEDSQDEP 85
T PSLF T KPL L+ + S++ LSL + ++ F A + E+ Q
Sbjct: 23 TKTKPSLF-TPPSKPLTLQFSCLNSSVSLSLAAPTHRSPLVTFVAQTSDWAQQEEEQSLA 81
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
ETE E E E+ + E A+L+VGNLPY + S LA +F +AGTV AE++
Sbjct: 82 ETEAGLESWEPNGEDAGDESFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVI 141
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ 205
Y+R TD+SRGFGFVTM +VEEA+ A+ F+ I GR + VN P+
Sbjct: 142 YNRETDQSRGFGFVTMSTVEEAESAVEKFNRYDIDGRLLTVN------KASPRGTRPERP 195
Query: 206 NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
+ F +S IY GNL W + + L+ F +++A+V+++R +GRSRGFGFVT
Sbjct: 196 PPRRSF-ESSLSIYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMS 254
Query: 266 TAEDLQSALDAMNG 279
++ A+ A++G
Sbjct: 255 DETEMNDAVAALDG 268
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP+ + ++ L ++F++ G V +A +VYDR + RSRGFGFVTM E +A+
Sbjct: 207 IYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAAL 266
Query: 175 DGSQIGGRTVKVNFPE-VPRGG 195
DG + GR +KV+ E PR G
Sbjct: 267 DGESLDGRAIKVSVAEDRPRRG 288
>gi|296083731|emb|CBI23720.3| unnamed protein product [Vitis vinifera]
Length = 283
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 107/174 (61%), Gaps = 12/174 (6%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S +LY GNLPYS S+ LA + G+ E++Y+R T RSRGF FVTM SVE+
Sbjct: 105 AESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVED 164
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
I DGS+ GGRT++VNF + P+ PKL + ++ +K++ GNL W
Sbjct: 165 CNAVIENLDGSEYGGRTLRVNFSDKPK--------PKLPL----YPETEYKLFVGNLSWS 212
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+TS+ L FQ ++ A+V+++ TGRSRG+GFV + T ++ +AL+++NGV
Sbjct: 213 VTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGV 266
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 100 EEEEPKVAASDEAA-RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
++ +PK+ E +L+VGNL +S+TS SL +VF E G V A ++YD T RSRG+GF
Sbjct: 188 DKPKPKLPLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGF 247
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
V + E A+ +G ++ GR ++++
Sbjct: 248 VCYSTKAEMDTALESLNGVELEGRAIRISL 277
>gi|225433269|ref|XP_002285469.1| PREDICTED: uncharacterized protein LOC100261382 [Vitis vinifera]
Length = 751
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 107/174 (61%), Gaps = 12/174 (6%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S +LY GNLPYS S+ LA + G+ E++Y+R T RSRGF FVTM SVE+
Sbjct: 105 AESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVED 164
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
I DGS+ GGRT++VNF + P+ PKL + ++ +K++ GNL W
Sbjct: 165 CNAVIENLDGSEYGGRTLRVNFSDKPK--------PKL----PLYPETEYKLFVGNLSWS 212
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+TS+ L FQ ++ A+V+++ TGRSRG+GFV + T ++ +AL+++NGV
Sbjct: 213 VTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGV 266
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 100 EEEEPKVAASDEAA-RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
++ +PK+ E +L+VGNL +S+TS SL +VF E G V A ++YD T RSRG+GF
Sbjct: 188 DKPKPKLPLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGF 247
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
V + E A+ +G ++ GR ++V
Sbjct: 248 VCYSTKAEMDTALESLNGVELEGRAIRV 275
>gi|125541605|gb|EAY88000.1| hypothetical protein OsI_09422 [Oryza sativa Indica Group]
Length = 318
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 105/166 (63%), Gaps = 12/166 (7%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY GNLPY+ S+ LA + + T E++YDR T RSRGF FVTM ++E+ ++ I+
Sbjct: 148 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 207
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
DGS GRT++VNF + P+ PKL + ++ HK++ GNL W +TS+ L
Sbjct: 208 LDGSLYSGRTMRVNFADKPK--------PKLPL----YPETEHKLFVGNLSWTVTSEMLT 255
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ FQ ++ A+V+++ TGRSRG+GFV + T E++ AL ++NG
Sbjct: 256 EMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNG 301
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 100 EEEEPKVAASDEA-ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
++ +PK+ E +L+VGNL +++TS L E+F + G V A ++YD T RSRG+GF
Sbjct: 224 DKPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGF 283
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
V + EE EA+ +G+++ GR ++VN
Sbjct: 284 VCYSTKEEMDEALSSLNGTELEGREIRVNL 313
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
Full=CP29A; Flags: Precursor
gi|19754|emb|CAA43427.1| 29kD A ribonucleoprotein [Nicotiana sylvestris]
Length = 273
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 124/194 (63%), Gaps = 11/194 (5%)
Query: 89 QEEEEEEEAVEEEEE--PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
++ E+ ++ VEEE P + +++VGNLP+S S++LAE+F AG V E++Y
Sbjct: 68 EDVEDGDDGVEEERNFSPDL-------KIFVGNLPFSADSAALAELFERAGNVEMVEVIY 120
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN 206
D++T RSRGFGFVTM S EE + A + F+G ++ GR ++VN P +R + +
Sbjct: 121 DKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPE--KRENSSFRGGS 178
Query: 207 SYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266
G DS +++Y GNL WG+ L F Q ++ AKV+++R +GRSRGFGFVT+ +
Sbjct: 179 RGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSS 238
Query: 267 AEDLQSALDAMNGV 280
AE++ +A+++++GV
Sbjct: 239 AEEVNNAIESLDGV 252
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + +L +F+E G V A++VYDR + RSRGFGFVT S EE AI
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 174 FDGSQIGGRTVKVN 187
DG + GR ++V+
Sbjct: 249 LDGVDLNGRAIRVS 262
>gi|225456840|ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 149/294 (50%), Gaps = 56/294 (19%)
Query: 32 LPSLFKTKSP---------KPLKLEKAQN------PSA-LHLSLLSLSYFRQFSASFDGF 75
LP++F TK+P KP+KL + + PS L LS S + + D
Sbjct: 22 LPTIFSTKTPHSYLPIPPHKPIKLLLSCSQSSLFSPSLFLKSKTLSSSVVTFVAQTSDWA 81
Query: 76 QVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASD------------------------- 110
Q ED+ E EQEE+ E EE E P ASD
Sbjct: 82 QQEEDNTVIIEEEQEEKVTWEN-EEVEGPDAQASDWESEGEGAVTEAISDDGVVDDGEDS 140
Query: 111 -----EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
E A+++VGNLPY + S LA +F +AG V AE++Y+R TDRSRGFGFV+M +VE
Sbjct: 141 YSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVE 200
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
EA++A+ +F ++ GR + VN PRG + P++ + ++Y GNL W
Sbjct: 201 EAEKAVDMFHRYELDGRLLTVN-KAAPRGSQ-PERPPRV-------FEPAFRMYVGNLPW 251
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ S L F ++ A+V+F+R TGRSRGFGFVT + +L+ A+ A +G
Sbjct: 252 DVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDG 305
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 55/79 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNLP+ + S+ L +VF+E G V A +V+DR T RSRGFGFVTM S E ++AI
Sbjct: 241 AFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAI 300
Query: 172 RLFDGSQIGGRTVKVNFPE 190
DG + GRT++VN E
Sbjct: 301 AATDGQTLDGRTIRVNVAE 319
>gi|1015370|gb|AAA79045.1| 24 kDa RNA binding protein, partial [Spinacia oleracea]
Length = 220
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 118/191 (61%), Gaps = 15/191 (7%)
Query: 99 EEEEEPKVAASDEAAR---------LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E+E V D+A R ++VGNLP+++ S+ LA +F AGTV E++YD++
Sbjct: 15 EFEQEEDVMGDDDAGRQPNFSPDLKIFVGNLPFNVDSAELAGLFGAAGTVEMVEVIYDKL 74
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
T RSRGFGFVTM SVEE + A + F+ ++ GRT++ V + P++++
Sbjct: 75 TGRSRGFGFVTMSSVEEVEAAAQQFNNYELDGRTLR-----VTEDSHKDMTLPRVESECD 129
Query: 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
F S ++++ GNL W + L+ F ++ AKVI++R TGRSRGFGFVT+ +A +
Sbjct: 130 SF-GSSNRVHVGNLSWKVDDDALKTLFSETGDVVEAKVIYDRDTGRSRGFGFVTYNSANE 188
Query: 270 LQSALDAMNGV 280
+ +A+++++GV
Sbjct: 189 VNTAIESLDGV 199
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R++VGNL + + +L +F+E G V A+++YDR T RSRGFGFVT S E AI
Sbjct: 136 RVHVGNLSWKVDDDALKTLFSETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTAIES 195
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
DG + GR+++V E R GPK
Sbjct: 196 LDGVDLNGRSIRVTAAEA-----RQRRGPK 220
>gi|3550467|emb|CAA06469.1| cp31AHv protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 114/189 (60%), Gaps = 18/189 (9%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
EEE E VE EE KV YVGNLPY + S LA++F +AG V +E++Y+R T
Sbjct: 103 EEEVGEYVEPPEEAKV---------YVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRET 153
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQG 210
D+SRGFGFVTM ++EEA++A+ +F + GR + VN PRG R P+ +S
Sbjct: 154 DQSRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVN-KAAPRGA-RVERPPR--DSGSS 209
Query: 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
F +IY GNL W + L + F ++ AKV+++R TGRSRGFGFVT + E+L
Sbjct: 210 F-----RIYVGNLPWQVDDSRLVELFSEHGKVVDAKVVYDRDTGRSRGFGFVTMASQEEL 264
Query: 271 QSALDAMNG 279
A+ A++G
Sbjct: 265 DDAIAALDG 273
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 53/77 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L E+F+E G V A++VYDR T RSRGFGFVTM S EE +AI
Sbjct: 211 RIYVGNLPWQVDDSRLVELFSEHGKVVDAKVVYDRDTGRSRGFGFVTMASQEELDDAIAA 270
Query: 174 FDGSQIGGRTVKVNFPE 190
DG + GR ++VN E
Sbjct: 271 LDGQSLEGRALRVNVAE 287
>gi|19032262|emb|CAD18922.1| RNA-binding protein precursor [Persea americana]
Length = 315
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 118/191 (61%), Gaps = 9/191 (4%)
Query: 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR 148
++EEE E +EE +A E +++VGNLP+ + S+ LA++F +AG V SAE++Y+R
Sbjct: 112 EDEEESGEVGFADEEDSYSAPPEEVKIFVGNLPFDLESADLADLFNKAGVVESAEVIYNR 171
Query: 149 VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
TD+SRGFGFV+M +VEE +AI +FD I GRT+ VN PRG RA P+
Sbjct: 172 ETDQSRGFGFVSMSTVEEVVKAIEMFDRYDINGRTLTVN-KAAPRGS-RAERPPRD---- 225
Query: 209 QGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
+ ++Y GN+ W + + L F + A+++F+R TGRSRGFGFVT +
Sbjct: 226 ---FEPAFRVYVGNIPWQVDNLRLEQLFSEYGKVEEARIVFDRETGRSRGFGFVTMSSQI 282
Query: 269 DLQSALDAMNG 279
+++ A+ A++G
Sbjct: 283 EMEDAIAALDG 293
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGN+P+ + + L ++F+E G V A IV+DR T RSRGFGFVTM S E ++AI
Sbjct: 229 AFRVYVGNIPWQVDNLRLEQLFSEYGKVEEARIVFDRETGRSRGFGFVTMSSQIEMEDAI 288
Query: 172 RLFDGSQIGGRTVKVNFP-EVPRGG 195
DGS + GR +KV+ E PR G
Sbjct: 289 AALDGSDLDGRAIKVSMAQERPRRG 313
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 107/168 (63%), Gaps = 11/168 (6%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A+L+VGNLPY + S LA +F +AG V AE++Y+R TD+SRGFGFVTM +VEEA++A+
Sbjct: 136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPK-LQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+++ + GR + VN + R GER P+ + SY +IY GN+ WG+
Sbjct: 196 MYNRYDVNGRLLTVN--KAARRGERPERPPRTFEQSY--------RIYVGNIPWGIDDAR 245
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++SA+V+++R TGRSRGFGFVT + ++ A+ ++G
Sbjct: 246 LEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDG 293
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 56/81 (69%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+++ R+YVGN+P+ + + L ++F+E G V SA +VYDR T RSRGFGFVTM S E +
Sbjct: 227 EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSD 286
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
AI DG + GRT++VN E
Sbjct: 287 AIANLDGQSLDGRTIRVNVAE 307
>gi|133246|sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor
gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco
gi|19750|emb|CAA37880.1| unnamed protein product [Nicotiana sylvestris]
Length = 276
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 110/182 (60%), Gaps = 16/182 (8%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
EE +EP E A+L+VGNLPY + S LA++F +AG V AE++Y+R TDRSRGFGF
Sbjct: 88 EEYQEPS-----EDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGF 142
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK-LQNSYQGFVDSPHK 217
VTM +VEEA +A+ L+ + GR + VN PRG R P+ Q +Y +
Sbjct: 143 VTMSTVEEADKAVELYSQYDLNGRLLTVN-KAAPRGS-RPERAPRTFQPTY--------R 192
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
IY GN+ W + L F ++SA+V+F+R +GRSRGFGFVT + ++ A+ +
Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANL 252
Query: 278 NG 279
+G
Sbjct: 253 DG 254
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGN+P+ + + L +VF+E G V SA +V+DR + RSRGFGFVTM S E EAI
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 174 FDGSQIGGRTVKVN 187
DG + GRT++VN
Sbjct: 252 LDGQTLDGRTIRVN 265
>gi|356513816|ref|XP_003525605.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 299
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 104/169 (61%), Gaps = 6/169 (3%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +++VGNLP+ + S +LA +F +AGTV AE++Y+R TDRSRGFGFVTM ++EE K+A
Sbjct: 115 EEDKIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKA 174
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ +F G ++ GR + VN P+G + ++ G ++Y GNL W +
Sbjct: 175 VEMFSGYELNGRVLTVN-KAAPKGAQPERPPRPPRSFSSGL-----RVYVGNLPWEVDDA 228
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F + A+V+++R TGRSRGFGFVT + D+ A+ A++G
Sbjct: 229 RLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDG 277
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVTM S + +AI
Sbjct: 215 RVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 274
Query: 174 FDGSQIGGRTVKVNFPE 190
DG + GR ++VN +
Sbjct: 275 LDGQSLDGRAIRVNVAQ 291
>gi|326493824|dbj|BAJ85374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 114/189 (60%), Gaps = 18/189 (9%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
EEE E VE EE KV YVGNLPY + S LA++F +AG V +E++Y+R T
Sbjct: 103 EEEVGEYVEPPEEAKV---------YVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRET 153
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQG 210
D+SRGFGFVTM ++EEA++A+ +F + GR + VN PRG R P+ +S
Sbjct: 154 DQSRGFGFVTMSTIEEAEKAVEMFHRYDVNGRLLTVN-KAAPRGA-RVERPPR--DSGSS 209
Query: 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
F +IY GNL W + L + F ++ A+V+++R TGRSRGFGFVT + E+L
Sbjct: 210 F-----RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 264
Query: 271 QSALDAMNG 279
A+ A++G
Sbjct: 265 DDAIAALDG 273
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 52/77 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L E+F+E G V A +VYDR T RSRGFGFVTM S EE +AI
Sbjct: 211 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 270
Query: 174 FDGSQIGGRTVKVNFPE 190
DG + GR ++VN E
Sbjct: 271 LDGQSLEGRALRVNVAE 287
>gi|149391365|gb|ABR25700.1| chloroplast 28 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 186
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 107/169 (63%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V +E++Y+R TDRSRGFGFVTM +VEEA++A
Sbjct: 5 EEAKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKA 64
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ +F + GR + VN + A G +++ + F S +IY GNL W +
Sbjct: 65 VEMFHRYDVDGRLLTVN--------KAAPRGARVERPPRQFGPS-FRIYVGNLPWQVDDS 115
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++ A+V+++R TGRSRGFGFVT T E+L A+ A++G
Sbjct: 116 RLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDG 164
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L ++F+E G V A +VYDR T RSRGFGFVTM + EE +AI
Sbjct: 102 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAA 161
Query: 174 FDGSQIGGRTVKVNFPE--VPRGG 195
DG + GR ++VN E PR G
Sbjct: 162 LDGQSLDGRALRVNVAEERPPRRG 185
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 122/200 (61%), Gaps = 10/200 (5%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E EE+ + PK + +L+VGNLP+++ S+ LA++F AG V E++YD++
Sbjct: 68 EFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKI 127
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF-PEVPRGGERAAMGPK----- 203
T RSRGFGFVTM SV E + A + F+G ++ GR ++VN P P+ + + GP+
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGS 187
Query: 204 ----LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF 259
S +++Y GNL WG+ L F Q ++ A+VI++R +GRS+GF
Sbjct: 188 SGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGF 247
Query: 260 GFVTFETAEDLQSALDAMNG 279
GFVT+++++++Q+A+ +++G
Sbjct: 248 GFVTYDSSQEVQNAIKSLDG 267
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 50/74 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + +L +F+E G V A ++YDR + RS+GFGFVT S +E + AI+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 174 FDGSQIGGRTVKVN 187
DG+ + GR ++V+
Sbjct: 265 LDGADLDGRQIRVS 278
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
gi|12230623|sp|Q9ZUU4.1|ROC1_ARATH RecName: Full=Ribonucleoprotein At2g37220, chloroplastic; Flags:
Precursor
gi|13877809|gb|AAK43982.1|AF370167_1 putative RNA-binding protein [Arabidopsis thaliana]
gi|4056477|gb|AAC98043.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|15081717|gb|AAK82513.1| At2g37220/F3G5.1 [Arabidopsis thaliana]
gi|16323482|gb|AAL15235.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20197716|gb|AAM15222.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|330254275|gb|AEC09369.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 122/200 (61%), Gaps = 10/200 (5%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E EE+ + PK + +L+VGNLP+++ S+ LA++F AG V E++YD++
Sbjct: 68 EFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKI 127
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF-PEVPRGGERAAMGPK----- 203
T RSRGFGFVTM SV E + A + F+G ++ GR ++VN P P+ + + GP+
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGS 187
Query: 204 ----LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF 259
S +++Y GNL WG+ L F Q ++ A+VI++R +GRS+GF
Sbjct: 188 SGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGF 247
Query: 260 GFVTFETAEDLQSALDAMNG 279
GFVT+++++++Q+A+ +++G
Sbjct: 248 GFVTYDSSQEVQNAIKSLDG 267
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 50/74 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + +L +F+E G V A ++YDR + RS+GFGFVT S +E + AI+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 174 FDGSQIGGRTVKVN 187
DG+ + GR ++V+
Sbjct: 265 LDGADLDGRQIRVS 278
>gi|357137588|ref|XP_003570382.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 305
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 36/223 (16%)
Query: 82 QDEPETEQEEEEEE--EAVEEEEEPKVAASD----------------------EAARLYV 117
Q+E EQ E+E EAV+EEE+ + A + A +LY
Sbjct: 78 QEEAAAEQPREDEPIGEAVQEEEQDQGGAVEASSGSVDDYGDGAGTGAAEAASSATKLYF 137
Query: 118 GNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
GNLPY+ S+ LA + + T E++YDR T RSRGF FVTM ++E+ + I+ DG+
Sbjct: 138 GNLPYNCDSALLAGIVQDHATPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKNLDGT 197
Query: 178 QIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQ 237
GRT++VN + P+ E + ++ HK++ GNL W +T + L DAFQ
Sbjct: 198 LYSGRTMRVNMADKPKPKEPL------------YPETEHKLFVGNLSWTVTPEMLTDAFQ 245
Query: 238 GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
++ A+V+++ TGRSRG+GFV + T E++ A++ +NG
Sbjct: 246 QCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGT 288
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++T L + F + G V A ++YD T RSRG+GFV + EE +AI
Sbjct: 225 KLFVGNLSWTVTPEMLTDAFQQCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 284
Query: 174 FDGSQIGGRTVKVNF 188
+G++I GR ++VN
Sbjct: 285 LNGTEIEGREIRVNL 299
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K+Y GNL + S L Q +V+++R TGRSRGF FVT T ED + +
Sbjct: 134 KLYFGNLPYNCDSALLAGIVQDHATPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 193
Query: 277 MNGVV 281
++G +
Sbjct: 194 LDGTL 198
>gi|255544262|ref|XP_002513193.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223547691|gb|EEF49184.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 256
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 106/172 (61%), Gaps = 3/172 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+S+ A RLY+GN+P ++ + L ++ E G V AE++YD+ + RSR F FVTM +VE+A
Sbjct: 75 SSEAAKRLYIGNIPRTVDNDELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMRTVEDA 134
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
I +G+QIGGR +KVN E P + LQ FVDSPHK+Y GNL +
Sbjct: 135 NAVIEKLNGTQIGGREIKVNITEKPLASGDLSF---LQLEESQFVDSPHKVYVGNLAKTV 191
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
TS+ L++ F + +LSAKV T +S G+GFV+F ED+++A+ + N
Sbjct: 192 TSEILKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVEAAISSFNN 243
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++TS L F+E G V SA++ T +S G+GFV+ E+ +
Sbjct: 177 DSPHKVYVGNLAKTVTSEILKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVEA 236
Query: 170 AIRLFDGSQIGGRTVKVN 187
AI F+ S + G+ ++VN
Sbjct: 237 AISSFNNSLLEGQKIRVN 254
>gi|224119514|ref|XP_002318093.1| predicted protein [Populus trichocarpa]
gi|222858766|gb|EEE96313.1| predicted protein [Populus trichocarpa]
Length = 327
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 106/169 (62%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+++VGNLPY + S LA +F +AGTV AE++Y+R TD SRGFGFVTM +VEE+++A
Sbjct: 147 EEAKIFVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVTMSTVEESEKA 206
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + GR + VN PRG R P++ S G+ +IY GNL W + S
Sbjct: 207 VEMLHRYDLDGRFLTVN-KAAPRGS-RPERPPRV--SEPGY-----RIYVGNLPWDVDSG 257
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++SA+V+F+R T RSRGFGFVT T +L A+ A++G
Sbjct: 258 RLEQIFSEHGKVVSARVVFDRETNRSRGFGFVTMSTESELNDAIAALDG 306
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V S+ R+YVGNLP+ + S L ++F+E G V SA +V+DR T+RSRGFGFVT
Sbjct: 233 ERPPRV--SEPGYRIYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVT 290
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
M + E +AI DG + GR ++VN E
Sbjct: 291 MSTESELNDAIAALDGQNLDGRPIRVNVAE 320
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
gi|9759027|dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|14532488|gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|18655365|gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|332008535|gb|AED95918.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
Length = 289
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 149/284 (52%), Gaps = 30/284 (10%)
Query: 11 SSSLCNKLYNLQAITQIPTNHL---PSLFKTKSPKP--LKLEKAQNPSALHLSLLSLSYF 65
+SS+ L A+T ++ L PS+F S + + P L LSL S +
Sbjct: 2 TSSVLTPSLKLLAMTNSSSSTLFCIPSIFNISSSESHRFNFSLSSRPVNLTLSLKSKT-L 60
Query: 66 RQFSASFDGFQVTEDSQDEPETEQEEEEE----------EEAVEEEEEPKVAASDEAARL 115
R S VT SQ E+EE E+ +E+ E E+ E A+L
Sbjct: 61 RNSSPV-----VTFVSQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKL 115
Query: 116 YVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
+VGNLPY + S +LA +F +AGTV +E++Y+R TD+SRGFGFVTM +VEEA++A+ F+
Sbjct: 116 FVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFN 175
Query: 176 GSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDA 235
++ GR + VN PRG R P++ D+ +IY GNL W + S L
Sbjct: 176 SFEVNGRRLTVN-RAAPRGS-RPERQPRV-------YDAAFRIYVGNLPWDVDSGRLERL 226
Query: 236 FQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F ++ A+V+ +R TGRSRGFGFV ++ A+ A++G
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDG 270
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E +P+V D A R+YVGNLP+ + S L +F+E G V A +V DR T RSRGFGFV
Sbjct: 197 ERQPRVY--DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQ 254
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
M + E AI DG + GR +KVN E
Sbjct: 255 MSNENEVNVAIAALDGQNLEGRAIKVNVAE 284
>gi|356557128|ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGN+P ++T+ LA++ E G V AE++YD+ + RSR F FVTM +VE+A I
Sbjct: 71 RLYVGNIPRTVTNDELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIEK 130
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G+++GGR +KVN E P P LQ F+DSPHK+Y GNL +T+ L+
Sbjct: 131 LNGTELGGREIKVNVTEKPLSTLDL---PLLQAEESEFIDSPHKVYVGNLAKTVTTDTLK 187
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F + +LSAKV T +S G+GFVTF + ED+++A+ + N
Sbjct: 188 NFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDVEAAISSFNN 233
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++T+ +L F+E G V SA++ T +S G+GFVT S E+ +
Sbjct: 167 DSPHKVYVGNLAKTVTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDVEA 226
Query: 170 AIRLFDGSQIGGRTVKVN 187
AI F+ S + G+T++VN
Sbjct: 227 AISSFNNSLLEGQTIRVN 244
>gi|224055617|ref|XP_002298568.1| predicted protein [Populus trichocarpa]
gi|118486956|gb|ABK95311.1| unknown [Populus trichocarpa]
gi|222845826|gb|EEE83373.1| predicted protein [Populus trichocarpa]
Length = 276
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 139/253 (54%), Gaps = 24/253 (9%)
Query: 32 LPSLFKTKSPKPLKLEKAQN-PSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQE 90
+ S F + + KP+K+ + + PS + L + S F +Q +Q+
Sbjct: 21 IKSPFISITSKPIKVVFSTSFPSWVSLKTSNFSTFNTIPLV---------AQTSDWAQQD 71
Query: 91 EEEE----EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
EE+ EE+ + E E A+LYVGNLPY + S +LA++F +AGTV AEI+Y
Sbjct: 72 EEDTVTLGEESFGDGSEETFPEPPEEAKLYVGNLPYDVNSENLAQLFDQAGTVEVAEIIY 131
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN 206
+R TD+SRGFGFVTM +V+EA++AI F + GR + VN PRG P+ +
Sbjct: 132 NRETDQSRGFGFVTMSTVDEAEKAIEKFHRYDLNGRFLTVN-KAAPRGSR-----PERPS 185
Query: 207 SYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266
++ ++IY GNL W + L F +++A+V+ +R TGRSRGFGFVT +
Sbjct: 186 VFK----IAYRIYVGNLPWQVDDARLEQVFSEHGQVVNARVVCDRETGRSRGFGFVTMSS 241
Query: 267 AEDLQSALDAMNG 279
+L A+ A++G
Sbjct: 242 ETELNDAIAALDG 254
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNLP+ + + L +VF+E G V +A +V DR T RSRGFGFVTM S E +AI
Sbjct: 190 AYRIYVGNLPWQVDDARLEQVFSEHGQVVNARVVCDRETGRSRGFGFVTMSSETELNDAI 249
Query: 172 RLFDGSQIGGRTVKVNFP-EVPRGG 195
DG + GR + VN E PR G
Sbjct: 250 AALDGQSLDGRAITVNIAQERPRRG 274
>gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223550401|gb|EEF51888.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 319
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 105/167 (62%), Gaps = 9/167 (5%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A+++VGNLPY + S LA +F +AGTV AE++Y+R TD SRGFGFV+M +VEEA++A+
Sbjct: 141 AKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVSMSTVEEAEKAVE 200
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+F + GR + VN PRG R P++ + ++IY GNL W + + L
Sbjct: 201 MFHRHDLDGRLLTVN-KAAPRGS-RPERPPRV-------FEPGYRIYVGNLPWDVDNARL 251
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F ++ A+V+++R TGRSRGFGFVT T +L A+ A++G
Sbjct: 252 EQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAALDG 298
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + ++ L ++F+E G V A +VYDR T RSRGFGFVTM + E +AI
Sbjct: 236 RIYVGNLPWDVDNARLEQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAA 295
Query: 174 FDGSQIGGRTVKVNFPE 190
DG + GR ++VN E
Sbjct: 296 LDGRSLDGRAIRVNVAE 312
>gi|449440111|ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449483348|ref|XP_004156563.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 278
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 122/189 (64%), Gaps = 7/189 (3%)
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR 152
+EE +E + + A D +L+VGNLP+++ S+ LA +F AG V E++YD+ T R
Sbjct: 75 QEEGTLEVDGDDSSYAPD--LKLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGR 132
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF-PEVPRGGERAAMGPKLQNSYQGF 211
SRGFGFVTM +V E + A + F+G ++ GR ++VN+ P P+ + + G + + +
Sbjct: 133 SRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSFRGSRNASRF--- 189
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
D+ ++++ NL WG+ L + F+ + +L AKV+++R +G+SRGFGFVT+ +AE++
Sbjct: 190 -DNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVN 248
Query: 272 SALDAMNGV 280
A+ +++GV
Sbjct: 249 EAIQSLDGV 257
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D R++V NL + + +L +F E G V A++VYDR + +SRGFGFVT S EE E
Sbjct: 190 DNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNE 249
Query: 170 AIRLFDGSQIGGRTVKV 186
AI+ DG + GR ++V
Sbjct: 250 AIQSLDGVDLDGRPIRV 266
>gi|219885617|gb|ACL53183.1| unknown [Zea mays]
Length = 275
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 150/284 (52%), Gaps = 23/284 (8%)
Query: 1 MAASTVSMAASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLL 60
M+ ++MA + + + L +PT LP L + PL L + L L+ L
Sbjct: 4 MSLRCLAMAMADTALPPAHKL-----LPTVSLPLLSSSTRAAPLLLFARRR---LPLAPL 55
Query: 61 SLSYFRQFSASFDGFQVTEDSQDEP-ETEQEEEEEEEAVEEEEEPKVAASD--EAARLYV 117
S + S D E+ EP E E E EE A E E + AA + E A++YV
Sbjct: 56 VTSSDAVEAKSADE---EEEKAGEPVEMEAGEFEEVLASGGEGEGQYAAVEPPEEAKVYV 112
Query: 118 GNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
GNLPY + S LA++F +AG V AE++Y+R T +SRGFGFVTM +VEEA +AI +F
Sbjct: 113 GNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEMFSRY 172
Query: 178 QIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQ 237
I GR + VN R R G +++ + F + + Y GNL W + L F
Sbjct: 173 DISGRLLNVN-----RASSR---GTRMERPQRQFAPA-FRAYVGNLPWQVDDSRLVQLFS 223
Query: 238 GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
++ AKV+++R TGRSRGFGFV+ + E+L A+ A++G V
Sbjct: 224 EHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQV 267
>gi|2104687|emb|CAA66479.1| RNA- or ssDNA-binding protein [Vicia faba var. minor]
Length = 289
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 107/182 (58%), Gaps = 12/182 (6%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+E E VA D +LY GNLPYS+ S+ LA + E G+ E++YDR T +SRGF F
Sbjct: 103 KENGEEIVAEEDTRTKLYFGNLPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGKSRGFAF 162
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
TM VE+ K I DG + GRT++VNF + P+ E + ++ +K+
Sbjct: 163 ATMTCVEDCKAVIENLDGKEFMGRTLRVNFSDKPKAKESL------------YPETEYKL 210
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ GNL W +TS+ L +AFQ ++ A+VI++ TG SRG+GFV++ ++++AL MN
Sbjct: 211 FIGNLSWKVTSEILTEAFQEHGTVVGARVIYDGETGNSRGYGFVSYANKSEMEAALTIMN 270
Query: 279 GV 280
V
Sbjct: 271 DV 272
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++GNL + +TS L E F E GTV A ++YD T SRG+GFV+ + E + A+ +
Sbjct: 209 KLFIGNLSWKVTSEILTEAFQEHGTVVGARVIYDGETGNSRGYGFVSYANKSEMEAALTI 268
Query: 174 FDGSQIGGRTVKVNFPEVPR 193
+ ++ GR ++V+ + R
Sbjct: 269 MNDVELEGRALRVSLAQGKR 288
>gi|255636284|gb|ACU18482.1| unknown [Glycine max]
Length = 280
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 103/168 (61%), Gaps = 6/168 (3%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +++VGNLP+ + S +LA +F +AGTV AE++Y+R TDRSRGFGFVTM ++EE K+A
Sbjct: 115 EEDKIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKA 174
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ +F G ++ GR + VN P+G + ++ G ++Y GNL W +
Sbjct: 175 VEMFSGYELNGRVLTVN-KAAPKGAQPERPPRPPRSFSSGL-----RVYVGNLPWEVDDA 228
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L F + A+V+++R TGRSRGFGFVT + D+ A+ A++
Sbjct: 229 RLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALD 276
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
KI+ GNL + + S+ L F GQ G + A+VI+ R T RSRGFGFVT T E+L+ A++
Sbjct: 118 KIFVGNLPFDIDSENLASLF-GQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVE 176
Query: 276 AMNG 279
+G
Sbjct: 177 MFSG 180
>gi|357457543|ref|XP_003599052.1| 30S ribosomal protein [Medicago truncatula]
gi|355488100|gb|AES69303.1| 30S ribosomal protein [Medicago truncatula]
Length = 235
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 103/168 (61%), Gaps = 4/168 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGN+P ++++ L ++ E G V AE++YD+ + RSR F FVTM +VE+A A
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEK 120
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G++IGGR +KVN E P E G +Q FVDSP+K+Y GNL +TS L+
Sbjct: 121 LNGTEIGGREIKVNITEKPLTTE----GLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLK 176
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F + LSAKV T +S GFGFVTF + ED+++A+ + N +
Sbjct: 177 KFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNAL 224
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++TS SL + F+E G SA++ T +S GFGFVT S E+ +
Sbjct: 156 DSPYKVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEA 215
Query: 170 AIRLFDGSQIGGRTVKVN 187
AI F+ + + G+ ++VN
Sbjct: 216 AISSFNNALLEGQKIRVN 233
>gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNLPY + S LA++F EAG V AE++Y+R TD+SRGFGF+TM +VEEA++A
Sbjct: 91 EEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKA 150
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ +F+ + GR + VN + A G + + Q F S +IY GNL W +
Sbjct: 151 VEMFNRYDLNGRFLTVN--------KAAPRGSRPERPPQAFEPS-FRIYVGNLPWQVDDA 201
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++ A+V+++R T RSRGFGFVT + +L A+ A++G
Sbjct: 202 RLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDG 250
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + + L +VF+E G V A +VYDR T RSRGFGFVTM S E +AI
Sbjct: 188 RIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAA 247
Query: 174 FDGSQIGGRTVKVNFP-EVPRGG 195
DG + GR ++VN E PR G
Sbjct: 248 LDGQSLDGRAIRVNVAEERPRRG 270
>gi|356508744|ref|XP_003523114.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 305
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 144/261 (55%), Gaps = 24/261 (9%)
Query: 33 PSLFKTKSPKPLKLEKAQNPSALHLSLLSLSY----FRQFSASFDGFQVTEDS----QDE 84
PSLF S KPL L+ + S++ LSL + ++ + + + D Q ED QDE
Sbjct: 33 PSLFSPPS-KPLTLQFSCINSSVSLSLAARAHRSPLVTRVAQTSDWAQQEEDDTATFQDE 91
Query: 85 ----PETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
ET+ E E+ E A E A+L+VGNLPY + S LA +F +AGTV
Sbjct: 92 EQGLSETQAGLSSWEPNGEDAGEESFAEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVE 151
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGG--ERA 198
AE++Y+R TD+SRGFGFVTM +VEEA+ A+ F GR + VN PRG ER
Sbjct: 152 IAEVIYNRETDQSRGFGFVTMSTVEEAENAVEKFSRYDFDGRLLTVN-KASPRGTRPER- 209
Query: 199 AMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRG 258
P ++S++ + IY GNL W + + L F +++A+V+++R T RSRG
Sbjct: 210 ---PPPRHSFEPSL----SIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRG 262
Query: 259 FGFVTFETAEDLQSALDAMNG 279
FGFVT +++ A+ A++G
Sbjct: 263 FGFVTMSDETEMKDAVAALDG 283
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP+ + ++ L ++F+E G V +A +VYDR T RSRGFGFVTM E K+A+
Sbjct: 222 IYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAAL 281
Query: 175 DGSQIGGRTVKVNFPE-VPRGG 195
DG + GR ++V+ E PR G
Sbjct: 282 DGQSLDGRPIRVSVAEDRPRRG 303
>gi|162463757|ref|NP_001105347.1| nucleic acid binding protein1 [Zea mays]
gi|168526|gb|AAA33486.1| nucleic acid-binding protein [Zea mays]
gi|195637380|gb|ACG38158.1| ribonucleoprotein [Zea mays]
gi|219884029|gb|ACL52389.1| unknown [Zea mays]
gi|414884557|tpg|DAA60571.1| TPA: nucleic acid binding protein1 [Zea mays]
Length = 303
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 107/173 (61%), Gaps = 17/173 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V AE++Y+R TD+SRGFGFVTM +VEEA++A
Sbjct: 123 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKA 182
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGG--ERAAM--GPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ +F + GR + VN PRG +R GP L +IY GNL W
Sbjct: 183 VEMFHRYDVNGRLLTVN-KAAPRGSRVDRPPRQSGPSL------------RIYVGNLPWQ 229
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L + F ++ A+V+++R TGRSRGFGFVT + ++L A+ A++G
Sbjct: 230 VDDSRLVELFSEHGKVVDARVVYDRETGRSRGFGFVTMASQDELDDAIAALDG 282
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L E+F+E G V A +VYDR T RSRGFGFVTM S +E +AI
Sbjct: 220 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRETGRSRGFGFVTMASQDELDDAIAA 279
Query: 174 FDGSQIGGRTVKVNFP-EVPRGG 195
DG + GR ++VN E PR G
Sbjct: 280 LDGQSLDGRALRVNVAEERPRRG 302
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 143/275 (52%), Gaps = 26/275 (9%)
Query: 8 MAASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNP-SALHLS--LLSLSY 64
MAASS C + A T + NH ++ +K+ + P +L LS L
Sbjct: 1 MAASSCYC-----IPANTHLNLNHKTNVLPLLRMSSVKI--SMRPRCSLQLSHVLARRKV 53
Query: 65 FRQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSM 124
FR + + + Q+TE Q PE E+ +E + EEE P+ +LYVGNLP S
Sbjct: 54 FRITALAQEETQITE--QSVPEEEETNKERQPKNEEELPPR------RTKLYVGNLPRSC 105
Query: 125 TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184
+ L ++F E GTV S E+V + T SRGF FVTM +V+EAK AI GS +GGR +
Sbjct: 106 DIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMSTVKEAKSAIEKLQGSDLGGRDM 165
Query: 185 KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS 244
VNFP A + K + + ++++P++++ GNL W + + L+ F + +
Sbjct: 166 IVNFP--------AKVLSKKKETDDSYIETPYQLFVGNLAWSVKKEILKSLFSQHGNVSA 217
Query: 245 AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AKVI+ G R FGFV + +++ A+ +++G
Sbjct: 218 AKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVSLHG 252
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +S+ L +F++ G V++A+++Y R FGFV + S E ++AI
Sbjct: 190 QLFVGNLAWSVKKEILKSLFSQHGNVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVS 249
Query: 174 FDGSQIGGRTVKVNFPE------VPRGGERAAMGPK--LQNSYQ-----GFVDSPHKIYA 220
G + GR +KV V E P +++S FV S + +Y
Sbjct: 250 LHGKEFHGRNLKVRQARPTSKDMVVSDVEENIAKPSTMVEDSMTETVKATFVGSAYGVYV 309
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
NL + ++ L + F +L A+V++ R GRSR +GFV F + ++++A+ A++
Sbjct: 310 SNLSLSVKNKALSELFSQHGNVLDARVLYARKAGRSRPYGFVNFSSQAEVEAAIAALD 367
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL S+ + +L+E+F++ G V A ++Y R RSR +GFV S E + AI
Sbjct: 307 VYVSNLSLSVKNKALSELFSQHGNVLDARVLYARKAGRSRPYGFVNFSSQAEVEAAIAAL 366
Query: 175 DGSQIGGRTVKV 186
D + R + V
Sbjct: 367 DKKEFYERKLVV 378
>gi|133247|sp|P28644.1|ROC1_SPIOL RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP
Length = 233
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 11/170 (6%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNLPY + S LA +F AG V AE++Y+R TDRSRGFGFVTM +VEEA++A
Sbjct: 53 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 112
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGG-ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
+ L +G + GR + VN PRG ERA +G + ++Y GNL W + +
Sbjct: 113 VELLNGYDMDGRQLTVN-KAAPRGSPERAP---------RGDFEPSCRVYVGNLPWDVDT 162
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++SA+V+ +R TGRSRGFGFVT + ++ A+ A++G
Sbjct: 163 SRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDG 212
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 53/79 (67%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ R+YVGNLP+ + +S L ++F+E G V SA +V DR T RSRGFGFVTM S E +AI
Sbjct: 148 SCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAI 207
Query: 172 RLFDGSQIGGRTVKVNFPE 190
DG + GR V+VN E
Sbjct: 208 AALDGQTLDGRAVRVNVAE 226
>gi|388508598|gb|AFK42365.1| unknown [Medicago truncatula]
Length = 235
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 103/168 (61%), Gaps = 4/168 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGN+P ++++ L ++ E G V AE++YD+ + RSR F FVTM +VE+A A
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEK 120
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G++IGGR +KVN E P E G +Q FVDSP+K+Y GNL +TS L+
Sbjct: 121 LNGTEIGGREIKVNITEKPLTTE----GLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLK 176
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F + LSAKV T +S GFGFVTF + ED+++A+ + N +
Sbjct: 177 KFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNAL 224
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++TS SL + F+E G SA++ T +S GFGFVT S E+ +
Sbjct: 156 DSPYKVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEA 215
Query: 170 AIRLFDGSQIGGRTVKVN 187
AI F+ + + G+ ++VN
Sbjct: 216 AISSFNNALLEGQKIRVN 233
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera]
Length = 1122
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 124/232 (53%), Gaps = 43/232 (18%)
Query: 82 QDEPETEQEEEEEEEAV----EEEEEPKVAASD--------------------------- 110
Q+E T EEE+EE V EE E P ASD
Sbjct: 878 QEEDNTVIIEEEQEEKVTWENEEVEGPDAQASDWESEGEGAVTEAISDDGVVDDGEDSYS 937
Query: 111 ---EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
E A+++VGNLPY + S LA +F +AG V AE++Y+R TDRSRGFGFV+M +VEEA
Sbjct: 938 EPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEA 997
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++A+ +F ++ GR + VN PRG + P++ + ++Y GNL W +
Sbjct: 998 EKAVDMFHRYELDGRLLTVN-KAAPRGSQ-PERPPRV-------FEPAFRMYVGNLPWDV 1048
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
S L F ++ A+V+F+R TGRSRGFGFVT + +L+ A+ A +G
Sbjct: 1049 DSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDG 1100
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + A R+YVGNLP+ + S+ L +VF+E G V A +V+DR T RSRGFGFVT
Sbjct: 1027 ERPPRVF--EPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVT 1084
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
M S E ++AI DG + GRT++VN E
Sbjct: 1085 MSSQTELEDAIAATDGQTLDGRTIRVNVAE 1114
>gi|357440407|ref|XP_003590481.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|355479529|gb|AES60732.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|388503166|gb|AFK39649.1| unknown [Medicago truncatula]
Length = 280
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 142/264 (53%), Gaps = 30/264 (11%)
Query: 32 LPSLFKTKSPKPLK--LEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQ 89
LPSLF SP+ + NP+ S S+S S S S E +Q
Sbjct: 10 LPSLFTKNSPQCFSSLPSLSLNPNFKPFSFSSVSLRPSLSISHRFISRVAVSS---EFDQ 66
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
EE+ ++ ++ P + + RL+VGNLP+S+ S+ LAE+F AG V E++YD+
Sbjct: 67 EEDTFDDG---DDTPSYSPN---QRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKS 120
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN-------------FPEVPR-GG 195
T RSRGFGFVTM S E + A + +G + GR ++VN F E PR GG
Sbjct: 121 TGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGG 180
Query: 196 ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 255
+R P+ G D ++++ GNL WG+ + L F Q +L AKVI++R +GR
Sbjct: 181 DRPRGPPR-----GGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGR 235
Query: 256 SRGFGFVTFETAEDLQSALDAMNG 279
SRGFGFVTF +A+++ SA+ ++G
Sbjct: 236 SRGFGFVTFSSADEVDSAIRTLDG 259
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P+ +SD R++VGNL + + + +L +F E G V A+++YDR + RSRGFGFVT S
Sbjct: 187 PRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSS 246
Query: 164 VEEAKEAIRLFDGSQIGGRTVKV 186
+E AIR DG+ + GR ++V
Sbjct: 247 ADEVDSAIRTLDGADLNGRAIRV 269
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+++ GNL + + S L + F+ + +VI+++ TGRSRGFGFVT +A ++++A
Sbjct: 84 QRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQ 143
Query: 276 AMNGVV 281
+NG V
Sbjct: 144 QLNGYV 149
>gi|226509575|ref|NP_001149184.1| LOC100282806 [Zea mays]
gi|195625314|gb|ACG34487.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 151/282 (53%), Gaps = 23/282 (8%)
Query: 1 MAASTVSMAASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLL 60
M+ +++MA + + + L +PT LP L + PL L + L L+ L
Sbjct: 4 MSLRSLAMAMADTALPPAHKL-----LPTVSLPLLSSSTRAAPLLLFARRR---LPLAPL 55
Query: 61 SLSYFRQFSASFDGFQVTEDSQDEP-ETEQEEEEEEEAVEEEEEPKVAASD--EAARLYV 117
S + S D E+ EP + E E EE A E E + AA + E A++YV
Sbjct: 56 VTSSDAVEAKSADE---EEEKAGEPVDMEAGEFEEVLASGGEGEGQYAAVEPPEEAKVYV 112
Query: 118 GNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
GNLPY + S LA++F +AG V AE++Y+R T +SRGFGFVTM +VEEA +AI +F+
Sbjct: 113 GNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEMFNRY 172
Query: 178 QIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQ 237
I GR + VN R R G +++ + F + + Y GNL W + L F
Sbjct: 173 DISGRLLNVN-----RASSR---GTRMERPQRQFAPA-FRAYVGNLPWQVDDSRLVQLFS 223
Query: 238 GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ AKV+++R TGRSRGFGFV+ + E+L A+ A++G
Sbjct: 224 EHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDG 265
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V A++VYDR T RSRGFGFV+M S EE +AI
Sbjct: 201 AFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAI 260
Query: 172 RLFDGSQIGGRTVKVN 187
DG ++ GR ++VN
Sbjct: 261 SALDGQELDGRPLRVN 276
>gi|413921823|gb|AFW61755.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 149/282 (52%), Gaps = 23/282 (8%)
Query: 1 MAASTVSMAASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLL 60
M+ ++MA + + + L +PT LP L + PL L + L L+ L
Sbjct: 4 MSLRCLAMAMADTALPPAHKL-----LPTVSLPLLSSSTRAAPLLLFARRR---LPLAPL 55
Query: 61 SLSYFRQFSASFDGFQVTEDSQDEP-ETEQEEEEEEEAVEEEEEPKVAASD--EAARLYV 117
S + S D E+ EP E E E EE A E E + AA + E A++YV
Sbjct: 56 VTSSDAVEAKSADE---EEEKAGEPVEMEAGEFEEVLASGGEGEGQYAAVEPPEEAKVYV 112
Query: 118 GNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
GNLPY + S LA++F +AG V AE++Y+R T +SRGFGFVTM +VEEA +AI +F
Sbjct: 113 GNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEMFSRY 172
Query: 178 QIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQ 237
I GR + VN R R G +++ + F + + Y GNL W + L F
Sbjct: 173 DISGRLLNVN-----RASSR---GTRMERPQRQFAPA-FRAYVGNLPWQVDDSRLVQLFS 223
Query: 238 GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ AKV+++R TGRSRGFGFV+ + E+L A+ A++G
Sbjct: 224 EHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDG 265
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V A++VYDR T RSRGFGFV+M S EE +AI
Sbjct: 201 AFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAI 260
Query: 172 RLFDGSQIGGRTVKVN 187
DG ++ GR ++VN
Sbjct: 261 SALDGQELDGRPLRVN 276
>gi|225452270|ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNLPY + S LA++F EAG V AE++Y+R TD+SRGFGF+TM +VEEA++A
Sbjct: 131 EEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKA 190
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ +F+ + GR + VN + A G + + Q F S +IY GNL W +
Sbjct: 191 VEMFNRYDLNGRFLTVN--------KAAPRGSRPERPPQAFEPS-FRIYVGNLPWQVDDA 241
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++ A+V+++R T RSRGFGFVT + +L A+ A++G
Sbjct: 242 RLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDG 290
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + + L +VF+E G V A +VYDR T RSRGFGFVTM S E +AI
Sbjct: 228 RIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAA 287
Query: 174 FDGSQIGGRTVKVNFP-EVPRGG 195
DG + GR ++VN E PR G
Sbjct: 288 LDGQSLDGRAIRVNVAEERPRRG 310
>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 11/170 (6%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNLPY + S LA +F AG V AE++Y+R TDRSRGFGFVTM +VEEA++A
Sbjct: 46 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 105
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGG-ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
+ L +G + GR + VN PRG ERA +G + ++Y GNL W + +
Sbjct: 106 VELLNGYDMDGRQLTVN-KAAPRGSPERAP---------RGDFEPSCRVYVGNLPWDVDT 155
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++SA+V+ +R TGRSRGFGFVT + ++ A+ A++G
Sbjct: 156 SRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDG 205
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 53/79 (67%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ R+YVGNLP+ + +S L ++F+E G V SA +V DR T RSRGFGFVTM S E +AI
Sbjct: 141 SCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAI 200
Query: 172 RLFDGSQIGGRTVKVNFPE 190
DG + GR V+VN E
Sbjct: 201 AALDGQTLDGRAVRVNVAE 219
>gi|168029395|ref|XP_001767211.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681466|gb|EDQ67892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 192
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 109/175 (62%), Gaps = 14/175 (8%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY+GNLP+ S+ LA + E G+V E++YD+ + RSRGF FVTM + E+A+ I
Sbjct: 1 KLYIGNLPWQCDSAQLAGICQEFGSVELVEVIYDQESGRSRGFAFVTMATQEDAENVIER 60
Query: 174 FDGSQIGGRTVKVNFPE-------VPRGG--ERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
DG +GGR +KV+FP+ PRG +R+ P+ D P+K++ GNL
Sbjct: 61 LDGHDVGGRPLKVSFPQSKQNRPSFPRGEGYQRSERAPRPAAR-----DDPNKVFVGNLS 115
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
WG+ + L++ F ++ A+V+++R +GRSRGFGFVT+ ++ +A+D+++G
Sbjct: 116 WGVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAIDSLDG 170
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 56/88 (63%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+ AA D+ +++VGNL + + + +L E+F++ G V A +VYDR + RSRGFGFVT
Sbjct: 95 ERAPRPAARDDPNKVFVGNLSWGVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVT 154
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
V E AI DG++ GR ++VN
Sbjct: 155 YSDVSEVDAAIDSLDGAEFDGRELRVNL 182
>gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 314
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 119/201 (59%), Gaps = 12/201 (5%)
Query: 80 DSQDEPETEQEEEEEEE-AVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGT 138
+SQD E ++ E + E AV E E E A+L+VGNL Y + S +LA +F +AGT
Sbjct: 103 ESQDVSEGDESEGDVSEGAVSERAE--FPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGT 160
Query: 139 VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERA 198
V AE++Y+R TD+SRGFGFVTM SV+EA+ A+ F+ + GR + VN PRG R
Sbjct: 161 VEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-KAAPRGS-RP 218
Query: 199 AMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRG 258
P++ + ++Y GNL W + + L F ++ A+V+++R TGRSRG
Sbjct: 219 ERAPRV-------YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRG 271
Query: 259 FGFVTFETAEDLQSALDAMNG 279
FGFVT ++L A+ A++G
Sbjct: 272 FGFVTMSDVDELNEAISALDG 292
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVT
Sbjct: 219 ERAPRVY--EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 276
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGG 195
M V+E EAI DG + GR ++VN E PR G
Sbjct: 277 MSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRG 313
>gi|558629|emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris]
Length = 287
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 106/175 (60%), Gaps = 15/175 (8%)
Query: 109 SDEA---ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
SDE+ +LY GNLPYS+ S+ LA + + G+ E++YDR T +SRGF FVTM +E
Sbjct: 106 SDESFASTKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIE 165
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ I DG + GRT++VNF P+ E + ++ HK++ GNL W
Sbjct: 166 DCNAVIENLDGKEYLGRTLRVNFSNKPKAKEPL------------YPETEHKLFVGNLSW 213
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T++ L AFQ ++ A+V+++ TGRSRG+GFV F T E++++AL A+N V
Sbjct: 214 SVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGALNDV 268
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +S+T+ L + F E GTV A ++YD T RSRG+GFV + EE + A+
Sbjct: 205 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGA 264
Query: 174 FDGSQIGGRTVKVNFPEVPR 193
+ ++ GR ++V+ E R
Sbjct: 265 LNDVELEGRAMRVSLAEGKR 284
>gi|357439793|ref|XP_003590174.1| 31 kDa ribonucleoprotein [Medicago truncatula]
gi|355479222|gb|AES60425.1| 31 kDa ribonucleoprotein [Medicago truncatula]
Length = 387
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 105/175 (60%), Gaps = 12/175 (6%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
VA D +LY GNLPYS+ S+ LA + E G+ E++YDR T +SRGF FVTM VE
Sbjct: 208 VAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVE 267
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ I+ DG + GRT++VNF + P+ E + ++ +K++ GNL W
Sbjct: 268 DCNAVIQNLDGKEFMGRTLRVNFSDKPKPKEPL------------YPETEYKLFVGNLAW 315
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+TS+ L AFQ ++ A+V+F+ TG+SRG+GFV++ T ++ +AL M+ V
Sbjct: 316 TVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNV 370
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++TS SL + F E GTV A +++D T +SRG+GFV+ + E A+ +
Sbjct: 307 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 366
Query: 174 FDGSQIGGRTVKVNFPEVPR 193
D ++ GRT++V+ + R
Sbjct: 367 MDNVELEGRTLRVSLAQGKR 386
>gi|116786296|gb|ABK24055.1| unknown [Picea sitchensis]
Length = 299
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 103/166 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VGNLP+S+ S+ LAE+F ++G V E++YDR T RSRGF FVTM + +A EA+
Sbjct: 114 KVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADADEAVEK 173
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
F+G + GRT++VN P A G G +S ++++ GNL WG L
Sbjct: 174 FNGYEYQGRTLRVNSGPPPPKDSFAPRGGFRNEKPSGNYNSANRVFVGNLPWGADDLSLE 233
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F ++ AKV+++R TGRSRGFGFVT + ++++ A+ +++G
Sbjct: 234 QLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEAISSLDG 279
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 55/82 (67%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+ A R++VGNLP+ SL ++F++ G V A++VYDR T RSRGFGFVT+ S +E +E
Sbjct: 213 NSANRVFVGNLPWGADDLSLEQLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEE 272
Query: 170 AIRLFDGSQIGGRTVKVNFPEV 191
AI DGS + GR +KV E
Sbjct: 273 AISSLDGSDMDGRQIKVTLAET 294
>gi|168033890|ref|XP_001769447.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679367|gb|EDQ65816.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLP++ S+ LAE+ ++ GTV E++YD+++ RSRGF FVTM + E+A+ I
Sbjct: 45 KLYVGNLPWTCDSAQLAEICSDHGTVDVVEVIYDKISGRSRGFAFVTMATPEDAQAVINA 104
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
DG+ +GGR +KVN+P+ + R + + D +K++ GNL WG L
Sbjct: 105 LDGTDMGGRPLKVNYPQSQKDKPRVERSERPR-------DDANKLFVGNLSWGCDEAALY 157
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F ++ AKV+F+R +GRSRGFGFVT E+A +A++ ++G
Sbjct: 158 SFFSEYGTVVDAKVVFDRDSGRSRGFGFVTMESAAAANAAIENLDG 203
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 63/99 (63%), Gaps = 4/99 (4%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
+ ++++ VE E P+ D+A +L+VGNL + ++L F+E GTV A++V+DR
Sbjct: 121 QSQKDKPRVERSERPR----DDANKLFVGNLSWGCDEAALYSFFSEYGTVVDAKVVFDRD 176
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
+ RSRGFGFVTM S A AI DG+++ GR ++VN
Sbjct: 177 SGRSRGFGFVTMESAAAANAAIENLDGAELDGRRLRVNL 215
>gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 304
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 118/201 (58%), Gaps = 12/201 (5%)
Query: 80 DSQDEPE-TEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGT 138
+SQD E E E + E AV E E E A+L+VGNL Y + S +LA +F +AGT
Sbjct: 93 ESQDVSEGDESEGDVSEGAVSERAE--FPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGT 150
Query: 139 VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERA 198
V AE++Y+R TD+SRGFGFVTM SV+EA+ A+ F+ + GR + VN PRG R
Sbjct: 151 VEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-KAAPRGS-RP 208
Query: 199 AMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRG 258
P++ + ++Y GNL W + + L F ++ A+V+++R TGRSRG
Sbjct: 209 ERAPRV-------YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRG 261
Query: 259 FGFVTFETAEDLQSALDAMNG 279
FGFVT ++L A+ A++G
Sbjct: 262 FGFVTMSDVDELNEAISALDG 282
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVT
Sbjct: 209 ERAPRVY--EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 266
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGG 195
M V+E EAI DG + GR ++VN E PR G
Sbjct: 267 MSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRG 303
>gi|242048706|ref|XP_002462099.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
gi|241925476|gb|EER98620.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
Length = 242
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 112/183 (61%), Gaps = 17/183 (9%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P+V A A +LYVGN+P ++T+ L ++FA GTV AE++YD+ T+RSR FGFVTM
Sbjct: 59 EAPEVVA---ARKLYVGNVPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTM 115
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVN-----FPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
+VEEA A+ +G+++GGR +KVN P + R S FVDS +
Sbjct: 116 STVEEANAAVEALNGTEVGGRKIKVNVTESFLPNIDRSA---------PESEPVFVDSQY 166
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K+Y GNL +T++ L++ F + +LSA V T +S+G+GFVTF + E++++A+
Sbjct: 167 KVYVGNLAKNVTTEVLKNFFSEKGKILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVAT 226
Query: 277 MNG 279
N
Sbjct: 227 FNN 229
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++T+ L F+E G + SA + + T +S+G+GFVT S EE +
Sbjct: 163 DSQYKVYVGNLAKNVTTEVLKNFFSEKGKILSATVSHIPGTSKSKGYGFVTFSSEEEVEA 222
Query: 170 AIRLFDGSQIGGRTVKVN 187
A+ F+ +++ G+ ++VN
Sbjct: 223 AVATFNNAELEGQPIRVN 240
>gi|2443390|dbj|BAA22411.1| Ps16 protein [Triticum aestivum]
Length = 293
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 107/169 (63%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V +E++Y+R TD+SRGFGFVTM ++EEA++A
Sbjct: 113 EEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 172
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ +F + GR + VN PRG R P+ +S F +IY GNL W +
Sbjct: 173 VEMFHRYDVNGRLLTVN-KAAPRGA-RVERPPR--DSGSSF-----RIYVGNLPWQVDDS 223
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + F ++ A+V+++R TGRSRGFGFVT + +L A+ A++G
Sbjct: 224 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQPELDDAIAALDG 272
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 51/77 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L E+F+E G V A +VYDR T RSRGFGFVTM S E +AI
Sbjct: 210 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQPELDDAIAA 269
Query: 174 FDGSQIGGRTVKVNFPE 190
DG + GR ++VN E
Sbjct: 270 LDGQSLEGRALRVNVAE 286
>gi|326487400|dbj|BAJ89684.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511469|dbj|BAJ87748.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511763|dbj|BAJ92026.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514088|dbj|BAJ92194.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527877|dbj|BAJ88990.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534068|dbj|BAJ89384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 103/168 (61%), Gaps = 12/168 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LY GNLPY+ S+ LA + + E++YDR T RSRGF FVTM ++E+ + I
Sbjct: 133 ATKLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVI 192
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ DG+ GRT++VN + P+ +A + P+ + HK++ GNL W +T +
Sbjct: 193 KNLDGTLYSGRTMRVNMADRPK--PKAPLYPETE----------HKLFVGNLSWTVTPEM 240
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L DAFQ ++ A+V+++ TGRSRG+GFV + T E++ A++ +NG
Sbjct: 241 LTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNG 288
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++T L + F G V A ++YD T RSRG+GFV + EE +AI
Sbjct: 226 KLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 285
Query: 174 FDGSQIGGRTVKVNF 188
+G++I GR ++VN
Sbjct: 286 LNGTEIEGREIRVNL 300
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K+Y GNL + S L Q +V+++R TGRSRGF FVT T ED + +
Sbjct: 135 KLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 194
Query: 277 MNGVV 281
++G +
Sbjct: 195 LDGTL 199
>gi|449440612|ref|XP_004138078.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 330
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 104/170 (61%), Gaps = 9/170 (5%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E A+L+VGNLPY + S LA +F +AGTV AE++Y+R TDRSRGFGFVTM +VEEA++
Sbjct: 149 NEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 208
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
A+ F+ + GR + VN PRG + Q ++ +IY GNL W + +
Sbjct: 209 AVDTFNRYDLSGRLLTVN-KAAPRGSRQEREPRPFQPTF--------RIYVGNLPWDVDN 259
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++ A+V+++R +GRSRGFGFVT + A+ A++G
Sbjct: 260 GRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDG 309
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + + L ++F+E G V A ++YDR + RSRGFGFVTM +AI
Sbjct: 247 RIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAA 306
Query: 174 FDGSQIGGRTVKVNFPE 190
DG + GR ++VN E
Sbjct: 307 LDGQSLDGRAIRVNVAE 323
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP30; Flags: Precursor
gi|19708|emb|CAA46234.1| RNA binding protein 30 [Nicotiana plumbaginifolia]
Length = 279
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 111/171 (64%), Gaps = 4/171 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VGNL +S S++LAE+F AG V E++YD++T RSRGFGFVTM S EE + A +
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 174 FDGSQIGGRTVKVNFPEVPRGGE----RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
F+G ++ GR ++VN P E R + + G DS +++Y GNL WG+
Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQ 207
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L F Q ++ AKV+++R +GRSRGFGFVT+ +AE++ +A+++++GV
Sbjct: 208 DALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGV 258
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%)
Query: 72 FDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAE 131
DG + +S PE + E + + D + R+YVGNL + + +L
Sbjct: 153 LDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALET 212
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
+F+E G V A++VYDR + RSRGFGFVT S EE AI DG + GR ++V
Sbjct: 213 LFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267
>gi|217073820|gb|ACJ85270.1| unknown [Medicago truncatula]
Length = 285
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 105/175 (60%), Gaps = 12/175 (6%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
VA D +LY GNLPYS+ S+ LA + E G+ E++YDR T +SRGF FVTM VE
Sbjct: 106 VAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVE 165
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ I+ DG + GRT++VNF + P+ E + ++ +K++ GNL W
Sbjct: 166 DCNAVIQNLDGKEFMGRTLRVNFSDKPKPKEPL------------YPETEYKLFVGNLAW 213
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+TS+ L AFQ ++ A+V+F+ TG+SRG+GFV++ T ++ +AL M+ V
Sbjct: 214 TVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNV 268
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++TS SL + F E GTV A +++D T +SRG+GFV+ + E A+ +
Sbjct: 205 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 264
Query: 174 FDGSQIGGRTVKVNFPEVPR 193
D ++ GRT++V+ + R
Sbjct: 265 MDNVELEGRTLRVSLAQGKR 284
>gi|193850551|gb|ACF22879.1| RNA-binding protein [Glycine max]
Length = 302
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 10/167 (5%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+++VGNLP+ S LA +F +AGTV AE++Y+R TDRSRGFGFVTM ++EE ++A++
Sbjct: 124 VKIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVK 183
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+F G ++ GR + VN P+G + Q+ ++Y GNL W + + L
Sbjct: 184 MFSGYELNGRVLTVN-KAAPKGAQPERPPRPPQS---------FRVYVGNLPWDVDNSRL 233
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + A+V+++R TGRSRGFGFVT + D+ A+ A++G
Sbjct: 234 EQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDG 280
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + +S L ++F+E G V A +VYDR T RSRGFGFVTM S + +AI
Sbjct: 218 RVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 277
Query: 174 FDGSQIGGRTVKVN 187
DG + GR ++VN
Sbjct: 278 LDGQSLDGRAIRVN 291
>gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis thaliana]
gi|23505889|gb|AAN28804.1| At4g24770/F22K18_30 [Arabidopsis thaliana]
Length = 329
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNL Y + S +LA +F +AGTV AE++Y+R TD+SRGFGFVTM SV+EA+ A
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ F+ + GR + VN PRG R P++ + ++Y GNL W + +
Sbjct: 208 VEKFNRYDLNGRLLTVN-KAAPRGS-RPERAPRV-------YEPAFRVYVGNLPWDVDNG 258
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++ A+V+++R TGRSRGFGFVT ++L A+ A++G
Sbjct: 259 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG 307
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVTM V+E EAI
Sbjct: 243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302
Query: 172 RLFDGSQIGGRTVKVNFPE--VPRGG 195
DG + GR ++VN E PR G
Sbjct: 303 SALDGQNLEGRAIRVNVAEERPPRHG 328
>gi|363807234|ref|NP_001242356.1| 31 kDa ribonucleoprotein, chloroplastic-like [Glycine max]
gi|255645622|gb|ACU23305.1| unknown [Glycine max]
Length = 300
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 10/167 (5%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+++VGNLP+ S LA +F +AGTV AE++Y+R TDRSRGFGFVTM ++EE ++A++
Sbjct: 122 VKIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVK 181
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+F G ++ GR + VN P+G + Q+ ++Y GNL W + + L
Sbjct: 182 MFSGYELNGRVLTVN-KAAPKGAQPERPPRPPQS---------FRVYVGNLPWDVDNSRL 231
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + A+V+++R TGRSRGFGFVT + D+ A+ A++G
Sbjct: 232 EQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDG 278
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + +S L ++F+E G V A +VYDR T RSRGFGFVTM S + +AI
Sbjct: 216 RVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 275
Query: 174 FDGSQIGGRTVKVN 187
DG + GR ++VN
Sbjct: 276 LDGQSLDGRAIRVN 289
>gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thaliana]
gi|464662|sp|Q04836.1|ROC3_ARATH RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein 1/2/3; Short=AtRBP33; AltName:
Full=RNA-binding protein RNP-T; AltName:
Full=RNA-binding protein cp31; Flags: Precursor
gi|16490|emb|CAA46347.1| RNA-binding protein [Arabidopsis thaliana]
gi|387569|gb|AAA32860.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
gi|475718|gb|AAA18378.1| RNA-binding protein 1 [Arabidopsis thaliana]
gi|4220513|emb|CAA22986.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|7269328|emb|CAB79387.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|332659554|gb|AEE84954.1| ribonucleoprotein [Arabidopsis thaliana]
gi|737169|prf||1921382A RNA-binding protein
Length = 329
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNL Y + S +LA +F +AGTV AE++Y+R TD+SRGFGFVTM SV+EA+ A
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ F+ + GR + VN PRG R P++ + ++Y GNL W + +
Sbjct: 208 VEKFNRYDLNGRLLTVN-KAAPRGS-RPERAPRV-------YEPAFRVYVGNLPWDVDNG 258
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++ A+V+++R TGRSRGFGFVT ++L A+ A++G
Sbjct: 259 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG 307
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVTM V+E EAI
Sbjct: 243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302
Query: 172 RLFDGSQIGGRTVKVNFPE--VPRGG 195
DG + GR ++VN E PR G
Sbjct: 303 SALDGQNLEGRAIRVNVAEERPPRRG 328
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
gi|297313481|gb|EFH43904.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
Length = 305
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 119/207 (57%), Gaps = 15/207 (7%)
Query: 73 DGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEV 132
+G E+++D E++ E + E E E E A+L+VGNL Y + S +LA +
Sbjct: 93 EGSVAVEENEDSFESQDAEGDVSEGAEFPE------PSEEAKLFVGNLAYDVDSQALAML 146
Query: 133 FAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192
F +AGTV AE++Y+R TD+SRGFGFVTM +VEEA+ A+ F+ + GR + VN P
Sbjct: 147 FEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLTVN-KAAP 205
Query: 193 RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY 252
RG R P++ + ++Y GNL W + + L F ++ A+V+++R
Sbjct: 206 RGS-RPERAPRV-------YEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRE 257
Query: 253 TGRSRGFGFVTFETAEDLQSALDAMNG 279
TGRSRGFGFVT +L A+ A++G
Sbjct: 258 TGRSRGFGFVTMSNENELNDAIAALDG 284
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 60/96 (62%), Gaps = 3/96 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + A R+YVGNLP+ + + L +VF+E G V A +VYDR T RSRGFGFVT
Sbjct: 211 ERAPRVY--EPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVT 268
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFP-EVPRGG 195
M + E +AI DG + GR ++VN E PR G
Sbjct: 269 MSNENELNDAIAALDGQNMEGRAIRVNVAEERPRRG 304
>gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thaliana]
Length = 315
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNL Y + S +LA +F +AGTV AE++Y+R TD+SRGFGFVTM SV+EA+ A
Sbjct: 134 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 193
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ F+ + GR + VN PRG R P++ + ++Y GNL W + +
Sbjct: 194 VEKFNRYDLNGRLLTVN-KAAPRGS-RPERAPRV-------YEPAFRVYVGNLPWDVDNG 244
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++ A+V+++R TGRSRGFGFVT ++L A+ A++G
Sbjct: 245 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG 293
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVTM V+E EAI
Sbjct: 229 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 288
Query: 172 RLFDGSQIGGRTVKVNFPE--VPRGG 195
DG + GR ++VN E PR G
Sbjct: 289 SALDGQNLEGRAIRVNVAEERPPRRG 314
>gi|449501439|ref|XP_004161367.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like, partial
[Cucumis sativus]
Length = 324
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 104/170 (61%), Gaps = 9/170 (5%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E A+L+VGNLPY + S LA +F +AGTV AE++Y+R TDRSRGFGFVTM +VEEA++
Sbjct: 143 NEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 202
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
A+ F+ + GR + VN PRG + Q ++ +IY GNL W + +
Sbjct: 203 AVDTFNRYDLSGRLLTVN-KAAPRGSRQEREPRPFQPTF--------RIYVGNLPWDVDN 253
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++ A+V+++R +GRSRGFGFVT + A+ A++G
Sbjct: 254 GRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDG 303
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + + L ++F+E G V A ++YDR + RSRGFGFVTM +AI
Sbjct: 241 RIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAA 300
Query: 174 FDGSQIGGRTVKVNFPE 190
DG + GR ++VN E
Sbjct: 301 LDGQSLDGRAIRVNVAE 317
>gi|388512737|gb|AFK44430.1| unknown [Medicago truncatula]
Length = 291
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 106/171 (61%), Gaps = 10/171 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGN P+ + S LA +F +AGTV AE++Y+R TD SRGFGFVTM +VEEA+ A
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMNTVEEAESA 166
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGG--ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+ F+G GR++ VN P+G ER P+ +++ + +IY NL W +
Sbjct: 167 VEKFNGYDYNGRSLVVN-KASPKGSRPERTERAPR---TFEPVL----RIYVANLAWEVD 218
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L F ++SA+V+++R TGRSRGFGFVT ++ A+ A++G
Sbjct: 219 NSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YV NL + + +S L +VF+E G + SA +VYDR T RSRGFGFVTM E +AI
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 174 FDGSQIGGRTVKVNFPE-VPRGG 195
DG + GRT++V+ E PR G
Sbjct: 267 LDGQSLEGRTIRVSVAEDRPRRG 289
>gi|217073784|gb|ACJ85252.1| unknown [Medicago truncatula]
Length = 280
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 142/264 (53%), Gaps = 30/264 (11%)
Query: 32 LPSLFKTKSPKPLK--LEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQ 89
LPSLF SP+ + NP+ S S+S S S S E +Q
Sbjct: 10 LPSLFTKNSPQCFSSLPSLSLNPNFKPFSFSSVSLRPSLSISHRFISRVAVSS---EFDQ 66
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
EE+ ++ ++ P + + RL+VG+LP+S+ S+ LAE+F AG V E++YD+
Sbjct: 67 EEDTFDDG---DDTPSYSPN---QRLFVGSLPFSVDSAQLAEIFENAGDVEMVEVIYDKS 120
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN-------------FPEVPR-GG 195
T RSRGFGFVTM S E + A + +G + GR ++VN F E PR GG
Sbjct: 121 TGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGG 180
Query: 196 ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 255
+R P+ G D ++++ GNL WG+ + L F Q +L AKVI++R +GR
Sbjct: 181 DRPRGPPR-----GGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGR 235
Query: 256 SRGFGFVTFETAEDLQSALDAMNG 279
SRGFGFVTF +A+++ SA+ ++G
Sbjct: 236 SRGFGFVTFSSADEVDSAIRTLDG 259
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P+ +SD R++VGNL + + + +L +F E G V A+++YDR + RSRGFGFVT S
Sbjct: 187 PRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSS 246
Query: 164 VEEAKEAIRLFDGSQIGGRTVKV 186
+E AIR DG+ + GR ++V
Sbjct: 247 ADEVDSAIRTLDGADLNGRAIRV 269
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+++ G+L + + S L + F+ + +VI+++ TGRSRGFGFVT +A ++++A
Sbjct: 84 QRLFVGSLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQ 143
Query: 276 AMNGVV 281
+NG V
Sbjct: 144 QLNGYV 149
>gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNL Y + S +LA +F +AGTV AE++Y+R TD+SRGFGFVTM SV+EA+ A
Sbjct: 129 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 188
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ F+ + GR + VN PRG R P++ + ++Y GNL W + +
Sbjct: 189 VEKFNRYDLNGRLLTVN-KAAPRGS-RPERAPRV-------YEPAFRVYVGNLPWDVDNG 239
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++ A+V+++R TGRSRGFGFVT ++L A+ A++G
Sbjct: 240 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG 288
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVTM V+E EAI
Sbjct: 224 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 283
Query: 172 RLFDGSQIGGRTVKVNFPE--VPRGG 195
DG + GR ++VN E PR G
Sbjct: 284 SALDGQNLEGRAIRVNVAEERPPRRG 309
>gi|326527719|dbj|BAK08134.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V AE++Y+R + +SRGFGFVTM ++EEA +A
Sbjct: 103 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 162
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
I F+ I GR + VN R +R G +++ + F S + Y GNL W
Sbjct: 163 IETFNRYDISGRLLNVN-----RAAQR---GSRVERPPRQFASS-FRAYVGNLPWQAEDS 213
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F +++A ++++R TGRSRGFGFVT + EDL SA+ A++G
Sbjct: 214 RLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 262
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 50/74 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R YVGNLP+ S L ++F+E G V +A IVYDR T RSRGFGFVTM S E+ AI
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 174 FDGSQIGGRTVKVN 187
DG ++ GR ++VN
Sbjct: 260 LDGQEMDGRPLRVN 273
>gi|326523287|dbj|BAJ88684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 422
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 103/168 (61%), Gaps = 12/168 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LY GNLPY+ S+ LA + + E++YDR T RSRGF FVTM ++E+ + I
Sbjct: 249 ATKLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVI 308
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ DG+ GRT++VN + P+ +A + P+ + HK++ GNL W +T +
Sbjct: 309 KNLDGTLYSGRTMRVNMADRPK--PKAPLYPETE----------HKLFVGNLSWTVTPEM 356
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L DAFQ ++ A+V+++ TGRSRG+GFV + T E++ A++ +NG
Sbjct: 357 LTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNG 404
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++T L + F G V A ++YD T RSRG+GFV + EE +AI
Sbjct: 342 KLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 401
Query: 174 FDGSQIGGRTVKVNF 188
+G++I GR ++VN
Sbjct: 402 LNGTEIEGREIRVNL 416
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K+Y GNL + S L Q +V+++R TGRSRGF FVT T ED + +
Sbjct: 251 KLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 310
Query: 277 MNGVV 281
++G +
Sbjct: 311 LDGTL 315
>gi|326516784|dbj|BAJ96384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V AE++Y+R + +SRGFGFVTM ++EEA +A
Sbjct: 103 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 162
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
I F+ I GR + VN R +R G +++ + F S + Y GNL W
Sbjct: 163 IETFNRYDISGRLLNVN-----RAAQR---GSRVERPPRRFASS-FRAYVGNLPWQAEDS 213
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F +++A ++++R TGRSRGFGFVT + EDL SA+ A++G
Sbjct: 214 RLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 262
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 50/74 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R YVGNLP+ S L ++F+E G V +A IVYDR T RSRGFGFVTM S E+ AI
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 174 FDGSQIGGRTVKVN 187
DG ++ GR ++VN
Sbjct: 260 LDGQEMDGRPLRVN 273
>gi|357148860|ref|XP_003574918.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V AE++Y+R + +SRGFGFVTM ++EEA +A
Sbjct: 106 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 165
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
I +F+ I GR + VN R +R G +++ + F S + Y GNL W
Sbjct: 166 IEMFNRYDISGRLLNVN-----RAAQR---GSRVERPPRQFA-SAFRAYVGNLPWQAEDS 216
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F +L+A V+++R TGRSRGFGFVT + E+L A+ A++G
Sbjct: 217 RLVQLFSEHGEVLNATVVYDRETGRSRGFGFVTMASKEELDDAISALDG 265
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+ AS A R YVGNLP+ S L ++F+E G V +A +VYDR T RSRGFGFVT
Sbjct: 192 ERPPRQFAS--AFRAYVGNLPWQAEDSRLVQLFSEHGEVLNATVVYDRETGRSRGFGFVT 249
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVN 187
M S EE +AI DG ++ GR ++VN
Sbjct: 250 MASKEELDDAISALDGQELDGRPLRVN 276
>gi|414866997|tpg|DAA45554.1| TPA: ribonucleoprotein A [Zea mays]
Length = 262
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 111/178 (62%), Gaps = 31/178 (17%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R++VGNLP+S+ S+ LA +F +AG+V E++YD++T RSRGFGFVTM SVEE + A+
Sbjct: 82 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 141
Query: 174 FDGSQIGGRTVKVN------------FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
F+G + GR+++VN P+ PRG +++Y G
Sbjct: 142 FNGYVLDGRSLRVNSGPPPPRDRSSPSPQRPRG-------------------DANRVYVG 182
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL WG+ + L + F Q +L A++I++R +GRSRGFGFVT+ +AE++++A+ ++G
Sbjct: 183 NLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDG 240
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 55/80 (68%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A R+YVGNL + + +S+LA +F+E G V A I+YDR + RSRGFGFVT GS EE + A
Sbjct: 175 DANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENA 234
Query: 171 IRLFDGSQIGGRTVKVNFPE 190
I DG+ + GR ++V E
Sbjct: 235 ISNLDGADLDGRQIRVTVAE 254
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
+++ GNL + + S L F+ + +VI+++ TGRSRGFGFVT + E+++ A+D
Sbjct: 82 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 141
Query: 277 MNGVV 281
NG V
Sbjct: 142 FNGYV 146
>gi|226492142|ref|NP_001148607.1| ribonucleoprotein A precursor [Zea mays]
gi|195620768|gb|ACG32214.1| ribonucleoprotein A [Zea mays]
Length = 264
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 111/178 (62%), Gaps = 31/178 (17%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R++VGNLP+S+ S+ LA +F +AG+V E++YD++T RSRGFGFVTM SVEE + A+
Sbjct: 84 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 143
Query: 174 FDGSQIGGRTVKVN------------FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
F+G + GR+++VN P+ PRG +++Y G
Sbjct: 144 FNGYVLDGRSLRVNSGPPPPRDRSSPSPQRPRG-------------------DANRVYVG 184
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL WG+ + L + F Q +L A++I++R +GRSRGFGFVT+ +AE++++A+ ++G
Sbjct: 185 NLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDG 242
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 55/80 (68%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A R+YVGNL + + +S+LA +F+E G V A I+YDR + RSRGFGFVT GS EE + A
Sbjct: 177 DANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENA 236
Query: 171 IRLFDGSQIGGRTVKVNFPE 190
I DG+ + GR ++V E
Sbjct: 237 ISNLDGADLDGRQIRVTVAE 256
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
+++ GNL + + S L F+ + +VI+++ TGRSRGFGFVT + E+++ A+D
Sbjct: 84 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 143
Query: 277 MNGVV 281
NG V
Sbjct: 144 FNGYV 148
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 104/169 (61%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNLP+ + S LA++F AG V AE++Y+R TDRSRGFGFVTM +VEEA++A
Sbjct: 109 EDAKLFVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 168
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ L+ ++ GR + VN PRG R P+ Y+ ++Y GNL W +
Sbjct: 169 VELYHKFEVNGRFLTVN-KAAPRGS-RPERAPR---EYE----PSFRVYVGNLPWDVDDA 219
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F +LSA+V+ +R TGRSRGF FVT + ++ A+ A++G
Sbjct: 220 RLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMASESEMNEAIGALDG 268
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + + L +VF+E G V SA +V DR T RSRGF FVTM S E EAI
Sbjct: 206 RVYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMASESEMNEAIGA 265
Query: 174 FDGSQIGGRTVKVNFPE 190
DG + GR ++VN E
Sbjct: 266 LDGQTLEGRAIRVNVAE 282
>gi|297816490|ref|XP_002876128.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
gi|297321966|gb|EFH52387.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
Length = 467
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 111/186 (59%), Gaps = 4/186 (2%)
Query: 97 AVEEEEEPKVA---ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
AV E EE A +S+ A R+Y+GN+P ++T+ L ++ E G V +++YD+ + RS
Sbjct: 57 AVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRS 116
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD 213
R FGF TM SVE+A + +G+ + GR +KVN E P + LQ+ FVD
Sbjct: 117 RRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSSPDLS-LLQSEDSAFVD 175
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
SP+K+Y GNL +T + L + F + ++SAKV T +S GFGFVTF + ED+++A
Sbjct: 176 SPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 235
Query: 274 LDAMNG 279
+ A+N
Sbjct: 236 ILALNN 241
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++T L +F+E G V SA++ T +S GFGFVT S E+ +
Sbjct: 175 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 234
Query: 170 AIRLFDGS 177
AI + S
Sbjct: 235 AILALNNS 242
>gi|2330647|emb|CAA74889.1| ribonucleoprotein [Pisum sativum]
gi|10179830|gb|AAG13900.1| 33 kDa ribonucleoprotein [Pisum sativum]
Length = 291
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 134/264 (50%), Gaps = 21/264 (7%)
Query: 32 LPSLFKTKSPKPLKLEKAQNPSALHLSL-------LSLSYFRQ---FSASFDGFQVTEDS 81
+ +LF K+ KP P H+SL LSL R F+A TE+
Sbjct: 15 IAALFHNKT-KPTSFSLPSKPFKFHISLNSSPSLTLSLKTNRATPLFAAQEGETLTTEEG 73
Query: 82 QDEPE----TEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAG 137
E E E E E E E+ A E A+L+VGNLPY + S LA +F AG
Sbjct: 74 VVETEGLIDWEPEAAENETGGEDYAGGDFAEPSEDAKLFVGNLPYDVDSEKLAMLFEPAG 133
Query: 138 TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGER 197
TV AE++Y+R TD+SRGFGFVTM +VEEA+ F+ GR + VN PRG
Sbjct: 134 TVEIAEVIYNRETDQSRGFGFVTMSTVEEAEAGAAKFNRYDYNGRPLTVN-KAAPRGSRP 192
Query: 198 AAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSR 257
+ +++ + ++Y GNL W L L F ++SA+V+++R TGRSR
Sbjct: 193 EREE-RPPRTFEPVL----RVYVGNLSWELDDSRLEQVFSEHGKVVSARVVYDRETGRSR 247
Query: 258 GFGFVTFETAEDLQSALDAMNGVV 281
GFGFVT +++ A+ A++G +
Sbjct: 248 GFGFVTMSDEKEMNDAIAALDGQI 271
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + S L +VF+E G V SA +VYDR T RSRGFGFVTM +E +AI
Sbjct: 207 RVYVGNLSWELDDSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEKEMNDAIAA 266
Query: 174 FDGSQIGGRTVKVNFPE-VPRGG 195
DG + GRT+KV+ E PR G
Sbjct: 267 LDGQILEGRTIKVSVAEDRPRRG 289
>gi|3550483|emb|CAA11893.1| cp31BHv [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V AE++Y++ + +SRGFGFVTM ++EEA +A
Sbjct: 103 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNKESGQSRGFGFVTMSTIEEADKA 162
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
I F+ I GR + VN R +R G +++ + F S + Y GNL W
Sbjct: 163 IETFNRYNISGRLLNVN-----RAAQR---GSRVERPPRQFASS-FRAYVGNLPWQAEDS 213
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F +++A ++++R TGRSRGFGFVT + EDL SA+ A++G
Sbjct: 214 RLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 262
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 50/74 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R YVGNLP+ S L ++F+E G V +A IVYDR T RSRGFGFVTM S E+ AI
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 174 FDGSQIGGRTVKVN 187
DG ++ GR ++VN
Sbjct: 260 LDGQEMDGRPLRVN 273
>gi|30693595|ref|NP_566958.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314769|ref|NP_001030841.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|17979394|gb|AAL49922.1| unknown protein [Arabidopsis thaliana]
gi|22136722|gb|AAM91680.1| unknown protein [Arabidopsis thaliana]
gi|332645382|gb|AEE78903.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645383|gb|AEE78904.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 253
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 112/189 (59%), Gaps = 11/189 (5%)
Query: 97 AVEEEEEPKVA---ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
AV E EE A +S+ A R+Y+GN+P ++T+ L ++ E G V +++YD+ + RS
Sbjct: 57 AVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRS 116
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK---LQNSYQG 210
R FGF TM SVE+A + +G+ + GR +KVN E P A P LQ+
Sbjct: 117 RRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKP-----IASSPDLSVLQSEDSA 171
Query: 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
FVDSP+K+Y GNL +T + L + F + ++SAKV T +S GFGFVTF + ED+
Sbjct: 172 FVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDV 231
Query: 271 QSALDAMNG 279
++A+ A+N
Sbjct: 232 EAAIVALNN 240
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++T L +F+E G V SA++ T +S GFGFVT S E+ +
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 170 AIRLFDGSQIGGRTVKVN 187
AI + S + G+ ++VN
Sbjct: 234 AIVALNNSLLEGQKIRVN 251
>gi|226533870|gb|ACO71288.1| cp31BHv [Triticum aestivum]
Length = 170
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V AE++Y+R + +SRGFGFVTM ++EEA +A
Sbjct: 1 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 60
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
I F+ I GR + VN R +R G +++ + F S + Y GNL W
Sbjct: 61 IETFNRYDISGRLLNVN-----RAAQR---GSRVERPPRQFA-SSFRAYVGNLPWQAEDS 111
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F +++A V+++R TGRSRGFGFVT + EDL SA+ A++G
Sbjct: 112 RLVQLFSEHGEVVNATVVYDRETGRSRGFGFVTMASKEDLDSAISALDG 160
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+ AS + R YVGNLP+ S L ++F+E G V +A +VYDR T RSRGFGFVT
Sbjct: 87 ERPPRQFAS--SFRAYVGNLPWQAEDSRLVQLFSEHGEVVNATVVYDRETGRSRGFGFVT 144
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKV 186
M S E+ AI DG ++ GR ++V
Sbjct: 145 MASKEDLDSAISALDGQEMDGRPLRV 170
>gi|449432502|ref|XP_004134038.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449487476|ref|XP_004157645.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 276
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 103/167 (61%), Gaps = 12/167 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +LY GNLPYS+ SS LA + + G E++YDR T +SRGF FVTM S+E+ + I
Sbjct: 101 STKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVI 160
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
DGS GR ++VNF + P+ E + ++ +K++ GNL W +TS+
Sbjct: 161 ENLDGSAYMGRILRVNFSDKPKPKEPL------------YPETEYKLFVGNLSWSVTSEI 208
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L AFQ ++ A+VI++ TG+SRG+GFV++ T ++++AL+ +N
Sbjct: 209 LTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETALETIN 255
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +S+TS L + F E G V A ++YD T +SRG+GFV+ + E + A+
Sbjct: 194 KLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETALET 253
Query: 174 FDGSQIGGRTVKVNFPE 190
+ ++ GR ++V+ E
Sbjct: 254 INELELEGRVIRVSLAE 270
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K+Y GNL + + S L Q +V+++R TG+SRGF FVT + ED ++
Sbjct: 103 KLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIEN 162
Query: 277 MNG 279
++G
Sbjct: 163 LDG 165
>gi|242079661|ref|XP_002444599.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
gi|241940949|gb|EES14094.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
Length = 292
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 111/190 (58%), Gaps = 18/190 (9%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E E AVE EE KV YVGNLPY + S LA++F +AG V AE++Y+R
Sbjct: 100 EGEGEYAAVEPPEEAKV---------YVGNLPYDIDSEGLAQLFDQAGVVEVAEVIYNRE 150
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
T +SRGFGFVTM ++EEA +AI +F+ I GR + VN R R G +++ +
Sbjct: 151 TGQSRGFGFVTMSTIEEADKAIEMFNRYDISGRLLNVN-----RASPR---GTRMERPPR 202
Query: 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
F + + Y GNL W + L F +++A V+++R +GRSRGFGFVT + E+
Sbjct: 203 QFAPA-FRAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRESGRSRGFGFVTMVSKEE 261
Query: 270 LQSALDAMNG 279
L A+ A++G
Sbjct: 262 LDDAISALDG 271
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V +A +VYDR + RSRGFGFVTM S EE +AI
Sbjct: 207 AFRAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRESGRSRGFGFVTMVSKEELDDAI 266
Query: 172 RLFDGSQIGGRTVKVN 187
DG ++ GR ++VN
Sbjct: 267 SALDGQELDGRPLRVN 282
>gi|1054915|gb|AAA81023.1| CEBP-1 [Dianthus caryophyllus]
Length = 292
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 142/288 (49%), Gaps = 36/288 (12%)
Query: 10 ASSSLCNKLYNLQAI---TQIPTNHLPSLFKTKSPKPLKLEK-AQNPSALHLSLLSLSYF 65
A+S+ N AI TQ PT+ P PK L LEK N S H L
Sbjct: 2 ATSTATNHFLKTLAISITTQKPTSIFP-------PKSLVLEKPTTNNSQFHYKTHHLCCM 54
Query: 66 RQFSASFDGFQVTEDSQDEPETEQEEEEEEEAV---EEEEEPKVAAS----------DEA 112
S F+ E S + E+E E+ EA E+ EP+ ++ E
Sbjct: 55 CCLQTS--DFE-QESSPNAVIDEEENVEKTEAAVNWEDASEPQPSSGFGSEDGFSEPSED 111
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+LYVGNLP+ + S LA +F AG V AE++Y+R TDRSRGFGFVTM +VEEA +A+
Sbjct: 112 VKLYVGNLPFDVDSEKLANMFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVE 171
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+F ++ GR + VN PRG R P+ F + Y GNL W + + L
Sbjct: 172 MFHSYELNGRLLTVN-KAAPRGS-RPEKAPR------EFCPLLSESYVGNLPWDVDNDRL 223
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA-LDAMNG 279
+LSA+V+ +R T RSRGFGFVT + ++ A L A++G
Sbjct: 224 EQLSSEHGKVLSARVVSDRETERSRGFGFVTMASETEMNDATLGALDG 271
>gi|15218972|ref|NP_176208.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13194798|gb|AAK15561.1|AF348590_1 putative nucleic acid-binding protein [Arabidopsis thaliana]
gi|4249379|gb|AAD14476.1| Strong similarity to gb|X82030 chloroplast RNA binding protein
(RNP1) from Phaseolus vulgaris [Arabidopsis thaliana]
gi|21593720|gb|AAM65687.1| nucleic acid-binding protein, putative [Arabidopsis thaliana]
gi|222423361|dbj|BAH19654.1| AT1G60000 [Arabidopsis thaliana]
gi|332195527|gb|AEE33648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 258
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 115/190 (60%), Gaps = 14/190 (7%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
EEEE+++ +P A + +LY GNLPY++ S++LA++ + E++Y+R
Sbjct: 65 EEEEKDDGASAVLDPPAAVN---TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRD 121
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
T +SRGF FVTM +VE+ I DG++ GR +KVNF + P+ N
Sbjct: 122 TGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPK-----------PNKEP 170
Query: 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
+ ++ HK++ GNL W +TS+ L AF+ ++ A+V+F+ TGRSRG+GFV + + +
Sbjct: 171 LYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAE 230
Query: 270 LQSALDAMNG 279
+++AL++++G
Sbjct: 231 METALESLDG 240
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++TS SLA F E G V A +V+D T RSRG+GFV S E + A+
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 174 FDGSQIGGRTVKVNFPE 190
DG ++ GR ++VN +
Sbjct: 238 LDGFELEGRAIRVNLAQ 254
>gi|357112177|ref|XP_003557886.1| PREDICTED: ribonucleoprotein At2g37220, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 113/177 (63%), Gaps = 7/177 (3%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E R++VGNLP+S+ S+ LA +F +AG+V E++YD++T RSRGFGFVTM +VEE +EA
Sbjct: 75 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 134
Query: 171 IRLFDGSQIGGRTVKVNF-------PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+ +G + GRT+KVN PRG + G Q S +G +++Y GNL
Sbjct: 135 VEQLNGYVLDGRTIKVNSGPPPPRDQSSPRGFREQSSGGFRQQSSRGPSGGDNRVYVGNL 194
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
W + L + F Q +L A+VI++R +GRSRGFGFVT+ ++E+++ A+ ++G
Sbjct: 195 SWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGSSEEVEKAVSNLDGT 251
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL +++ S+LA +F E G+V A ++YDR + RSRGFGFVT GS EE ++A+
Sbjct: 188 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGSSEEVEKAVSN 247
Query: 174 FDGSQIGGRTVKVNFPE 190
DG+ + GR ++V E
Sbjct: 248 LDGTDLDGRQIRVTVAE 264
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
+++ GNL + + S L F+ + +VI+++ TGRSRGFGFVT T E+++ A++
Sbjct: 78 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVEQ 137
Query: 277 MNGVV 281
+NG V
Sbjct: 138 LNGYV 142
>gi|326503656|dbj|BAJ86334.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 268
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 120/190 (63%), Gaps = 7/190 (3%)
Query: 97 AVEEEEEPKVAAS-DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRG 155
AV + E +VA E R++VGNLP+S+ S+ LA +F +AG+V E++YD++T RSRG
Sbjct: 57 AVSSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRG 116
Query: 156 FGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF-PEVPRG-----GERAAMGPKLQNSYQ 209
FGFVTM +VEE +EA+ +G + GR +KVN P P+ G R G Q S +
Sbjct: 117 FGFVTMSTVEEVEEAVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSR 176
Query: 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
G +++Y GNL W + L + F Q +L A+VI++R +GRSRGFGFVT+ T+++
Sbjct: 177 GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDE 236
Query: 270 LQSALDAMNG 279
+Q A+ ++G
Sbjct: 237 VQKAVSNLDG 246
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 54/77 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL +++ S+LA +F E G+V A ++YDR + RSRGFGFVT G+ +E ++A+
Sbjct: 184 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 243
Query: 174 FDGSQIGGRTVKVNFPE 190
DG+ + GR ++V E
Sbjct: 244 LDGTDMDGRQIRVTVAE 260
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
+++ GNL + + S L F+ + +VI+++ TGRSRGFGFVT T E+++ A++
Sbjct: 75 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 134
Query: 277 MNGVV 281
+NG V
Sbjct: 135 LNGYV 139
>gi|388508864|gb|AFK42498.1| unknown [Medicago truncatula]
Length = 300
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 134/274 (48%), Gaps = 41/274 (14%)
Query: 33 PSLFKTKSPKPL-----KLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPET 87
PSLF TKS P K K QNPS S + VT +Q
Sbjct: 20 PSLFYTKSKSPFISNSAKPFKVQNPSYNSSKFSSSVSLVSKRRTRHSSLVTFVAQTSDWA 79
Query: 88 EQEEEEEEEAVEEE----------------------EEPKVAASDEAARLYVGNLPYSMT 125
+QEE+E+ E + EEP E +++VGNLP+ +
Sbjct: 80 QQEEKEDGATWENQADATWVGETESNENEEVEVASFEEPS-----EDLKIFVGNLPFDVD 134
Query: 126 SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185
S LA++F ++GTV AE++Y+R TDRSRGFGFVTM + EE + A+ F G ++ GR +
Sbjct: 135 SEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKFSGFELDGRLLT 194
Query: 186 VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSA 245
VN PRG R P+ NS G + Y GNL W + + L F + SA
Sbjct: 195 VN-NAAPRGTPRLRQ-PRTFNS--GL-----RAYVGNLPWDVDNSSLEQLFSEHGKVESA 245
Query: 246 KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+V+++R TGR RGFGFVT ++ A+ A++G
Sbjct: 246 QVVYDRETGRLRGFGFVTMSNEAEMNDAIAALDG 279
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 52/77 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R YVGNLP+ + +SSL ++F+E G V SA++VYDR T R RGFGFVTM + E +AI
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRLRGFGFVTMSNEAEMNDAIAA 276
Query: 174 FDGSQIGGRTVKVNFPE 190
DG GR ++VN E
Sbjct: 277 LDGQSFNGRAIRVNVAE 293
>gi|297837519|ref|XP_002886641.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
gi|297332482|gb|EFH62900.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
Length = 252
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 119/195 (61%), Gaps = 17/195 (8%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEI 144
PET + EEEE ++ +P A + +LY GNLPY++ S++LA++ + E+
Sbjct: 57 PETINVKLEEEE---KDLDPPAAIN---TKLYFGNLPYNVDSATLAQIIQDFANPELVEV 110
Query: 145 VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKL 204
+Y+R T +SRGF FVTM +VE+ I DG++ GR +KVNF + P+
Sbjct: 111 LYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPK----------- 159
Query: 205 QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
N + ++ HK++ GNL W +TS+ L +AF+ ++ A+V+++ TGRSRG+GFV +
Sbjct: 160 PNKEPLYPETEHKLFVGNLSWTVTSESLAEAFRECGDVVGARVVYDGDTGRSRGYGFVCY 219
Query: 265 ETAEDLQSALDAMNG 279
+ ++++AL++++G
Sbjct: 220 SSKAEMETALESLDG 234
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 49/75 (65%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++TS SLAE F E G V A +VYD T RSRG+GFV S E + A+
Sbjct: 172 KLFVGNLSWTVTSESLAEAFRECGDVVGARVVYDGDTGRSRGYGFVCYSSKAEMETALES 231
Query: 174 FDGSQIGGRTVKVNF 188
DG ++ GR ++VN
Sbjct: 232 LDGFELEGRAIRVNL 246
>gi|222423445|dbj|BAH19693.1| AT3G52150 [Arabidopsis thaliana]
Length = 253
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 112/189 (59%), Gaps = 11/189 (5%)
Query: 97 AVEEEEEPKVA---ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
AV E EE A +S+ A R+Y+GN+P ++++ L ++ E G V +++YD+ + RS
Sbjct: 57 AVTETEEKPAALDPSSEAARRVYIGNIPRTVSNEQLTKLVEEHGAVEKVQVMYDKYSGRS 116
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK---LQNSYQG 210
R FGF TM SVE+A + +G+ + GR +KVN E P A P LQ+
Sbjct: 117 RRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKP-----IASSPDLSVLQSEDSA 171
Query: 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
FVDSP+K+Y GNL +T + L + F + ++SAKV T +S GFGFVTF + ED+
Sbjct: 172 FVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDV 231
Query: 271 QSALDAMNG 279
++A+ A+N
Sbjct: 232 EAAVVALNN 240
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++T L +F+E G V SA++ T +S GFGFVT S E+ +
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 170 AIRLFDGSQIGGRTVKVN 187
A+ + S + G+ ++VN
Sbjct: 234 AVVALNNSLLEGQKIRVN 251
>gi|75275079|sp|P82277.1|RRP2_SPIOL RecName: Full=30S ribosomal protein 2, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 2;
Short=PSRP-2; Flags: Precursor
gi|7578881|gb|AAF64167.1|AF240462_1 plastid-specific ribosomal protein 2 precursor [Spinacia oleracea]
Length = 260
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A RLYVGN+P ++ + L + E G + AE++YD+ + RSR FGFVTM +VE+A I
Sbjct: 83 ARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVI 142
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ ++IGGR +KVN E P G A Q FV+SP+K+Y GNL +T++
Sbjct: 143 EKLNDTEIGGRKIKVNITEKPLEGMDIAT---TQAEDSQFVESPYKVYIGNLAKTVTNEL 199
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L+D F + +L AKV T +S GFGFV+F + E++++A+ A+N V
Sbjct: 200 LKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSV 249
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++Y+GNL ++T+ L + F+E G V A++ T +S GFGFV+ S EE + AI+
Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244
Query: 174 FDGSQIGGRTVKVN 187
+ S + G+ ++VN
Sbjct: 245 LNNSVLEGQKIRVN 258
>gi|255566169|ref|XP_002524072.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223536640|gb|EEF38282.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 190
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 112/175 (64%), Gaps = 16/175 (9%)
Query: 14 LCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQN---PSALHLSLLSLSYFRQFSA 70
L KL NL + H LFK PL+L K N P+ L SLLS +F +
Sbjct: 19 LQTKLSNLSLTPSPLSLHTQYLFK-----PLRLLKLNNTHFPNPL--SLLSTHHFIPKFS 71
Query: 71 SFDGFQVTED----SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTS 126
+FD F+V +D ++D+ ++E EE +E E+E P V ++DE RLYVGNLPYSMTS
Sbjct: 72 AFDSFEVDQDDKISARDDLQSEPEELGQEIEEEKEFVP-VESNDEG-RLYVGNLPYSMTS 129
Query: 127 SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181
S L EV EAG+VA+ EI+YDRVTDRSRGFGFVTM SVEEAKEAI++F+ S I
Sbjct: 130 SELTEVMQEAGSVANVEIIYDRVTDRSRGFGFVTMASVEEAKEAIKMFNESMIAS 184
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
++Y GNL + +TS L + Q + + ++I++R T RSRGFGFVT + E+ + A+
Sbjct: 117 RLYVGNLPYSMTSSELTEVMQEAGSVANVEIIYDRVTDRSRGFGFVTMASVEEAKEAIKM 176
Query: 277 MN 278
N
Sbjct: 177 FN 178
>gi|224107511|ref|XP_002314506.1| predicted protein [Populus trichocarpa]
gi|222863546|gb|EEF00677.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 101/167 (60%), Gaps = 12/167 (7%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY GNLPY++ S+ LA + E G+ E++Y R T RSRGF FVTM S+E+ I
Sbjct: 108 KLYFGNLPYNVDSAQLAGIIQEYGSPEMVEVLYHRETGRSRGFAFVTMSSIEDCNAVIEN 167
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
D SQ GR ++VNF + P+ E + ++ +K++ GNL W TS+ L
Sbjct: 168 LDESQYMGRILRVNFSDNPKPKEPL------------YPETEYKLFVGNLSWSATSESLT 215
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
AFQ ++ A+V+++ TG+SRG+GFV + T ++Q+AL +++GV
Sbjct: 216 QAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKAEMQTALVSLDGV 262
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +S TS SL + F E G V A ++YD T +SRG+GFV + E + A+
Sbjct: 199 KLFVGNLSWSATSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKAEMQTALVS 258
Query: 174 FDGSQIGGRTVKVNFPE 190
DG ++ GR ++V+ E
Sbjct: 259 LDGVELEGRALRVSLAE 275
>gi|212274649|ref|NP_001130287.1| uncharacterized protein LOC100191381 [Zea mays]
gi|194688754|gb|ACF78461.1| unknown [Zea mays]
gi|414870130|tpg|DAA48687.1| TPA: ribonucleoprotein [Zea mays]
Length = 289
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V AE++Y++ T +SRGFGFVTM ++EEA +A
Sbjct: 109 EEAKVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGFGFVTMSTIEEADKA 168
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
I +F+ I GR + VN R R G +++ + F + + Y GNL W
Sbjct: 169 IEMFNRYDISGRLLNVN-----RASPR---GTRMERPPRQFAPA-FRAYVGNLPWQADDS 219
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F +++A V+++R TGRSRGFGFVT + E+L A+ A++G
Sbjct: 220 RLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAISALDG 268
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 52/76 (68%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ S L ++F+E G V +A +VYDR T RSRGFGFVTM S EE +AI
Sbjct: 204 AFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAI 263
Query: 172 RLFDGSQIGGRTVKVN 187
DG ++ GR ++VN
Sbjct: 264 SALDGQELDGRPLRVN 279
>gi|195624584|gb|ACG34122.1| ribonucleoprotein [Zea mays]
Length = 289
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 111/190 (58%), Gaps = 18/190 (9%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E E AVE EE A++YVGNLPY + S LA++F +AG V AE++Y++
Sbjct: 97 EGEGEYAAVEPPEE---------AKVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKE 147
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
T +SRGFGFVTM ++EEA +AI +F+ I GR + VN R R G +++ +
Sbjct: 148 TGQSRGFGFVTMSTIEEADKAIEMFNRYDISGRLLNVN-----RASPR---GTRMERPPR 199
Query: 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
F + + Y GNL W L F +++A V+++R TGRSRGFGFVT + E+
Sbjct: 200 QFAPA-FRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEE 258
Query: 270 LQSALDAMNG 279
L A+ A++G
Sbjct: 259 LDDAISALDG 268
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 52/76 (68%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ S L ++F+E G V +A +VYDR T RSRGFGFVTM S EE +AI
Sbjct: 204 AFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAI 263
Query: 172 RLFDGSQIGGRTVKVN 187
DG ++ GR ++VN
Sbjct: 264 SALDGQELDGRPLRVN 279
>gi|356534904|ref|XP_003535991.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 102/169 (60%), Gaps = 12/169 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LY GNLPYS+ S+ LA + + G+ E++YDR + +SRGF FVTM +E+ I
Sbjct: 109 ATKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDSGKSRGFAFVTMSCIEDCNAVI 168
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
DG + GRT++VNF P+ E + ++ HK++ GNL W +T++
Sbjct: 169 ENLDGKEFLGRTLRVNFSSKPKPKEPL------------YPETEHKLFVGNLSWSVTNEI 216
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L AFQ ++ A+V+++ TGRSRG+GFV + T ++++A+ A+N V
Sbjct: 217 LTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDV 265
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +S+T+ L + F E GTV A ++YD T RSRG+GFV + E + A+
Sbjct: 202 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAA 261
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERA 198
+ ++ GR ++V+ + G+RA
Sbjct: 262 LNDVELEGRAMRVSLAQ----GKRA 282
>gi|168054234|ref|XP_001779537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669018|gb|EDQ55613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 194
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 15/179 (8%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLP++ S+ LAE+ + +V + ++VYD+ + RSRGF FVTM + E A+ I
Sbjct: 1 KLYVGNLPWTCDSAQLAEICGDISSVEAVDVVYDQQSGRSRGFAFVTMSTNEGAQSVIDR 60
Query: 174 FDGSQIGGRTVKVNFPEVPR-------------GGERAAMGPKLQNSYQGFVDSPHKIYA 220
DGS GGR +KV+FP+ PR G+R + P Q S + +D+ +K++
Sbjct: 61 LDGSDFGGRPLKVSFPQ-PRENRDNKPRFGNNERGDRRSDRPPRQGSDR-VLDNTNKMFI 118
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL W + L F ++ AKV+++R TG+SRGFGFVT A ++ +A+ ++G
Sbjct: 119 GNLSWSCDADALVQVFSEYGSVVDAKVVYDRDTGKSRGFGFVTMSAASEVSNAVQNLDG 177
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 53/77 (68%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++++GNL +S + +L +VF+E G+V A++VYDR T +SRGFGFVTM + E
Sbjct: 111 DNTNKMFIGNLSWSCDADALVQVFSEYGSVVDAKVVYDRDTGKSRGFGFVTMSAASEVSN 170
Query: 170 AIRLFDGSQIGGRTVKV 186
A++ DG++ GR ++V
Sbjct: 171 AVQNLDGAEFEGREMRV 187
>gi|388500434|gb|AFK38283.1| unknown [Lotus japonicus]
Length = 273
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 99/167 (59%), Gaps = 12/167 (7%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY GNLPYS+ S+ LA + E G+ E++YDR + +SRGF FVTM VE+ I
Sbjct: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
DG + GRT++VN + P+ E + ++ HK++ GNL W +TS+ L
Sbjct: 162 LDGKEFLGRTLRVNLSDKPKPKEPL------------YPETEHKLFVGNLSWTVTSESLI 209
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
FQ ++ A+V+++ TGRSRG+GFV + +L++AL ++N V
Sbjct: 210 QVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNV 256
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++TS SL +VF E GTV A ++YD T RSRG+GFV E + A+
Sbjct: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
Query: 174 FDGSQIGGRTVKVNFPEVPR 193
+ ++ GR ++V+ E R
Sbjct: 253 LNNVELEGRAIRVSLAEGKR 272
>gi|115478330|ref|NP_001062760.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|49387841|dbj|BAD26506.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|49388840|dbj|BAD26030.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|113630993|dbj|BAF24674.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|215695254|dbj|BAG90445.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737768|dbj|BAG96898.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641205|gb|EEE69337.1| hypothetical protein OsJ_28655 [Oryza sativa Japonica Group]
Length = 245
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 8/170 (4%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGN+P ++T+ LA +FA+ GTV AE+++D+ T RSR FGFVTM + EEA AI
Sbjct: 69 ARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAI 128
Query: 172 RLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
+ +++GGR +KVN E +P +R+A P+ FVDS +K+Y GNL +T+
Sbjct: 129 ESLNETEVGGRKIKVNVTESFLP-NIDRSAPEPE-----PVFVDSQYKVYVGNLAKSVTT 182
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L++ F + +LSA V T +S+G+GFVTF + E++Q+A+ N
Sbjct: 183 EMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNN 232
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
EP+ D ++YVGNL S+T+ L F+E G V SA + T +S+G+GFVT
Sbjct: 159 EPEPVFVDSQYKVYVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFS 218
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKVN 187
S EE + A+ F+ +++ G+ ++VN
Sbjct: 219 SEEEVQAAVSTFNNAELEGQPIRVN 243
>gi|388493590|gb|AFK34861.1| unknown [Medicago truncatula]
Length = 285
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 102/175 (58%), Gaps = 12/175 (6%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
VA D +LY GNLPYS+ S+ LA + E G+ E++YDR T +SRGF FVTM VE
Sbjct: 106 VAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVE 165
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ I+ DG + GRT++VNF + P+ E + ++ +K++ GNL W
Sbjct: 166 DCNAVIQNLDGKEFMGRTLRVNFSDKPKPKEPL------------YPETEYKLFVGNLAW 213
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T + AFQ ++ A+V+F+ TG+ RG+GFV++ T ++ +AL M+ V
Sbjct: 214 TVTFESFTQAFQEHGTVVGARVLFDGETGKFRGYGFVSYATKSEMDTALAIMDNV 268
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++T S + F E GTV A +++D T + RG+GFV+ + E A+ +
Sbjct: 205 KLFVGNLAWTVTFESFTQAFQEHGTVVGARVLFDGETGKFRGYGFVSYATKSEMDTALAI 264
Query: 174 FDGSQIGGRTVKVNFPEVPR 193
D ++ GRT++V+ + R
Sbjct: 265 MDNVELEGRTLRVSLAQGKR 284
>gi|116787606|gb|ABK24573.1| unknown [Picea sitchensis]
Length = 290
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +L+VGNLP+++ + L E+F AG V I+ DR T SRGFGFVTMG+VEEA++
Sbjct: 111 EGTKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKG 170
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ LF+ + GR + VN + A G K++ Q S +KIY GNL W
Sbjct: 171 VELFNRHSLEGRLLTVN--------KAAPRGTKVERPSQAG-SSTNKIYVGNLPWQADDN 221
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F +L A+V+++R TGRSRGFGFVT+ + ++ A+ A++G
Sbjct: 222 SLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDG 270
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P A S ++YVGNLP+ +SL ++F+E G V A +VYDR T RSRGFGFVT
Sbjct: 197 ERPSQAGS-STNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTY 255
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGG 195
S E +AI DG+ + GR ++VN E R G
Sbjct: 256 SSESEVNDAIAALDGTDMDGRPLRVNIAEDRRRG 289
>gi|99029149|gb|ABF60862.1| GRSF [Lilium longiflorum]
Length = 207
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 101/169 (59%), Gaps = 15/169 (8%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A+L+VGN+PY S LA +F +AG V AE++Y+R TD+SRGFGFVTM +VEEA+ A+
Sbjct: 30 AKLFVGNIPYD-DSEKLANLFDKAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAERAVE 88
Query: 173 LFDGSQIGGRTVKVNFPEVPRGG--ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ I GR + VN PRG ER P+ D ++Y GNL W +
Sbjct: 89 MLHRYDINGRNLTVN-KAAPRGSRPER----PRES-------DPSLRVYVGNLPWQVDDS 136
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++ A+V+++R +GRSRGFGFVT T E++ A+ A++G
Sbjct: 137 RLEQLFSEHGKVIDARVVYDRQSGRSRGFGFVTLATREEVDDAIAALDG 185
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P+ SD + R+YVGNLP+ + S L ++F+E G V A +VYDR + RSRGFGFVT+
Sbjct: 113 ERPR--ESDPSLRVYVGNLPWQVDDSRLEQLFSEHGKVIDARVVYDRQSGRSRGFGFVTL 170
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
+ EE +AI DG + GR ++VN E
Sbjct: 171 ATREEVDDAIAALDGQSLEGRALRVNVAE 199
>gi|357157795|ref|XP_003577917.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 8/168 (4%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGN+P ++T+ L +FA+ GTV A+++YD+ + RSR FGFVTM SVEEA AI
Sbjct: 70 KLYVGNIPRTVTNDELRAMFADHGTVLRADVMYDKYSGRSRRFGFVTMSSVEEANAAIES 129
Query: 174 FDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ +++GGR +KVN E +P + P FVDS +K+Y GNL +T++
Sbjct: 130 LNETEVGGRKIKVNVTESFLPN------IDPSAPEPEPAFVDSQYKVYVGNLAKTVTTEV 183
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++ F + +LSA V T +S+G+GFVTF + E++++A+ N
Sbjct: 184 LKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVSTFNN 231
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
EP+ A D ++YVGNL ++T+ L F+E G V SA + T +S+G+GFVT
Sbjct: 158 EPEPAFVDSQYKVYVGNLAKTVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFS 217
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKVN 187
S EE + A+ F+ +++ G+ ++VN
Sbjct: 218 SEEEVEAAVSTFNNTELEGQPIRVN 242
>gi|116788830|gb|ABK25016.1| unknown [Picea sitchensis]
Length = 290
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +L+VGNLP+++ + L E+F AG V I+ DR T SRGFGFVTMG+VEEA++
Sbjct: 111 EWTKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKG 170
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ LF+ + GR + VN + A G K++ Q S +KIY GNL W
Sbjct: 171 VELFNRHSLEGRLLTVN--------KAAPRGTKVERPSQAG-SSTNKIYVGNLPWQADDN 221
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F +L A+V+++R TGRSRGFGFVT+ + ++ A+ A++G
Sbjct: 222 SLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDG 270
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P A S ++YVGNLP+ +SL ++F+E G V A +VYDR T RSRGFGFVT
Sbjct: 197 ERPSQAGS-STNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTY 255
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGG 195
S E +AI DG+ + GR ++VN E R G
Sbjct: 256 SSESEVNDAIAALDGTDMDGRPLRVNIAEDRRRG 289
>gi|388518645|gb|AFK47384.1| unknown [Lotus japonicus]
Length = 307
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 146/273 (53%), Gaps = 37/273 (13%)
Query: 33 PSLFKTKSPKP-----LKLEKAQNPSA------------LHLSLLSLSYFRQFSASFDGF 75
PSLF +K+ P LK K Q P + H S L L++ Q S D
Sbjct: 23 PSLFSSKTRYPILSNSLKTLKLQLPCSNSSPFSPSLLSTTHRSPL-LTFVAQTS---DWA 78
Query: 76 QVTED------SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAA---RLYVGNLPYSMTS 126
Q E+ ++ EP E+ +E E EE V AS E + +++VGNLP+ + S
Sbjct: 79 QQEEEGGAAWENEGEPTWANEDSDETEGGEE-----VVASAEPSEDLKIFVGNLPWDVES 133
Query: 127 SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
+LA +F EAG+V AE++Y++ T++SRGFGFV M + E+ ++A+ F G ++ GR + V
Sbjct: 134 ENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTV 193
Query: 187 NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAK 246
N P+ R P+ S G DS +Y GNL W + + L + F+ + +A+
Sbjct: 194 N-KATPKEA-RPERPPRTFGSGSGSRDSGLSVYVGNLPWSVDAARLEEIFREHGNVENAR 251
Query: 247 VIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ +R TGRSRGFGFVT + D+ A+ A++G
Sbjct: 252 IVMDRETGRSRGFGFVTMSSEADINGAIAALDG 284
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP+S+ ++ L E+F E G V +A IV DR T RSRGFGFVTM S + AI
Sbjct: 223 VYVGNLPWSVDAARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
Query: 175 DGSQIGGRTVKVNFPEVPRGG 195
DG + GRT++V+ E GG
Sbjct: 283 DGQSLDGRTIRVSVAEGRSGG 303
>gi|449515273|ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 288
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 107/185 (57%), Gaps = 12/185 (6%)
Query: 95 EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSR 154
EEA EE ++ ++ +LY+ NLP+S++ + E+F + GTV+ EI+ + RSR
Sbjct: 81 EEASEENQD-----VNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQK-NGRSR 134
Query: 155 GFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDS 214
GF FVTM S +EA+ AI+ FD +I GR +KV F +R P + ++
Sbjct: 135 GFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEF------AKRLKKPPPPKPPGPPPGET 188
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+K+Y NL W + S LRD F ++A+V+F+ GRS G+GFV+F T E+ Q+AL
Sbjct: 189 VNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTAL 248
Query: 275 DAMNG 279
++ G
Sbjct: 249 SSLEG 253
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NL + + S++L + F+E +A +V+D RS G+GFV+ + EEA+ A+
Sbjct: 191 KLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSS 250
Query: 174 FDGSQIGGRTVKVNFPE 190
+G ++ GR +++ F E
Sbjct: 251 LEGKELMGRPLRLKFSE 267
>gi|388522459|gb|AFK49291.1| unknown [Lotus japonicus]
Length = 162
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 106/170 (62%), Gaps = 18/170 (10%)
Query: 1 MAASTVSMAASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPS----ALH 56
MA++T + SSS+CN++YNL + +L S +P+ +KA N + +
Sbjct: 1 MASTT---SVSSSICNRIYNLSF-----KHSSLALTCNFSQRPIS-QKAFNLNLKFQSFI 51
Query: 57 LSLLSLSYFRQFSASFDGFQVTEDS----QDEPETEQEEEEEEEAVEEEEEPKVAASDEA 112
LS LSL AS D F+V +DS QD PE E E E ++ +EEE+ KV+ S +
Sbjct: 52 LSPLSLHRLHPPPASTDEFEVAQDSTDSRQDNPEPEPETETSDKPQQEEEQ-KVSTSSDD 110
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
RLYVGNLPYSMTSS L E+F EAGTV S E++YDRVTDRSRGF FVTMG
Sbjct: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMG 160
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
++Y GNL + +TS L + F ++S +V+++R T RSRGF FVT
Sbjct: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTM 159
>gi|449462067|ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
sativus]
Length = 282
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 107/185 (57%), Gaps = 12/185 (6%)
Query: 95 EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSR 154
EEA EE ++ ++ +LY+ NLP+S++ + E+F + GTV+ EI+ + RSR
Sbjct: 75 EEASEENQD-----VNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQK-NGRSR 128
Query: 155 GFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDS 214
GF FVTM S +EA+ AI+ FD +I GR +KV F +R P + ++
Sbjct: 129 GFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEF------AKRLKKPPPPKPPGPPPGET 182
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+K+Y NL W + S LRD F ++A+V+F+ GRS G+GFV+F T E+ Q+AL
Sbjct: 183 VNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTAL 242
Query: 275 DAMNG 279
++ G
Sbjct: 243 SSLEG 247
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NL + + S++L + F+E +A +V+D RS G+GFV+ + EEA+ A+
Sbjct: 185 KLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSS 244
Query: 174 FDGSQIGGRTVKVNFPE 190
+G ++ GR +++ F E
Sbjct: 245 LEGKELMGRPLRLKFSE 261
>gi|297608990|ref|NP_001062481.2| Os08g0557100 [Oryza sativa Japonica Group]
gi|255678651|dbj|BAF24395.2| Os08g0557100, partial [Oryza sativa Japonica Group]
Length = 194
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 104/168 (61%), Gaps = 11/168 (6%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A++YVGNLPY + S LA++F +AG V AE++Y+R T +SRGFGFVTM ++EEA +AI
Sbjct: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR + VN RAA G +++ + F + + Y GNL W +
Sbjct: 76 MLNRYDINGRLLNVN---------RAAPRGSRVERPPRQFAPA-FRAYVGNLPWQVDDSR 125
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F +++A V+++R +GRSRGFGFV+ + E+L A+ A++G
Sbjct: 126 LLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDG 173
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 53/76 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V +A +VYDR + RSRGFGFV+M S EE +AI
Sbjct: 109 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAI 168
Query: 172 RLFDGSQIGGRTVKVN 187
DG ++ GR ++VN
Sbjct: 169 SALDGQELDGRPLRVN 184
>gi|42407939|dbj|BAD09078.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|125604308|gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group]
gi|215697914|dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 305
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 11/167 (6%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNLPY + S LA++F +AG V AE++Y+R T +SRGFGFVTM ++EEA +AI +
Sbjct: 128 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 187
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR + VN RAA G +++ + F + + Y GNL W + L
Sbjct: 188 LNRYDINGRLLNVN---------RAAPRGSRVERPPRQFAPA-FRAYVGNLPWQVDDSRL 237
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +++A V+++R +GRSRGFGFV+ + E+L A+ A++G
Sbjct: 238 LQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDG 284
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 53/76 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V +A +VYDR + RSRGFGFV+M S EE +AI
Sbjct: 220 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAI 279
Query: 172 RLFDGSQIGGRTVKVN 187
DG ++ GR ++VN
Sbjct: 280 SALDGQELDGRPLRVN 295
>gi|125562527|gb|EAZ07975.1| hypothetical protein OsI_30233 [Oryza sativa Indica Group]
Length = 306
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 11/167 (6%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNLPY + S LA++F +AG V AE++Y+R T +SRGFGFVTM ++EEA +AI +
Sbjct: 129 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 188
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR + VN RAA G +++ + F + + Y GNL W + L
Sbjct: 189 LNRYDINGRLLNVN---------RAAPRGSRVERPPRQFAPA-FRAYVGNLPWQVDDSRL 238
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +++A V+++R +GRSRGFGFV+ + E+L A+ A++G
Sbjct: 239 LQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDG 285
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 53/76 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V +A +VYDR + RSRGFGFV+M S EE +AI
Sbjct: 221 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAI 280
Query: 172 RLFDGSQIGGRTVKVN 187
DG ++ GR ++VN
Sbjct: 281 SALDGQELDGRPLRVN 296
>gi|226532108|ref|NP_001142375.1| uncharacterized protein LOC100274547 [Zea mays]
gi|194708524|gb|ACF88346.1| unknown [Zea mays]
Length = 163
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 92/141 (65%), Gaps = 3/141 (2%)
Query: 143 EIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF-PEVPRGGE--RAA 199
E+VYDR+T RSRGFGFVTM S EEA A+ F+G GR ++VN P PR G RA
Sbjct: 3 EVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQFNGYTFQGRPLRVNCGPPPPRDGSAPRAP 62
Query: 200 MGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF 259
G FVDS +K+Y GNL WG+ + L + F Q +L AKVI++R +GRSRGF
Sbjct: 63 RGGGGGGGGGSFVDSGNKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGF 122
Query: 260 GFVTFETAEDLQSALDAMNGV 280
GFVT+ +AE++ +A+ ++G+
Sbjct: 123 GFVTYGSAEEVNNAISNLDGI 143
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL + + +S+L +F+E G V A+++YDR + RSRGFGFVT GS EE
Sbjct: 76 DSGNKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNN 135
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
AI DG + GR ++V E
Sbjct: 136 AISNLDGIDLDGRQIRVTVAE 156
>gi|297823333|ref|XP_002879549.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
gi|297325388|gb|EFH55808.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
Length = 308
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 110/193 (56%), Gaps = 5/193 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
E+E EEE +EE+ + S+ +L+V NLP+SM+ + ++E+F + GTV + EI+
Sbjct: 70 EKETSAEEETSQEEKTEETQKSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS 207
+ ++RGF FVTM S EEA+ AI FD SQ+ GR + VNF R ++ P
Sbjct: 130 K-DGKNRGFAFVTMASGEEAQAAIDKFDTSQVSGRIISVNF---ARRFKKPTPKPPNDLP 185
Query: 208 YQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFET 266
D+ HK+Y NL W S LR+ F +SA+V+F GRS G+GFV+F T
Sbjct: 186 SPPPGDTRHKLYVSNLAWKARSTHLRELFTASDFNPVSARVVFADPEGRSSGYGFVSFAT 245
Query: 267 AEDLQSALDAMNG 279
E+ + A+ ++G
Sbjct: 246 REEAEDAIAKLDG 258
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D +LYV NL + S+ L E+F + SA +V+ RS G+GFV+ + EEA+
Sbjct: 191 DTRHKLYVSNLAWKARSTHLRELFTASDFNPVSARVVFADPEGRSSGYGFVSFATREEAE 250
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
+AI DG +I GR + + F
Sbjct: 251 DAIAKLDGKEIMGRPIILKF 270
>gi|388499174|gb|AFK37653.1| unknown [Lotus japonicus]
Length = 302
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 124/218 (56%), Gaps = 30/218 (13%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E ++EE+ ++ E + A D +++VGNLP+S+ S+ LAE+F +AG V E++YD+
Sbjct: 66 EFDQEEDTFSDDAETRSFAPDH--KVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKT 123
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERA-AMGPKLQNS- 207
T SRGF FVTM S EA+ A + F+ ++ GR ++VN P+ R P+ +N+
Sbjct: 124 TGNSRGFAFVTMSSAAEAEVAAQQFNNYELEGRALRVNSGPPPKNENRGFNENPRFRNNS 183
Query: 208 -YQGFVDS-------------------------PHKIYAGNLGWGLTSQGLRDAFQGQPG 241
+G DS ++++ GNL WG+ + L F+ Q
Sbjct: 184 FNRGGSDSYRGGSDGYRGGGSDGYRGGGSSSYSENRVHVGNLAWGVDNAALESLFREQGR 243
Query: 242 LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ AKVI++R +GRSRGFGFVTF + +++ SA+ +++G
Sbjct: 244 VVDAKVIYDRESGRSRGFGFVTFSSPDEVNSAIRSLDG 281
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R++VGNL + + +++L +F E G V A+++YDR + RSRGFGFVT S +E AIR
Sbjct: 219 RVHVGNLAWGVDNAALESLFREQGRVVDAKVIYDRESGRSRGFGFVTFSSPDEVNSAIRS 278
Query: 174 FDGSQIGGRTVKV 186
DG+ + GR +KV
Sbjct: 279 LDGADLNGRAIKV 291
>gi|326523691|dbj|BAJ93016.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 244
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 106/168 (63%), Gaps = 8/168 (4%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGN+P ++T+ L+ +FA GTV AE++YD+ + RSR FGFVTM + EE AI
Sbjct: 70 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 129
Query: 174 FDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ +++GGR +KVN E +P A P+ + S FVDS +K+Y GNL +T++
Sbjct: 130 LNDTEVGGRKIKVNVTESFLPNID---ASAPESEPS---FVDSQYKVYVGNLAKKVTTEV 183
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++ F + +LSA V T +S+G+GFVTF + E++++A+ N
Sbjct: 184 LKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVSTFNN 231
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E EP D ++YVGNL +T+ L F+E G V SA + T +S+G+GFVT
Sbjct: 158 ESEPSFV--DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVT 215
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVN 187
S EE + A+ F+ +++ G+T++VN
Sbjct: 216 FSSEEEVEAAVSTFNNTELEGQTIRVN 242
>gi|449436259|ref|XP_004135910.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
gi|449489082|ref|XP_004158209.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
Length = 251
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A+S +LY+GN+P ++ + L + E G V AE++YD+ + RSR F FVTM +VE+
Sbjct: 68 ASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVED 127
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A AI + +++GGR +KVN E P LQ F+DSP+K+Y GN+
Sbjct: 128 ANAAIEKLNETEVGGRKIKVNITEKPVVN--TVDMSFLQAEESQFIDSPYKVYVGNISST 185
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++++ L++ F + +LSAKV T +S G+GFVTF + E++ +A+ + N
Sbjct: 186 VSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNN 238
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGN+ ++++ +L F+E G V SA++ T +S G+GFVT S EE
Sbjct: 172 DSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDA 231
Query: 170 AIRLFDGSQIGGRTVKVN 187
AI F+ + + G+ ++VN
Sbjct: 232 AISSFNNALLEGQPIRVN 249
>gi|15226983|ref|NP_181084.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|3608147|gb|AAC36180.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|14596023|gb|AAK68739.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|23198314|gb|AAN15684.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|330254012|gb|AEC09106.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 308
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 111/201 (55%), Gaps = 21/201 (10%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
E+E +EE +EE+ + S+ +L+V NLP+SM+ + ++E+F + GTV + EI+
Sbjct: 70 EKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF--------PEVPRGGERAA 199
+ ++RGF FVTM S EEA+ AI FD Q+ GR + V+F P+ P A
Sbjct: 130 K-DGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPA 188
Query: 200 MGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRG 258
G D+ HK+Y NL W S LR+ F +SA+V+F GRS G
Sbjct: 189 PG-----------DTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSG 237
Query: 259 FGFVTFETAEDLQSALDAMNG 279
+GFV+F T E+ ++A+ +NG
Sbjct: 238 YGFVSFATREEAENAITKLNG 258
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMG 162
P A D +LYV NL + S+ L E+F A SA +V+ RS G+GFV+
Sbjct: 185 PSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFA 244
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKVNF 188
+ EEA+ AI +G +I GR + + F
Sbjct: 245 TREEAENAITKLNGKEIMGRPITLKF 270
>gi|359806610|ref|NP_001241528.1| uncharacterized protein LOC100820203 [Glycine max]
gi|255645445|gb|ACU23218.1| unknown [Glycine max]
gi|255645775|gb|ACU23380.1| unknown [Glycine max]
Length = 289
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 92/155 (59%), Gaps = 12/155 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LY GNLPYS+ S+ LA + + G+ E++YDR T +SRGF FVTM +E+ I
Sbjct: 116 ATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVI 175
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
DG + GRT++VNF P+ E + ++ HK++ GNL W +T++
Sbjct: 176 ENLDGKEFLGRTLRVNFSSKPKPKEPL------------YPETEHKLFVGNLSWSVTNEI 223
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266
L AFQ ++ A+V+++ TGRSRG+GFV + T
Sbjct: 224 LTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYST 258
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +S+T+ L + F E GTV A ++YD T RSRG+GFV + E + A+
Sbjct: 209 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAA 268
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERA 198
+ ++ GR ++V+ + G+RA
Sbjct: 269 LNDVELEGRAMRVSLAQ----GKRA 289
>gi|226533248|ref|NP_001149356.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195626620|gb|ACG35140.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414884785|tpg|DAA60799.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 251
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 115/182 (63%), Gaps = 11/182 (6%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P+ A A +LYVGN+P ++T+ L ++FA GTV AE++YD+ T+RSR FGFVTM
Sbjct: 61 EAPEAVA---ARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTM 117
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+ EEA A+ +G+++G R +KVN E +P +R+A P+ FVDS +K+Y
Sbjct: 118 STAEEANAAVEALNGTEVGDRKIKVNVTESFLP-NIDRSAPEPEAL-----FVDSQYKVY 171
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL +T++ L++ F + +LSA V T +S+G+GFVTF + E++++A+ N
Sbjct: 172 VGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNN 231
Query: 280 VV 281
V
Sbjct: 232 AV 233
>gi|255548039|ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223545556|gb|EEF47060.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 281
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 95/165 (57%), Gaps = 1/165 (0%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NLP S + L E+F GTV S E+ + T SRG GFVTMGS+ AK AI
Sbjct: 100 LYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETGISRGCGFVTMGSINSAKNAIAAL 159
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
DGS IGGR ++V F G R + F +SP K+Y GNL W + + LRD
Sbjct: 160 DGSDIGGREMRVKFSVDMNSGRRNPEPLSSAPTKNLFYESPFKVYVGNLAWTVKPEELRD 219
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F ++SA+V+++R G++R +GF++F + ++ +AL + NG
Sbjct: 220 QFSKFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERDAAL-SFNG 263
>gi|224035665|gb|ACN36908.1| unknown [Zea mays]
Length = 251
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 115/182 (63%), Gaps = 11/182 (6%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P+ A A +LYVGN+P ++T+ L ++FA GTV AE++YD+ T+RSR FGFVTM
Sbjct: 61 EAPEAVA---ARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTM 117
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+ EEA A+ +G+++G R +KVN E +P +R+A P+ FVDS +K+Y
Sbjct: 118 STAEEANAAVEALNGTEVGDRKIKVNVTESFLP-NIDRSAPEPEAL-----FVDSQYKVY 171
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL +T++ L++ F + +LSA V T +S+G+GFVTF + E++++A+ N
Sbjct: 172 VGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNN 231
Query: 280 VV 281
V
Sbjct: 232 AV 233
>gi|414884784|tpg|DAA60798.1| TPA: hypothetical protein ZEAMMB73_633133 [Zea mays]
Length = 244
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 114/180 (63%), Gaps = 11/180 (6%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P+ A A +LYVGN+P ++T+ L ++FA GTV AE++YD+ T+RSR FGFVTM
Sbjct: 61 EAPEAVA---ARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTM 117
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+ EEA A+ +G+++G R +KVN E +P +R+A P+ FVDS +K+Y
Sbjct: 118 STAEEANAAVEALNGTEVGDRKIKVNVTESFLP-NIDRSAPEPEAL-----FVDSQYKVY 171
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL +T++ L++ F + +LSA V T +S+G+GFVTF + E++++A+ N
Sbjct: 172 VGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNN 231
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
EP+ D ++YVGNL ++T+ L F+E G + SA + + T +S+G+GFVT
Sbjct: 158 EPEALFVDSQYKVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFS 217
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKVN 187
S EE + A+ F+ +++ G+ ++VN
Sbjct: 218 SEEEVEAAVATFNNAELEGQLIRVN 242
>gi|302754352|ref|XP_002960600.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
gi|302771648|ref|XP_002969242.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300162718|gb|EFJ29330.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300171539|gb|EFJ38139.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
Length = 197
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGN+ +++ S LA+ F G E++YDR+ +SRGF FVT+ + + AK AI
Sbjct: 19 KLYVGNIAWNVDSKMLADCFNGVGITELEEVMYDRMLGKSRGFAFVTLSTEDAAKTAIEK 78
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
DG ++ GR ++VN+P+VPRGG G + S +P K + N+ W + QGL+
Sbjct: 79 LDGHELEGRPLRVNYPQVPRGGGGFGGGFGTRPSIPA---NPAKCFVANIPWSVDDQGLQ 135
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F ++ +++ + +GRSRG GFVTF T ++ +A+ A++G
Sbjct: 136 EFFSSHGTVVDCRILTDAESGRSRGIGFVTFATPDEANNAISALDG 181
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A+ +V N+P+S+ L E F+ GTV I+ D + RSRG GFVT + +EA AI
Sbjct: 118 AKCFVANIPWSVDDQGLQEFFSSHGTVVDCRILTDAESGRSRGIGFVTFATPDEANNAIS 177
Query: 173 LFDGSQIGGRTVKV 186
DG+++GGR+++V
Sbjct: 178 ALDGAELGGRSIRV 191
>gi|4678944|emb|CAB41335.1| putative protein [Arabidopsis thaliana]
Length = 546
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 112/196 (57%), Gaps = 20/196 (10%)
Query: 97 AVEEEEEPKVA---ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
AV E EE A +S+ A R+Y+GN+P ++T+ L ++ E G V +++YD+ + RS
Sbjct: 57 AVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVE--KVMYDKYSGRS 114
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQ-------IGGRTVKVNFPEVPRGGERAAMGPKL-- 204
R FGF TM SVE+A + +G+ + GR +KVN E P A P L
Sbjct: 115 RRFGFATMKSVEDANAVVEKLNGNSLFLVSQTVEGREIKVNITEKP-----IASSPDLSV 169
Query: 205 -QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263
Q+ FVDSP+K+Y GNL +T + L + F + ++SAKV T +S GFGFVT
Sbjct: 170 LQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVT 229
Query: 264 FETAEDLQSALDAMNG 279
F + ED+++A+ A+N
Sbjct: 230 FSSEEDVEAAIVALNN 245
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++T L +F+E G V SA++ T +S GFGFVT S E+ +
Sbjct: 179 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 238
Query: 170 AIRLFDGSQIGGRTVK 185
AI + S + G+ ++
Sbjct: 239 AIVALNNSLLEGQKIR 254
>gi|255573485|ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532973|gb|EEF34739.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 278
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 95/166 (57%), Gaps = 7/166 (4%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NLP+S++ + +F + GTV EI+ + RSRGF FVT+ S EEA+ AI
Sbjct: 84 KLYVFNLPWSLSVVDIKNLFGQCGTVTDVEIIKQK-NGRSRGFAFVTLASGEEAQAAIDK 142
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
D ++ GR ++V F +R + ++ HKIY NL W + S LR
Sbjct: 143 LDSHEVSGRIIRVEF------AKRLKPPSPPSPTGTSARETRHKIYVSNLAWKVRSTHLR 196
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F +S++V+F+ TGRS G+GFV+F T E+ ++A+ A++G
Sbjct: 197 EFFSTNFSPVSSRVVFDSPTGRSSGYGFVSFATREEAEAAISALDG 242
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
+A + ++YV NL + + S+ L E F+ + S+ +V+D T RS G+GFV+ + EE
Sbjct: 173 SARETRHKIYVSNLAWKVRSTHLREFFSTNFSPVSSRVVFDSPTGRSSGYGFVSFATREE 232
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE 190
A+ AI DG ++ GR +++ F +
Sbjct: 233 AEAAISALDGKELMGRPLRLKFSD 256
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 122/239 (51%), Gaps = 58/239 (24%)
Query: 99 EEEEEPKVAASDEAA-----------RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
E EE+ A D++A +L+VGNL +++ S+ LA++F AG V E++YD
Sbjct: 74 EVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYD 133
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF-PEVPRGGERAAMGPK--- 203
+VT RSRGFGFVTM + E + A + F+G + GR ++VN P P+ E + GP+
Sbjct: 134 KVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGG 193
Query: 204 --------------------------LQNSYQGF-----------------VDSPHKIYA 220
Q S G+ S +++Y
Sbjct: 194 YGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYV 253
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL WG+ L + F Q ++ A+VI++R +GRS+GFGFVT +++++Q A++++NG
Sbjct: 254 GNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNG 312
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNL + + +L +F E G V A ++YDR + RS+GFGFVT+ S +E ++AI
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 174 FDGSQIGGRTVKVNFPEV--PRG 194
+G+ + GR ++V+ E PRG
Sbjct: 310 LNGADLDGRQIRVSEAEARPPRG 332
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 122/239 (51%), Gaps = 58/239 (24%)
Query: 99 EEEEEPKVAASDEAA-----------RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
E EE+ A D++A +L+VGNL +++ S+ LA++F AG V E++YD
Sbjct: 66 EVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYD 125
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF-PEVPRGGERAAMGPK--- 203
+VT RSRGFGFVTM + E + A + F+G + GR ++VN P P+ E + GP+
Sbjct: 126 KVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGG 185
Query: 204 --------------------------LQNSYQGF-----------------VDSPHKIYA 220
Q S G+ S +++Y
Sbjct: 186 YGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYV 245
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL WG+ L + F Q ++ A+VI++R +GRS+GFGFVT +++++Q A++++NG
Sbjct: 246 GNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNG 304
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNL + + +L +F E G V A ++YDR + RS+GFGFVT+ S +E ++AI
Sbjct: 242 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 301
Query: 174 FDGSQIGGRTVKVNFPEV--PRG 194
+G+ + GR ++V+ E PRG
Sbjct: 302 LNGADLDGRQIRVSEAEARPPRG 324
>gi|302822192|ref|XP_002992755.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
gi|300139400|gb|EFJ06141.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
Length = 177
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 103/171 (60%), Gaps = 15/171 (8%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAE-IVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+R+YVGNL ++ S LA+V +AG +A E +V DR T RSRGFG+VT+ S++ A+ A+
Sbjct: 1 SRIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAV 60
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD---SPHKIYAGNLGWGLT 228
+ DG + GR +K +F + P + +G V+ S K++ GNL WG+
Sbjct: 61 QKLDGHIVQGRALKASFSQ-----------PYKKAGKEGPVEVAASHTKVFIGNLPWGVD 109
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + F+ ++ AK++++R TGRSRGFGFVT + ++ A+ +++G
Sbjct: 110 DGSLEEFFRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDG 160
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+VAAS ++++GNLP+ + SL E F G V A+IVYDR T RSRGFGFVT+ S
Sbjct: 91 EVAASH--TKVFIGNLPWGVDDGSLEEFFRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSP 148
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPE 190
+EA EA++ DG+ GR ++V +
Sbjct: 149 KEADEAVKSLDGADCDGRRLRVKLAD 174
>gi|224128049|ref|XP_002320231.1| predicted protein [Populus trichocarpa]
gi|222861004|gb|EEE98546.1| predicted protein [Populus trichocarpa]
Length = 287
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 9/237 (3%)
Query: 43 PLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEE 102
P++L+ + +L LS R+F A +E +EE ++ E +++
Sbjct: 39 PIQLQHPKLCCSLSLSNTLCLRSRKFLAVLAVVDKETVITEEINHVREEIDDFELKKKQA 98
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
+P LYV NLP S + L E+F G+V S E+ + T SRG G++TMG
Sbjct: 99 KP--------CELYVCNLPRSSDIADLVEMFKPFGSVLSVEVSRNPETGVSRGCGYITMG 150
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGN 222
SVE A+ A+ DGS +GGR ++V + G R + F +SPHK+Y GN
Sbjct: 151 SVESARNAVSALDGSDVGGREMRVRYSVEISSGRRNPEALNSAPTKHLFYESPHKLYVGN 210
Query: 223 LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L W LR+ F ++SA+V+ +R G++R + F++F + + +AL +MNG
Sbjct: 211 LPWSTKPDELRNLFNHFGIVVSARVLSDRKGGKNRTYAFLSFLSDAERDAAL-SMNG 266
>gi|356531425|ref|XP_003534278.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 31/250 (12%)
Query: 33 PSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEEE 92
P F K+P +KL + S H+ S S+F+ F Q+ Q+ TEQ E
Sbjct: 13 PQRFSAKAPISIKL----HASTSHI-FSSKSFFKTGRLCF---QLCSTLQEVAPTEQTLE 64
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR 152
+ +D +LYV NL +S+T++ + ++FA+ GTV EI+ + R
Sbjct: 65 ------------PIQPTDNVKKLYVVNLSWSLTAADITDLFAQCGTVTDVEIIKSK-DGR 111
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFV 212
S+G+ FVTM S EEA+ A+ FD ++ GR ++V E+ + ++ P G
Sbjct: 112 SKGYAFVTMASGEEAQAAVDKFDSYELSGRIIRV---ELAKRLKKPPSLPPPPGPRPG-- 166
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQ---GQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
++ H IYA NL W S LR F P SA+V+F+ +GRS G+GFV+F T ED
Sbjct: 167 ETRHVIYASNLAWKARSTHLRQVFTENFKTPS--SARVVFDSPSGRSAGYGFVSFLTRED 224
Query: 270 LQSALDAMNG 279
++A+ ++G
Sbjct: 225 AEAAISTVDG 234
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+Y NL + S+ L +VF E T +SA +V+D + RS G+GFV+ + E+A+ AI
Sbjct: 172 IYASNLAWKARSTHLRQVFTENFKTPSSARVVFDSPSGRSAGYGFVSFLTREDAEAAIST 231
Query: 174 FDGSQIGGRTVKVNFPE 190
DG ++ GR +++ F E
Sbjct: 232 VDGKELMGRPLRLKFSE 248
>gi|88911212|gb|ABD58896.1| chloroplast single strand DNA binding protein [Mesostigma viride]
Length = 299
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 108/196 (55%), Gaps = 15/196 (7%)
Query: 97 AVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF 156
A+ E + + ++ + +LYVGNL +S L + F++ G V +AE+V DR + RSRGF
Sbjct: 74 AMAETFQDQATSTAASTKLYVGNLAWSCDDEMLNQAFSQFGEVKAAEVVLDRESGRSRGF 133
Query: 157 GFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-------- 208
FVTM S + A++A R DG+++ GR ++VNFP+ P+ GERA + + S
Sbjct: 134 AFVTMASPDAAEKARRGLDGTELAGRAIRVNFPQ-PK-GERAPRAERGERSERSERSERT 191
Query: 209 -----QGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263
G +++Y GNL W + L D F + A+V+ +R +GRSRGF FV
Sbjct: 192 YTPRGDGEAGDANRLYVGNLPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVA 251
Query: 264 FETAEDLQSALDAMNG 279
T E+ A+ ++G
Sbjct: 252 LSTPEEANEAMANLDG 267
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 54/78 (69%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A RLYVGNLP+SM L ++F E GTV A +V DR + RSRGF FV + + EEA EA
Sbjct: 202 DANRLYVGNLPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVALSTPEEANEA 261
Query: 171 IRLFDGSQIGGRTVKVNF 188
+ DG +IGGRT++VN
Sbjct: 262 MANLDGEEIGGRTIRVNL 279
>gi|326512018|dbj|BAJ95990.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 830
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 99/173 (57%), Gaps = 10/173 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A +YV NLPY + + L F AG V ++++YDR RSRGFG+VTM +V+EA++A
Sbjct: 567 EGATVYVRNLPYHLDNEGLKLNFQHAGVVLFSKVIYDREIGRSRGFGYVTMNTVQEAEKA 626
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+R++ GS++ GR + V+ PRGG S G SP +I+ NL + +
Sbjct: 627 VRIYHGSEVHGRRLTVSI-AAPRGGTWVGA----TRSQSG---SPLRIFVCNLPSQVDNS 678
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGR--SRGFGFVTFETAEDLQSALDAMNGVV 281
L + F ++ A+VI+ER G SRGFGFVT T E+ A+ A+N V
Sbjct: 679 RLEELFNKHGQVVDARVIYERREGASCSRGFGFVTMATDEESYKAIRALNKQV 731
>gi|302758260|ref|XP_002962553.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
gi|300169414|gb|EFJ36016.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
Length = 177
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 102/171 (59%), Gaps = 15/171 (8%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAE-IVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+R+YVGNL ++ S LA+V +AG +A E +V DR T RSRGFG+VT+ S++ A+ A+
Sbjct: 1 SRIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAV 60
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD---SPHKIYAGNLGWGLT 228
+ DG + GR +K ++ + P + +G V+ S K++ GNL WG+
Sbjct: 61 QKLDGHIVQGRALKASYSQ-----------PYKKAGKEGPVEVAASHTKVFIGNLPWGVD 109
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + F+ ++ K++++R TGRSRGFGFVT + ++ A+ +++G
Sbjct: 110 DGSLEEFFRAHGKVVEVKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDG 160
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+VAAS ++++GNLP+ + SL E F G V +IVYDR T RSRGFGFVT+ S
Sbjct: 91 EVAASH--TKVFIGNLPWGVDDGSLEEFFRAHGKVVEVKIVYDRDTGRSRGFGFVTLSSP 148
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPE 190
+EA EA++ DG+ GR ++V +
Sbjct: 149 KEADEAVKSLDGADCDGRRLRVKLAD 174
>gi|225427185|ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
vinifera]
Length = 288
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 107/190 (56%), Gaps = 9/190 (4%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
+E E E E+ +EP ++ +L+V NLP+S++ + +F E GTV EI+ +
Sbjct: 71 QEIEVEAKPEQTQEP-----NQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQK- 124
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
RSRG+ FVTM S EEA+ + FD ++ GR ++V F + ++ + P +
Sbjct: 125 DGRSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFA---KRFKKPSPPPPPPPAGP 181
Query: 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
++ HK+Y NL W + S LR+ F +S +V+F+ +GRS G+GF +F T E+
Sbjct: 182 PAGETRHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEE 241
Query: 270 LQSALDAMNG 279
++A+ A++G
Sbjct: 242 AEAAISALDG 251
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NL + + S+ L E F+ S +V+D + RS G+GF + + EEA+ AI
Sbjct: 189 KLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISA 248
Query: 174 FDGSQIGGRTVKVNF 188
DG ++ GR V + F
Sbjct: 249 LDGKELMGRPVHLKF 263
>gi|15223293|ref|NP_171616.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|16930401|gb|AAL31886.1|AF419554_1 At1g01080/T25K16_7 [Arabidopsis thaliana]
gi|21554268|gb|AAM63343.1| ribonucleoprotein, putative [Arabidopsis thaliana]
gi|22135777|gb|AAM91045.1| At1g01080/T25K16_7 [Arabidopsis thaliana]
gi|332189110|gb|AEE27231.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 293
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 105/191 (54%), Gaps = 8/191 (4%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
E +++V + EP LYV N+P S + L ++F GTV S E+ + T
Sbjct: 89 EPNKDSVVSKAEP--VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTG 146
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF 211
SRG G+VTMGS+ AK AI DG+++GGR ++V + G R P++ NS
Sbjct: 147 ESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRR--NPEVLNSTPKK 204
Query: 212 V---DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
+ +S HK+Y GNL W GLR+ F ++S +V+ +R TGR+R F F++F + E
Sbjct: 205 ILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGE 264
Query: 269 DLQSALDAMNG 279
+ +AL + NG
Sbjct: 265 ERDAAL-SFNG 274
>gi|475720|gb|AAA18380.1| RNA-binding protein 3 [Arabidopsis thaliana]
Length = 162
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 9/148 (6%)
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191
+F +AGTV AE++Y+R TD+SRGFGFVTM SV+EA+ A+ F+ + GR + VN
Sbjct: 2 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-KAA 60
Query: 192 PRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER 251
PRG R P++ + ++Y GNL W + + L F ++ A+V+++R
Sbjct: 61 PRGS-RPERAPRV-------YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDR 112
Query: 252 YTGRSRGFGFVTFETAEDLQSALDAMNG 279
TGRSRGFGFVT ++L A+ A++G
Sbjct: 113 ETGRSRGFGFVTMSDVDELNEAISALDG 140
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVT
Sbjct: 67 ERAPRV--YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 124
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGG 195
M V+E EAI DG + GR ++VN E PR G
Sbjct: 125 MSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRG 161
>gi|297742089|emb|CBI33876.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 107/190 (56%), Gaps = 9/190 (4%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
+E E E E+ +EP ++ +L+V NLP+S++ + +F E GTV EI+ +
Sbjct: 41 QEIEVEAKPEQTQEP-----NQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQK- 94
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
RSRG+ FVTM S EEA+ + FD ++ GR ++V F + ++ + P +
Sbjct: 95 DGRSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFA---KRFKKPSPPPPPPPAGP 151
Query: 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
++ HK+Y NL W + S LR+ F +S +V+F+ +GRS G+GF +F T E+
Sbjct: 152 PAGETRHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEE 211
Query: 270 LQSALDAMNG 279
++A+ A++G
Sbjct: 212 AEAAISALDG 221
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NL + + S+ L E F+ S +V+D + RS G+GF + + EEA+ AI
Sbjct: 159 KLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISA 218
Query: 174 FDGSQIGGRTVKVNF 188
DG ++ GR V + F
Sbjct: 219 LDGKELMGRPVHLKF 233
>gi|297843010|ref|XP_002889386.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335228|gb|EFH65645.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 298
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 8/193 (4%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E ++V E EP LYV N+P S + L ++F GTV S E+ +
Sbjct: 92 EGETNGDSVVSEAEP--VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQ 149
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
T SRG G+VTMGS+ AK AI DG+++GGR ++V + G R P++ NS
Sbjct: 150 TGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGAR--RNPEVLNSTP 207
Query: 210 GFV---DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266
+ +S +K+Y GNL W GLRD F ++S +V+ +R TG++R F F++F
Sbjct: 208 KKILMYESQYKVYVGNLPWFTQPDGLRDHFSKFGTIVSTRVLHDRKTGKNRVFAFLSFTN 267
Query: 267 AEDLQSALDAMNG 279
+E+ +AL ++NG
Sbjct: 268 SEERDAAL-SLNG 279
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
K+ + ++YVGNLP+ L + F++ GT+ S +++DR T ++R F F++ +
Sbjct: 209 KILMYESQYKVYVGNLPWFTQPDGLRDHFSKFGTIVSTRVLHDRKTGKNRVFAFLSFTNS 268
Query: 165 EEAKEAIRLFDGSQIGGRTVKV 186
EE A+ L +G+Q GR + V
Sbjct: 269 EERDAALSL-NGTQYEGRRIIV 289
>gi|118489861|gb|ABK96729.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 294
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 106/191 (55%), Gaps = 9/191 (4%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
+E E EEEE + ++ +L+V NLP+S + + ++F + GTV+ EI+ +
Sbjct: 74 QEVTMEITPEEEE--IQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQK-N 130
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQG 210
RSRGF FVTM + EEA+ AI F+ ++ GR ++V F + R P+L +
Sbjct: 131 GRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEFAK----RLRRPPSPRLPGTPAD 186
Query: 211 FV--DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
++ HK+Y NL W + LR+ F +S++V+F+ GRS G+GFV+F T E
Sbjct: 187 IPAGETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATRE 246
Query: 269 DLQSALDAMNG 279
+ +A+ A +G
Sbjct: 247 EAVAAISAFSG 257
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+ A + +LY+ NL + + S L E F+ S+ +V+D RS G+GFV+ + E
Sbjct: 187 IPAGETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATRE 246
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPE 190
EA AI F G ++ GR +++ F E
Sbjct: 247 EAVAAISAFSGKELMGRPIRLKFSE 271
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ NL W + ++D F GQ G +S I ++ GRSRGF FVT T E+ Q+A+D
Sbjct: 95 KLFVVNLPWSFSVVDIKDLF-GQCGTVSDVEIIKQKNGRSRGFAFVTMTTGEEAQAAIDK 153
Query: 277 MNGV 280
N +
Sbjct: 154 FNSL 157
>gi|224138144|ref|XP_002326529.1| predicted protein [Populus trichocarpa]
gi|222833851|gb|EEE72328.1| predicted protein [Populus trichocarpa]
Length = 294
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 106/191 (55%), Gaps = 9/191 (4%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
+E E EEEE + ++ +L+V NLP+S + + ++F + GTV+ EI+ +
Sbjct: 74 QEVTVEITPEEEE--IQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQK-N 130
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQG 210
RSRGF FVTM + EEA+ AI F+ ++ GR ++V F + R P+L +
Sbjct: 131 GRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEFAK----RLRRPPSPRLPGTPAD 186
Query: 211 FV--DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
++ HK+Y NL W + LR+ F +S++V+F+ GRS G+GFV+F T E
Sbjct: 187 IPAGETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATRE 246
Query: 269 DLQSALDAMNG 279
+ +A+ A +G
Sbjct: 247 EAVAAISAFSG 257
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+ A + +LY+ NL + + S L E F+ S+ +V+D RS G+GFV+ + E
Sbjct: 187 IPAGETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATRE 246
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPE 190
EA AI F G ++ GR +++ F E
Sbjct: 247 EAVAAISAFSGKELMGRPIRLKFSE 271
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ NL W + ++D F GQ G +S I ++ GRSRGF FVT T E+ Q+A+D
Sbjct: 95 KLFVVNLPWSFSVVDIKDLF-GQCGTVSDVEIIKQKNGRSRGFAFVTMTTGEEAQAAIDK 153
Query: 277 MNGV 280
N +
Sbjct: 154 FNSL 157
>gi|79316226|ref|NP_001030925.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332189111|gb|AEE27232.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 294
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 9/192 (4%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV-YDRVT 150
E +++V + EP LYV N+P S + L ++F GTV S E+V + T
Sbjct: 89 EPNKDSVVSKAEP--VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQT 146
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQG 210
SRG G+VTMGS+ AK AI DG+++GGR ++V + G R P++ NS
Sbjct: 147 GESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRR--NPEVLNSTPK 204
Query: 211 FV---DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267
+ +S HK+Y GNL W GLR+ F ++S +V+ +R TGR+R F F++F +
Sbjct: 205 KILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSG 264
Query: 268 EDLQSALDAMNG 279
E+ +AL + NG
Sbjct: 265 EERDAAL-SFNG 275
>gi|449445537|ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 286
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 123/250 (49%), Gaps = 18/250 (7%)
Query: 35 LFKTKSPKPLKLEKAQN-PSALHLSLLSLSYFR-----QFSASFDGFQVTEDSQDEPETE 88
+ K KSP ++ + S+ H L R +F F E + E
Sbjct: 22 ILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSLRHNHGERFPVLFTVLD-NESALTEEAIV 80
Query: 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR 148
+ + + E ++ +E K+A E LYV NLP S + L E+F GTV +AE+ +
Sbjct: 81 EGDVKSEGSLSNQEVKKLARPCE---LYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNP 137
Query: 149 VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP----EVPRGGERAAMGPKL 204
T S+G G+VTMGS+ AK +I DGS +GGR ++V F R PK
Sbjct: 138 ETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKK 197
Query: 205 QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
Y+ SP+K+Y GNL W + LR+ F ++SAKV+ +R G+SR +GF++F
Sbjct: 198 NIIYE----SPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSF 253
Query: 265 ETAEDLQSAL 274
+A + +++
Sbjct: 254 SSAAERDASI 263
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNL + + L +F+ GTV SA+++ DR +SR +GF++ S E +I L
Sbjct: 206 KVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISL 265
Query: 174 FDGSQIGGRTVKV 186
DG++ R + V
Sbjct: 266 -DGTEYNNRKLVV 277
>gi|449518978|ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 284
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 123/250 (49%), Gaps = 18/250 (7%)
Query: 35 LFKTKSPKPLKLEKAQN-PSALHLSLLSLSYFR-----QFSASFDGFQVTEDSQDEPETE 88
+ K KSP ++ + S+ H L R +F F E + E
Sbjct: 20 ILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSLRHNHGERFPVLFTVLD-NESALTEEAIV 78
Query: 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR 148
+ + + E ++ +E K+A E LYV NLP S + L E+F GTV +AE+ +
Sbjct: 79 EGDVKSEGSLSNQEVKKLARPCE---LYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNP 135
Query: 149 VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP----EVPRGGERAAMGPKL 204
T S+G G+VTMGS+ AK +I DGS +GGR ++V F R PK
Sbjct: 136 ETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKK 195
Query: 205 QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
Y+ SP+K+Y GNL W + LR+ F ++SAKV+ +R G+SR +GF++F
Sbjct: 196 NIIYE----SPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSF 251
Query: 265 ETAEDLQSAL 274
+A + +++
Sbjct: 252 SSAAERDASI 261
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNL + + L +F+ GTV SA+++ DR +SR +GF++ S E +I L
Sbjct: 204 KVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISL 263
Query: 174 FDGSQIGGRTVKV 186
DG++ R + V
Sbjct: 264 -DGTEYNNRKLVV 275
>gi|147859670|emb|CAN83111.1| hypothetical protein VITISV_026573 [Vitis vinifera]
Length = 355
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 12/148 (8%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S +LY GNLPYS S+ LA + G+ E++YDR T RSRGF FVTM SVE+
Sbjct: 60 AESPVNTKLYFGNLPYSCDSAHLAGIIQNYGSPELVEVLYDRDTGRSRGFAFVTMSSVED 119
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
I DGS+ GGRT++VNF + P+ PKL + ++ +K++ GNL W
Sbjct: 120 CNAVIENLDGSEYGGRTLRVNFSDKPK--------PKLPL----YPETEYKLFVGNLSWS 167
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTG 254
+TS+ L FQ ++ A+V+++ TG
Sbjct: 168 VTSESLNQVFQEYGNVIGARVLYDGETG 195
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQ--GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
K+Y GNL + S L Q G P L+ +V+++R TGRSRGF FVT + ED + +
Sbjct: 67 KLYFGNLPYSCDSAHLAGIIQNYGSPELV--EVLYDRDTGRSRGFAFVTMSSVEDCNAVI 124
Query: 275 DAMNG 279
+ ++G
Sbjct: 125 ENLDG 129
>gi|303286031|ref|XP_003062305.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455822|gb|EEH53124.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 227
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 95/171 (55%), Gaps = 10/171 (5%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL + + S L +VFAE A ++ D T RSRGFGFV + S E A++AI
Sbjct: 44 KLYVGNLSWGVDDSMLTDVFAEYDASGIA-VISDMNTGRSRGFGFVEVPSQEIAEKAIAE 102
Query: 174 FDGSQIGGRTVKVNFPEVPRG-----GERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
DG+ + GR ++VN E GER P+ +N + K+Y GNL WG+
Sbjct: 103 LDGADVDGRPIRVNISEARSSRREYDGERGERAPRERN----YDFDARKVYFGNLSWGMD 158
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L+D + +++I +R TGRSRGFGFVT +AE + ++ +NG
Sbjct: 159 HLDLQDLCGEYGEVADSRLITDRETGRSRGFGFVTMSSAEQAEKVVNGLNG 209
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A ++Y GNL + M L ++ E G VA + ++ DR T RSRGFGFVTM S E+A++
Sbjct: 144 DARKVYFGNLSWGMDHLDLQDLCGEYGEVADSRLITDRETGRSRGFGFVTMSSAEQAEKV 203
Query: 171 IRLFDGSQIGGRTVKVNFPEV 191
+ +G + GR ++VN V
Sbjct: 204 VNGLNGQDVDGRVLRVNIANV 224
>gi|363814334|ref|NP_001242808.1| uncharacterized protein LOC100793319 [Glycine max]
gi|255639879|gb|ACU20232.1| unknown [Glycine max]
Length = 289
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 106/187 (56%), Gaps = 8/187 (4%)
Query: 95 EEAVEEEEEPKVAA-SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
+E EE P++ +D +LYV NL +S+T++ + ++FA++GTV EI+ + RS
Sbjct: 61 QEVAATEETPELTQPTDNVKKLYVVNLSWSLTAADINDLFAQSGTVTDVEIIKSK-DGRS 119
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD 213
+G+ FVTM S EEA+ A+ FD ++ GR ++V + + P + +
Sbjct: 120 KGYAFVTMASGEEAQAAVDKFDSYELSGRIIRVELAKRFKKPPSPPPPPGPRPG-----E 174
Query: 214 SPHKIYAGNLGWGLTSQGLRDAF-QGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+ H IYA NL W S LR F + SA+V+F+ +GRS G+GFV+F T ED ++
Sbjct: 175 TRHVIYASNLAWKARSTHLRQLFAENFKTPSSARVVFDSPSGRSAGYGFVSFLTKEDAEA 234
Query: 273 ALDAMNG 279
A+ ++G
Sbjct: 235 AISTVDG 241
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+Y NL + S+ L ++FAE T +SA +V+D + RS G+GFV+ + E+A+ AI
Sbjct: 179 IYASNLAWKARSTHLRQLFAENFKTPSSARVVFDSPSGRSAGYGFVSFLTKEDAEAAIST 238
Query: 174 FDGSQIGGRTVKVNFPE 190
DG ++ GR +++ F E
Sbjct: 239 VDGKELMGRPLRLKFSE 255
>gi|356520229|ref|XP_003528766.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 277
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 107/184 (58%), Gaps = 5/184 (2%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
V E+EE + +A +YV NLP ++ L ++F GT+ S E+ D T+ S+G G
Sbjct: 78 VLEDEEERDKRLGKACEVYVCNLPRRCDATYLLDMFRPYGTILSVEVCRDAETNESKGCG 137
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ--GFVDSP 215
+VT+GS+ A+ A+ DGS +GGR ++V F + +R + K+ +S + + +SP
Sbjct: 138 YVTLGSIYSARNAVAALDGSDVGGRELRVRF-SIEMNSKRRSFN-KMNSSTKRISYYESP 195
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
HK+Y GNL + + LRD F ++SA+V+ + G SR + F++F++ + +A+
Sbjct: 196 HKLYVGNLAKTVRPEQLRDLFSRFGNVVSARVLHDFKQGNSRVYAFLSFQSEAERDAAM- 254
Query: 276 AMNG 279
++NG
Sbjct: 255 SLNG 258
>gi|255075095|ref|XP_002501222.1| predicted protein [Micromonas sp. RCC299]
gi|226516486|gb|ACO62480.1| predicted protein [Micromonas sp. RCC299]
Length = 199
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 95/179 (53%), Gaps = 3/179 (1%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E+ + +E +LYVGNL + +T+ SLA+VF + G + +V D T RSRGFGFVT+
Sbjct: 6 EDGAAVSGEEGVKLYVGNLSWGVTNDSLADVFNQYGA-SDVTVVTDMNTGRSRGFGFVTV 64
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
A I DG+ + GR ++VN P +G+ K+Y G
Sbjct: 65 PDQAVADACIAALDGADVDGRAIRVNVSVAREDRPPRPDRPPRDGQRRGYDFDGRKVYFG 124
Query: 222 NLGWGLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL WG+ L+D G+ G + A++I +R T RSRGFGFVT T + + ++ +NG
Sbjct: 125 NLSWGMDHLDLQD-LCGEFGTVEDARLITDRETNRSRGFGFVTMSTVAEAEEVVNQLNG 182
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ ++Y GNL + M L ++ E GTV A ++ DR T+RSRGFGFVTM +V EA+E
Sbjct: 117 DGRKVYFGNLSWGMDHLDLQDLCGEFGTVEDARLITDRETNRSRGFGFVTMSTVAEAEEV 176
Query: 171 IRLFDGSQIGGRTVKVNFPEVPR 193
+ +G + GR ++VN V +
Sbjct: 177 VNQLNGQDVDGRVLRVNIANVDK 199
>gi|388521331|gb|AFK48727.1| unknown [Lotus japonicus]
Length = 285
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 97/167 (58%), Gaps = 8/167 (4%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NLP+SM+++ + ++F + GTV EI+ + R +G+ FVTM S EEA+ A+
Sbjct: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDK 145
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
FD ++ GR ++V +R ++ H IYA NL W + S LR
Sbjct: 146 FDTLELSGRILRVEL------AKRFKKPSPPGPPSPPPSEARHVIYASNLAWKVRSTHLR 199
Query: 234 DAF-QGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F + LSA+++F+ +G++ G+GF+++ T E+ ++A+ A++G
Sbjct: 200 EFFTENFKAPLSARIVFDTPSGKTTGYGFISYLTKEEAEAAISALDG 246
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVA-SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+Y NL + + S+ L E F E SA IV+D + ++ G+GF++ + EEA+ AI
Sbjct: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGKTTGYGFISYLTKEEAEAAISA 243
Query: 174 FDGSQIGGRTVKVNFPE 190
DG ++ GR++ + E
Sbjct: 244 LDGKELMGRSLFLKISE 260
>gi|388515725|gb|AFK45924.1| unknown [Lotus japonicus]
Length = 290
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 101/185 (54%), Gaps = 5/185 (2%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
EEE++P +YV NLP S ++ L ++F GT+ S E+ + T SRG G+
Sbjct: 88 EEEQQPPQRRPRGPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGY 147
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP---EVPRGGERAAMGPKLQNSYQGF-VDS 214
V M S+ AK AI DGS +GGR ++V F + R A G + + F ++
Sbjct: 148 VIMESINSAKSAIAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEA 207
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
PHK+Y GNL + + LR+ F +LS +V+ +R G++R + F++FE+ + +A+
Sbjct: 208 PHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM 267
Query: 275 DAMNG 279
++NG
Sbjct: 268 -SLNG 271
>gi|242078001|ref|XP_002443769.1| hypothetical protein SORBIDRAFT_07g001610 [Sorghum bicolor]
gi|241940119|gb|EES13264.1| hypothetical protein SORBIDRAFT_07g001610 [Sorghum bicolor]
Length = 308
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 86/160 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V NLP L ++F GTV S EI D T SRG FVTM S+ EA+ AI
Sbjct: 125 LFVCNLPRRCDVQDLLQLFTPHGTVLSVEISRDAETGISRGTAFVTMRSLAEARTAINAL 184
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
DG ++ GR V V + + +SPHK+Y GNL W + Q LR+
Sbjct: 185 DGFELDGREVFVKLASDVISNRKNVNLAHITPMKDHIFESPHKVYVGNLAWSVQPQDLRE 244
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
F ++S +++ +R GR+R +GF++F +AE+L++AL
Sbjct: 245 LFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAEELEAAL 284
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNL +S+ L E+F + GTV S ++ DR R+R +GF++ S EE + A++L
Sbjct: 227 KVYVGNLAWSVQPQDLRELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAEELEAALKL 286
Query: 174 FDGSQIGGRTVKV 186
D + GR + V
Sbjct: 287 -DRTVFFGRDIVV 298
>gi|6715645|gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana]
Length = 679
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 107/203 (52%), Gaps = 18/203 (8%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV-YDRVT 150
E +++V + EP LYV N+P S + L ++F GTV S E+V + T
Sbjct: 445 EPNKDSVVSKAEP--VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQT 502
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGS---------QIGGRTVKVNFPEVPRGGERAAMG 201
SRG G+VTMGS+ AK AI DG+ ++GGR ++V + G R
Sbjct: 503 GESRGSGYVTMGSINSAKIAIASLDGTVRARETKKQEVGGREMRVRYSVDMNPGTR--RN 560
Query: 202 PKLQNSYQGFV---DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRG 258
P++ NS + +S HK+Y GNL W GLR+ F ++S +V+ +R TGR+R
Sbjct: 561 PEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRV 620
Query: 259 FGFVTFETAEDLQSALDAMNGVV 281
F F++F + E+ +AL + NG V
Sbjct: 621 FAFLSFTSGEERDAAL-SFNGTV 642
>gi|326497679|dbj|BAK05929.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 321
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V NLP L E+F GTV S E+ D T SRG GFVTM S+ EA+ AI
Sbjct: 130 LFVCNLPRRCGVDELLELFGPYGTVLSVEVSRDAETGISRGCGFVTMRSLAEARTAINAL 189
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMG----PKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
DG + GR + V R G P +++ +S +KIY GNL W + Q
Sbjct: 190 DGFDLDGREMFVKLAAHVIASRRNPGGLSHTPPMKDH---IFESRYKIYVGNLAWSVQPQ 246
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
LR+ F ++S +++ +R GRSR +GF++F +AE+L++AL N
Sbjct: 247 HLREHFTKCGTVVSTRLLTDRKGGRSRVYGFLSFSSAEELEAALQLNN 294
>gi|115474525|ref|NP_001060859.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|50725630|dbj|BAD33097.1| putative RNA-binding protein RNP-D precursor [Oryza sativa Japonica
Group]
gi|113622828|dbj|BAF22773.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|125559951|gb|EAZ05399.1| hypothetical protein OsI_27607 [Oryza sativa Indica Group]
gi|215704603|dbj|BAG94231.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 319
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 85/164 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V NLP L E+F GTV S EI D T SRG GFVTM S+ EA+ A+
Sbjct: 136 LFVCNLPRRCDVDDLYELFKPYGTVLSVEISRDPETGLSRGCGFVTMRSLPEARTAMNAL 195
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
DG + GR + V R +SPHKIY GN+ W + Q LR+
Sbjct: 196 DGFDLDGREMLVKLSSDVVSKRRNINMTHTPPVKDHIFESPHKIYVGNIAWSVEPQELRE 255
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F ++S +++ +R GR R +GF++F +AE+L++AL N
Sbjct: 256 YFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAALKLDN 299
>gi|388504962|gb|AFK40547.1| unknown [Lotus japonicus]
Length = 285
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 95/167 (56%), Gaps = 8/167 (4%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV LP+SM+++ + ++F + GTV EI+ + R +G+ FVTM S EEA+ A+
Sbjct: 87 KLYVFTLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDK 145
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
FD ++ GR ++V +R ++ H IYA NL W + S LR
Sbjct: 146 FDTLELSGRILRVEL------AKRFKKPSPPGPPSPPPSEARHVIYASNLAWKVRSTHLR 199
Query: 234 DAF-QGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F + LSA+++F+ +G + G+GF+++ T E+ ++A+ A++G
Sbjct: 200 EFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDG 246
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVA-SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+Y NL + + S+ L E F E SA IV+D + + G+GF++ + EEA+ AI
Sbjct: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
Query: 174 FDGSQIGGRTVKVNFPE 190
DG ++ GR++ + E
Sbjct: 244 LDGKELMGRSLFLKISE 260
>gi|223942613|gb|ACN25390.1| unknown [Zea mays]
Length = 164
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 96/152 (63%), Gaps = 8/152 (5%)
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE- 190
+FA GTV AE++YD+ T+RSR FGFVTM + EEA A+ +G+++G R +KVN E
Sbjct: 1 MFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVEALNGTEVGDRKIKVNVTES 60
Query: 191 -VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIF 249
+P +R+A P+ FVDS +K+Y GNL +T++ L++ F + +LSA V
Sbjct: 61 FLP-NIDRSAPEPEAL-----FVDSQYKVYVGNLAKTVTTEVLKNFFSEKGNILSATVSH 114
Query: 250 ERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
T +S+G+GFVTF + E++++A+ N V
Sbjct: 115 IPGTSKSKGYGFVTFSSEEEVEAAVATFNNAV 146
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
EP+ D ++YVGNL ++T+ L F+E G + SA + + T +S+G+GFVT
Sbjct: 71 EPEALFVDSQYKVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFS 130
Query: 163 SVEEAKEAIRLFDGS 177
S EE + A+ F+ +
Sbjct: 131 SEEEVEAAVATFNNA 145
>gi|213404018|ref|XP_002172781.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
gi|212000828|gb|EEB06488.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
Length = 485
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 103/210 (49%), Gaps = 36/210 (17%)
Query: 106 VAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ DE++R L+VGNLPYS+ L ++F +AG V A++ + RSRG G V M +V
Sbjct: 134 MGGEDESSRQLFVGNLPYSVRWQDLKDLFRKAGNVVRADVQMNH-EGRSRGNGIVLMETV 192
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM------------------------ 200
+EA+ AIR+FD + GR ++V RGG R+ M
Sbjct: 193 QEAQMAIRMFDSTDFMGRMIEVRLDRFARGGGRSGMAFSGPPAGAYGAGPAAAAPYMGQY 252
Query: 201 -GPKLQNS-YQGFVDSPHK-------IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER 251
GP N+ FVD + I+ GNL W Q L D F + A + +E
Sbjct: 253 GGPAGYNAGPNDFVDRAYANGPPSPIIHIGNLPWLTVDQDLLDLFNSFGKIERAAIAYEP 312
Query: 252 YTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+GRSRGFG V F+T + SA++ +NG V
Sbjct: 313 -SGRSRGFGVVQFQTTPEAASAIEKLNGYV 341
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++GNLP+ L ++F G + A I Y+ + RSRGFG V + EA AI
Sbjct: 279 IHIGNLPWLTVDQDLLDLFNSFGKIERAAIAYE-PSGRSRGFGVVQFQTTPEAASAIEKL 337
Query: 175 DGSQIGGRTVKVNF 188
+G G R +++++
Sbjct: 338 NGYVYGNRPLQISY 351
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 33/161 (20%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLPY + + L + +AG V AEI+ + + +E
Sbjct: 72 RVYVGNLPYQIRWNELKDFMRQAGHVLYAEIL-------------ELPNGLSKDREQEPK 118
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
F G+ I EV R MG + ++S Q FV GNL + + Q L+
Sbjct: 119 FSGTGINS--------EVRRS---EGMGGEDESSRQLFV--------GNLPYSVRWQDLK 159
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
D F+ ++ A V + GRSRG G V ET ++ Q A+
Sbjct: 160 DLFRKAGNVVRADVQMN-HEGRSRGNGIVLMETVQEAQMAI 199
>gi|413941709|gb|AFW74358.1| hypothetical protein ZEAMMB73_309849 [Zea mays]
Length = 826
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 84/160 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V NLP L E+F GTV S EI D + SRG VTM S+ EA+ AI
Sbjct: 643 LFVCNLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAEARAAIDAL 702
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
DG + GR V V + + + ++PHK+Y GNL W + Q LR+
Sbjct: 703 DGFDMDGREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWSVQPQDLRE 762
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
F ++S +++ +R GR+R +GF++F +A++L+ AL
Sbjct: 763 LFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEAL 802
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNL +S+ L E+F + GTV S ++ DR R+R +GF++ S +E +EA++L
Sbjct: 745 KVYVGNLAWSVQPQDLRELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEALKL 804
Query: 174 FDGSQIGGRTVKVNFPEVPR 193
D + GR + V V R
Sbjct: 805 -DRTVFFGRDIVVKEAHVER 823
>gi|125563035|gb|EAZ08415.1| hypothetical protein OsI_30679 [Oryza sativa Indica Group]
Length = 226
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 97/169 (57%), Gaps = 27/169 (15%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGN+P ++T+ LA +FA+ GTV AE+++D+ T RSR FGFVTM + EEA AI
Sbjct: 69 ARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAI 128
Query: 172 RLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
+ +++GGR +KVN E +P +R+A P+ FVDS ++ G
Sbjct: 129 ESLNETEVGGRKIKVNVTESFLP-NIDRSAPEPE-----PVFVDSQYRFTLGE------- 175
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+LSA V T +S+G+GFVTF + E++++A+ N
Sbjct: 176 ------------VLSATVSRIPGTAKSKGYGFVTFSSEEEVEAAVSTFN 212
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187
G V SA + T +S+G+GFVT S EE + A+ F+ +++ G+ ++VN
Sbjct: 174 GEVLSATVSRIPGTAKSKGYGFVTFSSEEEVEAAVSTFNNAELEGQPIRVN 224
>gi|356560231|ref|XP_003548397.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 271
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 134/275 (48%), Gaps = 20/275 (7%)
Query: 16 NKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGF 75
N L++ A P++ S+ LKL+K Q + +L +Y R+ +
Sbjct: 6 NTLFHTHAFVVTPSSSYSSV------HTLKLQKPQ----VKRFVLLFAYPRRSRTFLEPS 55
Query: 76 QVTEDSQDEPETEQEEEE-----EEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLA 130
+ +T++ EE E + V E+EE + +A +YV NLP S ++ L
Sbjct: 56 TSSSSFSPVRKTKEVAEEYVYPPENDDVLEDEEEREKRLGKACEVYVCNLPRSCDAAYLL 115
Query: 131 EVFAEAGTVASAEIVYDRV-TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189
++F GT+ S E+V + S+G +VT+GS+ A+ A+ DGS +GG ++V F
Sbjct: 116 DMFRPYGTILSIEVVCRNAENNESKGCSYVTLGSIHSARNAVAALDGSDVGGCELRVRF- 174
Query: 190 EVPRGGERAAMGPKLQNSYQ--GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKV 247
+ R + K+ +S + + +SPHK+Y GNL + + LRD F ++SA+V
Sbjct: 175 SIEMNSRRRSFN-KMNSSTKRISYYESPHKLYVGNLAKTVRPEQLRDLFCRFGNIVSARV 233
Query: 248 IFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282
+ + G SR + F++F++ E L GV R
Sbjct: 234 LRDFKQGNSRVYAFLSFQSEEFYGRTLIVKEGVER 268
>gi|357165665|ref|XP_003580455.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like isoform 1
[Brachypodium distachyon]
gi|357165668|ref|XP_003580456.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like isoform 2
[Brachypodium distachyon]
Length = 286
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 97/166 (58%), Gaps = 14/166 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVTMGSVEEAKEAIRL 173
LYV NLP+++ + + ++FAE G V +++ ++ D R RGF FVTMGS EEA A+
Sbjct: 82 LYVANLPWTLPAVEIEKLFAECGVVKDVQVI--KMKDGRKRGFAFVTMGSAEEAAAAVEK 139
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
F+ + GR +KV F + R P++ ++ + + HK+Y NL W S ++
Sbjct: 140 FNSYDVMGRIIKVEFSKT----FRKPAPPRIPST----IFARHKLYVSNLAWKARSSDIK 191
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF Q +SA V+F+ +S G+GFV+F+T ED ++AL +NG
Sbjct: 192 -AFFSQFNPISANVVFD--DKKSAGYGFVSFQTKEDAEAALSELNG 234
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NL + SS + F++ + SA +V+D +S G+GFV+ + E+A+ A+
Sbjct: 175 KLYVSNLAWKARSSDIKAFFSQFNPI-SANVVFD--DKKSAGYGFVSFQTKEDAEAALSE 231
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERA---AMGPKLQNSYQGFV 212
+G ++ R V + + + +GG +A G K+ + +G +
Sbjct: 232 LNGKELLERPVLLRWRD-DKGGVKADGEVQGVKVDDQAEGVM 272
>gi|134106861|ref|XP_777972.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260672|gb|EAL23325.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 444
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 104/190 (54%), Gaps = 9/190 (4%)
Query: 94 EEEAVEEEEEPKVAASDEAA--RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
EEE++ ++ + DE A ++VG L +++ + L F G V SA +V+DR +
Sbjct: 175 EEESIAPAKKARADGGDEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQ 234
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF 211
+SRGFG+V +E + +AI DGS+I GR ++VN+ + E A ++ N Q
Sbjct: 235 KSRGFGYVEFADLESSAKAIEK-DGSEIDGRAIRVNYATQRKPNEAAEKRARVFNDKQ-- 291
Query: 212 VDSP--HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
SP ++ G+L + +T + +AF + S ++ +R TG +GFG+V F + +D
Sbjct: 292 --SPPAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDD 349
Query: 270 LQSALDAMNG 279
+AL AMNG
Sbjct: 350 ASAALKAMNG 359
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A L++G+L +S+T + E F + G V S + DR T +GFG+V SV++A A+
Sbjct: 295 AETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDASAAL 354
Query: 172 RLFDGSQIGGRTVKVNF 188
+ +G++I GR ++V+F
Sbjct: 355 KAMNGAEIAGRAIRVDF 371
>gi|58258845|ref|XP_566835.1| single-stranded DNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57222972|gb|AAW41016.1| single-stranded DNA binding protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 441
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 104/190 (54%), Gaps = 9/190 (4%)
Query: 94 EEEAVEEEEEPKVAASDEAA--RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
EEE++ ++ + DE A ++VG L +++ + L F G V SA +V+DR +
Sbjct: 172 EEESIAPAKKARADGGDEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQ 231
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF 211
+SRGFG+V +E + +AI DGS+I GR ++VN+ + E A ++ N Q
Sbjct: 232 KSRGFGYVEFADLESSAKAIEK-DGSEIDGRAIRVNYATQRKPNEAAEKRARVFNDKQ-- 288
Query: 212 VDSP--HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
SP ++ G+L + +T + +AF + S ++ +R TG +GFG+V F + +D
Sbjct: 289 --SPPAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDD 346
Query: 270 LQSALDAMNG 279
+AL AMNG
Sbjct: 347 ASAALKAMNG 356
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A L++G+L +S+T + E F + G V S + DR T +GFG+V SV++A A+
Sbjct: 292 AETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDASAAL 351
Query: 172 RLFDGSQIGGRTVKVNF 188
+ +G++I GR ++V+F
Sbjct: 352 KAMNGAEIAGRAIRVDF 368
>gi|212722626|ref|NP_001131649.1| uncharacterized protein LOC100193009 [Zea mays]
gi|194692152|gb|ACF80160.1| unknown [Zea mays]
Length = 314
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 84/160 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V NLP L E+F GTV S EI D + SRG VTM S+ EA+ AI
Sbjct: 131 LFVCNLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAEARAAIDAL 190
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
DG + GR V V + + + ++PHK+Y GNL W + Q LR+
Sbjct: 191 DGFDMDGREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWSVQPQDLRE 250
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
F ++S +++ +R GR+R +GF++F +A++L+ AL
Sbjct: 251 LFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEAL 290
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNL +S+ L E+F + GTV S ++ DR R+R +GF++ S +E +EA++L
Sbjct: 233 KVYVGNLAWSVQPQDLRELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEALKL 292
Query: 174 FDGSQIGGRTVKVNFPEVPR 193
D + GR + V V R
Sbjct: 293 -DRTVFFGRDIVVKEAHVER 311
>gi|296089011|emb|CBI38714.3| unnamed protein product [Vitis vinifera]
Length = 166
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 7/151 (4%)
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP-- 189
+F GTV S E+ + T SRG G+VTM S+ EAK AI DGS +GGR ++V F
Sbjct: 1 MFKPHGTVQSIEVCRNAETGVSRGSGYVTMSSMREAKAAIAALDGSDVGGREMRVRFSTD 60
Query: 190 -EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
R A ++N +SP+K+Y GNL W + + LR+ F ++SA+V+
Sbjct: 61 MNFRRRNSEALNSAPMRNL---IFESPYKLYVGNLAWAIKPEDLRNHFSQFGTVVSARVV 117
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+R G+ R +GF++F +A + ++A+ ++NG
Sbjct: 118 HDRKAGKHRAYGFLSFSSAAECEAAM-SLNG 147
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL +++ L F++ GTV SA +V+DR + R +GF++ S E + A+ L
Sbjct: 86 KLYVGNLAWAIKPEDLRNHFSQFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECEAAMSL 145
Query: 174 FDGSQIGGRTVKVN 187
+G + GR++ V+
Sbjct: 146 -NGKEFRGRSLVVS 158
>gi|357139508|ref|XP_003571323.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 288
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V NLP L +F GTV S E+ D T SRG GFVTM S+ A+ A+
Sbjct: 103 LFVCNLPRRCGVDDLLHLFQPYGTVLSVEVSRDPETGISRGCGFVTMRSLAAARTAMNAL 162
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS---YQGFVDSPHKIYAGNLGWGLTSQG 231
DG + GR + V R P L ++ +SP+KIY GNL W + Q
Sbjct: 163 DGFDLDGREMFVKLASHVVSNRR---NPSLSHTAPMKDHIFESPYKIYVGNLAWSVQPQH 219
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
LR+ F ++S +++ +R R+R +GF++F + E+L +AL N
Sbjct: 220 LRELFTQCGNIVSTRLLTDRKGARNRVYGFLSFSSPEELDAALKLNN 266
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 96/173 (55%), Gaps = 19/173 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL +++ LA FA+ GTV SA I+ D+ T R++GFG+VT S + A+ L
Sbjct: 185 VFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRAKGFGYVTFESADALTAAMAL- 243
Query: 175 DGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHK-----IYAGNLGWGL 227
G+++ GR ++V+ P+ PR G R QG ++P ++ GNL + +
Sbjct: 244 TGTELDGREIRVDVSTPKPPRDGNR-----------QGRKEAPQSAPTTTLFLGNLSFNV 292
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T +R++F L+S + +R TG +GFG+V + E Q A++ +NGV
Sbjct: 293 TEDEIRESFSQYGQLVSVRFPTDRDTGAFKGFGYVEYGDVETAQKAVEGLNGV 345
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL +++T + E F++ G + S DR T +GFG+V G VE A++A+
Sbjct: 283 LFLGNLSFNVTEDEIRESFSQYGQLVSVRFPTDRDTGAFKGFGYVEYGDVETAQKAVEGL 342
Query: 175 DGSQIGGRTVKVNF 188
+G +I GR++++++
Sbjct: 343 NGVEIAGRSLRLDY 356
>gi|242822492|ref|XP_002487897.1| nucleolin protein Nsr1, putative [Talaromyces stipitatus ATCC
10500]
gi|218712818|gb|EED12243.1| nucleolin protein Nsr1, putative [Talaromyces stipitatus ATCC
10500]
Length = 479
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 105/196 (53%), Gaps = 5/196 (2%)
Query: 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR 148
++ + EEE ++ K ++D + L+VGNL +++ L F E G ++ I+ +R
Sbjct: 207 KKRKAEEEPATNAKKSKTESADNSPNLFVGNLSWNVDEEWLRREFEEFGELSGVRIMTER 266
Query: 149 VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ RSRGFG+V AK A ++I GRT+ +++ + PR A K QN
Sbjct: 267 ESGRSRGFGYVEYADASSAKAAYEAKKDAEIDGRTINLDYAK-PRDANNQAPREKAQNRA 325
Query: 209 QGFVD--SP--HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
+ F D SP + ++ GNL +G+ +R+ F+GQ + ++ + TGR +G+G+V F
Sbjct: 326 RSFGDQTSPESNTLFVGNLVFGVDENAVREVFEGQGQIQGIRLPTDAETGRPKGYGYVEF 385
Query: 265 ETAEDLQSALDAMNGV 280
+ ++ + AL+ + G
Sbjct: 386 SSVDEARQALNDLQGT 401
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGNL + + +++ EVF G + + D T R +G+G+V SV+EA+
Sbjct: 333 SPESNTLFVGNLVFGVDENAVREVFEGQGQIQGIRLPTDAETGRPKGYGYVEFSSVDEAR 392
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
+A+ G+ IGGR ++++F PR
Sbjct: 393 QALNDLQGTDIGGRAIRLDF-STPR 416
>gi|321249350|ref|XP_003191429.1| single-stranded DNA binding protein [Cryptococcus gattii WM276]
gi|317457896|gb|ADV19642.1| single-stranded DNA binding protein, putative [Cryptococcus gattii
WM276]
Length = 442
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L +++ + L F G V SA +V+DR + +SRGFG+V +E + +AI
Sbjct: 196 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLEASAKAIEK- 254
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP--HKIYAGNLGWGLTSQGL 232
DGS+I GR ++VN+ + E A K+ N Q SP ++ G+L + +T +
Sbjct: 255 DGSEIDGRAIRVNYATQRKPNEAAEKRAKVFNDKQ----SPPAETLWIGSLSFSVTEDQV 310
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+AF + S ++ +R TG +GFG+V F + ED +AL AMNG
Sbjct: 311 YEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVEDASAALKAMNGA 358
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S A L++G+L +S+T + E F + G V S + DR T +GFG+V SVE+A
Sbjct: 290 SPPAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVEDAS 349
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
A++ +G++I GR ++V+F
Sbjct: 350 AALKAMNGAEIAGRAIRVDF 369
>gi|426198367|gb|EKV48293.1| hypothetical protein AGABI2DRAFT_142473 [Agaricus bisporus var.
bisporus H97]
Length = 559
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 107/190 (56%), Gaps = 9/190 (4%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
+EE+ EA + + +P A+ E ++VG L +S+ + LA+ F+E G V+SA + DR T
Sbjct: 289 DEEQPEAKKVKLDP---ATPETLSIFVGQLSWSVDNDRLAQEFSECGEVSSATVQLDRNT 345
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQG 210
RSRGFG+V + + ++A+++ +G +I GR +KV+ P + K+ N
Sbjct: 346 GRSRGFGYVHFSTADAVEKALKM-NGYEIDGRAIKVDLSTPPNSNQIRERRAKVFNDE-- 402
Query: 211 FVDSPHK-IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
+ P ++ GNL + +T GL F G + + ++ +R TG+ +GFG+V E ED
Sbjct: 403 -ISPPSSTLFIGNLPFSITEDGLWSYFDGH-SVKTIRLPTDRETGQLKGFGYVELENVED 460
Query: 270 LQSALDAMNG 279
+ A +A++G
Sbjct: 461 AKKAFEAISG 470
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 8/122 (6%)
Query: 72 FDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAE 131
DG + D P + Q E + +E P ++ L++GNLP+S+T L
Sbjct: 373 IDGRAIKVDLSTPPNSNQIRERRAKVFNDEISP------PSSTLFIGNLPFSITEDGLWS 426
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191
F + +V + + DR T + +GFG+V + +VE+AK+A G +I GR V+V++ +
Sbjct: 427 YF-DGHSVKTIRLPTDRETGQLKGFGYVELENVEDAKKAFEAISGQEIEGRRVRVDYSQ- 484
Query: 192 PR 193
PR
Sbjct: 485 PR 486
>gi|308807591|ref|XP_003081106.1| Ps16 protein (ISS) [Ostreococcus tauri]
gi|116059568|emb|CAL55275.1| Ps16 protein (ISS) [Ostreococcus tauri]
Length = 1094
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 4/167 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + +T SLAE+F+E V A ++ DR T RSRGF FV+M + E+ + A
Sbjct: 915 RVYVGNLSWGVTDESLAELFSEF-DVRDASVMKDRETGRSRGFAFVSMNNEEDVERASAA 973
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLGWGLTSQGL 232
+G ++ GR ++V+ + ER ++ + F + ++Y GNL WG+ L
Sbjct: 974 LNGREVDGRELRVSKAQA--QAERGERPMRMPRQRRDFDQAEGRRVYFGNLSWGMDQYDL 1031
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+D + +++I +R TGRSRGFGFVT + + +NG
Sbjct: 1032 QDLCSEFGSVEDSRLITDRDTGRSRGFGFVTMSNTTEADEVVAQLNG 1078
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E R+Y GNL + M L ++ +E G+V + ++ DR T RSRGFGFVTM + EA E
Sbjct: 1013 EGRRVYFGNLSWGMDQYDLQDLCSEFGSVEDSRLITDRDTGRSRGFGFVTMSNTTEADEV 1072
Query: 171 IRLFDGSQIGGRTVKVNF 188
+ +G + GR ++VN
Sbjct: 1073 VAQLNGQDVDGRVLRVNI 1090
>gi|389633057|ref|XP_003714181.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|351646514|gb|EHA54374.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|440473688|gb|ELQ42470.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae Y34]
gi|440486239|gb|ELQ66126.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae P131]
Length = 486
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 93/175 (53%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
K SD+ + L+VGNL +++ + LAE F GTV SA ++ DR + RS+GFG+V +
Sbjct: 231 KTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATP 290
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
EEA++A G+ I GR +KV+F A G + + ++ GNL
Sbjct: 291 EEAEKAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLP 350
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + F + S ++ E+ +GR +GFG+VTF + ED +SA + +NG
Sbjct: 351 FDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNG 405
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGNLP+ S+ F+E V S + ++ + R +GFG+VT SVE+AK
Sbjct: 338 SPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAK 397
Query: 169 EAIRLFDGSQIGGRTVKVNF--PEVPR 193
A +G I GR ++++ P PR
Sbjct: 398 SAFEQLNGQSINGRNCRLDYSTPRPPR 424
>gi|409079870|gb|EKM80231.1| hypothetical protein AGABI1DRAFT_73218 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 568
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 107/190 (56%), Gaps = 9/190 (4%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
+EE+ EA + + +P A+ E ++VG L +S+ + LA+ F+E G V+SA + DR T
Sbjct: 289 DEEQPEAKKVKLDP---ATPETLSIFVGQLSWSVDNDRLAQEFSECGEVSSATVQLDRNT 345
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQG 210
RSRGFG+V + + ++A+++ +G +I GR +KV+ P + K+ N
Sbjct: 346 GRSRGFGYVHFSTADAVEKALKM-NGYEIDGRAIKVDLSTPPNSNQIRERRAKVFNDE-- 402
Query: 211 FVDSPHK-IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
+ P ++ GNL + +T GL F G + + ++ +R TG+ +GFG+V E ED
Sbjct: 403 -ISPPSSTLFIGNLPFSITEDGLWSYFDGH-SVKTIRLPTDRETGQLKGFGYVELENVED 460
Query: 270 LQSALDAMNG 279
+ A +A++G
Sbjct: 461 AKKAFEAISG 470
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 8/122 (6%)
Query: 72 FDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAE 131
DG + D P + Q E + +E P ++ L++GNLP+S+T L
Sbjct: 373 IDGRAIKVDLSTPPNSNQIRERRAKVFNDEISP------PSSTLFIGNLPFSITEDGLWS 426
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191
F + +V + + DR T + +GFG+V + +VE+AK+A G +I GR V+V++ +
Sbjct: 427 YF-DGHSVKTIRLPTDRETGQLKGFGYVELENVEDAKKAFEAISGQEIEGRRVRVDYSQ- 484
Query: 192 PR 193
PR
Sbjct: 485 PR 486
>gi|217072826|gb|ACJ84773.1| unknown [Medicago truncatula]
Length = 232
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 78/135 (57%), Gaps = 10/135 (7%)
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR 152
E E ++ E E A+L+VGN P+ + S LA +F +AGTV AE++Y+R TD
Sbjct: 89 ETETGADDSAEGYFVEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDL 148
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGG--ERAAMGPKLQNSYQG 210
SRGFGFVTM +VEEA+ A+ F+G GR++ VN P+G ER P+ +++
Sbjct: 149 SRGFGFVTMNTVEEAESAVEKFNGYDYNGRSLVVN-KASPKGSRPERTERAPR---TFEP 204
Query: 211 FVDSPHKIYAGNLGW 225
+ +IY NL W
Sbjct: 205 VL----RIYVANLAW 215
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 211 FVDSPH--KIYAGNLGWGLTSQGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETA 267
FV+ P K++ GN + + S+ L F GQ G + A+VI+ R T SRGFGFVT T
Sbjct: 102 FVEPPEDAKLFVGNFPFDVDSEKLAMLF-GQAGTVEIAEVIYNRQTDLSRGFGFVTMNTV 160
Query: 268 EDLQSALDAMNG 279
E+ +SA++ NG
Sbjct: 161 EEAESAVEKFNG 172
>gi|115476954|ref|NP_001062073.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|42408160|dbj|BAD09298.1| putative RNA-binding protein cp33 [Oryza sativa Japonica Group]
gi|113624042|dbj|BAF23987.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|125561943|gb|EAZ07391.1| hypothetical protein OsI_29641 [Oryza sativa Indica Group]
gi|125603790|gb|EAZ43115.1| hypothetical protein OsJ_27706 [Oryza sativa Japonica Group]
gi|215686913|dbj|BAG90783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701414|dbj|BAG92838.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 14/168 (8%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEI-VYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
RL N+P+ T+ + +F + G+V E+ +Y+ + R+RG FVTMGS EEA A+
Sbjct: 74 RLIAQNIPWDCTADDMRALFGKHGSVVDVELSMYN--STRNRGLAFVTMGSEEEALSALN 131
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + + RT+KV+F + P + H ++ GNL W + S+ L
Sbjct: 132 HLNSTTLNDRTIKVDFTRSRKKQYVVPSAPMPK----------HSVFVGNLTWRVRSRHL 181
Query: 233 RDAFQGQPGLLSAKVIFERYT-GRSRGFGFVTFETAEDLQSALDAMNG 279
R+ F PG+ S +V+F + RS G+GFV+F + E ++A+ NG
Sbjct: 182 RELFASTPGVQSVEVVFHTTSPRRSAGYGFVSFSSKEAAEAAISTFNG 229
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT-DRSRGFGFVTMGSVEEAKEAIRL 173
++VGNL + + S L E+FA V S E+V+ + RS G+GFV+ S E A+ AI
Sbjct: 167 VFVGNLTWRVRSRHLRELFASTPGVQSVEVVFHTTSPRRSAGYGFVSFSSKEAAEAAIST 226
Query: 174 FDGSQIGGRTVKVNFPE 190
F+G+++ GR++ V F +
Sbjct: 227 FNGTKLMGRSINVMFKD 243
>gi|325179817|emb|CCA14220.1| RNA binding protein putative [Albugo laibachii Nc14]
Length = 360
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 26/207 (12%)
Query: 98 VEEEEEPKVAASDEA--ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRG 155
V E+ E +A A R+YVGNLP+++ +L + +AGTV A+++ + S+G
Sbjct: 141 VREDREENASAQPRAKGCRVYVGNLPWTVKWQALKDHMKQAGTVIHADVL-EEAGGWSKG 199
Query: 156 FGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGER------------------ 197
G V + +EA+ AI + + +++ GR + V P GG
Sbjct: 200 CGLVEFSTPDEAQNAIDMLNDTELEGRNIFVREDREPDGGSITSIARRGGRGGRSSGGRG 259
Query: 198 ----AAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT 253
A GP+ NS ++Y GNL W TS+ L + FQ + A+V+ E
Sbjct: 260 NSRFAGRGPREGNSGHSHSSDVKQVYVGNLPWDTTSRNLENLFQSAGDVERAEVV-EFPD 318
Query: 254 GRSRGFGFVTFETAEDLQSALDAMNGV 280
GRSRGFG V F+++ + Q A+D +NG
Sbjct: 319 GRSRGFGIVKFKSSSEAQCAIDELNGT 345
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 16/165 (9%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + L + AG V A I+ V RS+G G VT + EA+ AI
Sbjct: 71 RVYVGNLSWKVKWQDLKDHMRSAGDVEHAVIM--EVGGRSKGCGIVTYATESEAQNAIET 128
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +++ GR + F R E A+ P+ + ++Y GNL W + Q L+
Sbjct: 129 LNDTELDGRKI---FVREDR-EENASAQPRAKGC---------RVYVGNLPWTVKWQALK 175
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
D + Q G + + E G S+G G V F T ++ Q+A+D +N
Sbjct: 176 DHMK-QAGTVIHADVLEEAGGWSKGCGLVEFSTPDEAQNAIDMLN 219
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S + ++YVGNLP+ TS +L +F AG V AE+V + RSRGFG V S EA+
Sbjct: 278 SSDVKQVYVGNLPWDTTSRNLENLFQSAGDVERAEVV-EFPDGRSRGFGIVKFKSSSEAQ 336
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI +G++ GR ++V
Sbjct: 337 CAIDELNGTEHNGRRLEVRL 356
>gi|453089427|gb|EMF17467.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 501
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 9/204 (4%)
Query: 84 EPETEQEEEEEEEAVEEEEEPKVAAS----DEAARLYVGNLPYSMTSSSLAEVFAEAGTV 139
+P T+ E ++ + E EE K A + D A L++GNL +++ L F E G +
Sbjct: 207 KPATQSESKKRKADSEPEETSKKAKTESNPDAVANLFIGNLSWNVDEEWLTREFEEFGEL 266
Query: 140 ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA 199
A I+ DR + RS+GFG+V + E+A +A+ + S + R ++V+F PR A
Sbjct: 267 AGVRIITDRDSGRSKGFGYVEFTNAEDAAKALEAKNESLLDNRNIRVDF-STPRDKSNAG 325
Query: 200 MGPKLQNSYQGFVDSPHK----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 255
+ + Q F D+P + I+ GNL + T +R+ F + S ++ +R TG
Sbjct: 326 PQQRSNDRQQKFGDAPGEPTATIWCGNLSFDATEDVVREYFAEHGNVNSIRLPTDRDTGA 385
Query: 256 SRGFGFVTFETAEDLQSALDAMNG 279
+GFG+V + E+ Q+A +A+ G
Sbjct: 386 PKGFGYVEMGSVEEAQAAFNALQG 409
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A ++ GNL + T + E FAE G V S + DR T +GFG+V MGSVEEA+ A
Sbjct: 346 ATIWCGNLSFDATEDVVREYFAEHGNVNSIRLPTDRDTGAPKGFGYVEMGSVEEAQAAFN 405
Query: 173 LFDGSQIGGRTVKVNF--PEVPR 193
G +GGR V++++ P PR
Sbjct: 406 ALQGQDVGGRPVRLDYAQPRPPR 428
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 17/193 (8%)
Query: 98 VEEEEEPKVAASDEA--ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRG 155
V++ E + DE LYV NL MT + +F+ G + SA I+ D +SRG
Sbjct: 182 VKKSERTTATSYDELKFTNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDH-NGKSRG 240
Query: 156 FGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDS- 214
FGFV S E+AK+A+ +G Q+ RT+ V R +A LQ+ Y+ ++
Sbjct: 241 FGFVDFESPEDAKKAVDALNGYQLESRTLFVG-----RAQAKAERKKILQHEYKDIFNTH 295
Query: 215 -----PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY-TGRSRGFGFVTFETAE 268
+Y NL + + L++ F ++SAKV+ RY G SRGFGFV F + E
Sbjct: 296 MEKFKASNLYVKNLALCIDNDKLQELFSCSGKIVSAKVM--RYDNGASRGFGFVCFSSPE 353
Query: 269 DLQSALDAMNGVV 281
+ + AL+A+NG V
Sbjct: 354 EAKKALNALNGAV 366
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL S+ S+ L +F++ GT+ S ++V + +S+G+GFV S + A A
Sbjct: 109 LYVKNLDASIDSAGLQSLFSKFGTILSCKVVEEH--GKSKGYGFVQFDSEDSALAARTAL 166
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + + V+ + ER SY + +Y NL +T +
Sbjct: 167 HDTMLKEKKLYVS--RFVKKSERTT-----ATSYDELKFT--NLYVKNLSKDMTQDAFHN 217
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F ++SA VI + + G+SRGFGFV FE+ ED + A+DA+NG
Sbjct: 218 MFSAFGEIISA-VIMQDHNGKSRGFGFVDFESPEDAKKAVDALNG 261
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +T +L VF+ G + + + +T RS +G+V +A +A+
Sbjct: 21 LYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKALSNL 80
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G+ +++ + + ++ +G +Y NL + S GL+
Sbjct: 81 NHTYLKGKLMRIMWCQRNPCARKSGIG---------------NLYVKNLDASIDSAGLQS 125
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV+ E G+S+G+GFV F++ + +A A++ +
Sbjct: 126 LFSKFGTILSCKVVEEH--GKSKGYGFVQFDSEDSALAARTALHDTM 170
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV-YDRVTDRSRGFGFVTMGSVEEAKE 169
+A+ LYV NL + + L E+F+ +G + SA+++ YD SRGFGFV S EEAK+
Sbjct: 300 KASNLYVKNLALCIDNDKLQELFSCSGKIVSAKVMRYD--NGASRGFGFVCFSSPEEAKK 357
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERA 198
A+ +G+ G+++ V + R + A
Sbjct: 358 ALNALNGAVFQGKSLYVAMAQCKRDRQLA 386
>gi|400602999|gb|EJP70597.1| cutinase negative acting protein [Beauveria bassiana ARSEF 2860]
Length = 448
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 10/201 (4%)
Query: 87 TEQEEEEEEEAVEE-EEEPKVAASDEAA-RLYVGNLPYSMTSSSLAEVFAEAGTVASAEI 144
TE ++ +A +E +E PK A SD+A L+ G+L + + ++L E F G + SA +
Sbjct: 175 TEAAPSKKRKAEDEIDEAPKKAKSDDAPMTLFAGSLSWGVDDNALYEAFKSFGNIVSARV 234
Query: 145 VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF----PEVPRGGERAAM 200
V D+ T RSRGFG+V G E A +A G +I GR + +++ P + +RAA
Sbjct: 235 VTDKNTGRSRGFGYVDFGDSESATKAYEAMQGQEIDGRALNLDYANAKPTEGKPQDRAAD 294
Query: 201 GPKLQ-NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF 259
K ++ D+ ++ GNL + +R F + S ++ + +G +GF
Sbjct: 295 RAKRHGDTLSAESDT---LFVGNLPFDTEQDTVRQFFSEVAEVASVRLPTDPDSGNLKGF 351
Query: 260 GFVTFETAEDLQSALDAMNGV 280
G+VTF + ED +SALDA NG
Sbjct: 352 GYVTFNSIEDAKSALDAKNGA 372
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 101 EEEPKVAASDEAAR-----------LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E +P+ A+D A R L+VGNLP+ ++ + F+E VAS + D
Sbjct: 285 EGKPQDRAADRAKRHGDTLSAESDTLFVGNLPFDTEQDTVRQFFSEVAEVASVRLPTDPD 344
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG----RTVKVNF 188
+ +GFG+VT S+E+AK A+ +G+ IG R V+++F
Sbjct: 345 SGNLKGFGYVTFNSIEDAKSALDAKNGASIGNGRNSRAVRLDF 387
>gi|412986787|emb|CCO15213.1| predicted protein [Bathycoccus prasinos]
Length = 260
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 6/166 (3%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY+GNL + M +L ++F++ + IV DR T RSRGFGF T+ S E A AI
Sbjct: 75 KLYIGNLSWDMDDQALNDLFSQY-QASDCVIVTDRNTGRSRGFGFATVPSQEMADSAIAA 133
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ S GR ++V P ER A + + ++ K+Y GNL WG+ L+
Sbjct: 134 LNDSDQFGRQMRVVISLPPE--ERPAREQRPKRNWDA---DGRKVYFGNLSWGMDHLDLQ 188
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D + +++I +R TGRSRGFGFVT + ++ + + +NG
Sbjct: 189 DLCAEFGNVDESRLITDRETGRSRGFGFVTMSSEKEAEDVVAQLNG 234
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%)
Query: 95 EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSR 154
EE E+ PK + ++Y GNL + M L ++ AE G V + ++ DR T RSR
Sbjct: 153 EERPAREQRPKRNWDADGRKVYFGNLSWGMDHLDLQDLCAEFGNVDESRLITDRETGRSR 212
Query: 155 GFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
GFGFVTM S +EA++ + +G + GR ++VN
Sbjct: 213 GFGFVTMSSEKEAEDVVAQLNGQDVDGRVLRVNI 246
>gi|294897114|ref|XP_002775830.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239882183|gb|EER07646.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 323
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 3/173 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A+++ +L+VG +P +T + F++ G V A ++ D++T R RGFGFVT + +E
Sbjct: 73 AAEDRRQLFVGGIPEGITDDGFHQYFSQFGHVERAIVMTDKMTGRCRGFGFVTYSTTDEV 132
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN--SYQGFVDSPHKIYAGNLGW 225
+ I Q+ G+ V VN + P+ R G S +G D P K++ G L
Sbjct: 133 EVVIMKGGPHQLNGKRVDVNRSQDPKDPHRGGWGSDRSGGPSRRGG-DDPMKVFCGGLQS 191
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L+S+ LR F ++ + +R TGRS+G+GFVTF++ + + +A++ N
Sbjct: 192 TLSSERLRQHFSQYGNIVDCIAMRDRDTGRSKGYGFVTFDSEDAVAAAINGNN 244
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P D+ +++ G L +++S L + F++ G + + DR T RS+G+GFVT S
Sbjct: 173 PSRRGGDDPMKVFCGGLQSTLSSERLRQHFSQYGNIVDCIAMRDRDTGRSKGYGFVTFDS 232
Query: 164 VEEAKEAIRLFDGSQIGGRTVKVN 187
+ AI + I GR V+ +
Sbjct: 233 EDAVAAAIN--GNNMIDGRWVRTS 254
>gi|359481379|ref|XP_003632613.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 2 [Vitis
vinifera]
Length = 254
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 26/189 (13%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
E++E+ + +E EP + +L+VGNLP+++ S+ LA +F +AG V E + R
Sbjct: 72 EQDEDVLSDEGEPSFSPD---LKLFVGNLPFNVDSAGLAGLFEQAGNVEMVEELEGRQLR 128
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF 211
+ G A+ F G R NF PRGG
Sbjct: 129 VNSG--------PPPARRENSNFRGENSNFRGENTNF-RGPRGGAN-------------- 165
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
++S ++IY GNL WG+ L F Q + A+VI++R TGRSRGFGFVT+ +AE++
Sbjct: 166 LNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVN 225
Query: 272 SALDAMNGV 280
A+++++GV
Sbjct: 226 RAIESLDGV 234
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + +L +F+E G V A ++YDR T RSRGFGFVT S EE AI
Sbjct: 171 RIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIES 230
Query: 174 FDGSQIGGRTVKVNFPEV-PR 193
DG + GR+++V E PR
Sbjct: 231 LDGVDLNGRSIRVTMAEARPR 251
>gi|392592716|gb|EIW82042.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 589
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 5/172 (2%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E ++VG L +++ + LA+ FAE G V SA + DR T RSRGFG+V + E ++
Sbjct: 330 NEIKSIFVGRLSWNVDNDWLAKEFAECGEVVSATVQMDRSTGRSRGFGYVHFSTSEAVEK 389
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH-KIYAGNLGWGLT 228
AI L +G +I GR V V+ P + A K ++ P ++ GNL +G+
Sbjct: 390 AIEL-NGKEIDGRAVNVDKSNPP---NKDASREKRAKTFGDTTSPPSATLFVGNLSFGMN 445
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L +AF + + ++ +R +GR +GFG+V F E + A AM GV
Sbjct: 446 DDALWEAFSEHGEVKNVRLPTDRESGRPKGFGYVEFSDVETAKKAHAAMQGV 497
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 72 FDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAE 131
DG V D + P + E+ + + P +A L+VGNL + M +L E
Sbjct: 398 IDGRAVNVDKSNPPNKDASREKRAKTFGDTTSP------PSATLFVGNLSFGMNDDALWE 451
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191
F+E G V + + DR + R +GFG+V VE AK+A G ++ GR+V+++F +
Sbjct: 452 AFSEHGEVKNVRLPTDRESGRPKGFGYVEFSDVETAKKAHAAMQGVELDGRSVRLDFSQ- 510
Query: 192 PR 193
PR
Sbjct: 511 PR 512
>gi|301087136|gb|ADK60785.1| chloroplast ribonucleoprotein [Arachis diogoi]
Length = 146
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 60/75 (80%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNLP+S+ S+ LAE+F AGTV E++YD+++ RSRGFGFVTM S+EEA+ A +
Sbjct: 69 KLFVGNLPFSVDSAQLAELFESAGTVEVVEVIYDKMSGRSRGFGFVTMSSIEEAEAAKQQ 128
Query: 174 FDGSQIGGRTVKVNF 188
FDG ++ GR ++VN+
Sbjct: 129 FDGYELDGRALRVNW 143
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ GNL + + S L + F+ + +VI+++ +GRSRGFGFVT + E+ ++A
Sbjct: 69 KLFVGNLPFSVDSAQLAELFESAGTVEVVEVIYDKMSGRSRGFGFVTMSSIEEAEAAKQQ 128
Query: 277 MNG 279
+G
Sbjct: 129 FDG 131
>gi|226492336|ref|NP_001150253.1| ribonucleoprotein [Zea mays]
gi|195637832|gb|ACG38384.1| ribonucleoprotein [Zea mays]
Length = 275
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 11/170 (6%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEI-VYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
RL N+P+ T+ + +F G+V E+ +Y +++RG FVTMGS EEA A+
Sbjct: 72 RLVAQNIPWDCTADEMRALFESHGSVVGVELSMYS--ANKNRGLAFVTMGSEEEALAALT 129
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + + R +KV+F PR + PK Q + + ++ GNL W + ++ L
Sbjct: 130 HLNSTILNDRKIKVDFAR-PRKKQ-----PK-QPAVVSDATEKYVVFVGNLTWRVRNRHL 182
Query: 233 RDAFQGQPGLLSAKVIFERYT-GRSRGFGFVTFETAEDLQSALDAMNGVV 281
R+ F PG++SA+VIF T RS G+ FV+F + E +A+ A NG +
Sbjct: 183 RELFASAPGVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKI 232
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 101 EEEPK----VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT-DRSRG 155
+++PK V+ + E ++VGNL + + + L E+FA A V SAE+++ T RS G
Sbjct: 150 KKQPKQPAVVSDATEKYVVFVGNLTWRVRNRHLRELFASAPGVVSAEVIFHTTTPRRSAG 209
Query: 156 FGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
+ FV+ S E A AI F+G + GR + V F +
Sbjct: 210 YAFVSFSSKESAGAAISAFNGKILMGRPINVMFKD 244
>gi|340914665|gb|EGS18006.1| hypothetical protein CTHT_0060190 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 539
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 94/173 (54%), Gaps = 2/173 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S++ A L+VGNL +++ +L E F + SA +V D+ + RSRGFG+V S + A+
Sbjct: 301 SEKTATLWVGNLGWAVDDKALYEEFENCEGIVSARVVTDKDSRRSRGFGYVDFTSPDAAE 360
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK--IYAGNLGWG 226
+A +G+ + GR ++++F P G + G V SP ++ GNL +
Sbjct: 361 KAYNEKNGAHLQGREMRLDFASKPAEGNDPTTRAAERARKHGDVISPESDTLFVGNLSFN 420
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
T + + + F + S ++ ++ +GR +GF +VTF + ED ++A + +NG
Sbjct: 421 ATEESVSEFFNSVAAVQSLRIPTDQESGRPKGFAYVTFNSVEDAKTAFNQLNG 473
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGNL ++ T S++E F V S I D+ + R +GF +VT SVE+AK
Sbjct: 406 SPESDTLFVGNLSFNATEESVSEFFNSVAAVQSLRIPTDQESGRPKGFAYVTFNSVEDAK 465
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
A +GS + GR V+++F + PR
Sbjct: 466 TAFNQLNGSNLDGRPVRLDFAK-PR 489
>gi|226499830|ref|NP_001140942.1| uncharacterized protein LOC100273020 [Zea mays]
gi|194701856|gb|ACF85012.1| unknown [Zea mays]
Length = 473
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 103/196 (52%), Gaps = 5/196 (2%)
Query: 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR 148
++ + EEE ++ K ++D + L+VGNL +++ L F G ++ I+ +R
Sbjct: 201 KKRKAEEEPATNAKKSKTESADNSPNLFVGNLSWNVDEEWLRREFESFGELSGVRIMTER 260
Query: 149 VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
T RSRGFG+V AK A +++ GRT+ +++ + PR A K Q
Sbjct: 261 ETGRSRGFGYVEYADASSAKAAYEAKKDTELDGRTINLDYAK-PRDANSQAPREKAQTRA 319
Query: 209 QGFVD--SP--HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
+ F D SP + ++ GNL +G+ +R+ F+GQ + ++ + TGR +G+G+V F
Sbjct: 320 RSFGDQTSPESNTLFVGNLVFGVDENAVREVFEGQGQIQGVRLPTDAETGRPKGYGYVEF 379
Query: 265 ETAEDLQSALDAMNGV 280
+ ++ + AL+ + G
Sbjct: 380 SSVDEARQALNELQGT 395
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGNL + + +++ EVF G + + D T R +G+G+V SV+EA+
Sbjct: 327 SPESNTLFVGNLVFGVDENAVREVFEGQGQIQGVRLPTDAETGRPKGYGYVEFSSVDEAR 386
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR-GGER 197
+A+ G+ IGGR ++++F PR GER
Sbjct: 387 QALNELQGTDIGGRAIRLDF-STPRPQGER 415
>gi|400597074|gb|EJP64818.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 769
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 99/182 (54%), Gaps = 13/182 (7%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
PK A ++E L+V +LP ++T+ SLAE F+E V A +V D+ T SRGFGFVT+
Sbjct: 33 PKKARTEERRSLFVRSLPPNVTNESLAEFFSEYFPVKHATVVIDQQTKESRGFGFVTLAD 92
Query: 164 VEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMG--PKLQNSYQGFVDSPHKIYAG 221
++AK+A +FD + RT++V E PR + A G P+ + F +P K+
Sbjct: 93 ADDAKQAQIVFDKKRWEDRTIRVEVAE-PRQRKEATEGAQPRQKPGKPEFEPTP-KLIVR 150
Query: 222 NLGWGL-TSQGLRDAFQGQPGLLSAKVIFE---RYTGRSRGFGFVTFETAEDLQSALDAM 277
NL W + S+ L F+ KV F + G+ +GFGFVT ++ + AL+ +
Sbjct: 151 NLPWSIRNSEQLGHLFRS-----YGKVKFADLPKNKGKLKGFGFVTLRGKKNAEKALEGI 205
Query: 278 NG 279
NG
Sbjct: 206 NG 207
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+SD + ++V NLP++ L F+ G V A +V D+ TDR G FV E+A
Sbjct: 314 SSDNSCTIFVRNLPFTTNDEHLKSFFSSFGNVRYARVVMDKATDRPAGTAFVCFYQEEDA 373
Query: 168 KEAIR 172
K I+
Sbjct: 374 KTCIK 378
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSS-SLAEVFAEAGTVASAEIVYD 147
++ +E E + ++P + +L V NLP+S+ +S L +F G V A++ +
Sbjct: 121 RQRKEATEGAQPRQKPGKPEFEPTPKLIVRNLPWSIRNSEQLGHLFRSYGKVKFADLPKN 180
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
+ + +GFGFVT+ + A++A+ +G +I GRT+ V++
Sbjct: 181 K--GKLKGFGFVTLRGKKNAEKALEGINGKEIDGRTLAVDW 219
>gi|405117835|gb|AFR92610.1| single-stranded DNA binding protein [Cryptococcus neoformans var.
grubii H99]
Length = 444
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 7/167 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L +++ + L F G V SA +V+DR + +SRGFG+V + + +AI
Sbjct: 198 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLGSSAKAIEK- 256
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP--HKIYAGNLGWGLTSQGL 232
DGS+I GR ++VN+ + E A ++ N Q SP ++ G+L + +T +
Sbjct: 257 DGSEIDGRAIRVNYATQRKPNEAAEKRARVFNDKQ----SPPAETLWIGSLSFSVTEDQV 312
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+AF + S ++ +R TG +GFG+V F + +D +AL AMNG
Sbjct: 313 YEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDATAALKAMNG 359
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A L++G+L +S+T + E F + G V S + DR T +GFG+V SV++A A+
Sbjct: 295 AETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDATAAL 354
Query: 172 RLFDGSQIGGRTVKVNF 188
+ +G++I GR ++V+F
Sbjct: 355 KAMNGAEIAGRAIRVDF 371
>gi|242082447|ref|XP_002445992.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
gi|241942342|gb|EES15487.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
Length = 266
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEI-VYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
RL N+P+ T+ + +F G+V E+ +Y ++RG FVTMGS E+A A+
Sbjct: 73 RLVAQNIPWDSTADEMRALFQTHGSVVGVELSMYS--ASKNRGLAFVTMGSEEDALAALT 130
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPK----LQNSYQGFVDSPHKIYAGNLGWGLT 228
+ + + R +KV+F PR + PK + N + ++ ++ GNL W +
Sbjct: 131 HLNSTILNDRKIKVDFAR-PRKKQ-----PKQPVVVSNPMEKYI-----VFVGNLTWRVR 179
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTG-RSRGFGFVTFETAEDLQSALDAMNGVV 281
++ LR+ F PG++SA+VIF T RS G+ FV+F + E ++A+ A NG +
Sbjct: 180 NRHLRELFASAPGVISAEVIFHTTTPRRSAGYAFVSFSSKETAEAAISAFNGKI 233
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR-SRGFGFVTMGSVEEAKEAIRL 173
++VGNL + + + L E+FA A V SAE+++ T R S G+ FV+ S E A+ AI
Sbjct: 169 VFVGNLTWRVRNRHLRELFASAPGVISAEVIFHTTTPRRSAGYAFVSFSSKETAEAAISA 228
Query: 174 FDGSQIGGRTVKV 186
F+G + GR + V
Sbjct: 229 FNGKILMGRPINV 241
>gi|194696360|gb|ACF82264.1| unknown [Zea mays]
gi|414869196|tpg|DAA47753.1| TPA: ribonucleoprotein [Zea mays]
Length = 275
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEI-VYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
RL N+P+ T+ + +F G+V E+ +Y +++RG FVTMGS EEA A+
Sbjct: 72 RLVAQNIPWDCTADEMRALFESHGSVVGVELSMYS--ANKNRGLAFVTMGSEEEALAALT 129
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPK----LQNSYQGFVDSPHKIYAGNLGWGLT 228
+ + + R +KV+F PR + PK + + + +V ++ GNL W +
Sbjct: 130 HLNSTILNDRKIKVDFAR-PRKKQ-----PKQPAVVSDDTEKYV-----VFVGNLTWRVR 178
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTG-RSRGFGFVTFETAEDLQSALDAMNGVV 281
++ LR+ F PG++SA+VIF T RS G+ FV+F + E +A+ A NG +
Sbjct: 179 NRHLRELFASAPGVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKI 232
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 99 EEEEEPKVAASD-EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR-SRGF 156
++ ++P V + D E ++VGNL + + + L E+FA A V SAE+++ T R S G+
Sbjct: 151 KQPKQPAVVSDDTEKYVVFVGNLTWRVRNRHLRELFASAPGVVSAEVIFHTTTPRRSAGY 210
Query: 157 GFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
FV+ S E A AI F+G + GR + V F
Sbjct: 211 AFVSFSSKESAGAAISAFNGKILMGRPINVMF 242
>gi|326503644|dbj|BAJ86328.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 285
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 14/167 (8%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVTMGSVEEAKEAIR 172
+L+VGN+P++ +++ ++FAE G V E++ ++ D R RGF FVTM + EEA +
Sbjct: 80 KLFVGNMPFTFSAAETEKLFAECGVVKDVEVI--KMKDGRKRGFAFVTMATAEEAAAVVE 137
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
FDG I GR +KV F + R P +S V + +K+Y NL W S L
Sbjct: 138 KFDGHDINGRVIKVEFSKSFR-------KPAPPSSPDTIV-AKYKLYVSNLAWKARSADL 189
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ F Q +SA ++F+ +S G+GFV+F T E+ ++AL +NG
Sbjct: 190 KEFFS-QFNPVSANIVFD--DRKSAGYGFVSFGTKEEAEAALSELNG 233
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NL + S+ L E F++ V SA IV+D +S G+GFV+ G+ EEA+ A+
Sbjct: 174 KLYVSNLAWKARSADLKEFFSQFNPV-SANIVFD--DRKSAGYGFVSFGTKEEAEAALSE 230
Query: 174 FDGSQIGGRTVKVNFPE 190
+G ++ R V + + E
Sbjct: 231 LNGKELMERPVILRWRE 247
>gi|390594976|gb|EIN04384.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 611
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 95/188 (50%), Gaps = 20/188 (10%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
E+EEE K ++VG L +++ LA FAE G V SA + DR T +SRGFG
Sbjct: 336 AEQEEESKT--------IFVGRLSWNVDDDQLASEFAECGEVVSARVNIDRNTGKSRGFG 387
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDS-- 214
V ++AI +G +I GR V V+ P + + +R +N + F DS
Sbjct: 388 HVEFADASSVQKAIDTMNGKEIDGRPVNVDRAPGLNKNQQR-------ENRAKAFGDSTS 440
Query: 215 -PHKI-YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
P + + GNL W T + +AF + S ++ +R +GR +GFG+V F + ++
Sbjct: 441 APSSVLFVGNLSWDATEDAVWEAFGEHGEVKSVRLPTDRESGRPKGFGYVEFVDVDAAKA 500
Query: 273 ALDAMNGV 280
A +A++G
Sbjct: 501 AFEALSGT 508
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VGNL + T ++ E F E G V S + DR + R +GFG+V V+ AK A
Sbjct: 446 LFVGNLSWDATEDAVWEAFGEHGEVKSVRLPTDRESGRPKGFGYVEFVDVDAAKAAFEAL 505
Query: 175 DGSQIGGRTVKVNFPEVPR 193
G++IGGR++++++ + PR
Sbjct: 506 SGTEIGGRSIRLDYSQ-PR 523
>gi|349580919|dbj|GAA26078.1| K7_Pub1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 453
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 84 EPETEQE-----EEEEEEAVEEEEEPKVAASDEAA--------RLYVGNLPYSMTSSSLA 130
+P +EQ E+ E + E +P V ++ LYVGNL ++T L
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 131 EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
+ F G +A+ +I+ D+ +++ + FV +A A++ +G QI VK+N+
Sbjct: 93 QYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW-- 149
Query: 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 250
Q S Q D ++ G+L + + LR+AF+ P LS V+++
Sbjct: 150 ------------AFQ-SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 196
Query: 251 RYTGRSRGFGFVTFETAEDLQSALDAMNG 279
TG SRG+GFV+F + +D Q+A+D+M G
Sbjct: 197 MQTGSSRGYGFVSFTSQDDAQNAMDSMQG 225
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++SD+ L+VG+L ++ +L F + + S +++D T SRG+GFV+ S ++
Sbjct: 156 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 215
Query: 167 AKEAIRLFDGSQIGGRTVKVNF 188
A+ A+ G + GR +++N+
Sbjct: 216 AQNAMDSMQGQDLNGRPLRINW 237
>gi|323335711|gb|EGA76992.1| Pub1p [Saccharomyces cerevisiae Vin13]
Length = 453
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 84 EPETEQE-----EEEEEEAVEEEEEPKVAASDEAA--------RLYVGNLPYSMTSSSLA 130
+P +EQ E+ E + E +P V ++ LYVGNL ++T L
Sbjct: 33 DPSSEQSXAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 131 EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
+ F G +A+ +I+ D+ +++ + FV +A A++ +G QI VK+N+
Sbjct: 93 QYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW-- 149
Query: 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 250
Q S Q D ++ G+L + + LR+AF+ P LS V+++
Sbjct: 150 ------------AFQ-SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 196
Query: 251 RYTGRSRGFGFVTFETAEDLQSALDAMNG 279
TG SRG+GFV+F + +D Q+A+D+M G
Sbjct: 197 MQTGSSRGYGFVSFTSQDDAQNAMDSMQG 225
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++SD+ L+VG+L ++ +L F + + S +++D T SRG+GFV+ S ++
Sbjct: 156 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 215
Query: 167 AKEAIRLFDGSQIGGRTVKVNF 188
A+ A+ G + GR +++N+
Sbjct: 216 AQNAMDSMQGQDLNGRPLRINW 237
>gi|365763380|gb|EHN04909.1| Pub1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 453
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 84 EPETEQE-----EEEEEEAVEEEEEPKVAASDEAA--------RLYVGNLPYSMTSSSLA 130
+P +EQ E+ E + E +P V ++ LYVGNL ++T L
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 131 EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
+ F G +A+ +I+ D+ +++ + FV +A A++ +G QI VK+N+
Sbjct: 93 QYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW-- 149
Query: 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 250
Q S Q D ++ G+L + + LR+AF+ P LS V+++
Sbjct: 150 ------------AFQ-SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 196
Query: 251 RYTGRSRGFGFVTFETAEDLQSALDAMNG 279
TG SRG+GFV+F + +D Q+A+D+M G
Sbjct: 197 MQTGSSRGYGFVSFTSQDDAQNAMDSMQG 225
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++SD+ L+VG+L ++ +L F + + S +++D T SRG+GFV+ S ++
Sbjct: 156 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 215
Query: 167 AKEAIRLFDGSQIGGRTVKVNF 188
A+ A+ G + GR +++N+
Sbjct: 216 AQNAMDSMQGQDLNGRPLRINW 237
>gi|6324312|ref|NP_014382.1| Pub1p [Saccharomyces cerevisiae S288c]
gi|308153665|sp|P32588.4|PUB1_YEAST RecName: Full=Nuclear and cytoplasmic polyadenylated RNA-binding
protein PUB1; AltName: Full=ARS consensus-binding
protein ACBP-60; AltName: Full=Poly uridylate-binding
protein; Short=Poly(U)-binding protein
gi|1301841|emb|CAA95877.1| PUB1 [Saccharomyces cerevisiae]
gi|285814634|tpg|DAA10528.1| TPA: Pub1p [Saccharomyces cerevisiae S288c]
gi|392296972|gb|EIW08073.1| Pub1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 453
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 84 EPETEQE-----EEEEEEAVEEEEEPKVAASDEAA--------RLYVGNLPYSMTSSSLA 130
+P +EQ E+ E + E +P V ++ LYVGNL ++T L
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 131 EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
+ F G +A+ +I+ D+ +++ + FV +A A++ +G QI VK+N+
Sbjct: 93 QYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW-- 149
Query: 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 250
Q S Q D ++ G+L + + LR+AF+ P LS V+++
Sbjct: 150 ------------AFQ-SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 196
Query: 251 RYTGRSRGFGFVTFETAEDLQSALDAMNG 279
TG SRG+GFV+F + +D Q+A+D+M G
Sbjct: 197 MQTGSSRGYGFVSFTSQDDAQNAMDSMQG 225
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++SD+ L+VG+L ++ +L F + + S +++D T SRG+GFV+ S ++
Sbjct: 156 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 215
Query: 167 AKEAIRLFDGSQIGGRTVKVNF 188
A+ A+ G + GR +++N+
Sbjct: 216 AQNAMDSMQGQDLNGRPLRINW 237
>gi|295646|gb|AAC37348.1| RNA-binding protein [Saccharomyces cerevisiae]
gi|311124|gb|AAC37364.1| poly(A)-binding protein [Saccharomyces cerevisiae]
gi|151944515|gb|EDN62793.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|190409011|gb|EDV12276.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
gi|207341619|gb|EDZ69624.1| YNL016Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256274171|gb|EEU09080.1| Pub1p [Saccharomyces cerevisiae JAY291]
gi|259148933|emb|CAY82177.1| Pub1p [Saccharomyces cerevisiae EC1118]
gi|323346726|gb|EGA81007.1| Pub1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352444|gb|EGA84945.1| Pub1p [Saccharomyces cerevisiae VL3]
Length = 453
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 84 EPETEQE-----EEEEEEAVEEEEEPKVAASDEAA--------RLYVGNLPYSMTSSSLA 130
+P +EQ E+ E + E +P V ++ LYVGNL ++T L
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 131 EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
+ F G +A+ +I+ D+ +++ + FV +A A++ +G QI VK+N+
Sbjct: 93 QYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW-- 149
Query: 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 250
Q S Q D ++ G+L + + LR+AF+ P LS V+++
Sbjct: 150 ------------AFQ-SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 196
Query: 251 RYTGRSRGFGFVTFETAEDLQSALDAMNG 279
TG SRG+GFV+F + +D Q+A+D+M G
Sbjct: 197 MQTGSSRGYGFVSFTSQDDAQNAMDSMQG 225
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++SD+ L+VG+L ++ +L F + + S +++D T SRG+GFV+ S ++
Sbjct: 156 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 215
Query: 167 AKEAIRLFDGSQIGGRTVKVNF 188
A+ A+ G + GR +++N+
Sbjct: 216 AQNAMDSMQGQDLNGRPLRINW 237
>gi|323303187|gb|EGA56986.1| Pub1p [Saccharomyces cerevisiae FostersB]
Length = 433
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 84 EPETEQE-----EEEEEEAVEEEEEPKVAASDEAA--------RLYVGNLPYSMTSSSLA 130
+P +EQ E+ E + E +P V ++ LYVGNL ++T L
Sbjct: 34 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 93
Query: 131 EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
+ F G +A+ +I+ D+ +++ + FV +A A++ +G QI VK+N+
Sbjct: 94 QYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW-- 150
Query: 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 250
Q S Q D ++ G+L + + LR+AF+ P LS V+++
Sbjct: 151 ------------AFQ-SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 197
Query: 251 RYTGRSRGFGFVTFETAEDLQSALDAMNG 279
TG SRG+GFV+F + +D Q+A+D+M G
Sbjct: 198 MQTGSSRGYGFVSFTSQDDAQNAMDSMQG 226
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++SD+ L+VG+L ++ +L F + + S +++D T SRG+GFV+ S ++
Sbjct: 157 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 216
Query: 167 AKEAIRLFDGSQIGGRTVKVNF 188
A+ A+ G + GR +++N+
Sbjct: 217 AQNAMDSMQGQDLNGRPLRINW 238
>gi|172438|gb|AAA02808.1| RNA-binding protein [Saccharomyces cerevisiae]
Length = 429
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 84 EPETEQE-----EEEEEEAVEEEEEPKVAASDEAA--------RLYVGNLPYSMTSSSLA 130
+P +EQ E+ E + E +P V ++ LYVGNL ++T L
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 131 EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
+ F G +A+ +I+ D+ +++ + FV +A A++ +G QI VK+N+
Sbjct: 93 QYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW-- 149
Query: 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 250
Q S Q D ++ G+L + + LR+AF+ P LS V+++
Sbjct: 150 ------------AFQ-SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 196
Query: 251 RYTGRSRGFGFVTFETAEDLQSALDAMNG 279
TG SRG+GFV+F + +D Q+A+D+M G
Sbjct: 197 MQTGSSRGYGFVSFTSQDDAQNAMDSMQG 225
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++SD+ L+VG+L ++ +L F + + S +++D T SRG+GFV+ S ++
Sbjct: 156 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 215
Query: 167 AKEAIRLFDGSQIGGRTVKVNF 188
A+ A+ G + GR +++N+
Sbjct: 216 AQNAMDSMQGQDLNGRPLRINW 237
>gi|326496905|dbj|BAJ98479.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 95/167 (56%), Gaps = 14/167 (8%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVTMGSVEEAKEAIR 172
+L+VGN+P++ +++ ++FAE G V E++ ++ D R RGF FVTM + EEA +
Sbjct: 61 KLFVGNMPFTFSAAETEKLFAECGVVKDVEVI--KMKDGRKRGFAFVTMATAEEAAAVVE 118
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
FDG I GR +KV F ++ P +S V + +K+Y NL W S L
Sbjct: 119 KFDGHDINGRVIKVEF-------SKSFRKPAPPSSPDTIV-AKYKLYVSNLAWKARSADL 170
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ F Q +SA ++F+ +S G+GFV+F T E+ ++AL +NG
Sbjct: 171 KEFFS-QFNPVSANIVFDDR--KSAGYGFVSFGTKEEAEAALSELNG 214
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NL + S+ L E F++ V SA IV+D +S G+GFV+ G+ EEA+ A+
Sbjct: 155 KLYVSNLAWKARSADLKEFFSQFNPV-SANIVFD--DRKSAGYGFVSFGTKEEAEAALSE 211
Query: 174 FDGSQIGGRTVKVNFPE 190
+G ++ R V + + E
Sbjct: 212 LNGKELMERPVILRWRE 228
>gi|406700097|gb|EKD03282.1| hypothetical protein A1Q2_02392 [Trichosporon asahii var. asahii
CBS 8904]
Length = 387
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 13/169 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L +++ + LA FA G V SA IV DR T RSRGFG+V V+ A +AI F
Sbjct: 206 VFVGGLSWNIDNDWLASEFASCGEVVSARIVLDRDTQRSRGFGYVEFADVDSAIKAIE-F 264
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD--SP--HKIYAGNLGWGLTSQ 230
+G ++ GR V+VNF A P + F D SP ++ G+L + T
Sbjct: 265 EGKELDGRAVRVNFAN--------ARKPDADKRAKVFNDKRSPPADTLWIGSLPFDTTED 316
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + F + S ++ +R TG ++GFG+VTF +AL+A+NG
Sbjct: 317 HIYETFGEYGDVQSVRLPTDRETGAAKGFGYVTFGDVAQATAALEALNG 365
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A L++G+LP+ T + E F E G V S + DR T ++GFG+VT G V +A A+
Sbjct: 301 ADTLWIGSLPFDTTEDHIYETFGEYGDVQSVRLPTDRETGAAKGFGYVTFGDVAQATAAL 360
Query: 172 RLFDGSQIGGRTVKVNF-PEVPRGGER 197
+GS+ G R ++++F P P G R
Sbjct: 361 EALNGSEFGSRRIRIDFAPPKPDNGRR 387
>gi|449469386|ref|XP_004152401.1| PREDICTED: polyadenylate-binding protein RBP47B'-like [Cucumis
sativus]
Length = 422
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y + S L FA G V S +I+ +++T + G+GFV S A+
Sbjct: 17 EEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAER 76
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ G +T ++N+ G R GP+ H I+ G+L +
Sbjct: 77 ILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPE------------HSIFVGDLAPDV 124
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F+ Q P + AKV+ + TGRS+G+GFV F + A+ MNGV
Sbjct: 125 TDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGV 178
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 26/184 (14%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A+ +V A++V D T RS+G+GFV E A+
Sbjct: 115 IFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSE 174
Query: 174 FDGSQIGGRTVKVN--FPEVPRG-GERAAMG-------------PKLQNSYQGFVDSPHK 217
+G R ++++ P+ G ++ ++G P L Y +
Sbjct: 175 MNGVYCSTRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDA---NNTT 231
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
I+ GNL +T + L+ F L ++ + + +G GFV F T + A+ M
Sbjct: 232 IFVGNLDPNITEEELKQTF-----LQFGEIAYVKIPA-GKGCGFVQFGTRASAEEAIQKM 285
Query: 278 NGVV 281
G +
Sbjct: 286 QGKI 289
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL ++T L + F + G +A +I +G GFV G+ A+EAI+
Sbjct: 232 IFVGNLDPNITEEELKQTFLQFGEIAYVKI------PAGKGCGFVQFGTRASAEEAIQKM 285
Query: 175 DGSQIGGRTVKVNFPEVP 192
G IG + V+ ++ P
Sbjct: 286 QGKIIGQQVVRTSWGRNP 303
>gi|397642327|gb|EJK75167.1| hypothetical protein THAOC_03118, partial [Thalassiosira oceanica]
Length = 452
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 96/177 (54%), Gaps = 15/177 (8%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY+GNL YS L VF G V + +R T R RGFGFVT+ + + A++AI
Sbjct: 20 KLYIGNLDYSTDEPQLRSVFGAFGAVTDVFLPMERGTSRPRGFGFVTLSTRQAAEDAIAK 79
Query: 174 FDGSQIGGRTVKVNFPEVPRG---GER----AAMGPKLQNSY--QGFVDSPHKIYAGNLG 224
D SQ+ GRT++VN PRG G R GP ++ QG D K+Y GNL
Sbjct: 80 MDQSQLDGRTIRVN-ESRPRGEGPGARRSNEPGTGPGGYGAFNPQGREDV--KLYVGNLS 136
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVI-FERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ + +R F+ Q G +S + +R TGR RGF FVT A++ ++A + +NG+
Sbjct: 137 FDTNEEAVRSMFE-QYGTVSDCFLPSDRDTGRPRGFAFVTMP-AKEAETACNKVNGM 191
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +LYVGNL + ++ +F + GTV+ + DR T R RGF FVTM +EA+ A
Sbjct: 126 EDVKLYVGNLSFDTNEEAVRSMFEQYGTVSDCFLPSDRDTGRPRGFAFVTM-PAKEAETA 184
Query: 171 IRLFDGSQIGGRTVKVN 187
+G ++ GRTV+VN
Sbjct: 185 CNKVNGMELDGRTVRVN 201
>gi|410083501|ref|XP_003959328.1| hypothetical protein KAFR_0J01260 [Kazachstania africana CBS 2517]
gi|372465919|emb|CCF60193.1| hypothetical protein KAFR_0J01260 [Kazachstania africana CBS 2517]
Length = 365
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 15/165 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+GNL S+ +L + F AG + +++ D+ + + F+ + +A A++
Sbjct: 33 LYIGNLDKSINEDALKQYFQVAGQIVDVKVMVDKKNNHV-NYAFIEYSTNHDANVALQTL 91
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G QI + +K+N+ Q+ D+ ++ G+L + L +
Sbjct: 92 NGIQIENKNIKINWA--------------FQSQTNLNDDTSFNLFIGDLNVNVDDTTLAN 137
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF+ PG L A V+++ T RSRG+GFV+F+T E+ Q+A+D M G
Sbjct: 138 AFKSCPGFLQAHVMWDMQTSRSRGYGFVSFDTHENAQAAMDQMQG 182
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + L++G+L ++ ++LA F A +++D T RSRG+GFV+ + E A+
Sbjct: 116 DTSFNLFIGDLNVNVDDTTLANAFKSCPGFLQAHVMWDMQTSRSRGYGFVSFDTHENAQA 175
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A+ G +I GR +++N+
Sbjct: 176 AMDQMQGHEINGRAIRINW 194
>gi|356521983|ref|XP_003529629.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 397
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 97/182 (53%), Gaps = 17/182 (9%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P+ ++DE L++G+L Y M + L A G VAS +++ ++ T +S G+GF+ S
Sbjct: 52 PQPTSADEVRTLWIGDLQYWMDENYLYTCLAHTGEVASVKVIRNKQTSQSEGYGFIEFTS 111
Query: 164 VEEAKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYA 220
A+ ++ ++G+ + GG+ ++N+ + G R DSP H I+
Sbjct: 112 RAGAERVLQTYNGTIMPNGGQNFRLNWATLSAGERRHD-------------DSPDHTIFV 158
Query: 221 GNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T L++ F+ + P + AKV+ +R TGR++G+GFV F + A+ M G
Sbjct: 159 GDLAADVTDYLLQETFRARYPSIKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQG 218
Query: 280 VV 281
V+
Sbjct: 219 VL 220
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 26/179 (14%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A ++ A++V DR+T R++G+GFV G E A+
Sbjct: 156 IFVGDLAADVTDYLLQETFRARYPSIKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTE 215
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH-----------KIYAGN 222
G R +++ G + P Q+ + +P I+ GN
Sbjct: 216 MQGVLCSTRPMRI--------GPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGN 267
Query: 223 LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L +T LR F L+ K+ + GFV F + AL +NG +
Sbjct: 268 LDPNVTDDHLRQVFGHYGELVHVKIP------AGKRCGFVQFADRSCAEEALRVLNGTL 320
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 81 SQDEPETEQEEE---EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAG 137
S P T+ + + + + + E +P ++VGNL ++T L +VF G
Sbjct: 232 SNKNPSTQSQPKASYQNPQGAQNEHDPNNTT------IFVGNLDPNVTDDHLRQVFGHYG 285
Query: 138 TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192
E+V+ ++ R GFV A+EA+R+ +G+ +GG+ V++++ P
Sbjct: 286 -----ELVHVKIPAGKR-CGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSP 334
>gi|242033859|ref|XP_002464324.1| hypothetical protein SORBIDRAFT_01g016170 [Sorghum bicolor]
gi|241918178|gb|EER91322.1| hypothetical protein SORBIDRAFT_01g016170 [Sorghum bicolor]
Length = 409
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 95/173 (54%), Gaps = 15/173 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
DEA L++G+L Y M + L F++AG V S +I+ ++ T + G+GF+ G+ A++
Sbjct: 69 DEARTLWIGDLQYWMDENYLYSCFSQAGEVISVKIIRNKQTGQPEGYGFIEFGNHALAEQ 128
Query: 170 AIRLFDGSQIG--GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G + + K+N+ G +R G S + I+ G+L +
Sbjct: 129 VLQNYNGQMMPNVNQPFKLNWATSGAGEKRGDDG------------SDYTIFVGDLASDV 176
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
T L+D F+ + P + SAKV+F+R TGRS+G+GFV F ++ A+ MNG
Sbjct: 177 TDFILQDTFKSRYPSVKSAKVVFDRTTGRSKGYGFVKFADLDEQTRAMTEMNG 229
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L + F + +V SA++V+DR T RS+G+GFV ++E A+
Sbjct: 167 IFVGDLASDVTDFILQDTFKSRYPSVKSAKVVFDRTTGRSKGYGFVKFADLDEQTRAMTE 226
Query: 174 FDGSQIGGRTVKVNFPEVPR--GGERAAMGPKLQNSYQGFVDS-PHK--IYAGNLGWGLT 228
+G R +++ + GG+ QN+ DS P+ ++ G L +T
Sbjct: 227 MNGQYCSSRPMRLGPASNKKNTGGQPQPSSTIYQNTQGTDSDSDPNNTTVFVGGLDPSVT 286
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L+ F LL K+ + GFV + + A+ +NG
Sbjct: 287 DELLKQTFSPYGELLYVKIPVGKRC------GFVQYSNRASAEEAIRMLNG 331
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L S+T L + F+ G E++Y ++ R GFV + A+EAIR+
Sbjct: 276 VFVGGLDPSVTDELLKQTFSPYG-----ELLYVKIPVGKR-CGFVQYSNRASAEEAIRML 329
Query: 175 DGSQIGGRTVKVNFPEVP 192
+GSQ+GG+++++++ P
Sbjct: 330 NGSQLGGQSIRLSWGRSP 347
>gi|401838326|gb|EJT42016.1| PUB1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 459
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 16/165 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL ++T L + F G +A+ +I+ D+ +++ + FV +A A++
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTL 135
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G QI VK+N+ Q S Q D ++ G+L + + LR+
Sbjct: 136 NGKQIENNIVKINW--------------AFQ-SQQSSSDDTFNLFVGDLNVNVDDETLRN 180
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF+ P LS V+++ TG SRG+GFV+F + +D Q+A+D M G
Sbjct: 181 AFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQTAMDTMQG 225
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++SD+ L+VG+L ++ +L F + + S +++D T SRG+GFV+ S ++
Sbjct: 156 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 215
Query: 167 AKEAIRLFDGSQIGGRTVKVNF 188
A+ A+ G + GR +++N+
Sbjct: 216 AQTAMDTMQGQDLNGRPLRINW 237
>gi|365758602|gb|EHN00436.1| Pub1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 455
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 16/165 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL ++T L + F G +A+ +I+ D+ +++ + FV +A A++
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTL 135
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G QI VK+N+ Q S Q D ++ G+L + + LR+
Sbjct: 136 NGKQIENNIVKINW--------------AFQ-SQQSSSDDTFNLFVGDLNVNVDDETLRN 180
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF+ P LS V+++ TG SRG+GFV+F + +D Q+A+D M G
Sbjct: 181 AFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQTAMDTMQG 225
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++SD+ L+VG+L ++ +L F + + S +++D T SRG+GFV+ S ++
Sbjct: 156 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 215
Query: 167 AKEAIRLFDGSQIGGRTVKVNF 188
A+ A+ G + GR +++N+
Sbjct: 216 AQTAMDTMQGQDLNGRPLRINW 237
>gi|169861389|ref|XP_001837329.1| single-stranded DNA binding protein [Coprinopsis cinerea
okayama7#130]
gi|116502051|gb|EAU84946.1| single-stranded DNA binding protein [Coprinopsis cinerea
okayama7#130]
Length = 569
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 17/202 (8%)
Query: 83 DEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASA 142
DEP T++ + E A P + ++ ++VG L +++ + LA FA G + SA
Sbjct: 302 DEPSTKKVKLENGSAA-----PAGGDAQQSKAVFVGQLSWNVDNDWLASEFASCGEIESA 356
Query: 143 EIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGP 202
+ DR T +SRGFG+V +VE A++A+ L +G +I R +KV+ PR + A
Sbjct: 357 TVQMDRNTGKSRGFGYVHFTTVEAAQKALEL-NGKEIDNRPIKVDI-STPRNPDAA---- 410
Query: 203 KLQNSYQGFVD--SP--HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRG 258
Q Q F D SP + ++ GNL + + + F G+ S ++ +R +GR +G
Sbjct: 411 -RQKRAQTFGDVTSPPSNTLFVGNLSFNTSEDSVWSLFNDY-GVKSVRLPTDRESGRPKG 468
Query: 259 FGFVTFETAEDLQSALDAMNGV 280
FG+V FE E + A +A NG
Sbjct: 469 FGYVEFEDVEGAKKAFEANNGA 490
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VGNL ++ + S+ +F + G V S + DR + R +GFG+V VE AK+A
Sbjct: 429 LFVGNLSFNTSEDSVWSLFNDYG-VKSVRLPTDRESGRPKGFGYVEFEDVEGAKKAFEAN 487
Query: 175 DGSQIGGRTVKVNF 188
+G+ + GR +++++
Sbjct: 488 NGADLDGRPIRLDY 501
>gi|320583460|gb|EFW97673.1| nuclear localization sequence binding protein [Ogataea
parapolymorpha DL-1]
Length = 500
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 14/190 (7%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
EEE+E E A L+VG L +++ L E F V SA ++ +R T RSRG+G
Sbjct: 245 AEEEQETPSKKPKEVATLFVGRLAWAVDDQRLLEEFQSLDGVLSARVMTERETGRSRGYG 304
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVD 213
+V S E+A++A+ F G +I GR + ++ P+ P + K Q+ + + D
Sbjct: 305 YVDFESKEQAQKALEQFQGREIEGRPINLDMSTSKPQTP------SQNQKFQDRAKKYGD 358
Query: 214 SPHK----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
+P + ++ GNL + L++ F+ +L ++ + + +GFG+V F + ++
Sbjct: 359 TPSQPSDTLFVGNLSFQADRDTLKEFFEQHGTVLGIRIPTHPESEQPKGFGYVQFGSVDE 418
Query: 270 LQSALDAMNG 279
++AL+A+NG
Sbjct: 419 AKAALEALNG 428
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VGNL + +L E F + GTV I +++ +GFG+V GSV+EAK A+
Sbjct: 367 LFVGNLSFQADRDTLKEFFEQHGTVLGIRIPTHPESEQPKGFGYVQFGSVDEAKAALEAL 426
Query: 175 DGSQIGGRTVKVNF--PEVPRGGER 197
+G I GR V+++F P P GG R
Sbjct: 427 NGEYIAGRPVRLDFSAPRDPNGGSR 451
>gi|300121123|emb|CBK21504.2| unnamed protein product [Blastocystis hominis]
Length = 302
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 5/170 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++ V LP+S S+L + F E G + + ++ +R +SRGFGFVT S A+
Sbjct: 5 KVIVLGLPFSCDDSALYDYFQECGEITDSRVMVNRENKKSRGFGFVTFASEAAFNNALEK 64
Query: 174 FDGSQIGGRTVKV-NFPEVPRGGERAAMG-PKL-QNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+G++ GRT+KV E P+ ++ P+ Q + + F+D+ +KI +L W +
Sbjct: 65 -NGAEFDGRTIKVEKATERPKRDQKENKDRPQHEQAAPKEFIDT-NKIIITSLAWSVNDD 122
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
LR AF L V+ +R +G+SRG G V F T E ++ A++ MNG
Sbjct: 123 SLRQAFSKYGNLEECTVLKDRQSGKSRGRGIVRFATEEAMKKAIEEMNGT 172
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 70 ASFDGFQV-TEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSS 128
A FDG + E + + P+ +Q+E ++ E+ PK + ++ + +L +S+ S
Sbjct: 67 AEFDGRTIKVEKATERPKRDQKENKDR-PQHEQAAPKEFI--DTNKIIITSLAWSVNDDS 123
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
L + F++ G + ++ DR + +SRG G V + E K+AI +G+++ GR + V
Sbjct: 124 LRQAFSKYGNLEECTVLKDRQSGKSRGRGIVRFATEEAMKKAIEEMNGTELEGRAIAV 181
>gi|449540824|gb|EMD31812.1| hypothetical protein CERSUDRAFT_88684 [Ceriporiopsis subvermispora
B]
Length = 292
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 5/177 (2%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P ASD ++VG L +++ + LA+ FAE G V SA + DR T +SRGFG+VT +
Sbjct: 35 PAEEASDATKTIFVGKLSWNVDNDWLAQEFAECGEVVSARVQMDRNTGKSRGFGYVTFAT 94
Query: 164 VEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI-YAGN 222
VE AI +G +I GR V ++ + + ++ A+ K +Y P + + GN
Sbjct: 95 VEAVDAAIAQ-NGKEIDGRAVNID-KSIEK--DKGAVRQKRAEAYGDKASEPSSVLFVGN 150
Query: 223 LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L W T L + F + S +V +R TG+ +GF +V F E + A + G
Sbjct: 151 LSWDATEDTLWETFNEYGDIKSVRVPTDRETGKPKGFAYVEFSDIEASKKAFEGAAG 207
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
AS+ ++ L+VGNL + T +L E F E G + S + DR T + +GF +V +E +
Sbjct: 139 ASEPSSVLFVGNLSWDATEDTLWETFNEYGDIKSVRVPTDRETGKPKGFAYVEFSDIEAS 198
Query: 168 KEAIRLFDGSQIGGRTVKVNF--PEVPRG 194
K+A G+++ GR ++V+F P P G
Sbjct: 199 KKAFEGAAGAEVAGRNIRVDFSQPRDPNG 227
>gi|392569148|gb|EIW62322.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 556
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 11/170 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L +++ + LA+ FAE G V SA + DR T +SRGFG+V + EA EA L
Sbjct: 299 IFVGRLSWNVDNDWLAQEFAECGEVISARVQMDRNTGKSRGFGYVEFATT-EAVEAALLL 357
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLGWGLTSQ 230
+G +I GR V ++ E+ G + + F DS + ++ GNL W T
Sbjct: 358 NGKEIDGRPVNID------KSEQKDKGAAREKRAEKFGDSASEPSAVLFVGNLSWDCTED 411
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ + F + S ++ +R TGR +GFG+V F E + A + ++G
Sbjct: 412 QVWEVFGEHGDVKSVRLPTDRETGRPKGFGYVEFTDIETAKKAFEGLSGT 461
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
++ E++++ A E+ K +AS+ +A L+VGNL + T + EVF E G V S +
Sbjct: 370 DKSEQKDKGAAREKRAEKFGDSASEPSAVLFVGNLSWDCTEDQVWEVFGEHGDVKSVRLP 429
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193
DR T R +GFG+V +E AK+A G+++ GR +++++ + PR
Sbjct: 430 TDRETGRPKGFGYVEFTDIETAKKAFEGLSGTEVAGRPIRLDYSQ-PR 476
>gi|295789540|pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 16/165 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL ++T L + F G +A+ +I+ D+ +++ + FV +A A++
Sbjct: 3 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTL 61
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G QI VK+N+ S Q D ++ G+L + + LR+
Sbjct: 62 NGKQIENNIVKINWAF---------------QSQQSSSDDTFNLFVGDLNVNVDDETLRN 106
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF+ P LS V+++ TG SRG+GFV+F + +D Q+A+D+M G
Sbjct: 107 AFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++SD+ L+VG+L ++ +L F + + S +++D T SRG+GFV+ S ++
Sbjct: 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 141
Query: 167 AKEAIRLFDGSQIGGRTVKVNF 188
A+ A+ G + GR +++N+
Sbjct: 142 AQNAMDSMQGQDLNGRPLRINW 163
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 90/174 (51%), Gaps = 10/174 (5%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SD ++VG L +++ L F G V A + DR T RS+GFG+V+ + E A+
Sbjct: 387 SDANCNIFVGKLSWNVDDEWLKSEFEACGEVVRASVQMDRQTGRSKGFGYVSFSTPEAAE 446
Query: 169 EAIRLFDGSQIGGRTVKVN--FPEVPRGGERAAMGPKLQNSYQGFVDSPHKI-YAGNLGW 225
+AI +G +I GR V VN P+ P RA + V + K+ + GN+ +
Sbjct: 447 KAIAEMNGKEIDGRAVNVNAATPKTPNPAGRA-------KQFGDTVSAESKVLFVGNVSF 499
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + F ++S ++ +R TG+ +GFG+V F + E+ +SA +A+NG
Sbjct: 500 NANEDMLWETFGEHGDIVSVRLPTDRETGQMKGFGYVEFTSVENAKSAFNALNG 553
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGN+ ++ L E F E G + S + DR T + +GFG+V SVE AK
Sbjct: 486 SAESKVLFVGNVSFNANEDMLWETFGEHGDIVSVRLPTDRETGQMKGFGYVEFTSVENAK 545
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
A +G I GR ++++F + PR
Sbjct: 546 SAFNALNGKDIAGRNIRLDFSQ-PR 569
>gi|346322022|gb|EGX91621.1| ribosome biogenesis protein Nop4 [Cordyceps militaris CM01]
Length = 818
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 97/177 (54%), Gaps = 3/177 (1%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
PK A ++E L+V +LP ++T+ SLAE F+E V A +V D+ T SRGFGFVT+
Sbjct: 33 PKKARTEERRSLFVRSLPPNVTNESLAEFFSEYFPVKHATVVVDQQTKESRGFGFVTLAD 92
Query: 164 VEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
++AK+A + D Q GR+++V E + E A + Q + + K+ NL
Sbjct: 93 ADDAKQAQTVLDKKQWEGRSIRVEVAEPRQRKELAEGAERRQKPGKPEFEPTPKLIVRNL 152
Query: 224 GWGL-TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
W + S+ L F+ + A + ++ G+ +GFGFVT ++ ++AL+ +NG
Sbjct: 153 PWSIRNSEQLGHLFRSYGRIKFADLPKDK--GKLKGFGFVTLRGKKNAENALEGVNG 207
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSS-SLAEVFAEAGTVASAEIVYD 147
++ +E E E ++P + +L V NLP+S+ +S L +F G + A++ D
Sbjct: 121 RQRKELAEGAERRQKPGKPEFEPTPKLIVRNLPWSIRNSEQLGHLFRSYGRIKFADLPKD 180
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
+ + +GFGFVT+ + A+ A+ +G +I GRT+ V++
Sbjct: 181 K--GKLKGFGFVTLRGKKNAENALEGVNGKEIDGRTLAVDW 219
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+E + +SD + ++V NLP++ L F+ G + A +V D+ TDR G FV
Sbjct: 306 KEERNNSSDNSTTIFVRNLPFTTNDEKLKSFFSSFGNIRYARVVMDKATDRPAGTAFVCF 365
Query: 162 GSVEEAKEAIR 172
E+AK I+
Sbjct: 366 FEGEDAKACIK 376
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 91/167 (54%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVG+L ++++ + L E+F++ G V S + D +T RS G+ +V S ++A A+ L
Sbjct: 26 VYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDATRALELL 85
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G+ +++ F + P L+ S I+ NL + ++ L D
Sbjct: 86 NFTPVNGKPIRIMF---------SHRDPSLRKS------GAANIFIKNLDKAIDNKALHD 130
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F G+LS KV + +G+S+G+GFV FE E QSA++ +NG++
Sbjct: 131 TFSAFGGILSCKVATDS-SGQSKGYGFVQFEKEESAQSAIEKVNGML 176
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
AA +++ NL ++ + +L + F+ G + S ++ D + +S+G+GFV E A+ AI
Sbjct: 111 AANIFIKNLDKAIDNKALHDTFSAFGGILSCKVATDS-SGQSKGYGFVQFEKEESAQSAI 169
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + + V V P V R + G V + +Y NLG T
Sbjct: 170 EKVNGMLLNDKQVFVG-PFVRR----------QERDLSGGVSKFNNVYVKNLGENTTDDE 218
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L+ F G G +S+ V+ G+S+ FGFV FE A+D A++A+NG
Sbjct: 219 LKKVF-GAYGPISSAVVMRDNEGKSKCFGFVNFELADDAAKAVEALNG 265
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 17/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL + T L +VF G ++SA ++ D +S+ FGFV ++A +A+
Sbjct: 205 VYVKNLGENTTDDELKKVFGAYGPISSAVVMRDN-EGKSKCFGFVNFELADDAAKAVEAL 263
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQN-------SYQGFVDSPHKIYAGNLGWG 226
+G + + V + + ER A + K + YQG +Y NL
Sbjct: 264 NGKKQDEKEWYVGRAQ--KKSEREAELRAKFEQERKSRIEKYQGV-----NLYLKNLDDA 316
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + LR+ F + S KV+ + G+SRG GFV F T E+ A+ MN
Sbjct: 317 VDDEKLRELFAEYGTITSCKVMKDP-QGQSRGSGFVAFSTPEEATRAVTEMN 367
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+ + E E E A E+E + LY+ NL ++ L E+FAE GT+ S +++
Sbjct: 279 QKKSEREAELRAKFEQERKSRIEKYQGVNLYLKNLDDAVDDEKLRELFAEYGTITSCKVM 338
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D +SRG GFV + EEA A+ + +G + + V
Sbjct: 339 KDP-QGQSRGSGFVAFSTPEEATRAVTEMNTKMVGSKPLYV 378
>gi|449513289|ref|XP_004164285.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
RBP47B'-like [Cucumis sativus]
Length = 427
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 15/173 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y + S L FA G V S +I+ +++T + G+GFV S A+
Sbjct: 17 EEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAER 76
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ G +T ++N+ G R GP+ H I+ G+L +
Sbjct: 77 ILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPE------------HSIFVGDLAPDV 124
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
T L++ F+ Q P + AKV+ + TGRS+G+GFV F + A+ MNG
Sbjct: 125 TDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNG 177
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 25/186 (13%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A+ +V A++V D T RS+G+GFV E A+
Sbjct: 115 IFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSE 174
Query: 174 FDGSQIGGRTVKVN--FPEVPRGGERAAMGPKLQNSYQGFVDSPH--------------- 216
+G R ++++ P+ P + K+ N+ + +
Sbjct: 175 MNGXYCSTRPMRISAATPKKPLVFSSNTVXVKVMNNESMYPVPAYTTSVPVLPADYDANN 234
Query: 217 -KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
I+ GNL +T + L+ F L ++ + + +G GFV F T + A+
Sbjct: 235 TTIFVGNLDPNITEEELKQTF-----LQFGEIAYVKIPA-GKGCGFVQFGTRASAEEAIQ 288
Query: 276 AMNGVV 281
M G +
Sbjct: 289 KMQGKI 294
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL ++T L + F + G +A +I +G GFV G+ A+EAI+
Sbjct: 237 IFVGNLDPNITEEELKQTFLQFGEIAYVKI------PAGKGCGFVQFGTRASAEEAIQKM 290
Query: 175 DGSQIGGRTVKVNFPEVP 192
G IG + V+ ++ P
Sbjct: 291 QGKIIGQQVVRTSWGRNP 308
>gi|356563290|ref|XP_003549897.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 402
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 17/182 (9%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P+ ++DE L++G+L Y M + L FA G +AS +++ ++ T +S G+GF+ S
Sbjct: 56 PQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGELASVKVIRNKQTSQSEGYGFIEFTS 115
Query: 164 VEEAKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYA 220
A+ ++ ++G+ + GG+ ++N+ G R DSP H I+
Sbjct: 116 RAGAERVLQTYNGTIMPNGGQNFRLNWATFSAGERRHD-------------DSPDHTIFV 162
Query: 221 GNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T L++ F+ + P AKV+ +R TGR++G+GFV F + A+ M G
Sbjct: 163 GDLAADVTDYLLQETFRARYPSAKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMSEMQG 222
Query: 280 VV 281
V+
Sbjct: 223 VL 224
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 28/180 (15%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A + A++V DR+T R++G+GFV G E A+
Sbjct: 160 IFVGDLAADVTDYLLQETFRARYPSAKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMSE 219
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH-----------KIYAGN 222
G R +++ G + P Q+ + +P I+ GN
Sbjct: 220 MQGVLCSTRPMRI--------GPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGN 271
Query: 223 LGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L +T LR F GQ G L+ K+ + GFV F + AL +NG +
Sbjct: 272 LDPNVTDDHLRQVF-GQYGELVHVKIP------AGKRCGFVQFADRSCAEEALRVLNGTL 324
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 81 SQDEPETEQEEE---EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAG 137
S P T+ + + + + + E +P ++VGNL ++T L +VF + G
Sbjct: 236 SNKNPSTQSQPKASYQNPQGAQNEHDPNNTT------IFVGNLDPNVTDDHLRQVFGQYG 289
Query: 138 TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192
E+V+ ++ R GFV A+EA+R+ +G+ +GG+ V++++ P
Sbjct: 290 -----ELVHVKIPAGKR-CGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSP 338
>gi|359806849|ref|NP_001241058.1| uncharacterized protein LOC100776344 [Glycine max]
gi|255634852|gb|ACU17785.1| unknown [Glycine max]
Length = 340
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 13/178 (7%)
Query: 101 EEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
EE +A++D A R L+V L ++ TS +L F E G + ++YD+VT +SRG+GF+
Sbjct: 54 EEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKVTGKSRGYGFI 113
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
T ++E ++A+R I GR N G +A P L S K+Y
Sbjct: 114 TFKNMESTQQALRA-PSKLIDGRLAVCNLACESLSGTSSA--PDL---------SLRKLY 161
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
G+L +TS+ L + F + V ++R T SRGFGFVT++TAE + A+D +
Sbjct: 162 IGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAIDDL 219
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
K++ L W TS+ LR AFQ + VI+++ TG+SRG+GF+TF+ E Q AL
Sbjct: 67 RKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKVTGKSRGYGFITFKNMESTQQALR 126
Query: 276 AMNGVV 281
A + ++
Sbjct: 127 APSKLI 132
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 14/177 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +Y+ N M L E+F+ G S +++ D T RSRGFGFV G+ EEA++A
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLG 224
+ +G ++ GR + V + + R GE +++ N YQG +Y NL
Sbjct: 248 VSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGV-----NLYVKNLD 302
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
G+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG +
Sbjct: 303 DGIDDDRLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDESIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + + SRG+GFV FET E A+ MNG++
Sbjct: 116 YDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGML 162
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E Y V +Y N G + + LR+
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREL---------EYGAKVMEFTNVYIKNFGEDMDDKRLRE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + TGRSRGFGFV + E+ Q A+ MNG
Sbjct: 210 IFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIVSTKPLYVALAQ--RKEERKAI---LTNQY 382
>gi|359478387|ref|XP_003632115.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Vitis vinifera]
Length = 438
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y + + L FA G V S +I+ +++T + G+GFV S A+
Sbjct: 38 EEVRTLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAER 97
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ G +T ++N+ G R GP+ H I+ G+L +
Sbjct: 98 ILQAYNGTQMPGTEQTFRLNWASFGIGERRPDAGPE------------HSIFVGDLAPDV 145
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F+ Q P + AKV+ + TGR++G+GFV F + A+ MNGV
Sbjct: 146 TDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGV 199
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL ++T L ++F++ G E+VY ++ RG GFV G+ A+EAI+
Sbjct: 255 IFVGNLDPNVTEEELKQIFSQFG-----ELVYVKIP-AGRGCGFVQFGTRTSAEEAIQRM 308
Query: 175 DGSQIGGRTVKVNFPEVP 192
G+ IG V++++ P
Sbjct: 309 QGTVIGQLVVRISWGRSP 326
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A+ +V A++V D T R++G+GFV E A+
Sbjct: 136 IFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTE 195
Query: 174 FDGSQIGGRTVKVN--FPEVPRGGERAAMGPKLQNSYQGFVDSP-------------HKI 218
+G R ++++ P+ G ++ +P I
Sbjct: 196 MNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTI 255
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ GNL +T + L+ F L+ K+ RG GFV F T + A+ M
Sbjct: 256 FVGNLDPNVTEEELKQIFSQFGELVYVKI------PAGRGCGFVQFGTRTSAEEAIQRMQ 309
Query: 279 GVV 281
G V
Sbjct: 310 GTV 312
>gi|358055852|dbj|GAA98197.1| hypothetical protein E5Q_04880 [Mixia osmundae IAM 14324]
Length = 545
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 8/172 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S E ++VG L + +T+ SL E F G + SA +V DR T +SRGFG+V
Sbjct: 282 AGSTEIKNVFVGGLSWGITNESLQEAFESCGEIVSARVVTDRETGKSRGFGYVDFVDAAG 341
Query: 167 AKEAIRLFDGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHK-IYAGNL 223
AK A+ + G+++ GRT+ V+ P PR G A PK Q + + +P + ++ GNL
Sbjct: 342 AKAALEMA-GTELDGRTINVDLSAPRPPRDGPGAT--PKKQ--FNDELSAPSQTVFVGNL 396
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+ T + ++F G+ S +V + TGR +GF +V F + + A+D
Sbjct: 397 SFESTQDAVWESFSDFGGVNSVRVPTDMETGRPKGFAYVEFGDVDSAKKAVD 448
>gi|357128483|ref|XP_003565902.1| PREDICTED: uncharacterized protein LOC100828680 [Brachypodium
distachyon]
Length = 357
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 94/190 (49%), Gaps = 27/190 (14%)
Query: 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR 148
Q+E +EE E+EE AA LYVGNL + + LA++F G V +EI+YDR
Sbjct: 186 QQECDEEYTSEDEEYYGPAAE---GTLYVGNLRHHIDDEYLAQLFENVGIVEFSEILYDR 242
Query: 149 VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR--TVKVNFPEVPRGGERAAMGPKLQN 206
T +SRG+G+VTM +VEEA+ A+ F ++ G+ TV++ P R
Sbjct: 243 ETGQSRGYGYVTMSTVEEAEMAVNTFHRRELYGKLMTVEMRSPHQHR------------- 289
Query: 207 SYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTG--RSRGFGFVTF 264
SP +I+ GNL + L F ++ KV + G RSR FGFVT
Sbjct: 290 -------SPVRIFVGNLPCEVDGSMLNLLFSEHGQVVDTKVAYGYVKGVWRSRRFGFVTM 342
Query: 265 ETAEDLQSAL 274
T E+ A+
Sbjct: 343 ATREESDDAI 352
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD--RSRGFGFVTMGSVEEAKEA 170
R++VGNLP + S L +F+E G V ++ Y V RSR FGFVTM + EE+ +A
Sbjct: 292 VRIFVGNLPCEVDGSMLNLLFSEHGQVVDTKVAYGYVKGVWRSRRFGFVTMATREESDDA 351
Query: 171 IRL 173
I L
Sbjct: 352 IYL 354
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y GNL + + L F+ + ++++++R TG+SRG+G+VT T E+ + A++
Sbjct: 209 LYVGNLRHHIDDEYLAQLFENVGIVEFSEILYDRETGQSRGYGYVTMSTVEEAEMAVNTF 268
Query: 278 N 278
+
Sbjct: 269 H 269
>gi|406997918|gb|EKE15908.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 93
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 55/76 (72%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVG LPYS T SL E F++AG V SA I+ DR++ RS+GFGFV M + E A++AI
Sbjct: 2 AKKLYVGGLPYSTTEESLGEHFSQAGAVESANIITDRMSGRSKGFGFVEMSTEEGAQKAI 61
Query: 172 RLFDGSQIGGRTVKVN 187
+F G + GGRT+ VN
Sbjct: 62 EMFHGKEFGGRTLTVN 77
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K+Y G L + T + L + F + SA +I +R +GRS+GFGFV T E Q A++
Sbjct: 4 KLYVGGLPYSTTEESLGEHFSQAGAVESANIITDRMSGRSKGFGFVEMSTEEGAQKAIEM 63
Query: 277 MNG 279
+G
Sbjct: 64 FHG 66
>gi|225435468|ref|XP_002285479.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Vitis vinifera]
Length = 447
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y + + L FA G V S +I+ +++T + G+GFV S A+
Sbjct: 38 EEVRTLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAER 97
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ G +T ++N+ G R GP+ H I+ G+L +
Sbjct: 98 ILQAYNGTQMPGTEQTFRLNWASFGIGERRPDAGPE------------HSIFVGDLAPDV 145
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F+ Q P + AKV+ + TGR++G+GFV F + A+ MNGV
Sbjct: 146 TDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGV 199
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL ++T L ++F++ G E+VY ++ RG GFV G+ A+EAI+
Sbjct: 255 IFVGNLDPNVTEEELKQIFSQFG-----ELVYVKIP-AGRGCGFVQFGTRTSAEEAIQRM 308
Query: 175 DGSQIGGRTVKVNFPEVP 192
G+ IG V++++ P
Sbjct: 309 QGTVIGQLVVRISWGRSP 326
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A+ +V A++V D T R++G+GFV E A+
Sbjct: 136 IFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTE 195
Query: 174 FDGSQIGGRTVKVN--FPEVPRGGERAAMGPKLQNSYQGFVDSP-------------HKI 218
+G R ++++ P+ G ++ +P I
Sbjct: 196 MNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTI 255
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ GNL +T + L+ F L+ K+ RG GFV F T + A+ M
Sbjct: 256 FVGNLDPNVTEEELKQIFSQFGELVYVKI------PAGRGCGFVQFGTRTSAEEAIQRMQ 309
Query: 279 GVV 281
G V
Sbjct: 310 GTV 312
>gi|297746331|emb|CBI16387.3| unnamed protein product [Vitis vinifera]
Length = 445
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y + + L FA G V S +I+ +++T + G+GFV S A+
Sbjct: 38 EEVRTLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAER 97
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ G +T ++N+ G R GP+ H I+ G+L +
Sbjct: 98 ILQAYNGTQMPGTEQTFRLNWASFGIGERRPDAGPE------------HSIFVGDLAPDV 145
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F+ Q P + AKV+ + TGR++G+GFV F + A+ MNGV
Sbjct: 146 TDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGV 199
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL ++T L ++F++ G E+VY ++ RG GFV G+ A+EAI+
Sbjct: 255 IFVGNLDPNVTEEELKQIFSQFG-----ELVYVKIP-AGRGCGFVQFGTRTSAEEAIQRM 308
Query: 175 DGSQIGGRTVKVNFPEVP 192
G+ IG V++++ P
Sbjct: 309 QGTVIGQLVVRISWGRSP 326
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A+ +V A++V D T R++G+GFV E A+
Sbjct: 136 IFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTE 195
Query: 174 FDGSQIGGRTVKVN--FPEVPRGGERAAMGPKLQNSYQGFVDSP-------------HKI 218
+G R ++++ P+ G ++ +P I
Sbjct: 196 MNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTI 255
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ GNL +T + L+ F L+ K+ RG GFV F T + A+ M
Sbjct: 256 FVGNLDPNVTEEELKQIFSQFGELVYVKI------PAGRGCGFVQFGTRTSAEEAIQRMQ 309
Query: 279 GVV 281
G V
Sbjct: 310 GTV 312
>gi|402078039|gb|EJT73388.1| nuclear localization sequence binding protein [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 499
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 104/197 (52%), Gaps = 6/197 (3%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEI 144
P +++ +E +EA ++ + A SD+ A L+VG+L +++ L E F G V SA +
Sbjct: 225 PSKKRKADEPKEAPTKKSKTDAAESDKPATLFVGSLSWNVDDDMLKEEFKFCGEVVSARV 284
Query: 145 VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKL 204
+ DR T RS+GFG+V S +A++A G+ I GR +KV+F +A K
Sbjct: 285 ITDRETGRSKGFGYVDFASPADAEKAHAEKQGAFIDGRQIKVDFSTGKSNNNDSADRAK- 343
Query: 205 QNSYQGFVDSPHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFV 262
G V SP ++ GNL + + + F + S ++ ++ +GR +GFG+V
Sbjct: 344 ---KFGDVTSPESDTLFVGNLPFDADEDVVSEFFGSVAEIKSLRLPTDQESGRRKGFGYV 400
Query: 263 TFETAEDLQSALDAMNG 279
+F + ED +SA ++G
Sbjct: 401 SFNSVEDAKSAFTQLSG 417
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGNLP+ ++E F + S + D+ + R +GFG+V+ SVE+AK
Sbjct: 350 SPESDTLFVGNLPFDADEDVVSEFFGSVAEIKSLRLPTDQESGRRKGFGYVSFNSVEDAK 409
Query: 169 EAIRLFDGSQIGGRTVKVNF--PEVPR 193
A G I GR ++++ P+ PR
Sbjct: 410 SAFTQLSGQSINGRPCRLDYSTPKPPR 436
>gi|255089439|ref|XP_002506641.1| predicted protein [Micromonas sp. RCC299]
gi|226521914|gb|ACO67899.1| predicted protein [Micromonas sp. RCC299]
Length = 285
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGN+P+S T L +F+ GT+ +I R RSRG+G V +V EA+ AI+
Sbjct: 8 RLYVGNIPWSTTVDELRGIFSGCGTITLVDIPTGR-QGRSRGYGIVEYSNVNEAQVAIQT 66
Query: 174 FDGSQIGGRTVKVNFPEVP-------RGGERAAMGPKLQNSYQGFVDSP----HKIYAGN 222
DG +G R + V + P GG R+ +G D+P + Y GN
Sbjct: 67 LDGHTLGDRNITVREDKAPTKSAPSKSGGNRSTIG-----------DTPAADGCRCYVGN 115
Query: 223 LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L W + L A Q G + + ++ GRS+G+G V FET + SA++ ++
Sbjct: 116 LAWETNEESL-IAHCSQVGTVVQAEVAKQPGGRSKGWGLVDFETPDAANSAINTLH 170
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 84/170 (49%), Gaps = 6/170 (3%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ R YVGNL + SL ++ GTV AE V + RS+G+G V + + A A
Sbjct: 107 DGCRCYVGNLAWETNEESLIAHCSQVGTVVQAE-VAKQPGGRSKGWGLVDFETPDAANSA 165
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
I S + GR++ V GG + GP N+ + S +I NL W TS+
Sbjct: 166 INTLHNSDLQGRSIIVRLERA--GGANKSGGP---NAGRPEASSGLQIVVRNLPWSTTSE 220
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
LR FQ ++ A+ + TGRS+G+G V FET E Q+A+ NGV
Sbjct: 221 DLRQVFQQVGTVIKAEAVCHADTGRSKGWGTVLFETREQAQAAIQGFNGV 270
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++ V NLP+S TS L +VF + GTV AE V T RS+G+G V + E+A+ AI+
Sbjct: 207 QIVVRNLPWSTTSEDLRQVFQQVGTVIKAEAVCHADTGRSKGWGTVLFETREQAQAAIQG 266
Query: 174 FDGSQIGGRTVKVNF 188
F+G ++ R +++
Sbjct: 267 FNGVELEHRPMQIKL 281
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+++Y GN+ W T LR F G G ++ I GRSRG+G V + + Q A+
Sbjct: 7 NRLYVGNIPWSTTVDELRGIFSG-CGTITLVDIPTGRQGRSRGYGIVEYSNVNEAQVAIQ 65
Query: 276 AMNG 279
++G
Sbjct: 66 TLDG 69
>gi|226499642|ref|NP_001147738.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195613392|gb|ACG28526.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414585685|tpg|DAA36256.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 272
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 14/167 (8%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NLP+S + + ++FA+ GTV E++ + R+RGF FVTM + EEA A
Sbjct: 67 KLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKGK-DGRNRGFAFVTMSTAEEAAAAADK 125
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ + GRT+KV F + R G + HK+Y NL W + ++
Sbjct: 126 LNSHDVMGRTIKVEFSKSFRR--------PAPPPPPGTIIERHKLYVSNLPWKARAPNVK 177
Query: 234 DAFQG-QPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F P LSA VIF+ G++ G+GFV+F T E+ ++AL ++G
Sbjct: 178 EFFANFNP--LSANVIFD--NGKAAGYGFVSFGTKEEAEAALTELDG 220
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +LYV NLP+ + ++ E FA + SA +++D ++ G+GFV+ G+ EEA+ A
Sbjct: 158 ERHKLYVSNLPWKARAPNVKEFFANFNPL-SANVIFD--NGKAAGYGFVSFGTKEEAEAA 214
Query: 171 IRLFDGSQIGGRTVKVNFPE 190
+ DG ++ GR V++N+ E
Sbjct: 215 LTELDGKELLGRPVRLNWRE 234
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 16/175 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E+ ++VG L +++ + LA+ F GTV +A + DR + +SRGF +V S EA++A
Sbjct: 108 ESNTVFVGRLSWNVDNDWLAQEFQGCGTVVAARVQMDRNSGKSRGFAYVEFSSPAEAQKA 167
Query: 171 IRLFDGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLG 224
+ +G QI GR V V+ P P +RA Q F DS + ++ GNL
Sbjct: 168 VEEMNGKQIDGREVNVDISQPRQPNPEKRA----------QVFGDSESQPSTTLFVGNLS 217
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
W T GL AF + ++ ++ +G+ +GFG+V F E A +AM G
Sbjct: 218 WNTTEDGLWTAFGEFGDVTHVRLPTDQESGKPKGFGYVEFGDQEGATKAYEAMKG 272
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 72 FDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAE 131
DG +V D +P E+ + + E +P L+VGNL ++ T L
Sbjct: 176 IDGREVNVDIS-QPRQPNPEKRAQVFGDSESQPSTT-------LFVGNLSWNTTEDGLWT 227
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
F E G V + D+ + + +GFG+V G E A +A G + GRT+++++
Sbjct: 228 AFGEFGDVTHVRLPTDQESGKPKGFGYVEFGDQEGATKAYEAMKGKDLDGRTLRLDY 284
>gi|397576490|gb|EJK50286.1| hypothetical protein THAOC_30767 [Thalassiosira oceanica]
Length = 397
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 83/164 (50%), Gaps = 14/164 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
DE A++YVGNL + T+ L F E G V + D +RGFGF+ M S E++ +
Sbjct: 193 DEGAKIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVD-YDGNARGFGFIQM-SDEDSLK 250
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI +G + GRT+ VN +P+G AA PK K+Y GNL WG
Sbjct: 251 AIEGMNGVEFDGRTLNVN-KSLPKGQRPAAAAPKET-----------KLYVGNLSWGTEE 298
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
LR+ F ++ + +R TG+ RGF FVT + L++A
Sbjct: 299 GALRELFGEYGSVIDCYIPTDRETGQHRGFAFVTMGPDDALRAA 342
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+ P AA E +LYVGNL + +L E+F E G+V I DR T + RGF FVTM
Sbjct: 275 QRPAAAAPKET-KLYVGNLSWGTEEGALRELFGEYGSVIDCYIPTDRETGQHRGFAFVTM 333
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
G ++A A DG ++ GR ++VN + P+G +N+Y + D + Y G
Sbjct: 334 GP-DDALRAADETDGYELDGRILRVNEAQ-PKG---------QRNNYNSYNDGGN--YDG 380
Query: 222 NLGW 225
+ W
Sbjct: 381 DDAW 384
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 140 ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA 199
S ++ R T + RGF FV M + ++ + AI + S+I GRT+ V+ +P+ ++ A
Sbjct: 124 GSVDVPLSRETGKCRGFAFVAMTNSDDHEAAIEQLNMSEIAGRTIYVS-ESLPK--DQVA 180
Query: 200 MGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF 259
K + + D KIY GNL + T++ L+ AF+ ++ + + Y G +RGF
Sbjct: 181 E-KKKKFQGRKKRDEGAKIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVD-YDGNARGF 238
Query: 260 GFVTFETAEDLQSALDAMNGV 280
GF+ + ED A++ MNGV
Sbjct: 239 GFIQM-SDEDSLKAIEGMNGV 258
>gi|50286801|ref|XP_445830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525136|emb|CAG58749.1| unnamed protein product [Candida glabrata]
Length = 425
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 99/189 (52%), Gaps = 11/189 (5%)
Query: 96 EAVEEEEEPKVAASD-EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSR 154
E EEE PK A +D E A ++VG L +S+ L + F G V +A ++Y+R TDRSR
Sbjct: 158 EDEEEESSPKKAKTDGEPATVFVGRLSWSIDDEWLKQEFEHIGGVVAARVMYERGTDRSR 217
Query: 155 GFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDS 214
G+G+V A++A++ G +I GR + V+ + + P+ ++ + F D
Sbjct: 218 GYGYVDFEDKSYAEKAVKEMHGKEIDGRPINVDM-----STSKPTVNPR-EDRQKRFGDI 271
Query: 215 PHK----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
P + ++ GNL + + + F ++S ++ T + +GFG+V + + +D
Sbjct: 272 PSEPSDTLFLGNLSFNADRDNIYEIFGKFGEIISVRIPTHPETEQPKGFGYVQYTSIDDA 331
Query: 271 QSALDAMNG 279
+ AL+A+ G
Sbjct: 332 KKALEALQG 340
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 47/80 (58%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S+ + L++GNL ++ ++ E+F + G + S I T++ +GFG+V S+++AK
Sbjct: 273 SEPSDTLFLGNLSFNADRDNIYEIFGKFGEIISVRIPTHPETEQPKGFGYVQYTSIDDAK 332
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
+A+ G I R V++++
Sbjct: 333 KALEALQGEYIDNRPVRLDY 352
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 94/181 (51%), Gaps = 17/181 (9%)
Query: 102 EEPKVAASDEA-ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
+EP + S A A LYVG+L ++T S L ++F++ V S + D T RS G+G+V
Sbjct: 157 DEPNIGPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVN 216
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYA 220
+E+A A+ + + + + G+ +++ + + P ++ S G I+
Sbjct: 217 YTDLEDAARALDVLNFTPLNGKPIRIMY---------SHRDPSIRKSGTG------NIFI 261
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + L D F +LS KV + +G S+G GFV F++ E Q A+D +NG+
Sbjct: 262 KNLDKGIDHKALHDTFSAFGNILSCKVATDA-SGMSKGHGFVQFDSEEAAQKAIDKLNGM 320
Query: 281 V 281
+
Sbjct: 321 L 321
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 42/203 (20%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++ S L ++F++ G V S + D T RS G+G+V + ++ KE ++
Sbjct: 32 LYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDEKEKETIY 91
Query: 175 DGSQI----------------------------GGRTVK--VNFPEVPRGGERAAMGPKL 204
+G + GG K +NF V GGE A +
Sbjct: 92 EGFCVFCLIPSNYAIFFVLGFSYIHKKRRGKERGGELQKRELNFLRV--GGEMAEVQDH- 148
Query: 205 QNSYQGFVDSPH---------KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 255
+ G D P+ +Y G+L +T L D F ++S +V + T R
Sbjct: 149 EGLLSGTNDEPNIGPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHR 208
Query: 256 SRGFGFVTFETAEDLQSALDAMN 278
S G+G+V + ED ALD +N
Sbjct: 209 SLGYGYVNYTDLEDAARALDVLN 231
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + +L + F+ G + S ++ D + S+G GFV S E A++AI
Sbjct: 259 IFIKNLDKGIDHKALHDTFSAFGNILSCKVATD-ASGMSKGHGFVQFDSEEAAQKAIDKL 317
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V P V R ER + K + + ++ N+ G+T + L
Sbjct: 318 NGMLLNDKQVFVG-PFV-RKQERESTINK---------EKFNNVFVKNISEGMTEEDLTR 366
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F G+ G +++ V+ G+S+ FGFV FE +D +++A+NG
Sbjct: 367 IF-GEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNG 410
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 7/184 (3%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
V ++E ++ ++V N+ MT L +F E G + S ++ D +S+ FG
Sbjct: 333 VRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDG-DGKSKCFG 391
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH 216
FV +V++A ++ +G + + V + + ER + + + + + VD
Sbjct: 392 FVNFENVDDAAMSVEALNGQKFDDKEWYVG--KAQKKSEREIELKSRFEQNMKEAVDKFQ 449
Query: 217 --KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+Y NL + L++ F Q G +++ + G SRG GFV F + E+ AL
Sbjct: 450 GANLYIKNLDDSIGDDKLKELF-AQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRAL 508
Query: 275 DAMN 278
MN
Sbjct: 509 AEMN 512
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+ + E E E ++ E+ + + A LY+ NL S+ L E+FA+ GT+ S +++
Sbjct: 424 QKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVM 483
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAI 171
D SRG GFV S EEA A+
Sbjct: 484 RDP-NGLSRGSGFVAFSSPEEASRAL 508
>gi|156841314|ref|XP_001644031.1| hypothetical protein Kpol_1026p21 [Vanderwaltozyma polyspora DSM
70294]
gi|156114664|gb|EDO16173.1| hypothetical protein Kpol_1026p21 [Vanderwaltozyma polyspora DSM
70294]
Length = 437
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 18/177 (10%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A ++VG L +S+ L F G V A ++Y+R TDRSRG+G+V S A+ A
Sbjct: 176 ETATIFVGRLSWSVDDEWLKNEFEHIGDVIGARVIYERGTDRSRGYGYVDFSSKSAAERA 235
Query: 171 IRLFDGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGN 222
++ G QI GR + + P GG+RA + F D P + ++ GN
Sbjct: 236 VKEMHGKQIDGREINCDMSTSKPAGGNGGDRA----------KKFGDVPSQPSDTLFLGN 285
Query: 223 LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + + + F ++S ++ T + +GFG+V + D QSALDA+ G
Sbjct: 286 LSFNADRDQIYELFSKHGEIISVRLPTHPETEQPKGFGYVQYGNVNDAQSALDALQG 342
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ + E+F++ G + S + T++ +GFG+V G+V +A+ A+
Sbjct: 281 LFLGNLSFNADRDQIYELFSKHGEIISVRLPTHPETEQPKGFGYVQYGNVNDAQSALDAL 340
Query: 175 DGSQIGGRTVKVNF 188
G I R V+++F
Sbjct: 341 QGEYIDNRPVRLDF 354
>gi|384245275|gb|EIE18770.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 351
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 15/177 (8%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
++ + D A LYVGNL +T + L E+F+ G V +I+ D++T S G+GFV
Sbjct: 14 RLGSGDAAKALYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFLDH 73
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
A A++ +G + G+ ++VN+ E +A S +I+ G+L
Sbjct: 74 RAADMALQSLNGRVLHGQELRVNWAFQKDQREDSA--------------SQFQIFVGDLA 119
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ + L +AFQ G A+V+++ TGRS+G+GFV+F+T D + AL M+G +
Sbjct: 120 SDINDKLLCEAFQ-SCGCADARVMWDHNTGRSKGYGFVSFKTRADAEQALSQMSGTM 175
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG+L + L E F G A A +++D T RS+G+GFV+ + +A++A+
Sbjct: 112 QIFVGDLASDINDKLLCEAFQSCGC-ADARVMWDHNTGRSKGYGFVSFKTRADAEQALSQ 170
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGP--KLQNSYQGFVDSPH-KIYAGNLGWGLTSQ 230
G+ +G R ++ + + + +A+ ++ + D + +Y GNL ++
Sbjct: 171 MSGTMLGSRRIRCGWAQHKQENSQASFAAVDRVSTLSRAQADPENANVYVGNLAPDVSDA 230
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L+ A +L K+ R G+ F F + D A+ ++G
Sbjct: 231 ELQTAVSQFGAVLDVKIY------RKGGYAFAQFASHADAVRAIVGLSG 273
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ A E A +YVGNL ++ + L ++ G V +I R G+ F S
Sbjct: 208 RAQADPENANVYVGNLAPDVSDAELQTAVSQFGAVLDVKIY------RKGGYAFAQFASH 261
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNF--PEVPRGGERAAMGP 202
+A AI G +GG+ +K ++ + +GG A P
Sbjct: 262 ADAVRAIVGLSGQNLGGKALKCSWGRHQARKGGPGGAQLP 301
>gi|398409740|ref|XP_003856335.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
gi|339476220|gb|EGP91311.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
Length = 505
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 106/209 (50%), Gaps = 20/209 (9%)
Query: 91 EEEEEEAVEE-----EEEP-------KVAASDEAA---RLYVGNLPYSMTSSSLAEVFAE 135
EEE+ +AVE E EP K A DE+A L+VGN+ +++ L F E
Sbjct: 205 EEEKPKAVESKKRKAEAEPAHATKKNKTDAVDESAPTGNLFVGNISWNVDEEWLTREFEE 264
Query: 136 AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGG 195
G +A I+ DR + RS+GFG+V + AK+A+ +G+++ GR ++++F PR
Sbjct: 265 FGELAGVRIITDRDSGRSKGFGYVEFSDPQNAKKALEAKNGAELDGRELRLDF-STPRTN 323
Query: 196 ERAAMGPKLQNSYQGFVDSPH----KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER 251
+ G K + F D+ + ++ GN+ + + + FQ + + ++ +R
Sbjct: 324 DGPGAGNKSNDRAARFGDTTNAPAATLFVGNISFDADENAITEYFQEHGTIKAVRLPTDR 383
Query: 252 YTGRSRGFGFVTFETAEDLQSALDAMNGV 280
TG +GFG+V + E+ Q+A A+ G
Sbjct: 384 ETGAPKGFGYVEMSSIEEAQAAFTALQGA 412
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
AA L+VGN+ + +++ E F E GT+ + + DR T +GFG+V M S+EEA+ A
Sbjct: 347 AATLFVGNISFDADENAITEYFQEHGTIKAVRLPTDRETGAPKGFGYVEMSSIEEAQAAF 406
Query: 172 RLFDGSQIGGRTVKVNF 188
G+ I GR +++++
Sbjct: 407 TALQGADIAGRPIRLDY 423
>gi|147769276|emb|CAN61580.1| hypothetical protein VITISV_008033 [Vitis vinifera]
Length = 294
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 24/195 (12%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+T Q +EEEE + RL N+P++ T+ + +F + GTV E+
Sbjct: 76 DTPQNDEEEEFS--------------RTRLIAQNIPWTCTAQDIRSLFEKYGTVLDVELS 121
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ 205
T R+RG F++MGS EEA A+ + ++ GR +KVN+ + K
Sbjct: 122 MHNKT-RNRGLAFISMGSPEEALAALSNLESYELEGRAIKVNYANPQKK--------KPS 172
Query: 206 NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAF-QGQPGLLSAKVIFERYTGRSRGFGFVTF 264
+ Q +P+ ++ NL + ++ LR+ F G ++SA+VIF RS G+GFV+F
Sbjct: 173 SPIQHKPVTPYNLFIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENPRRSSGYGFVSF 232
Query: 265 ETAEDLQSALDAMNG 279
+ E+ +AL + G
Sbjct: 233 GSKEEADTALSSFQG 247
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
L++ NLPY + L E F+ V SAE+++ RS G+GFV+ GS EEA A+
Sbjct: 185 LFIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENPRRSSGYGFVSFGSKEEADTALSS 244
Query: 174 FDGSQIGGRTVKV 186
F G GR ++V
Sbjct: 245 FQGQMFMGRPLRV 257
>gi|242042043|ref|XP_002468416.1| hypothetical protein SORBIDRAFT_01g045570 [Sorghum bicolor]
gi|241922270|gb|EER95414.1| hypothetical protein SORBIDRAFT_01g045570 [Sorghum bicolor]
Length = 415
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y + L FA G V S +I+ ++VT G+GF+ S E A++
Sbjct: 12 EEVRTLWIGDLQYWTDENYLYSCFAHTGEVQSVKIIRNKVTSLPEGYGFIEFVSHEAAEK 71
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ G T ++N+ G R G S H I+ G+L +
Sbjct: 72 ILQTYNGTQMPGTEHTFRLNWASFSSGERRPDPG------------SDHSIFVGDLAPDV 119
Query: 228 TSQGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F+ P + AKV+ + TGRS+G+GFV F + A+ MNGV
Sbjct: 120 TDYLLQETFRVNYPSVRGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGV 173
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 21/182 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D T RS+G+GFV E A+
Sbjct: 110 IFVGDLAPDVTDYLLQETFRVNYPSVRGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTE 169
Query: 174 FDGSQIGGRTVKVN--FPEVPRGGE------------RAAMGPKLQNSYQGFVDSPHKIY 219
+G R ++++ P+ G + A P+LQ + I+
Sbjct: 170 MNGVYCSTRPMRISAAIPKKSTGSQLQYSAAKAVYPATAYAMPQLQAVLPDSDPTNTTIF 229
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL +T LR L+ K+ +G GFV + + + A+ ++G
Sbjct: 230 IGNLDPNVTEDELRQICVQFGELIYVKIPV------GKGCGFVQYASRASAEEAVQRLHG 283
Query: 280 VV 281
+
Sbjct: 284 TM 285
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++GNL ++T L ++ + G E++Y ++ +G GFV S A+EA++
Sbjct: 228 IFIGNLDPNVTEDELRQICVQFG-----ELIYVKIP-VGKGCGFVQYASRASAEEAVQRL 281
Query: 175 DGSQIGGRTVKVNFPEVP 192
G+ IG + V++++ P
Sbjct: 282 HGTMIGQQAVRLSWGRSP 299
>gi|225459201|ref|XP_002285735.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
gi|302142004|emb|CBI19207.3| unnamed protein product [Vitis vinifera]
Length = 294
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 24/195 (12%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+T Q +EEEE + RL N+P++ T+ + +F + GTV E+
Sbjct: 76 DTPQNDEEEEFS--------------RTRLIAQNIPWTCTAQDIRSLFEKYGTVLDVELS 121
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ 205
T R+RG F++MGS EEA A+ + ++ GR +KVN+ + K
Sbjct: 122 MHNKT-RNRGLAFISMGSPEEALAALSNLESYELEGRAIKVNYANPQKK--------KPS 172
Query: 206 NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAF-QGQPGLLSAKVIFERYTGRSRGFGFVTF 264
+ Q +P+ ++ NL + ++ LR+ F G ++SA+VIF RS G+GFV+F
Sbjct: 173 SPIQHKPVTPYNLFIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENPRRSSGYGFVSF 232
Query: 265 ETAEDLQSALDAMNG 279
+ E+ +AL + G
Sbjct: 233 GSKEEADTALSSFQG 247
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
L++ NLPY + L E F+ V SAE+++ RS G+GFV+ GS EEA A+
Sbjct: 185 LFIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENPRRSSGYGFVSFGSKEEADTALSS 244
Query: 174 FDGSQIGGRTVKV 186
F G GR ++V
Sbjct: 245 FQGQMFMGRPLRV 257
>gi|328772428|gb|EGF82466.1| hypothetical protein BATDEDRAFT_86274 [Batrachochytrium
dendrobatidis JAM81]
Length = 586
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 35/218 (16%)
Query: 96 EAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRG 155
E + E + L+VGNLP+ +T L ++F +AG VA + I D + RSRG
Sbjct: 263 EVQPHKTETNAGLKHQCTTLFVGNLPFIITWQDLKDLFRQAGDVAVSHIPTDG-SGRSRG 321
Query: 156 FGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV----NFPEVPRGGERAAM--------GPK 203
FG VTM + E+A +AI++F+ + GR ++V + + + GE P
Sbjct: 322 FGIVTMTTPEDAAKAIQMFNRYILSGRQLEVREDRHVFKASKEGEHHEHSHRTTRLDSPA 381
Query: 204 LQNSYQGFVDSPH---------------------KIYAGNLGWGLTSQGLRDAFQGQPGL 242
Y G D+ H ++ GNL + + Q L+D F+ G+
Sbjct: 382 PLTQYGGQHDTGHIRHEHGYGNRSENYAMKNSGITLFVGNLVYSVIWQELKDLFR-SVGI 440
Query: 243 LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ I +GRSRGFGFVT T ED A+ +NG
Sbjct: 441 PTKAEIVTSSSGRSRGFGFVTMATQEDANKAIKELNGT 478
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 15/177 (8%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + L+VGNL YS+ L ++F G AEIV + RSRGFGFVTM + E+
Sbjct: 409 AMKNSGITLFVGNLVYSVIWQELKDLFRSVGIPTKAEIVTSS-SGRSRGFGFVTMATQED 467
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A +AI+ +G++ GR ++V + G + G + + QG ++ GNL +
Sbjct: 468 ANKAIKELNGTEFRGRKIEVRLDKF---GSHESRG--IPEALQGT-----QVLVGNLPFH 517
Query: 227 LTSQGLRDAFQ--GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ Q L+D F+ +P L + ++ E TGRS+G G V F+T ED AL V+
Sbjct: 518 MRWQDLKDIFRCVAEPQLANVRIDPE--TGRSQGVGTVRFQTEEDATRALSLNETVI 572
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++++GNLP++M S L +VF + V S +++ RSRGFG V + E A+ I
Sbjct: 20 QVFIGNLPFTMQSKDLKDVFNKTAGVTSVKVM-SHGNGRSRGFGLVYCDTPEIAQSIITQ 78
Query: 174 FDGSQIGGRTVKVNFPEVPR 193
F G ++ GR ++V V R
Sbjct: 79 FQGLELKGRQIEVRIDRVNR 98
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 182 RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG 241
+T +P G + P + G ++ GNL + +T Q L+D F+ Q G
Sbjct: 246 KTHHAVYPNDDCSGHSTEVQPHKTETNAGLKHQCTTLFVGNLPFIITWQDLKDLFR-QAG 304
Query: 242 LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
++ I +GRSRGFG VT T ED A+ N
Sbjct: 305 DVAVSHIPTDGSGRSRGFGIVTMTTPEDAAKAIQMFN 341
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
+++ GNL + + S+ L+D F G+ S KV+ GRSRGFG V +T E QS +
Sbjct: 20 QVFIGNLPFTMQSKDLKDVFNKTAGVTSVKVM-SHGNGRSRGFGLVYCDTPEIAQSIITQ 78
Query: 277 MNGV 280
G+
Sbjct: 79 FQGL 82
>gi|170091988|ref|XP_001877216.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648709|gb|EDR12952.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 218
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 99/166 (59%), Gaps = 6/166 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L +++ + LA+ FA+ G + SA + DR T +SRGFG+V + + ++A+++
Sbjct: 1 VFVGQLSWAVDNDRLAQEFADCGEIESATVQMDRNTGKSRGFGYVHFTTPDAVEKALQM- 59
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK-IYAGNLGWGLTSQGLR 233
+G +I GR +KV+ +PR +++ + K ++ V +P ++ GNL +G+T +
Sbjct: 60 NGQEIDGRAIKVD-RSLPR--DKSQVREKRAQAFGDEVSAPSSTLFVGNLSFGVTEDTVW 116
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+F G+ S ++ +R TGR +GFG+V FE + + A +A NG
Sbjct: 117 -SFFNDYGVKSVRLPTDRETGRPKGFGYVEFEDIDGAKKAFEAANG 161
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VGNL + +T ++ F + G V S + DR T R +GFG+V ++ AK+A
Sbjct: 101 LFVGNLSFGVTEDTVWSFFNDYG-VKSVRLPTDRETGRPKGFGYVEFEDIDGAKKAFEAA 159
Query: 175 DGSQIGGRTVKVNFPEVPR 193
+GS+I GR++++++ + PR
Sbjct: 160 NGSEIEGRSIRLDYSQ-PR 177
>gi|224078632|ref|XP_002305583.1| predicted protein [Populus trichocarpa]
gi|222848547|gb|EEE86094.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 18/177 (10%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A +DE L++G+L Y M + +A FA G VAS +I+ ++ T + G+GF+ M S
Sbjct: 44 ATADEVRTLWIGDLQYWMDENYIASCFAHTGEVASVKIIRNKQTSQIEGYGFIEMTSHGA 103
Query: 167 AKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH-KIYAGNL 223
A+ ++ ++G+ + G + ++N+ G +R DSP I+ G+L
Sbjct: 104 AERILQTYNGTPMPNGEQNFRLNWASFSGGDKRD--------------DSPDFTIFVGDL 149
Query: 224 GWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+T L++ F+ P + AKV+ +R TGR++G+GFV F + A+ MNG
Sbjct: 150 AADVTDFMLQETFRAHFPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 206
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 20/174 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DR+T R++G+GFV G E A+
Sbjct: 144 IFVGDLAADVTDFMLQETFRAHFPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 203
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG---PK--LQNSYQGFVDSPHK--IYAGNLGWG 226
+G+ R ++V ++A +G PK QN P+ I+ GNL
Sbjct: 204 MNGAFCSTRPMRVGLAS----NKKAVVGQQYPKASYQNPQPQNDGDPNNTTIFVGNLDSN 259
Query: 227 LTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L++ F GQ G LL K+ + GFV F + AL +NG
Sbjct: 260 VMDDHLKELF-GQYGQLLHVKIP------AGKRCGFVQFADRSSAEEALKMLNG 306
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
++ +A + +P+ ++VGNL ++ L E+F + G + +I +
Sbjct: 228 QQYPKASYQNPQPQNDGDPNNTTIFVGNLDSNVMDDHLKELFGQYGQLLHVKIPAGKRC- 286
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192
GFV A+EA+++ +G+Q+ G+ +++++ P
Sbjct: 287 -----GFVQFADRSSAEEALKMLNGAQLSGQNIRLSWGRNP 322
>gi|260943806|ref|XP_002616201.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
gi|238849850|gb|EEQ39314.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
Length = 419
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 20/187 (10%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
EE P+ AS+E A L+VG L +++ L F EAG V SA ++ +R T +SRG+G+V
Sbjct: 171 EETPE--ASEEPATLFVGRLSWNVDDEWLKREFEEAGGVISARVMIERSTGKSRGYGYVD 228
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVDSP- 215
S A++A+ G +I GR V ++ P+ P +RA + F D P
Sbjct: 229 FSSKAAAEKALNELQGKEIDGRPVNLDMSTGKPKTPASNDRA----------KKFGDVPS 278
Query: 216 ---HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
++ GNL + L + F ++S ++ T + +GFG+V F + E+ Q+
Sbjct: 279 APSDTLFIGNLSFNTERNKLFEIFGEYGTVVSCRLPTHPDTQQPKGFGYVQFSSVEEAQN 338
Query: 273 ALDAMNG 279
AL+++NG
Sbjct: 339 ALNSLNG 345
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 103 EPKVAASDEAAR------------LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
+PK AS++ A+ L++GNL ++ + L E+F E GTV S + T
Sbjct: 260 KPKTPASNDRAKKFGDVPSAPSDTLFIGNLSFNTERNKLFEIFGEYGTVVSCRLPTHPDT 319
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193
+ +GFG+V SVEEA+ A+ +G + GR +++F PR
Sbjct: 320 QQPKGFGYVQFSSVEEAQNALNSLNGEYLDGRPCRLDF-STPR 361
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 10/188 (5%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ ++E +A + ++ +YV NL ++T L +F++ GTV+S ++ D + RSRGFG
Sbjct: 187 INKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFG 245
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH- 216
FV + E AK+A+ G Q+G + + V + + R + K ++ F+ P+
Sbjct: 246 FVNFCNPENAKKAMESLCGLQLGSKKLFVG-KALKKDERREMLKQKFSDN---FIAKPNM 301
Query: 217 ---KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
+Y NL + LR+ F ++SAKV+ GRS+GFGFV F E+ + A
Sbjct: 302 RWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQA 360
Query: 274 LDAMNGVV 281
+NG +
Sbjct: 361 KRYLNGFL 368
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV NL S+TSS L +F G++ S ++V + +S+GFGFV + + A A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARS 169
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
GS + G+ K+ + ERAAM G DS + +Y NL +T L
Sbjct: 170 ALHGSMVYGK--KLFVAKFINKDERAAMA--------GNQDSTN-VYVKNLIETVTDDCL 218
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F Q G +S+ V+ GRSRGFGFV F E+ + A++++ G+
Sbjct: 219 HTLF-SQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGL 265
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +T L + F+ V S + + VT +S + ++ S A A+
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ S + G+ +++ + + R + GF + +Y NL +TS L
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRR--------RTRTGFAN----LYVKNLDSSITSSCLER 130
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ E G+S+GFGFV F+T + SA A++G
Sbjct: 131 MFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSALHG 173
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+ LYV NL SM + L E+F G + SA+++ RS+GFGFV + EE+K+A R
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKR 362
Query: 173 LFDGSQIGGRTVKVNFPE 190
+G + G+ + V E
Sbjct: 363 YLNGFLVDGKPIVVRVAE 380
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG L ++T + L E+F G VAS + D VT RS G+ +V + + + A+
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ S I GR ++ + + P L+ + QG I+ NL G+ ++ L D
Sbjct: 110 NYSLIKGRACRIMW---------SQRDPALRKTGQG------NIFIKNLDEGIDNKALHD 154
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + + GRS+G+GFV +ETAE +A+ A+NG++
Sbjct: 155 TFAAFGNVLSCKVATDEH-GRSKGYGFVHYETAEAADTAIKAVNGML 200
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + + +L + FA G V S ++ D RS+G+GFV + E A AI+
Sbjct: 138 IFIKNLDEGIDNKALHDTFAAFGNVLSCKVATDE-HGRSKGYGFVHYETAEAADTAIKAV 196
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V P + R ER + K++ F + +Y N+ +T + R
Sbjct: 197 NGMLLNDKKVYVG-PHISRK-ERQS---KIEEMKAQFTN----VYVKNIDAEVTDEEFRQ 247
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ Q G +++ VI GRS+GFGFV FE E+ Q +++++
Sbjct: 248 LFE-QFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESLH 290
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T ++F + G V SA I D RS+GFGFV EEA++ +
Sbjct: 231 VYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDE-EGRSKGFGFVNFEKHEEAQKGVESL 289
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
++ G+ + V R ++A +L+ SY+ + Y G NL +
Sbjct: 290 HDFELNGKKLFVT-----RAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVD 344
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ LR F+ + SAKV+ + G S+GFGFV F + ++ A+ MN
Sbjct: 345 DERLRQEFEPFGTITSAKVMRDE-KGSSKGFGFVCFSSPDEATKAVAEMN 393
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR 148
+ EEE ++ E+ + K++ + LY+ NL + L + F GT+ SA+++ D
Sbjct: 309 EREEELRKSYEQAKNEKLSKY-QGVNLYIKNLEDEVDDERLRQEFEPFGTITSAKVMRDE 367
Query: 149 VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
S+GFGFV S +EA +A+ + IG + + V+
Sbjct: 368 -KGSSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 406
>gi|242076980|ref|XP_002448426.1| hypothetical protein SORBIDRAFT_06g026990 [Sorghum bicolor]
gi|241939609|gb|EES12754.1| hypothetical protein SORBIDRAFT_06g026990 [Sorghum bicolor]
Length = 278
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 92/166 (55%), Gaps = 15/166 (9%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NLP+S + + ++FA+ GTV E++ + R+RGF FVTM + EEA A
Sbjct: 76 KLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKGK-DGRNRGFAFVTMSTTEEAAAAAEK 134
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ + GRT+KV F R + A + P ++ HK+Y NL W + ++
Sbjct: 135 LNSHDVMGRTIKVEFSRSFR--KPAPLPPIIER---------HKLYVSNLPWKARAPNVK 183
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F + LSA VIF+ G++ G+ FV+F T E+ ++AL ++G
Sbjct: 184 EFF-AKFNPLSANVIFD--NGKAAGYCFVSFGTKEEAEAALTELDG 226
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +LYV NLP+ + ++ E FA+ + SA +++D ++ G+ FV+ G+ EEA+ A
Sbjct: 164 ERHKLYVSNLPWKARAPNVKEFFAKFNPL-SANVIFD--NGKAAGYCFVSFGTKEEAEAA 220
Query: 171 IRLFDGSQIGGRTVKVNFPE 190
+ DG ++ GR V++ + E
Sbjct: 221 LTELDGKELMGRPVRLYWRE 240
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 113/214 (52%), Gaps = 21/214 (9%)
Query: 78 TEDSQDEPETE--QEEEEEEEAVEEEEEPKVAASDEAA----RLYVGNLPYSMTSSSLAE 131
TE S +PET Q + + + E+ K A +D+A+ L+VG L +++ L +
Sbjct: 360 TEMSDPKPETPVAQNGKNKRKGDTEDGSAKKAKTDDASGDIKNLFVGGLSWNVDDDWLKK 419
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF--- 188
F + G V SA ++ +R T+RS+GFG+V S E+A++A+ G++I GRT+ V+F
Sbjct: 420 EFEKFGEVISARVITERGTERSKGFGYVDFASPEDARKAVEAMAGTEIDGRTINVDFSAP 479
Query: 189 -PEVPRGGERAAMGPKLQNSY-QGFVDSP-HKIYAGNLGWGLTSQGLRDAFQGQPGLLSA 245
PE P P+ + S+ Q + +P ++ GNL + T + +AF + S
Sbjct: 480 KPERP---------PQEKRSFGQEELSAPTTTLFIGNLPFSATQDSVYEAFSEYGDINSV 530
Query: 246 KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ + T R +GFG+V F T E +A++ G
Sbjct: 531 RLPTDPETERIKGFGYVEFATQEAATAAVNVGRG 564
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL- 173
L++GNLP+S T S+ E F+E G + S + D T+R +GFG+V + E A A+ +
Sbjct: 503 LFIGNLPFSATQDSVYEAFSEYGDINSVRLPTDPETERIKGFGYVEFATQEAATAAVNVG 562
Query: 174 -FDGSQIGGRTVKVNF--PEVP 192
DG I R ++++ P P
Sbjct: 563 RGDGIYIDQRQARLDYSQPRAP 584
>gi|303321732|ref|XP_003070860.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110557|gb|EER28715.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320040347|gb|EFW22280.1| hypothetical protein CPSG_00179 [Coccidioides posadasii str.
Silveira]
Length = 498
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 104/197 (52%), Gaps = 10/197 (5%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E +E A + ++E AS E++ L+VGNL +++ L F G ++ IV DR
Sbjct: 241 ESDETPVAKKVKKETADEASAESSNLFVGNLSWNVDEEWLRSEFESFGELSGVRIVTDRD 300
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR--GGERAAMGPKLQNS 207
+ RSRGFG+V + E+A +A + ++I GRT+ ++F + GG R + Q+
Sbjct: 301 SGRSRGFGYVEFTNAEDASKAFKAKKDAEIDGRTINLDFANARQNAGGAR----DRAQSR 356
Query: 208 YQGFVD--SPHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263
+ F D SP ++ GN+ + +++ F +L ++ + +GR +GFG+V
Sbjct: 357 AKSFGDQTSPESDTLFIGNISFNADENAVQETFSSHGSILGIRLPTDPESGRPKGFGYVQ 416
Query: 264 FETAEDLQSALDAMNGV 280
F + ++ +SA +A+ G
Sbjct: 417 FSSVDEARSAFNALQGT 433
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L++GN+ ++ +++ E F+ G++ + D + R +GFG+V SV+EA+
Sbjct: 365 SPESDTLFIGNISFNADENAVQETFSSHGSILGIRLPTDPESGRPKGFGYVQFSSVDEAR 424
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
A G+++ GR ++++F PR
Sbjct: 425 SAFNALQGTELAGRAMRLDF-STPR 448
>gi|300121030|emb|CBK21412.2| unnamed protein product [Blastocystis hominis]
Length = 296
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 9/143 (6%)
Query: 138 TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGER 197
++ + +IVYDR T R RGFGFV+ + + +A+ +GS I GR ++V EV +G
Sbjct: 28 SLVTLQIVYDRNTGRPRGFGFVSFSTEDGLNKAMEQ-NGSLINGREIRV---EVAKG--- 80
Query: 198 AAMGPKLQNSYQGF-VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
++G +N Q + +K++ +L W T + LRDAF + K++ +R TGRS
Sbjct: 81 -SLGKNSENVRQNRNYNDENKVFVSSLSWNTTDEMLRDAFSQCGKIEHYKILTDRQTGRS 139
Query: 257 RGFGFVTFETAEDLQSALDAMNG 279
RG G V F T E++ +A+ MNG
Sbjct: 140 RGMGIVKFSTREEMNNAISTMNG 162
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
++ +++V +L ++ T L + F++ G + +I+ DR T RSRG G V + EE
Sbjct: 96 NDENKVFVSSLSWNTTDEMLRDAFSQCGKIEHYKILTDRQTGRSRGMGIVKFSTREEMNN 155
Query: 170 AIRLFDGSQIGGRTVKV 186
AI +GS + GR + V
Sbjct: 156 AISTMNGSTLDGRQIAV 172
>gi|119195917|ref|XP_001248562.1| hypothetical protein CIMG_02333 [Coccidioides immitis RS]
gi|392862234|gb|EAS37139.2| hypothetical protein CIMG_02333 [Coccidioides immitis RS]
Length = 496
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 104/197 (52%), Gaps = 10/197 (5%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E +E A + ++E AS E++ L+VGNL +++ L F G ++ IV DR
Sbjct: 239 ESDETPVAKKVKKETADEASAESSNLFVGNLSWNVDEEWLRSEFESFGELSGVRIVTDRD 298
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR--GGERAAMGPKLQNS 207
+ RSRGFG+V + E+A +A + ++I GRT+ ++F + GG R + Q+
Sbjct: 299 SGRSRGFGYVEFTNAEDASKAFKAKKDAEIDGRTINLDFANARQNAGGAR----DRAQSR 354
Query: 208 YQGFVD--SPHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263
+ F D SP ++ GN+ + +++ F +L ++ + +GR +GFG+V
Sbjct: 355 AKSFGDQTSPESDTLFIGNISFNADENAVQETFSSHGSILGIRLPTDPESGRPKGFGYVQ 414
Query: 264 FETAEDLQSALDAMNGV 280
F + ++ +SA +A+ G
Sbjct: 415 FSSVDEARSAFNALQGT 431
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L++GN+ ++ +++ E F+ G++ + D + R +GFG+V SV+EA+
Sbjct: 363 SPESDTLFIGNISFNADENAVQETFSSHGSILGIRLPTDPESGRPKGFGYVQFSSVDEAR 422
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
A G+++ GR ++++F PR
Sbjct: 423 SAFNALQGTELAGRAMRLDF-STPR 446
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L + L E FAE T+ S + DRVT +S +G+V S ++A A++
Sbjct: 12 ASLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRAMK 71
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
L + S + G+ ++V + ++ G ++ NL + + GL
Sbjct: 72 LKNNSYLNGKVIRVMWSHPDPSARKSGRG---------------NVFVKNLAGSIDNAGL 116
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D FQ +LS+KV+ G+S+G+GFV FE+ E +A++ +NG
Sbjct: 117 HDLFQKYGNILSSKVVMSG-DGKSKGYGFVQFESEESANNAIEKLNG 162
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 13/166 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ ++ L ++F + G + S+++V +S+G+GFV S E A AI
Sbjct: 102 VFVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSG-DGKSKGYGFVQFESEESANNAIEKL 160
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+GS +G + + V + R G+R G + + +Y NL +T L++
Sbjct: 161 NGSTVGDKQIYVG--KFVRKGDRILPGYDAKYT---------NLYIKNLDSDITEALLQE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F ++S VI + G S+GF FV +E +D + A++AMNG+
Sbjct: 210 KFSSFGKIISL-VISKDDNGLSKGFAFVNYENPDDARKAMEAMNGL 254
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 13/173 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL +T + L E F+ G + S I D S+GF FV + ++A++A+
Sbjct: 193 LYIKNLDSDITEALLQEKFSSFGKIISLVISKDD-NGLSKGFAFVNYENPDDARKAMEAM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY------QGFVDSPHKIYAGNLGWGLT 228
+G + G + + V R ++A L + Q +Y N+ +T
Sbjct: 252 NGLKFGSKNL-----YVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVT 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ LRD F + S KV+ + G S+GFGFV F E+ A+ + NG +
Sbjct: 307 DKELRDLFSSCGTITSVKVMRDD-KGISKGFGFVCFSNPEEANKAVRSFNGCM 358
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E EQ + E +E+ K AS+ LYV N+ +T L ++F+ GT+
Sbjct: 266 AQKKAEREQILHRQFEEKRKEQILKYQASN----LYVKNIDDDVTDKELRDLFSSCGTIT 321
Query: 141 SAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAIRLFDGS 177
S +++ D D+ S+GFGFV + EEA +A+R F+G
Sbjct: 322 SVKVMRD---DKGISKGFGFVCFSNPEEANKAVRSFNGC 357
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 104/216 (48%), Gaps = 17/216 (7%)
Query: 66 RQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMT 125
++ S D ++E S TE+ EA EE E AS+ A LYVG L ++T
Sbjct: 6 KEVQESLDQLNISE-SPATAVTEETPATSTEAAEESNESSTQASETLASLYVGELDPTVT 64
Query: 126 SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185
S L E F+ G+V S + D VT RS G+G+V S + A+ + ++I G +
Sbjct: 65 ESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALEELNYAEIKGVRCR 124
Query: 186 VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSA 245
+ + + P L+ S G I+ NL + ++ L D F +LS
Sbjct: 125 LMW---------SQRDPSLRRSGSG------NIFIKNLDPAIENKTLHDTFSSFGKVLSC 169
Query: 246 KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
KV + G S+GFGFV +E+ E Q+A++ +NG++
Sbjct: 170 KVATDE-NGNSKGFGFVHYESDEAAQAAIENINGML 204
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 21/172 (12%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL ++ + +L + F+ G V S ++ D S+GFGFV S E A+ AI
Sbjct: 139 SGNIFIKNLDPAIENKTLHDTFSSFGKVLSCKVATDE-NGNSKGFGFVHYESDEAAQAAI 197
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKL-----QNSYQGFVDSPHKIYAGNLGWG 226
+G + GR + V GP L ++ +Q + + ++ N
Sbjct: 198 ENINGMLLNGREIYV--------------GPHLAKKDRESRFQEMIKNYTNVFVKNFDTE 243
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
T LR+ F+ + S + + G ++GFGFV F +D A++A+N
Sbjct: 244 STEDELRELFESYGPITSIHLQVDS-EGHNKGFGFVNFAEHDDAVKAVEALN 294
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 10/134 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
++ L++ NL S+ + L E F GT+ SA+++ D +SRGFGFV + + EEA +A
Sbjct: 334 QSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLDE-NGKSRGFGFVCLSTPEEATKA 392
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
I + + + + V + P+ R+ + ++Q Q + G G+ +Q
Sbjct: 393 ISEMNQRMVANKPLYVALAQ-PKAIRRSQLAQQIQARNQMRMQQ-------QAGPGIPNQ 444
Query: 231 GLRDAFQG-QPGLL 243
++ F G QPG+L
Sbjct: 445 FVQPIFYGQQPGML 458
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 29/194 (14%)
Query: 104 PKVAASDEAAR----------LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
P +A D +R ++V N T L E+F G + S + D +
Sbjct: 214 PHLAKKDRESRFQEMIKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVDS-EGHN 272
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGER---------AAMGPKL 204
+GFGFV ++A +A+ + + G+ + V + ER A KL
Sbjct: 273 KGFGFVNFAEHDDAVKAVEALNDKEYKGKPLYVG--RAQKKNERVHELTKKYEADRLEKL 330
Query: 205 QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
Q YQ ++ NL + L + F+ + SAKV+ + G+SRGFGFV
Sbjct: 331 Q-KYQSV-----NLFIKNLDESIDDARLEEEFKPFGTITSAKVMLDE-NGKSRGFGFVCL 383
Query: 265 ETAEDLQSALDAMN 278
T E+ A+ MN
Sbjct: 384 STPEEATKAISEMN 397
>gi|356572088|ref|XP_003554202.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Glycine max]
Length = 336
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 101 EEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
EE +A++D A R L+V L ++ TS +L F E G + +++D+VT +SRG+GF+
Sbjct: 53 EEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIFDKVTGKSRGYGFI 112
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
T ++E ++A+R I GR N G +A P L S K+Y
Sbjct: 113 TFKNMESTQQALRA-PSKLIDGRLAVCNLACESLSGTSSA--PDL---------SLRKLY 160
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
G+L +TS+ L + F + V ++R T SRGFGFVT++TAE + A+D
Sbjct: 161 IGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAID 216
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY+G+L +TS L FA G + + YDR T+ SRGFGFVT + E AK+AI
Sbjct: 158 KLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAIDD 217
Query: 174 FDGSQIGGRTVKVNFPEVPRG 194
+ +GGR + V + + +G
Sbjct: 218 VE-KMLGGRNIVVKYADSHKG 237
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 213 DSPH-KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
D H K++ L W TS+ LR AFQ + VIF++ TG+SRG+GF+TF+ E Q
Sbjct: 62 DPAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIFDKVTGKSRGYGFITFKNMESTQ 121
Query: 272 SALDAMNGVV 281
AL A + ++
Sbjct: 122 QALRAPSKLI 131
>gi|357485175|ref|XP_003612875.1| 31 kDa ribonucleoprotein [Medicago truncatula]
gi|355514210|gb|AES95833.1| 31 kDa ribonucleoprotein [Medicago truncatula]
Length = 324
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 9/166 (5%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V NLP+S++ + ++F + GTV EI+ + + +G+ FVTM S E A+ A+ F
Sbjct: 98 LIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSK-DGKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ ++I GR ++V F + P+ ++ + IYA NL W S LRD
Sbjct: 157 NATEISGRILRVEFA-------KGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRD 209
Query: 235 AF-QGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + +SA+V+F+ G+S G+GFV++ T E+ ++A+ A+ G
Sbjct: 210 IFTENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQG 255
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+Y NL + S+ L ++F E T SA +V+ +S G+GFV+ + EEA+ AI
Sbjct: 193 IYASNLAWKARSTHLRDIFTENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISA 252
Query: 174 FDGSQIGGRTVKVNFPE 190
G ++ GR + V E
Sbjct: 253 LQGKELLGRPLLVKISE 269
>gi|224104133|ref|XP_002313332.1| predicted protein [Populus trichocarpa]
gi|222849740|gb|EEE87287.1| predicted protein [Populus trichocarpa]
Length = 415
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 15/177 (8%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A +E L++G+L Y S L FA G V S +I+ +++T + G+GFV S
Sbjct: 14 ATLEEVRTLWIGDLQYWADESYLTSCFAHTGEVVSIKIIRNKLTGQPEGYGFVEFVSHAA 73
Query: 167 AKEAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
A+ ++ ++G+Q+ G +T ++N+ G R GP+ H I+ G+L
Sbjct: 74 AERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPE------------HSIFVGDLA 121
Query: 225 WGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T L++ F+ P + AKV+ + TGRS+G+GFV F + A+ MNGV
Sbjct: 122 PDVTDYLLQETFRVHYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMTEMNGV 178
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 75/182 (41%), Gaps = 22/182 (12%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D T RS+G+GFV E A+
Sbjct: 115 IFVGDLAPDVTDYLLQETFRVHYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMTE 174
Query: 174 FDGSQIGGRTVKVNF--PE----------VPRG--GERAAMGPKLQNSYQGFVDSPHKIY 219
+G R ++++ P+ VP+ A P S G V + I+
Sbjct: 175 MNGVFCSTRPMRISMATPKKTTSFQQQYAVPKAFYPAPAYTAPVQVVSADGDVTN-TTIF 233
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL T + LR F + S K+ RG GFV F T + A+ M G
Sbjct: 234 VGNLDPNATEEDLRQTFLQLGEIASVKIP------AGRGCGFVQFATRTSAEEAIQRMQG 287
Query: 280 VV 281
V
Sbjct: 288 HV 289
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL + T L + F + G +AS +I RG GFV + A+EAI+
Sbjct: 232 IFVGNLDPNATEEDLRQTFLQLGEIASVKI------PAGRGCGFVQFATRTSAEEAIQRM 285
Query: 175 DGSQIGGRTVKVNF 188
G IG + V++++
Sbjct: 286 QGHVIGQQPVRISW 299
>gi|357454295|ref|XP_003597428.1| RNA-binding protein [Medicago truncatula]
gi|355486476|gb|AES67679.1| RNA-binding protein [Medicago truncatula]
Length = 428
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 15/177 (8%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A+ +E L++G+L Y + + L F+ G V S +I+ +++T + G+GF+ S
Sbjct: 9 ASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSA 68
Query: 167 AKEAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
A+ ++ ++G+Q+ G +T ++N+ G R GP H I+ G+L
Sbjct: 69 AERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPD------------HSIFVGDLA 116
Query: 225 WGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T L++ F+ G + AKV+ + TGRS+G+GFV F + A+ MNGV
Sbjct: 117 PDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGV 173
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 76/201 (37%), Gaps = 51/201 (25%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F G+V A++V D T RS+G+GFV E A+
Sbjct: 110 IFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSE 169
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ---------------------GFV 212
+G R +++ +A PK YQ +
Sbjct: 170 MNGVYCSTRPMRI-----------SAATPKKTTGYQQNPYAAVVAAAPVPKAIYPVPAYT 218
Query: 213 DSP------------HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFG 260
+P IY GNL ++ + L+ F ++S KV + G++ G
Sbjct: 219 TAPVNTVPPEYDVNNTTIYVGNLDLNVSEEELKQNFLQFGEIVSVKV----HPGKA--CG 272
Query: 261 FVTFETAEDLQSALDAMNGVV 281
FV F + A+ M G +
Sbjct: 273 FVQFGARASAEEAIQKMQGKI 293
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL +++ L + F + G + S ++ + GFV G+ A+EAI+
Sbjct: 236 IYVGNLDLNVSEEELKQNFLQFGEIVSVKV------HPGKACGFVQFGARASAEEAIQKM 289
Query: 175 DGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
G +G + ++V++ P+ R G ++ S Y G+ ++ YA
Sbjct: 290 QGKILGQQVIRVSWGRPQTARQDVPGGWGQQVDQSQWSAYYGYGQPGYEAYA 341
>gi|375103924|ref|ZP_09750185.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374664655|gb|EHR69440.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 129
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 55/74 (74%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL YS+T +SL + FAE GTV SA+++ DR + RS+GFGFV MGS EEA+ AIR
Sbjct: 4 KLYVGNLAYSVTDASLQQQFAECGTVTSAKVMMDRDSGRSKGFGFVEMGSHEEAQAAIRK 63
Query: 174 FDGSQIGGRTVKVN 187
G+ + GR + VN
Sbjct: 64 LHGASVDGRALVVN 77
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + +T L+ F + SAKV+ +R +GRS+GFGFV + E+ Q+A+
Sbjct: 3 NKLYVGNLAYSVTDASLQQQFAECGTVTSAKVMMDRDSGRSKGFGFVEMGSHEEAQAAIR 62
Query: 276 AMNG 279
++G
Sbjct: 63 KLHG 66
>gi|293337265|ref|NP_001168324.1| uncharacterized protein LOC100382091 [Zea mays]
gi|223947441|gb|ACN27804.1| unknown [Zea mays]
gi|223947469|gb|ACN27818.1| unknown [Zea mays]
gi|413933766|gb|AFW68317.1| hypothetical protein ZEAMMB73_975236, partial [Zea mays]
Length = 406
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 15/173 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
DEA L++G+L Y M + L F++AG V S +I+ ++ T + G+GF+ + A++
Sbjct: 67 DEARTLWIGDLQYWMDENYLYSCFSQAGEVISVKIIRNKQTGQPEGYGFIEFSNHAVAEQ 126
Query: 170 AIRLFDGSQIG--GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G + + K+N+ G +R G S + I+ G+L +
Sbjct: 127 VLQNYNGQMMPNVNQPFKLNWATSGAGEKRGDDG------------SDYTIFVGDLASDV 174
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
T L+D F+ + P + AKV+F+R TGRS+G+GFV F +++ A+ MNG
Sbjct: 175 TDFILQDTFKSRYPSVKGAKVVFDRTTGRSKGYGFVKFADSDEQTRAMTEMNG 227
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L + F + +V A++V+DR T RS+G+GFV +E A+
Sbjct: 165 IFVGDLASDVTDFILQDTFKSRYPSVKGAKVVFDRTTGRSKGYGFVKFADSDEQTRAMTE 224
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK-----LQNSYQGFVDS-PHK--IYAGNLGW 225
+G R +++ P ++ GP+ QN+ DS P+ ++ G L
Sbjct: 225 MNGQYCSSRAMRLG----PASNKKNTGGPQPSSAIYQNTQGTDSDSDPNNTTVFVGGLDP 280
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+T + L+ F LL K+ + GFV + + A+ +NG
Sbjct: 281 SVTDELLKQTFSPYGELLYVKIPVGKRC------GFVQYSNRASAEEAIRVLNG 328
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L S+T L + F+ G E++Y ++ R GFV + A+EAIR+
Sbjct: 273 VFVGGLDPSVTDELLKQTFSPYG-----ELLYVKIPVGKR-CGFVQYSNRASAEEAIRVL 326
Query: 175 DGSQIGGRTVKVNFPEVP 192
+GSQ+GG+++++++ P
Sbjct: 327 NGSQLGGQSIRLSWGRSP 344
>gi|255544854|ref|XP_002513488.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223547396|gb|EEF48891.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 412
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 15/177 (8%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A +E L++G+L Y + + L+ FA G V S +I+ +++T + G+GFV S
Sbjct: 16 ATLEEVRTLWIGDLQYWVDENYLSSCFAHTGEVLSIKIIRNKITGQPEGYGFVEFVSHVA 75
Query: 167 AKEAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
A+ ++ ++G+Q+ G +T ++N+ G R GP+ H I+ G+L
Sbjct: 76 AERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPE------------HSIFVGDLS 123
Query: 225 WGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T L++ F+ P + AKV+ + TGRS+G+GFV F + A+ MNGV
Sbjct: 124 PDVTDYLLQETFRANYPSVRGAKVVTDPNTGRSKGYGFVKFGDENERNRAMTEMNGV 180
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 42/192 (21%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V D T RS+G+GFV G E A+
Sbjct: 117 IFVGDLSPDVTDYLLQETFRANYPSVRGAKVVTDPNTGRSKGYGFVKFGDENERNRAMTE 176
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY-------------- 219
+G R +++ +A PK +YQ + IY
Sbjct: 177 MNGVFCSTRPMRI-----------SAATPKKTAAYQQQYATAKAIYPLPAYTAPVQVVPA 225
Query: 220 ----------AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
GNL +T + LR F L ++++ + RG GFV F T
Sbjct: 226 DNDITNTTIFVGNLDPNVTEEELRPIF-----LQFGEIVYVK-IPVGRGCGFVQFATRAS 279
Query: 270 LQSALDAMNGVV 281
+ A+ M G V
Sbjct: 280 AEEAIQRMQGHV 291
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL ++T L +F + G EIVY ++ RG GFV + A+EAI+
Sbjct: 234 IFVGNLDPNVTEEELRPIFLQFG-----EIVYVKIP-VGRGCGFVQFATRASAEEAIQRM 287
Query: 175 DGSQIGGRTVKVNF 188
G IG + V++++
Sbjct: 288 QGHVIGQQPVRISW 301
>gi|213401557|ref|XP_002171551.1| gar2 [Schizosaccharomyces japonicus yFS275]
gi|211999598|gb|EEB05258.1| gar2 [Schizosaccharomyces japonicus yFS275]
Length = 449
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 7/185 (3%)
Query: 100 EEEEPKVAA---SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF 156
EE++P+ AA S E+ ++VG L +++ L + F E GTV +A ++ D + RS+GF
Sbjct: 190 EEQKPQKAAKSESGESCTVFVGRLSWNVDDEWLGKEFEEYGTVVNARVIMDGQSGRSKGF 249
Query: 157 GFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP- 215
G+V S E AK A+ + +I GR V ++ PR + + + S G SP
Sbjct: 250 GYVDFDSPEAAKAAVAVNGQKEIDGRMVNLDI-STPRPAQNNNGFAQQRASNFGDKQSPP 308
Query: 216 -HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
++ GNL + T +R+AF + S ++ + +GR +GFG+VTF++ + + +
Sbjct: 309 SDTVFIGNLSFNATEDDVRNAFSSCGEIQSVRLPTDMNSGRPKGFGYVTFDSIDAAKQCV 368
Query: 275 DAMNG 279
+ MNG
Sbjct: 369 E-MNG 372
>gi|344231201|gb|EGV63083.1| hypothetical protein CANTEDRAFT_106956 [Candida tenuis ATCC 10573]
Length = 231
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 97/175 (55%), Gaps = 14/175 (8%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A L+VG L +++ L F +G V SA ++ +R T +SRG+G+V S +A++A
Sbjct: 1 EPATLFVGRLSWNIDDDWLKREFEPSGGVISARVIMERATGKSRGYGYVDFESKADAEKA 60
Query: 171 IRLFDGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLGW 225
++ F G +I GR + ++ P+ P +RA + V +P ++ GNL +
Sbjct: 61 LQDFQGKEIDGRPINLDLSTSKPQTPAKNDRA-------KKFGDVVSAPSDTLFIGNLSF 113
Query: 226 GLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
T L +AF GQ G ++S ++ T + +GFG+V + + E+ ++AL+A+NG
Sbjct: 114 NATRDKLFEAF-GQYGEVISCRIPTHPDTQQPKGFGYVQYGSIEEAKAALEALNG 167
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ T L E F + G V S I T + +GFG+V GS+EEAK A+
Sbjct: 106 LFIGNLSFNATRDKLFEAFGQYGEVISCRIPTHPDTQQPKGFGYVQYGSIEEAKAALEAL 165
Query: 175 DGSQIGGRTVKVNFPEVPR 193
+G I GR ++++ PR
Sbjct: 166 NGEYIEGRPCRLDY-STPR 183
>gi|302673016|ref|XP_003026195.1| hypothetical protein SCHCODRAFT_45556 [Schizophyllum commune H4-8]
gi|300099876|gb|EFI91292.1| hypothetical protein SCHCODRAFT_45556 [Schizophyllum commune H4-8]
Length = 218
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 9/174 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E ++VG LP+ + + L + FA+ G + SA ++ DR T SRGFG+V + E+AK+A
Sbjct: 1 EYTSVFVGGLPFDVDNDRLQQEFAKFGDIESAIVMMDRQTGNSRGFGYVHFATHEQAKKA 60
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLGWG 226
DG ++ GR ++ P+ + A P + + F D P + ++ GNL W
Sbjct: 61 KEEMDGYELDGRNIRTGTATKPQ--PKGAHDP--SSRARQFGDKPSEPSSTLFVGNLSWS 116
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T + F + G+ + ++ E TGR +GFG+V FE E + A +A+ G
Sbjct: 117 ATEDAVWGLFN-EYGVKNVRLPTEFETGRPKGFGYVEFEDIEGAKKAYEALAGA 169
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S+ ++ L+VGNL +S T ++ +F E G V + + + T R +GFG+V +E AK
Sbjct: 102 SEPSSTLFVGNLSWSATEDAVWGLFNEYG-VKNVRLPTEFETGRPKGFGYVEFEDIEGAK 160
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
+A G+++ GR +++++ + PR
Sbjct: 161 KAYEALAGAELDGRNIRLDYSQ-PR 184
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P AS +A LYVG L ++T + L E+F G VAS + D VT RS G+ +V +
Sbjct: 47 PASGASTPSASLYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLN 106
Query: 164 VEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+ + A+ + S I R ++ + + P L+ + QG I+ NL
Sbjct: 107 AADGERALEQLNYSLIKNRACRIMW---------SQRDPALRKTGQG------NIFIKNL 151
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ + L D F +LS KV + GRSRGFGFV ++TAE +A+ A+NG++
Sbjct: 152 DEQIDHKALHDTFAAFGNVLSCKVATDE-NGRSRGFGFVHYDTAEAADTAIKAVNGML 208
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + +L + FA G V S ++ D RSRGFGFV + E A AI+
Sbjct: 146 IFIKNLDEQIDHKALHDTFAAFGNVLSCKVATDE-NGRSRGFGFVHYDTAEAADTAIKAV 204
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V ER A + ++ + +Y NL +T D
Sbjct: 205 NGMLLNDKKVFVG--HYISKKERQAHIDEQKSQFT-------NLYVKNLDTEVTDDEFND 255
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F + G +++ V+ + G+S+GFGFV F+ E Q+A+DA++
Sbjct: 256 MF-AKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVDALH 298
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL +T ++FA+ G V SA + D +S+GFGFV E A+ A+
Sbjct: 239 LYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDE-EGKSKGFGFVNFKDHESAQAAVDAL 297
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPHK-----IYAGNLGWGLT 228
+++ G+ + V R ++A +L+ SY Q ++ K +Y NL +
Sbjct: 298 HDTELNGKKLFVT-----RAQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMD 352
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
LR F+ + S K++ + G S+GFGFV + + E+ A+ MN
Sbjct: 353 DDKLRAEFEPFGTITSCKIMRDE-KGTSKGFGFVCYSSPEEATKAVAEMN 401
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKVA--ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE + E+ K+ + + A LY+ NL M L F GT+ S +I+
Sbjct: 313 QKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIM 372
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187
D S+GFGFV S EEA +A+ + +G + + V+
Sbjct: 373 RDE-KGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVS 413
>gi|425781065|gb|EKV19047.1| Nucleolin protein Nsr1, putative [Penicillium digitatum PHI26]
Length = 537
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 16/176 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A L++GNL +++ L F+E G ++ IV DR T RSRGFG+V S +A +A+
Sbjct: 281 ANLFIGNLSWNVDEEWLQREFSEFGELSGVRIVTDRETGRSRGFGYVEYNSAADAAKAME 340
Query: 173 LFDGSQIGGRTVKVNFPEVPR-----GGERAAMGPKLQNSYQGFVD--SPHK--IYAGNL 223
G+ + GRT+ +++ PR G +R+ Q+ + + D SP ++ GNL
Sbjct: 341 AKKGTDLDGRTINLDY-AAPRQANTQGADRS------QDRARSYGDQTSPESDTLFVGNL 393
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ T L + F Q +L ++ E+ TGR +GFG+V F + ++ ++A A+NG
Sbjct: 394 PFSATEDALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAKAAHAALNG 449
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGNLP+S T +L EVF G+V + ++ T R +GFG+V S++EAK
Sbjct: 382 SPESDTLFVGNLPFSATEDALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAK 441
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
A +G ++ GR ++++F PR
Sbjct: 442 AAHAALNGHELEGRAIRLDF-STPR 465
>gi|363754371|ref|XP_003647401.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891038|gb|AET40584.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
Length = 448
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 102/203 (50%), Gaps = 15/203 (7%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
S D ++ ++E+ + +++ P E A ++VG L +S+ L F G V
Sbjct: 184 STDSANLDRSKDEKSQKKHKKDSPT-----EPATIFVGRLSWSIDDEWLKTEFEHIGGVI 238
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
SA ++Y+R T+RSRG+G+V A++AI+ G +I GR + V+ + A
Sbjct: 239 SARVIYERGTERSRGYGYVDFEDKSYAEKAIKEMQGKEIDGRPINVDM-----STSKPAS 293
Query: 201 GPKLQNSYQGFVDSPHK----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
PK ++ + F D P + ++ GNL + + + F+ ++S ++ T +
Sbjct: 294 NPK-EDRAKKFGDVPSQPSDTLFLGNLSFNADRDNIFELFKDYGSIISVRIPTHPETNQP 352
Query: 257 RGFGFVTFETAEDLQSALDAMNG 279
+GFG+V + + E+ Q ALD + G
Sbjct: 353 KGFGYVQYASIEEAQKALDKLQG 375
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ ++ E+F + G++ S I T++ +GFG+V S+EEA++A+
Sbjct: 314 LFLGNLSFNADRDNIFELFKDYGSIISVRIPTHPETNQPKGFGYVQYASIEEAQKALDKL 373
Query: 175 DGSQIGGRTVKVNF 188
G I R V+++F
Sbjct: 374 QGEYIDNRPVRLDF 387
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 14/177 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +Y+ N M L E+F+ G S +++ D + RSRGFGFV G+ EEA++A
Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLG 224
+ +G ++ GR V V + + R GE +++ N YQG +Y NL
Sbjct: 248 VTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGV-----NLYVKNLD 302
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
G+ LR F + S KV+ E G S+GFGFV F + E+ A+ MNG +
Sbjct: 303 DGIDDDRLRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+G+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + Y SRG+GFV FET E A+ MNG++
Sbjct: 116 YDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGML 162
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E Y V +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREL---------EYGAKVMEFTNVYIKNFGEDMDDKRLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +GRSRGFGFV + E+ Q A+ MNG
Sbjct: 210 IFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNG 253
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ S +++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIVSTKPLYVALAQ--RKEERKAI---LTNQY 382
>gi|145350218|ref|XP_001419511.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579743|gb|ABO97804.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 194
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 91/178 (51%), Gaps = 12/178 (6%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAG---TVASAEIVYDRVTDRSRGFGFVTMGSV 164
A + ++YVGNLPY + L + F+ A +V A+I+ R RS+G G VT S
Sbjct: 9 AVNADTKVYVGNLPYGCSWQDLKDHFSNAMGGESVRFADILTSR-DGRSKGCGIVTFNSS 67
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH-KIYAGNL 223
E+AK+AI ++IG R + F R GER G L+N SP +Y GNL
Sbjct: 68 EDAKKAIETMHDTEIGERKI---FVREDREGER---GNDLRNRIGPSATSPDASVYVGNL 121
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
W Q L+D F+ + A V + GRSRG+G VTF + Q A++ +NG +
Sbjct: 122 PWSTRWQELKDIFRKVGNVAHADVTMG-FDGRSRGWGVVTFMDPQCAQVAIERLNGTM 178
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 75 FQVTEDSQDEPETEQEEE--EEEEAVEEEEEPKV----------AASDEAARLYVGNLPY 122
F +ED++ ET + E E + V E+ E + +A+ A +YVGNLP+
Sbjct: 64 FNSSEDAKKAIETMHDTEIGERKIFVREDREGERGNDLRNRIGPSATSPDASVYVGNLPW 123
Query: 123 SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR 182
S L ++F + G VA A++ RSRG+G VT + A+ AI +G+ + R
Sbjct: 124 STRWQELKDIFRKVGNVAHADVTMG-FDGRSRGWGVVTFMDPQCAQVAIERLNGTMLNDR 182
Query: 183 TVKVNFPEVPR 193
+ V E R
Sbjct: 183 ALIVRRDERAR 193
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L ++T + L E+F G VAS + D VT RS G+ +V + + + A+
Sbjct: 43 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 102
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ S I GR ++ + + P L+ + QG I+ NL + ++
Sbjct: 103 EQLNYSLIKGRACRIMW---------SQRDPALRKTGQG------NIFIKNLDEQIDNKA 147
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + GRS+G+GFV +ETAE ++A+ A+NG++
Sbjct: 148 LHDTFAAFGNVLSCKVATDEH-GRSKGYGFVHYETAEAAETAIKAVNGML 196
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL +T ++F + G V SA I D +SRGFGFV + EEA++A+
Sbjct: 231 IYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDE-QGQSRGFGFVNFETHEEAQKAVETL 289
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPHK-----IYAGNLGWGLT 228
S+ GR + V+ R ++A +L+ SY Q V+ K +Y NL +
Sbjct: 290 HDSEYHGRKLFVS-----RAQKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDID 344
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ LR F+ + SAKV+ + G S+GFGFV F + ++ A+ MN
Sbjct: 345 DERLRQEFEPFGSITSAKVMRDE-KGTSKGFGFVCFSSPDEATKAVAEMN 393
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 7/164 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + + +L + FA G V S ++ D RS+G+GFV + E A+ AI+
Sbjct: 134 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDE-HGRSKGYGFVHYETAEAAETAIKAV 192
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + R KL+ F + IY NL +T
Sbjct: 193 NGMLLNDKKVYVGH-HISRKASSRERQSKLEEMKAQFTN----IYVKNLDPEVTQDDFVK 247
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ Q G +++ VI G+SRGFGFV FET E+ Q A++ ++
Sbjct: 248 LFE-QFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVETLH 290
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE + E+ KV + + LY+ NL + L + F G++ SA+++
Sbjct: 305 QKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDIDDERLRQEFEPFGSITSAKVM 364
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
D S+GFGFV S +EA +A+ + IG + + V+
Sbjct: 365 RDE-KGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSL 406
>gi|45198625|ref|NP_985654.1| AFR107Wp [Ashbya gossypii ATCC 10895]
gi|44984635|gb|AAS53478.1| AFR107Wp [Ashbya gossypii ATCC 10895]
gi|374108884|gb|AEY97790.1| FAFR107Wp [Ashbya gossypii FDAG1]
Length = 396
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Query: 90 EEEEEEEAVEEEEE---PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
+EE ++ + E E++ K + A ++VG L +S+ L F G V A ++Y
Sbjct: 141 KEESKKRSAESEDDAVAKKQKTDGQPATIFVGRLSWSVDDEWLKTEFDHIGGVVGARVIY 200
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN 206
+R TD+SRG+G+V V A++A++ G +I GR + + + A P+ ++
Sbjct: 201 ERGTDKSRGYGYVDFEDVSYAEKAVKEMHGKEIDGRAINCDM-----STSKPASAPR-ED 254
Query: 207 SYQGFVDSPHK----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFV 262
+ + D+P + ++ GNL + L + F ++S ++ + + +GFG+V
Sbjct: 255 RAKKYGDTPSQPSDTLFLGNLSFNADRDALFELFSKHGNVISVRIPTHPESNQPKGFGYV 314
Query: 263 TFETAEDLQSALDAMNG 279
+ + E+ Q+ALDA+ G
Sbjct: 315 QYGSVEEAQAALDALQG 331
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ +L E+F++ G V S I +++ +GFG+V GSVEEA+ A+
Sbjct: 270 LFLGNLSFNADRDALFELFSKHGNVISVRIPTHPESNQPKGFGYVQYGSVEEAQAALDAL 329
Query: 175 DGSQIGGRTVKVNF 188
G I R V+++F
Sbjct: 330 QGEYIDNRPVRIDF 343
>gi|218192181|gb|EEC74608.1| hypothetical protein OsI_10216 [Oryza sativa Indica Group]
Length = 416
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y + L FA G + S +I+ +++T G+GF+ S E A++
Sbjct: 13 EEVRTLWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEK 72
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ G T ++N+ G R GP H I+ G+L +
Sbjct: 73 VLQTYNGTQMPGTEHTFRLNWASFSSGERRPDAGPD------------HSIFVGDLAPDV 120
Query: 228 TSQGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F+ P + AKV+ + TGRS+G+GFV F + A+ MNG+
Sbjct: 121 TDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGM 174
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 27/190 (14%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D T RS+G+GFV E A+
Sbjct: 111 IFVGDLAPDVTDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTE 170
Query: 174 FDGSQIGGRTVKVN--FPEVPRG-----GERAAMG-------PKLQNSYQGFVDSPHKIY 219
+G R ++++ P+ G G AM P++Q + I+
Sbjct: 171 MNGMYCSTRPMRISAAIPKKTTGSQLQYGAAKAMYPAAGYAVPQVQPVLPDSDPTNTTIF 230
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL +T LR Q + ++I+ + ++ GFV + + + A+ ++G
Sbjct: 231 IGNLDQNVTEDELR-----QICVQFGELIYVKIPA-NKACGFVQYASRASAEEAVQRLHG 284
Query: 280 ------VVRL 283
VVRL
Sbjct: 285 TTIGQQVVRL 294
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++GNL ++T L ++ + G E++Y ++ ++ GFV S A+EA++
Sbjct: 229 IFIGNLDQNVTEDELRQICVQFG-----ELIYVKIP-ANKACGFVQYASRASAEEAVQRL 282
Query: 175 DGSQIGGRTVKVNFPEVP 192
G+ IG + V++++ P
Sbjct: 283 HGTTIGQQVVRLSWGRSP 300
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG+L ++T L EVF+ G VAS + D +T RS G+ +V +V +A+ A+
Sbjct: 23 SASLYVGDLDPNVTEPQLFEVFSVVGPVASIRVCRDAMTRRSLGYAYVNFHNVVDAERAL 82
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ +QI G+ ++ + P ++ S G I+ NL + ++
Sbjct: 83 DTLNYTQIKGKACRIMWKH---------RDPSIRKSGAG------NIFIKNLDKTVDTRT 127
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + SRGFGFV FETAE+ A+ +NG++
Sbjct: 128 LHDTFSQFGNILSCKVSMDEHAN-SRGFGFVQFETAEEANEAISKVNGML 176
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 14/180 (7%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+ +P + S A +++ NL ++ + +L + F++ G + S ++ D + SRGFGFV
Sbjct: 100 KHRDPSIRKSG-AGNIFIKNLDKTVDTRTLHDTFSQFGNILSCKVSMDEHAN-SRGFGFV 157
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+ EEA EAI +G + + + V P +PRG ER + N + F + +Y
Sbjct: 158 QFETAEEANEAISKVNGMLLEDKRLFVG-PFIPRG-EREST-----NGERRFTN----VY 206
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
N ++ R +F+ + S K I + G S+ FGFV F+ A+D + + MNG
Sbjct: 207 VKNFPDNVSDDDFRKSFERYGEITSCK-IMRKEDGTSKCFGFVNFKEADDAKKCCEEMNG 265
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 13/173 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVTMGSVEEAKEAIRL 173
+YV N P +++ + F G + S +I+ R D S+ FGFV ++AK+
Sbjct: 205 VYVKNFPDNVSDDDFRKSFERYGEITSCKIM--RKEDGTSKCFGFVNFKEADDAKKCCEE 262
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK------IYAGNLGWGL 227
+G + G + + ER KL+ Y K +Y NL +
Sbjct: 263 MNGQKPFGGERDIYAGRAEKESERKE---KLKKKYDQIRMERLKNNQLVNLYIKNLDDTI 319
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGR-SRGFGFVTFETAEDLQSALDAMNG 279
+ LR F+ + SAKV+ ++ S+GFGFV F E+ A+ AMNG
Sbjct: 320 DDEKLRQTFEQFGTITSAKVMRDKDRPEVSKGFGFVCFAQPEEATRAVTAMNG 372
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 88 EQEEEEEEEAVEEEEEPKVA--ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
E+E E +E+ ++ ++ ++ +++ LY+ NL ++ L + F + GT+ SA+++
Sbjct: 281 EKESERKEKLKKKYDQIRMERLKNNQLVNLYIKNLDDTIDDEKLRQTFEQFGTITSAKVM 340
Query: 146 YDRVTDR---SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D+ DR S+GFGFV EEA A+ +G +G + + V
Sbjct: 341 RDK--DRPEVSKGFGFVCFAQPEEATRAVTAMNGQMVGTKPIYV 382
>gi|154288132|ref|XP_001544861.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408502|gb|EDN04043.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 500
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 104/197 (52%), Gaps = 8/197 (4%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
+++ E+EEE V ++ KV S+E L++GNL +++ L F E G +A IV D
Sbjct: 235 KRKAEDEEEEVSAPKKTKVD-SNEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTD 293
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS 207
R + RSRGFG+V + +A +A +++ GR + V+F G AA + Q+
Sbjct: 294 RDSGRSRGFGYVEFTNAADAAKAHAAKKDAELDGRKLNVDFAN---GRSNAAPKERAQSR 350
Query: 208 YQGFVD--SPHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263
Q F D SP ++ GN+ + + +AF +L ++ + +GR +GFG+V
Sbjct: 351 AQNFGDQTSPESDTLFIGNIAFSANENMISEAFAEHGSILGVRLPTDPESGRPKGFGYVQ 410
Query: 264 FETAEDLQSALDAMNGV 280
F + ++ +SA A+NG
Sbjct: 411 FSSVDEARSAFQALNGA 427
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 52/80 (65%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L++GN+ +S + ++E FAE G++ + D + R +GFG+V SV+EA+
Sbjct: 359 SPESDTLFIGNIAFSANENMISEAFAEHGSILGVRLPTDPESGRPKGFGYVQFSSVDEAR 418
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
A + +G+ +GGR+++++F
Sbjct: 419 SAFQALNGADLGGRSMRLDF 438
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 18/205 (8%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
VT+ + ++ E + EE+ E E PKV S A LYVG L S++ + L ++F+
Sbjct: 4 VTDKTAEQLEQLKIEEQTAPTTTESETPKVETS--GASLYVGELDPSVSEALLYDIFSPI 61
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
G+V+S + D +T+ S G+ +V E ++AI + + I G+ ++ +
Sbjct: 62 GSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAIEQLNYTLIKGKPCRIMW-------- 113
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
+ P L+ G IY NL + ++ L + F +LS KV + G S
Sbjct: 114 -SQRDPSLRKKGSG------NIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDD-NGVS 165
Query: 257 RGFGFVTFETAEDLQSALDAMNGVV 281
RGFGFV FE D + A++A+NG++
Sbjct: 166 RGFGFVHFENESDARDAIEAVNGML 190
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +Y+ NL ++ + SL E F+ G + S ++ D SRGFGFV + +A++AI
Sbjct: 125 SGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDD-NGVSRGFGFVHFENESDARDAI 183
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + + V V + V + ++ KL+ F + IY N+ + +
Sbjct: 184 EAVNGMLMNDQEVYVAW-HVSKKDRQS----KLEEVKAKFTN----IYVKNIDLETSQEE 234
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F + G +++ V+ + G+ RGFGF+ FE A+D +N
Sbjct: 235 FEQLF-SKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELN 280
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ + ++F++ G + SA + D + RGFGF+ A A+
Sbjct: 221 IYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDS-EGKLRGFGFINFEDHSTAARAVDEL 279
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ S G+T+ V R ++ +L+ Y+ Y G NL +
Sbjct: 280 NESDFRGQTLYVG-----RAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSID 334
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ L+D F + S KV+ + G SRGFGFV F T E+ A+ N
Sbjct: 335 DEKLKDEFAPFGTITSVKVMKDE-AGSSRGFGFVCFSTPEEATKAITEKN 383
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E +QE +++ E E+ A + L++ NL S+ L + FA GT+
Sbjct: 294 AQKKHERQQELKKQYETARLEK----LAKYQGVNLFIKNLDDSIDDEKLKDEFAPFGTIT 349
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
S +++ D SRGFGFV + EEA +AI + + G+ + V
Sbjct: 350 SVKVMKDEAGS-SRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYV 394
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A+
Sbjct: 57 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 116
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 117 EDLNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAIDNKA 161
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + Y G S+G+GFV +ETAE +A+ +NG++
Sbjct: 162 LHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAATNAIKHVNGML 210
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGN-SKGYGFVHYETAEAATNAIKHV 206
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + IY N+ +T + R
Sbjct: 207 NGMLLNEKKVFV--------GHHIAKKDR-QSKFEEMKANFTNIYVKNVEQDVTDEEFRG 257
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + TG+SRGFGFV F E +A++A+N
Sbjct: 258 LFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALN 301
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T +F + G + SA + D T +SRGFGFV E A A+
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 300
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+ ++ G+ + V R ++ +L+ Y+ ++ K +Y NL +
Sbjct: 301 NEYELKGQKLYVG-----RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 355
Query: 229 SQGLRDAFQGQPGLLSAKVIFE 250
+ LR+ F + SAKV+ E
Sbjct: 356 DEKLRELFSSYGNITSAKVMRE 377
>gi|108706453|gb|ABF94248.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694482|dbj|BAG89475.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 416
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y + L FA G + S +I+ +++T G+GF+ S E A++
Sbjct: 13 EEVRTLWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEK 72
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ G T ++N+ G R GP H I+ G+L +
Sbjct: 73 VLQTYNGTQMPGTEHTFRLNWASFSSGERRPDAGPD------------HSIFVGDLAPDV 120
Query: 228 TSQGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F+ P + AKV+ + TGRS+G+GFV F + A+ MNG+
Sbjct: 121 TDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGM 174
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 27/190 (14%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D T RS+G+GFV E A+
Sbjct: 111 IFVGDLAPDVTDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTE 170
Query: 174 FDGSQIGGRTVKVN--FPEVPRG-----GERAAMG-------PKLQNSYQGFVDSPHKIY 219
+G R ++++ P+ G G AM P++Q + I+
Sbjct: 171 MNGMYCSTRPMRISAAIPKKTTGSQLQYGAAKAMYPAAGYAVPQVQPVLPDSDPTNTTIF 230
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL +T LR Q + ++I+ + ++ GFV + + + A+ ++G
Sbjct: 231 IGNLDQNVTEDELR-----QICVQFGELIYVKIPA-NKACGFVQYASRASAEEAVQRLHG 284
Query: 280 ------VVRL 283
VVRL
Sbjct: 285 TTIGQQVVRL 294
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++GNL ++T L ++ + G E++Y ++ ++ GFV S A+EA++
Sbjct: 229 IFIGNLDQNVTEDELRQICVQFG-----ELIYVKIP-ANKACGFVQYASRASAEEAVQRL 282
Query: 175 DGSQIGGRTVKVNFPEVP 192
G+ IG + V++++ P
Sbjct: 283 HGTTIGQQVVRLSWGRSP 300
>gi|224060641|ref|XP_002193452.1| PREDICTED: nucleolin [Taeniopygia guttata]
Length = 692
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 19/171 (11%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E+ L V NL Y+ T +L EVF +A ++ V R +G+ FV + E+AKEA
Sbjct: 453 ESTTLIVNNLSYAATEETLQEVFKKASSIR----VPQNNQGRPKGYAFVDFATAEDAKEA 508
Query: 171 IRLFDGSQIGGRTVKVNF--PEVPRGGE--RAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ + ++I GRT+++ F P +G R G Q S FV L
Sbjct: 509 LNSLNNTEIEGRTIRLEFSSPSWQKGNTNARGGGGGFGQQSKTLFVRG--------LSED 560
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
T + LR++F+G +SA+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 561 TTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 608
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 21/170 (12%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A L++ NLPY +T + EVF A V IV ++ + SRG +V + EA +A
Sbjct: 367 DARTLFLKNLPYRITEDDIREVFENALEV---RIVMNKDGN-SRGMAYVEFKTEAEADKA 422
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR V ++F GE++ Q + +G + + NL + T +
Sbjct: 423 LEEKQGTEIEGRAVVIDF-----TGEKSQ-----QENQKGESTT---LIVNNLSYAATEE 469
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L++ F+ S+ + + GR +G+ FV F TAED + AL+++N
Sbjct: 470 TLQEVFKK----ASSIRVPQNNQGRPKGYAFVDFATAEDAKEALNSLNNT 515
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V L T +L E F G++ SA IV DR T S+GFGFV S E+AK A
Sbjct: 552 LFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 608
Query: 175 DGSQIGGRTVKVNFPEVPRG 194
+ +I G V ++F + P+G
Sbjct: 609 EDGEIDGNKVTLDFAK-PKG 627
>gi|300176323|emb|CBK23634.2| unnamed protein product [Blastocystis hominis]
Length = 325
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 24/184 (13%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++ V N+P++ S +L E F+ G V A I+Y+R + RSRGFGFV+ S E K+A+ +
Sbjct: 7 KVLVKNIPFTCNSETLIEFFSACGDVIDANILYNRESGRSRGFGFVSFRSEEGLKKALDM 66
Query: 174 FDGSQIGGRTVKV------------------NFPEVPRGGER-AAMGPKLQNSYQGFVDS 214
+G+ + GR ++V +V R R A P SY D+
Sbjct: 67 -NGTNMNGRVLRVIKKEDREDRDERRVRDRRTHKDVKRERSRDRAPAPAPARSY----DN 121
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+K+ L W T L F ++ ++ R TG SRG G V +E E Q AL
Sbjct: 122 TNKLIVLQLPWKCTKADLTKLFDKFGKIVYCNIVVNRETGLSRGMGIVKYEEEESYQKAL 181
Query: 275 DAMN 278
M+
Sbjct: 182 KEMD 185
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D +L V LP+ T + L ++F + G + IV +R T SRG G V E ++
Sbjct: 120 DNTNKLIVLQLPWKCTKADLTKLFDKFGKIVYCNIVVNRETGLSRGMGIVKYEEEESYQK 179
Query: 170 AIRLFDGSQIGGRTVKV 186
A++ D + GR + V
Sbjct: 180 ALKEMDCFEYEGRKLYV 196
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 16/173 (9%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + +
Sbjct: 49 SHTSASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTADGE 108
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
A+ + + I GR ++ + + P L+ + QG ++ NL +
Sbjct: 109 RALEELNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAID 153
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
++ L D F +LS KV + ++ SRG+GFV +ETAE +A+ +NG++
Sbjct: 154 NKALHDTFAAFGNILSCKVAQDEFSN-SRGYGFVHYETAEAANNAIKHVNGML 205
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 15/166 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D ++ SRG+GFV + E A AI+
Sbjct: 143 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFSN-SRGYGFVHYETAEAANNAIKHV 201
Query: 175 DGSQIGGRTVKV--NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + + V V + P+ R + M N +Y N+ +T +
Sbjct: 202 NGMLLNEKKVFVGHHIPKKDRQSKFDEMKANFTN-----------VYVKNIDPEVTDEEF 250
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
R F+ + SA + ++ G SRGFGFV F+ + A++ ++
Sbjct: 251 RTMFENYGPITSASLSRDQ-DGVSRGFGFVNFQEHQHAAKAVEELH 295
>gi|425781538|gb|EKV19498.1| Ribosome biogenesis (Nop4), putative [Penicillium digitatum PHI26]
gi|425782769|gb|EKV20659.1| Ribosome biogenesis (Nop4), putative [Penicillium digitatum Pd1]
Length = 722
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 23/181 (12%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V +LP S T+ SLAE F+++ + A +V D+ T S+GFGFVT VE+A+ A++ F
Sbjct: 38 LFVRSLPTSATTESLAEHFSQSYIIKHAVVVSDKETKVSKGFGFVTFADVEDAESALKEF 97
Query: 175 DGSQIGGRTVKVNFPE-------------VPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+GS+ G+ ++V++ E VP R + K + QG P K+
Sbjct: 98 NGSKFDGKIIRVDYAESRKREIDEKIGRSVPTAASRESKKQKEEERGQGL---PPKLIVR 154
Query: 222 NLGWGLTS-QGLRDAFQ--GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
NL W + + L F+ G+ V + G+ GFGFVT ++ + AL +N
Sbjct: 155 NLPWSVKEPEDLNVLFRSFGKVKF----VTLPKRNGKLSGFGFVTMRGRKNAEKALQMIN 210
Query: 279 G 279
G
Sbjct: 211 G 211
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 20/92 (21%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
A +++ NLP+S T +L + F G + A +V D T+R RG GFV E+A
Sbjct: 300 ATTIFIRNLPFSATDQALYDHFKTHFGPLRYARVVLDYETERPRGTGFVCFWKPEDANTC 359
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGP 202
IR E PRG E +M P
Sbjct: 360 IR-----------------EAPRGAE--SMAP 372
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 114 RLYVGNLPYSMTS-SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+L V NLP+S+ L +F G V + + + GFGFVTM + A++A++
Sbjct: 150 KLIVRNLPWSVKEPEDLNVLFRSFGKVKF--VTLPKRNGKLSGFGFVTMRGRKNAEKALQ 207
Query: 173 LFDGSQIGGRTVKVNF 188
+ +G +I GR + V++
Sbjct: 208 MINGKEIDGRQIAVDW 223
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG L ++T + L E+F G VAS + D VT RS G+ +V + + + A+
Sbjct: 44 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 103
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ S I GR ++ + + P L+ + QG I+ NL + ++ L
Sbjct: 104 QLNYSSIKGRACRIMWSQ---------RDPALRKTGQG------NIFIKNLDEQIDNKAL 148
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV + + GRS+G+GFV +ETAE ++A+ A+NG++
Sbjct: 149 HDTFAAFGNVLSCKVATDEH-GRSKGYGFVHYETAEAAETAIKAVNGML 196
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + + +L + FA G V S ++ D RS+G+GFV + E A+ AI+
Sbjct: 134 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDE-HGRSKGYGFVHYETAEAAETAIKAV 192
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + R ER + KL+ F + IY N +T +
Sbjct: 193 NGMLLNDKKVYVGY-HISRK-ERQS---KLEEMKAQFTN----IYVKNFDPEVTEEEFMA 243
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
FQ Q G +++ VI GRSRGFGFV FE ++ Q A++ ++
Sbjct: 244 LFQ-QFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVEGLH 286
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N +T +F + G+V SA I D RSRGFGFV +EA++A+
Sbjct: 227 IYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDD-EGRSRGFGFVNFEVHDEAQKAVEGL 285
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPHK-----IYAGNLGWGLT 228
G+ + V+ R ++A +L+ SY Q ++ K +Y NL L
Sbjct: 286 HDLDFKGKKLFVS-----RAQKKAEREQELRQSYEQAKMEKMSKFQGVNLYIKNLEDDLD 340
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
LR F+ + SAKV+ + G S+GFGFV F + ++ A+ MN
Sbjct: 341 DDRLRTEFEPFGSITSAKVMRDE-KGTSKGFGFVCFSSPDEATKAVAEMN 389
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E EQE + E + E+ K + LY+ NL + L F G++
Sbjct: 300 AQKKAEREQELRQSYEQAKMEKMSKF----QGVNLYIKNLEDDLDDDRLRTEFEPFGSIT 355
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
SA+++ D S+GFGFV S +EA +A+ + IG + + V+
Sbjct: 356 SAKVMRDE-KGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 402
>gi|448123237|ref|XP_004204643.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|448125519|ref|XP_004205201.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358249834|emb|CCE72900.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358350182|emb|CCE73461.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
Length = 505
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 102/198 (51%), Gaps = 12/198 (6%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASDE-AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
EQ ++ + +A E ++ + DE A L+VG L +++ L F G V A ++Y
Sbjct: 265 EQSKKRKSDASETQDSKRTKKQDEEPATLFVGRLSWNIDDEWLQREFEPLGGVTGARVIY 324
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV-PRGGERAAMGPKLQ 205
++ + +SRG+G+V + +A+ A++ + G +I GR + ++ E PR P+
Sbjct: 325 EKASGKSRGYGYVDFETKSQAQHALKEYQGREIDGRPINLDMSESKPR-----PSNPRFD 379
Query: 206 NSYQGFVDSP----HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGF 261
+ Q F D P ++ GNL + L D F ++S ++ T + +GFG+
Sbjct: 380 RAKQ-FGDVPSAPSSTLFIGNLSFNAQRDNLYDIFGEYGRVVSCRMPTHPDTQQPKGFGY 438
Query: 262 VTFETAEDLQSALDAMNG 279
+ F T ++ ++AL+A+NG
Sbjct: 439 IEFSTVDEAKAALEALNG 456
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ +L ++F E G V S + T + +GFG++ +V+EAK A+
Sbjct: 395 LFIGNLSFNAQRDNLYDIFGEYGRVVSCRMPTHPDTQQPKGFGYIEFSTVDEAKAALEAL 454
Query: 175 DGSQIGGRTVKVNF 188
+G + GR +++F
Sbjct: 455 NGEYVEGRPCRLDF 468
>gi|125586872|gb|EAZ27536.1| hypothetical protein OsJ_11491 [Oryza sativa Japonica Group]
Length = 257
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
DE L++G+L + M + L F++AG + SA+I+ ++ T + G+GF+ GS A++
Sbjct: 64 DEVRTLWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQ 123
Query: 170 AIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G + G + K+N+ G +R G S + I+ G+L +
Sbjct: 124 VLQGYNGQMMPNGNQVFKLNWATSGAGEKRGDDG------------SDYTIFVGDLASDV 171
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
T L+D F+ + AKV+F+R TGRS+G+GFV F ++ A+ MNG
Sbjct: 172 TDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNG 224
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L + F A +V A++V+DR T RS+G+GFV G ++E A+
Sbjct: 162 IFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTE 221
Query: 174 FDGSQIGGRTVKV 186
+G R +++
Sbjct: 222 MNGQYCSSRPMRI 234
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 90/169 (53%), Gaps = 16/169 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L ++T S L ++F +AG V S + D T RS G+G+V + ++A A+
Sbjct: 18 ASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 77
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
L + + + G+ +++ + + P ++ S I+ NL + ++ L
Sbjct: 78 LLNFTPLNGKPIRIMY---------SHRDPSIRKS------GTANIFIKNLDKSIDNKAL 122
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS K+ + +G+S+G+GFV F+ E Q+A+D +NG++
Sbjct: 123 HDTFSAFGNILSCKIATDP-SGQSKGYGFVQFDNEESAQNAIDKLNGML 170
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +++ NL S+ + +L + F+ G + S +I D + +S+G+GFV + E A+ AI
Sbjct: 106 ANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDP-SGQSKGYGFVQFDNEESAQNAID 164
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGER--AAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+G I + V V + R ER A K N +Y NL T +
Sbjct: 165 KLNGMLINDKQVYVG--QFLRKQERETALNKTKFNN-----------VYVKNLSESTTEE 211
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++ F G+ G++++ V+ G+S+ FGFV FE A+D A++A+NG
Sbjct: 212 DLKNIF-GEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNG 259
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 5/167 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL S T L +F E G + S ++ D +S+ FGFV + ++A EA+
Sbjct: 199 VYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDG-DGKSKCFGFVNFENADDAAEAVEAL 257
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQGL 232
+G + + V + E G + + S + VD +Y NL + L
Sbjct: 258 NGKKFDEKEWYVGKAQKKYERELELKG-RFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKL 316
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ F + S KV+ + +G SRG GFV F T+E+ AL MNG
Sbjct: 317 KELFSEFGTITSCKVMRDP-SGISRGSGFVAFSTSEEASRALTEMNG 362
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+ + E E E + E+ +V + LY+ NL S+ L E+F+E GT+ S +++
Sbjct: 273 QKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVM 332
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D + SRG GFV + EEA A+ +G + + + V
Sbjct: 333 RDP-SGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYV 372
>gi|449454734|ref|XP_004145109.1| PREDICTED: polyadenylate-binding protein RBP45B-like [Cucumis
sativus]
Length = 404
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 19/183 (10%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+ P+ A DE L++G+L Y M + + FA G V+S +++ ++ T +S G+GF+
Sbjct: 55 QPPQSANGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEF 114
Query: 162 GSVEEAKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKI 218
+ A+ ++ ++G+ + G + ++N+ A+ G K Q+ DSP + I
Sbjct: 115 LTRPAAERVLQTYNGTAMPNGAQNFRLNW---------ASAGEKRQD------DSPDYTI 159
Query: 219 YAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ G+L +T L++ F+ + + AKV+ +R TGR++G+GFV F + A+ M
Sbjct: 160 FVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEM 219
Query: 278 NGV 280
NGV
Sbjct: 220 NGV 222
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DR+T R++G+GFV G E A+
Sbjct: 159 IFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTE 218
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKL-QNSYQG-----FVDSPHK--IYAGNLGW 225
+G R +++ P + + G + + SYQ + P+ I+ GNL
Sbjct: 219 MNGVHCSSRPMRIG----PAANKNTSGGQQFSKTSYQNPQGAQNENDPNNTTIFVGNLDA 274
Query: 226 GLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T + LR F GQ G L+ K+ + GFV F + AL +NG
Sbjct: 275 NVTDEHLRQVF-GQYGELVHVKIPVGKRC------GFVQFADRNCAEEALRVLNGT 323
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL ++T L +VF + G E+V+ ++ R GFV A+EA+R+
Sbjct: 267 IFVGNLDANVTDEHLRQVFGQYG-----ELVHVKIPVGKR-CGFVQFADRNCAEEALRVL 320
Query: 175 DGSQIGGRTVKVNFPEVP 192
+G+QIGG+ +++++ P
Sbjct: 321 NGTQIGGQNIRLSWGRSP 338
>gi|365983576|ref|XP_003668621.1| hypothetical protein NDAI_0B03440 [Naumovozyma dairenensis CBS 421]
gi|343767388|emb|CCD23378.1| hypothetical protein NDAI_0B03440 [Naumovozyma dairenensis CBS 421]
Length = 499
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 23/209 (11%)
Query: 79 EDSQDEPETEQEEEEEEEAVEEEEEPKV--AASDEAAR------LYVGNLPYSMTSSSLA 130
+D ++ +TE EE+ E+EEEP V A++ R LYVGNL S+ L
Sbjct: 45 QDGEESNQTEIATEEKGNGEEQEEEPNVVPASATHGGRETSDRVLYVGNLDKSINEDLLK 104
Query: 131 EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
+ F G + +I+ D+ +++ + FV +A A++ +G QI + +K+N+
Sbjct: 105 QYFQVGGQITDVKIMVDK-KNQNVNYAFVEYLKSHDANVALQTLNGIQIENKIIKINW-- 161
Query: 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 250
A + NS F ++ G+L + + L F+ P + A V+++
Sbjct: 162 -------AFQSQQNLNSNDTF-----NLFVGDLNIDVDDETLSSNFKNFPSYIQAHVMWD 209
Query: 251 RYTGRSRGFGFVTFETAEDLQSALDAMNG 279
T RSRG+GFV+F + Q+A+D M G
Sbjct: 210 MQTSRSRGYGFVSFADRDQAQNAMDTMQG 238
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S++ L+VG+L + +L+ F + A +++D T RSRG+GFV+ ++A+
Sbjct: 171 SNDTFNLFVGDLNIDVDDETLSSNFKNFPSYIQAHVMWDMQTSRSRGYGFVSFADRDQAQ 230
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
A+ G +I GR +++N+
Sbjct: 231 NAMDTMQGKEINGRPIRINW 250
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 16/174 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
AS +A LYVG L ++T + L E+F G VAS + D VT RS G+ +V + +
Sbjct: 44 ASVPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADG 103
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ A+ + S I R ++ + + P L+ + QG I+ NL +
Sbjct: 104 ERALEQLNYSLIKNRPCRIMW---------SQRDPALRKTGQG------NIFIKNLDEAI 148
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
++ L D F +LS KV + TGRS+G+GFV +ETAE ++A+ A+NG++
Sbjct: 149 DNKALHDTFAAFGTVLSCKVATDE-TGRSKGYGFVHYETAEAAENAIKAVNGML 201
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA GTV S ++ D T RS+G+GFV + E A+ AI+
Sbjct: 139 IFIKNLDEAIDNKALHDTFAAFGTVLSCKVATDE-TGRSKGYGFVHYETAEAAENAIKAV 197
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + R ER + KL+ F + +Y NL +T +
Sbjct: 198 NGMLLNDKKVYVGH-HISRK-ERQS---KLEEMRAQFTN----LYVKNLDPEVTQDEFIE 248
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ VI G+S+GFGFV FET ++ Q A+D +N
Sbjct: 249 LFK-KYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDELN 291
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL +T E+F + G V SA I D +S+GFGFV + +EA++A+
Sbjct: 232 LYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDE-EGKSKGFGFVNFETHDEAQKAVDEL 290
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPHK-----IYAGNLGWGLT 228
+ ++ G+ + V+ R ++A +L+ SY Q ++ K +Y NL +
Sbjct: 291 NDFELKGKKLFVS-----RAQKKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVD 345
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
LR F+ + S KV+ + G+S+GFGFV F + ++ A+ MN
Sbjct: 346 DDKLRAEFEPFGTITSCKVMRDE-KGQSKGFGFVCFSSPDEATKAVAEMN 394
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKVA--ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE E+ K+ + + LY+ NL + L F GT+ S +++
Sbjct: 306 QKKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDDKLRAEFEPFGTITSCKVM 365
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
D +S+GFGFV S +EA +A+ + IG + + V+
Sbjct: 366 RDE-KGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 407
>gi|115451047|ref|NP_001049124.1| Os03g0174100 [Oryza sativa Japonica Group]
gi|113547595|dbj|BAF11038.1| Os03g0174100, partial [Oryza sativa Japonica Group]
Length = 438
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y + L FA G + S +I+ +++T G+GF+ S E A++
Sbjct: 35 EEVRTLWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEK 94
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ G T ++N+ G R GP H I+ G+L +
Sbjct: 95 VLQTYNGTQMPGTEHTFRLNWASFSSGERRPDAGPD------------HSIFVGDLAPDV 142
Query: 228 TSQGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F+ P + AKV+ + TGRS+G+GFV F + A+ MNG+
Sbjct: 143 TDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGM 196
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 27/190 (14%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D T RS+G+GFV E A+
Sbjct: 133 IFVGDLAPDVTDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTE 192
Query: 174 FDGSQIGGRTVKVN--FPEVPRG-----GERAAMG-------PKLQNSYQGFVDSPHKIY 219
+G R ++++ P+ G G AM P++Q + I+
Sbjct: 193 MNGMYCSTRPMRISAAIPKKTTGSQLQYGAAKAMYPAAGYAVPQVQPVLPDSDPTNTTIF 252
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL +T LR Q + ++I+ + ++ GFV + + + A+ ++G
Sbjct: 253 IGNLDQNVTEDELR-----QICVQFGELIYVKIPA-NKACGFVQYASRASAEEAVQRLHG 306
Query: 280 ------VVRL 283
VVRL
Sbjct: 307 TTIGQQVVRL 316
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++GNL ++T L ++ + G E++Y ++ ++ GFV S A+EA++
Sbjct: 251 IFIGNLDQNVTEDELRQICVQFG-----ELIYVKIP-ANKACGFVQYASRASAEEAVQRL 304
Query: 175 DGSQIGGRTVKVNFPEVP 192
G+ IG + V++++ P
Sbjct: 305 HGTTIGQQVVRLSWGRSP 322
>gi|255639378|gb|ACU19985.1| unknown [Glycine max]
Length = 142
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFV---DSPHK 217
M SVEEA+ A + F+G ++ GR ++VN P E A + DS ++
Sbjct: 1 MSSVEEAEAAAQQFNGYELDGRALRVNSGPPPARNESAPRFRGGSSFGSRGGGPSDSENR 60
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
++ NL WG+ + L+ F+ Q +L A+ I++R +GRSRGFGFVTF + +++ SA+ ++
Sbjct: 61 VHVSNLAWGVDNVALKSLFREQGNVLEARAIYDRESGRSRGFGFVTFSSPDEVNSAIQSL 120
Query: 278 NGV 280
NGV
Sbjct: 121 NGV 123
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SD R++V NL + + + +L +F E G V A +YDR + RSRGFGFVT S +E
Sbjct: 55 SDSENRVHVSNLAWGVDNVALKSLFREQGNVLEARAIYDRESGRSRGFGFVTFSSPDEVN 114
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI+ +G + GR ++V+
Sbjct: 115 SAIQSLNGVDLNGRAIRVSL 134
>gi|449488366|ref|XP_004158014.1| PREDICTED: polyadenylate-binding protein RBP45B-like [Cucumis
sativus]
Length = 260
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 19/183 (10%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+ P+ A DE L++G+L Y M + + FA G V+S +++ ++ T +S G+GF+
Sbjct: 55 QPPQSANGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEF 114
Query: 162 GSVEEAKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKI 218
+ A+ ++ ++G+ + G + ++N+ A+ G K Q+ DSP + I
Sbjct: 115 LTRPAAERVLQTYNGTAMPNGAQNFRLNW---------ASAGEKRQD------DSPDYTI 159
Query: 219 YAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ G+L +T L++ F+ + + AKV+ +R TGR++G+GFV F + A+ M
Sbjct: 160 FVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEM 219
Query: 278 NGV 280
NGV
Sbjct: 220 NGV 222
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DR+T R++G+GFV G E A+
Sbjct: 159 IFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTE 218
Query: 174 FDGSQIGGRTVKV 186
+G R +++
Sbjct: 219 MNGVHCSSRPMRI 231
>gi|449454730|ref|XP_004145107.1| PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis
sativus]
gi|449472157|ref|XP_004153511.1| PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis
sativus]
Length = 408
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 19/183 (10%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+ P+ A DE L++G+L Y M + + FA G V+S +++ ++ T +S G+GF+
Sbjct: 55 QPPQPANGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEF 114
Query: 162 GSVEEAKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKI 218
+ A+ ++ ++G+ + G + ++N+ A+ G K Q+ DSP + I
Sbjct: 115 LTRPAAERVLQTYNGTAMPNGAQNFRLNW---------ASAGEKRQD------DSPDYTI 159
Query: 219 YAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ G+L +T L++ F+ + + AKV+ +R TGR++G+GFV F + A+ M
Sbjct: 160 FVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEM 219
Query: 278 NGV 280
NGV
Sbjct: 220 NGV 222
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 19/175 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DR+T R++G+GFV G E A+
Sbjct: 159 IFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTE 218
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKL-QNSYQGFV-----DSPHK--IYAGNLGW 225
+G R +++ P + + + + SYQ + P+ I+ GNL
Sbjct: 219 MNGVHCSSRPMRIG----PAANKNTSGSQQFSKTSYQNPPGTQNENDPNNTTIFVGNLDS 274
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T + LR F L+ K+ + GFV F + AL +NG
Sbjct: 275 NVTDEHLRQVFSQYGELVHVKIP------AGKRCGFVQFSDRSCAEEALRILNGT 323
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL ++T L +VF++ G E+V+ ++ R GFV A+EA+R+
Sbjct: 267 IFVGNLDSNVTDEHLRQVFSQYG-----ELVHVKIPAGKR-CGFVQFSDRSCAEEALRIL 320
Query: 175 DGSQIGGRTVKVNFPEVP 192
+G+ IGG+ +++++ P
Sbjct: 321 NGTPIGGQNIRLSWGRSP 338
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T S L E F++AG V S + D T RS G+G+V + ++A A+
Sbjct: 41 LYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 100
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + GR ++V + + P L+ S G I+ NL + + L +
Sbjct: 101 NFMALNGRAIRVMY---------SVRDPSLRKSGVG------NIFIKNLDKSIDHKALHE 145
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+S+G+GFV ++T E Q A+D +NG++
Sbjct: 146 TFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQRAIDKLNGML 191
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 19/168 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ +L E F+ G + S ++ D + +S+G+GFV + E A+ AI
Sbjct: 129 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQRAIDKL 187
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGP---KLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + + V V GP KLQ G +Y NL L+ +
Sbjct: 188 NGMLLNDKQVYV--------------GPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEE 233
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F G+ G+ ++ VI G+S+GFGFV FE ++D A+DA+NG
Sbjct: 234 LNKVF-GEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNG 280
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL S++ L +VF E G S I+ D +S+GFGFV + ++A A+
Sbjct: 220 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVDAL 278
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQG 231
+G + V + + ER + K + S + D +Y NL +T
Sbjct: 279 NGKTFDDKEWFVG--KAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 336
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR+ F + S KV+ + TG SRG GFV F T E+ A+ MNG
Sbjct: 337 LREHFAPFGTITSCKVMRDP-TGVSRGSGFVAFSTPEEASRAITEMNG 383
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
+ +++ E E E ++ E+ A+D + + LYV NL S+T L E FA GT+ S +
Sbjct: 292 KAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCK 351
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI 179
++ D T SRG GFV + EEA AI +G I
Sbjct: 352 VMRDP-TGVSRGSGFVAFSTPEEASRAITEMNGKMI 386
>gi|337278094|ref|YP_004617565.1| RNA-binding protein [Ramlibacter tataouinensis TTB310]
gi|334729170|gb|AEG91546.1| Candidate RNA-binding protein [Ramlibacter tataouinensis TTB310]
Length = 95
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS S + + F++ GTV SA++V DR T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYSFGDSEMQQAFSQFGTVGSAKVVMDRDTGRSKGFGFVEMGSAAEAQSAIQG 63
Query: 174 FDGSQIGGRTVKVN--FPEVPR-GGERAA 199
G Q GGR + VN P PR GG AA
Sbjct: 64 MHGQQHGGRDLVVNEARPMEPRTGGSGAA 92
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + ++ AF + SAKV+ +R TGRS+GFGFV +A + QSA+
Sbjct: 3 NKLYVGNLPYSFGDSEMQQAFSQFGTVGSAKVVMDRDTGRSKGFGFVEMGSAAEAQSAIQ 62
Query: 276 AMNG 279
M+G
Sbjct: 63 GMHG 66
>gi|357113824|ref|XP_003558701.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 418
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 89/174 (51%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L + + L FA G V S +I+ ++VT+ G+GF+ S E A++
Sbjct: 14 EEVRTLWIGDLQFWADEAYLYNCFAHTGEVQSVKIIRNKVTNLPEGYGFIEFISHEAAEK 73
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ G T ++N+ G R GP H I+ G+L +
Sbjct: 74 VLQTYNGAQMPGSEHTFRLNWASFSSGERRPDAGPD------------HSIFVGDLAPDV 121
Query: 228 TSQGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F+ + AKV+ + TGRS+G+GFV F + A+ MNGV
Sbjct: 122 TDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKTRAMSEMNGV 175
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 27/190 (14%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D T RS+G+GFV E A+
Sbjct: 112 IFVGDLAPDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKTRAMSE 171
Query: 174 FDGSQIGGRTVKVN--FPEVPRG-----GERAAMGP----KLQNSYQGFVDSP---HKIY 219
+G R ++++ P+ G G AM P + + DS I+
Sbjct: 172 MNGVYCSTRPMRISAAIPKKSSGSQLQYGTAKAMYPAAAYAVPQAQPALPDSDLTNTTIF 231
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL T + LR L+ K+ +G GFV + + + A+ ++G
Sbjct: 232 IGNLDPNATEEELRQLCVQFGELIYVKIPV------GKGCGFVQYASRASAEEAVQRLHG 285
Query: 280 ------VVRL 283
VVRL
Sbjct: 286 TMIGQQVVRL 295
Score = 37.0 bits (84), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 101 EEEPKVAASD-EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+ +P + SD +++GNL + T L ++ + G E++Y ++ +G GFV
Sbjct: 215 QAQPALPDSDLTNTTIFIGNLDPNATEEELRQLCVQFG-----ELIYVKIP-VGKGCGFV 268
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192
S A+EA++ G+ IG + V++++ P
Sbjct: 269 QYASRASAEEAVQRLHGTMIGQQVVRLSWGRSP 301
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L ++T + L E+F G VAS + D VT RS G+ +V + + + A+
Sbjct: 6 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 65
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ S I GR ++ + + P L+ + QG I+ NL + ++
Sbjct: 66 EQLNYSLIKGRACRIMW---------SQRDPALRKTGQG------NIFIKNLDEQIDNKA 110
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + GRS+G+GFV +ETAE ++A+ A+NG++
Sbjct: 111 LHDTFAAFGNVLSCKVATDEH-GRSKGYGFVHYETAEAAETAIKAVNGML 159
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T ++F G + SA + D +SRGFGFV + EEA A+
Sbjct: 190 IYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDD-EGKSRGFGFVNFDTHEEAHAAVEAL 248
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
S + GR + V E+ R E+A M + + YQG +Y NL
Sbjct: 249 HDSDVKGRKLFVARAQKKAEREEELRRSYEQAKM--EKMSKYQGV-----NLYIKNLEDD 301
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + LR F+ + SAKV+ + G S+GFGFV F + ++ A+ MN
Sbjct: 302 IDDERLRGEFEPFGNITSAKVMRDE-KGISKGFGFVCFSSPDEATKAVAEMN 352
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + + +L + FA G V S ++ D RS+G+GFV + E A+ AI+
Sbjct: 97 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDE-HGRSKGYGFVHYETAEAAETAIKAV 155
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + R ER + +++N + IY N+ +T +
Sbjct: 156 NGMLLNDKKVYVGH-HISRK-ERQSKIEEMKNQFT-------NIYVKNVDPEVTQEEFVQ 206
Query: 235 AFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ P G +++ V+ G+SRGFGFV F+T E+ +A++A++
Sbjct: 207 LFE--PFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVEALH 249
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE E+ K+ + + LY+ NL + L F G + SA+++
Sbjct: 264 QKKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDIDDERLRGEFEPFGNITSAKVM 323
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
D S+GFGFV S +EA +A+ + IG + + V+
Sbjct: 324 RDE-KGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 365
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G VAS + D VT RS G+ +V S + ++A+
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 114 EELNYTLIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDVAIDNKA 158
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + TG S+G+GFV +ET E Q A+ +NG++
Sbjct: 159 LHDTFAAFGNILSCKVAQDE-TGSSKGYGFVHYETDEAAQQAIKHVNGML 207
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D T S+G+GFV + E A++AI+
Sbjct: 145 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-TGSSKGYGFVHYETDEAAQQAIKHV 203
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K + F + +Y N+ +T R
Sbjct: 204 NGMLLNEKKVYVGH-HIPKKDRQS----KFEEMKANFTN----VYIKNIAPDVTDDQFRV 254
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ G +++ I G+SRGFGFV F T E +A++ +N
Sbjct: 255 LFEAH-GDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAVEELN 297
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ +T +F G V S+ I D +SRGFGFV + E A A+
Sbjct: 238 VYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARD-PDGKSRGFGFVNFTTHEAASAAVEEL 296
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+ G+ + V R ++ +L+ SY+ ++ K +Y NL +
Sbjct: 297 NNKDFHGQELYVG-----RAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVD 351
Query: 229 SQGLRDAFQGQPGLLSAKVI 248
+ LR F + SAKV+
Sbjct: 352 DEKLRTMFTEFGPITSAKVM 371
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 16/174 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V S E+
Sbjct: 42 AHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDG 101
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++A+ + + I G+ ++ + + P L+ + QG ++ NL +
Sbjct: 102 EKALEELNYTVIKGKPCRIMW---------SQRDPALRKTGQG------NVFIKNLDHAI 146
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
++ L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 147 DNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETAEAANNAIKHVNGML 199
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL +++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 137 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETAEAANNAIKHV 195
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ER + K + F + IY N+ +T RD
Sbjct: 196 NGMLLNEKKVFVGH-HIPKK-ERMS---KFEEMKANFTN----IYVKNIDLDVTDDEFRD 246
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + G+SRGFGFV + E A++ +N
Sbjct: 247 LFEKHGDITSASIARDD-QGKSRGFGFVNYIKHEAASVAVETLN 289
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 16/142 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T ++F + G + SA I D +SRGFGFV E A A+
Sbjct: 230 IYVKNIDLDVTDDEFRDLFEKHGDITSASIARDD-QGKSRGFGFVNYIKHEAASVAVETL 288
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ ++ G+ + V E+ + E A + + Q+ YQG +Y NL
Sbjct: 289 NDTEFHGQKLYVGRAQKKHEREEELRKQYEAARL--EKQSKYQGV-----NLYIKNLNDD 341
Query: 227 LTSQGLRDAFQGQPGLLSAKVI 248
+ + LRD F + SAKV+
Sbjct: 342 VDDEKLRDMFTPFGTITSAKVM 363
>gi|407005316|gb|EKE21467.1| RNA-binding protein, partial [uncultured bacterium]
Length = 76
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 55/75 (73%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGNLPY++ + L ++FA+AG V SA I+ D+ T RS+GFGFV M + EEA +AI
Sbjct: 2 AKKLYVGNLPYTLKDADLNQLFAQAGAVESAVIINDKATGRSKGFGFVEMSADEEATKAI 61
Query: 172 RLFDGSQIGGRTVKV 186
+FDG ++ GR + V
Sbjct: 62 EMFDGQELEGRKLTV 76
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
K+Y GNL + L L F + SA +I ++ TGRS+GFGFV E+ A++
Sbjct: 3 KKLYVGNLPYTLKDADLNQLFAQAGAVESAVIINDKATGRSKGFGFVEMSADEEATKAIE 62
Query: 276 AMNG 279
+G
Sbjct: 63 MFDG 66
>gi|367016631|ref|XP_003682814.1| hypothetical protein TDEL_0G02360 [Torulaspora delbrueckii]
gi|359750477|emb|CCE93603.1| hypothetical protein TDEL_0G02360 [Torulaspora delbrueckii]
Length = 402
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 31/209 (14%)
Query: 87 TEQEEEEEEEAVEEE--------EEPKVAASD--EAAR------LYVGNLPYSMTSSSLA 130
+EQE E+ VE E EEP V ++ + R LYVGNL S+ L
Sbjct: 2 SEQENLEQNPTVESEVPASETISEEPSVVPANAIKGGRETSDKVLYVGNLDTSINEEILK 61
Query: 131 EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
+ F G +A+ +I+ D+ + + + FV +A A++ +G QI VK+N+
Sbjct: 62 QYFQVGGPIANVKIMVDK-NNSNANYAFVEYFQSHDANIALQTLNGKQIENNVVKINW-- 118
Query: 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 250
Q+ ++ ++ G+L + + LR+AF+ P L V+++
Sbjct: 119 ------------AFQSQQVSPDEATFNLFVGDLNVDVDDETLRNAFKEFPTYLQGHVMWD 166
Query: 251 RYTGRSRGFGFVTFETAEDLQSALDAMNG 279
TG SRG+GFV+F + E+ Q A+DAM G
Sbjct: 167 MQTGGSRGYGFVSFGSQEEAQKAMDAMQG 195
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 107 AASDEAA-RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+ DEA L+VG+L + +L F E T +++D T SRG+GFV+ GS E
Sbjct: 125 VSPDEATFNLFVGDLNVDVDDETLRNAFKEFPTYLQGHVMWDMQTGGSRGYGFVSFGSQE 184
Query: 166 EAKEAIRLFDGSQIGGRTVKVNF 188
EA++A+ G ++ GR +++N+
Sbjct: 185 EAQKAMDAMQGHELNGRPLRINW 207
>gi|388503916|gb|AFK40024.1| unknown [Medicago truncatula]
Length = 324
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 9/166 (5%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V NLP+S++ + ++F + GTV EI+ + + +G+ FVTM S E A+ A+ F
Sbjct: 98 LIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSK-DGKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ ++I GR ++V F + P+ ++ + IYA NL W S LRD
Sbjct: 157 NATEISGRILRVEFA-------KGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRD 209
Query: 235 AF-QGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + +SA+V+F+ G+S G+GFV++ T E+ ++A+ A+ G
Sbjct: 210 IFTENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAIFALQG 255
>gi|406602740|emb|CCH45698.1| Nuclear localization sequence-binding protein [Wickerhamomyces
ciferrii]
Length = 467
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 97/188 (51%), Gaps = 10/188 (5%)
Query: 98 VEEEEEP--KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRG 155
VEEE P K +E A L+VG L +S+ L F G V SA ++++R T +SRG
Sbjct: 218 VEEEAAPAKKQKVDEEPATLFVGRLSWSIDDEWLKREFEPLGGVISARVIFERATGKSRG 277
Query: 156 FGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP 215
+G+V S A++A++ + G +I GR + ++ G+ A + + F D+P
Sbjct: 278 YGYVDFDSKSAAEKALKEYQGREIDGRPINLDMST----GKPHASNNRSNDRASKFGDTP 333
Query: 216 ----HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
++ GNL + L + F ++S ++ T + +GFG+V + + ++ +
Sbjct: 334 SAPSDTLFLGNLSFNANRDNLSEVFSEYGSIVSVRIPTHPDTEQPKGFGYVQYGSVDEAK 393
Query: 272 SALDAMNG 279
+AL+A+NG
Sbjct: 394 AALEALNG 401
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 8/94 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ +L+EVF+E G++ S I T++ +GFG+V GSV+EAK A+
Sbjct: 340 LFLGNLSFNANRDNLSEVFSEYGSIVSVRIPTHPDTEQPKGFGYVQYGSVDEAKAALEAL 399
Query: 175 DGSQIGGRTVKVNFPEVPR-------GGERAAMG 201
+G I GR V+++F PR GG+R + G
Sbjct: 400 NGEYIEGRPVRLDF-SAPRDNSNRSFGGDRKSFG 432
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 90/169 (53%), Gaps = 16/169 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L ++T S L ++F +AG V S + D T RS G+G+V + ++A A+
Sbjct: 18 ASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 77
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
L + + + G+ +++ + + P ++ S I+ NL + ++ L
Sbjct: 78 LLNFTPLNGKPIRIMY---------SHRDPSIRKS------GTANIFIKNLDKSIDNKAL 122
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS K+ + +G+S+G+GFV F+ E Q+A+D +NG++
Sbjct: 123 HDTFSAFGNILSCKIATDP-SGQSKGYGFVQFDNEESAQNAIDKLNGML 170
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +++ NL S+ + +L + F+ G + S +I D + +S+G+GFV + E A+ AI
Sbjct: 106 ANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDP-SGQSKGYGFVQFDNEESAQNAID 164
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGER--AAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+G I + V V + R ER A K N +Y NL T +
Sbjct: 165 KLNGMLINDKQVYVG--QFLRKQERETALNKTKFNN-----------VYVKNLSESTTEE 211
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++ F G+ G++++ V+ G+S+ FGFV FE A+D A++A+NG
Sbjct: 212 DLKNIF-GEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNG 259
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 5/167 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL S T L +F E G + S ++ D +S+ FGFV + ++A EA+
Sbjct: 199 VYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDG-DGKSKCFGFVNFENADDAAEAVEAL 257
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQGL 232
+G + + V + E G + + S + VD +Y NL + L
Sbjct: 258 NGKKFDEKEWYVGKAQKKYERELELKG-RFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKL 316
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ F + S KV+ + +G SRG GFV F T+E+ AL MNG
Sbjct: 317 KELFSEFGTITSCKVMRDP-SGISRGSGFVAFSTSEEASRALTEMNG 362
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+ + E E E + E+ +V + LY+ NL S+ L E+F+E GT+ S +++
Sbjct: 273 QKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVM 332
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D + SRG GFV + EEA A+ +G + + + V
Sbjct: 333 RDP-SGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYV 372
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T S L E F +AG V S + D T RS G+G+V + ++A A+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + GR ++V + + P L+ S G I+ NL + + L +
Sbjct: 107 NFMALNGRAIRVMY---------SVRDPSLRKSGVG------NIFIKNLDKSIDHKALHE 151
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+S+G+GFV ++T E Q A+D +NG++
Sbjct: 152 TFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGML 197
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 19/168 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ +L E F+ G + S ++ D + +S+G+GFV + E A+ AI
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGP---KLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + + V V GP KLQ G +Y NL L+ +
Sbjct: 194 NGMLLNDKQVYV--------------GPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEE 239
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F G+ G+ ++ VI G+S+GFGFV FE ++D A+DA+NG
Sbjct: 240 LNKVF-GEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNG 286
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL S++ L +VF E G S I+ D +S+GFGFV + ++A A+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVDAL 284
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQG 231
+G + V + + ER + K + S + D +Y NL +T
Sbjct: 285 NGKTFDDKEWFVG--KAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR+ F + S KV+ + +G SRG GFV F T E+ A+ MNG
Sbjct: 343 LREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNG 389
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
+ +++ E E E ++ E+ A+D + + LYV NL S+T L E FA GT+ S +
Sbjct: 298 KAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCK 357
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI 179
++ D + SRG GFV + EEA AI +G I
Sbjct: 358 VMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMI 392
>gi|444316792|ref|XP_004179053.1| hypothetical protein TBLA_0B07170 [Tetrapisispora blattae CBS 6284]
gi|387512093|emb|CCH59534.1| hypothetical protein TBLA_0B07170 [Tetrapisispora blattae CBS 6284]
Length = 470
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 16/165 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL S+ SL + F G +A+ +I+ D+ ++ + FV +A A++
Sbjct: 85 LYVGNLDKSINEDSLKQYFQVGGPIANVKIIVDK-NNKYCNYAFVEYLKHHDANVALQTL 143
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G I + VK+N+ Q S Q D ++ G+L + + L
Sbjct: 144 NGKHIEKKIVKINW--------------AFQ-SQQSSNDDTFNLFIGDLNIDVNDESLTA 188
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF+ P + A V+++ TGRSRG+GF +F T D Q A+D M G
Sbjct: 189 AFKDFPSFVQAHVMWDMQTGRSRGYGFASFSTQNDAQLAMDQMQG 233
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 47/82 (57%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
+++D+ L++G+L + SL F + + A +++D T RSRG+GF + + +
Sbjct: 164 SSNDDTFNLFIGDLNIDVNDESLTAAFKDFPSFVQAHVMWDMQTGRSRGYGFASFSTQND 223
Query: 167 AKEAIRLFDGSQIGGRTVKVNF 188
A+ A+ G ++ GR +++N+
Sbjct: 224 AQLAMDQMQGKELNGRPIRINW 245
>gi|356555656|ref|XP_003546146.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 411
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 98/179 (54%), Gaps = 16/179 (8%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A++DE L++G+L Y M + L FA G V+S +++ ++ T +S G+GF+ S
Sbjct: 61 ASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVSSVKVIRNKQTSQSEGYGFIEFNSRAG 120
Query: 167 AKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNL 223
A+ ++ ++G+ + GG++ ++N+ GER+ DSP + I+ G+L
Sbjct: 121 AERILQTYNGAIMPNGGQSFRLNWATF-SAGERSRQD-----------DSPDYTIFVGDL 168
Query: 224 GWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+T L++ F+ + + AKV+ +R TGR++G+GFV F + A+ M GV+
Sbjct: 169 AADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSEESEQMRAMTEMQGVL 227
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 20/177 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DR+T R++G+GFV E A+
Sbjct: 163 IFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSEESEQMRAMTE 222
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-----QGFV--DSPHK--IYAGNLG 224
G R +++ P + A + + SY QG + P+ I+ GNL
Sbjct: 223 MQGVLCSTRPMRIG----PASNKTPATQSQPKASYLNSQPQGSQNENDPNNTTIFVGNLD 278
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+T LR F L+ K+ + GFV F + AL +NG +
Sbjct: 279 PNVTDDHLRQVFSQYGELVHVKIP------AGKRCGFVQFADRSCAEEALRVLNGTL 329
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL ++T L +VF++ G E+V+ ++ R GFV A+EA+R+
Sbjct: 272 IFVGNLDPNVTDDHLRQVFSQYG-----ELVHVKIPAGKR-CGFVQFADRSCAEEALRVL 325
Query: 175 DGSQIGGRTVKVNFPEVP 192
+G+ +GG+ V++++ P
Sbjct: 326 NGTLLGGQNVRLSWGRSP 343
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 14/169 (8%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A L+V NL +S++SS L +F++ GT+ S ++ + RS+GFGFV S + A A
Sbjct: 105 ANLFVKNLDFSISSSCLESIFSKYGTILSCKVAGE--NGRSKGFGFVQFESQDSALVAQT 162
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ +GG+ K++ + + ER A P + F + +Y NL +T GL
Sbjct: 163 ALHDTMLGGK--KLHVCKFVKKTERTAAAP-----CEVFTN----LYVKNLDETITEDGL 211
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+D F G +S+ I + G+S+ FGFV F++ +D + A+D MNG V
Sbjct: 212 KDMFS-VVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMNGSV 259
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 94/188 (50%), Gaps = 13/188 (6%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
V++ E A + LYV NL ++T L ++F+ G V+S I+ D +S+ FG
Sbjct: 180 VKKTERTAAAPCEVFTNLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDH-EGKSKHFG 238
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD---- 213
FV S ++AK+A+ + +GS IG +T+ V + R ER + L+ Y+ +
Sbjct: 239 FVNFKSPDDAKKAVDVMNGSVIGSKTLFVG--KAQRKSERTMI---LKQEYKDLHNRSTE 293
Query: 214 --SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
+Y NL + + L++ F +LS KVI G S+ FGFV F + E+
Sbjct: 294 KLRASNLYVKNLNVDIDDKKLKEVFSAYGKILSVKVICHN-DGTSKQFGFVCFASPEEAN 352
Query: 272 SALDAMNG 279
AL A+NG
Sbjct: 353 KALVALNG 360
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 21/175 (12%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L F G ++S + R+T +S + +V + S +A A+
Sbjct: 17 ASLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALG 76
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
L + + + G+ +++ + +R K GF + ++ NL + ++S L
Sbjct: 77 LLNHTNLKGKPMRIMWC------QRDPFARK-----TGFAN----LFVKNLDFSISSSCL 121
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED---LQSAL-DAMNGVVRL 283
F +LS KV E GRS+GFGFV FE+ + Q+AL D M G +L
Sbjct: 122 ESIFSKYGTILSCKVAGE--NGRSKGFGFVQFESQDSALVAQTALHDTMLGGKKL 174
>gi|12583812|gb|AAG59664.1|AC084319_22 putative RNA binding protein [Oryza sativa Japonica Group]
gi|108709397|gb|ABF97192.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215678704|dbj|BAG95141.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 402
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
DE L++G+L + M + L F++AG + SA+I+ ++ T + G+GF+ GS A++
Sbjct: 64 DEVRTLWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQ 123
Query: 170 AIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G + G + K+N+ G +R G S + I+ G+L +
Sbjct: 124 VLQGYNGQMMPNGNQVFKLNWATSGAGEKRGDDG------------SDYTIFVGDLASDV 171
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
T L+D F+ + AKV+F+R TGRS+G+GFV F ++ A+ MNG
Sbjct: 172 TDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNG 224
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L + F A +V A++V+DR T RS+G+GFV G ++E A+
Sbjct: 162 IFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTE 221
Query: 174 FDGSQIGGRTVKVNFPEVPR--GGERAAMGPKLQNSYQGFVDS-PHK--IYAGNLGWGLT 228
+G R +++ + GG++ QN+ DS P+ ++ G L +T
Sbjct: 222 MNGQYCSSRPMRIGPASNKKNIGGQQQPSA-TYQNTQGTDSDSDPNNTTVFVGGLDPSVT 280
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L+ AF L+ K+ + GFV + + A+ +NG
Sbjct: 281 DEVLKQAFSPYGELVYVKIPVGKRC------GFVQYSNRASAEEAIRMLNG 325
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L S+T L + F+ G E+VY ++ R GFV + A+EAIR+
Sbjct: 270 VFVGGLDPSVTDEVLKQAFSPYG-----ELVYVKIPVGKR-CGFVQYSNRASAEEAIRML 323
Query: 175 DGSQIGGRTVKVNFPEVP 192
+GSQ+GG+++++++ P
Sbjct: 324 NGSQLGGQSIRLSWGRSP 341
>gi|108709398|gb|ABF97193.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 406
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
DE L++G+L + M + L F++AG + SA+I+ ++ T + G+GF+ GS A++
Sbjct: 64 DEVRTLWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQ 123
Query: 170 AIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G + G + K+N+ G +R G S + I+ G+L +
Sbjct: 124 VLQGYNGQMMPNGNQVFKLNWATSGAGEKRGDDG------------SDYTIFVGDLASDV 171
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
T L+D F+ + AKV+F+R TGRS+G+GFV F ++ A+ MNG
Sbjct: 172 TDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNG 224
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L + F A +V A++V+DR T RS+G+GFV G ++E A+
Sbjct: 162 IFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTE 221
Query: 174 FDGSQIGGRTVKVNFPEVPR--GGERAAMGPKLQNSYQGFVDS-PHK--IYAGNLGWGLT 228
+G R +++ + GG++ QN+ DS P+ ++ G L +T
Sbjct: 222 MNGQYCSSRPMRIGPASNKKNIGGQQQPSA-TYQNTQGTDSDSDPNNTTVFVGGLDPSVT 280
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L+ AF L+ K+ + GFV + + A+ +NG
Sbjct: 281 DEVLKQAFSPYGELVYVKIPVGKRC------GFVQYSNRASAEEAIRMLNG 325
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L S+T L + F+ G E+VY ++ R GFV + A+EAIR+
Sbjct: 270 VFVGGLDPSVTDEVLKQAFSPYG-----ELVYVKIPVGKR-CGFVQYSNRASAEEAIRML 323
Query: 175 DGSQIGGRTVKVNFPEVP 192
+GSQ+GG+++++++ P
Sbjct: 324 NGSQLGGQSIRLSWGRSP 341
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 17/182 (9%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ + E+ V AS AA LYVG+L +T + L + F+E T+ SA + D T +S +G
Sbjct: 1 MTDSEKDAVPAS-PAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYG 59
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK 217
+V + S +EA AI L + S + G+ ++V + ++ G
Sbjct: 60 YVNLSSHQEAIRAIELKNHSSLNGKVIRVMWLSRDADARKSGKG---------------N 104
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
++ NL + + GL D FQ +LS+K I G+S+GFG++ F++ E A+ M
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSK-IARSEDGKSKGFGYIQFDSEESANVAIQKM 163
Query: 278 NG 279
NG
Sbjct: 164 NG 165
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL +T L E F+ G + S I D +S+GFGFV S ++A+ A+
Sbjct: 196 LYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDE-NGQSKGFGFVNYDSPDDARRAMEAM 254
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY--QGFVDSPHKIYAGNLGWGLTSQGL 232
DGSQ G + + V R ++ L + + +G IY N+ + + L
Sbjct: 255 DGSQFGSKIL-----YVARAQKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSVGDEEL 309
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
RD F +LSAKV+ + G S+GFGFV F T + ++ NG
Sbjct: 310 RDHFSACGEVLSAKVMRDD-KGTSKGFGFVCFSTVVEAFKSMSCFNG 355
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 15/166 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVTMGSVEEAKEAIRL 173
++V NL S+ + L ++F + G + S++I R D +S+GFG++ S E A AI+
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIA--RSEDGKSKGFGYIQFDSEESANVAIQK 162
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+GS + + + V + R ER+ P L + +Y NL +T + L
Sbjct: 163 MNGSTVRDKQIYVG--KFIRKSERSL--PDLDAKFT-------NLYVKNLDPVVTEKHLG 211
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F G + + I + G+S+GFGFV +++ +D + A++AM+G
Sbjct: 212 EKFS-SFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDG 256
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T S L +VF + G V S + D T RS G+G+V S ++A A+ +
Sbjct: 39 LYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDIL 98
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + +++ + + P ++ S G I+ NL + + L D
Sbjct: 99 NFTPFNNKPIRIMY---------SHRDPSIRKSGTG------NIFIKNLDKTIDHKALHD 143
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+SRG+GFV F+ E Q+A+D +NG++
Sbjct: 144 TFSSFGNILSCKVATDS-SGQSRGYGFVQFDNEEAAQNAIDKLNGML 189
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 14/165 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ +L + F+ G + S ++ D + +SRG+GFV + E A+ AI
Sbjct: 127 IFIKNLDKTIDHKALHDTFSSFGNILSCKVATDS-SGQSRGYGFVQFDNEEAAQNAIDKL 185
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V R ER + K N+ +Y NL T + L++
Sbjct: 186 NGMLLNDKQVYVG--HFLRKHERDSASNKKFNN----------VYVKNLSESTTEEDLKN 233
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F G+ G +++ VI G+S+ FGFV FE + A++++NG
Sbjct: 234 IF-GEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLNG 277
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 7/176 (3%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A++ + +YV NL S T L +F E G + SA I+ D +S+ FGFV + +
Sbjct: 209 ASNKKFNNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRD-ADGKSKCFGFVNFENTDA 267
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH--KIYAGNL 223
A +A+ +G +I + V + + ER + + + S + VD +Y NL
Sbjct: 268 AAKAVESLNGKKIDDKEWYVG--KAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNL 325
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ + L++ F G++++ + +G SRG GFV F T E+ AL MNG
Sbjct: 326 DDSISDENLKELFSDF-GMITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNG 380
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 71 SFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSS 128
S +G ++ + + +++ E E E + E+ A D + LY+ NL S++ +
Sbjct: 274 SLNGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDEN 333
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
L E+F++ G + S +++ D + SRG GFV + EEA A+ +G + + + V
Sbjct: 334 LKELFSDFGMITSCKVMRDP-SGISRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYV 390
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
P +Y G+L +T L D F ++S +V + T RS G+G+V + + +D AL
Sbjct: 36 PTSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARAL 95
Query: 275 DAMN 278
D +N
Sbjct: 96 DILN 99
>gi|218193173|gb|EEC75600.1| hypothetical protein OsI_12307 [Oryza sativa Indica Group]
Length = 406
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
DE L++G+L + M + L F++AG + SA+I+ ++ T + G+GF+ GS A++
Sbjct: 64 DEVRTLWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQ 123
Query: 170 AIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G + G + K+N+ G +R G S + I+ G+L +
Sbjct: 124 VLQGYNGQMMPNGNQVFKLNWATSGAGEKRGDDG------------SDYTIFVGDLASDV 171
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
T L+D F+ + AKV+F+R TGRS+G+GFV F ++ A+ MNG
Sbjct: 172 TDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNG 224
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L + F A +V A++V+DR T RS+G+GFV G ++E A+
Sbjct: 162 IFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTE 221
Query: 174 FDGSQIGGRTVKVNFPEVPR--GGERAAMGPKLQNSYQGFVDS-PHK--IYAGNLGWGLT 228
+G R +++ + GG++ QN+ DS P+ ++ G L +T
Sbjct: 222 MNGQYCSSRPMRIGPASNKKNIGGQQQPSA-TYQNTQGTDSDSDPNNTTVFVGGLDPSVT 280
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L+ AF L+ K+ + GFV + + A+ +NG
Sbjct: 281 DEVLKQAFSPYGELVYVKIPVGKRC------GFVQYSNRASAEEAIRMLNG 325
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L S+T L + F+ G E+VY ++ R GFV + A+EAIR+
Sbjct: 270 VFVGGLDPSVTDEVLKQAFSPYG-----ELVYVKIPVGKR-CGFVQYSNRASAEEAIRML 323
Query: 175 DGSQIGGRTVKVNFPEVP 192
+GSQ+GG+++++++ P
Sbjct: 324 NGSQLGGQSIRLSWGRSP 341
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++T S L +VF + G V S + D T RS G+G+V + ++A A+ +
Sbjct: 14 LYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 73
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + + +++ + ++ M I+ NL G+ + L D
Sbjct: 74 NFTPLNNKPIRIMYSHRDPSIRKSGMA---------------NIFIKNLDKGIDHKALHD 118
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+S+G+GFV F++ E Q+A+D +NG++
Sbjct: 119 TFSSFGNILSCKVATDA-SGQSKGYGFVQFDSEEAAQNAIDKLNGML 164
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 13/167 (7%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +++ NL + +L + F+ G + S ++ D + +S+G+GFV S E A+ AI
Sbjct: 100 ANIFIKNLDKGIDHKALHDTFSSFGNILSCKVATD-ASGQSKGYGFVQFDSEEAAQNAID 158
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + + V V + + A K N ++ NL T + L
Sbjct: 159 KLNGMLVNDKQVYVGHFLRKQDRDGALYSIKFNN-----------VFVKNLAESTTDEEL 207
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ F + G +++ V+ G+S+ FGFV FE+A+D A++A+NG
Sbjct: 208 KNIF-AEHGAITSAVVMRDADGKSKCFGFVNFESADDAAKAVEALNG 253
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S T L +FAE G + SA ++ D +S+ FGFV S ++A +A+
Sbjct: 193 VFVKNLAESTTDEELKNIFAEHGAITSAVVMRD-ADGKSKCFGFVNFESADDAAKAVEAL 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQG 231
+G +I G V + + ER + + + S + VD +Y NL + +
Sbjct: 252 NGKKIDGEEWYVG--KAQKKSERELELKGRFEQSMKETVDKFQGLNLYIKNLDDSINDEK 309
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++ F + S KV+ + +G SRG GFV F T E+ AL MNG
Sbjct: 310 LKELFSDFGAITSCKVMRDP-SGISRGSGFVAFSTPEEASRALAEMNG 356
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
P +Y G+L + +T L D F ++S +V + T RS G+G+V + +D AL
Sbjct: 11 PTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAL 70
Query: 275 DAMN 278
D +N
Sbjct: 71 DVLN 74
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL S+ L E+F++ G + S +++ D + SRG GFV + EEA A+
Sbjct: 296 LYIKNLDDSINDEKLKELFSDFGAITSCKVMRDP-SGISRGSGFVAFSTPEEASRALAEM 354
Query: 175 DGSQIGGRTVKV 186
+G + + + V
Sbjct: 355 NGKMLISKPLYV 366
>gi|444318191|ref|XP_004179753.1| hypothetical protein TBLA_0C04360 [Tetrapisispora blattae CBS 6284]
gi|387512794|emb|CCH60234.1| hypothetical protein TBLA_0C04360 [Tetrapisispora blattae CBS 6284]
Length = 403
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 17/193 (8%)
Query: 94 EEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
++E E ++ K S+E A ++VG L +S+ L F G V SA ++Y++ TDRS
Sbjct: 142 DDEESSESKKQKPDESEEPATIFVGRLSWSIDDEWLKTEFEPIGGVLSARVIYEKGTDRS 201
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF---PEVPRGGERAAMGPKLQNSYQG 210
RG+G+V + A++AI+ G +I GR + + GG+RA +
Sbjct: 202 RGYGYVDFKNKTFAEKAIKEMQGKEIDGRPINCDMSTSKPASNGGDRA----------KK 251
Query: 211 FVDSPHK----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266
F D+P + ++ GNL + + + F ++S ++ T + +GFG+V +
Sbjct: 252 FGDTPSEPSETLFLGNLSFDADRDNIYEVFSKYGEIISVRIPTHPETEQPKGFGYVQYGD 311
Query: 267 AEDLQSALDAMNG 279
E + ALDA+ G
Sbjct: 312 VESAKKALDALQG 324
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S+ + L++GNL + ++ EVF++ G + S I T++ +GFG+V G VE AK
Sbjct: 257 SEPSETLFLGNLSFDADRDNIYEVFSKYGEIISVRIPTHPETEQPKGFGYVQYGDVESAK 316
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
+A+ G I R V+++F PR
Sbjct: 317 KALDALQGEYINNRPVRLDF-STPR 340
>gi|255949670|ref|XP_002565602.1| Pc22g16890 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592619|emb|CAP98977.1| Pc22g16890 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 724
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 25/182 (13%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V +LP S T+ SLAE F+++ + A +V D+ T S+GFGFVT VE+A+ A++
Sbjct: 38 LFVRSLPTSATTESLAEYFSQSYIIKHAVVVCDKETKASKGFGFVTFADVEDAESALKEL 97
Query: 175 DGSQIGGRTVKVNFPE-------------VPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+GS+ G+ ++V++ E VP R + K + QG P K+
Sbjct: 98 NGSKFDGKVIRVDYAESRKREIDEKVGRSVPTAASRESKKQKEEERGQGL---PPKLIVR 154
Query: 222 NLGWGLTS-QGLRDAFQGQPGLLSAKVIFE---RYTGRSRGFGFVTFETAEDLQSALDAM 277
NL W + + L F+ KV F + G+ GFGF+T ++ + AL +
Sbjct: 155 NLPWSIKEPEDLNVLFRS-----FGKVKFATLPKRNGKLSGFGFITMRGRKNAERALQMI 209
Query: 278 NG 279
NG
Sbjct: 210 NG 211
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 114 RLYVGNLPYSMTS-SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+L V NLP+S+ L +F G V A + + + GFGF+TM + A+ A++
Sbjct: 150 KLIVRNLPWSIKEPEDLNVLFRSFGKVKFATLP--KRNGKLSGFGFITMRGRKNAERALQ 207
Query: 173 LFDGSQIGGRTVKVNF 188
+ +G +I GR + V++
Sbjct: 208 MINGKEIDGRQLAVDW 223
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 20/92 (21%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
A +++ NLP++ T L + F G + A +V D T+R RG GFV ++A
Sbjct: 303 ATTIFIRNLPFTATDQVLYDHFKTHFGPLRYARVVLDYETERPRGTGFVCFWKPDDANTC 362
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGP 202
IR E PRG E AM P
Sbjct: 363 IR-----------------EAPRGAE--AMAP 375
>gi|357480265|ref|XP_003610418.1| RNA-binding protein [Medicago truncatula]
gi|355511473|gb|AES92615.1| RNA-binding protein [Medicago truncatula]
Length = 319
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 96/182 (52%), Gaps = 17/182 (9%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P +++DE L++G+L Y M + L F+ G V S +++ ++ T++S G+GF+ S
Sbjct: 65 PPPSSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFIS 124
Query: 164 VEEAKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYA 220
A+ ++ F+G+ + GG+ ++N+ G +R DSP + I+
Sbjct: 125 RAGAERVLQTFNGTIMPNGGQNFRLNWATFSSGEKRHD-------------DSPDYTIFV 171
Query: 221 GNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L ++ L + F+ + + AKV+ +R TGR++G+GFV F + A+ M G
Sbjct: 172 GDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQG 231
Query: 280 VV 281
V+
Sbjct: 232 VL 233
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L ++ L EVF +V A++V DR T R++G+GFV E A+
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 174 FDGSQIGGRTVKV 186
G R +++
Sbjct: 229 MQGVLCSTRPMRI 241
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 17/167 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +T + L E+F+ GT+ S + D T RS G+ ++ +A+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ I G+ +++ + G R+ MG I+ NL + ++ L D
Sbjct: 73 NFEMIKGQPIRIMWSHRDPGLRRSGMG---------------NIFIKNLENSIDNKALYD 117
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS+KV++ + SRGFGFV FET E Q A++ MNG++
Sbjct: 118 TFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTMNGML 162
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 48/169 (28%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G++ S+++VY+ SRGFGFV + E A++AI
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPK--LQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + R V+ ++P A++ P + + +Q +S H
Sbjct: 159 NGMLLNDRKVRSDYP-----WSLASLCPATLISSCFQVMTESSH---------------- 197
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
S+GFGFV F + E+ A+ MNG +
Sbjct: 198 -----------------------SKGFGFVCFSSPEEATKAVTEMNGRI 223
>gi|320591904|gb|EFX04343.1| nucleolin protein [Grosmannia clavigera kw1407]
Length = 413
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 12/205 (5%)
Query: 81 SQDEPETEQEEEEEEEAV----EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
+++EP +++ ++EE A + EEE + +++ L+VGNL +++ S L + F
Sbjct: 135 TEEEPSKKRKADDEEPAAAKKAKTEEEGETSST-----LFVGNLSWNVDDSVLYDEFKGF 189
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
+ A ++ DR T RSRGFG+V SVE A+ A G + GR +K++F R
Sbjct: 190 DGLTGARVITDRETQRSRGFGYVEFDSVEHAQAAFDKMTGYFLDGRELKIDF-STGRAKS 248
Query: 197 RAAMGPKLQNSYQGFVDSPHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTG 254
A + G V SP ++ GNL + + + F + S ++ + +G
Sbjct: 249 NDANPAASRAKKYGDVTSPESDTLFVGNLSFDADEETVSAFFSEVANVKSLRLPTDMESG 308
Query: 255 RSRGFGFVTFETAEDLQSALDAMNG 279
R +GFG+V+F + ED + A D +NG
Sbjct: 309 RPKGFGYVSFYSLEDSKKAFDTLNG 333
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGNL + +++ F+E V S + D + R +GFG+V+ S+E++K
Sbjct: 266 SPESDTLFVGNLSFDADEETVSAFFSEVANVKSLRLPTDMESGRPKGFGYVSFYSLEDSK 325
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
+A +G GR V++++
Sbjct: 326 KAFDTLNGQSCAGRNVRLDY 345
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 16/174 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V S E+
Sbjct: 43 AHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDG 102
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++A+ + + I G+ ++ + + P L+ + QG ++ NL +
Sbjct: 103 EKALEELNYTVIKGKPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDHAI 147
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
++ L D F +LS KV + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 148 DNKALHDTFAAFGNILSCKVAQDEL-GNSKGYGFVHYETAEAANNAIKHVNGML 200
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 11/166 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL +++ + +L + FA G + S ++ D + + S+G+GFV + E A AI+
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGN-SKGYGFVHYETAEAANNAIKHV 196
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ER + K + F + IY N+ +T + R+
Sbjct: 197 NGMLLNEKKVFVGH-HIPKK-ERMS---KFEEMKANFTN----IYVKNIDLDVTDEDFRE 247
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F+ + SA + + G+SRGFGFV + E A+D +N +
Sbjct: 248 LFEKHGDITSASIARDD-QGKSRGFGFVNYIRHEAAAVAVDHLNDI 292
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 81/224 (36%), Gaps = 68/224 (30%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T E+F + G + SA I D +SRGFGFV E A A+
Sbjct: 231 IYVKNIDLDVTDEDFRELFEKHGDITSASIARDD-QGKSRGFGFVNYIRHEAAAVAVDHL 289
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ + G+ + V E+ + E A + + Q+ YQG +Y NL
Sbjct: 290 NDIEFKGQKLYVGRAQKKHEREEELRKQYEAARL--EKQSKYQGV-----NLYIKNLNDD 342
Query: 227 LTSQGLRDAFQGQPGLLSAKVIF------------------------------------- 249
+ + LRD F + SAKVI
Sbjct: 343 VDDEKLRDMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQN 402
Query: 250 ---------------ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
++ G+S+GFGFV F ++ A+ MN
Sbjct: 403 GEDTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMN 446
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 91/172 (52%), Gaps = 16/172 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D +A LYVG L S+ +SL E+F+ G V+S + D VT +S G+ +V +E+ ++
Sbjct: 47 DTSASLYVGELNPSVNEASLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEK 106
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI + S I GR ++ + + P L+ + +G I+ NL + +
Sbjct: 107 AIDDLNYSLIDGRPCRIMW---------SQRDPSLRRNGEG------NIFIKNLHPAIDN 151
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ L D F +LS KV + G S+ FGFV +ETAE ++A++ +NG++
Sbjct: 152 KALHDTFSAFGKILSCKVATDE-QGNSKCFGFVHYETAEAARAAIENVNGML 202
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ + + +F G + S + D +S+GFGFV S E A +A+
Sbjct: 233 VYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKD-AEGKSKGFGFVNFESHEAAVKAVEEL 291
Query: 175 DGSQIGGRTVKV--------NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ I G+ + V E+ R E A + KL + YQG ++ NL
Sbjct: 292 NDKDINGQNLYVGRAQKKRERIEELKRQYETARL-EKL-SKYQGV-----NLFVKNLDDS 344
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ S L + F+ + SA+V+ + + G+S+GFGFV F + E+ A+ MN
Sbjct: 345 IDSVKLEEEFKPFGTITSARVMVDEH-GKSKGFGFVCFSSPEEATKAITEMN 395
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ L+V NL S+ S L E F GT+ SA ++ D +S+GFGFV S EEA +A
Sbjct: 332 QGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDE-HGKSKGFGFVCFSSPEEATKA 390
Query: 171 I-----RLFDGSQI 179
I R+F G +
Sbjct: 391 ITEMNQRMFHGKPL 404
>gi|425783198|gb|EKV21057.1| Nucleolin protein Nsr1, putative [Penicillium digitatum Pd1]
Length = 467
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 85 PETEQEEEEEEEAV-----EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTV 139
P +++ + +EE A + EE P+ A A L++GNL +++ + F+E G +
Sbjct: 182 PVSKKRKADEEPAATAKKSKTEEVPEGAV----ANLFIGNLSWNVDEEWVQREFSEFGEL 237
Query: 140 ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR-----G 194
+ IV DR T RSRGFG+V S +A +A+ G+ + GRT+ +++ PR G
Sbjct: 238 SGVRIVTDRETGRSRGFGYVEYNSAADAAKAMEAKKGTDLDGRTINLDY-AAPRQANTQG 296
Query: 195 GERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 250
+R+ Q+ + + D SP ++ GNL + T L + F Q +L ++ E
Sbjct: 297 ADRS------QDRARSYGDQTSPESDTLFVGNLPFSATEDALHEVFGAQGSVLGIRLPTE 350
Query: 251 RYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ TGR +GFG+V F + ++ ++A A+NG
Sbjct: 351 QETGRPKGFGYVQFSSIDEAKAAHAALNG 379
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGNLP+S T +L EVF G+V + ++ T R +GFG+V S++EAK
Sbjct: 312 SPESDTLFVGNLPFSATEDALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAK 371
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
A +G ++ GR ++++F PR
Sbjct: 372 AAHAALNGHELEGRAIRLDF-STPR 395
>gi|347964852|ref|XP_309157.5| AGAP000965-PA [Anopheles gambiae str. PEST]
gi|333466508|gb|EAA04954.5| AGAP000965-PA [Anopheles gambiae str. PEST]
Length = 340
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D L V LP +MT + +F+ G V S +++ D+VT +S G+GFV E+A++
Sbjct: 24 DSKTNLIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTGQSLGYGFVNYHRPEDAEK 83
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI F+G ++ +T+KV+F R A G L Y L +T
Sbjct: 84 AINTFNGLRLQNKTIKVSF---ARPSSDAIKGANL--------------YVSGLSKSMTQ 126
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q L + F +++++++ + TG S+G GF+ F+ + + A+ +NG
Sbjct: 127 QDLENLFNAYGQIITSRILCDNITGLSKGVGFIRFDQRSEAERAIQQLNG 176
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 39/208 (18%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ A LYV L SMT L +F G + ++ I+ D +T S+G GF+ EA+ A
Sbjct: 111 KGANLYVSGLSKSMTQQDLENLFNAYGQIITSRILCDNITGLSKGVGFIRFDQRSEAERA 170
Query: 171 IRLFDGSQIGGRT--VKVNFPEVPRGGERAAM---------GPKLQNSYQGFVD------ 213
I+ +G+ G + + V F P A+ P L+ G +
Sbjct: 171 IQQLNGTTPKGASEPITVKFANNPSNNINKAIPPLAAYLTPTPNLRRFPPGPIHPLSGRF 230
Query: 214 SPHKIYAGNL-------------GWGL--------TSQGLRDAFQGQPGLL-SAKVIFER 251
S + G+L GW + T + + G G + S KVI +
Sbjct: 231 SRYSPLTGDLGSSVLSANAINGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIKDL 290
Query: 252 YTGRSRGFGFVTFETAEDLQSALDAMNG 279
T + +GFGFVT ++ A+ ++NG
Sbjct: 291 QTNKCKGFGFVTMTNYDEAVVAVQSLNG 318
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + L ++F G V S +++ D T++ +GFGFVTM + +EA A++
Sbjct: 257 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIKDLQTNKCKGFGFVTMTNYDEAVVAVQSL 316
Query: 175 DGSQIGGRTVKVNF 188
+G +G R ++V+F
Sbjct: 317 NGYTLGNRVLQVSF 330
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
DS + L +T + ++ F + S K+I ++ TG+S G+GFV + ED +
Sbjct: 24 DSKTNLIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTGQSLGYGFVNYHRPEDAEK 83
Query: 273 ALDAMNGV 280
A++ NG+
Sbjct: 84 AINTFNGL 91
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
++A LYVG+L ++T + L E+F G VAS + D VT RS G+ +V +V +A+ A
Sbjct: 8 QSASLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAERA 67
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + I GR ++ + + P ++ S QG I+ NL + ++
Sbjct: 68 LDTLNYTLIKGRPCRIMW---------SHRDPSIRKSGQG------NIFIKNLDKSIDNK 112
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L D F +LS KV+ + G S+G+GFV +ET+E SA+ +NG
Sbjct: 113 ALYDTFSAFGNILSCKVVTDG-KGNSKGYGFVHYETSEAADSAIAKVNG 160
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 73/170 (42%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ NL + T L F GTV SA ++ D D R F FV E A A
Sbjct: 191 IYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKD-PRDIGRQFAFVNFEDHEAAHRATEEL 249
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLGWGLTSQ 230
+G ++G + V V + ER + KL+ YQG +Y NL + +
Sbjct: 250 NGRKLGDKEVYVG--RAQKKSERESFLRKLREERAQKYQGI-----NLYIKNLDDTVNDE 302
Query: 231 GLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F P G +++ + G SRGFGFV + ED A+ MNG
Sbjct: 303 ELHKLFSALPFGQITSCKVMSDDKGNSRGFGFVCYTNPEDASKAVSEMNG 352
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 20/180 (11%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
+P + S + +++ NL S+ + +L + F+ G + S ++V D + S+G+GFV
Sbjct: 89 DPSIRKSGQG-NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVTDGKGN-SKGYGFVHYE 146
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK---IY 219
+ E A AI +G + G+ V V G A + S P K IY
Sbjct: 147 TSEAADSAIAKVNGKMLNGKIVYV--------GRFIARKERTPGS------DPEKFTNIY 192
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NLG T + L+ F G G + + V+ + R F FV FE E A + +NG
Sbjct: 193 IKNLGEAYTEEDLKRDF-GAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEELNG 251
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA--GTVASAEIVY 146
Q++ E E + + E + A + LY+ NL ++ L ++F+ G + S +++
Sbjct: 265 QKKSERESFLRKLREER-AQKYQGINLYIKNLDDTVNDEELHKLFSALPFGQITSCKVMS 323
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
D + SRGFGFV + E+A +A+ +G + + + V E
Sbjct: 324 DDKGN-SRGFGFVCYTNPEDASKAVSEMNGKMVANKPIYVALAE 366
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 17/167 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +T + L E+F+ GT+ S + D T RS G+ ++ +A+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ I G+ +++ + G R+ MG I+ NL + ++ L D
Sbjct: 73 NFEMIKGQPIRIMWSHRDPGLRRSGMG---------------NIFIKNLENSIDNKALYD 117
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS+KV++ + SRGFGFV FET E Q A++ MNG++
Sbjct: 118 TFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTMNGML 162
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G++ S+++VY+ SRGFGFV + E A++AI
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R A +G + GF + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFK-SRQKREAELGARAL----GFTN----IYVKNLRVDMDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F Q G + + G+SRGFGF+ FE E+ Q A+D MNG
Sbjct: 210 LF-SQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNG 253
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 24/178 (13%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL M L ++F++ G S +++ D +SRGFGF+ EEA++A+
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVDHM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERA-----------AMGPKLQNSYQGFVDSPHKIYAGNL 223
+G ++ G+ + V R +RA M + QN YQG +Y NL
Sbjct: 252 NGKEVSGQLLYVG-----RAQKRAERQNELKRRFEQMKQERQNRYQGV-----NLYVKNL 301
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ L++ F + SAKV+ E + S+GFGFV F + E+ A+ MNG +
Sbjct: 302 DDSINDDRLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q E + E + E +++E + + + LYV NL S+ L EVF+ G +
Sbjct: 266 AQKRAERQNELKRRFEQMKQERQNRY----QGVNLYVKNLDDSINDDRLKEVFSTYGVIT 321
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
SA+++ + + S+GFGFV S EEA +A+ +G +G + + V + R ER A+
Sbjct: 322 SAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ--RKEERKAI 377
Query: 201 GPKLQNSYQ 209
L N Y+
Sbjct: 378 ---LTNQYR 383
>gi|406917506|gb|EKD56278.1| RNA-binding protein [uncultured bacterium]
Length = 89
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 57/88 (64%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E +LYVGNLPYS TS SL E+FA +G V A ++ D+ + RS+GFGFVTM A++
Sbjct: 2 EEKNKLYVGNLPYSATSDSLKELFAGSGEVVDAVVISDKFSGRSKGFGFVTMKDDAAAEK 61
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGER 197
AI+ DG ++ GR +KVN R R
Sbjct: 62 AIKDTDGKEVDGRNIKVNIARPMRENNR 89
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + TS L++ F G ++ A VI ++++GRS+GFGFVT + + A+
Sbjct: 5 NKLYVGNLPYSATSDSLKELFAGSGEVVDAVVISDKFSGRSKGFGFVTMKDDAAAEKAIK 64
Query: 276 AMNG 279
+G
Sbjct: 65 DTDG 68
>gi|115453831|ref|NP_001050516.1| Os03g0569900 [Oryza sativa Japonica Group]
gi|113548987|dbj|BAF12430.1| Os03g0569900, partial [Oryza sativa Japonica Group]
Length = 446
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
DE L++G+L + M + L F++AG + SA+I+ ++ T + G+GF+ GS A++
Sbjct: 108 DEVRTLWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQ 167
Query: 170 AIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G + G + K+N+ G +R G S + I+ G+L +
Sbjct: 168 VLQGYNGQMMPNGNQVFKLNWATSGAGEKRGDDG------------SDYTIFVGDLASDV 215
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
T L+D F+ + AKV+F+R TGRS+G+GFV F ++ A+ MNG
Sbjct: 216 TDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNG 268
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L + F A +V A++V+DR T RS+G+GFV G ++E A+
Sbjct: 206 IFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTE 265
Query: 174 FDGSQIGGRTVKVNFPEVPR--GGERAAMGPKLQNSYQGFVDS-PHK--IYAGNLGWGLT 228
+G R +++ + GG++ QN+ DS P+ ++ G L +T
Sbjct: 266 MNGQYCSSRPMRIGPASNKKNIGGQQQPSA-TYQNTQGTDSDSDPNNTTVFVGGLDPSVT 324
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L+ AF L+ K+ + GFV + + A+ +NG
Sbjct: 325 DEVLKQAFSPYGELVYVKIPVGKRC------GFVQYSNRASAEEAIRMLNG 369
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L S+T L + F+ G E+VY ++ R GFV + A+EAIR+
Sbjct: 314 VFVGGLDPSVTDEVLKQAFSPYG-----ELVYVKIPVGKR-CGFVQYSNRASAEEAIRML 367
Query: 175 DGSQIGGRTVKVNFPEVP 192
+GSQ+GG+++++++ P
Sbjct: 368 NGSQLGGQSIRLSWGRSP 385
>gi|323448546|gb|EGB04443.1| hypothetical protein AURANDRAFT_32583 [Aureococcus anophagefferens]
Length = 240
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 33/198 (16%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R++VGNL + + L + F + GTV A ++ +R RS+G G V S +EA AI
Sbjct: 24 ARRVFVGNLSWQTSWQDLKDHFRQCGTVVHASVMEER-PGRSKGCGIVEFESADEAALAI 82
Query: 172 RLFDGSQIGGRTVKVN--------FPEVPRGGERAAM-GPKL------------------ 204
++ GR V+V P GG+R A+ P
Sbjct: 83 ETLHDVELDGRPVQVREDREDRDLAPAKAPGGKRPAVQAPAWGEPRGGGGGGEIEVGRRQ 142
Query: 205 ----QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFG 260
Q++ + ++Y GNL WG + Q L+D F+ ++ AKV+ ER GRS+G+G
Sbjct: 143 RKAAQDADGDVIRVARRVYVGNLAWGTSWQDLKDHFRQCGSVVHAKVMEER-PGRSKGWG 201
Query: 261 FVTFETAEDLQSALDAMN 278
V FE E+ +A++ +N
Sbjct: 202 IVEFEAPEEAVAAIEQLN 219
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNL + + L + F + G+V A+++ +R RS+G+G V + EEA AI
Sbjct: 157 ARRVYVGNLAWGTSWQDLKDHFRQCGSVVHAKVMEER-PGRSKGWGIVEFEAPEEAVAAI 215
Query: 172 RLFDGSQIGGRTVKVN 187
+ S + GR ++V
Sbjct: 216 EQLNDSDLDGRPIQVR 231
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
+++ GNL W + Q L+D F+ Q G + + E GRS+G G V FE+A++ A++
Sbjct: 26 RVFVGNLSWQTSWQDLKDHFR-QCGTVVHASVMEERPGRSKGCGIVEFESADEAALAIET 84
Query: 277 MNGV 280
++ V
Sbjct: 85 LHDV 88
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 15/170 (8%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG+L + L E+F G VAS + D VT RS G+ +V +A+ A+
Sbjct: 12 SASLYVGDLLPEVNEGLLYEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQAADAERAL 71
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I G+ ++ + + R+ +G I+ NL G+ ++
Sbjct: 72 DSMNFTDIKGKPCRIMWSQRDPSVRRSGVG---------------NIFVKNLHEGIDNKQ 116
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV+ +R TG S+G+G+V +ET E SA+D ++G++
Sbjct: 117 LYDTFSLFGNILSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKLDGML 166
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 75 FQVTEDSQD--------EPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTS 126
++VTED + + + E + E + E E+ + A + LYV NL ++T
Sbjct: 306 YKVTEDGDEVEKALFVGRAQKKSERQAELRSKYEAEKMERIAKFQGVNLYVKNLDDAVTD 365
Query: 127 SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
L + F GT+ SA+I+ D T+ SRGFGFV + E+A A+ G + G+ + V
Sbjct: 366 DMLRDEFGGMGTITSAKIMRDAKTNNSRGFGFVCFSTPEDATRAVNEMSGKIVAGKPIYV 425
Query: 187 NFPE 190
+ +
Sbjct: 426 SLAQ 429
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
+ +P V S ++V NL + + L + F+ G + S ++V DR T S+G+G+V
Sbjct: 90 QRDPSVRRSG-VGNIFVKNLHEGIDNKQLYDTFSLFGNILSCKVVCDRETGLSKGYGYVH 148
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKV 186
+ E A AI DG I G+ V+V
Sbjct: 149 YETNEAAASAIDKLDGMLIDGKEVQV 174
>gi|303275187|ref|XP_003056892.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461244|gb|EEH58537.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 302
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 17/171 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
++ A +YVGNL + T L EVF +AG V + + DRV++ +G+GFV + E+A
Sbjct: 5 NQDATIYVGNLDLACTEEILWEVFVQAGPVVNVYVPKDRVSNAHQGYGFVEFANEEDADY 64
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI++ + ++ G+ V+VN +A+ K D ++ GNL L
Sbjct: 65 AIKVLNMIKLHGKPVRVN---------KASQDKKSN-------DVGANLFVGNLDSELDE 108
Query: 230 QGLRDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L D F +++ K++ + +G SRGFGFV++++ E +A++AMNG
Sbjct: 109 KLLYDTFSAFGVVITTPKIMRDPDSGNSRGFGFVSYDSFEAADAAIEAMNG 159
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASA-EIVYDRVTDRSRGFGFVTMGSVEE 166
++D A L+VGNL + L + F+ G V + +I+ D + SRGFGFV+ S E
Sbjct: 90 SNDVGANLFVGNLDSELDEKLLYDTFSAFGVVITTPKIMRDPDSGNSRGFGFVSYDSFEA 149
Query: 167 AKEAIRLFDGSQIGGRTVKVNF 188
A AI +G + R + V F
Sbjct: 150 ADAAIEAMNGQFLCNRPISVTF 171
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 16/174 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A+ +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V S +
Sbjct: 51 ANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDG 110
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ A+ + + I G+ ++ + + P L+ + QG ++ NL +
Sbjct: 111 ERALEELNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIKNLDGAI 155
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
++ L D F +LS KV + + G S+G+GFV +ETAE SA+ ++NG++
Sbjct: 156 DNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETAEAANSAIKSVNGML 208
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 146 VFIKNLDGAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETAEAANSAIKSV 204
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ + K + F + IY N+ T R
Sbjct: 205 NGMLLNEKKVFVGH-HIPKKDRMS----KFEEMKANFTN----IYVKNIDPEATDDEFRA 255
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + ++ G+SRGFGFV + ED A++ +N
Sbjct: 256 LFEKYGDITSASLAHDQ-EGKSRGFGFVNYIRHEDANKAVEELN 298
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ T +F + G + SA + +D+ +SRGFGFV E+A +A+
Sbjct: 239 IYVKNIDPEATDDEFRALFEKYGDITSASLAHDQ-EGKSRGFGFVNYIRHEDANKAVEEL 297
Query: 175 DGSQIGGRTVKVNFPEVPRGGER------AAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+ S G+ + V + E A + YQG +Y NL +
Sbjct: 298 NNSDFKGQALYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGV-----NLYVKNLADEID 352
Query: 229 SQGLRDAFQGQPGLLSAKVI 248
LR F+ + SAKV+
Sbjct: 353 DDELRKIFEPYGAITSAKVM 372
>gi|238007140|gb|ACR34605.1| unknown [Zea mays]
gi|413926095|gb|AFW66027.1| hypothetical protein ZEAMMB73_185087 [Zea mays]
Length = 366
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 18/194 (9%)
Query: 85 PETEQEEEE--EEEAVEEEEEP--KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
PE Q E +EE EEE P +V + +++VG + + T S ++ F + G +
Sbjct: 5 PEDNQHELNGYDEEVDEEEGHPGRRVGRDGGSGKIFVGGVAWETTEESFSKHFEKYGAIT 64
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
+ I+ D+ T RGFGFVT + L D I GRTV+V VPR
Sbjct: 65 DSVIMKDKHTKMPRGFGFVTFSDPSVIDKV--LEDDHVIDGRTVEVKRT-VPREEMITKD 121
Query: 201 GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFG 260
GPK + KI+ G L LT L+D F ++ +++ + TGRSRGFG
Sbjct: 122 GPKTR-----------KIFIGGLPPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFG 170
Query: 261 FVTFETAEDLQSAL 274
F+TFE+ + ++ +
Sbjct: 171 FITFESEDSVERVI 184
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++++G LP S+T L + F+ G V +I+ D T RSRGFGF+T S + + I
Sbjct: 127 KIFIGGLPPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISE 186
Query: 174 FDGSQIGGRTVKVNFPEVPRGG 195
+GG+ V++ E + G
Sbjct: 187 GRMRDLGGKQVEIKKAEPKKHG 208
>gi|395546429|ref|XP_003775090.1| PREDICTED: uncharacterized protein LOC100934042 [Sarcophilus
harrisii]
Length = 819
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 17/172 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+SD L + LP SMT L +FA G + S ++V DRVT +S G+GF+ +A
Sbjct: 498 SSDSKTNLIINYLPQSMTEEELRSLFARVGKIQSCKLVRDRVTGQSLGYGFIDYVHPRDA 557
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ A+ L +G Q +T+KV++ R A +Y L +
Sbjct: 558 ERAVCLLNGLQCPPKTIKVSYARPNSSSIRDA-----------------NLYINGLPKNM 600
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
T + L F +++++++ ++ +G SRG GF+ F + + A+ A+NG
Sbjct: 601 TQKELEHLFSPYGHIITSRILTDKASGTSRGVGFIRFNMKSEAEEAIKALNG 652
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 44/211 (20%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+ LP +MT L +F+ G + ++ I+ D+ + SRG GF+ EA+EAI+
Sbjct: 589 ANLYINGLPKNMTQKELEHLFSPYGHIITSRILTDKASGTSRGVGFIRFNMKSEAEEAIK 648
Query: 173 LFDGSQIGG--RTVKVNF--------PEVPRGG-ERAAMGP-KLQNSYQGFVDSPHKIYA 220
+G + G + V F P+ P ++ GP Q G ++P A
Sbjct: 649 ALNGQKPCGILEPLVVRFAHNQTQVTPQNPLCQLPHSSHGPLPPQPRRSGLNNTPIPTRA 708
Query: 221 GNLGWGLTSQGLRD----AFQGQP----------------------------GLLSAKVI 248
T++ RD F GQ + + K+I
Sbjct: 709 AQNLTPSTTENTRDLVGVTFPGQTVTGWCIFIYNLAPDSDENILWQLFGPFGAVSNVKII 768
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ T + + FGFVT + + A+ ++NG
Sbjct: 769 RDFNTNKCKRFGFVTMTSYNEAALAIASLNG 799
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + L ++F G V++ +I+ D T++ + FGFVTM S EA AI
Sbjct: 738 IFIYNLAPDSDENILWQLFGPFGAVSNVKIIRDFNTNKCKRFGFVTMTSYNEAALAIASL 797
Query: 175 DGSQIGGRTVKVNF 188
+G +GGR ++V+F
Sbjct: 798 NGYCLGGRVLQVSF 811
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
DS + L +T + LR F + S K++ +R TG+S G+GF+ + D +
Sbjct: 500 DSKTNLIINYLPQSMTEEELRSLFARVGKIQSCKLVRDRVTGQSLGYGFIDYVHPRDAER 559
Query: 273 ALDAMNGV 280
A+ +NG+
Sbjct: 560 AVCLLNGL 567
>gi|320580860|gb|EFW95082.1| poly(A+) RNA-binding protein, putative [Ogataea parapolymorpha
DL-1]
Length = 405
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 12/169 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNLPY T L ++F E G V A++V R RSRG G V + + +EAI F
Sbjct: 71 IFVGNLPYHTTWYDLKDLFREVGEVVRADVVTSR--GRSRGMGTVEFANKDLVQEAISKF 128
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN----SYQGFVDSPHKIYAGNLGWGLTSQ 230
D + GR + V P E + +N S +G+ +++ GNL + + Q
Sbjct: 129 DRTMYEGREIFVREDLPPPEKENTGREERRRNAPPPSTEGY-----EVFIGNLPFSVRWQ 183
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L+D F+ ++ A V E + GRS+GFG V FE +ED A+ NG
Sbjct: 184 DLKDLFKSCGPIIRADVR-EDHRGRSKGFGTVIFENSEDADRAIADFNG 231
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 10/191 (5%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
E+E EE S E +++GNLP+S+ L ++F G + A++ D
Sbjct: 148 EKENTGREERRRNAPPPSTEGYEVFIGNLPFSVRWQDLKDLFKSCGPIIRADVREDH-RG 206
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV----NFPEVPRGGERAAMGPKLQNS 207
RS+GFG V + E+A AI F+G + GR ++V F + P+ G + +
Sbjct: 207 RSKGFGTVIFENSEDADRAIADFNGYDMDGRRIEVRLGKQFNKEPQ-GPTESRNSEFVAG 265
Query: 208 YQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267
G + I+A NL W + L D F + A++ F+ R G V F
Sbjct: 266 VVGQGEPNDTIFADNLPWETSETDLFDLFGSIASVKRAELQFDDLN-RPAGTAVVQF--- 321
Query: 268 EDLQSALDAMN 278
++L A+ A+N
Sbjct: 322 QELDGAIAAVN 332
>gi|406873754|gb|EKD23843.1| hypothetical protein ACD_81C00167G0002 [uncultured bacterium]
Length = 111
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 56/74 (75%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVG LPYS T +L ++F++AGTV SA I+ D++T RS+GFGFV M S +EA++AI +
Sbjct: 4 KLYVGGLPYSTTQDALNDLFSQAGTVESAMIIIDKMTGRSKGFGFVEMASDDEAEKAIDM 63
Query: 174 FDGSQIGGRTVKVN 187
F+G GR++ VN
Sbjct: 64 FNGKDFEGRSLTVN 77
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
K+Y G L + T L D F + SA +I ++ TGRS+GFGFV + ++ + A+D
Sbjct: 3 KKLYVGGLPYSTTQDALNDLFSQAGTVESAMIIIDKMTGRSKGFGFVEMASDDEAEKAID 62
Query: 276 AMNG 279
NG
Sbjct: 63 MFNG 66
>gi|403215569|emb|CCK70068.1| hypothetical protein KNAG_0D03220 [Kazachstania naganishii CBS
8797]
Length = 399
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
K + + E A L+VG L +S+ L FA G V SA ++ +R TDRSRG+G+V +
Sbjct: 141 KKSKTQEPATLFVGRLSWSVDDEWLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDFEDI 200
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVDSPHK----IY 219
A++A++ G +I GR + V+ P GG K F D P + ++
Sbjct: 201 SYAEKALKEMQGKEIDGRPINVDMSTSKPAGGASNDRAKK-------FGDVPSEPSDTLF 253
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL + L + F ++S ++ T + +GFG+V + ED + ALDA+ G
Sbjct: 254 LGNLSFDADRDNLYEIFGKFGEIISVRIPTHPETEQPKGFGYVQYTNTEDAKKALDALQG 313
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL + +L E+F + G + S I T++ +GFG+V + E+AK+A+
Sbjct: 252 LFLGNLSFDADRDNLYEIFGKFGEIISVRIPTHPETEQPKGFGYVQYTNTEDAKKALDAL 311
Query: 175 DGSQIGGRTVKVNFPEVPR 193
G I R V+++F PR
Sbjct: 312 QGESINDRPVRLDF-STPR 329
>gi|222837999|gb|EEE76364.1| predicted protein [Populus trichocarpa]
Length = 121
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 75/132 (56%), Gaps = 15/132 (11%)
Query: 133 FAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192
F+E G V SA+++ +R T RS+GFGFV MGS EA+ AI+ G GGR + VN
Sbjct: 1 FSEFGAVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQGLHGQNRGGRDLVVN----- 55
Query: 193 RGGERAAMGPK--LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 250
E M P+ L+ G +K+Y GNL +G+ L AF + SA+V+ E
Sbjct: 56 ---EARPMEPRAPLEEFLMG-----NKLYVGNLPYGVRDNDLEQAFSQFGAVTSARVMME 107
Query: 251 RYTGRSRGFGFV 262
R TGRS+GFGFV
Sbjct: 108 RDTGRSKGFGFV 119
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+LYVGNLPY + + L + F++ G V SA ++ +R T RS+GFGFV M
Sbjct: 74 KLYVGNLPYGVRDNDLEQAFSQFGAVTSARVMMERDTGRSKGFGFVEM 121
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282
SAKV+ ER TGRS+GFGFV + + Q+A+ ++G R
Sbjct: 9 SAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQGLHGQNR 47
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T S L ++F + G V S + D T RS G+G+V + ++A A+ +
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + R +++ + + P ++ S QG I+ NL + + L D
Sbjct: 96 NFTPLNNRPIRIMY---------SHRDPSIRKSGQG------NIFIKNLDKAIDHKALHD 140
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+S+G+GFV F+T E Q A++ +NG++
Sbjct: 141 TFSSFGNILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKLNGML 186
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
+P + S + +++ NL ++ +L + F+ G + S ++ D + +S+G+GFV
Sbjct: 111 HRDPSIRKSGQG-NIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDG-SGQSKGYGFVQ 168
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYA 220
+ E A++AI +G + + V V R ER + G + + + ++
Sbjct: 169 FDTEEAAQKAIEKLNGMLLNDKQVYVG--PFLRKQERESTGDRAKF---------NNVFV 217
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL T L+ F G+ G +++ V+ G+S+ FGFV FE+ +D A++A+NG
Sbjct: 218 KNLSESTTDDELKKTF-GEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNG 275
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 7/168 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S T L + F E GT+ SA ++ D +S+ FGFV S ++A A+
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDG-DGKSKCFGFVNFESTDDAARAVEAL 273
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQG 231
+G +I + V + + ER + K + S + D +Y NL + +
Sbjct: 274 NGKKIDDKEWYVG--KAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEK 331
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++ F + S KV+ + G SRG GFV F T E+ AL MNG
Sbjct: 332 LKELFSSYGTITSCKVMRDP-NGVSRGSGFVAFSTPEEASRALLEMNG 378
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASD-EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
++ E E E ++ E+ K AA + A LYV NL S+ L E+F+ GT+ S +++
Sbjct: 290 KKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMR 349
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
D SRG GFV + EEA A+ +G + + + V
Sbjct: 350 D-PNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTL 390
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 16/174 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + +
Sbjct: 49 AQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 108
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ A+ + + I GR ++ + + P L+ + QG ++ NL +
Sbjct: 109 ERALEDLNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAI 153
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
++ L D F +LS KV + + G S+G+GFV +ETAE Q+A+ +NG++
Sbjct: 154 DNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAAQNAIKHVNGML 206
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A+ AI+
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAAQNAIKHV 202
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + +Y N+ T + R+
Sbjct: 203 NGMLLNDKKVFV--------GHHIAKKDR-QSKFEEMKANFTNVYVKNIDQDTTDEEFRE 253
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + +G+SRGFGFV F + E +A+D +N
Sbjct: 254 LFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAVDNLN 297
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 82/222 (36%), Gaps = 63/222 (28%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI--- 171
+YV N+ T E+F + G + SA + D + +SRGFGFV S E A A+
Sbjct: 237 VYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAVDNL 296
Query: 172 --RLFDGSQI-GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+ F ++ GR K + E + A + + YQG +Y NL +
Sbjct: 297 NEKDFKSQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGV-----NLYIKNLSDDID 351
Query: 229 SQGLRDAFQGQPGLLSAKVIFE-------------------------------------- 250
+ LRD F G + SAKV+ +
Sbjct: 352 DEKLRDLFSGYGTITSAKVMRDNLAAESSSDSEKEAKSEGKENEPPEESKDEAAEKAETK 411
Query: 251 --------------RYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ G+S+GFGFV F + ++ A+ MN
Sbjct: 412 DTKEAKTESKKADKKLLGKSKGFGFVCFSSPDEASKAVTEMN 453
>gi|255939157|ref|XP_002560348.1| Pc15g01230 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584970|emb|CAP83009.1| Pc15g01230 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 507
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 106/201 (52%), Gaps = 17/201 (8%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
+++ +EE A ++ + + A +A L++GNL +++ L F+E G ++ IV D
Sbjct: 227 KRKADEEPAAAAKKSKTEDAPEGASANLFIGNLSWNVDEEWLQREFSEFGELSGVRIVTD 286
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF-------PEVPRGGERAAM 200
R + RSRGFG+V S +A +A+ G+ + GRT+ +++ P+ R +RA
Sbjct: 287 RESGRSRGFGYVEYTSAADAAKAMEAKKGTDLDGRTINLDYAAPRQANPQQDRTQDRA-- 344
Query: 201 GPKLQNSYQGFVDSPHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRG 258
SY G SP ++ GNL + T L + F +L ++ E+ TGR +G
Sbjct: 345 -----RSY-GDQTSPESDTLFVGNLPFSATEDALHEVFGAHGSVLGIRLPTEQETGRPKG 398
Query: 259 FGFVTFETAEDLQSALDAMNG 279
FG+V F + ++ ++A A+NG
Sbjct: 399 FGYVQFSSIDEAKAAHGALNG 419
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGNLP+S T +L EVF G+V + ++ T R +GFG+V S++EAK
Sbjct: 352 SPESDTLFVGNLPFSATEDALHEVFGAHGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAK 411
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
A +G ++ GR V+++F PR
Sbjct: 412 AAHGALNGHELEGRAVRLDF-STPR 435
>gi|413921822|gb|AFW61754.1| hypothetical protein ZEAMMB73_478558 [Zea mays]
Length = 131
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V A++VYDR T RSRGFGFV+M S EE +AI
Sbjct: 46 AFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAI 105
Query: 172 RLFDGSQIGGRTVKVN 187
DG ++ GR ++VN
Sbjct: 106 SALDGQELDGRPLRVN 121
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 9/119 (7%)
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYA 220
M +VEEA +AI +F I GR + VN R R G +++ + F + + Y
Sbjct: 1 MSTVEEADKAIEMFSRYDISGRLLNVN-----RASSR---GTRMERPQRQFAPA-FRAYV 51
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL W + L F ++ AKV+++R TGRSRGFGFV+ + E+L A+ A++G
Sbjct: 52 GNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDG 110
>gi|226506980|ref|NP_001152183.1| LOC100285821 [Zea mays]
gi|195653617|gb|ACG46276.1| RNA-binding post-transcriptional regulator csx1 [Zea mays]
Length = 415
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y + L FA G V S +I+ ++VT G+GF+ S E A++
Sbjct: 12 EEVRTLWIGDLQYWTDENYLYSCFAHTGEVQSVKIIRNKVTSLPEGYGFIEFVSHEAAEK 71
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ G T ++N+ G R G S H I+ G+L +
Sbjct: 72 ILQTYNGTQMPGTEHTFRLNWASFSSGERRPDPG------------SDHSIFVGDLAPDV 119
Query: 228 TSQGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F+ + AKV+ + TGRS+G+GFV F + A+ MNGV
Sbjct: 120 TDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGV 173
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 21/182 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D T RS+G+GFV E A+
Sbjct: 110 IFVGDLAPDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTE 169
Query: 174 FDGSQIGGRTVKVN--FPEVPRGGE------------RAAMGPKLQNSYQGFVDSPHKIY 219
+G R ++++ P+ G + A P+LQ + I+
Sbjct: 170 MNGVYCSTRPMRISAAIPKKSTGSQLQYSAAKAVYPATAYAMPQLQAVLPDSDPTNTTIF 229
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL + LR L+ K+ +G GFV + + + A+ ++G
Sbjct: 230 IGNLDPNVIEDELRQICVQFGELIYVKIPV------GKGCGFVQYASRASAEEAVQRLHG 283
Query: 280 VV 281
+
Sbjct: 284 TM 285
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 16/174 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+S +A LYVG L ++T + + E+F G VAS + D VT RS G+ +V + +
Sbjct: 40 SSAPSASLYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTADG 99
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ A+ + S I GR ++ + + P L+ + QG I+ NL +
Sbjct: 100 ERALEQLNYSLIKGRPCRIMW---------SQRDPALRKTGQG------NIFIKNLDEQI 144
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
++ L D F +LS KV + GRS+G+GFV +ETAE ++A+ A+NG++
Sbjct: 145 DNKALHDTFVAFGNVLSCKVATDE-QGRSKGYGFVHYETAEAAETAIKAVNGML 197
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + + +L + F G V S ++ D RS+G+GFV + E A+ AI+
Sbjct: 135 IFIKNLDEQIDNKALHDTFVAFGNVLSCKVATDE-QGRSKGYGFVHYETAEAAETAIKAV 193
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V P +PR ER + KL F + +Y NL +T + +
Sbjct: 194 NGMLLNDKKVYVG-PHIPRK-ERQS---KLDEMKAQFTN----LYIKNLDTEVTQEEFEE 244
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F + SA V + GRS+GFGFV +E+ E+ Q+A+D ++
Sbjct: 245 LFNRYGSVTSAIVQVDD-EGRSKGFGFVNYESHEEAQAAVDNLH 287
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL +T E+F G+V SA + D RS+GFGFV S EEA+ A+
Sbjct: 228 LYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDD-EGRSKGFGFVNYESHEEAQAAVDNL 286
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ + G+ + V E+ R E+A M KL + YQG +Y NL
Sbjct: 287 HDTDLKGKKLYVTRAQKKAEREEELRRSYEQAKME-KL-SKYQGV-----NLYVKNLEDD 339
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ LR F+ + S KV+ + G S+GFGFV F + ++ A+ MN
Sbjct: 340 VDDDKLRAEFEPFGTITSCKVMSDE-KGSSKGFGFVCFSSPDEATKAIAEMN 390
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKVA--ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE E+ K+ + + LYV NL + L F GT+ S +++
Sbjct: 302 QKKAEREEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVM 361
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
D S+GFGFV S +EA +AI + IG + + V+
Sbjct: 362 SDE-KGSSKGFGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSL 403
>gi|238005936|gb|ACR34003.1| unknown [Zea mays]
gi|414865083|tpg|DAA43640.1| TPA: RNA-binding post-transcriptional regulator csx1 [Zea mays]
Length = 415
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y + L FA G V S +I+ ++VT G+GF+ S E A++
Sbjct: 12 EEVRTLWIGDLQYWTDENYLYSCFAHTGEVQSVKIIRNKVTSLPEGYGFIEFVSHEAAEK 71
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ G T ++N+ G R G S H I+ G+L +
Sbjct: 72 ILQTYNGTQMPGTEHTFRLNWASFSSGERRPDPG------------SDHSIFVGDLAPDV 119
Query: 228 TSQGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F+ + AKV+ + TGRS+G+GFV F + A+ MNGV
Sbjct: 120 TDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGV 173
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 21/182 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D T RS+G+GFV E A+
Sbjct: 110 IFVGDLAPDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTE 169
Query: 174 FDGSQIGGRTVKVN--FPEVPRGGE------------RAAMGPKLQNSYQGFVDSPHKIY 219
+G R ++++ P+ G + A P+LQ + I+
Sbjct: 170 MNGVYCSTRPMRISAAIPKKSTGSQLQYSAAKAVYPATAYAMPQLQAVLPDSDPTNTTIF 229
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL + LR L+ K+ +G GFV + + + A+ ++G
Sbjct: 230 IGNLDPNVIEDELRQICVQFGELIYVKIPV------GKGCGFVQYASRASAEEAVQRLHG 283
Query: 280 VV 281
+
Sbjct: 284 TM 285
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V S E+
Sbjct: 42 AHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSED 101
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
++A+ + + I G+ ++ + + P L+ + QG ++ NL
Sbjct: 102 GEKALEELNYTVIKGKPCRIMW---------SQRDPALRKTGQG------NVFIKNLDHA 146
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 147 IDNKALHDTFAAFGNILSCKVAQDEL-GNSKGYGFVHYETAEAANNAIKHVNGML 200
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL +++ + +L + FA G + S ++ D + + S+G+GFV + E A AI+
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGN-SKGYGFVHYETAEAANNAIKHV 196
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ER + K + F + IY N+ ++ + R+
Sbjct: 197 NGMLLNEKKVFVGH-HIPKK-ERMS---KFEEMKANFTN----IYVKNIDLDVSDEEFRE 247
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + G+SRGFGFV + E +A+DA+N
Sbjct: 248 LFEKHGDITSASIARDE-QGKSRGFGFVNYIKHEAASAAVDALN 290
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 81/223 (36%), Gaps = 67/223 (30%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ ++ E+F + G + SA I D +SRGFGFV E A A+
Sbjct: 231 IYVKNIDLDVSDEEFRELFEKHGDITSASIARDE-QGKSRGFGFVNYIKHEAASAAVDAL 289
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ + G+ + V E+ + E A + + Q+ YQG +Y NL
Sbjct: 290 NDTDFRGQKLYVGRAQKKHEREEELRKQYEAARL--EKQSKYQGV-----NLYIKNLNDD 342
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFE------------------------------------ 250
+ + LRD F + SAKV+ +
Sbjct: 343 VDDEKLRDMFTPFGTITSAKVMRDAMPAERSETPGDEKKEEAKEESEKTEESNEGADDKK 402
Query: 251 ---------------RYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ G+S+GFGFV F ++ A+ MN
Sbjct: 403 DENKPGEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMN 445
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L +++ + L E+F G VAS + D VT RS G+ +V + + + A+
Sbjct: 48 SASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 107
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ S I GR ++ + + P L+ + QG I+ NL + ++
Sbjct: 108 EQLNYSLIKGRACRIMW---------SQRDPALRKTGQG------NIFIKNLDEAIDNKA 152
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + GRS+G+GFV +ETAE ++A+ A+NG++
Sbjct: 153 LHDTFAAFGNVLSCKVATDE-QGRSKGYGFVHYETAEAAETAIKAVNGML 201
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G V S ++ D RS+G+GFV + E A+ AI+
Sbjct: 139 IFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDE-QGRSKGYGFVHYETAEAAETAIKAV 197
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + ER + KL F + IY NL ++ +
Sbjct: 198 NGMLLNDKKVYVGHHISKK--ERQS---KLDEIRAQFTN----IYVKNLDPEVSLEEFTQ 248
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ Q G +++ VI G S+GFGFV FE E+ Q+A+D ++
Sbjct: 249 LFE-QFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVDGLH 291
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL ++ ++F + G V SA I D + S+GFGFV EEA+ A+
Sbjct: 232 IYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGN-SKGFGFVNFEFHEEAQNAVDGL 290
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
++ GR + V+ E+ + E A M + + YQG +Y NL
Sbjct: 291 HDTEYNGRKLFVSRAQKKAEREEELRKSYEHAKM--EKMSKYQGV-----NLYIKNLDDE 343
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + LR F+ + SAKV+ + G S+GFGFV F + ++ A+ MN
Sbjct: 344 IDDERLRAEFEPFGTITSAKVMRDE-KGSSKGFGFVCFSSPDEATKAVAEMN 394
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE + E K+ + + LY+ NL + L F GT+ SA+++
Sbjct: 306 QKKAEREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDERLRAEFEPFGTITSAKVM 365
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
D S+GFGFV S +EA +A+ + IG + + V+
Sbjct: 366 RDE-KGSSKGFGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSL 407
>gi|367015628|ref|XP_003682313.1| hypothetical protein TDEL_0F02910 [Torulaspora delbrueckii]
gi|359749975|emb|CCE93102.1| hypothetical protein TDEL_0F02910 [Torulaspora delbrueckii]
Length = 436
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 12/180 (6%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
KV S E A ++VG L +S+ L F G V SA ++Y+R TDRSRG+G+V
Sbjct: 179 KVELSGEPATIFVGRLSWSIDDEWLKNEFDHIGGVVSARVIYERGTDRSRGYGYVDFEDK 238
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVDSPHK----IY 219
A++A++ G +I GR + + P G R K F D P + ++
Sbjct: 239 SYAEKAVKEMHGKEIDGRPINCDLSTSKPAGNPRDDRAKK-------FGDLPSEPSETLF 291
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL + + + F ++S ++ T + +GFG+V + +D + ALDA+ G
Sbjct: 292 LGNLSFNADRDNIYEMFSKFGEIVSVRIPTHPETEQPKGFGYVQYGNVDDAKKALDALQG 351
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S+ + L++GNL ++ ++ E+F++ G + S I T++ +GFG+V G+V++AK
Sbjct: 284 SEPSETLFLGNLSFNADRDNIYEMFSKFGEIVSVRIPTHPETEQPKGFGYVQYGNVDDAK 343
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
+A+ G I R V++++ PR
Sbjct: 344 KALDALQGEYIDNRPVRLDY-STPR 367
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++T S L ++F + G V S + D T RS G+G+V + +A A+ +
Sbjct: 40 LYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAMEML 99
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G++++V + + P L+ S I+ NL + ++ L D
Sbjct: 100 NFTPVNGKSIRVMY---------SHRDPTLRKS------GSANIFIKNLDKSIDNKALHD 144
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS K+ + G+S+G+GFV ++ E Q A+D +NG++
Sbjct: 145 TFSSFGNILSCKIATDS-NGQSKGYGFVQYDNEESAQGAIDKLNGML 190
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A +++ NL S+ + +L + F+ G + S +I D +S+G+GFV + E A+ AI
Sbjct: 125 SANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDS-NGQSKGYGFVQYDNEESAQGAI 183
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + + V V + E K QN +Y NL T
Sbjct: 184 DKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQN-----------VYVKNLSESTTDDE 232
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L+ F G+ G +++ V+ G+S+ FGF+ FETAED A++++NG
Sbjct: 233 LKKVF-GEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNG 279
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL S T L +VF E G + SA ++ D +S+ FGF+ + E+A +A+
Sbjct: 219 VYVKNLSESTTDDELKKVFGEFGNITSAVVMRD-ADGKSKCFGFINFETAEDAAKAVESL 277
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQG 231
+G + + V + + ER + K + + + VD +Y NL + +
Sbjct: 278 NGKKFDDKEWYVG--KAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEK 335
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++ F + S KV+ + +G SRG GFV F T+E+ AL MNG
Sbjct: 336 LKELFSEFGTITSCKVMRDP-SGISRGSGFVAFSTSEEASRALSEMNG 382
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
+ +++ E E+E + E+ A D + LYV NL ++ L E+F+E GT+ S +
Sbjct: 291 KAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCK 350
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
++ D + SRG GFV + EEA A+ +G I + + V + R ER A K
Sbjct: 351 VMRDP-SGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQ--RKEERRA---K 404
Query: 204 LQNSY 208
LQ +
Sbjct: 405 LQAQF 409
>gi|110739563|dbj|BAF01690.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
Length = 84
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 51/76 (67%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVTM V+E EAI
Sbjct: 1 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 60
Query: 175 DGSQIGGRTVKVNFPE 190
DG + GR ++VN E
Sbjct: 61 DGQNLEGRAIRVNGAE 76
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y GNL W + + L F ++ A+V+++R TGRSRGFGFVT ++L A+ A+
Sbjct: 1 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 60
Query: 278 NG 279
+G
Sbjct: 61 DG 62
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 87/182 (47%), Gaps = 24/182 (13%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +Y+ N M L E+F+ G S +++ D + RSRGFGFV G+ EEA++A
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ-----------NSYQGFVDSPHKIY 219
+ +G ++ GR + V R +R +L+ N YQG +Y
Sbjct: 248 VSEMNGKEVNGRMIYVG-----RAQKRIERQSELKRKFEQIKQERINRYQGV-----NLY 297
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL G+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 298 VKNLDDGIDDDRLRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 280 VV 281
+
Sbjct: 356 RI 357
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+G+L +T + L E F+ AG + S + D T RS + ++ +A+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDESIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + + SRG+GFV FET E A+ MNG++
Sbjct: 116 YDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGML 162
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E Y V +Y N G + + LR+
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREL---------EYGAKVMEFTNVYIKNFGEDMDDKRLRE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +GRSRGFGFV + E+ Q A+ MNG
Sbjct: 210 IFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q E + E + + E +++E + + LYV NL + L + F GT+
Sbjct: 266 AQKRIERQSELKRKFEQIKQERINRY----QGVNLYVKNLDDGIDDDRLRKEFLPYGTIT 321
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
SA+++ + S+GFGFV S EEA +A+ +G + + + V + R ER A+
Sbjct: 322 SAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ--RKEERKAI 377
Query: 201 GPKLQNSY 208
L N Y
Sbjct: 378 ---LTNQY 382
>gi|349578366|dbj|GAA23532.1| K7_Nsr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 416
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
++E A ++VG L +S+ L + F G V A ++Y+R TDRSRG+G+V + A+
Sbjct: 166 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAE 225
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLG 224
+AI+ G +I GR + + G + + F D+P + ++ GNL
Sbjct: 226 KAIQEMQGKEIDGRPINCDMSTSKPAGN--------NDRAKKFGDTPSEPSDTLFLGNLS 277
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + + F ++S ++ T + +GFG+V F ED + ALDA+ G
Sbjct: 278 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG 332
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ ++ E+FA+ G V S I T++ +GFG+V ++E+AK+A+
Sbjct: 271 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 330
Query: 175 DGSQIGGRTVKVNF 188
G I R V+++F
Sbjct: 331 QGEYIDNRPVRLDF 344
>gi|6321599|ref|NP_011675.1| Nsr1p [Saccharomyces cerevisiae S288c]
gi|128576|sp|P27476.1|NSR1_YEAST RecName: Full=Nuclear localization sequence-binding protein;
AltName: Full=p67
gi|4058|emb|CAA40472.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae]
gi|1045265|emb|CAA59817.1| NSR1 [Saccharomyces cerevisiae]
gi|1323271|emb|CAA97173.1| NSR1 [Saccharomyces cerevisiae]
gi|285812350|tpg|DAA08250.1| TPA: Nsr1p [Saccharomyces cerevisiae S288c]
gi|392299413|gb|EIW10507.1| Nsr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 414
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
++E A ++VG L +S+ L + F G V A ++Y+R TDRSRG+G+V + A+
Sbjct: 164 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAE 223
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLG 224
+AI+ G +I GR + + G + + F D+P + ++ GNL
Sbjct: 224 KAIQEMQGKEIDGRPINCDMSTSKPAGN--------NDRAKKFGDTPSEPSDTLFLGNLS 275
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + + F ++S ++ T + +GFG+V F ED + ALDA+ G
Sbjct: 276 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG 330
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ ++ E+FA+ G V S I T++ +GFG+V ++E+AK+A+
Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328
Query: 175 DGSQIGGRTVKVNF 188
G I R V+++F
Sbjct: 329 QGEYIDNRPVRLDF 342
>gi|259146662|emb|CAY79919.1| Nsr1p [Saccharomyces cerevisiae EC1118]
Length = 414
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
++E A ++VG L +S+ L + F G V A ++Y+R TDRSRG+G+V + A+
Sbjct: 164 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAE 223
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLG 224
+AI+ G +I GR + + G + + F D+P + ++ GNL
Sbjct: 224 KAIQEMQGKEIDGRPINCDMSTSKPAGN--------NDRAKKFGDTPSEPSDTLFLGNLS 275
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + + F ++S ++ T + +GFG+V F ED + ALDA+ G
Sbjct: 276 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG 330
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ ++ E+FA+ G V S I T++ +GFG+V ++E+AK+A+
Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328
Query: 175 DGSQIGGRTVKVNF 188
G I R V+++F
Sbjct: 329 QGEYIDNRPVRLDF 342
>gi|190406825|gb|EDV10092.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae RM11-1a]
gi|207345058|gb|EDZ72003.1| YGR159Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272028|gb|EEU07041.1| Nsr1p [Saccharomyces cerevisiae JAY291]
gi|323354844|gb|EGA86677.1| Nsr1p [Saccharomyces cerevisiae VL3]
gi|365765431|gb|EHN06939.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 416
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
++E A ++VG L +S+ L + F G V A ++Y+R TDRSRG+G+V + A+
Sbjct: 166 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAE 225
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLG 224
+AI+ G +I GR + + G + + F D+P + ++ GNL
Sbjct: 226 KAIQEMQGKEIDGRPINCDMSTSKPAGN--------NDRAKKFGDTPSEPSDTLFLGNLS 277
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + + F ++S ++ T + +GFG+V F ED + ALDA+ G
Sbjct: 278 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG 332
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ ++ E+FA+ G V S I T++ +GFG+V ++E+AK+A+
Sbjct: 271 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 330
Query: 175 DGSQIGGRTVKVNF 188
G I R V+++F
Sbjct: 331 QGEYIDNRPVRLDF 344
>gi|151943436|gb|EDN61747.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae YJM789]
Length = 418
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
++E A ++VG L +S+ L + F G V A ++Y+R TDRSRG+G+V + A+
Sbjct: 168 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAE 227
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLG 224
+AI+ G +I GR + + G + + F D+P + ++ GNL
Sbjct: 228 KAIQEMQGKEIDGRPINCDMSTSKPAGN--------NDRAKKFGDTPSEPSDTLFLGNLS 279
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + + F ++S ++ T + +GFG+V F ED + ALDA+ G
Sbjct: 280 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG 334
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ ++ E+FA+ G V S I T++ +GFG+V ++E+AK+A+
Sbjct: 273 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 332
Query: 175 DGSQIGGRTVKVNF 188
G I R V+++F
Sbjct: 333 QGEYIDNRPVRLDF 346
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 87/182 (47%), Gaps = 24/182 (13%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +Y+ N M L E+F+ G S +++ D + RSRGFGFV G+ EEA++A
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ-----------NSYQGFVDSPHKIY 219
+ +G ++ GR + V R +R +L+ N YQG +Y
Sbjct: 248 VSEMNGKEVNGRMIYVG-----RAQKRIERQSELKRKFEQIKQERINRYQGV-----NLY 297
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL G+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 298 VKNLDDGIDDDRLRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 280 VV 281
+
Sbjct: 356 RI 357
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+G+L +T + L E F+ AG + S + D T RS + ++ +A+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDESIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + + SRG+GFV FET E A+ MNG++
Sbjct: 116 YDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGML 162
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E Y V +Y N G + + LR+
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREL---------EYGAKVMEFTNVYIKNFGEDMDDKRLRE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +GRSRGFGFV + E+ Q A+ MNG
Sbjct: 210 IFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q E + E + + E +++E + + LYV NL + L + F GT+
Sbjct: 266 AQKRIERQSELKRKFEQIKQERINRY----QGVNLYVKNLDDGIDDDRLRKEFLPYGTIT 321
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
SA+++ + S+GFGFV S EEA +A+ +G + + + V + R ER A+
Sbjct: 322 SAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ--RKEERKAI 377
Query: 201 GPKLQNSY 208
L N Y
Sbjct: 378 ---LTNQY 382
>gi|296805985|ref|XP_002843812.1| nucleic acid-binding protein [Arthroderma otae CBS 113480]
gi|238845114|gb|EEQ34776.1| nucleic acid-binding protein [Arthroderma otae CBS 113480]
Length = 318
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 25/202 (12%)
Query: 92 EEEEEAVEEEEEPKV--------------AASDEAARLYVGNLPYSMTSSSLAEVFAEAG 137
+E +AV EE +P V + + + +YVGN+ + +T++ L E ++ G
Sbjct: 55 DEARDAVSEERKPFVRPISKRSFGLPPTRPSPEPKSTVYVGNILFDITAADLKEYASKYG 114
Query: 138 TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGER 197
V + I+YD SRGFG+V ++EEAK+A+ S+ GR + VN+
Sbjct: 115 KVVGSRIIYDS-RGLSRGFGYVKFENIEEAKKAVNDMHLSEFEGRKLSVNY--------- 164
Query: 198 AAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSR 257
A M K + + Q ++ ++ GN+ +T + L + F P + +V +R TG R
Sbjct: 165 AQMDLK-EETPQRTIEPTRTVFVGNIAHQITDRDLHELFDSIPNVFDVRVAVDRRTGMPR 223
Query: 258 GFGFVTFETAEDLQSALDAMNG 279
GF F E + +A+ G
Sbjct: 224 GFAHAEFTDVESAIAGFEALKG 245
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGN+ + +T L E+F V + DR T RGF VE A
Sbjct: 184 VFVGNIAHQITDRDLHELFDSIPNVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEAL 243
Query: 175 DGSQIGGRTVKVNF 188
G GR +++++
Sbjct: 244 KGKAPYGRPLRLDY 257
>gi|15239958|ref|NP_196239.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|9759319|dbj|BAB09686.1| unnamed protein product [Arabidopsis thaliana]
gi|17065276|gb|AAL32792.1| Unknown protein [Arabidopsis thaliana]
gi|20260002|gb|AAM13348.1| unknown protein [Arabidopsis thaliana]
gi|21593170|gb|AAM65119.1| unknown [Arabidopsis thaliana]
gi|332003601|gb|AED90984.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 146
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 63/96 (65%), Gaps = 5/96 (5%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A++L++G L + T L+E F++ G V A+IV DRV+DRS+GFGFVT S +EA++A+
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Query: 172 RLFDGSQIGGRTVKVNFPEVPR-----GGERAAMGP 202
F+G Q+ GRT+ V++ + + GG A GP
Sbjct: 93 MEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGP 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + T QGL +AF ++ A+++ +R + RS+GFGFVTF +A++ Q AL
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 277 MNG 279
NG
Sbjct: 95 FNG 97
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG+L + L F E G++AS + DRVT S +G+V S ++A AI+
Sbjct: 12 ASIYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNFRSQQDAIRAIK 71
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
L + S + G+ ++V + ++ G ++ NL + + GL
Sbjct: 72 LRNNSYLNGKVIRVMWLHRDPNARKSGRG---------------NVFVKNLAGSIDNAGL 116
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F+ +LS+KV+ G+S+G+GFV FE E +A++ +NG
Sbjct: 117 HDLFKKYGNILSSKVVMSE-DGKSKGYGFVQFEWEESANNAIEKLNG 162
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ ++ L ++F + G + S+++V +S+G+GFV E A AI
Sbjct: 102 VFVKNLAGSIDNAGLHDLFKKYGNILSSKVVMSE-DGKSKGYGFVQFEWEESANNAIEKL 160
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+GS +G + + V + R G+R G + + +Y NL +T L++
Sbjct: 161 NGSTVGNKQIYVG--KFVRKGDRILPGYDAKYT---------NLYIKNLDSDITEALLQE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F ++S I + G S+GF FV +E +D + A++AMNG+
Sbjct: 210 KFSSFGKIISL-AISKDDNGLSKGFAFVNYENPDDAKKAMEAMNGL 254
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 13/172 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL +T + L E F+ G + S I D S+GF FV + ++AK+A+
Sbjct: 193 LYIKNLDSDITEALLQEKFSSFGKIISLAISKDD-NGLSKGFAFVNYENPDDAKKAMEAM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY------QGFVDSPHKIYAGNLGWGLT 228
+G Q G + + V R ++A L + Q +Y N+ +T
Sbjct: 252 NGLQFGSK-----YLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVT 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ LRD F + S KV+ + G S+GFGFV F E+ A+ + NG
Sbjct: 307 DKELRDLFSSCGTITSVKVMRDD-KGISKGFGFVCFSNPEEANKAVMSFNGC 357
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E EQ + E +E+ K AS+ LYV N+ +T L ++F+ GT+
Sbjct: 266 AQKKAEREQILHRQFEEKRKEQILKYQASN----LYVKNIDDDVTDKELRDLFSSCGTIT 321
Query: 141 SAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAIRLFDGS 177
S +++ D D+ S+GFGFV + EEA +A+ F+G
Sbjct: 322 SVKVMRD---DKGISKGFGFVCFSNPEEANKAVMSFNGC 357
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A+
Sbjct: 57 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 116
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 117 EDLNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAIDNKA 161
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + Y G S+G+GFV +ETAE +A+ +NG++
Sbjct: 162 LHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAATNAIKHVNGML 210
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGN-SKGYGFVHYETAEAATNAIKHV 206
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + IY N+ +T + R
Sbjct: 207 NGMLLNEKKVFV--------GHHIAKKDR-QSKFEEMKANFTNIYVKNVEQDVTDEEFRS 257
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + TG+SRGFGFV F E +A++ +N
Sbjct: 258 LFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLN 301
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T +F + G + SA + D T +SRGFGFV E A A+
Sbjct: 241 IYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGL 300
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+ ++ G+ + V R ++ +L+ Y+ ++ K +Y NL +
Sbjct: 301 NEYELKGQKLYVG-----RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 355
Query: 229 SQGLRDAFQGQPGLLSAKVIFE 250
+ LR+ F + SAKV+ E
Sbjct: 356 DEKLRELFSSYGNITSAKVMRE 377
>gi|365758528|gb|EHN00365.1| Hrp1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 539
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 25/179 (13%)
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR 152
E++ A +EE K S E+ ++++G L + T +L E F + GTV +I+ D T R
Sbjct: 142 EQQVAQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGR 201
Query: 153 SRGFGFVTM---GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
SRGFGF++ SV+E + + DG I + +PR +
Sbjct: 202 SRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRA------IPRDEQ------------- 242
Query: 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
D KI+ G +G + + + F ++ A+++ ++ TG+SRGFGFVT+++A+
Sbjct: 243 ---DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 298
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G VAS + D VT RS G+ +V S + ++A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGEKAL 117
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 118 EELNYTIIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDVAIDNKA 162
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ET E Q A+ +NG++
Sbjct: 163 LHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAAQQAIKHVNGML 211
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A++AI+
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAAQQAIKHV 207
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K + F + IY N+ + R+
Sbjct: 208 NGMLLNEKKVYVGH-HIPKKDRQS----KFEEMKANFTN----IYVKNVNPEASDDEFRE 258
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F+ + G +++ + G+SRGFGFV + T E A+D +NG
Sbjct: 259 LFE-RYGEITSSSLARDQDGKSRGFGFVNYTTHESAYKAVDELNG 302
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 49/206 (23%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ + E+F G + S+ + D+ +SRGFGFV + E A +A+
Sbjct: 242 IYVKNVNPEASDDEFRELFERYGEITSSSLARDQ-DGKSRGFGFVNYTTHESAYKAVDEL 300
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+G G+ + V R ++ +L+ SY+ ++ K +Y NL +
Sbjct: 301 NGKDFKGQDLYVG-----RAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVD 355
Query: 229 SQGLRDAFQGQPGLLSAKVIF-------------------------------------ER 251
+ LR F + SAKV+ ++
Sbjct: 356 DEKLRHMFSEFGPITSAKVMRDAPSDGSDEEKEDEQEAEPKKEGNVVEADEEGSEKKGDK 415
Query: 252 YTGRSRGFGFVTFETAEDLQSALDAM 277
G+S+GFGFV F +D A+ M
Sbjct: 416 KFGKSKGFGFVCFSNPDDATKAVAEM 441
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 21/205 (10%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
+TE + ++ E ++++E EE + V+AS LYVG+L S++ + L ++F+
Sbjct: 4 ITEKTAEQLENLSLQDKQEGTNEENQSETVSAS-----LYVGDLDPSVSEAHLYDIFSPI 58
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
G V+S + D +T S G+ +V + AK AI + + I G+ ++ +
Sbjct: 59 GAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMW-------- 110
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
+ P L+ G I+ NL + ++ L D F +LS+KV + TG+S
Sbjct: 111 -SQRDPSLRKKGAG------NIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDE-TGKS 162
Query: 257 RGFGFVTFETAEDLQSALDAMNGVV 281
+GFG+V FE E A+DA+NG++
Sbjct: 163 KGFGYVHFEEDESASEAIDALNGML 187
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 15/171 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVTMGSVEEAKEAIRL 173
+Y+ N+ T E+ A+ G S +V +R + ++GFGFV + E+A + +
Sbjct: 218 VYIKNINTETTDKEFEELVAKFGKTDS--VVLERTPEGENKGFGFVNFVNHEDAVKCVEE 275
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGL 227
+ ++ G+ + VN R ++ +L+ Y+ Y G NL +
Sbjct: 276 LNNTEFKGQPLYVN-----RAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSI 330
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ L + F + SAKV+ G+S+GFGFV F T E+ A+ N
Sbjct: 331 DDKKLEEEFAPYGTITSAKVMTTE-NGKSKGFGFVCFSTPEEATKAITEKN 380
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 25/176 (14%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL + + +L + F+ G + S+++ D T +S+GFG+V E A EAI
Sbjct: 122 AGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDE-TGKSKGFGYVHFEEDESASEAI 180
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ + V P + + ER + K + F + +Y N+ T +
Sbjct: 181 DALNGMLLNGQEIYVG-PHLSK-KERES---KFEEMKANFTN----VYIKNINTETTDKE 231
Query: 232 LRDAFQGQPGLLSAK------VIFERYT-GRSRGFGFVTFETAEDLQSALDAMNGV 280
+ L AK V+ ER G ++GFGFV F ED ++ +N
Sbjct: 232 FEE--------LVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNT 279
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E +QE +++ EA E+ A + L++ NL S+ L E FA GT+
Sbjct: 291 AQKKYERQQELKKQYEATRMEK----MAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTIT 346
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
SA+++ +S+GFGFV + EEA +AI + + G+ + V
Sbjct: 347 SAKVMTTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 391
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G VAS + D VT RS G+ +V S + ++A+
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 114 EELNYTLIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDVAIDNKA 158
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + G S+G+GFV +ET E Q A+ +NG++
Sbjct: 159 LHDTFAAFGNILSCKVAQDE-NGSSKGYGFVHYETDEAAQQAIKHVNGML 207
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A++AI+
Sbjct: 145 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGSSKGYGFVHYETDEAAQQAIKHV 203
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K + F + +Y N+ +T R+
Sbjct: 204 NGMLLNEKKVYVGH-HIPKKDRQS----KFEEMKANFTN----VYVKNISPEVTDDEFRE 254
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S+ + E+ G+SRGFGFV F T E A++ +N
Sbjct: 255 LFERHGDVTSSSIAREQ-DGKSRGFGFVNFTTHEAAAKAVEELN 297
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T E+F G V S+ I ++ +SRGFGFV + E A +A+
Sbjct: 238 VYVKNISPEVTDDEFRELFERHGDVTSSSIAREQ-DGKSRGFGFVNFTTHEAAAKAVEEL 296
Query: 175 DGSQIGGRTVKV 186
+ + G+ + V
Sbjct: 297 NNKDLHGQELYV 308
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 15/187 (8%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
E E E V A D +Y+ N +M L E+FA+ G S +++ D RS+GFGF
Sbjct: 212 ERESELGVKAKD-YTNIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDC-GRSKGFGF 269
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH-- 216
V+ S E+A+ A+ +G Q+ G+ + V R ++ +L+ ++ + H
Sbjct: 270 VSFQSHEDAQAAVDDMNGKQLNGKQIYVG-----RAQKKRERQTELKRHFEQIKQNQHIR 324
Query: 217 ----KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+Y NL + + LR F + SAKV+ E GRS+GFGFV F +++D
Sbjct: 325 YQGVNLYIKNLDDTINDEHLRKEFSPFGTITSAKVMME--NGRSKGFGFVCFSSSKDAAK 382
Query: 273 ALDAMNG 279
A MNG
Sbjct: 383 ASREMNG 389
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L + +T S L E F+ AG + S + D VT S G+ +V A+ +
Sbjct: 45 ASLYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYAYVNFQHRAHAEWVLA 104
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G +++ + + G + +G ++ NL + ++ L
Sbjct: 105 TMNLDVIKGNPIRIMWSQRDPGQRKRGVG---------------NVFVKNLEKSIDNKAL 149
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KVI + S+G+GFV FET E A++ MNG++
Sbjct: 150 YDTFSTFGRILSCKVISDE--NGSKGYGFVHFETQESAGKAIEKMNGML 196
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ + +L + F+ G + S +++ D + S+G+GFV + E A +AI
Sbjct: 135 VFVKNLEKSIDNKALYDTFSTFGRILSCKVISDE--NGSKGYGFVHFETQESAGKAIEKM 192
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + V V + R E + +G K ++ IY N G + Q L +
Sbjct: 193 NGMLLNNLKVFVGRFKSRRERE-SELGVKAKDYTN--------IYIKNFGENMDDQRLTE 243
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + GRS+GFGFV+F++ ED Q+A+D MNG
Sbjct: 244 IFAKYGPTLSVKVMTDD-CGRSKGFGFVSFQSHEDAQAAVDDMNG 287
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E + E + E +++ + + + LY+ NL ++ L + F+ GT+
Sbjct: 300 AQKKRERQTELKRHFEQIKQNQHIRY----QGVNLYIKNLDDTINDEHLRKEFSPFGTIT 355
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
SA+++ + RS+GFGFV S ++A +A R +G + + + V+ + R ER
Sbjct: 356 SAKVMME--NGRSKGFGFVCFSSSKDAAKASREMNGKLVASKPLYVSLAQ--RKEERRM- 410
Query: 201 GPKLQNSY 208
L+N Y
Sbjct: 411 --HLKNQY 416
>gi|357480263|ref|XP_003610417.1| RNA-binding protein [Medicago truncatula]
gi|355511472|gb|AES92614.1| RNA-binding protein [Medicago truncatula]
Length = 411
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 96/182 (52%), Gaps = 17/182 (9%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P +++DE L++G+L Y M + L F+ G V S +++ ++ T++S G+GF+ S
Sbjct: 65 PPPSSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFIS 124
Query: 164 VEEAKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYA 220
A+ ++ F+G+ + GG+ ++N+ G +R DSP + I+
Sbjct: 125 RAGAERVLQTFNGTIMPNGGQNFRLNWATFSSGEKRHD-------------DSPDYTIFV 171
Query: 221 GNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L ++ L + F+ + + AKV+ +R TGR++G+GFV F + A+ M G
Sbjct: 172 GDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQG 231
Query: 280 VV 281
V+
Sbjct: 232 VL 233
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 34/183 (18%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L ++ L EVF +V A++V DR T R++G+GFV E A+
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 174 FDG---------------SQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
G +G +T K ++ + P+GG + P I
Sbjct: 229 MQGVLCSTRPMRIGPASNKNLGTQTSKASY-QNPQGGAQNENDPNNT-----------TI 276
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ GNL +T + L+ F L+ K+ + GFV F + AL +N
Sbjct: 277 FVGNLDPNVTDEHLKQVFTQYGELVHVKIP------SGKRCGFVQFADRSSAEEALRVLN 330
Query: 279 GVV 281
G +
Sbjct: 331 GTL 333
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL ++T L +VF + G E+V+ ++ R GFV A+EA+R+
Sbjct: 276 IFVGNLDPNVTDEHLKQVFTQYG-----ELVHVKIPSGKR-CGFVQFADRSSAEEALRVL 329
Query: 175 DGSQIGGRTVKVNFPEVP 192
+G+ +GG+ V++++ P
Sbjct: 330 NGTLLGGQNVRLSWGRSP 347
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 20/198 (10%)
Query: 89 QEEEEEEEAVEEEEEPKVAASDEA-------ARLYVGNLPYSMTSSSLAEVFAEAGTVAS 141
Q +++++ + +E +A DE L+VGNLP S+ S L E+F G +
Sbjct: 198 QSDDQDKHLCKRQELSFSSAHDEGKLKEGNGTNLFVGNLPPSLASHKLIELFLPFGRIVK 257
Query: 142 AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMG 201
+ +V D T S+G+GFV A EAI+ +G + GR ++V P G M
Sbjct: 258 SRVVDDCFTGSSKGYGFVQYSDPRYAAEAIKHMNGRMVEGRMLEVRLAGAPSSGSTKEMD 317
Query: 202 PKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGF 261
K+Y NL L L D F + S KV+ + TG S+G+GF
Sbjct: 318 MS-------------KLYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGF 364
Query: 262 VTFETAEDLQSALDAMNG 279
V + + A+ +NG
Sbjct: 365 VRYSDPQHAAHAIFQLNG 382
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 3/173 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ ++LYV NLP + L ++F G V S +++ D T S+G+GFV + A A
Sbjct: 317 DMSKLYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHA 376
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ--GFVDSPHKIYAGNLGWGLT 228
I +G I G+ ++V V G ++ + +Q VD + +Y NL +
Sbjct: 377 IFQLNGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEVDMSN-VYVQNLPLLMN 435
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ L + F + SAKV + +G S+G+GFV F D A+ +NG +
Sbjct: 436 TDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCL 488
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 10/177 (5%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
K+ + A LYVG +P ++T L ++F G EIV + D G+G + +
Sbjct: 709 KLVKEIDMANLYVGRVPSAVTCEQLVQIFCLYG-----EIVQAKKFDA--GYGMIRYANA 761
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERA--AMGPKLQNSYQGFVDSPHKIYAGN 222
A AI DG QIGG T+ V +P + A A P+ + +D + +Y G
Sbjct: 762 SSAAAAIDHLDGYQIGGSTLVVRVAGLPAESDVATFARTPQTPGNEHRQIDMTN-LYVGY 820
Query: 223 LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L +T+ L + F + AKV+ +++TG S+GFGFV F A +A+ MNG
Sbjct: 821 LPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRFADAYSAATAITHMNG 877
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 13/174 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ + +YV NLP M + L +F G V SA++ D + S+G+GFV +A A
Sbjct: 421 DMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHA 480
Query: 171 IRLFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+ +G + GR V+V P P E A L+ +D + +Y N+ +
Sbjct: 481 VIELNGCLVEGRKILVRVRPPSSPV--ESHANNRTLKE-----IDMSN-LYVCNIPSSMN 532
Query: 229 SQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L + F P G ++ ++ E+ S+G+GFV F + A+ MNG +
Sbjct: 533 KAKLVELF--LPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMNGAL 584
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYVG LP +T+ L E+F G + A++V D+ T S+GFGFV A A
Sbjct: 812 DMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRFADAYSAATA 871
Query: 171 IRLFDGSQIGGRTVKV 186
I +G + G + V
Sbjct: 872 ITHMNGYPLDGHMLAV 887
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
VE + + + LYV N+P SM + L E+F G + A +V ++ + S+G+G
Sbjct: 505 VESHANNRTLKEIDMSNLYVCNIPSSMNKAKLVELFLPFGRITHAMVV-EQSNNSSKGYG 563
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
FV A EA+ + +G+ I G T+ V
Sbjct: 564 FVKFADSHCAAEAVAMMNGALIEGETISV 592
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A+
Sbjct: 73 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 132
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 133 EDLNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAIDNKA 177
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + Y G S+G+GFV +ETAE +A+ +NG++
Sbjct: 178 LHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAATNAIKHVNGML 226
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 164 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGN-SKGYGFVHYETAEAATNAIKHV 222
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + IY N+ +T + R
Sbjct: 223 NGMLLNEKKVFV--------GHHIAKKDR-QSKFEEMKANFTNIYVKNVEQDVTDEEFRG 273
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + TG+SRGFGFV F E +A++A+N
Sbjct: 274 LFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALN 317
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T +F + G + SA + D T +SRGFGFV E A A+
Sbjct: 257 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 316
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+ ++ G+ + V R ++ +L+ Y+ ++ K +Y NL +
Sbjct: 317 NEYELKGQKLYVG-----RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 371
Query: 229 SQGLRDAFQGQPGLLSAKVIFE 250
+ LR+ F + SAKV+ E
Sbjct: 372 DEKLRELFSSYGNITSAKVMRE 393
>gi|449268380|gb|EMC79248.1| Nucleolin [Columba livia]
Length = 648
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 90/167 (53%), Gaps = 14/167 (8%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E+ L V NL Y+ + +L E+F +A ++ + R +G+ FV + E+AKEA
Sbjct: 415 ESKTLIVNNLAYAASEEALQELFKKASSIK----MPQNNQGRPKGYAFVEFPTTEDAKEA 470
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + ++I GR +++ F +G ++ M N GF ++ L T +
Sbjct: 471 LNSCNNTEIEGRAIRLEFSS--QGWQKGNM-----NVRGGFNQQSKTLFVRGLSEDTTEE 523
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
LR++F+G +SA+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 524 TLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 567
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 13/168 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A L+V NLPY +T + +VF A + IV ++ + S+G ++ + EA +A
Sbjct: 321 DARTLFVKNLPYRLTEDEMKDVFENALEI---RIVMNKEGN-SKGMAYIEFKTEAEANKA 376
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR + ++F GE++ + S G + NL + + +
Sbjct: 377 LEEKQGTEIDGRAMVIDF-----TGEKSHQEHQKVFSTGGGERESKTLIVNNLAYAASEE 431
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L++ F+ S+ + + GR +G+ FV F T ED + AL++ N
Sbjct: 432 ALQELFKK----ASSIKMPQNNQGRPKGYAFVEFPTTEDAKEALNSCN 475
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V L T +L E F G++ SA IV DR T S+GFGFV S E+AK A
Sbjct: 511 LFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 567
Query: 175 DGSQIGGRTVKVNFPEVPRG 194
+ +I G V ++F + P+G
Sbjct: 568 EDGEIDGNKVILDFAK-PKG 586
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A+
Sbjct: 57 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 116
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 117 EDLNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAIDNKA 161
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + Y G S+G+GFV +ETAE +A+ +NG++
Sbjct: 162 LHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAATNAIKHVNGML 210
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGN-SKGYGFVHYETAEAATNAIKHV 206
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + IY N+ +T + R
Sbjct: 207 NGMLLNEKKVFV--------GHHIAKKDR-QSKFEEMKANFTNIYVKNVEQDVTDEEFRG 257
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + TG+SRGFGFV F E +A++A+N
Sbjct: 258 LFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALN 301
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T +F + G + SA + D T +SRGFGFV E A A+
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 300
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+ ++ G+ + V R ++ +L+ Y+ ++ K +Y NL +
Sbjct: 301 NEYELKGQKLYVG-----RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 355
Query: 229 SQGLRDAFQGQPGLLSAKVIFE 250
+ LR+ F + SAKV+ E
Sbjct: 356 DEKLRELFSSYGNITSAKVMRE 377
>gi|212546733|ref|XP_002153520.1| nucleolin protein Nsr1, putative [Talaromyces marneffei ATCC 18224]
gi|210065040|gb|EEA19135.1| nucleolin protein Nsr1, putative [Talaromyces marneffei ATCC 18224]
Length = 472
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 104/199 (52%), Gaps = 5/199 (2%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
E ++ + EEE ++ K ++D ++ L++GNL +++ L F G ++ I+
Sbjct: 197 EAPKKRKAEEEPATSAKKSKTESADNSSNLFIGNLSWNIDEEWLRREFESFGELSGVRIM 256
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ 205
+R T RSRGFG+V AK A +++ GRT+ +++ + PR A K Q
Sbjct: 257 TERETGRSRGFGYVEYADAASAKAAYEAKKDTELDGRTINLDYAK-PRDANAQAPREKAQ 315
Query: 206 NSYQGFVD--SP--HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGF 261
+ F D SP + ++ GNL +G+ +R+ F+ Q + ++ + TGR +G+G+
Sbjct: 316 TRARSFGDQTSPESNTLFLGNLVFGVDENAVREVFESQGTIQGIRLPTDPETGRPKGYGY 375
Query: 262 VTFETAEDLQSALDAMNGV 280
V F + ++ + AL+ + G
Sbjct: 376 VEFSSVDEARQALNDLQGT 394
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L++GNL + + +++ EVF GT+ + D T R +G+G+V SV+EA+
Sbjct: 326 SPESNTLFLGNLVFGVDENAVREVFESQGTIQGIRLPTDPETGRPKGYGYVEFSSVDEAR 385
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
+A+ G+ IGGR ++++F PR
Sbjct: 386 QALNDLQGTDIGGRAIRLDF-STPR 409
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A+
Sbjct: 57 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 116
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 117 EDLNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAIDNKA 161
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + Y G S+G+GFV +ETAE +A+ +NG++
Sbjct: 162 LHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAATNAIKHVNGML 210
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGN-SKGYGFVHYETAEAATNAIKHV 206
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + IY N+ +T + R
Sbjct: 207 NGMLLNEKKVFV--------GHHIAKKDR-QSKFEEMKANFTNIYVKNVEQDVTDEEFRG 257
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + TG+SRGFGFV F E +A++A+N
Sbjct: 258 LFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALN 301
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T +F + G + SA + D T +SRGFGFV E A A+
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 300
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+ ++ G+ + V R ++ +L+ Y+ ++ K +Y NL +
Sbjct: 301 NEYELKGQKLYVG-----RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 355
Query: 229 SQGLRDAFQGQPGLLSAKVIFE 250
+ LR+ F + SAKV+ E
Sbjct: 356 DEKLRELFSSYGNITSAKVMRE 377
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V S E+
Sbjct: 42 AHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSED 101
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
++A+ + + I G+ ++ + + P L+ + QG ++ NL
Sbjct: 102 GEKALEELNYTVIKGKPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDHA 146
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 147 IDNKALHDTFAAFGNILSCKVAQDEL-GNSKGYGFVHYETAEAANNAIKHVNGML 200
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL +++ + +L + FA G + S ++ D + + S+G+GFV + E A AI+
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGN-SKGYGFVHYETAEAANNAIKHV 196
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ER + K + F + IY N+ ++ RD
Sbjct: 197 NGMLLNEKKVFVGH-HIPKK-ERMS---KFEEMKANFTN----IYVKNIDLDVSDDDFRD 247
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + G+SRGFGFV + E +A+DA+N
Sbjct: 248 LFEKHGDITSASIARDD-QGKSRGFGFVNYIKHEAASAAVDALN 290
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ ++ ++F + G + SA I D +SRGFGFV E A A+
Sbjct: 231 IYVKNIDLDVSDDDFRDLFEKHGDITSASIARDD-QGKSRGFGFVNYIKHEAASAAVDAL 289
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ + G+ + V E+ + E A + + Q+ YQG +Y NL
Sbjct: 290 NDTDFRGQKLYVGRAQKKHEREEELRKQYEAARL--EKQSKYQGV-----NLYIKNLNDD 342
Query: 227 LTSQGLRDAFQGQPGLLSAKVI 248
+ + LRD F + SAKV+
Sbjct: 343 VDDEKLRDMFTPFGTITSAKVM 364
>gi|284108895|ref|ZP_06386469.1| RNP-1 like RNA-binding protein [Candidatus Poribacteria sp. WGA-A3]
gi|283829840|gb|EFC34132.1| RNP-1 like RNA-binding protein [Candidatus Poribacteria sp. WGA-A3]
Length = 90
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 52/74 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNL YS T L ++FA+ GTV SA +V DR T RSRGFGFV MGS EEA +AI
Sbjct: 4 KIYVGNLSYSTTDQELQDLFAQHGTVQSANVVTDRYTGRSRGFGFVEMGSGEEAGQAIEA 63
Query: 174 FDGSQIGGRTVKVN 187
+G+ GR++ VN
Sbjct: 64 LNGTDFQGRSLVVN 77
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
KIY GNL + T Q L+D F + SA V+ +RYTGRSRGFGFV + E+ A++
Sbjct: 3 QKIYVGNLSYSTTDQELQDLFAQHGTVQSANVVTDRYTGRSRGFGFVEMGSGEEAGQAIE 62
Query: 276 AMNGV 280
A+NG
Sbjct: 63 ALNGT 67
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 16/187 (8%)
Query: 95 EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSR 154
E E E+ + S+ A LYVG L S+ + L E+F+ G V+S + D +T RS
Sbjct: 42 ESTAEGEQASSSSVSETTASLYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSL 101
Query: 155 GFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDS 214
G+ +V +V++ ++AI + S + G+ +++ + + R G
Sbjct: 102 GYAYVNYHNVKDGEKAIDELNYSVVKGQPIRIMWSQRDPAKRRNGEG------------- 148
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
++ NL + ++ L D F +LS KV + + G+S+GFGFV FE+ E Q+A+
Sbjct: 149 --NVFIKNLHPAIDNKALHDTFSAFGRILSCKVATDNF-GQSKGFGFVHFESPEAAQAAI 205
Query: 275 DAMNGVV 281
+ +NG++
Sbjct: 206 ENVNGML 212
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 23/191 (12%)
Query: 104 PKVAASDEAARL----------YVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
P VA D ++L YV N+ + + E+F GTV S + D +S
Sbjct: 222 PHVARRDRQSKLEEVIKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKD-AEGKS 280
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-V 212
RGF FV E A ++I + G+ + V R +++ +L+ Y+ +
Sbjct: 281 RGFAFVNYEEHEAAVKSIESLNDQDYKGKKLYVG-----RAQKKSERLEELKKQYEAARI 335
Query: 213 DSPHK-----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267
+ K ++ NL + + L++ FQ + S KV+ + +G+S+GFGFV+F +
Sbjct: 336 EKLTKSQGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMIDE-SGKSKGFGFVSFSSP 394
Query: 268 EDLQSALDAMN 278
E+ A+ MN
Sbjct: 395 EEASRAISEMN 405
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + F+ G + S ++ D +S+GFGFV S E A+ AI
Sbjct: 150 VFIKNLHPAIDNKALHDTFSAFGRILSCKVATDNF-GQSKGFGFVHFESPEAAQAAIENV 208
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + V V P V R ++ KL+ + F + +Y N+ + + +++
Sbjct: 209 NGMLLNNNEVYVG-PHVARRDRQS----KLEEVIKSFTN----VYVKNIDLEASEEEVKE 259
Query: 235 AFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F P G +++ + + G+SRGF FV +E E +++++N
Sbjct: 260 LF--TPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIESLN 302
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ L+V NL S+ L E F GT++S +++ D + +S+GFGFV+ S EEA A
Sbjct: 342 QGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMIDE-SGKSKGFGFVSFSSPEEASRA 400
Query: 171 IRLFDGSQIGGRTVKV 186
I + + G+ + V
Sbjct: 401 ISEMNQHMLAGKPLYV 416
>gi|409049562|gb|EKM59039.1| hypothetical protein PHACADRAFT_249208 [Phanerochaete carnosa
HHB-10118-sp]
Length = 292
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 103/193 (53%), Gaps = 12/193 (6%)
Query: 92 EEEEEAVEEEEEPKVA-ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
E E EAVE ++ +V S ++VG L +++ ++ L FA+ G + SA + DR T
Sbjct: 17 EFEGEAVEPAQKARVDDGSAPTKTIFVGMLSWNVDNAWLESEFAQCGEIVSAHVQTDRNT 76
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQG 210
RSRGFGFVT S E +A+ L +G +I GR++ V+ + E+ + + + +
Sbjct: 77 GRSRGFGFVTFASPEAVDKALEL-NGKEIDGRSINVD-----KSVEKDQNQVRERRA-RT 129
Query: 211 FVDSP----HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266
F D+P +++ GNL + T + L + F + S + R +GR +GFG+V FE
Sbjct: 130 FGDAPSEPSSRLFVGNLSFDATEEQLWEVFSDYGSIKSVHMPTSRDSGRPKGFGYVEFED 189
Query: 267 AEDLQSALDAMNG 279
E + A +++ G
Sbjct: 190 IESAKKAHESLVG 202
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S+ ++RL+VGNL + T L EVF++ G++ S + R + R +GFG+V +E
Sbjct: 133 APSEPSSRLFVGNLSFDATEEQLWEVFSDYGSIKSVHMPTSRDSGRPKGFGYVEFEDIES 192
Query: 167 AKEAIRLFDGSQIGGRTVKVNF 188
AK+A G +I GR +++ F
Sbjct: 193 AKKAHESLVGQEIAGRAIRLEF 214
>gi|388507756|gb|AFK41944.1| unknown [Medicago truncatula]
Length = 411
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 96/182 (52%), Gaps = 17/182 (9%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P +++DE L++G+L Y M + L F+ G V S +++ ++ T++S G+GF+ S
Sbjct: 65 PPPSSADEVETLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFIS 124
Query: 164 VEEAKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYA 220
A+ ++ F+G+ + GG+ ++N+ G +R DSP + I+
Sbjct: 125 RAGAERVLQTFNGTIMPNGGQNFRLNWATFSSGEKRHD-------------DSPDYTIFV 171
Query: 221 GNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L ++ L + F+ + + AKV+ +R TGR++G+GFV F + A+ M G
Sbjct: 172 GDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQG 231
Query: 280 VV 281
V+
Sbjct: 232 VL 233
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 34/183 (18%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L ++ L EVF +V A++V DR T R++G+GFV E A+
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 174 FDG---------------SQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
G +G +T K ++ + P+GG + P I
Sbjct: 229 MQGVLCSTRPMRIGPASNKNLGTQTSKASY-QNPQGGAQNENDPNNT-----------TI 276
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ GNL +T + L+ F L+ K+ + GFV F + AL +N
Sbjct: 277 FVGNLDPNVTDEHLKQVFTQYGELVHVKIP------SGKRCGFVQFADRSSAEEALRVLN 330
Query: 279 GVV 281
G +
Sbjct: 331 GTL 333
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL ++T L +VF + G E+V+ ++ R GFV A+EA+R+
Sbjct: 276 IFVGNLDPNVTDEHLKQVFTQYG-----ELVHVKIPSGKR-CGFVQFADRSSAEEALRVL 329
Query: 175 DGSQIGGRTVKVNFPEVP 192
+G+ +GG+ V++++ P
Sbjct: 330 NGTLLGGQNVRLSWGRSP 347
>gi|196232841|ref|ZP_03131691.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196223040|gb|EDY17560.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 107
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 52/74 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL + T L + FAEAGTV+ A ++ D+ T +SRGFGFVTM S EEA++AI L
Sbjct: 4 KLYVGNLSFDTTEMDLQDTFAEAGTVSEATLMQDKFTGKSRGFGFVTMSSSEEAQKAIDL 63
Query: 174 FDGSQIGGRTVKVN 187
F G + GR + VN
Sbjct: 64 FHGKTVQGRALTVN 77
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + T L+D F + A ++ +++TG+SRGFGFVT ++E+ Q A+D
Sbjct: 3 NKLYVGNLSFDTTEMDLQDTFAEAGTVSEATLMQDKFTGKSRGFGFVTMSSSEEAQKAID 62
Query: 276 AMNG 279
+G
Sbjct: 63 LFHG 66
>gi|367043706|ref|XP_003652233.1| hypothetical protein THITE_2113488 [Thielavia terrestris NRRL 8126]
gi|346999495|gb|AEO65897.1| hypothetical protein THITE_2113488 [Thielavia terrestris NRRL 8126]
Length = 533
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 18/182 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
AS+++A L+VGNL + + ++L E F V A +V D+ + RSRGFG+V + E A
Sbjct: 283 ASEKSATLFVGNLGWGVDDNALYEEFQNNEGVTGARVVTDKDSGRSRGFGYVDFETPEAA 342
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVP--------RGGERAAMGPKLQNSYQGFVDSPHK-- 217
++A +G+ + GR ++++F P R ERA G V SP
Sbjct: 343 EKAYNDKNGAFLQGREMRLDFAAKPSADSTPNARAAERA--------RKHGDVISPESDT 394
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
++ GNL + + + F + S ++ ++ +GR +GF +VTF + +D ++A +A+
Sbjct: 395 LFVGNLSFSANEESVSAFFNKVAKVQSLRIPTDQESGRPKGFAYVTFSSVDDAKAAFEAL 454
Query: 278 NG 279
NG
Sbjct: 455 NG 456
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
++ GNLGWG+ L + FQ G+ A+V+ ++ +GRSRGFG+V FET E + A +
Sbjct: 290 LFVGNLGWGVDDNALYEEFQNNEGVTGARVVTDKDSGRSRGFGYVDFETPEAAEKAYNDK 349
Query: 278 NGV 280
NG
Sbjct: 350 NGA 352
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGNL +S S++ F + V S I D+ + R +GF +VT SV++AK
Sbjct: 389 SPESDTLFVGNLSFSANEESVSAFFNKVAKVQSLRIPTDQESGRPKGFAYVTFSSVDDAK 448
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
A +GS + GR V+++F + PR
Sbjct: 449 AAFEALNGSDLDGRPVRLDFAK-PR 472
>gi|326507746|dbj|BAJ86616.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 192
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 149 VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
V ++RG FVTMGS EEA A++ + S + RT+KV+F + + P +N
Sbjct: 30 VPKKNRGLAFVTMGSEEEALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNV- 88
Query: 209 QGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT-GRSRGFGFVTFETA 267
++ GNL W + S+ LR+ F PG+ S +VIF T RS G+GFV+F +
Sbjct: 89 ---------VFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSAGYGFVSFSSK 139
Query: 268 EDLQSALDAMNG 279
E+ ++A+ NG
Sbjct: 140 EEAEAAISTFNG 151
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 97 AVEEEEEPKV-AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT-DRSR 154
A ++++P V +A E ++VGNL + + S L E+FA V S E+++ T RS
Sbjct: 70 AKPKKKQPAVPSAPVEKNVVFVGNLTWRVRSRHLRELFASTPGVQSVEVIFHTTTPRRSA 129
Query: 155 GFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
G+GFV+ S EEA+ AI F+G ++ GR++ V F E
Sbjct: 130 GYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKE 165
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T S L ++F + G V S + D T RS G+G+V S ++A A+ +
Sbjct: 26 LYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARALDML 85
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G +++ + + P ++ S G I+ NL G+ + L D
Sbjct: 86 NFTPLNGSPIRIMY---------SHRDPSVRKSGSG------NIFIKNLDKGIDHKALHD 130
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+S+G+GFV F+ E Q A++ +NG++
Sbjct: 131 TFSAFGNILSCKVATDS-SGQSKGYGFVQFDNEESAQKAIEKLNGML 176
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 20/182 (10%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
+P V S + +++ NL + +L + F+ G + S ++ D + +S+G+GFV
Sbjct: 101 HRDPSVRKSG-SGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDS-SGQSKGYGFVQ 158
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS-YQGFVDSP--HK 217
+ E A++AI +G + + V V GP L+ + +D +
Sbjct: 159 FDNEESAQKAIEKLNGMLLNDKQVYV--------------GPFLRKQERESAIDKTRFNN 204
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y NL T + L+ AF G+ G +++ V+ G+++ FGFV FE A+D +A++A+
Sbjct: 205 VYVKNLSETTTEEDLKKAF-GEYGTITSAVVMRDGDGKTKCFGFVNFENADDAATAVEAL 263
Query: 278 NG 279
NG
Sbjct: 264 NG 265
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL + T L + F E GT+ SA ++ D +++ FGFV + ++A A+
Sbjct: 205 VYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDG-DGKTKCFGFVNFENADDAATAVEAL 263
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQG 231
+G + + V + + ER + + + S + D +Y NL +
Sbjct: 264 NGKKFDDKEWFVG--KAQKKNERENELKVRFEQSMKEAADKFQGANLYIKNLDDSIGDDR 321
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L+ F + S KV+ + G SRG GFV F T E+ AL MNG
Sbjct: 322 LKQLFSPFGTITSCKVMRDP-NGISRGSGFVAFSTPEEASKALMEMNG 368
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASD-EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
++ E E E V E+ K AA + A LY+ NL S+ L ++F+ GT+ S +++
Sbjct: 280 KKNERENELKVRFEQSMKEAADKFQGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMR 339
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D SRG GFV + EEA +A+ +G + + + V
Sbjct: 340 DP-NGISRGSGFVAFSTPEEASKALMEMNGKMVVSKPLYV 378
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T + L ++F + G V S + D + RS G+G+V +V +A +AI +
Sbjct: 31 LYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQAIEVL 90
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G+ +++ + + P ++ S G IY NL + ++ L D
Sbjct: 91 NFTPVNGKPIRIMY---------SYRDPTIRKSGTG------NIYIKNLDKAIDNKALHD 135
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + G+S G+GFV F+ E ++A+D +NG++
Sbjct: 136 TFSAFGSILSCKVATDSL-GQSLGYGFVQFDNEESAKNAIDKLNGML 181
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 19/168 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ NL ++ + +L + F+ G++ S ++ D + +S G+GFV + E AK AI
Sbjct: 119 IYIKNLDKAIDNKALHDTFSAFGSILSCKVATDSL-GQSLGYGFVQFDNEESAKNAIDKL 177
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS-YQGFVDSP--HKIYAGNLGWGLTSQG 231
+G + + V V GP L+ + +D + +Y NL T +
Sbjct: 178 NGMLLNDKQVYV--------------GPFLRKQERESAIDKATFNNVYVKNLSETTTEED 223
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L+ F G+ G +++ V+ G+SR FGFV FE +D +++A+NG
Sbjct: 224 LKKIF-GEYGTITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEALNG 270
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 15/181 (8%)
Query: 107 AASDEAA--RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+A D+A +YV NL + T L ++F E GT+ SA ++ D +SR FGFV +
Sbjct: 200 SAIDKATFNNVYVKNLSETTTEEDLKKIFGEYGTITSAVVMRDG-NGKSRCFGFVNFENP 258
Query: 165 EEAKEAIRLFDGSQIG------GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
++A +++ +G G+ K + EV G + + +QG +
Sbjct: 259 DDAAQSVEALNGKTFDEKEWYVGKAQKKSEREVELKGRFEQTLKETVDKFQGL-----NL 313
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL +T L++ F + S KV+ + G SRG GFV F TAE+ AL MN
Sbjct: 314 YVKNLDDSITDDKLKELFSEFGTITSCKVMRDP-NGVSRGSGFVAFSTAEEASRALTEMN 372
Query: 279 G 279
G
Sbjct: 373 G 373
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL S+T L E+F+E GT+ S +++ D SRG GFV + EEA A
Sbjct: 309 QGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDP-NGVSRGSGFVAFSTAEEASRA 367
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A +LQ Y
Sbjct: 368 LTEMNGKMVVSKPLYVALAQ--RKEERRA---RLQAQY 400
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 204 LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263
+ N FV P +Y G+L +T L D F ++S +V + + RS G+G+V
Sbjct: 19 VSNGVNQFV--PTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVN 76
Query: 264 FETAEDLQSALDAMN 278
+ D A++ +N
Sbjct: 77 YNNVHDAAQAIEVLN 91
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 16/171 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A
Sbjct: 53 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 113 LEDLNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAIDNK 157
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ETAE Q+A+ +NG++
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAAQNAIKHVNGML 207
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A+ AI+
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAAQNAIKHV 203
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + +Y N+ T + RD
Sbjct: 204 NGMLLNDKKVFV--------GHHIAKKDR-QSKFEEMKANFTNVYVKNIDQDTTEEEFRD 254
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + +G+SRGFGFV F + ++ +A++A+N
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALN 298
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ T ++F + G + SA + D + +SRGFGFV S + A A+
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+ G+ + V R ++ +L+ Y+ ++ K +Y NL +
Sbjct: 298 NDKDFKGQKLYVG-----RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 352
Query: 229 SQGLRDAFQGQPGLLSAKVI 248
+ LR+ F + SAKV+
Sbjct: 353 DEKLRELFSSYGTITSAKVM 372
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V S E+
Sbjct: 42 AHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSED 101
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
++A+ + + I G+ ++ + + P L+ + QG ++ NL
Sbjct: 102 GEKALEELNYTVIKGKPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDHA 146
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 147 IDNKALHDTFAAFGNILSCKVAQDEL-GNSKGYGFVHYETAEAANNAIKHVNGML 200
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL +++ + +L + FA G + S ++ D + + S+G+GFV + E A AI+
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGN-SKGYGFVHYETAEAANNAIKHV 196
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ER + K + F + IY N+ ++ + R+
Sbjct: 197 NGMLLNEKKVFVGH-HIPKK-ERMS---KFEEMKANFTN----IYVKNIDLDVSDEEFRE 247
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + G+SRGFGFV + E +A+DA+N
Sbjct: 248 LFEKHGDITSASIARDE-QGKSRGFGFVNYIKHEAASAAVDALN 290
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 81/223 (36%), Gaps = 67/223 (30%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ ++ E+F + G + SA I D +SRGFGFV E A A+
Sbjct: 231 IYVKNIDLDVSDEEFRELFEKHGDITSASIARDE-QGKSRGFGFVNYIKHEAASAAVDAL 289
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ + G+ + V E+ + E A + + Q+ YQG +Y NL
Sbjct: 290 NDTDFRGQKLYVGRAQKKHEREEELRKQYEAARL--EKQSKYQGV-----NLYIKNLNDD 342
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFE------------------------------------ 250
+ + LRD F + SAKV+ +
Sbjct: 343 VDDEKLRDMFTPFGTITSAKVMRDAMPAERSETPGDEKKEESKEEAEKTEESKEGADDKK 402
Query: 251 ---------------RYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ G+S+GFGFV F ++ A+ MN
Sbjct: 403 DENKPGEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMN 445
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 16/171 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A
Sbjct: 53 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 113 LEDLNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAIDNK 157
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ETAE Q+A+ +NG++
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAAQNAIKHVNGML 207
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A+ AI+
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAAQNAIKHV 203
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + +Y N+ T + RD
Sbjct: 204 NGMLLNDKKVFV--------GHHIAKKDR-QSKFEEMKANFTNVYVKNIDQDTTEEEFRD 254
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + +G+SRGFGFV F + ++ +A++A+N
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALN 298
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ T ++F + G + SA + D + +SRGFGFV S + A A+
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+ G+ + V R ++ +L+ Y+ ++ K +Y NL +
Sbjct: 298 NDKDFKGQKLYVG-----RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 352
Query: 229 SQGLRDAFQGQPGLLSAKVI 248
+ LR+ F + SAKV+
Sbjct: 353 DEKLRELFSSYGTITSAKVM 372
>gi|356544204|ref|XP_003540544.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 364
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 19/175 (10%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A ++ A YVGNL + L E+F +AG V + + DRVT++ +G+GFV S E+
Sbjct: 19 AERNQDATAYVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A AI++ + ++ G+ ++VN +A+ K +D ++ GNL
Sbjct: 79 ADYAIKVLNMIKLYGKPIRVN---------KASQDKK-------SLDVGANLFIGNLDPD 122
Query: 227 LTSQGLRDAFQGQPGLL--SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F G++ + K++ + TG SRGFGF+++++ E SA++AMNG
Sbjct: 123 VDEKLLYDTFSAF-GVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNG 176
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L++GNL + L + F+ G V + +I+ D T SRGFGF++ S E +
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASD 168
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI +G + R + V++
Sbjct: 169 SAIEAMNGQYLCNRQITVSY 188
>gi|323346676|gb|EGA80960.1| Hrp1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 576
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
+ SV+E + + DG I + +PR + D
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKVIDPKRA------IPRDEQ----------------DKTG 243
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
KI+ G +G + + + F ++ A+++ ++ TG+SRGFGFVT+++A+
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 295
>gi|45384000|ref|NP_990596.1| nucleolin [Gallus gallus]
gi|128840|sp|P15771.1|NUCL_CHICK RecName: Full=Nucleolin; AltName: Full=Protein C23
gi|63711|emb|CAA35060.1| unnamed protein product [Gallus gallus]
Length = 694
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 18/180 (10%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
++E K E+ L V NL Y+ + +L E+F +A ++ + R +G+ FV
Sbjct: 448 QQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQ----NNQGRPKGYAFV 503
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHK 217
+ E+AKEA+ + ++I GR +++ F P +G N+ GF
Sbjct: 504 EFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGN---------MNARGGFNQQSKT 554
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
++ L T + LR++F+G +SA+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 555 LFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 19/171 (11%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A L+V NLPY +T + VF A V +V ++ S+G ++ + EA++A
Sbjct: 369 DARTLFVKNLPYRVTEDEMKNVFENALEV---RLVLNK-EGSSKGMAYIEFKTEAEAEKA 424
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK-IYAGNLGWGLTS 229
+ G+++ GR + +++ GE++ Q S +G + K + NL + +
Sbjct: 425 LEEKQGTEVDGRAMVIDY-----TGEKSQ-----QESQKGGGERESKTLIVNNLSYAASE 474
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ L++ F+ + + + GR +G+ FV F TAED + AL++ N
Sbjct: 475 ETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNT 521
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V L T +L E F G++ SA IV DR T S+GFGFV S E+AK A
Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Query: 175 DGSQIGGRTVKVNFPEVPRG 194
+ +I G V ++F + P+G
Sbjct: 612 EDGEIDGNKVTLDFAK-PKG 630
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 15/169 (8%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG L +++ + L ++F+ G+V+S + D +T S G+ +V E ++AI
Sbjct: 40 ASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAIE 99
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + I G+ ++ + + P L+ G I+ NL + ++ L
Sbjct: 100 KLNYTPIKGQPCRIMW---------SQRDPSLRKKGSG------NIFIKNLHADIDNKAL 144
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS K+ + TG S+GFGFV FE+ E + A+DA+NG++
Sbjct: 145 HDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGML 193
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 12/170 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL + + +L + F+ G + S +I D VT S+GFGFV S E A+EAI
Sbjct: 127 SGNIFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAI 186
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ V V P V R ++ KL+ + F + +Y N+ Q
Sbjct: 187 DAINGMLLNGQEVYVA-PHVSRKDRQS----KLEEAKANFTN----VYIKNISLETPEQE 237
Query: 232 LRDAFQGQPGLLSAKVIFERYT-GRSRGFGFVTFETAEDLQSALDAMNGV 280
+ F+ + S V E+ + G+ RGFGFV +ET A++ +NGV
Sbjct: 238 FEEFFKKVAPVTS--VHLEKDSEGKLRGFGFVNYETHAGAAKAVEELNGV 285
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 27/193 (13%)
Query: 104 PKVAASDEAARL----------YVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
P V+ D ++L Y+ N+ E F + V S + D +
Sbjct: 203 PHVSRKDRQSKLEEAKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDS-EGKL 261
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQ 205
RGFGFV + A +A+ +G + G+ + V E+ R E++ + +
Sbjct: 262 RGFGFVNYETHAGAAKAVEELNGVEFHGQQLHVGRAQKKYERQQELRRQYEQSKL--EKM 319
Query: 206 NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
YQG ++ NL + + LR+ F + S KV+ G+S+GFGFV F
Sbjct: 320 EKYQGV-----NLFIKNLDDSIDDERLREEFSPFGTITSVKVMTTE-NGKSKGFGFVCFS 373
Query: 266 TAEDLQSALDAMN 278
T E+ A+ N
Sbjct: 374 TPEEATKAITEKN 386
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E ++E + E+ K+ + + L++ NL S+ L E F+ GT+ S +++
Sbjct: 298 QKKYERQQELRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDDERLREEFSPFGTITSVKVM 357
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
+S+GFGFV + EEA +AI + + G+ + V
Sbjct: 358 TTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 397
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 16/166 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L S+T + L E F+ G V S + D +T RS G+ +V S +A AI +
Sbjct: 34 LYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAIDVL 93
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ I G+ ++V + + R+ +G I+ NL + ++ L D
Sbjct: 94 NFQVINGKPIRVLYSQRDPAVRRSGVG---------------NIFIKNLDKAIDNKALLD 138
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F + SAKV + G S+G+GFV FETAE Q+A+D +NG+
Sbjct: 139 TFAQFGTITSAKVAMDS-AGNSKGYGFVQFETAEAAQAAIDNVNGM 183
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA+ GT+ SA++ D + S+G+GFV + E A+ AI
Sbjct: 122 IFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDSAGN-SKGYGFVQFETAEAAQAAIDNV 180
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G ++ + V V R +R+ G N+ +Y NL L+ + LR+
Sbjct: 181 NGMELNDKQVYVG--PFQRRADRSTQGEAKFNN----------VYVKNLSENLSDEKLRE 228
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + G +++ VI + G+S+GFGFV FE+ E SA++ ++G
Sbjct: 229 KF-AEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVENLDG 272
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 7/168 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL +++ L E FAE G V S I+ D +S+GFGFV S E A A+
Sbjct: 212 VYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDE-EGKSKGFGFVCFESPEGAASAVENL 270
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVD--SPHKIYAGNLGWGLTSQG 231
DG +T V + ER A + K + + ++ + +Y NL G +
Sbjct: 271 DGYTEDEKTWVV--CRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEEGTDDEK 328
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR+ F + G +++ + +G SRG FV F + ++ A+ MNG
Sbjct: 329 LRELFN-EFGTITSCRVMRDASGASRGSAFVAFSSPDEATRAVTEMNG 375
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 71 SFDGFQVTED--------SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPY 122
+ DG+ TED +Q + E E E + + EA E K+A A LY+ NL
Sbjct: 269 NLDGY--TEDEKTWVVCRAQKKAEREAELKAKFEAERRERMEKMAG----ANLYIKNLEE 322
Query: 123 SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR 182
L E+F E GT+ S ++ D + SRG FV S +EA A+ +G +G +
Sbjct: 323 GTDDEKLRELFNEFGTITSCRVMRD-ASGASRGSAFVAFSSPDEATRAVTEMNGKMVGAK 381
Query: 183 TVKVNF---PEVPRGGE-RAAMGP 202
+ V E P G A GP
Sbjct: 382 PLYVALAQRKEEPHAGRWHAGYGP 405
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 16/171 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A
Sbjct: 53 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 113 LEDLNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAIDNK 157
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ETAE Q+A+ +NG++
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAAQNAIKHVNGML 207
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A+ AI+
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAAQNAIKHV 203
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + +Y N+ T + RD
Sbjct: 204 NGMLLNDKKVFV--------GHHIAKKDR-QSKFEEMKANFTNVYVKNIDQDTTEEEFRD 254
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + +G+SRGFGFV F + ++ +A++A+N
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALN 298
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ T ++F + G + SA + D + +SRGFGFV S + A A+
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+ G+ + V R ++ +L+ Y+ ++ K +Y NL +
Sbjct: 298 NDKDFKGQKLYVG-----RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 352
Query: 229 SQGLRDAFQGQPGLLSAKVI 248
+ LR+ F + SAKV+
Sbjct: 353 DEKLRELFSSYGTITSAKVM 372
>gi|294933824|ref|XP_002780863.1| single-stranded G-strand telomeric DNA-binding protein, putative
[Perkinsus marinus ATCC 50983]
gi|239890990|gb|EER12658.1| single-stranded G-strand telomeric DNA-binding protein, putative
[Perkinsus marinus ATCC 50983]
Length = 381
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 13/194 (6%)
Query: 96 EAVEEEEEPKVAAS-------DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR 148
+A E+ P ++ D+ +L+VG +P T F++ G V + ++ D+
Sbjct: 49 KATEQGNTPSFSSGGHGDRGFDDRRQLFVGGIPEGFTDDDFHRYFSQFGNVERSIVMTDK 108
Query: 149 VTDRSRGFGFVTMGSVEEAKEAIRLFDG-SQIGGRTVKVNFPEVPRGGERAAMGPKLQNS 207
+T R RGFGFVT + E + L +G Q+ G+ V VN + P+ + G
Sbjct: 109 MTGRCRGFGFVTYATTGEVENC--LANGPHQLNGKHVDVNRSQDPKDAHKGGWGSDRSGG 166
Query: 208 YQGFV---DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
D P K++ G L ++ LR F ++ + +R TGRS+G+GFVTF
Sbjct: 167 PSRRGGGGDDPKKVFCGGLPQDCDTERLRQHFSQYGNIVDCIAMRDRDTGRSKGYGFVTF 226
Query: 265 ETAEDLQSALDAMN 278
++ + + +A++ N
Sbjct: 227 DSEDAVNAAINGDN 240
>gi|42407940|dbj|BAD09079.1| nucleic acid-binding protein-like [Oryza sativa Japonica Group]
Length = 131
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 53/76 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V +A +VYDR + RSRGFGFV+M S EE +AI
Sbjct: 46 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAI 105
Query: 172 RLFDGSQIGGRTVKVN 187
DG ++ GR ++VN
Sbjct: 106 SALDGQELDGRPLRVN 121
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPHKIY 219
M ++EEA +AI + + I GR + VN RAA G +++ + F + + Y
Sbjct: 1 MSTIEEADKAIEMLNRYDINGRLLNVN---------RAAPRGSRVERPPRQFAPA-FRAY 50
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL W + L F +++A V+++R +GRSRGFGFV+ + E+L A+ A++G
Sbjct: 51 VGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDG 110
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
+A +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V S ++
Sbjct: 51 SAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDD 110
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
++A+ + + I G+ ++ + + P L+ + QG ++ NL
Sbjct: 111 GEKALEELNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIKNLDGA 155
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV + G S+G+GFV +ETAE +A+ A+NG++
Sbjct: 156 IDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETAEAANNAIKAVNGML 209
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A AI+
Sbjct: 147 VFIKNLDGAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETAEAANNAIKAV 205
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ + K + F + +Y N+ +T R+
Sbjct: 206 NGMLLNEKKVFVGH-HIPKKDRMS----KFEEMKANFTN----VYVKNIDLEVTDDEFRE 256
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + TG+SRGFGFV F E A+D +N
Sbjct: 257 LFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVDELN 300
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 12/149 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI-RL 173
+YV N+ +T E+F + G + SA + +D T +SRGFGFV E A +A+ L
Sbjct: 240 VYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVDEL 299
Query: 174 FDGSQIG-----GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
D G GR K + E + A + Q+ YQG +Y NL +
Sbjct: 300 NDKDWKGQKLYVGRAQKKHEREEELRKQYEAARAEKQSKYQGV-----NLYVKNLHDDVD 354
Query: 229 SQGLRDAFQGQPGLLSAKVIFE-RYTGRS 256
+ LRD F + SAKV+ + + GRS
Sbjct: 355 DEKLRDMFAPFGTITSAKVMRDTQPVGRS 383
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 17/168 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + DR+T RS G+ V +E+A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + S+ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFVKNLDRSIDSKTL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
D F +LS KV+ + S+G+GFV FET E+ + A++ MNG+
Sbjct: 116 YDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMNGM 161
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 24/191 (12%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ NL M L ++F G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI-------- 218
A++A+ +G + G+ + V R ++ +L++ + HKI
Sbjct: 244 ARKAVEEMNGKDLNGKQIYVG-----RAQKKVERQTELKHKFGQMKQDKHKIERVPQDRS 298
Query: 219 --------YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
Y NL G+ + LR F + SAKV E GRS+GFGFV F + E+
Sbjct: 299 VRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEA 356
Query: 271 QSALDAMNGVV 281
A+ MNG +
Sbjct: 357 TKAVTEMNGKI 367
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 14/166 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ S +L + F+ G + S ++V D + S+G+GFV + EEA+ AI
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 175 DGSQIGGRTVKV-NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + V V F R +A +G + + F + +Y NLG + + L+
Sbjct: 159 NGMFLNDHKVFVGRFKS--RRDRQAELGARAKE----FTN----VYIKNLGEDMDDERLQ 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F LS KV+ + +G+S+GFGFV+FE ED + A++ MNG
Sbjct: 209 DLFGRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVEEMNG 253
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL + L + F+ GT+ SA++ + RS+GFGFV S EEA +A+
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEM 363
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G + + + V + R ER A L N Y
Sbjct: 364 NGKIVATKPLYVALAQ--RKEERQA---HLSNQY 392
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V S E+
Sbjct: 42 AHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSED 101
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
++A+ + + I G+ ++ + + P L+ + QG ++ NL
Sbjct: 102 GEKALEELNYTVIKGKPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDHA 146
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 147 IDNKALHDTFAAFGNILSCKVAQDEL-GNSKGYGFVHYETAEAANNAIKHVNGML 200
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL +++ + +L + FA G + S ++ D + + S+G+GFV + E A AI+
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGN-SKGYGFVHYETAEAANNAIKHV 196
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ER + K + F + IY N+ ++ + RD
Sbjct: 197 NGMLLNEKKVFVGH-HIPKK-ERMS---KFEEMKANFTN----IYVKNIDLDVSDEDFRD 247
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + G+SRGFGFV + E +A+DA+N
Sbjct: 248 LFEKHGDITSASIARDD-QGKSRGFGFVNYIKHEAASAAVDALN 290
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 81/222 (36%), Gaps = 66/222 (29%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ ++ ++F + G + SA I D +SRGFGFV E A A+
Sbjct: 231 IYVKNIDLDVSDEDFRDLFEKHGDITSASIARDD-QGKSRGFGFVNYIKHEAASAAVDAL 289
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ + G+ + V E+ + E A + + Q+ YQG +Y NL
Sbjct: 290 NDTDFRGQKLYVGRAQKKHEREEELRKQYEAARL--EKQSKYQGV-----NLYIKNLNDD 342
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFE------------------------------------ 250
+ + LRD F + SAKV+ +
Sbjct: 343 VDDEKLRDMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDESKEESEEAKDESKEDSDDK 402
Query: 251 --------------RYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ G+S+GFGFV F ++ A+ MN
Sbjct: 403 KDEKADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMN 444
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 12/187 (6%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ + E +A + +YV NL ++T L +F++ GTV+S ++ D + RSRGFG
Sbjct: 185 INKNERVAMAGNKGFTNVYVKNLIENITEDILHRLFSQYGTVSSVVVMRDGM-GRSRGFG 243
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ-GFVDSPH 216
FV E AK+A+ G Q+G +T+ V + + ER M L++ Y+ F+ +
Sbjct: 244 FVNFCHPENAKKAVDSLHGRQVGSKTLFVG--KALKRDERREM---LKHKYRDNFIAKSN 298
Query: 217 ----KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+Y NL + LR+ F ++SAKV+ GRS+GFGFV F E+ +
Sbjct: 299 MRWSNLYVKNLSESMNDTTLREIFGRYGQIVSAKVM-RHENGRSKGFGFVCFSNREESKQ 357
Query: 273 ALDAMNG 279
A +NG
Sbjct: 358 AKRYLNG 364
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL S+TSS L +F G + S ++V + +S+GFGFV + + A A
Sbjct: 112 LYVKNLDISITSSGLERMFNPFGVILSCKVVEE--NGQSKGFGFVQFETEQSAVTARSAL 169
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
GS + G+ K+ + ER AM +GF + +Y NL +T L
Sbjct: 170 HGSMVDGK--KLFVAKFINKNERVAMAGN-----KGFTN----VYVKNLIENITEDILHR 218
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F Q G +S+ V+ GRSRGFGFV F E+ + A+D+++G
Sbjct: 219 LF-SQYGTVSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDSLHG 262
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 21/188 (11%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
+ E +A+E + + AS LYVG+L +T L F+ V S + + VT
Sbjct: 5 KSETQALENHQHSSMFAS-----LYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTG 59
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF 211
+S + ++ S A A+ + + + G+ +++ + + R GF
Sbjct: 60 KSLCYAYINFDSPFSASNAMARLNHTDLKGKAMRIMWSQRDLSYRRRT----------GF 109
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
+ +Y NL +TS GL F +LS KV+ E G+S+GFGFV FET +
Sbjct: 110 GN----LYVKNLDISITSSGLERMFNPFGVILSCKVVEE--NGQSKGFGFVQFETEQSAV 163
Query: 272 SALDAMNG 279
+A A++G
Sbjct: 164 TARSALHG 171
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 71 SFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASD-EAARLYVGNLPYSMTSSSL 129
S G QV + + + +E E + + +A S+ + LYV NL SM ++L
Sbjct: 259 SLHGRQVGSKTLFVGKALKRDERREMLKHKYRDNFIAKSNMRWSNLYVKNLSESMNDTTL 318
Query: 130 AEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189
E+F G + SA+++ RS+GFGFV + EE+K+A R +G + G+ + V
Sbjct: 319 REIFGRYGQIVSAKVMRHE-NGRSKGFGFVCFSNREESKQAKRYLNGFSVDGKLLVVRVA 377
Query: 190 E 190
E
Sbjct: 378 E 378
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 17/168 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + DR+T RS G+ V +E+A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + S+ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFVKNLDRSIDSKTL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
D F +LS KV+ + S+G+GFV FET E+ + A++ MNG+
Sbjct: 116 YDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMNGM 161
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 24/191 (12%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ NL M L ++F G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI-------- 218
A++A+ +G + G+ + V R ++ +L++ + HKI
Sbjct: 244 ARKAVEEMNGKDLNGKQIYVG-----RAQKKVERQTELKHKFGQMKQDKHKIERVPQDRS 298
Query: 219 --------YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
Y NL G+ + LR F + SAKV E GRS+GFGFV F + E+
Sbjct: 299 VRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEA 356
Query: 271 QSALDAMNGVV 281
A+ MNG +
Sbjct: 357 TKAVTEMNGKI 367
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 14/166 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ S +L + F+ G + S ++V D + S+G+GFV + EEA+ AI
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 175 DGSQIGGRTVKV-NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + V V F R +A +G + + F + +Y NLG + + L+
Sbjct: 159 NGMFLNDHKVFVGRFKS--RRDRQAELGARAKE----FTN----VYIKNLGEDMDDERLQ 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F LS KV+ + +G+S+GFGFV+FE ED + A++ MNG
Sbjct: 209 DLFGRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVEEMNG 253
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL + L + F+ GT+ SA++ + RS+GFGFV S EEA +A+
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEM 363
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G + + + V + R ER A L N Y
Sbjct: 364 NGKIVATKPLYVALAQ--RKEERQA---HLSNQY 392
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G++ S+++VY+ SRGFGFV + E A++AI
Sbjct: 164 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 221
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R A +G + GF + +Y NL + QGL+D
Sbjct: 222 NGMLLNDRKVFVGHFK-SRQKREAELGARAL----GFTN----VYVKNLHMDMDEQGLQD 272
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F Q G + + + G+SRGFGFV FE E+ Q A+D MNG
Sbjct: 273 LF-SQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNG 316
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 17/167 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +T + L E+F+ GT+ S + D T RS G+ ++ +A+ A+
Sbjct: 76 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 135
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ I G+ +++ + G ++ MG I+ NL + ++ L D
Sbjct: 136 NFEMIKGQPIRIMWSHRDPGLRKSGMG---------------NIFIKNLENSIDNKALYD 180
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS+KV++ + SRGFGFV FET E Q A++ MNG++
Sbjct: 181 TFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTMNGML 225
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 24/178 (13%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL M L ++F++ G + S +++ D +SRGFGFV EEA++A+
Sbjct: 256 VYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHM 314
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKL-----------QNSYQGFVDSPHKIYAGNL 223
+G ++ G+ + V R +RA +L QN YQG +Y NL
Sbjct: 315 NGKEVRGQLLYVG-----RAQKRAERQSELKRRFEQVKQERQNRYQGV-----NLYVKNL 364
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ + L++ F + SAKV+ E + S+GFGFV F + E+ A+ MNG +
Sbjct: 365 DDSINDERLKEVFSAYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRI 420
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q E + E + E V++E + + + LYV NL S+ L EVF+ G +
Sbjct: 329 AQKRAERQSELKRRFEQVKQERQNRY----QGVNLYVKNLDDSINDERLKEVFSAYGVIT 384
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
SA+++ + + S+GFGFV S EEA +A+ +G +G + + V + R ER A+
Sbjct: 385 SAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ--RKEERKAI 440
Query: 201 GPKLQNSYQGFVDSP 215
L N Y+ + P
Sbjct: 441 ---LTNQYRRQLSRP 452
>gi|385305287|gb|EIF49275.1| nuclear localization sequence binding protein [Dekkera bruxellensis
AWRI1499]
Length = 358
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 23/208 (11%)
Query: 79 EDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGT 138
+D EPE ++ + EE +++E ++VG L +++ L + F +
Sbjct: 87 DDDXXEPEAKKAKSEE-------------SAEEPGTMFVGRLSWNVDDDGLKQFFVDENV 133
Query: 139 --VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF-PEVPRGG 195
V SA ++ + + RS+GFG+V SV A+ A++ +DG++I GR V ++ PR
Sbjct: 134 PGVXSARVITENGSGRSKGFGYVDFDSVAHAEAAVKKYDGAEIDGRAVHLDMAASKPRS- 192
Query: 196 ERAAMGPKLQNSYQGFVDSPHK----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER 251
++ + N + + D+P + ++ GNL + T +R AF+ + ++
Sbjct: 193 --SSPNDRANNRAKKYGDTPSEPSDTLFVGNLSFEATMDDVRGAFESFGSIEXIRIPTRP 250
Query: 252 YTGRSRGFGFVTFETAEDLQSALDAMNG 279
T RGF +V F + E+ ++ALD MNG
Sbjct: 251 GTEDPRGFAYVQFSSVEEAKAALDGMNG 278
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VGNL + T + F G++ I T+ RGF +V SVEEAK A+
Sbjct: 217 LFVGNLSFEATMDDVRGAFESFGSIEXIRIPTRPGTEDPRGFAYVQFSSVEEAKAALDGM 276
Query: 175 DGSQIGGRTVKVNFPEVPR 193
+G I GR+V++++ PR
Sbjct: 277 NGEYINGRSVRLDY-STPR 294
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 16/171 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A
Sbjct: 56 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 115
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 116 LEDLNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAIDNK 160
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + Y G S+G+GFV +ETAE +A+ +NG++
Sbjct: 161 ALHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAATNAIKHVNGML 210
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGN-SKGYGFVHYETAEAATNAIKHV 206
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + IY N+ +T + R
Sbjct: 207 NGMLLNEKKVFV--------GHHIAKKDR-QSKFEEMKANFTNIYVKNVEQDVTDEEFRG 257
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + TG+SRGFGFV F E +A++A+N
Sbjct: 258 LFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALN 301
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T +F + G + SA + D T +SRGFGFV E A A+
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 300
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+ ++ G+ + V R ++ +L+ Y+ ++ K +Y NL +
Sbjct: 301 NEYELKGQKLYVG-----RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 355
Query: 229 SQGLRDAFQGQPGLLSAKVIFE 250
+ LR+ F + SAKV+ E
Sbjct: 356 DEKLRELFSSYGNITSAKVMRE 377
>gi|297806641|ref|XP_002871204.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
gi|297317041|gb|EFH47463.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
Length = 144
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 63/95 (66%), Gaps = 4/95 (4%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A++L+VG L + T L+E F++ G V A+IV DRV+DRS+GFGFVT SV+EA++A+
Sbjct: 33 ASKLFVGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASVDEAQKAL 92
Query: 172 RLFDGSQIGGRTVKVNFPEVPR--GGER--AAMGP 202
F+G Q GR + V++ + + GG R A GP
Sbjct: 93 MEFNGQQFNGRVIFVDYAKAKQSFGGGRYPIARGP 127
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + T QGL +AF ++ A+++ +R + RS+GFGFVTF + ++ Q AL
Sbjct: 35 KLFVGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASVDEAQKALME 94
Query: 277 MNG 279
NG
Sbjct: 95 FNG 97
>gi|226288243|gb|EEH43755.1| 28 kDa ribonucleoprotein [Paracoccidioides brasiliensis Pb18]
Length = 492
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
++++ + E+EE V ++ KV + E L++GNL +++ L F E G +A IV
Sbjct: 221 KSQKRKAEDEEEVVAPKKTKVEPT-EGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIV 279
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ 205
DR T RS+GFG+V + E+A +A +++ GR + V+F AA + Q
Sbjct: 280 TDRDTGRSKGFGYVEFTNAEDAVKAHAAKKDTELDGRKLNVDFANA---RSNAAPRDRAQ 336
Query: 206 NSYQGFVD--SPHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGF 261
+ Q F D SP ++ GN+ + + + F +L ++ + +GR +GFG+
Sbjct: 337 SRAQNFGDQRSPESDTLFIGNIAFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGY 396
Query: 262 VTFETAEDLQSALDAMNG 279
V F + ++ +SA +++NG
Sbjct: 397 VQFSSIDEARSAFESLNG 414
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L++GN+ +S + ++E FAE G++ + D + R +GFG+V S++EA+
Sbjct: 347 SPESDTLFIGNIAFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEAR 406
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
A +GS++ GR ++++F PR
Sbjct: 407 SAFESLNGSELAGRAMRLDF-STPR 430
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 16/174 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V S +
Sbjct: 56 AHPNSASLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDG 115
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ A+ + + I GR ++ + + P L+ + G ++ NL +
Sbjct: 116 ERALEELNYTLIKGRPCRIMW---------SQRDPALRKTGHG------NVFIKNLDGAI 160
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
++ L D F +LS KV + G S+G+GFV +ETAE A+ ++NG++
Sbjct: 161 DNKALHDTFAAFGNILSCKVAVDEL-GNSKGYGFVHYETAEAASQAIKSVNGML 213
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + + S+G+GFV + E A +AI+
Sbjct: 151 VFIKNLDGAIDNKALHDTFAAFGNILSCKVAVDELGN-SKGYGFVHYETAEAASQAIKSV 209
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ + K + F + IY N+ +T R+
Sbjct: 210 NGMLLNEKKVFVGH-HIPKKDRMS----KFEEMKANFTN----IYVKNIETEVTDDEFRE 260
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + TG+SRGFGFV + ED A+D +N
Sbjct: 261 LFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDELN 304
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T E+F + G + SA + +D T +SRGFGFV + E+A +A+
Sbjct: 244 IYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDEL 303
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ S G+ + V R ++ +L+ Y+ Y G NL +
Sbjct: 304 NDSDFHGQKLYVG-----RAQKKHEREEELRKQYEAARQEKSAKYQGVNLYVKNLADEVD 358
Query: 229 SQGLRDAFQGQPGLLSAKVI 248
+ LR F+ + SAKV+
Sbjct: 359 DEELRKIFEAYGAITSAKVM 378
>gi|393246659|gb|EJD54168.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 531
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 11/175 (6%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E ++VG L +++ L FAEAG V SA + DR T +S+GFG+V AK+
Sbjct: 269 EEVKSIFVGRLSWNVDDEWLKTEFAEAGEVVSARVQMDRQTGKSKGFGYVEFADAASAKK 328
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLGW 225
A+ +G +I GR V ++ PRG P + + F DS + ++ GNL +
Sbjct: 329 AVETMNGREIDGRPVNLDL-ATPRG------PPNPERRAKAFGDSRSEPSATLFVGNLAF 381
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T + + F +++ ++ +R +G+ +GFG+V F E AL+ + G
Sbjct: 382 SATQDAVYELFGAVGEVVNVRLPTDRDSGQPKGFGYVEFADVETASKALNELGGT 436
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S+ +A L+VGNL +S T ++ E+F G V + + DR + + +GFG+V VE A
Sbjct: 368 SEPSATLFVGNLAFSATQDAVYELFGAVGEVVNVRLPTDRDSGQPKGFGYVEFADVETAS 427
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
+A+ G+ GR ++++F PR
Sbjct: 428 KALNELGGTDFEGRNIRLDF-SAPR 451
>gi|84468322|dbj|BAE71244.1| putative DNA binding protein [Trifolium pratense]
Length = 402
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 101/192 (52%), Gaps = 21/192 (10%)
Query: 96 EAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRG 155
++ + ++P A++DE L++G+L Y M + L F G V S +++ ++ T +S G
Sbjct: 42 QSAQPPQQP--ASADEVRTLWIGDLQYWMDENYLYTCFGNTGEVTSVKVIRNKQTSQSEG 99
Query: 156 FGFVTMGSVEEAKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAM---GPKLQNSYQG 210
+GF+ + A+ ++ + G+ + GG++ ++N+ GER++ GP
Sbjct: 100 YGFIEFNTRASAERVLQTYQGAIMPNGGQSYRLNWATF-SAGERSSRQDDGPD------- 151
Query: 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAED 269
H I+ G+L +T L++ F+ + + AKV+ +R TGRS+G+GFV F +
Sbjct: 152 -----HTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGE 206
Query: 270 LQSALDAMNGVV 281
A+ M GV+
Sbjct: 207 QMRAMTEMQGVL 218
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 18/175 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DR+T RS+G+GFV E A+
Sbjct: 154 IFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTE 213
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFV-----DSPHK--IYAGNLGWG 226
G R +++ P + A + + SY + P+ I+ GNL
Sbjct: 214 MQGVLCSTRPMRIG----PATNKNPAATTQAKASYSNTPGGQSENDPNNTTIFVGNLDPN 269
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+T LR F L+ K+ + GFV F + A+ +NG +
Sbjct: 270 VTDDHLRQVFSQYGELVHVKIP------SGKRCGFVQFSDRSSAEEAIRVLNGTL 318
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL ++T L +VF++ G E+V+ ++ R GFV A+EAIR+
Sbjct: 261 IFVGNLDPNVTDDHLRQVFSQYG-----ELVHVKIPSGKR-CGFVQFSDRSSAEEAIRVL 314
Query: 175 DGSQIGGRTVKVNFPEVP 192
+G+ +GG+ V++++ P
Sbjct: 315 NGTLLGGQNVRLSWGRTP 332
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 16/172 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D +A LYVG L S+ + L E+F+ G V+S + D VT +S G+ +V +E+ ++
Sbjct: 47 DTSASLYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEK 106
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI + S I GR ++ + + P L+ + +G I+ NL + +
Sbjct: 107 AIEELNYSLIDGRPCRIMW---------SQRDPSLRRNGEG------NIFIKNLHPAIDN 151
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ L D F +LS KV + G S+ FGFV +ETAE ++A++ +NG++
Sbjct: 152 KALHDTFSAFGKILSCKVATDE-QGNSKCFGFVHYETAEAAKAAIENVNGML 202
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ + + ++F G + S + D +S+GFGFV S E A +A+
Sbjct: 233 VYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKD-AEGKSKGFGFVNFESHEAAVKAVEEL 291
Query: 175 DGSQIGGRTVKV--------NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ I G+ + V E+ R E A + KL + YQG ++ NL
Sbjct: 292 NDKDINGQKLYVGRAQKKRERIEELKRQYEAARL-EKL-SKYQGV-----NLFVKNLDDS 344
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ S L + F+ + SA+V+ + + G+S+GFGFV F + E+ A+ MN
Sbjct: 345 IDSVKLEEEFKPFGTITSARVMVDEH-GKSKGFGFVCFSSPEEATKAITEMN 395
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ L+V NL S+ S L E F GT+ SA ++ D +S+GFGFV S EEA +A
Sbjct: 332 QGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDE-HGKSKGFGFVCFSSPEEATKA 390
Query: 171 I-----RLFDGSQI 179
I R+F G +
Sbjct: 391 ITEMNQRMFHGKPL 404
>gi|302795494|ref|XP_002979510.1| hypothetical protein SELMODRAFT_111082 [Selaginella moellendorffii]
gi|300152758|gb|EFJ19399.1| hypothetical protein SELMODRAFT_111082 [Selaginella moellendorffii]
Length = 432
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y M + L +FA G V SA+++ ++ T G+GF+ S A+
Sbjct: 25 EEVRTLWIGDLQYWMDENYLRNLFAHTGEVLSAKVIRNKQTGYPEGYGFIEFNSHPAAER 84
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ ++G+Q+ + ++N+ G +R GP+L I+ G+L +
Sbjct: 85 VLLAYNGTQMPQTEQAFRLNWASFGMGEKRMDGGPEL------------SIFVGDLAPDV 132
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L + F+ + P + AKV+ + TGRS+G+GFV F + A+ MNGV
Sbjct: 133 TDYMLHETFRTRFPSVRGAKVVIDAVTGRSKGYGFVRFADENERARAMSEMNGV 186
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 30/191 (15%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D VT RS+G+GFV E A+
Sbjct: 123 IFVGDLAPDVTDYMLHETFRTRFPSVRGAKVVIDAVTGRSKGYGFVRFADENERARAMSE 182
Query: 174 FDGSQIGGRTVKVN--FPE---------------VPRGGERAAMGPKLQNSYQGFVDSPH 216
+G R ++++ P+ VP+ + + P S Q V P
Sbjct: 183 MNGVYCSSRPMRISAATPKKAMAAGLTTVTAATIVPQPTIASPITPPPSLSIQSQVLPPD 242
Query: 217 K------IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
I+ G L +T + ++ F L+S K+ +G FV +
Sbjct: 243 SDPTNTTIFVGGLDLNITEEEVKQTFSHIGELVSVKI------PPGKGCAFVQYAQRNSA 296
Query: 271 QSALDAMNGVV 281
+ AL ++G V
Sbjct: 297 EDALQRLHGTV 307
>gi|356541997|ref|XP_003539458.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Glycine max]
Length = 392
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 21/176 (11%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A +E L++G+L Y + S L++ FA +G V S +I+ +++T + G+GFV S A
Sbjct: 5 AIEEVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASA 64
Query: 168 KEAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ +R F+G+Q+ G +T ++N+ G H I+ G+L
Sbjct: 65 EAFLRTFNGAQMPGTDQTFRLNWASFGDSGPD------------------HSIFVGDLAP 106
Query: 226 GLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T L++ F+ P + +KV+ + TGRS+G+GFV F A+ MNGV
Sbjct: 107 DVTDFILQETFRAHYPSVKGSKVVTDPATGRSKGYGFVKFADEAQRNRAMTEMNGV 162
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 42/192 (21%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V +++V D T RS+G+GFV + A+
Sbjct: 99 IFVGDLAPDVTDFILQETFRAHYPSVKGSKVVTDPATGRSKGYGFVKFADEAQRNRAMTE 158
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY-------------- 219
+G R +++ +A PK S+Q P +Y
Sbjct: 159 MNGVYCSTRPMRI-----------SAATPKKNASFQHQYAPPKAMYQFPAYTAPVSTVAP 207
Query: 220 ----------AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
GNL +T + L+ AF ++ K+ Y G +G+G+V F T
Sbjct: 208 ENDVNNTTVCIGNLDLNVTEEELKQAFVQFGDIVLVKI----YAG--KGYGYVQFGTRAS 261
Query: 270 LQSALDAMNGVV 281
+ A+ M G V
Sbjct: 262 AEDAIQRMQGKV 273
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 117 VGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
+GNL ++T L + F + G + +I +G+G+V G+ A++AI+ G
Sbjct: 218 IGNLDLNVTEEELKQAFVQFGDIVLVKIY------AGKGYGYVQFGTRASAEDAIQRMQG 271
Query: 177 SQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF 211
IG + +++++ + M P ++Y G+
Sbjct: 272 KVIGQQVIQISWGSTLTARQ---MDPSQWSAYYGY 303
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 26/188 (13%)
Query: 104 PKVAASDEA----------ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
P AASD A A LYVG L S+T + L E+F+ G VAS + D VT RS
Sbjct: 31 PDTAASDAATTPNPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRS 90
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD 213
G+ +V + + + A+ + + I GR ++ + + P L+ + QG
Sbjct: 91 LGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQ---------RDPALRKTGQG--- 138
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
++ NL + ++ L D F +LS KV + + G S+G+GFV +ETAE +A
Sbjct: 139 ---NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNA 194
Query: 274 LDAMNGVV 281
+ +NG++
Sbjct: 195 IKHVNGML 202
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 140 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 198
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + +Y N+ +T + R+
Sbjct: 199 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----VYVKNIDPEVTDEEFRE 249
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F G+ G +++ I +G+SRGFGFV + E+ Q+A+D +N
Sbjct: 250 LF-GKFGDITSATISRDDSGKSRGFGFVNYVDHENAQTAVDDLN 292
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 81/215 (37%), Gaps = 57/215 (26%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T E+F + G + SA I D + +SRGFGFV E A+ A+
Sbjct: 233 VYVKNIDPEVTDEEFRELFGKFGDITSATISRDD-SGKSRGFGFVNYVDHENAQTAVDDL 291
Query: 175 DGSQIGGRTVKVNFPEVPRGGE----RAAMGPKLQNS--YQGFVDSPHKIYAGNLGWGLT 228
+ G+ + V + E R +L+ + YQG +Y NL +
Sbjct: 292 NDKDFHGQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGV-----NLYVKNLTDDVD 346
Query: 229 SQGLRDAFQGQPGLLSAKVIFE-------------------------------------- 250
+ LR+ F + SAKV+ +
Sbjct: 347 DEKLRELFSAFGTITSAKVMRDTVGAGSDSEKEETKESSEEVEEPKEEETNAKTEDEDKT 406
Query: 251 -------RYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ G+S+GFGFV F + ++ A+ MN
Sbjct: 407 DAKKSDKKVFGKSKGFGFVCFSSPDEASKAVTEMN 441
>gi|347756146|ref|YP_004863709.1| RNA-binding proteins (RRM domain) [Candidatus Chloracidobacterium
thermophilum B]
gi|347588663|gb|AEP13192.1| RNA-binding proteins (RRM domain) [Candidatus Chloracidobacterium
thermophilum B]
Length = 112
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL + TS L + F++AGTV SA++V DR T+RSRGFGFV S E+ AI +
Sbjct: 2 KLYVGNLSFQTTSEDLRDHFSKAGTVESAQVVEDRDTNRSRGFGFVEFTSTEDGNRAIEM 61
Query: 174 FDGSQIGGRTVKVN 187
F G++ GRT+ VN
Sbjct: 62 FHGTEFNGRTLTVN 75
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K+Y GNL + TS+ LRD F + SA+V+ +R T RSRGFGFV F + ED A++
Sbjct: 2 KLYVGNLSFQTTSEDLRDHFSKAGTVESAQVVEDRDTNRSRGFGFVEFTSTEDGNRAIEM 61
Query: 277 MNGV 280
+G
Sbjct: 62 FHGT 65
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L +++ + L E+F G VAS + D VT RS G+ +V + + + A+
Sbjct: 51 SASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERAL 110
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ S I GR ++ + + P L+ + QG I+ NL + ++
Sbjct: 111 EQLNYSLIKGRACRIMWSQ---------RDPALRKTGQG------NIFIKNLDDAIDNKA 155
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + GRS+G+GFV +ET E +SA+ A+NG++
Sbjct: 156 LHDTFAAFGNVLSCKVATDE-MGRSKGYGFVHYETNEAAESAIKAVNGML 204
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ E+F G V SA + D RSRGFGFV + EEA++A+
Sbjct: 235 VYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDE-EGRSRGFGFVNFETHEEAQKAVDTL 293
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
S GR + V+ E+ R E+A M + + YQG +Y NL
Sbjct: 294 HDSDFKGRKLFVSRAQKKSEREEELRRSYEQAKM--EKMSKYQGV-----NLYIKNLEDD 346
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + LRDAF+ + SAKV+ G S+GFGFV F + ++ A+ MN
Sbjct: 347 VDDEKLRDAFEPFGAITSAKVM-RTEGGTSKGFGFVCFSSPDEATKAVAEMN 397
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G V S ++ D + RS+G+GFV + E A+ AI+
Sbjct: 142 IFIKNLDDAIDNKALHDTFAAFGNVLSCKVATDEMG-RSKGYGFVHYETNEAAESAIKAV 200
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V V + +A KL + F + +Y N+ R+
Sbjct: 201 NGMLLNDKKVYVGH-HVSKKDRQA----KLDEQKKQFTN----VYVKNIDPEANDDEFRE 251
Query: 235 AFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F P G +++ V+ GRSRGFGFV FET E+ Q A+D ++
Sbjct: 252 LFT--PFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLH 294
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE E+ K+ + + LY+ NL + L + F G + SA+++
Sbjct: 309 QKKSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDEKLRDAFEPFGAITSAKVM 368
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
S+GFGFV S +EA +A+ + +G + + V+
Sbjct: 369 RTE-GGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLYVSL 410
>gi|255566167|ref|XP_002524071.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223536639|gb|EEF38281.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 107
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 47/51 (92%)
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+GL+DAF QPG+LSAKVI+ER TGRSRGFGFV+FE+AED ++AL++MNGV
Sbjct: 16 EGLKDAFADQPGVLSAKVIYERDTGRSRGFGFVSFESAEDAEAALNSMNGV 66
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 41/60 (68%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L + FA+ V SA+++Y+R T RSRGFGFV+ S E+A+ A+ +G ++ GR +++N
Sbjct: 18 LKDAFADQPGVLSAKVIYERDTGRSRGFGFVSFESAEDAEAALNSMNGVEVEGRPLRLNL 77
>gi|327305247|ref|XP_003237315.1| nucleic acid-binding protein [Trichophyton rubrum CBS 118892]
gi|326460313|gb|EGD85766.1| nucleic acid-binding protein [Trichophyton rubrum CBS 118892]
Length = 293
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 91 EEEEEEAVEEEEE------------PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGT 138
EE E AVEE++ P A +YVGN+ + +T++ L E ++ G
Sbjct: 48 EEAREPAVEEKKTMVRSVRNSFGLPPSRPEPQPKATVYVGNILFDITAADLKEYASKYGK 107
Query: 139 VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERA 198
V I+YD SRGFG+V SVEEAK+AI S+ GR + VNF +V E+
Sbjct: 108 VLGTRIIYDS-RGLSRGFGYVKFESVEEAKKAIDEMHLSEYEGRKLSVNFAQVDLRDEQP 166
Query: 199 AMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRG 258
Q ++ I+ GN+ +T + L F P + +V +R TG RG
Sbjct: 167 ----------QRKMEPTRTIFVGNIAHQVTDRDLHALFDDIPNVFDVRVAVDRRTGMPRG 216
Query: 259 FGFVTFETAEDLQSALDAMNG 279
F F E + + + G
Sbjct: 217 FAHAEFTDVESAIAGFEMLKG 237
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGN+ + +T L +F + V + DR T RGF VE A +
Sbjct: 176 IFVGNIAHQVTDRDLHALFDDIPNVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEML 235
Query: 175 DGSQIGGRTVKVNF 188
G GR +++++
Sbjct: 236 KGQAPYGRPLRLDY 249
>gi|389603137|ref|XP_001568596.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505742|emb|CAM43715.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 554
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 16/186 (8%)
Query: 94 EEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
+E A ++P+V+ + A +YVG+L ++ L E+F GT+ + + D +T RS
Sbjct: 6 QETAAPVAQQPQVSKPMQIASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRS 65
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD 213
G+G+V + A+ AI + ++G + V++ + + P L+ S G
Sbjct: 66 LGYGYVNFDNHHSAERAIESMNFRRVGDKCVRLMWQQ---------RDPSLRYSGNG--- 113
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
++ NL + S+ L D F +LS KV+ E G+SRG+GFV F+ + A
Sbjct: 114 ---NVFVKNLEKDVDSKSLHDIFTKFGSILSCKVM-EDEEGKSRGYGFVHFKDEISAKDA 169
Query: 274 LDAMNG 279
+ MNG
Sbjct: 170 IVKMNG 175
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 4/165 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ + ++ + FA+ G + SA D+ R F F ++A +A+
Sbjct: 209 VYIKQVLPTVNKEVIENFFAKFGGITSAAACKDK---SGRVFAFCNFEKHDDAVKAVEAM 265
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
I G T V R R+ L+ Y + +Y N T L +
Sbjct: 266 HDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLE 325
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F+ + S +V+ +G SRGFGFV+F A++ +AL MNG
Sbjct: 326 LFKEYGDVKSCRVMMSE-SGASRGFGFVSFSNADEANAALREMNG 369
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N T + L E+F E G V S ++ + SRGFGFV+ + +EA A+R
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGDVKSCRVMMSE-SGASRGFGFVSFSNADEANAALREM 367
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAM 200
+G + G+ + VN + R +R M
Sbjct: 368 NGRMLNGKPLIVNIAQ--RRDQRYTM 391
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 22/169 (13%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + S SL ++F + G++ S +++ D +SRG+GFV AK+AI
Sbjct: 115 VFVKNLEKDVDSKSLHDIFTKFGSILSCKVMEDE-EGKSRGYGFVHFKDEISAKDAIVKM 173
Query: 175 DGSQIGGRTVK-----VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
+G+ K NF + R AA+ N +Y + +
Sbjct: 174 NGAADHASEDKKALYVANF--IRRNARLAALVANFTN-----------VYIKQVLPTVNK 220
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + + F G+ SA ++ R F F FE +D A++AM+
Sbjct: 221 EVIENFFAKFGGITSAAACKDK---SGRVFAFCNFEKHDDAVKAVEAMH 266
>gi|239051430|ref|NP_001131946.2| uncharacterized protein LOC100193339 [Zea mays]
gi|194695014|gb|ACF81591.1| unknown [Zea mays]
gi|223947685|gb|ACN27926.1| unknown [Zea mays]
gi|238908636|gb|ACF80580.2| unknown [Zea mays]
gi|413926096|gb|AFW66028.1| heterogeneous nuclear ribonucleoprotein A3 isoform 1 [Zea mays]
gi|413926097|gb|AFW66029.1| heterogeneous nuclear ribonucleoprotein A3 isoform 2 [Zea mays]
gi|413926098|gb|AFW66030.1| heterogeneous nuclear ribonucleoprotein A3 isoform 3 [Zea mays]
Length = 384
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 29/211 (13%)
Query: 79 EDSQDEPETEQEEEEEEE---------------AVEEEEEPKVAASDEAARLYVGNLPYS 123
ED+Q E EE +EEE AV E+ + A D +++VG + +
Sbjct: 6 EDNQHELNGYDEEVDEEEGHPGRRVGRDGGSGYAVAVGEDGRGAGGDSLGKIFVGGVAWE 65
Query: 124 MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183
T S ++ F + G + + I+ D+ T RGFGFVT + L D I GRT
Sbjct: 66 TTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKV--LEDDHVIDGRT 123
Query: 184 VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL 243
V+V VPR GPK + KI+ G L LT L+D F ++
Sbjct: 124 VEVKRT-VPREEMITKDGPKTR-----------KIFIGGLPPSLTEDELKDHFSSYGNVV 171
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+++ + TGRSRGFGF+TFE+ + ++ +
Sbjct: 172 EHQIMLDHSTGRSRGFGFITFESEDSVERVI 202
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++++G LP S+T L + F+ G V +I+ D T RSRGFGF+T S + + I
Sbjct: 145 KIFIGGLPPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISE 204
Query: 174 FDGSQIGGRTVKVNFPEVPRGG 195
+GG+ V++ E + G
Sbjct: 205 GRMRDLGGKQVEIKKAEPKKHG 226
>gi|390604396|gb|EIN13787.1| splicing factor CC1-like protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 433
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 15/186 (8%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA---GTVASAEIVYDRVTDRSRGFGF 158
EEPK S EA ++V L +T+ L F + GTV A IV DR++ RS+G G+
Sbjct: 93 EEPKEDDS-EARSVFVSQLAARLTARDLGYFFEDKLGEGTVMDARIVTDRLSRRSKGIGY 151
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMG-----PKLQNSYQGFVD 213
V + ++E +AI L G+ + G +KV E R A G P + ++
Sbjct: 152 VELKTIELVDQAINL-SGTVVMGLPIKVQHTEAERNRTHAGDGSLNLPPGVSGTH----- 205
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
P ++Y G+L + LT ++ F+ L + + TGRS+G+ F+ ++ AED + A
Sbjct: 206 GPRQLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYCFIQYKRAEDAKMA 265
Query: 274 LDAMNG 279
L+ M G
Sbjct: 266 LEQMEG 271
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 51/84 (60%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P V+ + +LYVG+L +++T S + +VF G + ++ D +T RS+G+ F+
Sbjct: 199 PGVSGTHGPRQLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYCFIQYKR 258
Query: 164 VEEAKEAIRLFDGSQIGGRTVKVN 187
E+AK A+ +G ++ GRT++VN
Sbjct: 259 AEDAKMALEQMEGFELAGRTLRVN 282
>gi|125549538|gb|EAY95360.1| hypothetical protein OsI_17193 [Oryza sativa Indica Group]
Length = 290
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 11/166 (6%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV N+P+S + + ++FA+ G V E++ + +GF FVTM + EEA A+
Sbjct: 81 KLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIK-GKDGKKKGFAFVTMATAEEAAAAVEK 139
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ + GRT++V F + R G L+ HK+Y NL W + ++
Sbjct: 140 LNSLDVMGRTIRVEFSKSFRKPAPPPPGTILER---------HKLYVSNLPWKARAPNMK 190
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F + LSAKV+F+ +G+S G+GFV+F T E+ ++AL ++G
Sbjct: 191 E-FCSKFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDG 235
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +LYV NLP+ + ++ E F SA++V+D + +S G+GFV+ G+ EEA+ A
Sbjct: 171 ERHKLYVSNLPWKARAPNMKE-FCSKFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAA 229
Query: 171 IRLFDGSQIGGRTVKVNF 188
+ DG ++ GR V++ +
Sbjct: 230 LTELDGKELMGRPVRLRW 247
>gi|222639809|gb|EEE67941.1| hypothetical protein OsJ_25829 [Oryza sativa Japonica Group]
Length = 164
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 71/136 (52%)
Query: 143 EIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGP 202
+I D T SRG GFVTM S+ EA+ A+ DG + GR + V R
Sbjct: 9 QISRDPETGLSRGCGFVTMRSLPEARTAMNALDGFDLDGREMLVKLSSDVVSKRRNINMT 68
Query: 203 KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFV 262
+SPHKIY GN+ W + Q LR+ F ++S +++ +R GR R +GF+
Sbjct: 69 HTPPVKDHIFESPHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFL 128
Query: 263 TFETAEDLQSALDAMN 278
+F +AE+L++AL N
Sbjct: 129 SFASAEELEAALKLDN 144
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGN+ +S+ L E F++ GTV S ++ DR R R +GF++ S EE + A++L
Sbjct: 83 KIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAALKL 142
Query: 174 FDGSQIGGRTVKV 186
D + GR + V
Sbjct: 143 -DNTHFHGRNILV 154
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F G V+S + D VT RS G+ +V + +A+ A+
Sbjct: 27 SASLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVTRRSLGYAYVNFHRMADAERAL 86
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ S I GR+ ++ + + P L+ G I+ NL + +
Sbjct: 87 ETLNYSMIKGRSCRIMW---------SQRDPSLRKGNNG------NIFIKNLDPSIDHKA 131
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS K+ + G S+G+GFV +ET E +SA+ ++NG++
Sbjct: 132 LHDTFSAFGNILSCKIAHDE-QGNSKGYGFVHYETLEAAESAIKSVNGML 180
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ +L + F+ G + S +I +D + S+G+GFV ++E A+ AI+
Sbjct: 118 IFIKNLDPSIDHKALHDTFSAFGNILSCKIAHDEQGN-SKGYGFVHYETLEAAESAIKSV 176
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R ER + KL S F + IY N+ + +T + L
Sbjct: 177 NGMLLNDRKVFVGH-HISR-KERES---KLGESRVQFTN----IYVKNIPFDVTDEELSQ 227
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F G+ G +++ VI G S+GFGFV FE +D Q+A+D ++
Sbjct: 228 LF-GKYGTITSCVITRDDDGTSKGFGFVNFEKHQDAQNAVDDLH 270
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 17/191 (8%)
Query: 100 EEEEPKVAASD-EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+E E K+ S + +YV N+P+ +T L+++F + GT+ S I D S+GFGF
Sbjct: 195 KERESKLGESRVQFTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRDD-DGTSKGFGF 253
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQG 210
V ++A+ A+ G+ + V+ E+ R E A + + + YQG
Sbjct: 254 VNFEKHQDAQNAVDDLHKKDFRGQDLYVSRAQKKNEREEELRRQYEEAKL--EKMSKYQG 311
Query: 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
+Y NL + LRD F + SAK++ + T SRGFGFV F + ED
Sbjct: 312 V-----NLYVKNLDDDMDDDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDA 366
Query: 271 QSALDAMNGVV 281
A+ MNG +
Sbjct: 367 TRAVTEMNGRI 377
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE + EE K+ + + LYV NL M L + F+ G + SA+I+
Sbjct: 285 QKKNEREEELRRQYEEAKLEKMSKYQGVNLYVKNLDDDMDDDRLRDEFSVYGVITSAKIM 344
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D T+ SRGFGFV S E+A A+ +G IG + + V
Sbjct: 345 RDEKTNISRGFGFVCFTSPEDATRAVTEMNGRIIGSKPIYV 385
>gi|365192966|gb|AEW68341.1| putative nuclear acid binding protein [Medicago sativa]
Length = 409
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 95/182 (52%), Gaps = 17/182 (9%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P ++DE L++G+L Y M + L F+ G V S +++ +++ ++S G+GF+ S
Sbjct: 63 PPPTSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKLNNQSEGYGFLEFIS 122
Query: 164 VEEAKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYA 220
A+ ++ ++G+ + GG+ ++N+ G +R DSP + I+
Sbjct: 123 RAGAERVLQTYNGTIMPNGGQNFRLNWATFSSGEKRHD-------------DSPDYTIFV 169
Query: 221 GNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L ++ L + F+ + + AKV+ +R TGRS+G+GFV F + A+ M G
Sbjct: 170 GDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRNTGRSKGYGFVRFADESEQMRAMTEMQG 229
Query: 280 VV 281
V+
Sbjct: 230 VL 231
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 34/183 (18%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L ++ L EVF +V A++V DR T RS+G+GFV E A+
Sbjct: 167 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRNTGRSKGYGFVRFADESEQMRAMTE 226
Query: 174 FDG---------------SQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
G +G +T K ++ + P+GG + P I
Sbjct: 227 MQGVLCSTRPMRIGPASNKNLGTQTSKASY-QNPQGGAQNENDPNNT-----------TI 274
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ GNL +T + L+ F L+ K+ + GFV F + AL +N
Sbjct: 275 FVGNLDPNVTDEHLKQVFTQYGELVHVKIP------SGKRCGFVQFADRSSAEEALRVLN 328
Query: 279 GVV 281
G +
Sbjct: 329 GTL 331
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 102 EEPKVAASDEA----ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ P+ A +E ++VGNL ++T L +VF + G E+V+ ++ R G
Sbjct: 257 QNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYG-----ELVHVKIPSGKR-CG 310
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192
FV A+EA+R+ +G+ +GG+ V++++ P
Sbjct: 311 FVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSP 345
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++ + L E+F++ G V S + D +T RS G+ +V + ++A A+ L
Sbjct: 26 LYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRALELL 85
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G+ +++ F + P ++ S I+ NL + ++ L D
Sbjct: 86 NFNAVNGKPIRIMF---------SHRDPSIRKS------GTANIFIKNLDKSIDNKALHD 130
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+S+G+GFV FE E Q+A++ +NG++
Sbjct: 131 TFAAFGTILSCKVATDP-SGQSKGYGFVQFEQEESAQTAIEKVNGML 176
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 13/167 (7%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +++ NL S+ + +L + FA GT+ S ++ D + +S+G+GFV E A+ AI
Sbjct: 112 ANIFIKNLDKSIDNKALHDTFAAFGTILSCKVATDP-SGQSKGYGFVQFEQEESAQTAIE 170
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + + V V P V R ER G V + +Y NL T L
Sbjct: 171 KVNGMLLNDKQVFVG-PFV-RRQER---------DQSGVVSKFNNVYVKNLADSTTDDEL 219
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F+ G +S+ V+ G+S+ FGFV FE A+D A++A+NG
Sbjct: 220 KKVFEAY-GPISSAVVMRDNEGKSKCFGFVNFEHADDAAKAVEALNG 265
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 17/173 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL S T L +VF G ++SA ++ D +S+ FGFV ++A +A+
Sbjct: 205 VYVKNLADSTTDDELKKVFEAYGPISSAVVMRDN-EGKSKCFGFVNFEHADDAAKAVEAL 263
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQN-------SYQGFVDSPHKIYAGNLGWG 226
+G + + V + + ER A + K + YQG +Y NL
Sbjct: 264 NGKKFDEKEWYVGRAQ--KKSEREAELRAKFEQERKERIEKYQGV-----NLYLKNLDDT 316
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + LR+ F ++S KV+ + G+SRG GFV F + ++ A+ MNG
Sbjct: 317 IDDEKLREIFSEYGTIVSCKVMRDP-QGQSRGSGFVAFSSPDEATRAVTEMNG 368
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+ + E E E A E+E + + LY+ NL ++ L E+F+E GT+ S +++
Sbjct: 279 QKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVM 338
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D +SRG GFV S +EA A+ +G +G + + V
Sbjct: 339 RDP-QGQSRGSGFVAFSSPDEATRAVTEMNGKMVGSKPLYV 378
>gi|15021899|dbj|BAB62225.1| Hu/elav class neuron-specific RNA binding protein [Branchiostoma
belcheri]
Length = 326
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
+ D L V LP +MT + +F+ G V S +++ D+VT +S G+GFV ++
Sbjct: 17 STKDSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQD 76
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A++AI +G ++ +T+KV++ + S Q D+ +Y L
Sbjct: 77 AEKAINTLNGLRLQAKTIKVSYA---------------RPSSQAIKDA--NLYVSGLPKT 119
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+T Q L F+ +++++++F+ TG+SRG GFV F+ + + A+ +NG +
Sbjct: 120 MTQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHI 174
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 31/198 (15%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L +F G + ++ I++D VT +SRG GFV EA+ AI
Sbjct: 109 ANLYVSGLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAIT 168
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGE-------------RAAMGPKLQNSYQ-------- 209
+G G T + V F P R +GP L + +
Sbjct: 169 ELNGHIPKGATDPITVKFANNPSQNHAKALQQAAYLAPARRYLGPMLHQTARFRYSPMGA 228
Query: 210 ---GFVDSPHK-----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGF 261
G + P+ I+ NL L F + + KVI + T + +GFGF
Sbjct: 229 DPMGVGNIPNGGTGFCIFVYNLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCKGFGF 288
Query: 262 VTFETAEDLQSALDAMNG 279
VT ++ A+ +NG
Sbjct: 289 VTMAHYDEAVVAIAQLNG 306
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM +EA AI
Sbjct: 245 IFVYNLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCKGFGFVTMAHYDEAVVAIAQL 304
Query: 175 DGSQIGGRTVKVNF 188
+G +GGR ++V+F
Sbjct: 305 NGYCLGGRVLQVSF 318
>gi|302792090|ref|XP_002977811.1| hypothetical protein SELMODRAFT_232989 [Selaginella moellendorffii]
gi|300154514|gb|EFJ21149.1| hypothetical protein SELMODRAFT_232989 [Selaginella moellendorffii]
Length = 455
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y M + L +FA G V SA+++ ++ T G+GF+ S A+
Sbjct: 25 EEVRTLWIGDLQYWMDENYLRNLFAHTGEVLSAKVIRNKQTGYPEGYGFIEFNSHPAAER 84
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ ++G+Q+ + ++N+ G +R GP+L I+ G+L +
Sbjct: 85 VLLAYNGTQMPQTEQAFRLNWASFGMGEKRMDGGPEL------------SIFVGDLAPDV 132
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L + F+ + P + AKV+ + TGRS+G+GFV F + A+ MNGV
Sbjct: 133 TDYMLHETFRTRFPSVRGAKVVIDAVTGRSKGYGFVRFADENERARAMSEMNGV 186
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D VT RS+G+GFV E A+
Sbjct: 123 IFVGDLAPDVTDYMLHETFRTRFPSVRGAKVVIDAVTGRSKGYGFVRFADENERARAMSE 182
Query: 174 FDGSQIGGRTVKVN 187
+G R ++++
Sbjct: 183 MNGVYCSSRPMRIS 196
>gi|218200393|gb|EEC82820.1| hypothetical protein OsI_27609 [Oryza sativa Indica Group]
Length = 164
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 71/136 (52%)
Query: 143 EIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGP 202
+I D T SRG GFVTM S+ EA+ A+ DG + GR + V R
Sbjct: 9 QISRDPETGLSRGCGFVTMRSLPEARTAMNALDGFDLDGREMLVKLSSDVVSKRRNINMT 68
Query: 203 KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFV 262
+SPHKIY GN+ W + Q LR+ F ++S +++ +R GR R +GF+
Sbjct: 69 HTPPVKDHIFESPHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFL 128
Query: 263 TFETAEDLQSALDAMN 278
+F +AE+L++AL N
Sbjct: 129 SFASAEELEAALKLDN 144
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGN+ +S+ L E F++ GTV S ++ DR R R +GF++ S EE + A++L
Sbjct: 83 KIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAALKL 142
Query: 174 FDGSQIGGRTVKV 186
D + GR + V
Sbjct: 143 -DNTHFHGRNILV 154
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+LP +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + + SRGFGFV FET E Q+A+ MNG++
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTMNGML 162
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +YV NL + L ++F++ G + S +++ D + SRGFGFV EE
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEE 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ GR + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL + + LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRGFGFV + E A+ AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E +G + F + IY NL + Q L+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-VELGARAME----FTN----IYVKNLHVDVDEQRLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ + +G SRGFGFV FE E+ Q A+ MNG
Sbjct: 210 LFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNMNG 253
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL S+ L + F+ G + SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G +G + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIVGTKPLYVALAQ--RKEERKAI---LTNQY 382
>gi|356532261|ref|XP_003534692.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 365
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 19/175 (10%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A ++ A YVGNL ++ L E+F +AG V + + DRVT++ +G+GFV S E+
Sbjct: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A AI++ + ++ G+ ++VN +A+ K +D ++ GNL
Sbjct: 79 ADYAIKVLNMIKLYGKPIRVN---------KASQDKK-------SLDVGANLFIGNLDPD 122
Query: 227 LTSQGLRDAFQGQPGLL--SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F G++ + K++ + TG SRGFGF+++++ E SA++AMNG
Sbjct: 123 VDEKLLYDTFSAF-GVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNG 176
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L++GNL + L + F+ G V + +I+ D T SRGFGF++ S E +
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 168
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI +G + R + V++
Sbjct: 169 SAIEAMNGQYLCNRQITVSY 188
>gi|348577751|ref|XP_003474647.1| PREDICTED: nucleolin-like isoform 2 [Cavia porcellus]
Length = 714
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ LY+ NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 486 SGESKTLYLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 541
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 542 EALNSCNKREIEGRTIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEETT 588
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F G G A+++ +R TG S+GFGFV F T ED ++A +AM
Sbjct: 589 EETLKESFDGSIG---ARIVTDRETGSSKGFGFVDFNTEEDAKAAKEAM 634
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 37/190 (19%)
Query: 102 EEPKVAAS--DEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
E+PK S D AR L NLPY +T L EVF +A EI +S+G +
Sbjct: 383 EKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA-----LEIRLVSKDGKSKGIAY 437
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-SYQGFVDS--- 214
+ + +A++ G++I GR+V + + G K QN Y+G +S
Sbjct: 438 IEFKTEADAEKTFEEKQGTEIDGRSVSLYY-----------TGEKGQNQDYRGGKNSTWS 486
Query: 215 --PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAE 268
+Y NL + T + L++ F+ K F + G+S+G+ F+ F + E
Sbjct: 487 GESKTLYLSNLSYSATEETLQEVFE--------KATFIKVPQNQNGKSKGYAFIEFASFE 538
Query: 269 DLQSALDAMN 278
D + AL++ N
Sbjct: 539 DAKEALNSCN 548
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G++ A IV DR T S+GFGFV + E+
Sbjct: 570 ARSQPSKTLFVKGLSEETTEETLKESFD--GSIG-ARIVTDRETGSSKGFGFVDFNTEED 626
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 627 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 653
>gi|348577749|ref|XP_003474646.1| PREDICTED: nucleolin-like isoform 1 [Cavia porcellus]
Length = 713
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ LY+ NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 485 SGESKTLYLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 540
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 541 EALNSCNKREIEGRTIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEETT 587
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F G G A+++ +R TG S+GFGFV F T ED ++A +AM
Sbjct: 588 EETLKESFDGSIG---ARIVTDRETGSSKGFGFVDFNTEEDAKAAKEAM 633
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 37/190 (19%)
Query: 102 EEPKVAAS--DEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
E+PK S D AR L NLPY +T L EVF +A EI +S+G +
Sbjct: 382 EKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA-----LEIRLVSKDGKSKGIAY 436
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-SYQGFVDS--- 214
+ + +A++ G++I GR+V + + G K QN Y+G +S
Sbjct: 437 IEFKTEADAEKTFEEKQGTEIDGRSVSLYY-----------TGEKGQNQDYRGGKNSTWS 485
Query: 215 --PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAE 268
+Y NL + T + L++ F+ K F + G+S+G+ F+ F + E
Sbjct: 486 GESKTLYLSNLSYSATEETLQEVFE--------KATFIKVPQNQNGKSKGYAFIEFASFE 537
Query: 269 DLQSALDAMN 278
D + AL++ N
Sbjct: 538 DAKEALNSCN 547
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G++ A IV DR T S+GFGFV + E+
Sbjct: 569 ARSQPSKTLFVKGLSEETTEETLKESFD--GSIG-ARIVTDRETGSSKGFGFVDFNTEED 625
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 626 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 652
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A++ +A LYVG L ++T + L E+F G VAS + D VT RS G+ +V + +
Sbjct: 36 ASTAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAAD 95
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ A+ + S I R ++ + + P L+ + QG ++ NL
Sbjct: 96 GERALEQLNYSLIKNRACRIMW---------SQRDPALRKTGQG------NVFIKNLDEA 140
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV + + GRS+G+GFV +ETAE +A+ ++NG++
Sbjct: 141 IDNKALHDTFVAFGNVLSCKVATDEH-GRSKGYGFVHYETAEAADNAIKSVNGML 194
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL +T E+F G V S+ + D +S+GFGFV EEA+ A+
Sbjct: 225 LYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDE-EGKSKGFGFVNYERHEEAQRAVDEL 283
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPHK-----IYAGNLGWGLT 228
+ + G+ + V R ++A +L+ SY Q ++ K +Y NL
Sbjct: 284 HDTDLKGKKLFVA-----RAQKKAEREDELRRSYEQAKLEKLSKYQGVNLYIKNLEDDFD 338
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
LR F+ + S KV+ + G S+GFGFV F + ++ A+ MN
Sbjct: 339 DDKLRAEFEPFGAITSCKVMRDE-KGTSKGFGFVCFSSPDEATKAVAEMN 387
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + F G V S ++ D RS+G+GFV + E A AI+
Sbjct: 132 VFIKNLDEAIDNKALHDTFVAFGNVLSCKVATDE-HGRSKGYGFVHYETAEAADNAIKSV 190
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + R ER + KL F + +Y NL +T + +
Sbjct: 191 NGMLLNDKKVYVGH-HISRK-ERQS---KLDEMKAQFTN----LYIKNLDTEVTQEEFTE 241
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F + G +++ ++ G+S+GFGFV +E E+ Q A+D ++
Sbjct: 242 LFT-RYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELH 284
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKVA--ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E E+E E+ K+ + + LY+ NL L F G + S +++
Sbjct: 299 QKKAEREDELRRSYEQAKLEKLSKYQGVNLYIKNLEDDFDDDKLRAEFEPFGAITSCKVM 358
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
D S+GFGFV S +EA +A+ + IG + + V+
Sbjct: 359 RDE-KGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 400
>gi|326531676|dbj|BAJ97842.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 413
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++VG + + T S ++ F + G + + I+ D+ T RGFGFVT +
Sbjct: 61 SGKIFVGGVAWETTEESFSKHFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKV- 119
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
L D I GRTV+V VPR + GPK + KI+ G L LT
Sbjct: 120 -LEDEHNIDGRTVEVK-RTVPREEMSSKDGPKTR-----------KIFVGGLPSTLTEDD 166
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
LRD F ++ +++ + TGRSRGFGFVTFE+ + ++ +
Sbjct: 167 LRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVI 209
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG LP ++T L + F+ G V +I+ D T RSRGFGFVT S + + I
Sbjct: 152 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 211
Query: 174 FDGSQIGGRTVKVNFPEVPRGG 195
+GG+ V++ E + G
Sbjct: 212 GRMRDLGGKQVEIKKAEPKKHG 233
>gi|326487243|dbj|BAJ89606.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506666|dbj|BAJ91374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 413
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++VG + + T S ++ F + G + + I+ D+ T RGFGFVT +
Sbjct: 61 SGKIFVGGVAWETTEESFSKHFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKV- 119
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
L D I GRTV+V VPR + GPK + KI+ G L LT
Sbjct: 120 -LEDEHNIDGRTVEVK-RTVPREEMSSKDGPKTR-----------KIFVGGLPSTLTEDD 166
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
LRD F ++ +++ + TGRSRGFGFVTFE+ + ++ +
Sbjct: 167 LRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVI 209
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG LP ++T L + F+ G V +I+ D T RSRGFGFVT S + + I
Sbjct: 152 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 211
Query: 174 FDGSQIGGRTVKVNFPEVPRGG 195
+GG+ V++ E + G
Sbjct: 212 GRMRDLGGKQVEIKKAEPKKHG 233
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A++ +A LYVG L ++T + L E+F G VAS + D VT RS G+ +V + +
Sbjct: 36 ASTAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAAD 95
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ A+ + S I R ++ + + P L+ + QG ++ NL
Sbjct: 96 GERALEQLNYSLIKNRACRIMW---------SQRDPALRKTGQG------NVFIKNLDEA 140
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV + + GRS+G+GFV +ETAE +A+ ++NG++
Sbjct: 141 IDNKALHDTFVAFGNVLSCKVATDEH-GRSKGYGFVHYETAEAADNAIKSVNGML 194
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL +T E+F G V S+ + D +S+GFGFV EEA+ A+
Sbjct: 225 LYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDE-EGKSKGFGFVNYERHEEAQRAVDEL 283
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPHK-----IYAGNLGWGLT 228
+ + G+ + V R ++A +L+ SY Q ++ K +Y NL
Sbjct: 284 HDTDLKGKKLFVA-----RAQKKAEREDELRRSYEQAKLEKLSKYQGINLYIKNLEDDFD 338
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
LR F+ + S KV+ + G S+GFGFV F + ++ A+ MN
Sbjct: 339 DDKLRAEFEPFGAITSCKVMRDE-KGTSKGFGFVCFSSPDEATKAVAEMN 387
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + F G V S ++ D RS+G+GFV + E A AI+
Sbjct: 132 VFIKNLDEAIDNKALHDTFVAFGNVLSCKVATDE-HGRSKGYGFVHYETAEAADNAIKSV 190
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + R ER + KL F + +Y NL +T + +
Sbjct: 191 NGMLLNDKKVYVGH-HISRK-ERQS---KLDEMKAQFTN----LYIKNLDTEVTQEEFTE 241
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F + G +++ ++ G+S+GFGFV +E E+ Q A+D ++
Sbjct: 242 LFT-RYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELH 284
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKVA--ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E E+E E+ K+ + + LY+ NL L F G + S +++
Sbjct: 299 QKKAEREDELRRSYEQAKLEKLSKYQGINLYIKNLEDDFDDDKLRAEFEPFGAITSCKVM 358
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
D S+GFGFV S +EA +A+ + IG + + V+
Sbjct: 359 RDE-KGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 400
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L S+ S L ++F + G V S + D T RS G+G+V + EA A+
Sbjct: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G+ +++ + + P ++ S G I+ NL + ++ L D
Sbjct: 102 NFTPLNGKPIRIMY---------SYRDPTIRKSGAG------NIFIKNLDKSIDNKALHD 146
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + G+SRG+GFV F+ E +SA+D +NG++
Sbjct: 147 TFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNGML 192
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL S+ + +L + F+ G + S ++ D + +SRG+GFV + E AK AI
Sbjct: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAI 185
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + + V V R ER + K + + +Y NL T
Sbjct: 186 DKLNGMLLNDKQVFVG--PFLRKQERESTADKTRF---------NNVYVKNLSETTTEDD 234
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L+ F G+ G++++ + G+S+ FGFV F+ +D +++A+NG
Sbjct: 235 LKKIF-GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 5/184 (2%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ ++E A +YV NL + T L ++F E G + S ++ D +S+ FG
Sbjct: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFG 262
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH- 216
FV ++A ++ +G + + V + E G K + S + D
Sbjct: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG-KFEQSLKETADKFEG 321
Query: 217 -KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+Y NL ++ L++ F + S KV+ + G SRG GFV F TAE+ AL
Sbjct: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALT 380
Query: 276 AMNG 279
MNG
Sbjct: 381 EMNG 384
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+ + E E E + E+ + A E LYV NL S++ L E+F+E GT+ S +++
Sbjct: 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D SRG GFV + EEA +A+ +G + + + V
Sbjct: 355 RD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S I D++T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
AK A+ + I GR V++ + + ++ +G + N I+ NL
Sbjct: 65 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGGGVGN-----------IFIKNLDKS 113
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 114 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 166
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 105 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 162
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 163 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 213
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 214 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 257
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+
Sbjct: 189 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 247
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 248 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 302
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 303 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 360
Query: 281 V 281
+
Sbjct: 361 I 361
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 296 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 353
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 354 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 386
>gi|366990603|ref|XP_003675069.1| hypothetical protein NCAS_0B06140 [Naumovozyma castellii CBS 4309]
gi|342300933|emb|CCC68698.1| hypothetical protein NCAS_0B06140 [Naumovozyma castellii CBS 4309]
Length = 443
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 21/209 (10%)
Query: 78 TEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAAR------LYVGNLPYSMTSSSLAE 131
TE +P +E E+ A +E A++ + R LYVGNL S+ L +
Sbjct: 42 TEPESADPVSEAPAAGEQSAENQESSVVPASATQGGRETSDRVLYVGNLDKSINEDLLKQ 101
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191
F G + +I+ D+ + + + F+ +A A++ +G QI G+TV++N+
Sbjct: 102 YFQVGGQITDVKIMVDK-KNNNVNYAFIEYLKSHDANVALQTLNGIQIEGKTVRINW--- 157
Query: 192 PRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER 251
A + NS D ++ G+L + + L AF P + A V+++
Sbjct: 158 ------AFQSQQTTNS-----DDTFNLFVGDLNVDVDDETLSHAFDQFPSYVQAHVMWDM 206
Query: 252 YTGRSRGFGFVTFETAEDLQSALDAMNGV 280
TGRSRG+GFV+F E Q A++ M G+
Sbjct: 207 QTGRSRGYGFVSFADQEQAQEAMNVMQGM 235
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SD+ L+VG+L + +L+ F + + A +++D T RSRG+GFV+ E+A+
Sbjct: 167 SDDTFNLFVGDLNVDVDDETLSHAFDQFPSYVQAHVMWDMQTGRSRGYGFVSFADQEQAQ 226
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
EA+ + G I GR V++N+
Sbjct: 227 EAMNVMQGMPINGRAVRINW 246
>gi|356541995|ref|XP_003539457.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Glycine max]
Length = 401
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 21/176 (11%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A +E L++G+L Y + S L++ FA +G V S +I+ +++T + G+GFV S A
Sbjct: 5 AIEEVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASA 64
Query: 168 KEAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ +R F+G+Q+ G +T ++N+ G H I+ G+L
Sbjct: 65 EAFLRTFNGAQMPGTDQTFRLNWASFGDSGPD------------------HSIFVGDLAP 106
Query: 226 GLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T L++ F+ P + +KV+ + TGRS+G+GFV F A+ MNGV
Sbjct: 107 DVTDFILQETFRAHYPSVKGSKVVTDPATGRSKGYGFVKFADEAQRNRAMTEMNGV 162
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 42/192 (21%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V +++V D T RS+G+GFV + A+
Sbjct: 99 IFVGDLAPDVTDFILQETFRAHYPSVKGSKVVTDPATGRSKGYGFVKFADEAQRNRAMTE 158
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY-------------- 219
+G R +++ +A PK S+Q P +Y
Sbjct: 159 MNGVYCSTRPMRI-----------SAATPKKNASFQHQYAPPKAMYQFPAYTAPVSTVAP 207
Query: 220 ----------AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
GNL +T + L+ AF ++ K+ Y G +G+G+V F T
Sbjct: 208 ENDVNNTTVCIGNLDLNVTEEELKQAFVQFGDIVLVKI----YAG--KGYGYVQFGTRAS 261
Query: 270 LQSALDAMNGVV 281
+ A+ M G V
Sbjct: 262 AEDAIQRMQGKV 273
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 117 VGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
+GNL ++T L + F + G + +I +G+G+V G+ A++AI+ G
Sbjct: 218 IGNLDLNVTEEELKQAFVQFGDIVLVKIY------AGKGYGYVQFGTRASAEDAIQRMQG 271
Query: 177 SQIGGRTVKVNF-------PEVPRGGERAAMGPKLQNSYQGF 211
IG + +++++ +VP GG A M P ++Y G+
Sbjct: 272 KVIGQQVIQISWGSTLTARQDVP-GGWGAQMDPSQWSAYYGY 312
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG+L +T + L E+F G VAS + D +T +S G+ +V +V +A+ A+
Sbjct: 40 SASLYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSITRKSLGYAYVNYHNVNDARRAL 99
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
++I G+ V++ + + P L+ S G ++ N+ + ++
Sbjct: 100 EALKYNEICGKQVRIMW---------SHRDPSLRKSGAG------NVFIKNIDESIDTKA 144
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L DAF +LS KV + TGRSRG+GFV F+T + A+ NG+
Sbjct: 145 LYDAFSPYGQILSCKVATDE-TGRSRGYGFVHFDTEANATRAISDANGM 192
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 12/169 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ N+ S+ + +L + F+ G + S ++ D T RSRG+GFV + A AI
Sbjct: 128 AGNVFIKNIDESIDTKALYDAFSPYGQILSCKVATDE-TGRSRGYGFVHFDTEANATRAI 186
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G Q+G + + V P V R ER + KL++ G + +Y N +
Sbjct: 187 SDANGMQLGNKKIFV-APFV-RRSERVS-STKLED---GVDEKFTNLYVRNFPENWNEEI 240
Query: 232 LRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++ F P G +++ ++ GR F F+ + ++A++ MNG
Sbjct: 241 LKENF--SPFGEITSMMMKSDPLGRK--FAFINYAENSMAKAAIETMNG 285
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 73/186 (39%), Gaps = 30/186 (16%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N P + L E F+ G + S + D + R F F+ AK AI
Sbjct: 227 LYVRNFPENWNEEILKENFSPFGEITSMMMKSDPL---GRKFAFINYAENSMAKAAIETM 283
Query: 175 DGSQIGGRTVKVNFPE------------VPRGGERAAMGPKLQNSYQGFVDSPH------ 216
+G ++ + E V +RA L+ Y DS H
Sbjct: 284 NGKDFSIKSGDKSTIEGEDTDKSETKLLVCAHQDRARRHAMLKAKY----DSMHAENKSK 339
Query: 217 ----KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+Y NL + LR+ F+G + S KV+ + + G S GFGFV F + ED
Sbjct: 340 YQGVNLYIKNLDDSINDAELRELFEGFGLITSCKVMVDEH-GASLGFGFVCFVSPEDATH 398
Query: 273 ALDAMN 278
A+ M+
Sbjct: 399 AVSEMH 404
>gi|297735183|emb|CBI17545.3| unnamed protein product [Vitis vinifera]
Length = 238
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 94/174 (54%), Gaps = 17/174 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A ++ A YVGNL +T L E+F +AG V + + DRVT+ +G+GFV S E+
Sbjct: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A AI++ + ++ G+ ++VN +A+ K +D ++ GNL
Sbjct: 79 ADYAIKVLNMIKLYGKPIRVN---------KASQDKKS-------LDVGANLFVGNLDPD 122
Query: 227 LTSQGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +++ K++ + TG SRGFGFV++++ E +A++AMNG
Sbjct: 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNG 176
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L+VGNL + L + F+ G V + +I+ D T SRGFGFV+ S E +
Sbjct: 109 DVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASD 168
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI +G + R + V++
Sbjct: 169 AAIEAMNGQYLCNRQITVSY 188
>gi|260821286|ref|XP_002605964.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
gi|229291301|gb|EEN61974.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
Length = 330
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 17/172 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D L V LP +MT + +F+ G V S +++ D+VT +S G+GFV ++A++
Sbjct: 24 DSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQDAEK 83
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI +G ++ +T+KV++ + S Q D+ +Y L +T
Sbjct: 84 AINTLNGLRLQAKTIKVSYA---------------RPSSQAIKDA--NLYVSGLPKTMTQ 126
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
Q L F+ +++++++F+ TG+SRG GFV F+ + + A+ +NG +
Sbjct: 127 QDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHI 178
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 31/198 (15%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L +F G + ++ I++D VT +SRG GFV EA+ AI
Sbjct: 113 ANLYVSGLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAIT 172
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGE-------------RAAMGPKLQNSYQ-------- 209
+G G T + V F P R +GP L + +
Sbjct: 173 ELNGHIPKGATDPITVKFANNPSQNHAKALQQAAYLAPARRYLGPMLHQTARFRYSPMGA 232
Query: 210 ---GFVDSPHK-----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGF 261
G + P+ I+ NL L F + + KVI + T + +GFGF
Sbjct: 233 DPMGVGNIPNGGTGFCIFVYNLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCKGFGF 292
Query: 262 VTFETAEDLQSALDAMNG 279
VT ++ A+ +NG
Sbjct: 293 VTMAHYDEAVVAIAQLNG 310
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM +EA AI
Sbjct: 249 IFVYNLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCKGFGFVTMAHYDEAVVAIAQL 308
Query: 175 DGSQIGGRTVKVNF 188
+G +GGR ++V+F
Sbjct: 309 NGYCLGGRVLQVSF 322
>gi|323307358|gb|EGA60637.1| Hrp1p [Saccharomyces cerevisiae FostersO]
Length = 534
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
+ SV+E + + DG I + +PR + D
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKVIDPKRA------IPRDEQ----------------DKTG 243
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
KI+ G +G + + + F ++ A+++ ++ TG+SRGFGFVT+++A+
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 295
>gi|195133204|ref|XP_002011029.1| GI16317 [Drosophila mojavensis]
gi|193907004|gb|EDW05871.1| GI16317 [Drosophila mojavensis]
Length = 340
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +Y G L ++ + L E+F +AG V + + DRVT +G+GFV S E
Sbjct: 6 IAERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ ++VN +++Q +D I+ GNL
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN----------------KASAHQKNLDVGANIFIGNLDV 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG+S+GF F+ F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKGFAFINFASFEASDAAMDAMNG 164
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A +++GNL + L + F+ G + + +I+ D T +S+GF F+ S E +
Sbjct: 97 DVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKGFAFINFASFEASD 156
Query: 169 EAIRLFDGSQIGGRTVKVN--FPEVPRGGERAAMGPKL---QNSYQGFVDSPHKIYA 220
A+ +G + R + V+ F + +G + +L QN D PH+++A
Sbjct: 157 AAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNP-SAHADRPHQLFA 212
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F G S ++ D T +S+GFGFV+ E+
Sbjct: 185 ARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDD-TGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERA--------AMGPKLQNSYQGFVDSPHKI 218
A++A+ +G ++ GR V V + GER M YQG +
Sbjct: 244 AQKAVDDMNGKELNGRQVYVG--RAQKKGERQNELKRKFEQMKQDRMTRYQGV-----NL 296
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL GL + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MN
Sbjct: 297 YVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 279 GVV 281
G +
Sbjct: 355 GRI 357
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I GR +++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGRPLRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGML 162
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAREFTN----VYIKNFGEDMDDEKLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS +V+ + TG+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGNYGPALSVRVMTDD-TGKSKGFGFVSFERHEDAQKAVDDMNG 253
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|323331635|gb|EGA73049.1| Hrp1p [Saccharomyces cerevisiae AWRI796]
Length = 521
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 133 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 192
Query: 160 TM---GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
+ SV+E + + DG I + +PR + D
Sbjct: 193 SFEKPSSVDEVVKTQHILDGKVIDPKRA------IPRDEQ----------------DKTG 230
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
KI+ G +G + + + F ++ A+++ ++ TG+SRGFGFVT+++A+
Sbjct: 231 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 282
>gi|326507732|dbj|BAJ86609.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 100
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D A +LYVGNL + + +S+L +F+E G V A+++YDR + RSRGFGFVT GS +E
Sbjct: 11 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 70
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
AI DG + GR ++V E
Sbjct: 71 AISNLDGVDLDGRQIRVTVAE 91
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 50/68 (73%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
DS +K+Y GNL WG+ + L + F Q +L AKVI++R +GRSRGFGFVT+ +A+++ +
Sbjct: 11 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 70
Query: 273 ALDAMNGV 280
A+ ++GV
Sbjct: 71 AISNLDGV 78
>gi|6324449|ref|NP_014518.1| Hrp1p [Saccharomyces cerevisiae S288c]
gi|2500574|sp|Q99383.1|HRP1_YEAST RecName: Full=Nuclear polyadenylated RNA-binding protein 4;
AltName: Full=Cleavage factor IB; Short=CFIB
gi|1016290|gb|AAA79097.1| nuclear polyadenylated RNA-binding protein [Saccharomyces
cerevisiae]
gi|1420003|emb|CAA99142.1| HRP1 [Saccharomyces cerevisiae]
gi|1550721|emb|CAA64546.1| RNA binding protein [Saccharomyces cerevisiae]
gi|1657691|gb|AAB18142.1| Hrp1p [Saccharomyces cerevisiae]
gi|285814768|tpg|DAA10661.1| TPA: Hrp1p [Saccharomyces cerevisiae S288c]
gi|349581049|dbj|GAA26207.1| K7_Hrp1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296592|gb|EIW07694.1| Hrp1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 534
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
+ SV+E + + DG I + +PR + D
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKVIDPKRA------IPRDEQ----------------DKTG 243
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
KI+ G +G + + + F ++ A+++ ++ TG+SRGFGFVT+++A+
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 295
>gi|403213707|emb|CCK68209.1| hypothetical protein KNAG_0A05440 [Kazachstania naganishii CBS
8797]
Length = 442
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 27/214 (12%)
Query: 78 TEDSQDEPETEQEEEEEEEAVEEEEE----PKV--AASDEAAR------LYVGNLPYSMT 125
T S EP +Q E + EE EE P V A + R LYVGNL S+T
Sbjct: 32 TAPSSIEPSQKQAASEADVVPEENEEANKEPPVVPANATHGGRETSDRVLYVGNLDKSIT 91
Query: 126 SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185
L + F AG + +++ D+ ++ + FV +A A++ +G QI VK
Sbjct: 92 EDILKQYFQVAGQIVDVKVMIDKKSNYV-NYAFVEYAKAHDASVALQTLNGIQIENNKVK 150
Query: 186 VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSA 245
+N RA Q+ DS ++ G+L + L +F+ P + A
Sbjct: 151 IN---------RA-----FQSQQSTTDDSTFNLFVGDLNIDIDDDTLSRSFKDFPSYIQA 196
Query: 246 KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
V+++ TGRSRG+GFV+F E Q A++ M G
Sbjct: 197 HVMWDMQTGRSRGYGFVSFADQEQAQKAMEEMQG 230
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D L+VG+L + +L+ F + + A +++D T RSRG+GFV+ E+A++
Sbjct: 164 DSTFNLFVGDLNIDIDDDTLSRSFKDFPSYIQAHVMWDMQTGRSRGYGFVSFADQEQAQK 223
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A+ G ++ GR +++N+
Sbjct: 224 AMEEMQGKELNGRPIRINW 242
>gi|365763141|gb|EHN04671.1| Hrp1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 534
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
+ SV+E + + DG I + +PR + D
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKVIDPKRA------IPRDEQ----------------DKTG 243
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
KI+ G +G + + + F ++ A+++ ++ TG+SRGFGFVT+++A+
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 295
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 16/165 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL S+T L ++F++A V S I D+VT RS G+ +V S E+AK A+ F
Sbjct: 33 VYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAKVALEYF 92
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G++++V F + P L+ S ++ NL + ++ L
Sbjct: 93 NFTVVNGKSIRVMF---------SNRDPTLRRS------GAANLFIKNLEPNIVAKSLHQ 137
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV + G+S+G+GFV F + E + A++A+NG
Sbjct: 138 MFSRFGIILSCKVATD-LNGKSKGYGFVQFVSEESAKDAMNALNG 181
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 79/184 (42%), Gaps = 7/184 (3%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ EE + + + +Y NLP T L VFA GT+ SA ++ D S+ FG
Sbjct: 197 IRREERQHIGGASKFTNVYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDG-DGESKCFG 255
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH 216
FV E A+EA+ +G I + V R ER A + K +
Sbjct: 256 FVNYEKTEYAEEAVEKLNGKIISDVALYVG--RAKRKQERQAELKEKFDKERNDKIRKSK 313
Query: 217 --KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+Y NL + + LR+ F + + KV+ + GRS+GFGFV F T E A+
Sbjct: 314 GCNLYLKNLDCSIDDEYLRNLFGRFDDIGTCKVMVDS-EGRSKGFGFVLFTTIEAANKAV 372
Query: 275 DAMN 278
N
Sbjct: 373 SXRN 376
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
AA L++ NL ++ + SL ++F+ G + S ++ D + +S+G+GFV S E AK+A+
Sbjct: 118 AANLFIKNLEPNIVAKSLHQMFSRFGIILSCKVATD-LNGKSKGYGFVQFVSEESAKDAM 176
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMG--PKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
+G G ++ R ER +G K N +Y NL T
Sbjct: 177 NALNGKLANGNGKQLYVDLFIRREERQHIGGASKFTN-----------VYTKNLPKEFTD 225
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L F G +++ V+ + G S+ FGFV +E E + A++ +NG +
Sbjct: 226 DDLCRVF-APFGTITSAVVMKDGDGESKCFGFVNYEKTEYAEEAVEKLNGKI 276
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y GNL +T Q L D F ++S ++ ++ TGRS G+ +V F + ED + AL+
Sbjct: 33 VYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAKVALEYF 92
Query: 278 NGVV 281
N V
Sbjct: 93 NFTV 96
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
++ + E +E ++E K+ S + LY+ NL S+ L +F + + +++ D
Sbjct: 291 QERQAELKEKFDKERNDKIRKS-KGCNLYLKNLDCSIDDEYLRNLFGRFDDIGTCKVMVD 349
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAI 171
RS+GFGFV ++E A +A+
Sbjct: 350 S-EGRSKGFGFVLFTTIEAANKAV 372
>gi|452848411|gb|EME50343.1| hypothetical protein DOTSEDRAFT_69017 [Dothistroma septosporum
NZE10]
Length = 516
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 100/193 (51%), Gaps = 9/193 (4%)
Query: 96 EAVEEEEEPKVAASDEAA--RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
EA EE K D AA L+VGNL +++ L F E G + + ++ DR + RS
Sbjct: 234 EAEPEETSKKTKTEDPAATGNLFVGNLSWNVDEEWLTREFEEFGAIKAVRVITDRDSGRS 293
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS--YQGF 211
+G+G+V S ++A +A+ G + R ++V+ PR P+ +++ + +
Sbjct: 294 KGYGYVEFESADDAAKALEARHGYTLDNRELRVDL-GTPRAQRNDGQTPQQRSNDRQKQY 352
Query: 212 VDSPHK----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267
D+P + ++ GN+ + T + + FQ + + ++ +R TG +GFG+V F +
Sbjct: 353 GDTPSQPSATLFVGNISFDATQDMVTEVFQEYGSINAVRLPTDRETGAPKGFGYVEFSSI 412
Query: 268 EDLQSALDAMNGV 280
E+ +SA++ + GV
Sbjct: 413 EEAKSAMENLTGV 425
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S +A L+VGN+ + T + EVF E G++ + + DR T +GFG+V S+EEAK
Sbjct: 357 SQPSATLFVGNISFDATQDMVTEVFQEYGSINAVRLPTDRETGAPKGFGYVEFSSIEEAK 416
Query: 169 EAIRLFDGSQIGGRTVKVNF--PEVPR 193
A+ G I GR +++++ P+ PR
Sbjct: 417 SAMENLTGVDIAGRPIRLDYSTPKPPR 443
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 18/177 (10%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
P VAA+ A LYVG+L ++ S L + F+E ++AS + D T +S +G++
Sbjct: 4 HPSVAAA--PASLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFV 61
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGN 222
S ++A AI L + S + G+ ++V + ++A+G ++ N
Sbjct: 62 SPQDAIRAIELKNNSTLNGKAMRVMWSRRDPDARKSAIG---------------NLFVKN 106
Query: 223 LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + + GL+D F+ +LS+KV+ G+S+G+GFV FE+ E + A++ +NG
Sbjct: 107 LPESIDNAGLQDIFKKYGNILSSKVVTSE-DGKSKGYGFVQFESEESSKVAIEKLNG 162
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 13/173 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ ++L E F+ G + S I D S+GFGFV + ++AK+A+
Sbjct: 193 LYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDN-NGMSKGFGFVNYDNPDDAKKAMEAM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY------QGFVDSPHKIYAGNLGWGLT 228
+GSQ+G + + V R ++A L + + Q IY N+ ++
Sbjct: 252 NGSQLGSKIL-----YVARAQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVS 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ LRD F + SAK++ + G S+GFGFV F T E+ A++ +G +
Sbjct: 307 DEELRDHFSACGTITSAKIMRDD-KGISKGFGFVCFSTPEEANKAVNTFHGFM 358
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V NLP S+ ++ L ++F + G + S+++V +S+G+GFV S E +K AI
Sbjct: 102 LFVKNLPESIDNAGLQDIFKKYGNILSSKVVTSE-DGKSKGYGFVQFESEESSKVAIEKL 160
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + + V + + +R GP + + +Y NL ++ L++
Sbjct: 161 NGYTVADKELYVG--KFVKKSDRILPGPDARYT---------NLYMKNLDLDVSEATLQE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F G + + VI + G S+GFGFV ++ +D + A++AMNG
Sbjct: 210 KFSSF-GKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNG 253
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E EQ + E ++E+ K S+ +YV N+ ++ L + F+ GT+
Sbjct: 266 AQKKAEREQILHHQFEEKQKEQILKYKGSN----IYVKNIDDHVSDEELRDHFSACGTIT 321
Query: 141 SAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
SA+I+ D D+ S+GFGFV + EEA +A+ F G G+ + V
Sbjct: 322 SAKIMRD---DKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYV 366
>gi|259149364|emb|CAY86168.1| Hrp1p [Saccharomyces cerevisiae EC1118]
Length = 534
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
+ SV+E + + DG I + +PR + D
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKVIDPKRA------IPRDEQ----------------DKTG 243
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
KI+ G +G + + + F ++ A+++ ++ TG+SRGFGFVT+++A+
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 295
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 20/191 (10%)
Query: 95 EEAVEEEEEPKVAASDEA----ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
E A + E P AA A A LYVG L S+T + L E+F+ G VAS + D VT
Sbjct: 32 EGAADGNETPNSAAPTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVT 91
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQG 210
RS G+ +V + + + A+ + + I G+ ++ + + P L+ + QG
Sbjct: 92 RRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQ---------RDPALRKTGQG 142
Query: 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
++ NL + ++ L D F +LS KV + + G S+G+GFV +ETAE
Sbjct: 143 ------NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAA 195
Query: 271 QSALDAMNGVV 281
+A+ +NG++
Sbjct: 196 TNAIKHVNGML 206
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAATNAIKHV 202
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + +Y NL +T++ R+
Sbjct: 203 NGMLLNEKKVFV--------GHHIAKKDR-QSKFEEMKANFTNVYVKNLEPEVTNEEFRE 253
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + TG+SRGFGFV F + +A++ +N
Sbjct: 254 LFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLN 297
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL +T+ E+F + G + SA + D T +SRGFGFV + + A A+
Sbjct: 237 VYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDL 296
Query: 175 DGSQIGGRTVKVNFP-------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ + G+ + V E R AA K + YQG +Y NL +
Sbjct: 297 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKA-SKYQGV-----NLYVKNLTDDI 350
Query: 228 TSQGLRDAFQGQPGLLSAKVI 248
+ LRD F G + SA+V+
Sbjct: 351 DDEKLRDLFIGFGNITSARVM 371
>gi|323303112|gb|EGA56914.1| Hrp1p [Saccharomyces cerevisiae FostersB]
Length = 550
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
+ SV+E + + DG I + +PR + D
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKVIDPKRA------IPRDEQ----------------DKTG 243
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
KI+ G +G + + + F ++ A+++ ++ TG+SRGFGFVT+++A+
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 295
>gi|326477036|gb|EGE01046.1| RNA recognition motif-containing protein [Trichophyton equinum CBS
127.97]
Length = 300
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVGN+ + +T++ L E ++ G V I+YD SRGFG+V SVEEAK+AI
Sbjct: 89 ATVYVGNILFDITAADLKEYASKYGKVLGTRIIYD-SRGLSRGFGYVRFESVEEAKKAID 147
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
S+ GR + VNF +V E+ Q ++ I+ GN+ +T + L
Sbjct: 148 EMHLSEYEGRKLSVNFAQVDLRDEQP----------QRKMEPTRTIFVGNIAHQVTDRDL 197
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F P + +V +R TG RGF F E + + + G
Sbjct: 198 HALFDDIPNVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEMLKG 244
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGN+ + +T L +F + V + DR T RGF VE A +
Sbjct: 183 IFVGNIAHQVTDRDLHALFDDIPNVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEML 242
Query: 175 DGSQIGGRTVKVNF 188
G GR +++++
Sbjct: 243 KGQAPYGRPLRLDY 256
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
Query: 99 EEEEEPKVAA-SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+E E +V A + E +Y+ N M L E+F+ G S +++ D RS+GFG
Sbjct: 176 RKEREAEVGARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDN-NGRSKGFG 234
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQ 209
FV EEA++A+ +G +I GR + V E+ R E+ M + N YQ
Sbjct: 235 FVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQKRLERQSELKRKFEQ--MKQERVNRYQ 292
Query: 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
G +Y NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+
Sbjct: 293 GV-----NLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE--GGRSKGFGFVCFSSPEE 345
Query: 270 LQSALDAMNGVV 281
A+ MNG +
Sbjct: 346 ATKAVTEMNGRI 357
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + SRG+GFV FET E A++ MNG++
Sbjct: 116 YDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHEAATRAIETMNGML 162
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + SRG+GFV + E A AI
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHEAATRAIETM 158
Query: 175 DGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + R V V R E A + N +Y N G + L
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEVGARAIEFTN-----------VYIKNFGDDMDDDRL 207
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
R+ F LS KV+ + GRS+GFGFV FE E+ Q A+ MNG
Sbjct: 208 REIFSRFGKTLSVKVMMDN-NGRSKGFGFVNFEKHEEAQKAVADMNG 253
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIVSTKPLYVALAQ--RKEERKAI---LTNQY 382
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 16/174 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A+ +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V S +
Sbjct: 48 ANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDG 107
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ A+ + + I G+ ++ + + P L+ + G I+ NL +
Sbjct: 108 ERALEELNYTLIKGKPCRIMW---------SQRDPALRKTGHG------NIFIKNLDAAI 152
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
++ L D F +LS KV + +G SRG+GFV +ETAE +A+ ++NG++
Sbjct: 153 DNKALHDTFAAFGNILSCKVAQDE-SGGSRGYGFVHYETAEAANAAIKSVNGML 205
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + SRG+GFV + E A AI+
Sbjct: 143 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-SGGSRGYGFVHYETAEAANAAIKSV 201
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ + K + F + IY N+ T R+
Sbjct: 202 NGMLLNEKKVFVGH-HIPKKDRMS----KFEEMKANFTN----IYVKNIDTETTDDEFRE 252
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F+ + SA + ++ G+ RGFGFV + ED A+D +N +
Sbjct: 253 LFEKYGEITSASLARDQ-EGKVRGFGFVNYIRHEDANKAVDELNDI 297
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++ + L ++F + G V S + D +T RS G+ +V +V++A A+ L
Sbjct: 6 LYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRALELL 65
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G+ V++ F + P ++ S I+ NL + ++ L D
Sbjct: 66 NFTPVNGKAVRIMF---------SHRDPSIRKS------GTANIFIKNLDRAIDNKALHD 110
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + G+S+G+GFV FE E Q A+D +NG++
Sbjct: 111 TFVSFGNILSCKVATDS-NGQSKGYGFVQFEQEESAQVAIDKVNGML 156
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +++ NL ++ + +L + F G + S ++ D +S+G+GFV E A+ AI
Sbjct: 92 ANIFIKNLDRAIDNKALHDTFVSFGNILSCKVATDS-NGQSKGYGFVQFEQEESAQVAID 150
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + + V V P V R ER G K N ++ NLG T L
Sbjct: 151 KVNGMLVAEKQVFVG-PFV-RRQEREQNG-KFNN-----------VFVKNLGESTTDDEL 196
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ F G G +++ V+ G+S+ FGFV FE ++ A+ +NG
Sbjct: 197 KEVF-GAFGKITSAVVMRDSDGKSKCFGFVNFENPDEAAKAVVGLNG 242
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 7/168 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S T L EVF G + SA ++ D +S+ FGFV + +EA +A+
Sbjct: 182 VFVKNLGESTTDDELKEVFGAFGKITSAVVMRDS-DGKSKCFGFVNFENPDEAAKAVVGL 240
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQG 231
+G +I + V + + ER A + K + + +D +Y NL + +
Sbjct: 241 NGKKIEDKEWYVGRAQ--KKSEREAELRAKYEQERKERIDRYQGANLYLKNLDDDVDDER 298
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR+ F + S KV+ + G+S+G GFV + E+ A MNG
Sbjct: 299 LREIFADFGSITSCKVMRD-AQGQSKGSGFVAYSAPEEANRATIEMNG 345
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+ + E E E A E+E + + A LY+ NL + L E+FA+ G++ S +++
Sbjct: 256 QKKSEREAELRAKYEQERKERIDRYQGANLYLKNLDDDVDDERLREIFADFGSITSCKVM 315
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ 205
D +S+G GFV + EEA A +G IG + + V + R ER A KLQ
Sbjct: 316 RD-AQGQSKGSGFVAYSAPEEANRATIEMNGKMIGSKPIYVAMAQ--RKEERRA---KLQ 369
Query: 206 NSY 208
+
Sbjct: 370 AQF 372
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A+ L+V NLP S + +L E F + G V S +++ D T S+ GF++ ++A
Sbjct: 177 AAKHFTNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQA 236
Query: 168 KEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAG 221
+ A+ + +I G+ + + R E A K++ YQG +Y
Sbjct: 237 EAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGV-----NLYVK 291
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
NL + +GLR+AF+ + SAKVI + GRS+GFGFV F + E+ A+ MNG +
Sbjct: 292 NLDDSIDDEGLREAFKQFGNITSAKVITD-LNGRSKGFGFVCFSSPEEATKAVTEMNGRI 350
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L + F +G V S + D VT RS G+ +V +A+ A+
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S QG ++ NL + ++ L
Sbjct: 62 TMNFDVIKGKPIRIMW---------SQRDPSLRRSGQG------NVFIKNLDRSIDNKAL 106
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + S+GFGFV +E+ E Q A++ +NG++
Sbjct: 107 YDTFSSFGNILSCKVVCD--INGSKGFGFVHYESDESAQRAIEKVNGML 153
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E E + + E +++E + + LYV NL S+ L E F + G +
Sbjct: 258 AQKKAERSSELKAKYEKIKQERIQRY----QGVNLYVKNLDDSIDDEGLREAFKQFGNIT 313
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
SA+++ D + RS+GFGFV S EEA +A+ +G GG+ + V + R +R A
Sbjct: 314 SAKVITD-LNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQ--RKEDRKA- 369
Query: 201 GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR------DAFQGQP 240
LQ Y V + ++ A +G + +Q + QGQP
Sbjct: 370 --HLQQQYMQRVSTGIRMQAF-MGNQVVNQNFQPPRYILPTMQGQP 412
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+GFGFV S E A+ AI
Sbjct: 92 VFIKNLDRSIDNKALYDTFSSFGNILSCKVVCD--INGSKGFGFVHYESDESAQRAIEKV 149
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V R R + ++ + F + ++ NL + L +
Sbjct: 150 NGMLMEDKKV-----FVARFKSRNDRMREFGDAAKHFTN----LFVKNLPDSWDTDALLE 200
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ ++S KVI + TG S+ GF++F+ + ++A++ M+
Sbjct: 201 NFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMH 244
>gi|118474079|ref|YP_892397.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|424821065|ref|ZP_18246103.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
gi|118413305|gb|ABK81725.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|342327844|gb|EGU24328.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
Length = 82
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 53/73 (72%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y MT S L EVF+ G V A+IV D+ T+RS+GFGFV M S E+AK+AI
Sbjct: 4 IYVGNLSYRMTESELREVFSSFGEVTRAKIVKDKETNRSKGFGFVEMSSDEQAKKAIEGT 63
Query: 175 DGSQIGGRTVKVN 187
+G ++GGR ++VN
Sbjct: 64 NGKEVGGRALRVN 76
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
IY GNL + +T LR+ F + AK++ ++ T RS+GFGFV + E + A++
Sbjct: 4 IYVGNLSYRMTESELREVFSSFGEVTRAKIVKDKETNRSKGFGFVEMSSDEQAKKAIEGT 63
Query: 278 NG 279
NG
Sbjct: 64 NG 65
>gi|326472099|gb|EGD96108.1| RNA binding domain-containing protein [Trichophyton tonsurans CBS
112818]
Length = 293
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVGN+ + +T++ L E ++ G V I+YD SRGFG+V SVEEAK+AI
Sbjct: 82 ATVYVGNILFDITAADLKEYASKYGKVLGTRIIYD-SRGLSRGFGYVRFESVEEAKKAID 140
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
S+ GR + VNF +V E+ Q ++ I+ GN+ +T + L
Sbjct: 141 EMHLSEYEGRKLSVNFAQVDLRDEQP----------QRKMEPTRTIFVGNIAHQVTDRDL 190
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F P + +V +R TG RGF F E + + + G
Sbjct: 191 HALFDDIPNVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEMLKG 237
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGN+ + +T L +F + V + DR T RGF VE A +
Sbjct: 176 IFVGNIAHQVTDRDLHALFDDIPNVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEML 235
Query: 175 DGSQIGGRTVKVNF 188
G GR +++++
Sbjct: 236 KGQAPYGRPLRLDY 249
>gi|401623736|gb|EJS41824.1| hrp1p [Saccharomyces arboricola H-6]
Length = 540
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 148 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 207
Query: 160 TM---GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
+ SV+E + + DG I + +PR + D
Sbjct: 208 SFEKPSSVDEVVKTQHILDGKVIDPKRA------IPRDEQ----------------DKTG 245
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
KI+ G +G + + + F ++ A+++ ++ TG+SRGFGFVT+++A+
Sbjct: 246 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 297
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I GR V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGRPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A+D MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGML 162
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGDDMNDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 MFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G + G+++ V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|50289655|ref|XP_447259.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526568|emb|CAG60192.1| unnamed protein product [Candida glabrata]
Length = 416
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 27/216 (12%)
Query: 75 FQVTEDSQDEPETEQEEEEEEEAVEE--EEEPKV--AASDEAAR------LYVGNLPYSM 124
+ E+ ++PE +E E + A +E +++P V A++ + R LYVGNL S+
Sbjct: 10 IETPEEVIEKPEEVSQEVEGDNASQENDDDKPSVVPASATKGGRETSDRVLYVGNLDKSI 69
Query: 125 TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184
T L + F G + + +I+ D + + + FV +A A++ +G Q+ +T+
Sbjct: 70 TEDLLKQYFQAGGPIQNVKIIED-MKNEYVNYAFVEYIRSHDANVALQTLNGVQLENKTL 128
Query: 185 KVNFP-EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL 243
K+N+ E + E D ++ G+L + + L F+ P +
Sbjct: 129 KINWAFETQQAAEN---------------DDTFNLFVGDLNVDVDDETLAGTFREFPTFI 173
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
A V+++ TGRSRG+GFV+F E+ Q A+DAM G
Sbjct: 174 QAHVMWDMQTGRSRGYGFVSFSNQEEAQKAMDAMQG 209
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E + A +D+ L+VG+L + +LA F E T A +++D T RSRG+GFV+
Sbjct: 135 ETQQAAENDDTFNLFVGDLNVDVDDETLAGTFREFPTFIQAHVMWDMQTGRSRGYGFVSF 194
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNF 188
+ EEA++A+ G + GR +++N+
Sbjct: 195 SNQEEAQKAMDAMQGKDLSGRQIRINW 221
>gi|302506947|ref|XP_003015430.1| nucleic acid-binding protein [Arthroderma benhamiae CBS 112371]
gi|291179002|gb|EFE34790.1| nucleic acid-binding protein [Arthroderma benhamiae CBS 112371]
Length = 293
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVGN+ + +T++ L E ++ G V I+YD SRGFG+V SVEEAK+AI
Sbjct: 82 ATVYVGNILFDITAADLKEYASKYGKVLGTRIIYD-SRGLSRGFGYVRFESVEEAKKAID 140
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
S+ GR + VNF +V E+ Q ++ I+ GN+ +T + L
Sbjct: 141 EMHLSEYEGRKLSVNFAQVDLRDEQP----------QRKMEPTRTIFVGNIAHQVTDRDL 190
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F P + +V +R TG RGF F E + + + G
Sbjct: 191 HALFDDIPNVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEMLKG 237
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGN+ + +T L +F + V + DR T RGF VE A +
Sbjct: 176 IFVGNIAHQVTDRDLHALFDDIPNVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEML 235
Query: 175 DGSQIGGRTVKVNF 188
G GR +++++
Sbjct: 236 KGQAPYGRPLRLDY 249
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I GR V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGRPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A+D MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGML 162
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGDDMNDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 MFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G + G+++ V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G VAS + D VT RS G+ +V S + ++A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 118 EELNYTPIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDVAIDNKA 162
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + TG S+G+GFV +ET E A+ +NG++
Sbjct: 163 LHDTFAAFGNILSCKVAQDE-TGASKGYGFVHYETDEAAAQAIKHVNGML 211
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D T S+G+GFV + E A +AI+
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-TGASKGYGFVHYETDEAAAQAIKHV 207
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + +P+ ++ K + F + +Y N+ +T R+
Sbjct: 208 NGMLLNEKKVYVGY-HIPKKDRQS----KFEEMKANFTN----VYVKNISPDVTDNEFRE 258
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F+ + G +++ + G+SRGFGFV F T E A+D +NG
Sbjct: 259 LFE-KYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAYKAVDELNG 302
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 83/213 (38%), Gaps = 55/213 (25%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T + E+F + G V S+ + D+ +SRGFGFV + E A +A+
Sbjct: 242 VYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQ-EGKSRGFGFVNFTTHEAAYKAVDEL 300
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+G+ G+ + V R ++ +L+ SY+ ++ K +Y NL +
Sbjct: 301 NGNDFRGQELYVG-----RAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVD 355
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYT----------------------------------- 253
LR F + SAKV+ +
Sbjct: 356 DDKLRQMFSEFGPITSAKVMRDSLQEGEEEVKDQEKDKENQKEAENEAEAESAENAEKKA 415
Query: 254 --------GRSRGFGFVTFETAEDLQSALDAMN 278
G+S+GFGFV F +D A+ MN
Sbjct: 416 EKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMN 448
>gi|326926008|ref|XP_003209198.1| PREDICTED: nucleolin-like [Meleagris gallopavo]
Length = 425
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 18/179 (10%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
++E + E+ L V NL Y+ + +L E+F +A ++ + R +G+ FV
Sbjct: 189 QQENQKGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQ----NNQGRPKGYAFVE 244
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
+ E+AKEA+ + ++I GR +++ F P +G N+ GF +
Sbjct: 245 FPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGN---------MNARGGFNQQSKTL 295
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L T + LR++F+G +SA+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 296 FVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 351
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 18/170 (10%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A L+V NLPY +T + VF A V +V ++ S+G ++ + EA++A
Sbjct: 110 DARTLFVKNLPYRVTEEEMKNVFENALEV---RLVLNK-EGSSKGMAYIEFKTEAEAEKA 165
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G+++ GR + +++ GE++ Q + +G + NL + + +
Sbjct: 166 LEEKQGTEVDGRAMVIDYT-----GEKSQ-----QENQKGGERESKTLIVNNLSYAASEE 215
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L++ F+ + + + GR +G+ FV F TAED + AL++ N
Sbjct: 216 TLQELFKKATSI----KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNT 261
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V L T +L E F G++ SA IV DR T S+GFGFV S E+AK A
Sbjct: 295 LFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 351
Query: 175 DGSQIGGRTVKVNFPEVPRG 194
+ +I G V ++F + P+G
Sbjct: 352 EDGEIDGNKVILDFAK-PKG 370
>gi|193215305|ref|YP_001996504.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
gi|193088782|gb|ACF14057.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
Length = 104
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y++T + L +VF+E G VASA I+ D+ + +SRGFGFV M + +A++AI
Sbjct: 3 IYVGNLSYTLTENELRDVFSEYGEVASANIIVDKYSGKSRGFGFVDMPNEADAEQAIEAL 62
Query: 175 DGSQIGGRTVKVNFPEVPRGGERA 198
+GSQ+ GR++KVN PR +R+
Sbjct: 63 NGSQLDGRSLKVNEAR-PRSNDRS 85
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
IY GNL + LT LRD F + SA +I ++Y+G+SRGFGFV D + A++A
Sbjct: 2 NIYVGNLSYTLTENELRDVFSEYGEVASANIIVDKYSGKSRGFGFVDMPNEADAEQAIEA 61
Query: 277 MNG 279
+NG
Sbjct: 62 LNG 64
>gi|302659529|ref|XP_003021453.1| nucleic acid-binding protein [Trichophyton verrucosum HKI 0517]
gi|291185354|gb|EFE40835.1| nucleic acid-binding protein [Trichophyton verrucosum HKI 0517]
Length = 293
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVGN+ + +T++ L E ++ G V I+YD SRGFG+V SVEEAK+AI
Sbjct: 82 ATVYVGNILFDITAADLKEYASKYGKVLGTRIIYD-SRGLSRGFGYVRFESVEEAKKAID 140
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
S+ GR + VNF +V E+ Q ++ I+ GN+ +T + L
Sbjct: 141 EMHLSEYEGRKLSVNFAQVDLRDEQP----------QRKMEPTRTIFVGNIAHQVTDRDL 190
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F P + +V +R TG RGF F E + + + G
Sbjct: 191 HALFDDIPNVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEMLKG 237
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGN+ + +T L +F + V + DR T RGF VE A +
Sbjct: 176 IFVGNIAHQVTDRDLHALFDDIPNVFDVRVAVDRRTGMPRGFAHAEFTDVESAIAGFEML 235
Query: 175 DGSQIGGRTVKVNF 188
G GR +++++
Sbjct: 236 KGQAPYGRPLRLDY 249
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 17/168 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + DR T RS G+ V +E+A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + S+ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFVKNLDRSIDSKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
D F +LS KV+ + S+G+GFV FET E+ + A++ MNG+
Sbjct: 116 YDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMNGM 161
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 14/166 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ S +L + F+ G + S ++V D + S+G+GFV + EEA+ AI
Sbjct: 101 IFVKNLDRSIDSKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 175 DGSQIGGRTVKV-NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R +A +G + + F + +Y NLG + + L+
Sbjct: 159 NGMFLNDRKVFVGRFKS--RRDRQAELGARAKE----FTN----VYIKNLGEDMDDERLQ 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED + A+D MNG
Sbjct: 209 GLFSKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMNG 253
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 24/191 (12%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ NL M L +F++ G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI-------- 218
A++A+ +G + G+ + V R ++ +L++ + HK+
Sbjct: 244 ARKAVDEMNGKDLNGKQIYVG-----RAQKKVERQTELKHKFGQMKQDKHKVEQVPQDIS 298
Query: 219 --------YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
Y NL G+ + LR F + SAKV E GRS+GFGFV F + E+
Sbjct: 299 VRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEA 356
Query: 271 QSALDAMNGVV 281
A+ MNG +
Sbjct: 357 TKAVTEMNGRI 367
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
++++ VE+ + ++ + LYV NL + L + F+ GT+ SA++ +
Sbjct: 284 KQDKHKVEQVPQ-DISVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GG 340
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
RS+GFGFV S EEA +A+ +G + + + V + R ER A L N Y
Sbjct: 341 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ--RKEERQA---HLSNQY 392
>gi|315046346|ref|XP_003172548.1| hypothetical protein MGYG_05139 [Arthroderma gypseum CBS 118893]
gi|311342934|gb|EFR02137.1| hypothetical protein MGYG_05139 [Arthroderma gypseum CBS 118893]
Length = 304
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVGN+ + +T++ L E ++ G V I+YD SRGFG+V SVEEAK+AI
Sbjct: 94 ATIYVGNILFDITAADLKEFASKYGKVLGTRIIYD-TRGLSRGFGYVRFQSVEEAKKAID 152
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
S+ GR + VNF ++ E+ P+ Q ++ I+ GN+ +T + L
Sbjct: 153 EMHLSEYEGRKLSVNFAQIELREEQ----PQKQ------MEPTRTIFVGNIAHQITERDL 202
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F P + +V +R TG RGF F E + + + G
Sbjct: 203 HAIFDDIPNVFDVRVAVDRRTGMPRGFVHAEFTDVESAIAGFEILKG 249
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGN+ + +T L +F + V + DR T RGF VE A +
Sbjct: 188 IFVGNIAHQITERDLHAIFDDIPNVFDVRVAVDRRTGMPRGFVHAEFTDVESAIAGFEIL 247
Query: 175 DGSQIGGRTVKVNF 188
G GR +++++
Sbjct: 248 KGQAPYGRPLRLDY 261
>gi|195399065|ref|XP_002058141.1| GJ15655 [Drosophila virilis]
gi|194150565|gb|EDW66249.1| GJ15655 [Drosophila virilis]
Length = 340
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +Y G L ++ + L E+F +AG V + + DRVT +G+GFV S E
Sbjct: 6 IAERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ ++VN +++Q +D I+ GNL
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN----------------KASAHQKNLDVGANIFIGNLDV 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG+S+GF F+ F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKGFAFINFASFEASDAAMDAMNG 164
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A +++GNL + L + F+ G + + +I+ D T +S+GF F+ S E +
Sbjct: 97 DVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKGFAFINFASFEASD 156
Query: 169 EAIRLFDGSQIGGRTVKVN--FPEVPRGGERAAMGPKL---QNSYQGFVDSPHKIYA 220
A+ +G + R + V+ F + +G + +L QN D PH+++A
Sbjct: 157 AAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNP-SAHADRPHQLFA 212
>gi|151945512|gb|EDN63753.1| cleavage and polyadenylation factor CF I component involved in
pre-mRNA 3'-end processing [Saccharomyces cerevisiae
YJM789]
gi|190407229|gb|EDV10496.1| nuclear polyadenylated RNA-binding protein 4 [Saccharomyces
cerevisiae RM11-1a]
gi|207341455|gb|EDZ69508.1| YOL123Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270127|gb|EEU05357.1| Hrp1p [Saccharomyces cerevisiae JAY291]
Length = 534
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
+ SV+E + + DG I + +PR + D
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKVIDPKRA------IPRDEQ----------------DKTG 243
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
KI+ G +G + + + F ++ A+++ ++ TG+SRGFGFVT+++A+
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 295
>gi|442771473|gb|AGC72159.1| RNA-binding protein [uncultured bacterium A1Q1_fos_560]
Length = 98
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++YVG LPYS T L+++FA G V SA I+ D+ T +SRGFGFV M EA+ AI
Sbjct: 2 GSKIYVGGLPYSTTEQQLSDLFAVHGAVTSARIITDKFTGQSRGFGFVEMSGDSEAQAAI 61
Query: 172 RLFDGSQIGGRTVKVN--FPEVPR 193
+G+Q GGRT+ VN P+ PR
Sbjct: 62 NALNGTQFGGRTLTVNEARPQEPR 85
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
KIY G L + T Q L D F + SA++I +++TG+SRGFGFV + Q+A++A
Sbjct: 4 KIYVGGLPYSTTEQQLSDLFAVHGAVTSARIITDKFTGQSRGFGFVEMSGDSEAQAAINA 63
Query: 277 MNGV 280
+NG
Sbjct: 64 LNGT 67
>gi|356548971|ref|XP_003542872.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 409
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 94/176 (53%), Gaps = 16/176 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
DE L++G+L Y M + L FA G V S +++ ++ T +S G+GF+ S A+
Sbjct: 63 DEVRTLWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAGAER 122
Query: 170 AIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLGWG 226
++ ++G+ + GG++ ++N+ GER+ DSP + I+ G+L
Sbjct: 123 ILQTYNGAIMPNGGQSFRLNWATF-SAGERSRHD-----------DSPDYTIFVGDLAAD 170
Query: 227 LTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+T L++ F+ + + AKV+ +R TGR++G+GFV F + A+ M GV+
Sbjct: 171 VTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSDESEQVRAMTEMQGVL 226
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 20/177 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DR+T R++G+GFV E A+
Sbjct: 162 IFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSDESEQVRAMTE 221
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFV-------DSPHK--IYAGNLG 224
G R +++ P + + + SYQ + P+ I+ GNL
Sbjct: 222 MQGVLCSTRPMRIG----PASNKTPTTQSQPKASYQNSQPQGSQNENDPNNTTIFVGNLD 277
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+T LR F L+ K+ + GFV F + AL +NG +
Sbjct: 278 PNVTDDHLRQVFSQYGELVHVKIP------AGKRCGFVQFADRSCAEEALRVLNGTL 328
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 13/115 (11%)
Query: 78 TEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAG 137
T +Q +P+ + + + + + E +P ++VGNL ++T L +VF++ G
Sbjct: 241 TPTTQSQPKASYQNSQPQGS-QNENDPNNTT------IFVGNLDPNVTDDHLRQVFSQYG 293
Query: 138 TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192
E+V+ ++ R GFV A+EA+R+ +G+ +GG+ V++++ P
Sbjct: 294 -----ELVHVKIPAGKR-CGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSP 342
>gi|171690010|ref|XP_001909937.1| hypothetical protein [Podospora anserina S mat+]
gi|170944960|emb|CAP71071.1| unnamed protein product [Podospora anserina S mat+]
Length = 565
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 11/182 (6%)
Query: 102 EEPKVAASDEAAR--LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+ P DE R ++V L + + L E F + G VA A+IV DRV++RS+G G+V
Sbjct: 166 DSPPPLTEDERDRRTVFVQQLAARLRTKELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYV 225
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKI 218
+ + + A++L G ++ G V V E + R P ++ + P H++
Sbjct: 226 EFKNEDSVQAALQLT-GQKLLGIPVIVQLTEAEK--NRQVRNPDATGNHPNSI--PFHRL 280
Query: 219 YAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
Y GN+ + +T Q L++ F +P G L + + TGRSRG+GFV F A + AL+ M
Sbjct: 281 YVGNIHFSITEQDLQNVF--EPFGELEFVQLQKDDTGRSRGYGFVQFRDATQAREALEKM 338
Query: 278 NG 279
NG
Sbjct: 339 NG 340
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGN+ +S+T L VF G + ++ D T RSRG+GFV +A+EA+
Sbjct: 279 RLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDD-TGRSRGYGFVQFRDATQAREALEK 337
Query: 174 FDGSQIGGRTVKV 186
+G + GR ++V
Sbjct: 338 MNGFDLAGRPIRV 350
>gi|116180414|ref|XP_001220056.1| hypothetical protein CHGG_00835 [Chaetomium globosum CBS 148.51]
gi|88185132|gb|EAQ92600.1| hypothetical protein CHGG_00835 [Chaetomium globosum CBS 148.51]
Length = 475
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 2/173 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S+++A L+VGNL + + ++L E F + SA +V D+ T RSRGFG+V S E A+
Sbjct: 217 SEKSATLWVGNLGWGVDDNALYEEFQSIEGIVSARVVSDKETGRSRGFGYVDFDSAEAAQ 276
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP--HKIYAGNLGWG 226
+A G+ + GR ++++F P + G V SP ++ GNL +
Sbjct: 277 KAYDEKSGAFLQGRDLRLDFASKPSADSAPNARAADRAKKHGDVISPPSDTLFVGNLPFS 336
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + F + S ++ ++ +GR +GF +VTF + +D + +A+NG
Sbjct: 337 ADESSVSNYFNEVAQVQSLRIPTDQESGRPKGFAYVTFSSIDDAKKVFEALNG 389
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VGNLP+S SS++ F E V S I D+ + R +GF +VT S+++AK+
Sbjct: 328 LFVGNLPFSADESSVSNYFNEVAQVQSLRIPTDQESGRPKGFAYVTFSSIDDAKKVFEAL 387
Query: 175 DGSQIGGRTVKVNFPEVPR 193
+G + GR V++++ + PR
Sbjct: 388 NGGDLDGRPVRLDYAK-PR 405
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I GR V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGRPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A+D MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGML 162
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
A++A+ G + G+++ V E+ R E+ M YQG +
Sbjct: 244 AQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQ--MNQDRITRYQGV-----NL 296
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MN
Sbjct: 297 YVKNLDDGIDDERLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 279 GVV 281
G +
Sbjct: 355 GRI 357
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGDDMNDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + G+S+GFGFV+FE ED Q A+D M G
Sbjct: 210 MFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMYG 253
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|346971381|gb|EGY14833.1| nucleolar protein [Verticillium dahliae VdLs.17]
Length = 785
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 93/189 (49%), Gaps = 16/189 (8%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
+PK A + L+V +LP TS SLA+ F++ V A +V D+ T SRGFGFVT+
Sbjct: 28 KPKKAKVEANRSLFVRSLPPDATSESLADYFSQHFPVKHATVVVDQATKESRGFGFVTLT 87
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKVNFPE---------VPRGGERAAMG--PKLQNSYQGF 211
E+A EA + GR + V+ E PR A +G K Q + +
Sbjct: 88 DAEDALEAKAKLNNELWEGRRITVDLAEARNRDQNSSAPRTATLAPVGKQKKSQAIEEAW 147
Query: 212 VDSPHKIYAGNLGWGL-TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
V SP K+ NL W + T L+ FQ + A + GR RGFGFVT ++
Sbjct: 148 V-SP-KLIIRNLPWSIKTPAQLQALFQSYGKIKFADLPMN--NGRLRGFGFVTIRGEKNA 203
Query: 271 QSALDAMNG 279
++A+ AMNG
Sbjct: 204 ENAIKAMNG 212
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 114 RLYVGNLPYSM-TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+L + NLP+S+ T + L +F G + A++ + R RGFGFVT+ + A+ AI+
Sbjct: 151 KLIIRNLPWSIKTPAQLQALFQSYGKIKFADLPMN--NGRLRGFGFVTIRGEKNAENAIK 208
Query: 173 LFDGSQIGGRTVKVNF 188
+G I GRT+ V++
Sbjct: 209 AMNGKGIDGRTIAVDW 224
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 102 EEPKVA--ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
E+P+ A ++ + +++ NLP++ T L FA G V A +V DR TDR G GFV
Sbjct: 342 EQPETAKKTTNNDSTVFIRNLPFTTTDEQLKSHFAVFGPVRYARVVMDRATDRPAGTGFV 401
Query: 160 TMGSVEEAKEAIRLFDGSQ 178
++K ++ SQ
Sbjct: 402 CFFDEADSKACVKNAPRSQ 420
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 88/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T + L ++F + G + S + D + RS G+G+V +V +A +A+ +
Sbjct: 31 LYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQALEVL 90
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G+ +++ + + P ++ S G IY NL + ++ L D
Sbjct: 91 NFTPVNGKPIRIMY---------SYRDPTIRKSGAG------NIYIKNLDKAIDNKALHD 135
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + G+S G+GFV F+ E ++A+D +NG++
Sbjct: 136 TFSAFGNILSCKVATDS-AGQSLGYGFVQFDNEESAKNAIDKLNGML 181
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 13/168 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +Y+ NL ++ + +L + F+ G + S ++ D +S G+GFV + E AK AI
Sbjct: 116 AGNIYIKNLDKAIDNKALHDTFSAFGNILSCKVATDS-AGQSLGYGFVQFDNEESAKNAI 174
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + + V V R ER + K + + +Y NL T +
Sbjct: 175 DKLNGMLLNDKQVYVG--PFLRRQERESGTDKTKF---------NNVYVKNLSETTTEED 223
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L+ F G+ G +++ V+ G+SR FGFV FE +D +++A+NG
Sbjct: 224 LKKIF-GEYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEALNG 270
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL + T L ++F E G + SA ++ D +SR FGFV + ++A ++
Sbjct: 210 VYVKNLSETTTEEDLKKIFGEYGAITSAVVMRDG-DGKSRCFGFVNFENPDDAARSVEAL 268
Query: 175 DGSQIG------GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+G G+ K + EV G+ + + ++G +Y NL +T
Sbjct: 269 NGKTFDEKEWYVGKAQKKSEREVELKGQFEQTLKETVDKFEGL-----NLYVKNLDDSIT 323
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++ F + S KV+ + G S+G GFV + TAE+ AL MNG
Sbjct: 324 DDKLKELFSEFGTITSCKVMRDP-NGVSKGSGFVAYSTAEEASKALTEMNG 373
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E LYV NL S+T L E+F+E GT+ S +++ D S+G GFV + EEA +A
Sbjct: 309 EGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRD-PNGVSKGSGFVAYSTAEEASKA 367
Query: 171 IRLFDGSQIGGRTVKV 186
+ +G I + + V
Sbjct: 368 LTEMNGKMIVSKPLYV 383
>gi|190405722|gb|EDV08989.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 262
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 18/205 (8%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
+T+ + ++ E ++++++A E V S +A LYVG+L S++ + L ++F+
Sbjct: 4 ITDKTAEQLENLNIQDDQKQAATGSESQSVENS--SASLYVGDLEPSVSEAHLYDIFSPI 61
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
G+V+S + D +T S G+ +V E ++AI + + I GR ++ + +
Sbjct: 62 GSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQ------ 115
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
P L+ G I+ NL + ++ L D F +LS+K+ + G+S
Sbjct: 116 ---RDPSLRKKGSG------NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKS 165
Query: 257 RGFGFVTFETAEDLQSALDAMNGVV 281
+GFGFV FE + A+DA+NG++
Sbjct: 166 KGFGFVHFEEEGAAKEAIDALNGML 190
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL + + +L + F+ G + S++I D +S+GFGFV AKEAI
Sbjct: 125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAI 183
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
+G + G+ + V P + R ER + + + Y H++
Sbjct: 184 DALNGMLLNGQEIYV-APHLSR-KERDSQLEETKAHYTNLYVKTHQL 228
>gi|260841407|ref|XP_002613907.1| hypothetical protein BRAFLDRAFT_268603 [Branchiostoma floridae]
gi|229299297|gb|EEN69916.1| hypothetical protein BRAFLDRAFT_268603 [Branchiostoma floridae]
Length = 321
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 10/168 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A L++ NL Y+ T S+ EVF +A V I R + RS+G ++ S + +E
Sbjct: 18 DARSLFLKNLSYNSTVESVMEVFTDAVDV---RIPVYRDSGRSKGIAYLEFESEAKVEEV 74
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
DG ++ GR+V +++ G + G Q S +G + NL W TS+
Sbjct: 75 KSTMDGVEVDGRSVVMDYV----GAKAQFTGRPQQGSGRGPGTPSKTLVVRNLSWDTTSE 130
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
GL AF+G L A+VI + T RSRGFG+V FE+ E + A+D MN
Sbjct: 131 GLMQAFEGS---LDARVIMKPGTDRSRGFGYVDFESEEAAKEAMDDMN 175
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V NL + TS L + F G++ A ++ TDRSRGFG+V S E AKEA+
Sbjct: 118 LVVRNLSWDTTSEGLMQAFE--GSL-DARVIMKPGTDRSRGFGYVDFESEEAAKEAMDDM 174
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ S++ GRT+ V F G Y + + + NL + L +
Sbjct: 175 NQSELDGRTINVEFGTGR-----RGGGGGGGGGYGSHLQASKTLIVKNLSYDTGEDDLLE 229
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF G + A+V+ +R + RS+GFG++ F++ + + AL M+G
Sbjct: 230 AF---VGCIDARVVTDRESRRSKGFGYIDFDSEDAAKEALKNMDG 271
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V NL Y L E F G + A +V DR + RS+GFG++ S + AKEA++
Sbjct: 213 LIVKNLSYDTGEDDLLEAFV--GCI-DARVVTDRESRRSKGFGYIDFDSEDAAKEALKNM 269
Query: 175 DGSQIGGRTVKVNF 188
DG ++ GR ++++F
Sbjct: 270 DGQELDGRGIRLDF 283
>gi|351697204|gb|EHB00123.1| Nucleolin [Heterocephalus glaber]
Length = 757
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ LY+ NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 529 SGESKTLYLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 584
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 585 EALNSCNKREIEGRTIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEETT 631
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ LR++F G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 632 EETLRESFDGS---IGARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 677
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 35/190 (18%)
Query: 100 EEEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
E+ + K + D AR L NLPY +T L EVF +A EI +S+G +
Sbjct: 426 EKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA-----VEIRLVSKDGKSKGIAY 480
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-SYQGFVDS--- 214
+ + +A++ G++I GR+V + + G K QN Y+G +S
Sbjct: 481 IEFKTEADAEKTFEEKQGTEIDGRSVSLYY-----------TGEKGQNQDYRGGKNSTWS 529
Query: 215 --PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAE 268
+Y NL + T + L++ F+ K F + G+S+G+ F+ F + E
Sbjct: 530 GESKTLYLSNLSYSATEETLQEVFE--------KATFIKVPQNQNGKSKGYAFIEFASFE 581
Query: 269 DLQSALDAMN 278
D + AL++ N
Sbjct: 582 DAKEALNSCN 591
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G++ A IV DR T S+GFGFV S E+
Sbjct: 613 ARSQPSKTLFVKGLSEETTEETLRESFD--GSIG-ARIVTDRETGSSKGFGFVDFNSEED 669
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 670 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 696
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T S L ++F + G V S + D + RS G+G+V G+ ++A A+ +
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G+ +++ + + P ++ S G I+ NL + + L D
Sbjct: 89 NFTPLHGKPIRIMY---------SNRDPTIRRSGNG------NIFIKNLDKAIDHKALHD 133
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+S+G+GFV +++ E Q A++ +NG++
Sbjct: 134 TFSAFGNILSCKVAVDS-SGQSKGYGFVQYDSEEAAQKAIEKLNGML 179
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ +L + F+ G + S ++ D + +S+G+GFV S E A++AI
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDS-SGQSKGYGFVQYDSEEAAQKAIEKL 175
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V P V R ER K + + ++ NL + LR
Sbjct: 176 NGMLLNDKQVYVG-PFV-RKHERDMAVDKTRFT---------NVFVKNLSESTLEEELRK 224
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F G+ G +++ + + G+SR FGFV FE AED A++A+NG
Sbjct: 225 IF-GEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNG 268
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F E G + S ++ D +SR FGFV + E+A A+
Sbjct: 208 VFVKNLSESTLEEELRKIFGEFGAITSVAVMKDE-DGKSRCFGFVNFENAEDAARAVEAL 266
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQG 231
+G ++ + V + ER + + + S + VD +Y NL ++ +
Sbjct: 267 NGYKLDNKDWFVG--RAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYIKNLDDSISDEK 324
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++ F + S KV+ + +G S+G GFV F E+ AL MNG
Sbjct: 325 LKELFSPYGTITSCKVMRDP-SGVSKGSGFVAFSNPEEASRALSEMNG 371
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 71 SFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAA--RLYVGNLPYSMTSSS 128
+ +G+++ +++ E E E E+ A D++ LY+ NL S++
Sbjct: 265 ALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYIKNLDDSISDEK 324
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
L E+F+ GT+ S +++ D + S+G GFV + EEA A+ +G + + + V
Sbjct: 325 LKELFSPYGTITSCKVMRDP-SGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLYV 381
>gi|226495169|ref|NP_001150649.1| nucleic acid binding protein [Zea mays]
gi|195640856|gb|ACG39896.1| nucleic acid binding protein [Zea mays]
Length = 420
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+E ++VG+L Y M + L F +G V + +++ +R T +S G+GFV S A
Sbjct: 94 GCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASA 153
Query: 168 KEAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
++A++ F G + R K+N+ G +R+ V S H I+ G+L
Sbjct: 154 EKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSE------------VASDHSIFVGDLAA 201
Query: 226 GLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T + L + F + + AKVI + TGRSRG+GFV F D A+ MNGV
Sbjct: 202 DVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMSEMNGV 257
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 15/197 (7%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFA-EAGTVASAE 143
P T++ + + E+ ASD + ++VG+L +T L E+F+ + +V A+
Sbjct: 166 PNTDRPFKLNWASYSMGEKRSEVASDHS--IFVGDLAADVTDEMLLELFSSKYRSVKGAK 223
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
++ D T RSRG+GFV G + A+ +G R +++ P PR +
Sbjct: 224 VIIDANTGRSRGYGFVRFGDDNDKSHAMSEMNGVYCSTRPIRIG-PATPRRSSGDSGSST 282
Query: 204 LQNSYQGFVDSPHK-IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFV 262
+S G DS ++ +Y G L ++ LR AF + L S K+ + GFV
Sbjct: 283 PGHS-DG--DSSNRTVYVGGLDPNVSEDELRKAF-AKYDLASVKIPLGKQC------GFV 332
Query: 263 TFETAEDLQSALDAMNG 279
F + D + AL +NG
Sbjct: 333 QFVSRTDAEEALQGLNG 349
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
I+ G+L + + L + F +++ KVI R TG+S G+GFV F + + AL
Sbjct: 101 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASAEKALQNF 160
Query: 278 NGVV 281
G V
Sbjct: 161 TGHV 164
>gi|195060144|ref|XP_001995761.1| GH17589 [Drosophila grimshawi]
gi|193896547|gb|EDV95413.1| GH17589 [Drosophila grimshawi]
Length = 340
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +Y G L ++ + L E+F +AG V + + DRVT +G+GFV S E
Sbjct: 6 IAERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ ++VN +++Q +D I+ GNL
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN----------------KASAHQKNLDVGANIFIGNLDV 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG+S+GF F+ F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKGFAFINFASFEASDAAMDAMNG 164
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A +++GNL + L + F+ G + + +I+ D T +S+GF F+ S E +
Sbjct: 97 DVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKGFAFINFASFEASD 156
Query: 169 EAIRLFDGSQIGGRTVKVN--FPEVPRGGERAAMGPKL---QNSYQGFVDSPHKIYA 220
A+ +G + R + V+ F + +G + +L QN D PH+++A
Sbjct: 157 AAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNP-SAHADRPHQLFA 212
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S + A LY G+L +T + L EVF G VAS + D VT +S G+ ++ +V +A+
Sbjct: 44 SQQFASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAE 103
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
A+ + S I GR ++ + + P L+ S G +Y NL +
Sbjct: 104 RALDTLNYSPIKGRPCRLMW---------SHRDPALRRSGAG------NVYVKNLDRNID 148
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
++ L D F +LS KV G+SRGFGFV FE+ E ++A+ +NG+
Sbjct: 149 NKALYDTFSLFGNILSCKVALTP-DGKSRGFGFVHFESDESAEAAIAKLNGM 199
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +YV NL ++ + +L + F+ G + S ++ +SRGFGFV S E A+ AI
Sbjct: 135 AGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALT-PDGKSRGFGFVHFESDESAEAAI 193
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G QIG +TV V + ER PK F + +Y ++ +
Sbjct: 194 AKLNGMQIGEKTVYV--APFKKTAERNDGTPK------NFTN----VYIKHIPASWNEEK 241
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+++ F G G +++ + GR F FV + E ++A++ M+G
Sbjct: 242 IKEEF-GAFGEITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMDG 286
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAIR 172
LYV NL + + L ++F GTV S +++ D D+ SRGFGFV + EEA +A+
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVD---DKGVSRGFGFVCFSTHEEATKAVT 433
Query: 173 LFDGSQIGGRTVKVNFPE 190
IGG+ + V E
Sbjct: 434 DMHLKLIGGKPLYVGMHE 451
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T S L ++F + G V S + D + RS G+G+V G+ ++A A+ +
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G+ +++ + + P ++ S G I+ NL + + L D
Sbjct: 89 NFTPLHGKPIRIMY---------SNRDPTIRRSGNG------NIFIKNLDKAIDHKALHD 133
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+S+G+GFV +++ E Q A++ +NG++
Sbjct: 134 TFSAFGNILSCKVAVDS-SGQSKGYGFVQYDSDEAAQKAIEKLNGML 179
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ +L + F+ G + S ++ D + +S+G+GFV S E A++AI
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDS-SGQSKGYGFVQYDSDEAAQKAIEKL 175
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V P V R ER K + + ++ NL + LR
Sbjct: 176 NGMLLNDKQVYVG-PFV-RKQERDMAVDKTRFT---------NVFVKNLSESTLEEELRK 224
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F G+ G +++ + + G+SR FGFV FE AED A++A+NG
Sbjct: 225 IF-GEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNG 268
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 7/185 (3%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
V ++E ++V NL S L ++F E GT+ S ++ D +SR FG
Sbjct: 191 VRKQERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDE-DGKSRCFG 249
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH 216
FV + E+A A+ +G ++ + V + ER + + + S Q VD
Sbjct: 250 FVNFENAEDAARAVEALNGYKLDNKDWFVG--RAQKKSEREMELKHRFEQSAQEAVDKSQ 307
Query: 217 --KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+Y NL ++ L++ F + S KV+ + +G S+G GFV F T E+ AL
Sbjct: 308 GLNLYLKNLDDSISDDKLKELFSPYGTITSCKVMRDP-SGVSKGSGFVAFSTPEEASRAL 366
Query: 275 DAMNG 279
MNG
Sbjct: 367 SEMNG 371
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 71 SFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAA--RLYVGNLPYSMTSSS 128
+ +G+++ +++ E E E E+ A D++ LY+ NL S++
Sbjct: 265 ALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDK 324
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
L E+F+ GT+ S +++ D + S+G GFV + EEA A+ +G + + + V
Sbjct: 325 LKELFSPYGTITSCKVMRDP-SGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYV 381
>gi|194703366|gb|ACF85767.1| unknown [Zea mays]
Length = 420
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+E ++VG+L Y M + L F +G V + +++ +R T +S G+GFV S A
Sbjct: 94 GCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASA 153
Query: 168 KEAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
++A++ F G + R K+N+ G +R+ V S H I+ G+L
Sbjct: 154 EKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSE------------VASDHSIFVGDLAA 201
Query: 226 GLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T + L + F + + AKVI + TGRSRG+GFV F D A+ MNGV
Sbjct: 202 DVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMSEMNGV 257
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 15/197 (7%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFA-EAGTVASAE 143
P T++ + + E+ ASD + ++VG+L +T L E+F+ + +V A+
Sbjct: 166 PNTDRPFKLNWASYSMGEKRSEVASDHS--IFVGDLAADVTDEMLLELFSSKYRSVKGAK 223
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
++ D T RSRG+GFV G + A+ +G R +++ P PR +
Sbjct: 224 VIIDANTGRSRGYGFVRFGDDNDKSHAMSEMNGVYCSTRPIRIG-PATPRRSSGDSGSST 282
Query: 204 LQNSYQGFVDSPHK-IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFV 262
+S G DS ++ +Y G L ++ LR AF + L S K+ + GFV
Sbjct: 283 PGHS-DG--DSSNRTVYVGGLDPNVSEDELRKAF-AKYDLASVKIPLGKQC------GFV 332
Query: 263 TFETAEDLQSALDAMNG 279
F + D + AL +NG
Sbjct: 333 QFVSRTDAEEALQGLNG 349
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
I+ G+L + + L + F +++ KVI R TG+S G+GFV F + + AL
Sbjct: 101 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASAEKALQNF 160
Query: 278 NGVV 281
G V
Sbjct: 161 TGHV 164
>gi|294877868|ref|XP_002768167.1| Nucleolysin TIAR, putative [Perkinsus marinus ATCC 50983]
gi|239870364|gb|EER00885.1| Nucleolysin TIAR, putative [Perkinsus marinus ATCC 50983]
Length = 474
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 97/196 (49%), Gaps = 32/196 (16%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT-------MG 162
D+ +++VG LP +L E F++ G V + ++ DR T RSRGFGFVT +G
Sbjct: 154 DDTKKVFVGGLPREADKPALDEYFSQFGPVEDSVVMMDRFTGRSRGFGFVTFETKEQMLG 213
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKV----NFPEVPRGGERAAMG-----PKLQNSYQ---- 209
V A I G+TV+V N ER + G P+ + Y
Sbjct: 214 CVAAAPHVIM--------GKTVEVRRSINDDGTSTANERRSAGKGSGAPRSYDDYSSGKG 265
Query: 210 --GFVD-SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266
G D +P+K++ G L +TS LRD F L+ VI +R TG+SRGFG++T+E
Sbjct: 266 KGGHRDQNPNKLFVGGLPREVTSDVLRDFFIQYGNLVDCTVITDRMTGQSRGFGYITYED 325
Query: 267 AEDLQSAL-DAMNGVV 281
++A+ ++ N V+
Sbjct: 326 LAAAEAAISNSANNVI 341
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG LP +TS L + F + G + ++ DR+T +SRGFG++T + A+ AI
Sbjct: 276 KLFVGGLPREVTSDVLRDFFIQYGNLVDCTVITDRMTGQSRGFGYITYEDLAAAEAAISN 335
Query: 174 FDGSQIGGRTVKV 186
+ I G+ V V
Sbjct: 336 SANNVIDGKWVDV 348
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +T S L E+F+ G + S + D T RS G+ ++ +A+ A+
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ I G+ +++ + G ++ MG I+ NL + ++ L D
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSGMG---------------NIFIKNLENSIDNKALYD 117
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS+KV++ + SRGFGFV FET E Q A++ MNG++
Sbjct: 118 TFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTMNGML 162
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G++ S+++VY+ SRGFGFV + E A++AI
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R A +G + GF + IY NL + Q L+D
Sbjct: 159 NGMLLNDRKVFVGHFK-SRQKREAELGARAL----GFTN----IYVKNLHANVDEQRLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + S KV+ + G+SRGFGFV FE E+ Q A+D MNG
Sbjct: 210 LFSQFGNMQSVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHMNG 253
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 18/175 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL ++ L ++F++ G + S +++ D +SRGFGFV EEA++A+
Sbjct: 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA--------MGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+G ++ G+ + V + + ER + M + QN YQG +Y NL
Sbjct: 252 NGKEVSGQLLYVGRAQ--KRAERQSELKRRFEQMKQERQNRYQGV-----NLYVKNLDDS 304
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ + L++ F + SAKV+ E + S+GFGFV F + E+ A+ MNG +
Sbjct: 305 INDERLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q E + E + E +++E + + + LYV NL S+ L EVF+ G +
Sbjct: 266 AQKRAERQSELKRRFEQMKQERQNRY----QGVNLYVKNLDDSINDERLKEVFSTYGVIT 321
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
SA+++ + + S+GFGFV S EEA +A+ +G +G + + V + R ER A+
Sbjct: 322 SAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ--RKEERKAI 377
Query: 201 GPKLQNSYQ 209
L N Y+
Sbjct: 378 ---LTNQYR 383
>gi|348666125|gb|EGZ05953.1| hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae]
Length = 356
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 14/172 (8%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL +++ L + +AGTV A+++ + RS+G G V + EEA +AI
Sbjct: 179 RVYVGNLSWNVKWQELKDHMKKAGTVVHADVL-EEPNGRSKGCGLVEYATQEEAAKAIAE 237
Query: 174 FDGSQIGGRTVKVNFPEVPRGGE-----RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+ +++ GR + V P GG + A P+ S +G ++Y GNL W
Sbjct: 238 LNNTELEGRLIFVREDREPEGGSISKFAKRAAAPR--GSGEG-----RQLYVGNLPWETN 290
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
Q L+D F+ G + I E GRSRGFG + + A D A++ +NG+
Sbjct: 291 WQQLKDLFR-TVGDVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGL 341
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 98/201 (48%), Gaps = 22/201 (10%)
Query: 78 TEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAG 137
T+ Q P EQ E+++ +E+ A+ R+YVGNL +S+ L + AG
Sbjct: 61 TQQQQAGPILEQRGEDDDVDMEQ-------AAAVGCRVYVGNLSWSIKWQDLKDHMQAAG 113
Query: 138 TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGER 197
V A ++ RS+G G VT + E A+ AI + +++GGR + V E
Sbjct: 114 PVELATVL--ESNGRSKGCGIVTYETEEAAQNAIATLNDTELGGRKIFVR--EDREAQPV 169
Query: 198 AAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSR 257
+A+ PK +GF ++Y GNL W + Q L+D + ++ A V+ E GRS+
Sbjct: 170 SAVKPK-----RGF-----RVYVGNLSWNVKWQELKDHMKKAGTVVHADVL-EEPNGRSK 218
Query: 258 GFGFVTFETAEDLQSALDAMN 278
G G V + T E+ A+ +N
Sbjct: 219 GCGLVEYATQEEAAKAIAELN 239
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E +LYVGNLP+ L ++F G V A+I + RSRGFG + + +A
Sbjct: 274 SGEGRQLYVGNLPWETNWQQLKDLFRTVGDVERADIA-EYPDGRSRGFGIIRYTNAADAW 332
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
+AI +G +I GR ++V
Sbjct: 333 QAIERLNGLEIEGRLIEVRL 352
>gi|253181|gb|AAB22809.1| NSR1=nucleolin homolog [Saccharomyces cerevisiae, Peptide, 249 aa]
Length = 249
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 12/173 (6%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A ++VG L +S+ L + F G V A ++Y+R TDRSRG+G+V + A++A
Sbjct: 1 EPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKA 60
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLGWG 226
I+ G +I GR + + G + + F D+P + ++ GNL +
Sbjct: 61 IQEMQGKEIDGRPINCDMSTSKPAGN--------NDRAKKFGDTPSEPSDTLFLGNLSFN 112
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + F ++S ++ T + +GFG+V F ED + ALDA+ G
Sbjct: 113 ADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG 165
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S+ + L++GNL ++ ++ E+FA+ G V S I T++ +GFG+V ++E+AK
Sbjct: 98 SEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAK 157
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
+A+ G I R V+++F
Sbjct: 158 KALDALQGEYIDNRPVRLDF 177
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 16/188 (8%)
Query: 94 EEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
E AVE A +A LYVG L S+T + L E+F+ G VAS + D VT RS
Sbjct: 35 EVTAVENSTPAPAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRS 94
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD 213
G+ +V + + + A+ + + I G+ ++ + + P L+ + QG
Sbjct: 95 LGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG--- 142
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
++ NL + ++ L D F +LS KV + + G S+G+GFV +ETAE +A
Sbjct: 143 ---NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNA 198
Query: 274 LDAMNGVV 281
+ +NG++
Sbjct: 199 IKHVNGML 206
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 202
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + +Y NL + R
Sbjct: 203 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----VYIKNLDSEIDDDEFRK 253
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T E Q+A++ MN
Sbjct: 254 MFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 296
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ NL + ++F + G + SA + D+ +SRGFGFV + E A+ A+
Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHESAQAAVEEM 295
Query: 175 DGSQIGGRTVKVNFPEVPRGGER--------AAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ +I R+ K+ + ER A + + YQG +Y NL
Sbjct: 296 NDKEI--RSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV-----NLYVKNLTDD 348
Query: 227 LTSQGLRDAFQGQPGLLSAKVI 248
+ + LR+ F + SAKV+
Sbjct: 349 IDDEKLRELFGPYGTITSAKVM 370
>gi|225561960|gb|EEH10240.1| nucleic acid-binding protein [Ajellomyces capsulatus G186AR]
Length = 325
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 16/180 (8%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+ E EP +E +YVGNL + +T+ L A+ GT+ S IVYD SRGF +
Sbjct: 105 QREREPLPIKPNET--IYVGNLFFEVTAEDLKRDMAKFGTIYSVRIVYD-SRGMSRGFAY 161
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK- 217
V SVE A+ AI + S GR + VN+ R + P+ + S P K
Sbjct: 162 VQFDSVEAAEAAISEMNMSIYEGRRIVVNY------STRNSAAPRTRAS------EPTKT 209
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
++ GNL + +T + L D F+ P + +V ++ TGR RGF F E ++A++ +
Sbjct: 210 LFIGNLSFEMTDRELNDLFRDIPNVDDVRVSVDKRTGRPRGFAHADFLDVESAKAAMEIL 269
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P+ AS+ L++GNL + MT L ++F + V + D+ T R RGF
Sbjct: 199 PRTRASEPTKTLFIGNLSFEMTDRELNDLFRDIPNVDDVRVSVDKRTGRPRGFAHADFLD 258
Query: 164 VEEAKEAIRLFDGSQIGGRTVKVNF 188
VE AK A+ + GR +++++
Sbjct: 259 VESAKAAMEILKEKAPYGRPLRLDY 283
>gi|145491019|ref|XP_001431509.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145522722|ref|XP_001447205.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398614|emb|CAK64111.1| unnamed protein product [Paramecium tetraurelia]
gi|124414705|emb|CAK79808.1| unnamed protein product [Paramecium tetraurelia]
Length = 260
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 16/176 (9%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P + ++ A +Y+GNL +T + E+F + G V + I D+++ +G+GFV S
Sbjct: 10 PPLYERNQEATIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKS 69
Query: 164 VEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
E+A AI++ ++ G+ +KVN +A+ + Q + ++ GNL
Sbjct: 70 EEDADYAIKIMHMIKLYGKPIKVN---------KASQDKRTQ-------EVGANLFIGNL 113
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L + F +LS K++ TG S+G+GFV+++ E AL AMNG
Sbjct: 114 DTEIDEKTLYETFSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSDGALTAMNG 169
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A L++GNL + +L E F+ G + S +I+ + T S+G+GFV+ + E + A+
Sbjct: 105 GANLFIGNLDTEIDEKTLYETFSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSDGAL 164
Query: 172 RLFDGSQIGGRTVKVNFP-EVPRGGER---------AAMGPKLQNSYQGFV 212
+G +G + ++V + + GER AA P Q + GFV
Sbjct: 165 TAMNGQFLGTKIIRVEYAFKKDAKGERHGSQAERLLAANRPLAQKALLGFV 215
>gi|378731264|gb|EHY57723.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 562
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 10/180 (5%)
Query: 103 EPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
EP++ + R ++V L + + L + F +AG V A+IV DRV+ RS+G G+V
Sbjct: 158 EPQLTEDERDRRTVFVQQLAARLRTKELIQFFEKAGPVKEAQIVKDRVSGRSKGVGYVEF 217
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYA 220
+ E AI++ G ++ G + E + R A P+ S+ V P H++Y
Sbjct: 218 KNEESVPLAIQMT-GQKLLGIPIIAQLTEAEKN--RQARNPEASTSHHNSV--PFHRLYV 272
Query: 221 GNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GN+ + +T Q L++ F +P G L + + TGRSRG+GFV F + AL+ MNG
Sbjct: 273 GNIHFSITEQDLQNVF--EPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNG 330
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGN+ +S+T L VF G + ++ D T RSRG+GFV +A+EA+
Sbjct: 269 RLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQAREALEK 327
Query: 174 FDGSQIGGRTVKV 186
+G + GR ++V
Sbjct: 328 MNGFDLAGRPIRV 340
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S + A LY G+L +T + L EVF G VAS + D VT +S G+ ++ +V +A+
Sbjct: 44 SQQFASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAE 103
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
A+ + S I GR ++ + + P L+ S G +Y NL +
Sbjct: 104 RALDTLNYSPIKGRPCRLMW---------SHRDPALRRSGAG------NVYVKNLDRNID 148
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
++ L D F +LS KV G+SRGFGFV FE+ E ++A+ +NG+
Sbjct: 149 NKALYDTFSLFGNILSCKVALTP-DGKSRGFGFVHFESDESAEAAIAKLNGM 199
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +YV NL ++ + +L + F+ G + S ++ +SRGFGFV S E A+ AI
Sbjct: 135 AGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALT-PDGKSRGFGFVHFESDESAEAAI 193
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G QIG +TV V + ER PK F + +Y ++ +
Sbjct: 194 AKLNGMQIGEKTVYV--APFKKTAERNDGTPK------NFTN----VYIKHIPASWNEEK 241
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+++ F G G +++ + GR F FV + E ++A++ M+G
Sbjct: 242 IKEEF-GAFGEITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMDG 286
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAIR 172
LYV NL + + L ++F GTV S +++ D D+ SRGFGFV + EEA +A+
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVD---DKGVSRGFGFVCFSTHEEATKAVT 433
Query: 173 LFDGSQIGGRTVKVNFPE 190
IGG+ + V E
Sbjct: 434 DMHLKLIGGKPLYVGMHE 451
>gi|195620484|gb|ACG32072.1| nucleic acid binding protein [Zea mays]
gi|195625400|gb|ACG34530.1| nucleic acid binding protein [Zea mays]
Length = 369
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+E ++VG+L Y M + L F +G V + +++ +R T +S G+GFV S A
Sbjct: 43 GCEENKTIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASA 102
Query: 168 KEAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
++A++ F G + R K+N+ G +R+ V S H I+ G+L
Sbjct: 103 EKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSE------------VASDHSIFVGDLAA 150
Query: 226 GLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T + L + F + + AKVI + TGRSRG+GFV F D A+ MNGV
Sbjct: 151 DVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMSEMNGV 206
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 15/197 (7%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFA-EAGTVASAE 143
P T++ + + E+ ASD + ++VG+L +T L E+F+ + +V A+
Sbjct: 115 PNTDRPFKLNWASYSMGEKRSEVASDHS--IFVGDLAADVTDEMLLELFSSKYRSVKGAK 172
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
++ D T RSRG+GFV G + A+ +G R +++ P PR +
Sbjct: 173 VIIDANTGRSRGYGFVRFGDDNDKSHAMSEMNGVYCSTRPIRIG-PATPRRSSGDSGSST 231
Query: 204 LQNSYQGFVDSPHK-IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFV 262
+S G DS ++ +Y G L ++ LR AF + L S K+ + GFV
Sbjct: 232 PGHS-DG--DSSNRTVYVGGLDPNVSEDELRKAF-AKYDLASVKIPLGKQC------GFV 281
Query: 263 TFETAEDLQSALDAMNG 279
F + D + AL +NG
Sbjct: 282 QFVSRTDAEEALQGLNG 298
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
I+ G+L + + L + F +++ KVI R TG+S G+GFV F + + AL
Sbjct: 50 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASAEKALQNF 109
Query: 278 NGVV 281
G V
Sbjct: 110 TGHV 113
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +T S L E+F+ G + S + D T RS G+ ++ +A+ A+
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ I G+ +++ + G ++ MG I+ NL + ++ L D
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSGMG---------------NIFIKNLENSIDNKALYD 117
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS+KV++ + SRGFGFV FET E Q A++ MNG++
Sbjct: 118 TFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTMNGML 162
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G++ S+++VY+ SRGFGFV + E A++AI
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R A +G + GF + IY NL + Q L+D
Sbjct: 159 NGMLLNDRKVFVGHFK-SRQKREAELGARAL----GFTN----IYVKNLHANVDEQRLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + S KV+ + G+SRGFGFV FE E+ Q A+D MNG
Sbjct: 210 LFSQFGNMQSVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHMNG 253
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 18/175 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL ++ L ++F++ G + S +++ D +SRGFGFV EEA++A+
Sbjct: 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA--------MGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+G ++ G+ + V + + ER + M + QN YQG +Y NL
Sbjct: 252 NGKEVSGQLLYVGRAQ--KRAERQSELKRRFEQMKQERQNRYQGV-----NLYVKNLDDS 304
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ + L++ F + SAKV+ E + S+GFGFV F + E+ A+ MNG +
Sbjct: 305 INDERLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q E + E + E +++E + + + LYV NL S+ L EVF+ G +
Sbjct: 266 AQKRAERQSELKRRFEQMKQERQNRY----QGVNLYVKNLDDSINDERLKEVFSTYGVIT 321
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
SA+++ + + S+GFGFV S EEA +A+ +G +G + + V + R ER A+
Sbjct: 322 SAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ--RKEERKAI 377
Query: 201 GPKLQNSYQ 209
L N Y+
Sbjct: 378 ---LTNQYR 383
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 17/205 (8%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
VT++S E E+++E +E+ + P + + LYVG L S+T + L E+F+
Sbjct: 44 VTKEST-ETESKKETTQEKSSEASSGTPSDGNAPKNTSLYVGELDPSVTEAMLFEIFSTV 102
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
G VAS + D VT +S G+ +V + ++ ++A+ + S I GR ++ + +
Sbjct: 103 GPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKALEELNYSLIKGRACRIMWSQ------ 156
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
P L+ + G I+ NL + ++ L D F +LS KV + Y G S
Sbjct: 157 ---RDPSLRKTGTG------NIFIKNLDPAIDNKALHDTFSAFGTILSCKVALDEY-GNS 206
Query: 257 RGFGFVTFETAEDLQSALDAMNGVV 281
+G+GFV F + + +A++ +NG++
Sbjct: 207 KGYGFVHFASIDSANAAIEHVNGML 231
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + F+ GT+ S ++ D + S+G+GFV S++ A AI
Sbjct: 169 IFIKNLDPAIDNKALHDTFSAFGTILSCKVALDEYGN-SKGYGFVHFASIDSANAAIEHV 227
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V R Q+ ++ + +Y N+ +T +
Sbjct: 228 NGMLLNDKKVYVGHHVSRR---------DRQSKFEAMKANFTNVYIKNIDPEVTDEEFSG 278
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + + +G+ RGFGFV FE+ E Q A+D MN
Sbjct: 279 LFE-KFGAITSFSLVKDESGKPRGFGFVNFESHEAAQKAVDEMN 321
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ +T + +F + G + S +V D + + RGFGFV S E A++A+
Sbjct: 262 VYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDE-SGKPRGFGFVNFESHEAAQKAVDEM 320
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ + G+ + V R +R +L+ Y+ Y G NL +
Sbjct: 321 NDYEFHGKKLYVG-----RAQKRHEREAELRKRYEQMKLEKMSKYQGVNLFIKNLSDEVD 375
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L+ F + SAKV+ + G+S+GFGFV + + E+ A+ MN
Sbjct: 376 DNLLKTEFSAFGTITSAKVMTDE-NGKSKGFGFVCYSSPEEATKAIAEMN 424
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ L++ NL + + L F+ GT+ SA+++ D +S+GFGFV S EEA +A
Sbjct: 361 QGVNLFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTDE-NGKSKGFGFVCYSSPEEATKA 419
Query: 171 IRLFDGSQIGGRTVKV 186
I + + G+ + V
Sbjct: 420 IAEMNQRMLAGKPLYV 435
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++ + L E+F + G V S + D +T RS G+ +V S ++A A+ L
Sbjct: 30 LYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRALELL 89
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ S + G +++ F + P ++ S I+ NL + ++ L D
Sbjct: 90 NFSVLNGNPIRIMF---------SHRDPSIRKS------GTANIFIKNLDKTIDNKALHD 134
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F G+LS KV + +G+S+G+GFV FE E +A++ +NG++
Sbjct: 135 TFSAFGGILSCKVAVDG-SGQSKGYGFVQFEQEESALTAIEKVNGML 180
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 13/170 (7%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +++ NL ++ + +L + F+ G + S ++ D + +S+G+GFV E A AI
Sbjct: 116 ANIFIKNLDKTIDNKALHDTFSAFGGILSCKVAVDG-SGQSKGYGFVQFEQEESALTAIE 174
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + + V V P V R + G V + +Y NLG T L
Sbjct: 175 KVNGMLLNDKQVFVG-PFVRRQ----------ERDQSGGVSKFNNVYVKNLGENTTEDDL 223
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282
++ F G G +S+ V+ G+S+ FGFV FE ++ A++A+NG R
Sbjct: 224 KNVF-GAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAVEALNGKKR 272
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 17/190 (8%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
V +E + + +YV NL + T L VF GT++SA ++ D +S+ FG
Sbjct: 192 VRRQERDQSGGVSKFNNVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDS-DGKSKCFG 250
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQN-------SYQ 209
FV + A +A+ +G + + V + + ER A + K + YQ
Sbjct: 251 FVNFEHPDNAAKAVEALNGKKRDEKEWYVGRAQ--KKSEREAELRAKFEQERKERIEKYQ 308
Query: 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
G +Y NL + + LR+ F + S KV+ + G+SRG GFV F + E+
Sbjct: 309 GV-----NLYLKNLDDTVDDEKLRELFADYGTITSCKVMRDP-QGQSRGSGFVAFSSPEE 362
Query: 270 LQSALDAMNG 279
A+ MNG
Sbjct: 363 ATRAVTEMNG 372
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+ + E E E A E+E + + LY+ NL ++ L E+FA+ GT+ S +++
Sbjct: 283 QKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKLRELFADYGTITSCKVM 342
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D +SRG GFV S EEA A+ +G +G + + V
Sbjct: 343 RDP-QGQSRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLYV 382
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G VAS + D VT RS G+ +V S + ++A+
Sbjct: 58 SASLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 117
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I R ++ + + P L+ + QG I+ NL + ++
Sbjct: 118 EELNYTLIKNRPCRIMWSQ---------RDPALRKTGQG------NIFIKNLDAAIDNKA 162
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ET E Q A+ +NG++
Sbjct: 163 LHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAAQQAIKHVNGML 211
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A++AI+
Sbjct: 149 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAAQQAIKHV 207
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ +R + +++ +Y IY NL +T R
Sbjct: 208 NGMLLNEKKVYVGH-HIPKK-DRQSKFEEMKANYT-------NIYIKNLHADVTDDEFRK 258
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S+ + ++ TG+SRGFGF+ F T E A++ +N
Sbjct: 259 LFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEELN 302
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 83/219 (37%), Gaps = 60/219 (27%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ NL +T ++F + G V S+ I D+ T +SRGFGF+ + E A +A+
Sbjct: 242 IYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEEL 301
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ +I G+ + V R ++ +L+ SY+ Y G NL +
Sbjct: 302 NSREIHGQELYVG-----RAQKKHEREEELRKSYEAARQEKASKYVGVNLYIKNLDDEVD 356
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYT----------------------------------- 253
+ LR+ F + SAKV+ E +
Sbjct: 357 DEKLRELFAPYGPITSAKVMRETASESDEEGKETKETEEVKEVKEEEEKPKVEGAAEGEA 416
Query: 254 --------------GRSRGFGFVTFETAEDLQSALDAMN 278
G+S+GFGFV F +D A+ MN
Sbjct: 417 DASGEKQAAARPKLGKSKGFGFVCFSNPDDATKAVTEMN 455
>gi|380091978|emb|CCC10246.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 456
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 3/173 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
+D+ + L+VGNL + + + L F E SA +V DR + RSRGFG+V + ++A+
Sbjct: 163 ADDKSTLWVGNLGWGIDDAILFAEFEECEGAKSARVVTDRESGRSRGFGYVDFENNDQAQ 222
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK--IYAGNLGWG 226
+A G + GR ++++F G + A + + G SP ++ GN+ +
Sbjct: 223 KAYDAKSGGLLEGREMRLDFASKDAGNKPQAKAAD-RAAKHGDTISPESDTLFVGNMPFT 281
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ D F + S ++ ++ +GR +GF +VTF + ED ++A D +NG
Sbjct: 282 ADESAVSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSIEDAKNAFDQLNG 334
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 60/102 (58%), Gaps = 12/102 (11%)
Query: 103 EPKVAASDEAAR-----------LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
+P+ A+D AA+ L+VGN+P++ S++++ F +VAS I D+ +
Sbjct: 250 KPQAKAADRAAKHGDTISPESDTLFVGNMPFTADESAVSDFFNSVASVASLRIPTDQESG 309
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193
R +GF +VT S+E+AK A +GS + GR V++++ + PR
Sbjct: 310 RPKGFAYVTFNSIEDAKNAFDQLNGSDLQGRPVRLDYAK-PR 350
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 16/174 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A+ +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + +
Sbjct: 56 AAQHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 115
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ A+ + + I GR ++ + + P L+ + QG ++ NL +
Sbjct: 116 ERALEDLNYTSIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDAAI 160
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
++ L D F +LS KV + G S+G+GFV +ETAE A+ ++NG++
Sbjct: 161 DNKALHDTFSQFGNILSCKVAQDEL-GNSKGYGFVHYETAEAANQAIKSVNGML 213
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + F++ G + S ++ D + + S+G+GFV + E A +AI+
Sbjct: 151 VFIKNLDAAIDNKALHDTFSQFGNILSCKVAQDELGN-SKGYGFVHYETAEAANQAIKSV 209
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V R +R + KL+ F + +Y N+ ++ +
Sbjct: 210 NGMLLNDKKVFVGHHIAKR--DRQS---KLEEMKANFTN----VYIKNIDESVSDEEFTK 260
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ ++SA + + G+SRGFGFV F + E A++ +N
Sbjct: 261 LFEPYGEVVSATITRDE-NGKSRGFGFVNFASHESAAKAVEELN 303
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ S++ ++F G V SA I D +SRGFGFV S E A +A+
Sbjct: 244 VYIKNIDESVSDEEFTKLFEPYGEVVSATITRDE-NGKSRGFGFVNFASHESAAKAVEEL 302
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ + G+ + V E+ R E A M + + YQG +Y NL
Sbjct: 303 NDKEFHGKKLYVGRAQKKHEREEELRRQYEAARM--EKASKYQGV-----NLYVKNLTDD 355
Query: 227 LTSQGLRDAFQGQPGLLSAKVI 248
+ LR+ F + SAKV+
Sbjct: 356 VDDDKLRELFSSYGTITSAKVM 377
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F++ G S ++ D + +S+GFGFV+ E+
Sbjct: 185 ARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERA--------AMGPKLQNSYQGFVDSPHKI 218
A++A+ +G ++ GR V V + GER M YQG +
Sbjct: 244 AQKAVDEMNGKELNGRQVYVG--RAQKKGERQNELKRKFEQMKQDRMTRYQGV-----NL 296
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL GL + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MN
Sbjct: 297 YVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 279 GVV 281
G +
Sbjct: 355 GRI 357
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I GR +++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGRPLRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGML 162
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAREFTN----VYIKNFGEDMDDEKLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS +V+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFSKYGPALSIRVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|241947949|ref|XP_002416697.1| pre-rRNA processing and ribosome biogenesis, nuclear localization
sequence binding, nucleolar protein, putative [Candida
dubliniensis CD36]
gi|223640035|emb|CAX44279.1| pre-rRNA processing and ribosome biogenesis, nuclear localization
sequence binding, nucleolar protein, putative [Candida
dubliniensis CD36]
Length = 423
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 97/194 (50%), Gaps = 9/194 (4%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
EE +EE + ++ A ++E A L+VG L +++ S L F G V SA ++ +R
Sbjct: 173 EESKEEVSTPVKKSKPAAVNEEPATLFVGRLSWNIDDSWLKREFEHIGGVISARVIMERA 232
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQ 205
T +SRG+G+V + A++A+ G +I GR + ++ P R A +
Sbjct: 233 TGKSRGYGYVDFETKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASRSTNDRAK--QYG 290
Query: 206 NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
+S D+ ++ GNL + L F ++S +V T + +GFG+V F
Sbjct: 291 DSQSALSDT---LFVGNLSFNANRDNLFTVFGEYGNVISCRVPTHPDTQQPKGFGYVQFS 347
Query: 266 TAEDLQSALDAMNG 279
+ ++ ++AL+A+NG
Sbjct: 348 SVDEAKAALEALNG 361
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VGNL ++ +L VF E G V S + T + +GFG+V SV+EAK A+
Sbjct: 300 LFVGNLSFNANRDNLFTVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 359
Query: 175 DGSQIGGRTVKVNFPEVPR 193
+G I GR +++F PR
Sbjct: 360 NGEYIEGRPCRLDF-STPR 377
>gi|413926094|gb|AFW66026.1| heterogeneous nuclear ribonucleoprotein A3 [Zea mays]
Length = 443
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 29/211 (13%)
Query: 79 EDSQDEPETEQEEEEEEE---------------AVEEEEEPKVAASDEAARLYVGNLPYS 123
ED+Q E EE +EEE AV E+ + A D +++VG + +
Sbjct: 65 EDNQHELNGYDEEVDEEEGHPGRRVGRDGGSGYAVAVGEDGRGAGGDSLGKIFVGGVAWE 124
Query: 124 MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183
T S ++ F + G + + I+ D+ T RGFGFVT + L D I GRT
Sbjct: 125 TTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKV--LEDDHVIDGRT 182
Query: 184 VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL 243
V+V VPR GPK + KI+ G L LT L+D F ++
Sbjct: 183 VEVKRT-VPREEMITKDGPKTR-----------KIFIGGLPPSLTEDELKDHFSSYGNVV 230
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+++ + TGRSRGFGF+TFE+ + ++ +
Sbjct: 231 EHQIMLDHSTGRSRGFGFITFESEDSVERVI 261
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++++G LP S+T L + F+ G V +I+ D T RSRGFGF+T S + + I
Sbjct: 204 KIFIGGLPPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFITFESEDSVERVISE 263
Query: 174 FDGSQIGGRTVKVNFPEVPRGG 195
+GG+ V++ E + G
Sbjct: 264 GRMRDLGGKQVEIKKAEPKKHG 285
>gi|225683278|gb|EEH21562.1| nuclear localization sequence-binding protein [Paracoccidioides
brasiliensis Pb03]
Length = 492
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
++++ + E+EE V ++ KV + E L++GNL +++ L F E G +A IV
Sbjct: 221 KSQKRKAEDEEEVVAPKKTKVEPT-EGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIV 279
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ 205
DR + RS+GFG+V + E+A +A +++ GR + V+F AA + Q
Sbjct: 280 TDRDSGRSKGFGYVEFTNAEDAVKAHAAKKDTELDGRKLNVDFANA---RSNAAPRDRAQ 336
Query: 206 NSYQGFVD--SPHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGF 261
+ Q F D SP ++ GN+ + + + F +L ++ + +GR +GFG+
Sbjct: 337 SRAQNFGDQRSPESDTLFIGNIAFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGY 396
Query: 262 VTFETAEDLQSALDAMNG 279
V F + ++ +SA +++NG
Sbjct: 397 VQFSSIDEARSAFESLNG 414
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L++GN+ +S + ++E FAE G++ + D + R +GFG+V S++EA+
Sbjct: 347 SPESDTLFIGNIAFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEAR 406
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
A +GS++ GR ++++F PR
Sbjct: 407 SAFESLNGSELAGRAMRLDF-STPR 430
>gi|336267120|ref|XP_003348326.1| hypothetical protein SMAC_02824 [Sordaria macrospora k-hell]
Length = 377
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 3/173 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
+D+ + L+VGNL + + + L F E SA +V DR + RSRGFG+V + ++A+
Sbjct: 163 ADDKSTLWVGNLGWGIDDAILFAEFEECEGAKSARVVTDRESGRSRGFGYVDFENNDQAQ 222
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK--IYAGNLGWG 226
+A G + GR ++++F G + A + + G SP ++ GN+ +
Sbjct: 223 KAYDAKSGGLLEGREMRLDFASKDAGNKPQAKAAD-RAAKHGDTISPESDTLFVGNMPFT 281
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ D F + S ++ ++ +GR +GF +VTF + ED ++A D +NG
Sbjct: 282 ADESAVSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSIEDAKNAFDQLNG 334
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 60/102 (58%), Gaps = 12/102 (11%)
Query: 103 EPKVAASDEAAR-----------LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
+P+ A+D AA+ L+VGN+P++ S++++ F +VAS I D+ +
Sbjct: 250 KPQAKAADRAAKHGDTISPESDTLFVGNMPFTADESAVSDFFNSVASVASLRIPTDQESG 309
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193
R +GF +VT S+E+AK A +GS + GR V++++ + PR
Sbjct: 310 RPKGFAYVTFNSIEDAKNAFDQLNGSDLQGRPVRLDYAK-PR 350
>gi|338762832|gb|AEI98619.1| hypothetical protein 111O18.6 [Coffea canephora]
Length = 368
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 94/174 (54%), Gaps = 17/174 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A ++ A YVGNL ++ L E+F +AG V + + DRVT+ +G+GFV S E+
Sbjct: 19 AERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNSHQGYGFVEFRSEED 78
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A AI++ + ++ G+ ++VN +A+ K VD ++ GNL
Sbjct: 79 ADYAIKVLNMIKLYGKPIRVN---------KASQDKKS-------VDVGANLFIGNLDPD 122
Query: 227 LTSQGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +++ K++ + TG SRGFGF+++++ E +A++AMNG
Sbjct: 123 VDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNG 176
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L++GNL + L + F+ G V + +I+ D T SRGFGF++ S E +
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASD 168
Query: 169 EAIRLFDGSQIGGRTVKVNFP-EVPRGGER---------AAMGPKLQNSYQGFVDSPHKI 218
AI +G + R + V++ + GER AA P +Q S PH +
Sbjct: 169 AAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPNVQKS------RPHTM 222
Query: 219 YA 220
+A
Sbjct: 223 FA 224
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 16/185 (8%)
Query: 97 AVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF 156
AVE A +A LYVG L S+T + L E+F+ G VAS + D VT RS G+
Sbjct: 36 AVENSTPASAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGY 95
Query: 157 GFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
+V + + + A+ + + I G+ ++ + + P L+ + QG
Sbjct: 96 AYVNYNNTADGERALEDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG------ 140
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
++ NL + ++ L D F +LS KV + + G S+G+GFV +ETAE +A+
Sbjct: 141 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKH 199
Query: 277 MNGVV 281
+NG++
Sbjct: 200 VNGML 204
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 142 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 200
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + +Y NL + R
Sbjct: 201 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----VYIKNLDSEIDDDEFRK 251
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T E Q+A++ MN
Sbjct: 252 MFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 294
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ NL + ++F + G + SA + D+ +SRGFGFV + E A+ A+
Sbjct: 235 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHESAQAAVEEM 293
Query: 175 DGSQIGGRTVKVNFPEVPRGGER--------AAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ +I R+ K+ + ER A + + YQG +Y NL
Sbjct: 294 NDKEI--RSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV-----NLYVKNLTDD 346
Query: 227 LTSQGLRDAFQGQPGLLSAKVI 248
+ + LR+ F + SAKV+
Sbjct: 347 IDDEKLRELFGPYGTITSAKVM 368
>gi|357460829|ref|XP_003600696.1| Splicing factor 3B subunit [Medicago truncatula]
gi|355489744|gb|AES70947.1| Splicing factor 3B subunit [Medicago truncatula]
Length = 379
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 19/175 (10%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A ++ A YVGNL ++ L E+F +AG V + + DRVT++ +G+GFV S E+
Sbjct: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A AI++ + ++ G+ ++VN +A+ K +D ++ GNL
Sbjct: 79 ADYAIKVLNMIKLYGKPIRVN---------KASQDKKS-------LDVGANLFIGNLDPD 122
Query: 227 LTSQGLRDAFQGQPGLL--SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F G++ + K++ + TG SRGFGF+++++ E SA++AMNG
Sbjct: 123 VDEKLLYDTFSAF-GVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNG 176
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L++GNL + L + F+ G V + +I+ D T SRGFGF++ S E +
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 168
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI +G + R + V++
Sbjct: 169 SAIEAMNGQYLCNRQITVSY 188
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 20/191 (10%)
Query: 95 EEAVEEEEEPKVAASDEA----ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
E A + E P AA A A LYVG L S+T + L E+F+ G VAS + D VT
Sbjct: 32 EGAADGNETPNSAAPTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVT 91
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQG 210
RS G+ +V + + + A+ + + I G+ ++ + + P L+ + QG
Sbjct: 92 RRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQ---------RDPALRKTGQG 142
Query: 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
++ NL + ++ L D F +LS KV + + G S+G+GFV +ETAE
Sbjct: 143 ------NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAA 195
Query: 271 QSALDAMNGVV 281
+A+ +NG++
Sbjct: 196 TNAIKHVNGML 206
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAATNAIKHV 202
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + +Y NL +T++ R+
Sbjct: 203 NGMLLNEKKVFV--------GHHIAKKDR-QSKFEEMKANFTNVYVKNLEPEVTNEEFRE 253
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + TG+SRGFGFV F + +A++ +N
Sbjct: 254 LFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLN 297
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL +T+ E+F + G + SA + D T +SRGFGFV + + A A+
Sbjct: 237 VYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDL 296
Query: 175 DGSQIGGRTVKVNFPEVP-------RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ + G+ + V + R AA K + YQG +Y NL +
Sbjct: 297 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKA-SKYQGV-----NLYVKNLTDDI 350
Query: 228 TSQGLRDAFQGQPGLLSAKVI 248
+ LRD F G + SA+V+
Sbjct: 351 DDEKLRDLFIGFGNITSARVM 371
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 17/188 (9%)
Query: 94 EEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
E AVE P A+ +A LYVG L S+T + L E+F+ G VAS + D VT RS
Sbjct: 31 EVTAVESTTAPN-ASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRS 89
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD 213
G+ +V + + + A+ + + I G+ ++ + + P L+ + QG
Sbjct: 90 LGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG--- 137
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
++ NL + ++ L D F +LS KV + + G S+G+GFV +ETAE +A
Sbjct: 138 ---NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNA 193
Query: 274 LDAMNGVV 281
+ +NG++
Sbjct: 194 IKHVNGML 201
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 197
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + +Y N+ +T + R+
Sbjct: 198 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----VYIKNIDQDVTEEEFRE 248
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T E Q+A+D MN
Sbjct: 249 LFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMN 291
>gi|195432797|ref|XP_002064403.1| GK19717 [Drosophila willistoni]
gi|194160488|gb|EDW75389.1| GK19717 [Drosophila willistoni]
Length = 339
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +Y G L ++ + L E+F +AG V + + DRVT +G+GFV S E
Sbjct: 6 IAERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ ++VN +++Q +D I+ GNL
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN----------------KASAHQKNLDVGANIFIGNLDV 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG+S+GF F+ F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKLMRDPETGKSKGFAFINFASFEASDAAMDAMNG 164
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A +++GNL + L + F+ G + + +++ D T +S+GF F+ S E +
Sbjct: 97 DVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKLMRDPETGKSKGFAFINFASFEASD 156
Query: 169 EAIRLFDGSQIGGRTVKVN--FPEVPRGGERAAMGPKL---QNSYQGFVDSPHKIYA 220
A+ +G + R + V+ F + +G + +L QN D PH+++A
Sbjct: 157 AAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNP-SAHADRPHQLFA 212
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 16/166 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L S+T + L E F+ G V S + D +T RS G+ +V S +A AI +
Sbjct: 39 LYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSPNDAAHAIDVL 98
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ I G+ ++V + + R+ +G I+ NL + ++ L D
Sbjct: 99 NFQVINGKPIRVLYSQRDPAVRRSGVG---------------NIFIKNLDKAIDNKALLD 143
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F + SAKV + G S+G+GFV FET E Q+A+D +NG+
Sbjct: 144 TFAQFGTITSAKVAMDG-QGNSKGYGFVQFETQEAAQAAIDNVNGM 188
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 14/165 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA+ GT+ SA++ D + S+G+GFV + E A+ AI
Sbjct: 127 IFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDGQGN-SKGYGFVQFETQEAAQAAIDNV 185
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G ++ + V V R ER+ G N+ +Y NL L+ + LR+
Sbjct: 186 NGMELNDKQVYVG--PFQRRAERSNTGEAKFNN----------VYVKNLSENLSDEKLRE 233
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + G +++ VI G+S+GFGFV +E E +A++ ++G
Sbjct: 234 KF-AEHGAVTSCVIMRDEEGKSKGFGFVCYEEPEGAAAAVEKLDG 277
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 7/168 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL +++ L E FAE G V S I+ D +S+GFGFV E A A+
Sbjct: 217 VYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDE-EGKSKGFGFVCYEEPEGAAAAVEKL 275
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVD--SPHKIYAGNLGWGLTSQG 231
DG +T V + + ER A + K + ++ + +Y NL G +
Sbjct: 276 DGYTEDEKTWVVCRAQ--KKAEREAELKAKFDQERRERMEKMAGANLYIKNLEDGTDDEK 333
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR+ F+ + G +++ + +G SRG FV F + ++ A+ MNG
Sbjct: 334 LRELFK-EFGTITSCRVMRDASGVSRGSAFVAFSSPDEATRAVTEMNG 380
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 72 FDGFQVTEDSQD----EPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSS 127
DG+ TED + + + E E E +A ++E + A LY+ NL
Sbjct: 275 LDGY--TEDEKTWVVCRAQKKAEREAELKAKFDQERRERMEKMAGANLYIKNLEDGTDDE 332
Query: 128 SLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
L E+F E GT+ S ++ D + SRG FV S +EA A+ +G +G + + V
Sbjct: 333 KLRELFKEFGTITSCRVMRD-ASGVSRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYV 390
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 26/188 (13%)
Query: 104 PKVAASDEA----------ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
P A SD A A LYVG L S+T + L E+F+ G VAS + D VT RS
Sbjct: 31 PDTATSDAATTPNPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRS 90
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD 213
G+ +V + + + A+ + + I GR ++ + + P L+ + QG
Sbjct: 91 LGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQ---------RDPALRKTGQG--- 138
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
++ NL + ++ L D F +LS KV + + G S+G+GFV +ETAE +A
Sbjct: 139 ---NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNA 194
Query: 274 LDAMNGVV 281
+ +NG++
Sbjct: 195 IKHVNGML 202
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 140 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 198
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G + + Q+ ++ + +Y N+ +T + R+
Sbjct: 199 NGMLLNDKKVFV--------GHHISKKDR-QSKFEEMKANFTNVYVKNIDPEVTDEEFRE 249
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F G+ G +++ I +G+SRGFGFV + ++ QSA+D +N
Sbjct: 250 LF-GKYGDITSATISRDDSGKSRGFGFVNYVDHQNAQSAVDELN 292
>gi|189219581|ref|YP_001940222.1| RNA-binding protein, RRM domain [Methylacidiphilum infernorum V4]
gi|189186439|gb|ACD83624.1| RNA-binding protein, RRM domain [Methylacidiphilum infernorum V4]
Length = 117
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 66/100 (66%), Gaps = 3/100 (3%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAA---RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
E++E E E + +P + ++A +LYVGNLPY++T S L E+FA+ G + + EIV
Sbjct: 5 EQKEPTEHKELQSQPSSLSIEQAVTSNKLYVGNLPYNLTDSDLFEIFAKIGPIKNVEIVR 64
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
DR ++R++GFGFV M ++ A++A + +G +I GR + V
Sbjct: 65 DRKSNRTKGFGFVEMADLDSARKAATVLNGIEIMGRRIIV 104
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
+ +K+Y GNL + LT L + F + + +++ +R + R++GFGFV + + A
Sbjct: 29 TSNKLYVGNLPYNLTDSDLFEIFAKIGPIKNVEIVRDRKSNRTKGFGFVEMADLDSARKA 88
Query: 274 LDAMNGV 280
+NG+
Sbjct: 89 ATVLNGI 95
>gi|242073268|ref|XP_002446570.1| hypothetical protein SORBIDRAFT_06g018280 [Sorghum bicolor]
gi|241937753|gb|EES10898.1| hypothetical protein SORBIDRAFT_06g018280 [Sorghum bicolor]
Length = 423
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+E ++VG+L Y M + L F +G V + +++ +R T +S G+GFV S A
Sbjct: 96 GCEENKTIWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASA 155
Query: 168 KEAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
++A++ F G + R K+N+ G +R+ V S H I+ G+L
Sbjct: 156 EKALQNFTGHVMPNTDRAFKLNWASYSMGEKRSE------------VASDHSIFVGDLAA 203
Query: 226 GLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T + L + F + + AKVI + TGRSRG+GFV F D A+ MNGV
Sbjct: 204 DVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMSEMNGV 259
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 14/197 (7%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFA-EAGTVASAE 143
P T++ + + E+ ASD + ++VG+L +T L E+F+ + +V A+
Sbjct: 168 PNTDRAFKLNWASYSMGEKRSEVASDHS--IFVGDLAADVTDEMLLELFSSKYRSVKGAK 225
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
++ D T RSRG+GFV G + A+ +G R +++ P PR +
Sbjct: 226 VIIDANTGRSRGYGFVRFGDDNDKSHAMSEMNGVYCSTRPIRIG-PATPRRSSGDSGSST 284
Query: 204 LQNSYQGFVDSPHK-IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFV 262
+S DS ++ +Y G L ++ LR AF L S K+ + GFV
Sbjct: 285 PGHSDG---DSSNRTVYVGGLDPNVSEDELRKAFAKYGDLASVKIPLGKQC------GFV 335
Query: 263 TFETAEDLQSALDAMNG 279
F + D + AL +NG
Sbjct: 336 QFASRTDAEEALQGLNG 352
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 104 PKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
P + D + R +YVG L +++ L + FA+ G +AS +I + GFV
Sbjct: 285 PGHSDGDSSNRTVYVGGLDPNVSEDELRKAFAKYGDLASVKIPLGKQC------GFVQFA 338
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE-RAAMGPKLQNSYQG 210
S +A+EA++ +GS IG + V++++ P + R G + N Y G
Sbjct: 339 SRTDAEEALQGLNGSLIGKQAVRLSWGRSPSHKQSRGDSGNRRNNMYYG 387
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 18/205 (8%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
+T+ + ++ E + EE+ E E PKV S A LYVG L +++ + L ++F+
Sbjct: 4 ITDKTAEQLEQLKIEEQTAPTTTESETPKVETS--GASLYVGELEPTVSEALLYDIFSPI 61
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
G+V+S + D +T+ S G+ +V E +AI + + I G+ ++ +
Sbjct: 62 GSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMW-------- 113
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
+ P L+ G IY NL + ++ L + F +LS KV + G S
Sbjct: 114 -SQRDPSLRKKGSG------NIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDE-NGVS 165
Query: 257 RGFGFVTFETAEDLQSALDAMNGVV 281
RGFGFV FE D + A++A++G++
Sbjct: 166 RGFGFVHFENESDARDAIEAVDGML 190
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 11/167 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +Y+ NL ++ + SL E F+ G + S ++ D SRGFGFV + +A++AI
Sbjct: 125 SGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDE-NGVSRGFGFVHFENESDARDAI 183
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
DG + + V V V + ++ KL+ F + +Y N+ + +
Sbjct: 184 EAVDGMLMNDQEVYVAL-HVSKKDRQS----KLEEVKAKFTN----VYVKNIDQETSQEE 234
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ F G+ G +++ V+ + G+ RGFGFV FE A+D +N
Sbjct: 235 FEELF-GKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELN 280
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ + E+F + G + SA + D + RGFGFV A +A+
Sbjct: 221 VYVKNIDQETSQEEFEELFGKYGKITSAVLEKDS-EGKLRGFGFVNFEDHAAAAKAVDEL 279
Query: 175 DGSQIGGRTVKV--------NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ + G+ + V E+ + E A + KL YQG ++ NL
Sbjct: 280 NELEFKGQKLYVGRAQKKYERLQELKKQYEAARL-EKLA-KYQGV-----NLFVKNLDDS 332
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + L++ F + SAKV+ + TG SRGFGFV F T E+ A+ N
Sbjct: 333 IDDEKLKEEFAPFGTITSAKVMRDE-TGNSRGFGFVCFSTPEEATKAITEKN 383
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E QE +++ EA E+ A + L+V NL S+ L E FA GT+
Sbjct: 294 AQKKYERLQELKKQYEAARLEK----LAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTIT 349
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
SA+++ D T SRGFGFV + EEA +AI + + G+ + V
Sbjct: 350 SAKVMRDE-TGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
>gi|356538950|ref|XP_003537963.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Glycine max]
Length = 392
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 21/176 (11%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A +E L++G+L Y + S L++ FA G V S +I+ +++T + G+GFV S A
Sbjct: 5 AIEEVRTLWIGDLQYWVDESYLSQCFAHNGEVVSIKIIRNKLTGQPEGYGFVEFVSHASA 64
Query: 168 KEAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ +R ++G+Q+ G +T ++N+ G H I+ G+L
Sbjct: 65 EAFLRTYNGAQMPGTEQTFRLNWASFGDSGPD------------------HSIFVGDLAP 106
Query: 226 GLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T L++ F+ P + AKV+ + TGRS+G+GFV F A+ MNGV
Sbjct: 107 DVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFADEAQRNRAMTEMNGV 162
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 42/192 (21%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V D T RS+G+GFV + A+
Sbjct: 99 IFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFADEAQRNRAMTE 158
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY-------------- 219
+G R +++ +A PK S+Q P +Y
Sbjct: 159 MNGVYCSTRPMRI-----------SAATPKKNASFQHQYAPPKAMYQFPAYSAPVSAVAP 207
Query: 220 ----------AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
GNL +T + L+ F ++ K+ Y G +G+G+V F T
Sbjct: 208 ENDVNNTTVCIGNLDLNVTEEELKQTFMQFGDIVLVKI----YAG--KGYGYVQFGTRVS 261
Query: 270 LQSALDAMNGVV 281
+ A+ M G V
Sbjct: 262 AEDAIQRMQGKV 273
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 117 VGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
+GNL ++T L + F + G + +I +G+G+V G+ A++AI+ G
Sbjct: 218 IGNLDLNVTEEELKQTFMQFGDIVLVKIY------AGKGYGYVQFGTRVSAEDAIQRMQG 271
Query: 177 SQIGGRTVKVNFPEVPRGGERAA--MGPKLQNSYQGF 211
IG + +++++ G A M P ++Y G+
Sbjct: 272 KVIGQQVIQISW-----GSSMTARQMDPSQWSAYYGY 303
>gi|345569038|gb|EGX51907.1| hypothetical protein AOL_s00043g641 [Arthrobotrys oligospora ATCC
24927]
Length = 512
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 102/200 (51%), Gaps = 11/200 (5%)
Query: 84 EPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
EP+ +++ EEE A ++ + S+E+ L+VG L +++ L F + TV +A
Sbjct: 225 EPK-KRKAEEEAPAFSKKAKANEDGSEESKTLFVGQLSWNVDEDWLRREFEDVATVENAR 283
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
+V+D +RS+G G+V + +A++A+ G++I GR + ++F + +
Sbjct: 284 VVWDNQRNRSKGIGYVDFATRADAEKALAEKQGAEIDGRPINLDFTTARQNNNNS----- 338
Query: 204 LQNSYQGFVDS----PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF 259
Q+ + F DS ++ GNL + + L A + S ++ ++ TG +GF
Sbjct: 339 -QDRARKFGDSESPPSDTLFVGNLSFNADEEALGAAMSEHGEVTSVRIPTDKDTGNKKGF 397
Query: 260 GFVTFETAEDLQSALDAMNG 279
+VTF T ++ + A AMNG
Sbjct: 398 AYVTFSTIDEAKKAHAAMNG 417
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VGNL ++ +L +E G V S I D+ T +GF +VT +++EAK+A
Sbjct: 356 LFVGNLSFNADEEALGAAMSEHGEVTSVRIPTDKDTGNKKGFAYVTFSTIDEAKKAHAAM 415
Query: 175 DGSQIGGRTVKVNFPEVPR 193
+G Q+ GR+++ ++ + PR
Sbjct: 416 NGQQVCGRSIRTDYSQ-PR 433
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 15/175 (8%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
+A+ +A LY+G+L + L E+F G VAS + D VT RS G+ +V V +
Sbjct: 3 SANFSSASLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVAD 62
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + ++I G+ ++ + + R+ +G I+ NL G
Sbjct: 63 AERALDSMNFTEIKGKPCRIMWSQRDPSMRRSGVG---------------NIFVKNLHEG 107
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ ++ TG S+G+G+V +ET E SA++ ++G++
Sbjct: 108 IDNKQLYDTFSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGML 162
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 16/180 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL- 173
+++ N+P+ T L E F G V SA+ + S GFGFV + E A A++
Sbjct: 188 VFIKNIPFEWTEDKLREEFEGFGEVVSAK---PKEVQGSLGFGFVNFATHEAAAAAVKEM 244
Query: 174 ----FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQG-FVDSPHK-----IYAGNL 223
F ++ G KV F V R ++A +L+ Y+ +D K +Y NL
Sbjct: 245 NDKEFTVTEDGEEVTKVLF--VGRAQKKAERERELRAKYEAEKIDRIAKFQGVNLYVKNL 302
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVRL 283
+T LRD F + SA+V+ + TG SRGFGFV + T ED A++ MNG + L
Sbjct: 303 DDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEMNGKIIL 362
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 75 FQVTEDSQD--------EPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTS 126
F VTED ++ + + E E E A E E+ A + LYV NL ++T
Sbjct: 249 FTVTEDGEEVTKVLFVGRAQKKAERERELRAKYEAEKIDRIAKFQGVNLYVKNLDDTVTD 308
Query: 127 SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
L + F+ GT+ SA ++ D T SRGFGFV + E+A A+ +G I G+ + V
Sbjct: 309 DVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEMNGKIILGKPIFV 368
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 17/164 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + + L + F+ G + S ++V D+ T S+G+G+V + E A AI
Sbjct: 99 IFVKNLHEGIDNKQLYDTFSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKL 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
DG I G+ V+V +++ G D + ++ N+ + T LR+
Sbjct: 159 DGMLIDGKEVQVGV-------------FMRRDNRPGQADWTN-VFIKNIPFEWTEDKLRE 204
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+G ++SAK + S GFGFV F T E +A+ MN
Sbjct: 205 EFEGFGEVVSAK---PKEVQGSLGFGFVNFATHEAAAAAVKEMN 245
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 24/171 (14%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T S L ++F + G V S + D T RS G+G+V G+ ++A A+ +
Sbjct: 34 LYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARALDML 93
Query: 175 DGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + G+ +++ + P + R G I+ NL + ++
Sbjct: 94 NFTPLNGKPIRIMYSFRDPSIRRSGT-------------------ANIFIKNLDKAIDNK 134
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS K+ + +G+S+G+GFV F+ E ++A D +NG++
Sbjct: 135 ALYDTFSTFGAILSCKIATDA-SGQSKGYGFVQFDNEESAKNATDKLNGML 184
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 13/167 (7%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +++ NL ++ + +L + F+ G + S +I D + +S+G+GFV + E AK A
Sbjct: 120 ANIFIKNLDKAIDNKALYDTFSTFGAILSCKIATD-ASGQSKGYGFVQFDNEESAKNATD 178
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + + V V P V R ER + K + + +Y NL T + L
Sbjct: 179 KLNGMLLNDKQVYVG-PFV-RKQERESATNKTKF---------NNVYVKNLLESTTDEDL 227
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ F G+ G +++ V+ + G+S+ FGFV FE A+D +++A+NG
Sbjct: 228 KNIF-GEYGPITSAVVMQDGDGKSKCFGFVNFENADDAARSVEALNG 273
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 13/188 (6%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
V ++E + +YV NL S T L +F E G + SA ++ D +S+ FG
Sbjct: 196 VRKQERESATNKTKFNNVYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDG-DGKSKCFG 254
Query: 158 FVTMGSVEEAKEAIRLFDGSQIG------GRTVKVNFPEVPRGGERAAMGPKLQNSYQGF 211
FV + ++A ++ +G + G+ K EV G + + +QG
Sbjct: 255 FVNFENADDAARSVEALNGKKFDDKEWYVGKAQKKTEREVELKGRFEQSLKEAVDKFQGL 314
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
+Y NL + LR+ F + S KV+ + G SRG GFV F TAE+
Sbjct: 315 -----NLYVKNLDDSIADDKLRELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEAS 368
Query: 272 SALDAMNG 279
AL MNG
Sbjct: 369 RALADMNG 376
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL S+ L E+F+E GT+ S +++ D SRG GFV + EEA A+
Sbjct: 316 LYVKNLDDSIADDKLRELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASRALADM 374
Query: 175 DGSQIGGRTVKV 186
+G + + + V
Sbjct: 375 NGKMVASKPLYV 386
>gi|402593376|gb|EJW87303.1| hypothetical protein WUBG_01785 [Wuchereria bancrofti]
Length = 375
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 17/171 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
++ A +YVG L +T + L E+F +AG V S + DRVT +GFGF+ E+A
Sbjct: 10 NQDATIYVGGLDEKVTDAILWELFVQAGPVVSVNMPKDRVTSSHQGFGFIEFMGEEDADY 69
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI++ + ++ G+ +KVN ++++ +D ++ GNL +
Sbjct: 70 AIKIMNMIKLYGKPIKVN----------------KASAHEKNMDVGANVFVGNLDPEVDE 113
Query: 230 QGLRDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L D F +L K++ + TG S+GF FV F + E SA++AMNG
Sbjct: 114 KLLFDTFSAFGVILQVPKIMRDAETGNSKGFAFVNFASFEASDSAIEAMNG 164
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASA-EIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A ++VGNL + L + F+ G + +I+ D T S+GF FV S E +
Sbjct: 97 DVGANVFVGNLDPEVDEKLLFDTFSAFGVILQVPKIMRDAETGNSKGFAFVNFASFEASD 156
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI +G + R + V++
Sbjct: 157 SAIEAMNGQFLCNRAITVSY 176
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 16/176 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
V S A LYVG+L ++ S L + F++ T+AS I D + +S +G+V S
Sbjct: 3 VPPSATPASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPH 62
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI + + S + G+ ++V + ++ +G ++ NL
Sbjct: 63 DAIRAIEVKNHSTLNGKAIRVMWSRRDPDARKSCIG---------------NVFVKNLAE 107
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ + GL D F+ +LS+KV+ G+S+G+GFV FET E +A++ +NG +
Sbjct: 108 SIDNSGLEDMFKKFGNILSSKVVMSE-DGKSKGYGFVQFETEESANAAIERLNGYL 162
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 13/173 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ + L E F+ G + S + D S+GFGFV + E+AK A+
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKDS-NGMSKGFGFVNFDNPEDAKRAMETM 249
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY------QGFVDSPHKIYAGNLGWGLT 228
+G Q+G + + V R ++A L + Q IY N+ ++
Sbjct: 250 NGLQLGSKIL-----YVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVS 304
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+GLRD F + SAK++ + G S+GFGFV F T E+ A+++ +G +
Sbjct: 305 DEGLRDHFSVCGTITSAKIMRDD-KGISKGFGFVCFSTPEEANKAVNSFHGFM 356
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ +S L ++F + G + S+++V +S+G+GFV + E A AI
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSE-DGKSKGYGFVQFETEESANAAIERL 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +G + + V + + +R + GP + + +Y NL ++ LR+
Sbjct: 159 NGYLVGDKQIYVG--KFVKKSDRISSGPDTRYT---------NLYMKNLDLDISETLLRE 207
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F ++S V + G S+GFGFV F+ ED + A++ MNG+
Sbjct: 208 KFSSFGKIISLAVAKDS-NGMSKGFGFVNFDNPEDAKRAMETMNGL 252
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E EQ ++ E +E+ K S+ +YV N+ +++ L + F+ GT+
Sbjct: 264 AQKKAEREQILHQQFEEKRKEQVLKYKGSN----IYVKNIDDNVSDEGLRDHFSVCGTIT 319
Query: 141 SAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
SA+I+ D D+ S+GFGFV + EEA +A+ F G G+ + V+ +
Sbjct: 320 SAKIMRD---DKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQ 368
>gi|50409715|ref|XP_456900.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
gi|49652564|emb|CAG84877.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
Length = 447
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 9/179 (5%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
K ++E A L+VG L +S+ L F G V SA ++ +R T +SRG+G+V S
Sbjct: 190 KPKTNEEPATLFVGRLSWSIDDEWLRREFEPVGGVISARVIMERSTGKSRGYGYVDFDSK 249
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP----HKIYA 220
A++A++ + G ++ GR + ++ G+ A P + Q F D P ++
Sbjct: 250 SAAEKALQEYQGKELDGRPINLDM----STGKPHASNPNTDRAKQ-FGDVPSAPSDTLFV 304
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL + L + F ++S ++ T + +GFG+V F + ++ ++AL+A+NG
Sbjct: 305 GNLSFNAERDSLFNTFGEYGTVVSCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNG 363
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VGNL ++ SL F E GTV S I T + +GFG+V SV+EAK A+
Sbjct: 302 LFVGNLSFNAERDSLFNTFGEYGTVVSCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 361
Query: 175 DGSQIGGRTVKVNFPEVPRGGERA 198
+G + GR +++F PR A
Sbjct: 362 NGEYLDGRACRLDF-STPRDNSNA 384
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L ++T S L E+F G VAS + D VT RS G+ +V + + + A+
Sbjct: 41 SASLYVGELDPTVTESMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 100
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ S I R ++ + + P L+ + QG I+ NL + ++
Sbjct: 101 EQLNYSSIKNRPCRIMWSQ---------RDPALRKTGQG------NIFIKNLDEQIDNKA 145
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ETAE ++A+ ++NG++
Sbjct: 146 LHDTFAAFGNVLSCKVATDEH-GNSKGYGFVHYETAEAAENAIKSVNGML 194
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 85/164 (51%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + + +L + FA G V S ++ D + S+G+GFV + E A+ AI+
Sbjct: 132 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGN-SKGYGFVHYETAEAAENAIKSV 190
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V P + R ER + K+ F + +Y N+ +T + +
Sbjct: 191 NGMLLNDKKVYVG-PHISRK-ERQS---KIDEMRAHFTN----LYVKNIDPEVTDEEFEN 241
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ Q G + + ++ GR+ GFGFV FET E+ Q A+DA++
Sbjct: 242 LFK-QYGQVQSSLLKRDDQGRNLGFGFVNFETHEEAQKAVDALH 284
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N+ +T +F + G V S+ + D R+ GFGFV + EEA++A+
Sbjct: 225 LYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRDD-QGRNLGFGFVNFETHEEAQKAVDAL 283
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPK--------LQNSYQGFVDSPHKIYAGNLGWG 226
S GR K+ + ER A K N YQG +Y NL
Sbjct: 284 HESDFHGR--KLYVARAQKKAEREAELRKQYDQARQERMNKYQGV-----NLYIKNLEDD 336
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + LR F+ + S +V+ + G+S+GFGFV + ++ A+ MN
Sbjct: 337 VDDEKLRAEFEPFGTITSCRVMRDE-RGKSKGFGFVCYSAPDEATKAVAEMN 387
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E E E ++ + +E K + LY+ NL + L F GT+
Sbjct: 298 AQKKAEREAELRKQYDQARQERMNKY----QGVNLYIKNLEDDVDDEKLRAEFEPFGTIT 353
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
S ++ D +S+GFGFV + +EA +A+ + IG + + V+
Sbjct: 354 SCRVMRDE-RGKSKGFGFVCYSAPDEATKAVAEMNNKMIGSKPLYVSL 400
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++ S L ++F++ G V S + D T RS G+G+V + ++A A+ +
Sbjct: 32 LYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 91
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G+ +++ + + P ++ S G I+ NL G+ + L D
Sbjct: 92 NFTPLNGKPIRIMY---------SHRDPSIRKSGTG------NIFIKNLDKGIDHKALHD 136
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G S+G GFV F++ E Q A+D +NG++
Sbjct: 137 TFSAFGNILSCKVATDA-SGMSKGHGFVQFDSEEAAQKAIDKLNGML 182
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + +L + F+ G + S ++ D + S+G GFV S E A++AI
Sbjct: 120 IFIKNLDKGIDHKALHDTFSAFGNILSCKVATD-ASGMSKGHGFVQFDSEEAAQKAIDKL 178
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V P V R ER + K + + ++ N+ G+T + L
Sbjct: 179 NGMLLNDKQVFVG-PFV-RKQERESTINK---------EKFNNVFVKNISEGMTEEDLTR 227
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F G+ G +++ V+ G+S+ FGFV FE +D +++A+NG
Sbjct: 228 IF-GEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNG 271
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 7/184 (3%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
V ++E ++ ++V N+ MT L +F E G + S ++ D +S+ FG
Sbjct: 194 VRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDG-DGKSKCFG 252
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH 216
FV +V++A ++ +G + + V + + ER + + + + + VD
Sbjct: 253 FVNFENVDDAAMSVEALNGQKFDDKEWYVG--KAQKKSEREIELKSRFEQNMKEAVDKFQ 310
Query: 217 --KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+Y NL + L++ F Q G +++ + G SRG GFV F + E+ AL
Sbjct: 311 GANLYIKNLDDSIGDDKLKELF-AQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRAL 369
Query: 275 DAMN 278
MN
Sbjct: 370 AEMN 373
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+ + E E E ++ E+ + + A LY+ NL S+ L E+FA+ GT+ S +++
Sbjct: 285 QKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVM 344
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAI 171
D SRG GFV S EEA A+
Sbjct: 345 RDP-NGLSRGSGFVAFSSPEEASRAL 369
>gi|302038618|ref|YP_003798940.1| putative RNA-binding protein RbpA [Candidatus Nitrospira defluvii]
gi|300606682|emb|CBK43015.1| putative RNA-binding protein RbpA [Candidatus Nitrospira defluvii]
Length = 108
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 54/76 (71%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++YVG LPYS T L+++FA G V SA I+ D+ T +SRGFGFV M S +EA++AI
Sbjct: 2 GSKIYVGGLPYSATEQQLSDLFAVHGAVESARIITDKFTGQSRGFGFVEMASSDEAQKAI 61
Query: 172 RLFDGSQIGGRTVKVN 187
+G+ +GGRT+ VN
Sbjct: 62 SALNGTDMGGRTLTVN 77
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
KIY G L + T Q L D F + SA++I +++TG+SRGFGFV ++++ Q A+ A
Sbjct: 4 KIYVGGLPYSATEQQLSDLFAVHGAVESARIITDKFTGQSRGFGFVEMASSDEAQKAISA 63
Query: 277 MNGV 280
+NG
Sbjct: 64 LNGT 67
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++ + L E+F++ G V S + D +T RS G+ +V + ++A A+ L
Sbjct: 26 LYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDATRALELL 85
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G+ +++ F + P ++ S I+ NL + ++ L D
Sbjct: 86 NFTGVNGKPIRIMF---------SHRDPSIRKS------GTANIFIKNLDKSIDNKALHD 130
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+S+G+GFV FE E Q+A++ +NG++
Sbjct: 131 TFAAFGNILSCKVATDA-SGQSKGYGFVQFEQEESAQNAIEKVNGML 176
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +++ NL S+ + +L + FA G + S ++ D + +S+G+GFV E A+ AI
Sbjct: 112 ANIFIKNLDKSIDNKALHDTFAAFGNILSCKVATD-ASGQSKGYGFVQFEQEESAQNAIE 170
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + + V V P V R A G V + +Y NL T L
Sbjct: 171 KVNGMLLNDKQVFVG-PFVRRQERDQAGG----------VSKFNNVYVKNLADVTTDDEL 219
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F G G +S+ V+ G+S+ FGFV FE +D A++A+ G
Sbjct: 220 KKVF-GAWGPISSAVVMRDNDGKSKCFGFVNFEHPDDAAKAVEALQG 265
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 17/190 (8%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
V +E + + +YV NL T L +VF G ++SA ++ D +S+ FG
Sbjct: 188 VRRQERDQAGGVSKFNNVYVKNLADVTTDDELKKVFGAWGPISSAVVMRDN-DGKSKCFG 246
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQN-------SYQ 209
FV ++A +A+ G + + V + ER A + K + YQ
Sbjct: 247 FVNFEHPDDAAKAVEALQGKKFDEKEWYVG--RAQKKSEREAELRAKFEQERKERIEKYQ 304
Query: 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
G +Y NL + + +R+ F + S KV+ + + G+S+G GFV F + ++
Sbjct: 305 GV-----NLYLKNLDDTVDDEKIRELFAEYGTITSCKVMRD-HQGQSKGSGFVAFSSPDE 358
Query: 270 LQSALDAMNG 279
A+ MNG
Sbjct: 359 ATRAVTEMNG 368
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+ + E E E A E+E + + LY+ NL ++ + E+FAE GT+ S +++
Sbjct: 279 QKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKIRELFAEYGTITSCKVM 338
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D +S+G GFV S +EA A+ +G +G + + V
Sbjct: 339 RDH-QGQSKGSGFVAFSSPDEATRAVTEMNGKMVGNKPLYV 378
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 16/180 (8%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P + +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V
Sbjct: 31 EAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 90
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ A+ + + I G+ ++ + + P L+ + QG ++
Sbjct: 91 NDTAHGERALDELNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIK 135
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
NL + ++ L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 136 NLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGML 194
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A AI+
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHV 190
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + IY N+ + + R
Sbjct: 191 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----IYIKNIDPEVEDEEFRK 241
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T E Q+A++ MN
Sbjct: 242 LFE-KFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
>gi|401430030|ref|XP_003879497.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495747|emb|CBZ31053.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 564
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+P+V + A +YVG+L ++ L E+F GT+ + + D +T RS G+G+V
Sbjct: 14 HQPQVDKPMQIASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNF 73
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ E A++AI + ++G + V++ + + P L+ S G ++
Sbjct: 74 DNHESAEKAIESMNFKRVGDKCVRLMWQQ---------RDPALRYSGNG------NVFVK 118
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL + S+ L D F +LS KV+ + G+SRG+GFV F+ + A+ MNG
Sbjct: 119 NLEKDVDSKSLHDIFTKFGSILSCKVM-QDEEGKSRGYGFVHFKDETSAKDAIVKMNG 175
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ + +++ + + FA+ G + SA D+ R F F ++A +A+
Sbjct: 209 VYIKQVLPTVSKEVIEKFFAKFGGITSAAACKDK---SGRVFAFCNFEKHDDAVKAVEAM 265
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
I G T V R R+ L+ Y + +Y N T L +
Sbjct: 266 HDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLE 325
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F+ + S +V+ +G SRGFGFV+F A++ +AL MNG
Sbjct: 326 LFKEYGDVKSCRVMVSE-SGASRGFGFVSFSNADEANAALREMNG 369
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N T + L E+F E G V S ++ + SRGFGFV+ + +EA A+R
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGDVKSCRVMVSE-SGASRGFGFVSFSNADEANAALREM 367
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAM 200
+G + G+ + VN + R +R M
Sbjct: 368 NGRMLNGKPLIVNIAQ--RRDQRYTM 391
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 22/169 (13%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + S SL ++F + G++ S +++ D +SRG+GFV AK+AI
Sbjct: 115 VFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDE-EGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 175 DGSQIGGRTVK-----VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
+G+ K NF + R AA+ N +Y + ++
Sbjct: 174 NGAADHASEDKKALYVANF--IRRNARLAALVANFTN-----------VYIKQVLPTVSK 220
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + F G+ SA ++ R F F FE +D A++AM+
Sbjct: 221 EVIEKFFAKFGGITSAAACKDK---SGRVFAFCNFEKHDDAVKAVEAMH 266
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F++ G S ++ D + +S+GFGFV+ E+
Sbjct: 172 ARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDD-SGKSKGFGFVSFERHED 230
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERA--------AMGPKLQNSYQGFVDSPHKI 218
A++A+ +G ++ GR V V + GER M YQG +
Sbjct: 231 AQKAVDDMNGKELNGRQVYVG--RAQKKGERQNELKRKFEQMKQDRMTRYQGV-----NL 283
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL GL + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MN
Sbjct: 284 YVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 341
Query: 279 GVV 281
G +
Sbjct: 342 GRI 344
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 88 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 145
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 146 NGMLLNDRKVFVG-----RFKSRKEREAELGARAREFTN----VYIKNFGEDMDDEKLKE 196
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS +V+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 197 LFSKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQKAVDDMNG 240
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 17/149 (11%)
Query: 133 FAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192
F+ AG + S + D +T RS G+ +V +A+ A+ + I GR +++ + +
Sbjct: 18 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQ-- 75
Query: 193 RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY 252
P L+ S G I+ NL + ++ L D F +LS KV+ +
Sbjct: 76 -------RDPSLRKSGVG------NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE- 121
Query: 253 TGRSRGFGFVTFETAEDLQSALDAMNGVV 281
S+G+GFV FET E + A++ MNG++
Sbjct: 122 -NGSKGYGFVHFETHEAAERAIEKMNGML 149
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 279 QGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 336
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 337 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 369
>gi|168049769|ref|XP_001777334.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168061528|ref|XP_001782740.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665773|gb|EDQ52446.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671310|gb|EDQ57864.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 416
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 15/176 (8%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+ +E L+VG+L Y M + L F G V S +I+ ++ T S G+GFV S A
Sbjct: 3 SHEEVKTLWVGDLQYWMDENYLHTAFVHTGEVQSVKIIRNKQTGYSEGYGFVEFVSHAAA 62
Query: 168 KEAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
++ ++ ++G+Q+ + ++N+ G R GP+ H I+ G+L
Sbjct: 63 EKILQAYNGTQMPNTEQPFRLNWASFGIGERRPEAGPE------------HSIFVGDLAP 110
Query: 226 GLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T L++ F+ + P + AKV+ + TGRS+G+GFV F + A+ MNGV
Sbjct: 111 DVTDYMLQETFRTRYPSVKGAKVVTDANTGRSKGYGFVRFGDEMERNRAMSEMNGV 166
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 29/189 (15%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D T RS+G+GFV G E A+
Sbjct: 103 IFVGDLAPDVTDYMLQETFRTRYPSVKGAKVVTDANTGRSKGYGFVRFGDEMERNRAMSE 162
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKL----------------QNSYQGF-VDS-P 215
+G R ++++ + A + PK+ Q S Q F VD+ P
Sbjct: 163 MNGVYCSSRPMRISAATPKKSLGPAQLNPKVDAVSPVAVATYAAYGAQPSPQAFPVDNDP 222
Query: 216 HK--IYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+ I+ G L + + LR+ F GQ G L+ K+ +G GFV F +
Sbjct: 223 NNTTIFVGGLDPAVGDEDLRNVF-GQFGELVYVKIP------AGKGCGFVQFTHRACAEE 275
Query: 273 ALDAMNGVV 281
AL ++ V
Sbjct: 276 ALQRLHQTV 284
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 16/188 (8%)
Query: 94 EEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
E AVE A +A LYVG L S+T + L E+F+ G VAS + D VT RS
Sbjct: 35 EVTAVENSTPAPAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRS 94
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD 213
G+ +V + + + A+ + + I G+ ++ + + P L+ + QG
Sbjct: 95 LGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG--- 142
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
++ NL + ++ L D F +LS KV + + G S+G+GFV +ETAE +A
Sbjct: 143 ---NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNA 198
Query: 274 LDAMNGVV 281
+ +NG++
Sbjct: 199 IKHVNGML 206
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 202
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + +Y NL + R
Sbjct: 203 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----VYIKNLDSEIDDDEFRK 253
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T E Q+A++ MN
Sbjct: 254 MFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 296
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ NL + ++F + G + SA + D+ +SRGFGFV + E A+ A+
Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHESAQAAVEEM 295
Query: 175 DGSQIGGRTVKVNFPEVPRGGER--------AAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ +I R+ K+ + ER A + + YQG +Y NL
Sbjct: 296 NDKEI--RSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV-----NLYVKNLTDD 348
Query: 227 LTSQGLRDAFQGQPGLLSAKVI 248
+ + LR+ F + SAKV+
Sbjct: 349 IDDEKLRELFGPYGTITSAKVM 370
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
AAS A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 AASYPMASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I GR V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + LRD
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAREFTN----VYIKNFGDDMDEEKLRD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +S +V+ + +G+SRGFGFV+FE ED Q A+D MNG
Sbjct: 210 VFNKYGNAMSIRVMTDD-SGKSRGFGFVSFERHEDAQKAVDEMNG 253
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L +VF + G S ++ D + +SRGFGFV+ E+
Sbjct: 185 ARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDD-SGKSRGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA--------MGPKLQNSYQGFVDSPHKI 218
A++A+ +G ++ G+ + V + + ER A M YQG +
Sbjct: 244 AQKAVDEMNGKEMNGKPIYVGRAQ--KKVERQAELKRKFEQMKQDRMTRYQGV-----NL 296
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MN
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMLE--GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 279 GVV 281
G +
Sbjct: 355 GRI 357
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLE--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|9294614|dbj|BAB02953.1| DNA/RNA binding protein-like [Arabidopsis thaliana]
Length = 489
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
+ D+ L+VG+L + M + L F+ G V+S +++ +++T +S G+GFV S
Sbjct: 102 GSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAA 161
Query: 167 AKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPHKIYAGNL 223
A+E ++ + GS + + ++N+ G +RA GP L ++ G+L
Sbjct: 162 AEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDL------------SVFVGDL 209
Query: 224 GWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+T L + F + P + SAKV+ + TGRS+G+GFV F + AL MNG
Sbjct: 210 SPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNG 266
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F++ +V SA++V D T RS+G+GFV G E A+
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG-- 231
+G+ R ++V R A+ + Q+S Q + + G++G+G S G
Sbjct: 264 MNGAYCSNRQMRVGIATPKR-----AIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGES 318
Query: 232 ------------------LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
LR F ++S K+ +G GFV F + + A
Sbjct: 319 TNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFADRKSAEDA 372
Query: 274 LDAMNGVV 281
++++NG V
Sbjct: 373 IESLNGTV 380
>gi|312067511|ref|XP_003136777.1| spliceosomal protein on the X [Loa loa]
gi|307768054|gb|EFO27288.1| spliceosomal protein on the X [Loa loa]
Length = 375
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 17/171 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
++ A +YVG L +T + L E+F +AG V S + DRVT +GFGF+ E+A
Sbjct: 10 NQDATIYVGGLDEKVTDAILWELFVQAGPVVSVNMPKDRVTSSHQGFGFIEFMGEEDADY 69
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI++ + ++ G+ +KVN ++++ +D ++ GNL +
Sbjct: 70 AIKIMNMIKLYGKPIKVN----------------KASAHEKNMDVGANVFVGNLDPEVDE 113
Query: 230 QGLRDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L D F +L K++ + TG S+GF FV F + E SA++AMNG
Sbjct: 114 KLLFDTFSAFGVILQVPKIMRDAETGNSKGFAFVNFASFEASDSAIEAMNG 164
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASA-EIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A ++VGNL + L + F+ G + +I+ D T S+GF FV S E +
Sbjct: 97 DVGANVFVGNLDPEVDEKLLFDTFSAFGVILQVPKIMRDAETGNSKGFAFVNFASFEASD 156
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI +G + R + V++
Sbjct: 157 SAIEAMNGQFLCNRAITVSY 176
>gi|406959178|gb|EKD86596.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 81
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+LP+++ + LAE+FA+AG V SA++V DR T RSRGFGFV M + EEA+ A++
Sbjct: 1 MFVGSLPWAVDDAKLAELFAQAGNVVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNL 60
Query: 175 DGSQIGGRTVKVNFPEVPR 193
+G+ + GR + VN PR
Sbjct: 61 NGTDVEGRKIVVNIAR-PR 78
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
++ G+L W + L + F ++SA+V+ +R TGRSRGFGFV T E+ Q+A+ +
Sbjct: 1 MFVGSLPWAVDDAKLAELFAQAGNVVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNL 60
Query: 278 NG 279
NG
Sbjct: 61 NG 62
>gi|342884065|gb|EGU84408.1| hypothetical protein FOXB_05073 [Fusarium oxysporum Fo5176]
Length = 566
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 10/192 (5%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
++E E EE P++ + R ++V L + + L E F + G V A+IV DR+
Sbjct: 155 DDERRETKREEGNPQLTEDERDRRTVFVQQLAARLRTRELKEFFEKVGPVNEAQIVKDRI 214
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
+ RS+G G+V + E +A++L G ++ G V V E + R A P+ +
Sbjct: 215 SQRSKGVGYVEFKNEESVTQALQLT-GQKLLGIPVIVQVTEAEK--NRQARNPEASGPHP 271
Query: 210 GFVDSP-HKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETA 267
+ P H++Y GN+ + +T Q L+ F +P G L + + GRSRG+GFV F A
Sbjct: 272 NSI--PFHRLYVGNIHFNVTEQDLQAVF--EPFGELEFVQLQKDENGRSRGYGFVQFRDA 327
Query: 268 EDLQSALDAMNG 279
+ AL+ MNG
Sbjct: 328 GQAREALEKMNG 339
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGN+ +++T L VF G + ++ D RSRG+GFV +A+EA+
Sbjct: 278 RLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDE-NGRSRGYGFVQFRDAGQAREALEK 336
Query: 174 FDGSQIGGRTVKV 186
+G + GR ++V
Sbjct: 337 MNGFDLAGRPIRV 349
>gi|225430808|ref|XP_002271291.1| PREDICTED: splicing factor 3B subunit 4 [Vitis vinifera]
Length = 373
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 19/175 (10%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A ++ A YVGNL +T L E+F +AG V + + DRVT+ +G+GFV S E+
Sbjct: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A AI++ + ++ G+ ++VN +A+ K +D ++ GNL
Sbjct: 79 ADYAIKVLNMIKLYGKPIRVN---------KASQDKK-------SLDVGANLFVGNLDPD 122
Query: 227 LTSQGLRDAFQGQPGLL--SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F G++ + K++ + TG SRGFGFV++++ E +A++AMNG
Sbjct: 123 VDEKLLYDTFSAF-GVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNG 176
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L+VGNL + L + F+ G V + +I+ D T SRGFGFV+ S E +
Sbjct: 109 DVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASD 168
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI +G + R + V++
Sbjct: 169 AAIEAMNGQYLCNRQITVSY 188
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 17/185 (9%)
Query: 97 AVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF 156
AVE P A+ +A LYVG L S+T + L E+F+ G VAS + D VT RS G+
Sbjct: 34 AVESTTAPN-ASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGY 92
Query: 157 GFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
+V + + + A+ + + I G+ ++ + + P L+ + QG
Sbjct: 93 AYVNYNNTADGERALEDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG------ 137
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
++ NL + ++ L D F +LS KV + + G S+G+GFV +ETAE +A+
Sbjct: 138 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKH 196
Query: 277 MNGVV 281
+NG++
Sbjct: 197 VNGML 201
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 197
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + +Y N+ +T + R+
Sbjct: 198 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----VYIKNIDQDVTEEEFRE 248
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T E Q+A+D MN
Sbjct: 249 LFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMN 291
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 16/180 (8%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P + +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V
Sbjct: 31 EAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 90
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ A+ + + I G+ ++ + + P L+ + QG ++
Sbjct: 91 NDTAHGERALDELNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIK 135
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
NL + ++ L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 136 NLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGML 194
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A AI+
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHV 190
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + IY N+ + + R
Sbjct: 191 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----IYIKNIDPEVEDEEFRK 241
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T E Q+A++ MN
Sbjct: 242 LFE-KFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
>gi|160899081|ref|YP_001564663.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333914782|ref|YP_004488514.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|160364665|gb|ABX36278.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333744982|gb|AEF90159.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 115
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNLPYS+T SSL FAE G VASA+++ DR T RS+GFGFV M S E A+ AI
Sbjct: 4 KIYVGNLPYSVTDSSLESNFAEFGNVASAKVMMDRETGRSKGFGFVEMASAEVAQAAITG 63
Query: 174 FDGSQIGGRTVKVNFPEVPR 193
G + GR++ VN PR
Sbjct: 64 LHGMSVDGRSIVVNLAR-PR 82
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
KIY GNL + +T L F + SAKV+ +R TGRS+GFGFV +AE Q+A+
Sbjct: 4 KIYVGNLPYSVTDSSLESNFAEFGNVASAKVMMDRETGRSKGFGFVEMASAEVAQAAITG 63
Query: 277 MNGV 280
++G+
Sbjct: 64 LHGM 67
>gi|440791603|gb|ELR12841.1| splicing factor, CC1like subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 594
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 2/188 (1%)
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR 152
EE+E +++E + A DE ++ NLP + S L E F +AG V ++ DR + +
Sbjct: 150 EEQERRRKQKEAEEADRDERT-VFASNLPIRASESELFEFFGKAGKVHDIRLITDRNSRK 208
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFV 212
S+GFG++ A+ +G+Q G+TV V + + AA + +
Sbjct: 209 SKGFGYIEYLDKSSVPLALHQLNGTQCKGQTVLVQITQAEK-NRAAAAAAAAAANAPPSL 267
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+P ++Y GNL L LR F+ + + + TGRS+GF FV +++ ED +
Sbjct: 268 SAPTRLYVGNLHTDLAEDDLRTVFEPFGDIQQINLHIDPETGRSKGFAFVQYKSPEDAKK 327
Query: 273 ALDAMNGV 280
AL NG+
Sbjct: 328 ALQHCNGM 335
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNL + L VF G + + D T RS+GF FV S E+AK+A++
Sbjct: 272 RLYVGNLHTDLAEDDLRTVFEPFGDIQQINLHIDPETGRSKGFAFVQYKSPEDAKKALQH 331
Query: 174 FDGSQIGGRTVKVNFPEVP 192
+G ++ GR +KV P
Sbjct: 332 CNGMELAGRQLKVGIVSDP 350
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ S +L + F+ G + S ++ D SRGFGFV + E A++AI
Sbjct: 101 VFIKNLEDSIDSKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETNEAAQQAIGTM 158
Query: 175 DGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + R V V + R E A + N IY NL + QGL
Sbjct: 159 NGMLLNDRKVFVGHFKSQREREAELGAQALEFTN-----------IYVKNLSVDMDEQGL 207
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+D F +LS KV+ + +G SRGFGFV FE E+ Q A+D MNG
Sbjct: 208 QDLFFAFGNMLSVKVMRDN-SGHSRGFGFVNFEKHEEAQKAVDHMNG 253
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +T + L E F+ G + S + D T RS G+ ++ +A+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ I G+ +++ + + G ++ +G ++ NL + S+ L D
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVG---------------NVFIKNLEDSIDSKALYD 117
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + + SRGFGFV FET E Q A+ MNG++
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETNEAAQQAIGTMNGML 162
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +YV NL M L ++F G + S +++ D + SRGFGFV EEA++A
Sbjct: 189 EFTNIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDN-SGHSRGFGFVNFEKHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKL-----------QNSYQGFVDSPHKIY 219
+ +G ++ G+ + V R +RA +L Q Y+G +Y
Sbjct: 248 VDHMNGKEVSGQQLYVG-----RAQKRAERQNELKRRFEQLKQDRQTRYRGV-----NLY 297
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL ++ + LR F + SAKV+ E S+GFGFV F + E+ A+ MNG
Sbjct: 298 VKNLDDSISDEKLRTVFSPYGVITSAKVMTE--GDHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 280 VV 281
+
Sbjct: 356 CI 357
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q E + E + E ++++ + + LYV NL S++ L VF+ G +
Sbjct: 266 AQKRAERQNELKRRFEQLKQDRQTRY----RGVNLYVKNLDDSISDEKLRTVFSPYGVIT 321
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
SA+++ + D S+GFGFV S EEA +A+ +G +G + + V + R ER A+
Sbjct: 322 SAKVMTE--GDHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALAQ--RKEERKAI 377
Query: 201 GPKLQNSY 208
L N Y
Sbjct: 378 ---LTNQY 382
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 16/180 (8%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P + +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V
Sbjct: 31 EAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 90
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ A+ + + I G+ ++ + + P L+ + QG ++
Sbjct: 91 NDTAHGERALDELNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIK 135
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
NL + ++ L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 136 NLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGML 194
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A AI+
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHV 190
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + IY N+ + + R
Sbjct: 191 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----IYIKNIDPEVEDEEFRK 241
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T E Q+A++ MN
Sbjct: 242 LFE-KFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 16/174 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A+ +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V S +
Sbjct: 50 ANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADG 109
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ A+ + + I G+ ++ + + P L+ + QG ++ NL +
Sbjct: 110 ERALEELNYTLIKGKPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDAAI 154
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
++ L D F +LS KV + + G S+G+GFV +ET++ A+ ++NG++
Sbjct: 155 DNKALHDTFAAFGNILSCKVAVDEH-GNSKGYGFVHYETSDAANQAIKSVNGML 207
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + + A +AI+
Sbjct: 145 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAVDEHGN-SKGYGFVHYETSDAANQAIKSV 203
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ + K + F + IY N+ T R+
Sbjct: 204 NGMLLNEKKVFVGH-HIPKKDRMS----KFEEMKANFTN----IYVKNIDAETTDDEFRE 254
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + G+ RGFGFV F ED A+D +N
Sbjct: 255 LFEKYGQITSASLAHDD-QGKVRGFGFVNFIRHEDAAKAVDELN 297
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V SV + ++A+
Sbjct: 67 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKAL 126
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I G+ ++ + + P L+ + G I+ NL + ++
Sbjct: 127 EELNYTLIKGKPCRIMW---------SQRDPALRKTGHG------NIFIKNLDAAIDNKA 171
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + G S+G+GFV +ET E A+ +NG++
Sbjct: 172 LHDTFAAFGNILSCKVATDE-NGNSKGYGFVHYETDEAAAQAIKHVNGML 220
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A +AI+
Sbjct: 158 IFIKNLDAAIDNKALHDTFAAFGNILSCKVATDE-NGNSKGYGFVHYETDEAAAQAIKHV 216
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + +P+ +R + +++ +Y +Y N+ +T + R+
Sbjct: 217 NGMLLNEKKVYVGY-HIPKK-DRQSKFEEMKANYT-------NVYIKNINLEVTEEEFRE 267
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F G +++ + G+ RGFGFV + T ++ MNG
Sbjct: 268 FFSKW-GEITSSTLARDAEGKPRGFGFVNYSTHASAAKCVEEMNG 311
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 80/213 (37%), Gaps = 57/213 (26%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ +T E F++ G + S+ + D + RGFGFV + A + +
Sbjct: 251 VYIKNINLEVTEEEFREFFSKWGEITSSTLARD-AEGKPRGFGFVNYSTHASAAKCVEEM 309
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+G + G+ + V E+ + E A + + QN YQG +Y NL
Sbjct: 310 NGKEWRGQELYVGRAQKKHEREEELRKSYEAARL--EKQNKYQGV-----NLYIKNLSDE 362
Query: 227 LTSQGLRDAFQGQPGLLSAKVIF------------------------------------- 249
+ + LR F + SAKV+
Sbjct: 363 VDDEKLRAMFAEFGPITSAKVMRDTPPEPAKDEKNKENNKESEKEGEKKEGEGEGDKKPE 422
Query: 250 ----ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
ER G+S+GFGFV F +D A+ MN
Sbjct: 423 VKKPERKLGKSKGFGFVCFANPDDATKAVAEMN 455
>gi|162455692|ref|YP_001618059.1| RNA recognition motif-containing protein [Sorangium cellulosum So
ce56]
gi|161166274|emb|CAN97579.1| RNA-binding region RNP-1 (RNA recognition motif) [Sorangium
cellulosum So ce56]
Length = 139
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 54/74 (72%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP+S T +S+ FA++G V IV DR + +SRGFGFVTMG+ E+A++AI
Sbjct: 4 RLYVGNLPFSATKASVQAAFAQSGEVTDVHIVTDRESGQSRGFGFVTMGTPEQAQQAIEN 63
Query: 174 FDGSQIGGRTVKVN 187
+G+ + GR ++VN
Sbjct: 64 MNGAMMDGRPLRVN 77
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
++Y GNL + T ++ AF + ++ +R +G+SRGFGFVT T E Q A++
Sbjct: 4 RLYVGNLPFSATKASVQAAFAQSGEVTDVHIVTDRESGQSRGFGFVTMGTPEQAQQAIEN 63
Query: 277 MNGVV 281
MNG +
Sbjct: 64 MNGAM 68
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 17/168 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + DR T RS G+ V +E+A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + S+ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFVKNLDRSIDSKTL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
D F +LS KV+ + S+G+GFV FET E+ + A++ MNG+
Sbjct: 116 YDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMNGM 161
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 14/166 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ S +L + F+ G + S ++V D + S+G+GFV + EEA+ AI
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 175 DGSQIGGRTVKV-NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R +A +G + + F + +Y NLG + + L+
Sbjct: 159 NGMFLNDRKVFVGRFKS--RRDRQAELGARAKE----FTN----VYIKNLGEDMDDERLQ 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F LS KV+ + +G+S+GFGFV+FE ED + A+D MNG
Sbjct: 209 DLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMNG 253
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 24/191 (12%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ NL M L ++F+ G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPH--------- 216
A++A+ +G + G+ + V R ++ +L++ + Q D P
Sbjct: 244 ARKAVDEMNGKDLNGKQIYVG-----RAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRS 298
Query: 217 ------KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
+Y NL G+ + LR F + SAKV E GRS+GFGFV F + E+
Sbjct: 299 VRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEA 356
Query: 271 QSALDAMNGVV 281
A+ MNG +
Sbjct: 357 TKAVTEMNGRI 367
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 82 QDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS 141
QD+P+ EQ ++ + + LYV NL + L + F+ GT+ S
Sbjct: 285 QDKPKIEQVPQDR------------SVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITS 332
Query: 142 AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMG 201
A++ + RS+GFGFV S EEA +A+ +G + + + V + R ER A
Sbjct: 333 AKVTME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ--RKEERQA-- 386
Query: 202 PKLQNSY 208
L N Y
Sbjct: 387 -HLSNQY 392
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G VAS + D VT RS G+ +V S + ++A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 118 EELNYTLIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDVAIDNKA 162
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + G S+G+GFV +ET E A+ +NG++
Sbjct: 163 LHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHVNGML 211
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A +AI+
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHV 207
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + +P+ ++ K + F + +Y N+ +T + R
Sbjct: 208 NGMLLNEKKVYVGY-HIPKKDRQS----KFEEMKANFTN----VYVKNIAPDVTDEDFRQ 258
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F+ + G +++ + G++RGFGFV F T E A++ +NG
Sbjct: 259 LFE-KFGDVTSSSLARDQEGKTRGFGFVNFTTHEAAFKAVEELNG 302
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 53/211 (25%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T ++F + G V S+ + D+ ++RGFGFV + E A +A+
Sbjct: 242 VYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQ-EGKTRGFGFVNFTTHEAAFKAVEEL 300
Query: 175 DGSQIGGRTVKVNFPEVPRGGE----RAAMGPKLQ--NSYQGFVDSPHKIYAGNLGWGLT 228
+G G+ + V + E ++ +L+ N YQG +Y NL +
Sbjct: 301 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV-----NLYIKNLDDDVD 355
Query: 229 SQGLRDAFQGQPGLLSAKVIFE-------------------------------------- 250
+ LR F + SAKV+ +
Sbjct: 356 DEKLRQMFAEFGPITSAKVMRDVPQEGEEEAKDQEKDKENQKEGEKEGESAEGAEKKTEK 415
Query: 251 ---RYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ G+S+GFGFV F +D A+ MN
Sbjct: 416 KSDKKLGKSKGFGFVCFSNPDDATKAVAEMN 446
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L + +T + L E F+ AG + S + D +T S G+ +V +A+ +
Sbjct: 2 ASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLE 61
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 62 TMNLDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFVKNLEKSIDNRAL 106
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
DAF G +LS KV+ + S+G+GFV FET E + A++ MNG+V
Sbjct: 107 FDAFSGFGNILSCKVVSDE--NGSKGYGFVHFETQESAEKAIEKMNGIV 153
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 18/181 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M ++ L E+F G S +++ D RS+GFGFV+ + E+
Sbjct: 176 ARAREFTNVYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDE-RGRSKGFGFVSYATHED 234
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA--------MGPKLQNSYQGFVDSPHKI 218
A+ A+ +G ++ GR + V + GER + YQG +
Sbjct: 235 AQRAVDEMNGKELNGRRIYVG--RAQKKGERQTELKRHFEQIKQDRVTRYQGV-----NL 287
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL + + LR F + SAKV+ E G SRGFGFV F ++ A+ MN
Sbjct: 288 YVKNLDDTIDDERLRTEFSPFGTITSAKVMME--GGHSRGFGFVCFSAPDEAAKAVTEMN 345
Query: 279 G 279
G
Sbjct: 346 G 346
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 105/212 (49%), Gaps = 16/212 (7%)
Query: 71 SFDGFQVTEDSQDEPETEQEEEEEEEAVE---EEEEPKVAASDEAARLYVGNLPYSMTSS 127
++ FQ + D+Q ET + + + V + +P + S ++V NL S+ +
Sbjct: 46 AYVNFQQSSDAQRVLETMNLDVIKGKPVRIMWSQRDPSLRKSG-VGNIFVKNLEKSIDNR 104
Query: 128 SLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187
+L + F+ G + S ++V D + S+G+GFV + E A++AI +G I +++KV
Sbjct: 105 ALFDAFSGFGNILSCKVVSDE--NGSKGYGFVHFETQESAEKAIEKMNG--IVLKSLKVF 160
Query: 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKV 247
ER +L + F + +Y N G + + L + F LS KV
Sbjct: 161 VGHFKSRKEREL---ELGARAREFTN----VYIKNFGEDMDNARLGEIFGRFGRALSVKV 213
Query: 248 IFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + GRS+GFGFV++ T ED Q A+D MNG
Sbjct: 214 MTDE-RGRSKGFGFVSYATHEDAQRAVDEMNG 244
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL ++ L F+ GT+ SA+++ + SRGFGFV + +EA +A
Sbjct: 283 QGVNLYVKNLDDTIDDERLRTEFSPFGTITSAKVMME--GGHSRGFGFVCFSAPDEAAKA 340
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 341 VTEMNGKLVTSKPLYVALAQ--RKEERQA---HLTNQY 373
>gi|410080926|ref|XP_003958043.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
gi|372464630|emb|CCF58908.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
Length = 412
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 11/173 (6%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A ++VG L +S+ L F G V A ++Y+R TDRSRG+G+V + E A++A
Sbjct: 163 EPATIFVGRLSWSIDDEWLKNEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKEYAEKA 222
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLGWG 226
++ G +I GR + + + A G + + F D P + ++ GNL +
Sbjct: 223 VKEMHGKEIDGREINCDM-----STSKPAAGN--NDRAKKFGDVPSEPSETLFLGNLSFN 275
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + F ++S ++ T + +GFG+V + ED + ALDA+ G
Sbjct: 276 ADRDNISEMFSKFGEIVSVRIPTHPETEQPKGFGYVQYTNVEDAKKALDALQG 328
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S+ + L++GNL ++ +++E+F++ G + S I T++ +GFG+V +VE+AK
Sbjct: 261 SEPSETLFLGNLSFNADRDNISEMFSKFGEIVSVRIPTHPETEQPKGFGYVQYTNVEDAK 320
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
+A+ G I R V+++F PR
Sbjct: 321 KALDALQGEYIDNRPVRLDF-STPR 344
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A+ L+V NLP S + +L + F + G V S +++ D T S+ GF++ ++A
Sbjct: 177 AAKHFTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQA 236
Query: 168 KEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAG 221
+ A+ + +I G+ + + R E A K++ YQG +Y
Sbjct: 237 EAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGV-----NLYVK 291
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
NL + +GLR+AF+ + SAKVI + GRS+GFGFV F + E+ A+ MNG +
Sbjct: 292 NLDDSIDDEGLREAFKQFGNITSAKVITD-LNGRSKGFGFVCFSSPEEATKAVTEMNGRI 350
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L + F +G V S + D VT RS G+ +V +A+ A+
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S QG ++ NL + ++ L
Sbjct: 62 TMNFDVIKGKPIRIMW---------SQRDPSLRRSGQG------NVFIKNLDRSIDNKAL 106
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + S+GFGFV +E+ E Q A++ +NG++
Sbjct: 107 YDTFSSFGNILSCKVVCD--INGSKGFGFVHYESDESAQRAIEKVNGML 153
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E E + + E +++E + + LYV NL S+ L E F + G +
Sbjct: 258 AQKKAERSSELKAKYEKIKQERIQRY----QGVNLYVKNLDDSIDDEGLREAFKQFGNIT 313
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
SA+++ D + RS+GFGFV S EEA +A+ +G GG+ + V + R +R A
Sbjct: 314 SAKVITD-LNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQ--RKEDRKA- 369
Query: 201 GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR------DAFQGQP 240
LQ Y V + ++ A +G + +Q + QGQP
Sbjct: 370 --HLQQQYMQRVSTGIRMQAF-MGNQVVNQNFQPPRYILPTMQGQP 412
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+GFGFV S E A+ AI
Sbjct: 92 VFIKNLDRSIDNKALYDTFSSFGNILSCKVVCD--INGSKGFGFVHYESDESAQRAIEKV 149
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V R R + ++ + F + ++ NL + L
Sbjct: 150 NGMLMEDKKV-----FVARFKSRNDRMREFGDAAKHFTN----LFVKNLPDSWDTDALLK 200
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ ++S KVI + TG S+ GF++F+ + ++A++ M+
Sbjct: 201 NFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMH 244
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +T S L E+F+ G + S + D T RS G+ ++ +A+ A+
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ I G+ +++ + G ++ MG I+ NL + ++ L D
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSGMG---------------NIFIKNLENSIDNKALYD 117
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS+KV++ + SRGFGFV FET E Q A++ MNG++
Sbjct: 118 TFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTMNGML 162
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G++ S+++VY+ SRGFGFV + E A++AI
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R A +G + GF + IY NL + Q L+D
Sbjct: 159 NGMLLNDRKVFVGHFK-SRQKREAELGARAL----GFTN----IYVKNLHANVDEQRLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + S KV+ + G+SRGFGFV FE E+ Q A+D MNG
Sbjct: 210 LFSQFGNMQSVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHMNG 253
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 18/175 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL ++ L ++F++ G + S +++ D +SRGFGFV EEA++A+
Sbjct: 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA--------MGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+G ++ G+ + V + ER + M + QN YQG +Y NL
Sbjct: 252 NGKEVSGQLLYVG--RAQKRAERQSELKRRFEQMKQERQNRYQGV-----NLYVKNLDDS 304
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ + L++ F + SAKV+ E + S+GFGFV F + E+ A+ MNG +
Sbjct: 305 INDERLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q E + E + E +++E + + + LYV NL S+ L EVF+ G +
Sbjct: 266 AQKRAERQSELKRRFEQMKQERQNRY----QGVNLYVKNLDDSINDERLKEVFSTYGVIT 321
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
SA+++ + + S+GFGFV S EEA +A+ +G +G + + V + R ER A+
Sbjct: 322 SAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ--RKEERKAI 377
Query: 201 GPKLQNSYQ 209
L N Y+
Sbjct: 378 ---LTNQYR 383
>gi|325091401|gb|EGC44711.1| nucleic acid-binding protein [Ajellomyces capsulatus H88]
Length = 359
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 14/195 (7%)
Query: 84 EPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
EP + ++ + E + E ++ +YVGNL + +T+ L A+ GT+ S
Sbjct: 122 EPYGRRSFQQTDRRNESQRERELLPIKPNETIYVGNLFFEVTAEDLKRDMAKFGTIYSVR 181
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
IVYD SRGF +V SVE A+ AI + S GR + VN+ R + P+
Sbjct: 182 IVYD-SRGMSRGFAYVQFDSVEAAEAAISEMNMSIYEGRRIVVNY------STRNSAAPR 234
Query: 204 LQNSYQGFVDSPHK-IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFV 262
+ S P K ++ GNL + +T + L D F+ P + +V ++ TGR RGF
Sbjct: 235 TRAS------EPTKTLFIGNLSFEMTDRELNDLFRDIPNVDDVRVSVDKRTGRPRGFAHA 288
Query: 263 TFETAEDLQSALDAM 277
F E ++A++ +
Sbjct: 289 DFLDVESAKAAMEIL 303
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P+ AS+ L++GNL + MT L ++F + V + D+ T R RGF
Sbjct: 233 PRTRASEPTKTLFIGNLSFEMTDRELNDLFRDIPNVDDVRVSVDKRTGRPRGFAHADFLD 292
Query: 164 VEEAKEAIRLFDGSQIGGRTVKVNF 188
VE AK A+ + GR +++++
Sbjct: 293 VESAKAAMEILKEKAPYGRPLRLDY 317
>gi|347966116|ref|XP_321584.5| AGAP001538-PA [Anopheles gambiae str. PEST]
gi|333470203|gb|EAA00839.5| AGAP001538-PA [Anopheles gambiae str. PEST]
Length = 408
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 91/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +YVG L +T + L E+F ++G V + + DRVT +G+GFV E
Sbjct: 6 IAERNQDATIYVGGLDDKVTETLLWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFLGEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ ++VN +++Q +D I+ GNL
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN----------------KASAHQKSLDVGANIFIGNLDL 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG S+GF F+ F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFINFASFEASDAAMDAMNG 164
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A +++GNL + L + F+ G + + +I+ D T S+GF F+ S E +
Sbjct: 97 DVGANIFIGNLDLEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFINFASFEASD 156
Query: 169 EAIRLFDGSQIGGRTVKVN--FPEVPRGGERAAMGPKL---QNSYQGFVDSPHKIYA 220
A+ +G + R + V+ F + +G + +L QN D PH+++A
Sbjct: 157 AAMDAMNGQYLCNRPISVSYAFKKDSKGERHGSAAERLLAAQNPLS-HADRPHQLFA 212
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 20/189 (10%)
Query: 97 AVEEEEEPKVAASDEA----ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR 152
A + E P AA A A LYVG L S+T + L E+F+ G VAS + D VT R
Sbjct: 34 AADGNETPNSAAPTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRR 93
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFV 212
S G+ +V + + + A+ + + I G+ ++ + + P L+ + QG
Sbjct: 94 SLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQ---------RDPALRKTGQG-- 142
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
++ NL + ++ L D F +LS KV + + G S+G+GFV +ETAE +
Sbjct: 143 ----NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAATN 197
Query: 273 ALDAMNGVV 281
A+ +NG++
Sbjct: 198 AIKHVNGML 206
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAATNAIKHV 202
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + +Y NL +T++ R+
Sbjct: 203 NGMLLNEKKVFV--------GHHIAKKDR-QSKFEEMKANFTNVYVKNLEPEVTNEEFRE 253
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + TG+SRGFGFV F + +A++ +N
Sbjct: 254 LFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLN 297
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL +T+ E+F + G + SA + D T +SRGFGFV + + A A+
Sbjct: 237 VYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDL 296
Query: 175 DGSQIGGRTVKVNFP-------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ + G+ + V E R AA K + YQG +Y NL +
Sbjct: 297 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKA-SKYQGV-----NLYVKNLTDDI 350
Query: 228 TSQGLRDAFQGQPGLLSAKVI 248
+ LRD F G + SA+V+
Sbjct: 351 DDEKLRDLFIGFGNITSARVM 371
>gi|365986018|ref|XP_003669841.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
gi|343768610|emb|CCD24598.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
Length = 426
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A ++VG L +S+ L + F G V A ++Y+R TDRSRG+G+V A++A
Sbjct: 169 EPATIFVGRLSWSIDDEWLKKEFEHIGGVVGARVIYERGTDRSRGYGYVDFEDKSYAEKA 228
Query: 171 IRLFDGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLGW 225
I+ G +I GR + V+ P GG A + F D P + ++ GNL +
Sbjct: 229 IQEMQGKEIDGRPINVDMSTSKPAGGNDRA---------KKFGDVPSEPSDTLFLGNLSF 279
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + F ++S ++ T + +GFG+V F ED + AL+ + G
Sbjct: 280 NADKDNIYETFSKYGEIISVRIPTHPETEQPKGFGYVQFSNIEDAKKALEGLQG 333
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S+ + L++GNL ++ ++ E F++ G + S I T++ +GFG+V ++E+AK
Sbjct: 266 SEPSDTLFLGNLSFNADKDNIYETFSKYGEIISVRIPTHPETEQPKGFGYVQFSNIEDAK 325
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
+A+ G I R V++++ PR
Sbjct: 326 KALEGLQGEYIDNRAVRLDY-STPR 349
>gi|410730519|ref|XP_003980080.1| hypothetical protein NDAI_0G04190 [Naumovozyma dairenensis CBS 421]
gi|401780257|emb|CCK73404.1| hypothetical protein NDAI_0G04190 [Naumovozyma dairenensis CBS 421]
Length = 359
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 10/168 (5%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R++VGNL + T+ L + F++ G V +A+I+ R +G G V + ++A EAI
Sbjct: 69 RVFVGNLSFDTTAEDLVDYFSQVGEVVTADII--TFKGRHKGLGTVEFTNADDATEAIER 126
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAM--GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
D + GR + V + P G + M P + QG+ + + NL + +T Q
Sbjct: 127 CDNTHFMGRDIYVKDDQPPPGARQKTMRIAPIRDINRQGY-----EAFVINLPYSITWQN 181
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L+D F+ +L A + + Y G SRG G V + T + + A+D NG
Sbjct: 182 LKDLFRECGDILRADIELD-YNGFSRGLGSVLYATEDAMHRAIDTFNG 228
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 116 YVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
+V NLPYS+T +L ++F E G + A+I D SRG G V + + AI F+
Sbjct: 169 FVINLPYSITWQNLKDLFRECGDILRADIELD-YNGFSRGLGSVLYATEDAMHRAIDTFN 227
Query: 176 GSQIGGRTVKV--------NFPEVPRG--GERAAMGPKLQNSYQGFVDSPHK---IYAGN 222
G ++ GR ++V + +P G E P +G V + + ++ +
Sbjct: 228 GYELEGRVLEVREGKFNPSHKEHIPEGTLDEVEPSIPTQSPFVEGVVGNGERNPTVFCQS 287
Query: 223 LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L T L D F + A++I++ G S G V + +A+ + +D +N
Sbjct: 288 LPLSTTVPDLYDLFGSFGDINHAELIYDT-NGLSTGSAVVEYMSADYAEMCIDKLN 342
>gi|330914835|ref|XP_003296804.1| hypothetical protein PTT_06993 [Pyrenophora teres f. teres 0-1]
gi|311330893|gb|EFQ95099.1| hypothetical protein PTT_06993 [Pyrenophora teres f. teres 0-1]
Length = 326
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 10/152 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+GNL Y +T+ L VF+ G V S +IVYD SRGFG+V G++ +A+ AI
Sbjct: 138 LYIGNLYYEVTADQLKRVFSRFGEVESVKIVYDN-RGLSRGFGYVEFGNLADAQAAIDNL 196
Query: 175 DGSQIGGRTVKVNFPE-VPRGGERAAMGPKLQNSYQGFVDSPHK-IYAGNLGWGLTSQGL 232
D GR + V + + P R++ G S++ ++P K ++ GN+ + ++ + L
Sbjct: 197 DMQVFEGRNMVVQYHQPKPNSMSRSSAG-----SFEA--NTPSKTLFIGNMSFEMSDKDL 249
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
D F+ ++ +V +R TG+ RGF F
Sbjct: 250 NDLFRDIRNVMDVRVAIDRRTGQPRGFAHADF 281
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 215 PHK-IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
P+K +Y GNL + +T+ L+ F + S K++++ G SRGFG+V F D Q+A
Sbjct: 134 PNKMLYIGNLYYEVTADQLKRVFSRFGEVESVKIVYDN-RGLSRGFGYVEFGNLADAQAA 192
Query: 274 LDAMN 278
+D ++
Sbjct: 193 IDNLD 197
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GN+ + M+ L ++F + V + DR T + RGF V A +A +
Sbjct: 235 LFIGNMSFEMSDKDLNDLFRDIRNVMDVRVAIDRRTGQPRGFAHADFIDVASATKAKEVL 294
Query: 175 DGSQIGGRTVKVNF 188
I GR +++++
Sbjct: 295 SEKIIYGRQLRIDY 308
>gi|195174722|ref|XP_002028121.1| GL21313 [Drosophila persimilis]
gi|194115861|gb|EDW37904.1| GL21313 [Drosophila persimilis]
Length = 341
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 91/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +Y G L ++ S L E+F +AG V + + DRVT +G+GFV S E
Sbjct: 6 IAERNQDATIYAGGLDDKVSESLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ ++VN +++Q +D I+ GNL
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN----------------KASAHQKNLDVGANIFIGNLDV 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG+S+ F F+ F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNG 164
>gi|451856277|gb|EMD69568.1| hypothetical protein COCSADRAFT_32266 [Cochliobolus sativus ND90Pr]
Length = 754
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 9/182 (4%)
Query: 106 VAASDEAAR--LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
V + E AR L+V +L +TS L E F+E+ + +A +V D+ T S+G+GFVT
Sbjct: 34 VGTAKEVARRQLFVRSLAPDVTSEDLTEYFSESYPIKNALVVLDKETRESKGYGFVTFAD 93
Query: 164 VEEAKEAIRLFDGSQIGGRTVKVNFPEV-PRGGE----RAAMGPKLQNSYQGFVDSPHKI 218
VE+A+ A + +QI G+ +KV+F E R GE RAA K + Q KI
Sbjct: 94 VEDAQRAKEELNNTQIKGKKIKVDFAEARQREGEEKRPRAADRIKAEREQQVKEAQVPKI 153
Query: 219 YAGNLGWGL-TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
NL W + T + L F+ G ++ + ++ G RGFGFV+ ++ + A+ +
Sbjct: 154 IVRNLPWTIKTPEDLEKLFRCY-GKVNFANLPKKPNGELRGFGFVSLRGKKNAEKAMQEL 212
Query: 278 NG 279
NG
Sbjct: 213 NG 214
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSM-TSSSLAEVFAEAGTVASAEIVYDRVTD 151
E E+ V+E + PK+ V NLP+++ T L ++F G V A + +
Sbjct: 140 EREQQVKEAQVPKI---------IVRNLPWTIKTPEDLEKLFRCYGKVNFANLPK-KPNG 189
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
RGFGFV++ + A++A++ +G +IGGR + V++
Sbjct: 190 ELRGFGFVSLRGKKNAEKAMQELNGKEIGGRPIAVDW 226
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
++V N+P+++ L E F + G + A +V DR T+R +G FV
Sbjct: 317 VFVRNVPFTVDDERLKEHFQQFGGIRYARVVVDRDTERPKGTAFV 361
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 17/175 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N M + E+ AEAG + S +++ D +S+GFGFV+ + EEA+EA+ +
Sbjct: 196 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTD-PEGKSKGFGFVSFETPEEAEEAVNVL 254
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-----MGPKLQ---NSYQGFVDSPHKIYAGNLGWG 226
+G +IGGR + + ERAA + K Q N +QG +Y NL
Sbjct: 255 NGKEIGGRRLWAG--RAKKRAERAAEVKAEIEKKRQERINRFQGV-----NLYIKNLDDP 307
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ + LR+ F + SAKV+ + G S+GFGFV F + E+ A+ MNG +
Sbjct: 308 IDDERLREEFSPYGTISSAKVMKDD-KGNSKGFGFVCFSSPEEATKAVTEMNGRI 361
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
AA+ A LYVG+L +T + L E F+ AG+V S + D VT RS G+ +V
Sbjct: 7 AANYPIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGH 66
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A++A+ + I GR ++ + + P L+ S G I+ NL
Sbjct: 67 AEKALDTMNFDPIKGRPCRIMWQQ---------RDPSLRKSGVG------NIFIKNLDKS 111
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS K I + G +G+GFV FET + A+ ++G++
Sbjct: 112 IDNKSLYDTFSAFGNILSCK-IAQDELGNPKGYGFVHFETEDAALEAIARVDGML 165
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + SL + F+ G + S +I D + + +G+GFV + + A EAI
Sbjct: 103 IFIKNLDKSIDNKSLYDTFSAFGNILSCKIAQDELGN-PKGYGFVHFETEDAALEAIARV 161
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
DG + + V V R + K+ + F + +Y N G + + +++
Sbjct: 162 DGMLLNDKKVFVG-----RWMSKKERIEKMGTQPKKFTN----VYVKNFGDDMDDEQMKE 212
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++S KV+ + G+S+GFGFV+FET E+ + A++ +NG
Sbjct: 213 ICAEAGKIVSLKVMTD-PEGKSKGFGFVSFETPEEAEEAVNVLNG 256
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LY+ NL + L E F+ GT++SA+++ D + S+GFGFV S EEA +A
Sbjct: 295 QGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGN-SKGFGFVCFSSPEEATKA 353
Query: 171 IRLFDG 176
+ +G
Sbjct: 354 VTEMNG 359
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A LYVG+L ++ S L EVF + G V S + D +T +S G+ +V G+ ++A +A+
Sbjct: 25 APSLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQAL 84
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
L + + + G+ +++ + + P ++ S I+ NL + ++
Sbjct: 85 ELLNFTLVKGKPIRIMY---------SHRDPSIRKS------GAANIFIKNLEKSIDNKA 129
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS +V+ + G S+G+GFV FE E Q A++ +NG++
Sbjct: 130 LHDTFSAFGTILSCRVVMDD-AGNSKGYGFVQFEKEESAQIAIEKVNGML 178
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
AA +++ NL S+ + +L + F+ GT+ S +V D + S+G+GFV E A+ AI
Sbjct: 113 AANIFIKNLEKSIDNKALHDTFSAFGTILSCRVVMDDAGN-SKGYGFVQFEKEESAQIAI 171
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G I R V V P + R ER K N+ +Y NL T +
Sbjct: 172 EKVNGMLINDRQVSVA-PFI-RKQERDMASSKNFNN----------VYVKNLAEATTDED 219
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR F G G +S+ V+ G+S+ FGFV FE +D +A++ +NG
Sbjct: 220 LRKVFAGF-GPISSAVVMRDADGKSKCFGFVNFENVDDAANAVENLNG 266
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 13/185 (7%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
++E +A+S +YV NL + T L +VFA G ++SA ++ D +S+ FGFV
Sbjct: 192 KQERDMASSKNFNNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRD-ADGKSKCFGFVN 250
Query: 161 MGSVEEAKEAIRLFDGSQIG------GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDS 214
+V++A A+ +G I GR K + E + + + + +QG
Sbjct: 251 FENVDDAANAVENLNGKLINEKEWYVGRAQKKSEREAELKAKFEQVRKEKEEKFQGV--- 307
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+Y N+ + + LR+ F + S KV+ + G+S G GFVTF E+ A+
Sbjct: 308 --NLYLKNIDDSIDDEKLRELFAVFGTVTSCKVM-KSPQGQSMGSGFVTFSAPEEAMQAV 364
Query: 275 DAMNG 279
+ MNG
Sbjct: 365 NDMNG 369
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E E E + + E V +E+E K + LY+ N+ S+ L E+FA GTV
Sbjct: 279 AQKKSEREAELKAKFEQVRKEKEEKF----QGVNLYLKNIDDSIDDEKLRELFAVFGTVT 334
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA 199
S +++ +S G GFVT + EEA +A+ +G +G + + V + R ER A
Sbjct: 335 SCKVM-KSPQGQSMGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALAQ--RKEERRA 390
>gi|356538948|ref|XP_003537962.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Glycine max]
Length = 401
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 21/176 (11%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A +E L++G+L Y + S L++ FA G V S +I+ +++T + G+GFV S A
Sbjct: 5 AIEEVRTLWIGDLQYWVDESYLSQCFAHNGEVVSIKIIRNKLTGQPEGYGFVEFVSHASA 64
Query: 168 KEAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ +R ++G+Q+ G +T ++N+ G H I+ G+L
Sbjct: 65 EAFLRTYNGAQMPGTEQTFRLNWASFGDSGPD------------------HSIFVGDLAP 106
Query: 226 GLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T L++ F+ P + AKV+ + TGRS+G+GFV F A+ MNGV
Sbjct: 107 DVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFADEAQRNRAMTEMNGV 162
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 42/192 (21%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V D T RS+G+GFV + A+
Sbjct: 99 IFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFADEAQRNRAMTE 158
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY-------------- 219
+G R +++ +A PK S+Q P +Y
Sbjct: 159 MNGVYCSTRPMRI-----------SAATPKKNASFQHQYAPPKAMYQFPAYSAPVSAVAP 207
Query: 220 ----------AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
GNL +T + L+ F ++ K+ Y G +G+G+V F T
Sbjct: 208 ENDVNNTTVCIGNLDLNVTEEELKQTFMQFGDIVLVKI----YAG--KGYGYVQFGTRVS 261
Query: 270 LQSALDAMNGVV 281
+ A+ M G V
Sbjct: 262 AEDAIQRMQGKV 273
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
Query: 117 VGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
+GNL ++T L + F + G + +I +G+G+V G+ A++AI+ G
Sbjct: 218 IGNLDLNVTEEELKQTFMQFGDIVLVKIY------AGKGYGYVQFGTRVSAEDAIQRMQG 271
Query: 177 SQIGGRTVKVNF-------PEVPRGGERAAMGPKLQNSYQGF 211
IG + +++++ +VP GG M P ++Y G+
Sbjct: 272 KVIGQQVIQISWGSSMTARQDVP-GGWGVQMDPSQWSAYYGY 312
>gi|170590788|ref|XP_001900153.1| Hypothetical RNA-binding protein C08B11.5 in chromosome II,
putative [Brugia malayi]
gi|158592303|gb|EDP30903.1| Hypothetical RNA-binding protein C08B11.5 in chromosome II,
putative [Brugia malayi]
Length = 375
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 17/171 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
++ A +YVG L +T + L E+F +AG V S + DRVT +GFGF+ E+A
Sbjct: 10 NQDATIYVGGLDEKVTDAILWELFVQAGPVVSVNMPKDRVTSSHQGFGFIEFMGEEDADY 69
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI++ + ++ G+ +KVN ++++ +D ++ GNL +
Sbjct: 70 AIKIMNMIKLYGKPIKVN----------------KASAHEKNMDVGANVFVGNLDPEVDE 113
Query: 230 QGLRDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L D F +L K++ + TG S+GF FV F + E SA++AMNG
Sbjct: 114 KLLFDTFSAFGVILQVPKIMRDAETGXSKGFAFVNFASFEASDSAIEAMNG 164
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASA-EIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A ++VGNL + L + F+ G + +I+ D T S+GF FV S E +
Sbjct: 97 DVGANVFVGNLDPEVDEKLLFDTFSAFGVILQVPKIMRDAETGXSKGFAFVNFASFEASD 156
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI +G + R + V++
Sbjct: 157 SAIEAMNGQFLCNRAITVSY 176
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 18/191 (9%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+E E A + E +Y+ N M L E+F + G S ++ D + +S+GFGF
Sbjct: 177 KEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD-SGKSKGFGF 235
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA--------MGPKLQNSYQG 210
V+ E+A+ A+ +G ++ G+ V V + GER M YQG
Sbjct: 236 VSFERHEDAQRAVDEMNGKEMNGKQVYVG--RAQKKGERQTELKRKFEQMKQDRMTRYQG 293
Query: 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
+Y NL GL + LR F + SAKV+ E GRS+GFGFV F + E+
Sbjct: 294 V-----NLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEA 346
Query: 271 QSALDAMNGVV 281
A+ MNG +
Sbjct: 347 TKAVTEMNGRI 357
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I GR V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGRPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGML 162
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 14/166 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 175 DGSQIGGRTVKV-NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A MG + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAEMGARAKE----FTN----VYIKNFGEDMDDEKLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F LS +V+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 209 EIFCKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEMNG 253
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKV 186
+ +G + + + V
Sbjct: 350 VTEMNGRIVATKPLYV 365
>gi|210075933|ref|XP_503927.2| YALI0E14058p [Yarrowia lipolytica]
gi|199426916|emb|CAG79520.2| YALI0E14058p [Yarrowia lipolytica CLIB122]
Length = 417
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+L+VGNLPYS L ++F EAG + A+I+ RS+G G V + E+A AI
Sbjct: 205 GTQLFVGNLPYSTGWQDLKDLFREAGQIVRADIMTSH-DGRSKGSGIVLFETAEDAHRAI 263
Query: 172 RLFDGSQIGGRTVKV---NFPEVPRGGE-----RAAMGPKLQNSYQ----------GFVD 213
F+G Q+GGR ++V F PRGG R P QN + G D
Sbjct: 264 ERFNGHQMGGRAIEVREDRFAGPPRGGPPARVARTPFAPAPQNPPRVPSEFSDGAIGGGD 323
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
I+ GNL W Q L D F+ + A++ F G+ G G V FET + +
Sbjct: 324 PSDTIFVGNLPWSTADQDLYDLFETVGKVTKAEIQF-LPDGKKAGSGVVQFETPASAEIS 382
Query: 274 LDAMNG 279
+ +G
Sbjct: 383 IAKFSG 388
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+S + R+YVGNL Y + L + +AG V A+++ RS+G G V + EEA
Sbjct: 84 SSQQDRRVYVGNLAYEVKWHHLKDFMRQAGNVLFADVLL-MPNGRSKGCGIVEYSTREEA 142
Query: 168 KEAIRLFDGSQIGGRTVKVN--------------FPEVPRGGERAAMGPKLQNSYQGFVD 213
+ A+ ++ GR V V P R G R+ G S Q
Sbjct: 143 ENAVNTLTNQELMGRVVYVREDRESEPKFSQPNLGPPGARDGGRSERGGDFGGSRQSGGG 202
Query: 214 SP-HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+P +++ GNL + Q L+D F+ + G + I + GRS+G G V FETAED
Sbjct: 203 APGTQLFVGNLPYSTGWQDLKDLFR-EAGQIVRADIMTSHDGRSKGSGIVLFETAEDAHR 261
Query: 273 ALDAMNG 279
A++ NG
Sbjct: 262 AIERFNG 268
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVTMGSV 164
+ D + ++VGNLP+S L ++F G V AEI + + D + G G V +
Sbjct: 319 IGGGDPSDTIFVGNLPWSTADQDLYDLFETVGKVTKAEIQF--LPDGKKAGSGVVQFETP 376
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNF-----PEVP 192
A+ +I F G G R +++++ P++P
Sbjct: 377 ASAEISIAKFSGYNYGRRDLELSYVRRTEPQIP 409
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 15/167 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L + S L E+F+ G VAS + D VT RS G+ +V + +A+ A+
Sbjct: 41 LYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAVTRRSLGYSYVNFHQMADAERAMDTM 100
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ S I G+ ++ + + P L+ S G I+ NL + ++ L D
Sbjct: 101 NFSMIKGKPCRIMW---------SQRDPSLRRSGVG------NIFVKNLNEAIDNKQLYD 145
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV+ +R G S G+G+V +ETAE +A++ ++G++
Sbjct: 146 TFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDGML 192
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 83/184 (45%), Gaps = 20/184 (10%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA-- 167
D Y+ N+PY + L + FA+ G V SA + + T+++ GFGF+ E A
Sbjct: 213 DSWTNCYIKNVPYEWDDARLNQEFAQFGEVLSATVSRED-TNQTLGFGFINFAEHESAVA 271
Query: 168 -------KEAIRLFDGSQIG-----GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP 215
KE DG +I GR K + E + A + +QG
Sbjct: 272 AVEALNGKEYTTTLDGEEITQQIYVGRAQKKSERERELRAKFEAEKMDRISKFQGV---- 327
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+Y NL +T LRD F + SA+V+ + GRSRGFGFV + T E+ A++
Sbjct: 328 -NLYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVN 386
Query: 276 AMNG 279
MNG
Sbjct: 387 EMNG 390
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 66 RQFSASFDGFQVTEDSQ-DEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSM 124
++++ + DG ++T+ + + E E E A E E+ + + LYV NL S+
Sbjct: 279 KEYTTTLDGEEITQQIYVGRAQKKSERERELRAKFEAEKMDRISKFQGVNLYVKNLDDSV 338
Query: 125 TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184
T L + FA GT+ SA ++ D RSRGFGFV + EE+ A+ +G I + +
Sbjct: 339 TDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGKLIANKPI 398
Query: 185 KV 186
V
Sbjct: 399 FV 400
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 15/165 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL ++ + L + F+ G + S ++V DR S G+G+V + E A AI
Sbjct: 129 IFVKNLNEAIDNKQLYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKL 188
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
DG I G+ V+V G ++ + + +DS Y N+ + L
Sbjct: 189 DGMLIDGQEVQV--------------GHFMRRNDRPDIDSWTNCYIKNVPYEWDDARLNQ 234
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LSA V E T ++ GFGF+ F E +A++A+NG
Sbjct: 235 EFAQFGEVLSATVSRED-TNQTLGFGFINFAEHESAVAAVEALNG 278
>gi|240275573|gb|EER39087.1| nucleic acid-binding protein [Ajellomyces capsulatus H143]
Length = 332
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 14/195 (7%)
Query: 84 EPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
EP + ++ + E + E ++ +YVGNL + +T+ L A+ GT+ S
Sbjct: 95 EPYGRRSFQQTDRRNESQRERELLPIKPNETIYVGNLFFEVTAEDLKRDMAKFGTIYSVR 154
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
IVYD SRGF +V SVE A+ AI + S GR + VN+ R + P+
Sbjct: 155 IVYD-SRGMSRGFAYVQFDSVEAAEAAISEMNMSIYEGRRIVVNY------STRNSAAPR 207
Query: 204 LQNSYQGFVDSPHK-IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFV 262
+ S P K ++ GNL + +T + L D F+ P + +V ++ TGR RGF
Sbjct: 208 TRAS------EPTKTLFIGNLSFEMTDRELNDLFRDIPNVDDVRVSVDKRTGRPRGFAHA 261
Query: 263 TFETAEDLQSALDAM 277
F E ++A++ +
Sbjct: 262 DFLDVESAKAAMEIL 276
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P+ AS+ L++GNL + MT L ++F + V + D+ T R RGF
Sbjct: 206 PRTRASEPTKTLFIGNLSFEMTDRELNDLFRDIPNVDDVRVSVDKRTGRPRGFAHADFLD 265
Query: 164 VEEAKEAIRLFDGSQIGGRTVKVNF 188
VE AK A+ + GR +++++
Sbjct: 266 VESAKAAMEILKEKAPYGRPLRLDY 290
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T S L ++F + G V S + D T RS G+G+V + ++A A+ +
Sbjct: 31 LYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 90
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G+ ++V + + P ++ S G I+ NL + + L D
Sbjct: 91 NFTPLNGKPIRVMY---------SHRDPSIRKSGAG------NIFIKNLDKAIDHKALHD 135
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+S+G+GFV F+ E A++ +NG++
Sbjct: 136 TFSAFGSILSCKVALDS-SGQSKGYGFVQFDNEESALKAIEKLNGML 181
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 19/171 (11%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL ++ +L + F+ G++ S ++ D + +S+G+GFV + E A +AI
Sbjct: 116 AGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDS-SGQSKGYGFVQFDNEESALKAI 174
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ-GFVDSP--HKIYAGNLGWGLT 228
+G + + V V GP L+ + G VD + ++ NL T
Sbjct: 175 EKLNGMLLNDKQVYV--------------GPFLRKQERDGVVDKSKFNNVFVKNLSETTT 220
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L AF + G L++ V+ G+SR FGFV FE A+D A+D +NG
Sbjct: 221 EEDLNKAFS-EFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNG 270
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 13/188 (6%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ ++E V + ++V NL + T L + F+E GT+ S ++ D +SR FG
Sbjct: 193 LRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRD-ADGKSRCFG 251
Query: 158 FVTMGSVEEAKEAIRLFDGSQIG------GRTVKVNFPEVPRGGERAAMGPKLQNSYQGF 211
FV + ++A A+ +G + G+ K + EV + + YQG
Sbjct: 252 FVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQG- 310
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
+Y NL + L++ F + S KV+ + G SRG GFV F T ++
Sbjct: 311 ----ANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDP-NGISRGSGFVAFSTPDEAS 365
Query: 272 SALDAMNG 279
AL MNG
Sbjct: 366 RALVEMNG 373
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
+ +++ E E E E+ A+D + A LY+ NL S+ L E+FA GT+ S +
Sbjct: 282 KAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCK 341
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
++ D SRG GFV + +EA A+ +G + + + V
Sbjct: 342 VMRDP-NGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYV 383
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V S ++ ++A+
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGEKAL 122
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 123 EELNYTLIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDVAIDNKA 167
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + G S+G+GFV +ET E A+ +NG++
Sbjct: 168 LHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHVNGML 216
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A +AI+
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHV 212
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + +P+ ++ K + F + +Y N+ +T + R+
Sbjct: 213 NGMLLNEKKVYVGY-HIPKKDRQS----KFEEMKANFTN----VYVKNINHEVTEEEFRE 263
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + G +++ + G+SRGFGFV F T A++ +NG
Sbjct: 264 LF-AKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAAKAVEELNG 307
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 82/214 (38%), Gaps = 58/214 (27%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ + +T E+FA+ G V S+ + D +SRGFGFV + A +A+
Sbjct: 247 VYVKNINHEVTEEEFRELFAKYGEVTSSSLARDN-EGKSRGFGFVNFTTHASAAKAVEEL 305
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+G + G+ + V E+ + E A + + N YQG +Y NL
Sbjct: 306 NGKEFRGQELYVGRAQKKHEREEELRKSYEAARL--EKANKYQGV-----NLYIKNLADD 358
Query: 227 LTSQGLRDAFQGQPGLLSAKVI-------------------------------------- 248
+ LR F + SAKV+
Sbjct: 359 VDDDKLRQMFSEFGPITSAKVMRDAPPEPPAGSEGDKEGKDKENKKESEKEGEGEAAEKK 418
Query: 249 ----FERYTGRSRGFGFVTFETAEDLQSALDAMN 278
ER G+S+GFGFV F +D A+ MN
Sbjct: 419 TEKKVERKLGKSKGFGFVCFSNPDDATKAVAEMN 452
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G VAS + D VT RS G+ +V S + ++A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 119
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 120 EELNYTLIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDVAIDNKA 164
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + G S+G+GFV +ET E A+ +NG++
Sbjct: 165 LHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAHQAIKHVNGML 213
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A +AI+
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAHQAIKHV 209
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K + F + IY N+ + R+
Sbjct: 210 NGMLLNEKKVYVGH-HIPKKDRQS----KFEEMKANFTN----IYIKNISTEASDDEFRE 260
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F+ + G +++ + G+SRGFGFV F T E A++ ++G
Sbjct: 261 LFE-KYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELHG 304
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 12/140 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ + E+F + G + S+ + D+ +SRGFGFV + E A +A+
Sbjct: 244 IYIKNISTEASDDEFRELFEKYGDITSSSLARDQ-EGKSRGFGFVNFTTHESAAKAVEEL 302
Query: 175 DGSQIGGRTVKVNFPEVPRGGE----RAAMGPKLQ--NSYQGFVDSPHKIYAGNLGWGLT 228
G G+ + V + E ++ +L+ N YQG +Y NL +
Sbjct: 303 HGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV-----NLYIKNLDDDVD 357
Query: 229 SQGLRDAFQGQPGLLSAKVI 248
+ LR F + SAKV+
Sbjct: 358 DEKLRQMFAEFGPITSAKVM 377
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 90/167 (53%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++T S L + F E V S + D T+ S G+G+V + ++A++A++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ S + G+ +++ + R+ +G ++ NL + ++ L +
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVG---------------NLFVKNLDKSVDNKTLHE 152
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
AF G ++S KV + + G+SRG+GFV F+T + ++A++ +NG V
Sbjct: 153 AFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKV 198
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V NL S+ + +L E F+ GT+ S ++ D + +SRG+GFV + + AK AI
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMG-QSRGYGFVQFDTEDSAKNAIEKL 194
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + + V R ER + K++ + +Y NL T L+
Sbjct: 195 NGKVLNDKQIFVG--PFLRKEERESAADKMKFT---------NVYVKNLSEATTDDELKT 243
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F GQ G +S+ V+ G+SR FGFV FE ED A++A+NG
Sbjct: 244 TF-GQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG 287
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 13/188 (6%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ +EE A + +YV NL + T L F + G+++SA ++ D +SR FG
Sbjct: 210 LRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFG 268
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPH 216
FV + E+A A+ +G + + V + + ER +L Y QG D +
Sbjct: 269 FVNFENPEDAARAVEALNGKKFDDKEWYVG--KAQKKSEREL---ELSRRYEQGSSDGGN 323
Query: 217 K-----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
K +Y NL +T + LR+ F + S KV+ + +G S+G GFV F A +
Sbjct: 324 KFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEAS 382
Query: 272 SALDAMNG 279
L+ MNG
Sbjct: 383 RVLNEMNG 390
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL ++T L E+FAE GT+ S +++ D + S+G GFV + EA
Sbjct: 326 DGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRV 384
Query: 171 IRLFDGSQIGGRTVKV 186
+ +G +GG+ + V
Sbjct: 385 LNEMNGKMVGGKPLYV 400
>gi|125982457|ref|XP_001355096.1| GA17684 [Drosophila pseudoobscura pseudoobscura]
gi|54643408|gb|EAL32152.1| GA17684 [Drosophila pseudoobscura pseudoobscura]
Length = 341
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +Y G L ++ S L E+F +AG V + + DRVT +G+GFV S E
Sbjct: 6 IAERNQDATIYAGGLDDKVSESLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ ++VN +A+ ++Q +D I+ GNL
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN---------KAS-------AHQKNLDVGANIFIGNLDV 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG+S+ F F+ F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNG 164
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N +L +VFA+ G + S E++ V +S+GFGFV + EEA+ A++
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ--------NSYQGFVDSPHKIYAGNLGWG 226
S I G +K++ + ER A K YQG +Y NL
Sbjct: 273 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGV-----NLYVKNLDET 327
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ GL+ F+ + SAKV+ + GRS+GFGFV FE E+ SA+ MN
Sbjct: 328 VDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMN 378
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ +S A LYVG+L + S L E F+ AG V S + D T S G+ +V
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
+A+ A+ + + G+ +++ + + R+ G I+ NL
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG---------------NIFIKNLD 128
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ + D F +LS KV + G S+G+GFV FET E Q+A+ +NG++
Sbjct: 129 KVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGML 184
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL + + S+ + F+ G + S ++ D S+G+GFV + E A+ AI
Sbjct: 119 AGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAI 177
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ +G + G+ V V + RA +L + + F + +Y N G +
Sbjct: 178 QKVNGMLLAGKKVFVG-----KFQPRAQRNRELGETAKQFTN----VYVKNFGDHYNKET 228
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L F + S +V+ G+S+GFGFV F E+ ++A+ A++
Sbjct: 229 LEKVFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALH 273
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+ + E E + E+ + + + LYV NL ++ L + F G + SA+++
Sbjct: 290 QKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVM 349
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D RS+GFGFV EEA A+ + + + + V
Sbjct: 350 TDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 389
>gi|396472554|ref|XP_003839148.1| hypothetical protein LEMA_P028210.1 [Leptosphaeria maculans JN3]
gi|312215717|emb|CBX95669.1| hypothetical protein LEMA_P028210.1 [Leptosphaeria maculans JN3]
Length = 379
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+GNL Y +T+ L VF+ G + + +I+YD SRGFG+V ++ +A+ AI
Sbjct: 194 LYIGNLYYEVTADQLQRVFSRFGEIENVKIIYDN-RGLSRGFGYVEFKNIPDAQTAIDNL 252
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK-IYAGNLGWGLTSQGLR 233
D GR + V F E+ G +N+ +SP K ++ GN+ + ++ + L
Sbjct: 253 DMQVFEGRNLVVQFHR-----EKPGFG---KNNRANSTNSPSKTLFIGNMSFEMSDKDLN 304
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
D F+ ++ +V +R TG+ RGF F D+ SA A N
Sbjct: 305 DLFREVRNVVDVRVAIDRRTGQPRGFAHADF---LDIASATHAKN 346
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GN+ + M+ L ++F E V + DR T + RGF + A A +
Sbjct: 289 LFIGNMSFEMSDKDLNDLFREVRNVVDVRVAIDRRTGQPRGFAHADFLDIASATHAKNIL 348
Query: 175 DGSQIGGRTVKVNF 188
+ GR ++++F
Sbjct: 349 ANKVVYGRELRIDF 362
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 90/167 (53%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++T S L + F E V S + D T+ S G+G+V + ++A++A++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ S + G+ +++ + R+ +G ++ NL + ++ L +
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVG---------------NLFVKNLDKSVDNKTLHE 152
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
AF G ++S KV + + G+SRG+GFV F+T + ++A++ +NG V
Sbjct: 153 AFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKV 198
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V NL S+ + +L E F+ GT+ S ++ D + +SRG+GFV + + AK AI
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMG-QSRGYGFVQFDTEDSAKNAIEKL 194
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + + V R ER + K++ + +Y NL T L+
Sbjct: 195 NGKVLNDKQIFVG--PFLRKEERESAADKMKFT---------NVYVKNLSEATTDDELKT 243
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F GQ G +S+ V+ G+SR FGFV FE ED A++A+NG
Sbjct: 244 TF-GQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG 287
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 13/188 (6%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ +EE A + +YV NL + T L F + G+++SA ++ D +SR FG
Sbjct: 210 LRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFG 268
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPH 216
FV + E+A A+ +G + + V + + ER +L Y QG D +
Sbjct: 269 FVNFENPEDAARAVEALNGKKFDDKEWYVG--KAQKKSEREL---ELSRRYEQGSSDGGN 323
Query: 217 K-----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
K +Y NL +T + LR+ F + S KV+ + +G S+G GFV F A +
Sbjct: 324 KFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEAS 382
Query: 272 SALDAMNG 279
L+ MNG
Sbjct: 383 RVLNEMNG 390
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL ++T L E+FAE GT+ S +++ D + S+G GFV + EA
Sbjct: 326 DGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRV 384
Query: 171 IRLFDGSQIGGRTVKV 186
+ +G +GG+ + V
Sbjct: 385 LNEMNGKMVGGKPLYV 400
>gi|412985322|emb|CCO20347.1| predicted protein [Bathycoccus prasinos]
Length = 789
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS-RGFGFVTMGSVEEAK 168
D+ +LYV NLP +T+ L +F + G V + ++V DR S +GF FVT + EA+
Sbjct: 504 DDKNKLYVANLPPHVTNEQLRPIFEKFGRVTACDVVPDRDKQLSCKGFAFVTFATEVEAR 563
Query: 169 EAIRLFDGSQIGGRTVKV---NFPEVP----RGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
AI +G I GR V+ N P+VP GG+ A Q V+ K+Y
Sbjct: 564 SAIPHTNGMTIEGRVVETRIKNEPKVPIHNASGGDTA----------QEDVNEEAKLYVA 613
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL + L+ F + S K++ + TG S+G+GFV E SA+ A++G
Sbjct: 614 NLPSHYEEEDLKTLFSPYGLVQSVKLVLDHTTGLSKGYGFVQMMDQEQAMSAVVAVHG 671
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E A+LYV NLP L +F+ G V S ++V D T S+G+GFV M E+A
Sbjct: 605 NEEAKLYVANLPSHYEEEDLKTLFSPYGLVQSVKLVLDHTTGLSKGYGFVQMMDQEQAMS 664
Query: 170 AIRLFDGSQIGGRT 183
A+ G+ + G T
Sbjct: 665 AVVAVHGNMVEGCT 678
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS-RGFGFVTFETAEDLQ 271
D +K+Y NL +T++ LR F+ + + V+ +R S +GF FVTF T + +
Sbjct: 504 DDKNKLYVANLPPHVTNEQLRPIFEKFGRVTACDVVPDRDKQLSCKGFAFVTFATEVEAR 563
Query: 272 SALDAMNGV 280
SA+ NG+
Sbjct: 564 SAIPHTNGM 572
>gi|356515764|ref|XP_003526568.1| PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic-like [Glycine
max]
Length = 315
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 99/194 (51%), Gaps = 19/194 (9%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEI-VYDR 148
E++ EE V EEE + RL N+P++ T + +F + G V E+ +Y +
Sbjct: 72 EQQTEEPLVSEEEFSRT-------RLLAQNVPWTSTPEDIRTLFEKHGKVLEVELSMYKK 124
Query: 149 VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+R+RG FV MGS EEA EA+ + + GR +KVN+ R + P ++
Sbjct: 125 --NRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNY---ARPKKEKTAPPPVKPKV 179
Query: 209 QGFVDSPHKIYAGNLGWGLTSQGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETA 267
F ++ NL + +S+ L++ F G ++SA+V++ R G+GFV+F++
Sbjct: 180 VTF-----NLFVANLSYEASSKDLKEFFDLGTGRVVSAEVVYRDNPRRPSGYGFVSFKSK 234
Query: 268 EDLQSALDAMNGVV 281
++ ++AL G V
Sbjct: 235 KEAEAALAEFQGKV 248
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+PKV + L+V NL Y +S L E F G V SAE+VY R G+GFV+
Sbjct: 176 KPKVVTFN----LFVANLSYEASSKDLKEFFDLGTGRVVSAEVVYRDNPRRPSGYGFVSF 231
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVN 187
S +EA+ A+ F G GR ++V+
Sbjct: 232 KSKKEAEAALAEFQGKVFMGRPIRVD 257
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ A LYVG +P S+T ++F G V A + R + +G V + A A
Sbjct: 684 DMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMF------RFQRYGMVRFDNPSCAAAA 737
Query: 171 IRLFDGSQIGGRTVKVNFPEVP--RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
I DG QIGG + V +P + A+ ++ ++ QG +D + +Y +L +
Sbjct: 738 IDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTN-LYVSHLPSYVN 796
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ L D F + AKV+ ERYTG S+GFGFV F A AL MNG
Sbjct: 797 NERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNG 847
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 33/219 (15%)
Query: 74 GFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVF 133
GF +ED+ +P E + A+LYV NL SM + L +F
Sbjct: 370 GFPSSEDNSQQPSKETD---------------------MAKLYVCNLSLSMNTDRLIHLF 408
Query: 134 AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193
G V +A++ D T S+G+GFV S A EA+ +G + GR ++V +P
Sbjct: 409 LPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPS 468
Query: 194 GGERAAMGPKLQNSYQGFVDSP-----------HKIYAGNLGWGLTSQGLRDAFQGQPGL 242
+A+ + V+SP +Y N+ + ++ L + F +
Sbjct: 469 TLPNSAVESP-STTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKI 527
Query: 243 LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
A+V+ + T ++G+GF+ F +E A+ AMNG +
Sbjct: 528 THARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGAL 566
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLP S+ S L E+F G + + +V D T S+G+GFV A EAI+
Sbjct: 295 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 354
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + G +KV P E + P + K+Y NL + + L
Sbjct: 355 NGRLVEGTALKVRVTGFP-SSEDNSQQPSKETDMA-------KLYVCNLSLSMNTDRLIH 406
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + +AKV + TG S+G+GFV + + A+ +NG
Sbjct: 407 LFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNG 451
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 87 TEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
E AVE + + + LYV N+P S+ + L E+F G + A +V
Sbjct: 475 VESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVA 534
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D T ++G+GF+ E A +AI +G+ +GG + V
Sbjct: 535 DPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV 574
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV +LP + + L ++F G + A++V +R T S+GFGFV A A
Sbjct: 782 DMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 841
Query: 171 IRLFDGSQIGGRTVKV 186
+ +G + G ++V
Sbjct: 842 LTHMNGYPLDGHVLEV 857
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+RLY+ NLP SMT+ + +FA G + + + + V A +A++
Sbjct: 597 SRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE--------YSLVWYADAPSATKAVQ 648
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
DG + G+ + V E+ A G ++ +D + +Y G + LT
Sbjct: 649 HMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKE-----IDMAN-LYVGRVPSSLTEDQF 702
Query: 233 RDAFQGQPGLLSAKVI-FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F+ ++ A++ F+RY G V F+ +A+D ++G
Sbjct: 703 IDLFRPFGRVVQARMFRFQRY-------GMVRFDNPSCAAAAIDHLDG 743
>gi|50305507|ref|XP_452713.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641846|emb|CAH01564.1| KLLA0C11495p [Kluyveromyces lactis]
Length = 445
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 12/192 (6%)
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR 152
+++E E ++PK + E A ++VG L +S+ L F G V SA ++Y+R TDR
Sbjct: 176 DDDEEKSESKKPKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDR 235
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGF 211
SRG+G+V A++AI+ G +I GR + + P G R K F
Sbjct: 236 SRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKK-------F 288
Query: 212 VDSPHK----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267
D P + ++ GNL + L + F ++S ++ T + +GFG+V + +
Sbjct: 289 GDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSI 348
Query: 268 EDLQSALDAMNG 279
ED A + + G
Sbjct: 349 EDATKAFEGLQG 360
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S+ + L++GNL + +L E+F + G + S I T++ +GFG+V GS+E+A
Sbjct: 293 SEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDAT 352
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
+A G I R V++++ +P+
Sbjct: 353 KAFEGLQGEYINNRPVRLDY-SIPK 376
>gi|46806499|dbj|BAD17623.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|46806518|dbj|BAD17631.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
Length = 374
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
++ + D + +++VG + + T S ++ F + G + + I+ D+ T RGFGFVT
Sbjct: 55 DDGRAPGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTF 114
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ + D I GRTV+V VPR + GPK + KI+ G
Sbjct: 115 SDPSVIDKVLE--DEHVIDGRTVEVK-RTVPREEMSSKDGPKTR-----------KIFVG 160
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
L LT LR+ F ++ +++ + TGRSRGFGFVTFE+ + ++ +
Sbjct: 161 GLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVI 213
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG LP S+T L E F+ G + +I+ D T RSRGFGFVT S + + I
Sbjct: 156 KIFVGGLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISE 215
Query: 174 FDGSQIGGRTVKVNFPEVPRGG 195
+GG+ V++ E + G
Sbjct: 216 GRMRDLGGKQVEIKKAEPKKHG 237
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
DS KI+ G + W T + F+ + + ++ +++T RGFGFVTF +
Sbjct: 63 DSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDK 122
Query: 273 ALD 275
L+
Sbjct: 123 VLE 125
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G VAS + D VT RS G+ +V S + ++A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 118 EELNYTLIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDVAIDNKA 162
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + G S+G+GFV +ET E A+ +NG++
Sbjct: 163 LHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHVNGML 211
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A +AI+
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHV 207
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + +P+ ++ K + F + +Y N+G +T R+
Sbjct: 208 NGMLLNEKKVYVGY-HIPKKDRQS----KFEEMKANFTN----VYVKNIGPDVTDDEFRE 258
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F+ + G +++ + G+ RGFGFV F T E A++ +NG
Sbjct: 259 LFE-KFGDVTSSSLARDQEGKPRGFGFVNFTTHEAAFKAVEDLNG 302
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 53/211 (25%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T E+F + G V S+ + D+ + RGFGFV + E A +A+
Sbjct: 242 VYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQ-EGKPRGFGFVNFTTHEAAFKAVEDL 300
Query: 175 DGSQIGGRTVKVNFPEVPRGGE----RAAMGPKLQ--NSYQGFVDSPHKIYAGNLGWGLT 228
+G G+ + V + E ++ +L+ N YQG +Y NL +
Sbjct: 301 NGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGV-----NLYIKNLDDDVD 355
Query: 229 SQGLRDAFQGQPGLLSAKVIFE-------------------------------------- 250
+ LR F + SAKV+ +
Sbjct: 356 DEKLRQMFAEFGPITSAKVMRDTPQEGEEEVKDQEKDKENQKEAENEAESAESAEKKAEK 415
Query: 251 ---RYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ G+S+GFGFV F +D A+ MN
Sbjct: 416 KSDKKLGKSKGFGFVCFSNPDDATKAVAEMN 446
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G VAS + D VT RS G+ +V S + ++A+
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 118
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 119 EELNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDVAIDNKA 163
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + G S+G+GFV +ET E A+ +NG++
Sbjct: 164 LHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAHQAIKHVNGML 212
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A +AI+
Sbjct: 150 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAHQAIKHV 208
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K + F + IY N+ + R+
Sbjct: 209 NGMLLNEKKVYVGH-HIPKKDRQS----KFEEMKANFTN----IYVKNISTEASDDEFRE 259
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F+ + G +++ + G+SRGFGFV F T E A++ ++G
Sbjct: 260 LFE-KYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELHG 303
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 12/140 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ + E+F + G + S+ + D+ +SRGFGFV + E A +A+
Sbjct: 243 IYVKNISTEASDDEFRELFEKYGDITSSSLARDQ-EGKSRGFGFVNFTTHESAAKAVEEL 301
Query: 175 DGSQIGGRTVKVNFPEVPRGGE----RAAMGPKLQ--NSYQGFVDSPHKIYAGNLGWGLT 228
G G+ + V + E ++ +L+ N YQG +Y NL +
Sbjct: 302 HGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV-----NLYIKNLDDDVD 356
Query: 229 SQGLRDAFQGQPGLLSAKVI 248
+ LR F + SAKV+
Sbjct: 357 DEKLRQMFAEFGPITSAKVM 376
>gi|21750187|dbj|BAC03738.1| unnamed protein product [Homo sapiens]
Length = 687
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 459 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 514
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +IGGR +++ + PRG A P ++ L T
Sbjct: 515 EALNSCNKREIGGRAIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 561
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 562 EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 607
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 34/178 (19%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A L NLPY +T L EVF +A AEI +S+G ++ + +A++
Sbjct: 368 DARTLLAKNLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKT 422
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-SYQGFVDS-----PHKIYAGNLG 224
G++I GR++ + + G K QN Y+G +S + NL
Sbjct: 423 FEEKQGTEIDGRSISLYY-----------TGEKGQNQDYRGGKNSTWSGESKTLVLSNLS 471
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ T + L++ F+ K F + G+S+G+ F+ F + ED + AL++ N
Sbjct: 472 YSATEETLQEVFE--------KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 521
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 543 ARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEED 599
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 600 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 626
>gi|407940456|ref|YP_006856097.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407898250|gb|AFU47459.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 116
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++++YVGNLPYS+T ++L FAE G V+SA+++ DR T RS+GFGFV M + E A+ AI
Sbjct: 2 SSKIYVGNLPYSVTDATLESNFAEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAI 61
Query: 172 RLFDGSQIGGRTVKVNFPEVPR 193
R G + GR++ VN PR
Sbjct: 62 RALHGMSVDGRSIVVNLAR-PR 82
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
KIY GNL + +T L F G+ SAKV+ +R TGRS+GFGFV AE Q+A+ A
Sbjct: 4 KIYVGNLPYSVTDATLESNFAEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAIRA 63
Query: 277 MNGV 280
++G+
Sbjct: 64 LHGM 67
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A+
Sbjct: 50 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 109
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I G+ ++ + + P L+ + QG ++ NL + ++
Sbjct: 110 EDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIKNLDSAIDNKA 154
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 155 LHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGML 203
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 199
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K F + IY N+ +T + R
Sbjct: 200 NGMLLNDKKVFVGH-HISKKDRQS----KFDEMKANFTN----IYIKNIDPDVTEEEFRK 250
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ Q G +++ + G+SRGFGFV + T E Q+A+D M+
Sbjct: 251 IFE-QFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMH 293
>gi|255645618|gb|ACU23303.1| unknown [Glycine max]
Length = 315
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 99/194 (51%), Gaps = 19/194 (9%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEI-VYDR 148
E++ EE V EEE + RL N+P++ T + +F + G V E+ +Y +
Sbjct: 72 EQQTEEPLVSEEEFSRT-------RLLAQNVPWTSTPEDIRTLFEKHGKVLEVELSMYKK 124
Query: 149 VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+R+RG FV MGS EEA EA+ + + GR +KVN+ R + P ++
Sbjct: 125 --NRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNY---ARPKKEKTAPPPVKPKV 179
Query: 209 QGFVDSPHKIYAGNLGWGLTSQGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETA 267
F ++ NL + +S+ L++ F G ++SA+V++ R G+GFV+F++
Sbjct: 180 VTF-----NLFVANLSYEASSKDLKEFFDLGTGRVVSAEVVYRDNPRRPSGYGFVSFKSK 234
Query: 268 EDLQSALDAMNGVV 281
++ ++AL G V
Sbjct: 235 KEAEAALAEFQGKV 248
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+PKV + L+V NL Y +S L E F G V SAE+VY R G+GFV+
Sbjct: 176 KPKVVTFN----LFVANLSYEASSKDLKEFFDLGTGRVVSAEVVYRDNPRRPSGYGFVSF 231
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVN 187
S +EA+ A+ F G GR ++V+
Sbjct: 232 KSKKEAEAALAEFQGKVFMGRPIRVD 257
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ A LYVG +P S+T ++F G V A + R + +G V + A A
Sbjct: 687 DMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMF------RFQRYGMVRFDNPSCAAAA 740
Query: 171 IRLFDGSQIGGRTVKVNFPEVP--RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
I DG QIGG + V +P + A+ ++ ++ QG +D + +Y +L +
Sbjct: 741 IDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTN-LYVSHLPSYVN 799
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ L D F + AKV+ ERYTG S+GFGFV F A AL MNG
Sbjct: 800 NERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNG 850
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 33/227 (14%)
Query: 66 RQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMT 125
R GF +ED+ +P E + A+LYV NL SM
Sbjct: 365 RALEVRVAGFPSSEDNSQQPSKETD---------------------MAKLYVCNLSLSMN 403
Query: 126 SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185
+ L +F G V +A++ D T S+G+GFV S A EA+ +G + GR ++
Sbjct: 404 TDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIE 463
Query: 186 VNFPEVPRGGERAAMGPKLQNSYQGFVDSP-----------HKIYAGNLGWGLTSQGLRD 234
V +P +A+ + V+SP +Y N+ + ++ L +
Sbjct: 464 VRVSGIPSTLPNSAVESP-STTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVE 522
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F + A+V+ + T ++G+GF+ F +E A+ AMNG +
Sbjct: 523 LFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGAL 569
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 8/165 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLP S+ S L E+F G + + +V D T S+G+GFV A EAI+
Sbjct: 298 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 357
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + GR ++V P E + P + K+Y NL + + L
Sbjct: 358 NGRLVEGRALEVRVAGFP-SSEDNSQQPSKETDMA-------KLYVCNLSLSMNTDRLIH 409
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + +AKV + TG S+G+GFV + + A+ +NG
Sbjct: 410 LFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNG 454
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 87 TEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
E AVE + + + LYV N+P S+ + L E+F G + A +V
Sbjct: 478 VESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVA 537
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D T ++G+GF+ E A +AI +G+ +GG + V
Sbjct: 538 DPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV 577
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV +LP + + L ++F G + A++V +R T S+GFGFV A A
Sbjct: 785 DMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 844
Query: 171 IRLFDGSQIGGRTVKV 186
+ +G + G ++V
Sbjct: 845 LTHMNGYPLDGHVLEV 860
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+RLY+ NLP SMT+ + +FA G + + + + V A +A++
Sbjct: 600 SRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE--------YSLVWYADAPSATKAVQ 651
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
DG + G+ + V E+ A G ++ +D + +Y G + LT
Sbjct: 652 HMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKE-----IDMAN-LYVGRVPSSLTEDQF 705
Query: 233 RDAFQGQPGLLSAKVI-FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F+ ++ A++ F+RY G V F+ +A+D ++G
Sbjct: 706 IDLFRPFGRVVQARMFRFQRY-------GMVRFDNPSCAAAAIDHLDG 746
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V + + ++A+
Sbjct: 61 SASLYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKAL 120
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 121 EELNYTLIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDTAIDNKA 165
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + TG S+G+GFV +ET E A+ +NG++
Sbjct: 166 LHDTFAAFGNILSCKVAQDE-TGASKGYGFVHYETDEAASQAIKHVNGML 214
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D T S+G+GFV + E A +AI+
Sbjct: 152 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDE-TGASKGYGFVHYETDEAASQAIKHV 210
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K + F + IY N+ T + R+
Sbjct: 211 NGMLLNEKKVFVGH-HIPKKDRQS----KFEEMKANFTN----IYVKNIPVEATDEEFRE 261
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F+ + SA + + + +SRGFGFV F E A+D +NG
Sbjct: 262 LFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDELNG 306
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 53/212 (25%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+P T E+F + G V SA + D +++SRGFGFV + E A +A+
Sbjct: 245 IYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDEL 304
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+G G+ + V R ++ +L+ SY+ ++ K +Y NL +
Sbjct: 305 NGKDFKGQDLYVG-----RAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVD 359
Query: 229 SQGLRDAFQGQPGLLSAKVIFE-------------------------------------- 250
LR+ F + SAKV+ +
Sbjct: 360 DDKLRELFTPFGSITSAKVMRDTPAETAEAEEKEKKDSEKNKENIKEGETAEAENTEDKP 419
Query: 251 ----RYTGRSRGFGFVTFETAEDLQSALDAMN 278
R G+S+GFGFV F E+ A+ MN
Sbjct: 420 KSEKRTVGKSKGFGFVCFNNPEEASKAVTDMN 451
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ A LYVG +P S+T ++F G V A + R + +G V + A A
Sbjct: 677 DMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMF------RFQRYGMVRFDNPSCAAAA 730
Query: 171 IRLFDGSQIGGRTVKVNFPEVP--RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
I DG QIGG + V +P + A+ ++ ++ QG +D + +Y +L +
Sbjct: 731 IDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTN-LYVSHLPSYVN 789
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ L D F + AKV+ ERYTG S+GFGFV F A AL MNG
Sbjct: 790 NERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNG 840
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 95/217 (43%), Gaps = 24/217 (11%)
Query: 66 RQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMT 125
R GF +ED+ +P E + A+LYV NL SM
Sbjct: 366 RALEVRVAGFPSSEDNSQQPSKETD---------------------MAKLYVCNLSLSMN 404
Query: 126 SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185
+ L +F G V +A++ D T S+G+GFV S A EA+ +G + GR ++
Sbjct: 405 TDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIE 464
Query: 186 VNFPEVPRGGERAAM-GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS 244
V +P +A+ P + + S +Y N+ + ++ L + F +
Sbjct: 465 VRVSGIPSTLPNSAVESPSTTRTVKEIDMS--NLYVCNMPSSIDTKKLVELFLPFGKITH 522
Query: 245 AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
A+V+ + T ++G+GF+ F +E A+ AMNG +
Sbjct: 523 ARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGAL 559
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 8/165 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLP S+ S L E+F G + + +V D T S+G+GFV A EAI+
Sbjct: 299 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 358
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + GR ++V P E + P + K+Y NL + + L
Sbjct: 359 NGRLVEGRALEVRVAGFP-SSEDNSQQPSKETDMA-------KLYVCNLSLSMNTDRLIH 410
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + +AKV + TG S+G+GFV + + A+ +NG
Sbjct: 411 LFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNG 455
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 97 AVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF 156
AVE + + + LYV N+P S+ + L E+F G + A +V D T ++G+
Sbjct: 478 AVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGY 537
Query: 157 GFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
GF+ E A +AI +G+ +GG + V
Sbjct: 538 GFIKFTDSESATKAIAAMNGALVGGEMIIV 567
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV +LP + + L ++F G + A++V +R T S+GFGFV A A
Sbjct: 775 DMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 834
Query: 171 IRLFDGSQIGGRTVKVNFPEV 191
+ +G + G ++V V
Sbjct: 835 LTHMNGYPLDGHVLEVRIAGV 855
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+RLY+ NLP SMT+ + +FA G + + + + V A +A++
Sbjct: 590 SRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE--------YSLVWYADAPSAIKAVQ 641
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
DG + G+ + V E+ A G ++ +D + +Y G + LT
Sbjct: 642 HMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKE-----IDMAN-LYVGRVPSSLTEDQF 695
Query: 233 RDAFQGQPGLLSAKVI-FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F+ ++ A++ F+RY G V F+ +A+D ++G
Sbjct: 696 IDLFRPFGRVVQARMFRFQRY-------GMVRFDNPSCAAAAIDHLDG 736
>gi|212412|gb|AAA48983.1| nucleolin/C23, partial [Gallus gallus]
Length = 288
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 18/180 (10%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
++E K E+ L V NL Y+ + +L E+F +A ++ + R +G+ FV
Sbjct: 42 QQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFV 97
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHK 217
+ E+AKEA+ + ++I GR +++ F P +G N+ GF
Sbjct: 98 EFPTAEDAKEALNSCNTTEIEGRAIRLEFSSPSWQKGN---------MNARGGFNQQSKT 148
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
++ L T + LR++F+G +SA+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 149 LFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 205
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V L T +L E F G++ SA IV DR T S+GFGFV S E+AK A
Sbjct: 149 LFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 205
Query: 175 DGSQIGGRTVKVNFPEVPRG 194
+ +I G V ++F + P+G
Sbjct: 206 EDGEIDGNKVTLDFAK-PKG 224
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFV 212
S+G ++ + EA++A+ G+++ GR + +++ GE++ Q S +G
Sbjct: 1 SKGMAYIEFKTEREAEKALEEKQGTEVDGRAMVIDYT-----GEKSQ-----QESQKGGG 50
Query: 213 DSPHK-IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
+ K + NL + + + L++ F+ + + + GR +G+ FV F TAED +
Sbjct: 51 ERESKTLIVNNLSYAASEETLQELFKKATSI----KMPQNNQGRPKGYAFVEFPTAEDAK 106
Query: 272 SALDAMN 278
AL++ N
Sbjct: 107 EALNSCN 113
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A+D MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGML 162
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 MFGKYGPALSVKVMTDD-SGKSKGFGFVSFERHEDAQKAVDDMNG 253
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDD-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKV-NFPEVPRGGERAAMGPKLQNS----YQGFVDSPHKIYAG 221
A++A+ +G + G+ + V +V R E +++ YQG +Y
Sbjct: 244 AQKAVDDMNGKDMNGKAIYVGRAKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVK 298
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
NL G+ + LR F + SAKV+ E GRS+GFGFV F + + S
Sbjct: 299 NLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSYMQRMAS 347
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ A LYVG +P S+T ++F G V A + R + +G V + A A
Sbjct: 589 DMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMF------RFQRYGMVRFDNPSCAAAA 642
Query: 171 IRLFDGSQIGGRTVKVNFPEVP--RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
I DG QIGG + V +P + A+ ++ ++ QG +D + +Y +L +
Sbjct: 643 IDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTN-LYVSHLPSYVN 701
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ L D F + AKV+ ERYTG S+GFGFV F A AL MNG
Sbjct: 702 NERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNG 752
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 95/217 (43%), Gaps = 24/217 (11%)
Query: 66 RQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMT 125
R GF +ED+ +P E + A+LYV NL SM
Sbjct: 278 RALEVRVAGFPSSEDNSQQPSKETD---------------------MAKLYVCNLSLSMN 316
Query: 126 SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185
+ L +F G V +A++ D T S+G+GFV S A EA+ +G + GR ++
Sbjct: 317 TDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIE 376
Query: 186 VNFPEVPRGGERAAM-GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS 244
V +P +A+ P + + S +Y N+ + ++ L + F +
Sbjct: 377 VRVSGIPSTLPNSAVESPSTTRTVKEIDMS--NLYVCNMPSSIDTKKLVELFLPFGKITH 434
Query: 245 AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
A+V+ + T ++G+GF+ F +E A+ AMNG +
Sbjct: 435 ARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGAL 471
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 8/165 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLP S+ S L E+F G + + +V D T S+G+GFV A EAI+
Sbjct: 211 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 270
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + GR ++V P E + P + K+Y NL + + L
Sbjct: 271 NGRLVEGRALEVRVAGFP-SSEDNSQQPSKETDMA-------KLYVCNLSLSMNTDRLIH 322
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + +AKV + TG S+G+GFV + + A+ +NG
Sbjct: 323 LFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNG 367
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 97 AVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF 156
AVE + + + LYV N+P S+ + L E+F G + A +V D T ++G+
Sbjct: 390 AVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGY 449
Query: 157 GFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
GF+ E A +AI +G+ +GG + V
Sbjct: 450 GFIKFTDSESATKAIAAMNGALVGGEMIIV 479
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV +LP + + L ++F G + A++V +R T S+GFGFV A A
Sbjct: 687 DMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 746
Query: 171 IRLFDGSQIGGRTVKVNFPEV 191
+ +G + G ++V V
Sbjct: 747 LTHMNGYPLDGHVLEVRIAGV 767
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+RLY+ NLP SMT+ + +FA G + + + + V A +A++
Sbjct: 502 SRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE--------YSLVWYADAPSAIKAVQ 553
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
DG + G+ + V E+ A G ++ +D + +Y G + LT
Sbjct: 554 HMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKE-----IDMAN-LYVGRVPSSLTEDQF 607
Query: 233 RDAFQGQPGLLSAKVI-FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F+ ++ A++ F+RY G V F+ +A+D ++G
Sbjct: 608 IDLFRPFGRVVQARMFRFQRY-------GMVRFDNPSCAAAAIDHLDG 648
>gi|328851168|gb|EGG00325.1| hypothetical protein MELLADRAFT_28015 [Melampsora larici-populina
98AG31]
Length = 223
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 22/163 (13%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL + L +F++A V +A + DR+T + RG+G+V+ + EEA A+R F
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF---VDSPHKIYAGNLGWGLTSQG 231
+ + G+ ++V SY G S ++ NL T
Sbjct: 62 NHINLKGKPIRV------------------MRSYSGKPKEFPSEANLFIKNLPKSFTPIN 103
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
L D+F+ +LS+K+ F++ G S+G+G++ FE +D A+
Sbjct: 104 LHDSFERFGKILSSKISFDQ-LGNSKGYGYIQFENPKDSNEAI 145
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y GNL + Q L + F +++A+V +R T + RG+G+V++ T E+ AL
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 278 NGV 280
N +
Sbjct: 62 NHI 64
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ S +L + F+ G + S ++ D SRGFGFV + E A++AI
Sbjct: 101 VFIKNLEDSIDSKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETNEAAQQAISTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R ER A +L F + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFKSHR--EREA---ELGAQALAFTN----IYVKNLHVDMDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ + +G SRGFGFV FE E+ Q A+D MNG
Sbjct: 210 LFFEFGKMLSVKVMRDN-SGHSRGFGFVNFEKHEEAQKAVDHMNG 253
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 18/175 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL M L ++F E G + S +++ D + SRGFGFV EEA++A+
Sbjct: 193 IYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDN-SGHSRGFGFVNFEKHEEAQKAVDHM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERA--------AMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+G ++ G+ + V + + GER M Q YQG +Y NL
Sbjct: 252 NGKEVSGQQLYVGRAQ--KRGERQNELKRRFEQMKQDRQTRYQGV-----NLYVKNLDDS 304
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
++ + LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG +
Sbjct: 305 ISDEKLRTVFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGCI 357
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +T + L E F+ G + S + D T RS G+ ++ +A+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ I G+ +++ + + G ++ +G ++ NL + S+ L D
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVG---------------NVFIKNLEDSIDSKALYD 117
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + + SRGFGFV FET E Q A+ MNG++
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETNEAAQQAISTMNGML 162
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL S++ L VF+ G + SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G +G + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGCIVGTKPLYVALAQ--RKEERKAI---LTNQY 382
>gi|240278920|gb|EER42426.1| ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325090181|gb|EGC43491.1| ribonucleoprotein [Ajellomyces capsulatus H88]
Length = 472
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 7/176 (3%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S+E L++GNL +++ L F E G +A IV DR + RSRGFG+V + +A
Sbjct: 227 SNEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSGRSRGFGYVEFTNAADAA 286
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLG 224
+A +++ GR + V+F G AA + Q+ Q F D SP ++ GN+
Sbjct: 287 KAHAAKKDAELDGRKLNVDFAN---GRSNAAPKERAQSRAQNFGDQTSPESDTLFIGNIA 343
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ + +AF +L ++ + +GR +GFG+V F + ++ +SA A+NG
Sbjct: 344 FSANENMISEAFAEHGSILGVRLPTDPESGRPKGFGYVQFSSVDEARSAFQALNGA 399
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 52/80 (65%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L++GN+ +S + ++E FAE G++ + D + R +GFG+V SV+EA+
Sbjct: 331 SPESDTLFIGNIAFSANENMISEAFAEHGSILGVRLPTDPESGRPKGFGYVQFSSVDEAR 390
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
A + +G+ +GGR+++++F
Sbjct: 391 SAFQALNGADLGGRSMRLDF 410
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M + L E+F+ G S +++ D T RS+GFGFV EE
Sbjct: 185 ARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEE 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
A++A+ +G +I GR V V E+ R E+ M + + YQG +
Sbjct: 244 AQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQ--MKQERVSRYQGV-----NL 296
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL G+ + LR F + SAKV+ E G S+GFGFV F + E+ A+ MN
Sbjct: 297 YVKNLDDGIDDERLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 279 GVV 281
G +
Sbjct: 355 GRI 357
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D + RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR V++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVG---------------NVFIKNLDDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + SRG GFV FET E A+ MNG++
Sbjct: 116 YDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQTMNGML 162
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + SRG GFV + E A AI+
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQTM 158
Query: 175 DGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + R V V R E A + N +Y N G + L
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTN-----------VYIKNFGDDMDDNRL 207
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
R+ F LS KV+ + +TGRS+GFGFV FE E+ Q A+ MNG
Sbjct: 208 REIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNG 253
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIVSTKPLYVALAQ--RKEERKAI---LTNQY 382
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ A LYVG +P S+T ++F G V A + R + +G V + A A
Sbjct: 600 DMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMF------RFQRYGMVRFDNPSCAAAA 653
Query: 171 IRLFDGSQIGGRTVKVNFPEVP--RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
I DG QIGG + V +P + A+ ++ ++ QG +D + +Y +L +
Sbjct: 654 IDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTN-LYVSHLPSYVN 712
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ L D F + AKV+ ERYTG S+GFGFV F A AL MNG
Sbjct: 713 NERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNG 763
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 12/182 (6%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ A+LYV NL SM + L +F G V +A++ D T S+G+GFV S A EA
Sbjct: 302 DMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEA 361
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-----------HKIY 219
+ +G + GR ++V +P +A+ + V+SP +Y
Sbjct: 362 VIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESP-STTRNSAVESPSTTRTVKEIDMSNLY 420
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
N+ + ++ L + F + A+V+ + T ++G+GF+ F +E A+ AMNG
Sbjct: 421 VCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNG 480
Query: 280 VV 281
+
Sbjct: 481 AL 482
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLP S+ S L E+F G + + +V D T S+G+GFV A EAI+
Sbjct: 211 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 270
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + G +KV P E + P + K+Y NL + + L
Sbjct: 271 NGRLVEGTALKVRVTGFP-SSEDNSQQPSKETDMA-------KLYVCNLSLSMNTDRLIH 322
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + +AKV + TG S+G+GFV + + A+ +NG
Sbjct: 323 LFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNG 367
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 97 AVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF 156
AVE + + + LYV N+P S+ + L E+F G + A +V D T ++G+
Sbjct: 401 AVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGY 460
Query: 157 GFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
GF+ E A +AI +G+ +GG + V
Sbjct: 461 GFIKFTDSESATKAIAAMNGALVGGEMIIV 490
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV +LP + + L ++F G + A++V +R T S+GFGFV A A
Sbjct: 698 DMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 757
Query: 171 IRLFDGSQIGGRTVKVNFPEV 191
+ +G + G ++V V
Sbjct: 758 LTHMNGYPLDGHVLEVRIAGV 778
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+RLY+ NLP SMT+ + +FA G + + + + V A +A++
Sbjct: 513 SRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE--------YSLVWYADAPSATKAVQ 564
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
DG + G+ + V E+ A G ++ +D + +Y G + LT
Sbjct: 565 HMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKE-----IDMAN-LYVGRVPSSLTEDQF 618
Query: 233 RDAFQGQPGLLSAKVI-FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F+ ++ A++ F+RY G V F+ +A+D ++G
Sbjct: 619 IDLFRPFGRVVQARMFRFQRY-------GMVRFDNPSCAAAAIDHLDG 659
>gi|391337396|ref|XP_003743055.1| PREDICTED: uncharacterized protein LOC100908642 [Metaseiulus
occidentalis]
Length = 543
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +YVG L ++ + L E+F +AG + S + DR+T +G+GFV E
Sbjct: 6 IAERNQDATIYVGGLDEKVSDNLLWELFVQAGPIVSVHMPKDRITGLHQGYGFVEFLGEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ V+VN +++Q +D I+ GNL
Sbjct: 66 DADYAIKVMNMIKLYGKPVRVN----------------KASAHQKNLDVGANIFIGNLDP 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG S+GF FV F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFVNFASFEASDAAIDAMNG 164
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVA-SAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A +++GNL + L + F+ G + + +I+ D T S+GF FV S E +
Sbjct: 97 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFVNFASFEASD 156
Query: 169 EAIRLFDGSQIGGRTVKVN--FPEVPRGGERAAMGPKL---QNSYQGFVDSPHKIYA 220
AI +G + R + ++ F + +G + +L QN D PH+++A
Sbjct: 157 AAIDAMNGQYLCNRAISISYAFKKDSKGERHGSAAERLLAAQNPLS-IGDRPHQLFA 212
>gi|224082053|ref|XP_002306558.1| predicted protein [Populus trichocarpa]
gi|222856007|gb|EEE93554.1| predicted protein [Populus trichocarpa]
Length = 309
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 107/217 (49%), Gaps = 27/217 (12%)
Query: 65 FRQFSASF-----DGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGN 119
FR F F D V S D+ TE + + EE+ EEE K RL+ N
Sbjct: 61 FRHFLLHFSSTTQDHPVVDSSSLDDVVTEYQSKAEEK---EEEFSKT-------RLFASN 110
Query: 120 LPYSMTSSSLAEVFAEAGTVASAEI-VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178
+P++ T+ + +F + GTV E+ +Y ++ R+RG FVTMGS EEA A+ + +
Sbjct: 111 VPWNCTAEDIRALFQKFGTVVDVELSMYSKI--RNRGLAFVTMGSPEEAVAALNNLESYE 168
Query: 179 IGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQG 238
GRT+K+N+ + + PK ++ FV NL + S+ L++ F
Sbjct: 169 FEGRTLKMNYAKAKKKKPSPPPPPKPGPTFNLFV--------ANLPFEAKSKDLKEFFIA 220
Query: 239 Q-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+ ++SA++IF R G+GFV F+T ++ A+
Sbjct: 221 EGANVVSAEIIFHDNPRRPSGYGFVAFKTKKEADYAI 257
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
L+V NLP+ S L E F AE V SAEI++ R G+GFV + +EA AI
Sbjct: 200 LFVANLPFEAKSKDLKEFFIAEGANVVSAEIIFHDNPRRPSGYGFVAFKTKKEADYAIST 259
Query: 174 FDGSQIGGRTVKV 186
F + GR ++V
Sbjct: 260 FSDKEFMGRQLRV 272
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V S + ++A+
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 122
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 123 EELNYTLIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDTAIDNKA 167
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + G S+G+GFV +ET E A+ +NG++
Sbjct: 168 LHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHVNGML 216
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 85/165 (51%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A +AI+
Sbjct: 154 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHV 212
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + +P+ +R + +++ +Y +Y N+ +T + R+
Sbjct: 213 NGMLLNEKKVYVGY-HIPKK-DRQSKFEEMKANYT-------NVYVKNINLEVTEEEFRE 263
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + G +++ + G+SRGFGFV F T + A++ +NG
Sbjct: 264 LFS-KYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAVEELNG 307
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T E+F++ G V S+ + D+ +SRGFGFV + + A +A+
Sbjct: 247 VYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQ-EGKSRGFGFVNFSTHDSAAKAVEEL 305
Query: 175 DGSQIGGRTVKVNFP-------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+G + G+ + V E R AA K N YQG +Y NL +
Sbjct: 306 NGKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKA-NKYQGV-----NLYIKNLADDI 359
Query: 228 TSQGLRDAFQGQPGLLSAKVI 248
LR F + SAKV+
Sbjct: 360 DDDKLRQMFSEFGPITSAKVM 380
>gi|195628644|gb|ACG36152.1| heterogeneous nuclear ribonucleoprotein A3 [Zea mays]
Length = 384
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E+ + A D +++VG + + T S ++ F + G + + I+ D+ T RGFGFVT
Sbjct: 44 EDGRGAGGDSLGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTF 103
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ L D I GRTV+V VPR GPK + KI+ G
Sbjct: 104 SDPSVIDKV--LEDDHVIDGRTVEVKRT-VPREEMITKDGPKTR-----------KIFIG 149
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
L LT L+D F ++ +++ + TGRSRGFGFVTFE+ + ++ +
Sbjct: 150 GLPPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFVTFESEDSVERVI 202
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++++G LP S+T L + F+ G V +I+ D T RSRGFGFVT S + + I
Sbjct: 145 KIFIGGLPPSLTEDELKDHFSSYGNVVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISE 204
Query: 174 FDGSQIGGRTVKVNFPEVPRGG 195
+GG+ V++ E + G
Sbjct: 205 GRMRDLGGKQVEIKKAEPKKHG 226
>gi|293336544|ref|NP_001168743.1| uncharacterized protein LOC100382538 [Zea mays]
gi|223972773|gb|ACN30574.1| unknown [Zea mays]
gi|413936749|gb|AFW71300.1| hypothetical protein ZEAMMB73_007301 [Zea mays]
gi|413936750|gb|AFW71301.1| hypothetical protein ZEAMMB73_007301 [Zea mays]
Length = 384
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E+ + A D + +++VG + + T S ++ F + G + + I+ D+ T RGFGFVT
Sbjct: 44 EDVRGAGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTF 103
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ L D I GRTV+V VPR GPK + KI+ G
Sbjct: 104 SDPSVIDKV--LEDEHVIDGRTVEVKRT-VPREEMNTKDGPKTR-----------KIFIG 149
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
L LT L+D F +L +++ + TGRSRGFGFVTFE+ + ++ +
Sbjct: 150 GLPASLTEDELKDHFSLYGKVLEHQIMLDHSTGRSRGFGFVTFESEDSVERVI 202
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
EE + ++++G LP S+T L + F+ G V +I+ D T RSRGFGFVT
Sbjct: 133 EEMNTKDGPKTRKIFIGGLPASLTEDELKDHFSLYGKVLEHQIMLDHSTGRSRGFGFVTF 192
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGG 195
S + + I +GG+ V++ E + G
Sbjct: 193 ESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHG 226
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 16/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A+ +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + +
Sbjct: 46 ASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ A+ + + I G+ ++ + + P L+ + QG ++ NL
Sbjct: 106 GERALEDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIKNLDAA 150
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 151 IDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGML 204
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 200
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + +Y N+ +T + R
Sbjct: 201 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----VYIKNIDQEVTDEEFRK 251
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T + Q+A+D MN
Sbjct: 252 MFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMN 294
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 84/216 (38%), Gaps = 58/216 (26%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ +T ++F + G + SA + D+ +SRGFGFV + + A+ A+
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 175 DGSQIGGRTVKVNFPEVPRGGE----RAAMGPKLQNS--YQGFVDSPHKIYAGNLGWGLT 228
+ +I G+ + V + E + +L+ + YQG +Y NL +
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV-----NLYVKNLTDDVD 348
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYT----------------------------------- 253
+ LR+ F + SAKV+ + T
Sbjct: 349 DEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESE 408
Query: 254 -----------GRSRGFGFVTFETAEDLQSALDAMN 278
G+S+GFGFV F + ++ A+ MN
Sbjct: 409 EEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMN 444
Score = 37.0 bits (84), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 48/147 (32%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE ++ E ++ A+ + LYV NL + L E+F+ GT+ SA+++
Sbjct: 309 QKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVM 368
Query: 146 YDRVTD----------------------------------------------RSRGFGFV 159
D VT +S+GFGFV
Sbjct: 369 RDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFV 428
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKV 186
S +EA +A+ + + G+ + V
Sbjct: 429 CFSSPDEASKAVTEMNQRMVNGKPLYV 455
>gi|366992143|ref|XP_003675837.1| hypothetical protein NCAS_0C04830 [Naumovozyma castellii CBS 4309]
gi|342301702|emb|CCC69473.1| hypothetical protein NCAS_0C04830 [Naumovozyma castellii CBS 4309]
Length = 377
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 12/166 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++GNL + T L + F++ G V +AE++ R RS+G G V + +A+EAIR +
Sbjct: 80 IFIGNLSFDATEEDLRDFFSQVGEVVNAEVMSYR--GRSKGMGTVEFTNPADAEEAIRQY 137
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPK-LQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G GR + V + P G + + Q Y+ FV NL + +T Q L+
Sbjct: 138 NGVPFMGRDIFVKQDQPPPGSRQEFKSSEPTQQGYEAFV--------VNLPYSITWQNLK 189
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F+ ++ A V + Y G SRGFG V + ED+ A+D+ NG
Sbjct: 190 DIFRECGDVIRADVELD-YNGYSRGFGSVIYANEEDMFKAIDSFNG 234
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 27/189 (14%)
Query: 116 YVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
+V NLPYS+T +L ++F E G V A++ D SRGFG V + E+ +AI F+
Sbjct: 175 FVVNLPYSITWQNLKDIFRECGDVIRADVELD-YNGYSRGFGSVIYANEEDMFKAIDSFN 233
Query: 176 GSQIGGRTVKV-----NFP-----------------EVPRGGERA---AMGPKLQNSYQG 210
G+++ GR ++V N P +VP+ E A P G
Sbjct: 234 GAELEGRILEVREGKFNHPRDTFDDRRDFDDRRDFDDVPKEEEPVLPPAHNPSFTEGVSG 293
Query: 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
+ + +Y NL T L D F + A+++++ TG S G V + + +
Sbjct: 294 DGERNNTVYCNNLPLSTTVPDLYDLFGSVGEIAMAELVYDE-TGTSTGAAVVEYASQDAA 352
Query: 271 QSALDAMNG 279
++ +NG
Sbjct: 353 DVCINKLNG 361
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y NLP S T L ++F G +A AE+VYD T S G V S + A I
Sbjct: 301 VYCNNLPLSTTVPDLYDLFGSVGEIAMAELVYDE-TGTSTGAAVVEYASQDAADVCINKL 359
Query: 175 DGSQIGGRTVKVNFPEVP 192
+G GGR + + + P
Sbjct: 360 NGYNYGGRDLHITYASRP 377
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 208 YQGFVDSPHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
Y+ V+ H+ I+ GNL + T + LRD F +++A+V+ Y GRS+G G V F
Sbjct: 68 YESGVEKHHENGIFIGNLSFDATEEDLRDFFSQVGEVVNAEVM--SYRGRSKGMGTVEFT 125
Query: 266 TAEDLQSALDAMNGV 280
D + A+ NGV
Sbjct: 126 NPADAEEAIRQYNGV 140
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 16/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S +A LYVG L ++T + L E+F G VAS + D VT RS G+ +V + +
Sbjct: 40 AGSPPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAAD 99
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ A+ + S I R ++ + + P L+ + QG I+ NL
Sbjct: 100 GERALEQLNYSLIKNRPCRIMWSQ---------RDPALRKTGQG------NIFIKNLDEQ 144
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV + + G S+G+GFV +ETAE ++A+ +NG++
Sbjct: 145 IDNKALHDTFAAFGNVLSCKVATDEH-GNSKGYGFVHYETAEAAENAIKNVNGML 198
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + + +L + FA G V S ++ D + S+G+GFV + E A+ AI+
Sbjct: 136 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGN-SKGYGFVHYETAEAAENAIKNV 194
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + R ER + +++ + +Y N+ +T +
Sbjct: 195 NGMLLNDKKVYVGH-HISRK-ERQSKIDEMKAQFTN-------LYIKNIDPEVTDEEFEA 245
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ Q G +++ VI GRSRGFGFV +ET E+ Q A+D +N
Sbjct: 246 LFREQ-GNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAVDNLN 288
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 15/171 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ N+ +T +F E G V S+ I D RSRGFGFV + EEA++A+
Sbjct: 229 LYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDE-EGRSRGFGFVNYETHEEAQKAVDNL 287
Query: 175 DGSQIGGRTV-------KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ GR + K E R A KL + YQG +Y NL +
Sbjct: 288 NDKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKL-SKYQGL-----NLYVKNLDDDV 341
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ LR F+ + SAKV+ + G S+GFGFV + + E+ A+ MN
Sbjct: 342 DDEKLRAEFEPFGTITSAKVMRDD-KGVSKGFGFVCYSSPEEASKAVAEMN 391
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E EEE E+ + + + LYV NL + L F GT+ SA+++ D
Sbjct: 307 EREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDEKLRAEFEPFGTITSAKVMRD-- 364
Query: 150 TDR--SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D+ S+GFGFV S EEA +A+ + IG + + V
Sbjct: 365 -DKGVSKGFGFVCYSSPEEASKAVAEMNNKMIGSKPLYV 402
>gi|409049565|gb|EKM59042.1| hypothetical protein PHACADRAFT_169505 [Phanerochaete carnosa
HHB-10118-sp]
Length = 578
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 7/176 (3%)
Query: 107 AASDEAAR--LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
AA D A+ ++VG L +++ + L FAE G V SA + DR T +SRGFGFVT S
Sbjct: 301 AADDSASTKTIFVGKLSWNVDNDWLESEFAECGEVVSARVQMDRNTGKSRGFGFVTFASP 360
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI-YAGNL 223
E +A+ L +G +I GR + ++ V + ++ + + ++ +P + + GNL
Sbjct: 361 EAVDKALEL-NGKEIDGRPINID-KSVEK--DQNQVRERRAKAFGDATSAPSSVLFVGNL 416
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ T L + F + S ++ +R +GR +GFG+V FE E + A + + G
Sbjct: 417 SFDATEDQLWEVFSDYGSVKSVRMPTDRESGRPKGFGYVEFEDVESAKKAHEGLAG 472
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 72 FDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAE 131
DG + D E + Q E +A + A S ++ L+VGNL + T L E
Sbjct: 374 IDGRPINIDKSVEKDQNQVRERRAKAFGD------ATSAPSSVLFVGNLSFDATEDQLWE 427
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191
VF++ G+V S + DR + R +GFG+V VE AK+A G +I GR V+++F +
Sbjct: 428 VFSDYGSVKSVRMPTDRESGRPKGFGYVEFEDVESAKKAHEGLAGQEIAGRAVRLDFSQ- 486
Query: 192 PR 193
PR
Sbjct: 487 PR 488
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 27/121 (22%)
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
V G + EA + + VKV+ + +A S I
Sbjct: 278 VANGKRKAEGEAAKPV-------KKVKVD-----EAADDSA--------------STKTI 311
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ G L W + + L F ++SA+V +R TG+SRGFGFVTF + E + AL+ +N
Sbjct: 312 FVGKLSWNVDNDWLESEFAECGEVVSARVQMDRNTGKSRGFGFVTFASPEAVDKALE-LN 370
Query: 279 G 279
G
Sbjct: 371 G 371
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG L ++T + L E+F G VAS + D VT RS G+ +V + + + A+
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ S I R ++ + + P L+ + QG I+ NL + ++ L D
Sbjct: 106 NYSLIKNRACRIMW---------SQRDPALRKTGQG------NIFIKNLDEQIDNKALHD 150
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + + GRS+G+GFV +ET E ++A+ A+NG++
Sbjct: 151 TFAAFGNVLSCKVATDEH-GRSKGYGFVHYETGEAAETAIKAVNGML 196
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + + +L + FA G V S ++ D RS+G+GFV + E A+ AI+
Sbjct: 134 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDE-HGRSKGYGFVHYETGEAAETAIKAV 192
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + R ER + KL F + +Y NL +T +
Sbjct: 193 NGMLLNDKKVYVGY-HISRK-ERQS---KLDEMKAQFTN----LYIKNLDTSVTQDEFEE 243
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
FQ + SA V + G S+GFGFV +E E+ QSA+DA++
Sbjct: 244 MFQKYGNVTSAIVQVDE-EGNSKGFGFVNYEHHEEAQSAVDALH 286
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 17/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL S+T E+F + G V SA + D + S+GFGFV EEA+ A+
Sbjct: 227 LYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGN-SKGFGFVNYEHHEEAQSAVDAL 285
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ I G+ + V+ E+ R E+A M KL + YQG +Y NL
Sbjct: 286 HDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKME-KL-SKYQGV-----NLYIKNLEDD 338
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + LR F+ + S KV+ + + S+GFGFV F + ++ A+ MN
Sbjct: 339 VDDEKLRAEFEPFGTITSCKVMRDDKS-TSKGFGFVCFSSPDEATKAVAEMN 389
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 17/185 (9%)
Query: 88 EQEEEEEEEAVEEEEEPKVA--ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE E+ K+ + + LY+ NL + L F GT+ S +++
Sbjct: 301 QKKAEREEELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVM 360
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP---EVPRGGERAAMGP 202
D + S+GFGFV S +EA +A+ + IG + + V+ EV R + +
Sbjct: 361 RDDKST-SKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQ 419
Query: 203 KLQNSYQ---------GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT 253
+ Q Q G+++ P +Y QG GQPG+L + +
Sbjct: 420 RNQIRMQQAAAAGIPGGYINGP--MYYPPGPGSFPPQGRNMMGYGQPGMLPPRPRYPAGN 477
Query: 254 GRSRG 258
G+ G
Sbjct: 478 GQVPG 482
>gi|6019464|gb|AAC64372.2| polyadenylate-binding protein 1 [Leishmania major]
Length = 560
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+P++ E A +YVG+L ++ L E+F GT+ + + D +T RS G+G+V
Sbjct: 14 HQPQMDKPIEIASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNF 73
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ + A++AI + ++G + V++ + + P L+ S G ++
Sbjct: 74 DNHDSAEKAIESMNFKRVGDKCVRLMWQQ---------RDPALRYSGNG------NVFVK 118
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL + S+ L D F +LS KV+ + G+SRG+GFV F+ + A+ MNG
Sbjct: 119 NLEKDVDSKSLHDIFTKFGSILSCKVM-QDEEGKSRGYGFVHFKDETSAKDAIVKMNG 175
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 4/165 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ + ++ + + FA+ G + SA D+ R F F ++A +A+
Sbjct: 209 VYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDK---SGRVFAFCNFEKHDDAVKAVEAM 265
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
I G T V R R+ L+ Y + +Y N T L +
Sbjct: 266 HDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLE 325
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F+ + S +V+ +G SRGFGFV+F A++ +AL MNG
Sbjct: 326 LFKEYGEVKSCRVMVSE-SGVSRGFGFVSFSNADEANAALREMNG 369
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N T + L E+F E G V S ++ + SRGFGFV+ + +EA A+R
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSE-SGVSRGFGFVSFSNADEANAALREM 367
Query: 175 DGSQIGGRTVKVNF 188
+G + G+ + VN
Sbjct: 368 NGRMLNGKPLIVNI 381
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 22/169 (13%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + S SL ++F + G++ S +++ D +SRG+GFV AK+AI
Sbjct: 115 VFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDE-EGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 175 DGSQIGGRTVK-----VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
+G+ K NF + R AA+ N +Y + +
Sbjct: 174 NGAADHASEDKKALYVANF--IRRNARLAALVANFTN-----------VYIKQVLPTVNK 220
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ F G+ SA ++ +GR F F FE +D A++AM+
Sbjct: 221 DVIEKFFAKFGGITSAAACKDK-SGRV--FAFCNFEKHDDAVKAVEAMH 266
>gi|168064363|ref|XP_001784132.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664332|gb|EDQ51056.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 453
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 89/174 (51%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L+VG+L Y M + L F G V S +I+ ++ T S G+GFV S A++
Sbjct: 40 EEVKTLWVGDLQYWMDENYLHTAFVHTGEVQSVKIIRNKQTGYSEGYGFVEFVSHVAAEK 99
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ + ++N+ G R GP+ H I+ G+L +
Sbjct: 100 ILQAYNGTQMPNTEQPFRLNWASFGIGERRPEAGPE------------HSIFVGDLAPDV 147
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F+ + P + AKV+ + TGRS+G+GFV F + A+ MNG+
Sbjct: 148 TDYMLQETFRTRYPSVKGAKVVTDANTGRSKGYGFVRFGDEMERNRAMSEMNGI 201
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 26/186 (13%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D T RS+G+GFV G E A+
Sbjct: 138 IFVGDLAPDVTDYMLQETFRTRYPSVKGAKVVTDANTGRSKGYGFVRFGDEMERNRAMSE 197
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKL-------------QNSYQGFV--DSPHK- 217
+G R ++++ + + PK+ Q S Q F + P+
Sbjct: 198 MNGIYCSSRPMRISAATPKKSLGPNQLNPKVSPVAVATYAAYGAQPSPQAFPTDNDPNNT 257
Query: 218 -IYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
I+ G L + + LR+ F GQ G L+ K+ +G GFV F + AL
Sbjct: 258 TIFVGGLDPAVGDEDLRNVF-GQFGELVYVKIP------AGKGCGFVQFTHRACAEEALQ 310
Query: 276 AMNGVV 281
++ V
Sbjct: 311 RLHQTV 316
>gi|226222462|gb|ACO38649.1| nucleolin-like protein [Rattus norvegicus]
Length = 569
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 341 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAK 396
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 397 EALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQP------------SKTLFVKGLSEDTT 443
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F+G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 444 EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAM 489
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 18/180 (10%)
Query: 102 EEPKVAASDE--AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
E+PK S + AAR L NL +++T L EVF +A EI RS+G +
Sbjct: 239 EKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA-----VEIRLVSQDGRSKGIAY 293
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
+ S +A++ + G++I GR+V + + G+R K +++ G +
Sbjct: 294 IEFKSEADAEKNLEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSG---ESKTL 347
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
NL + T + L++ F+ + + + G+S+G+ F+ F + ED + AL++ N
Sbjct: 348 VLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAKEALNSCN 403
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 425 ARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEED 481
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 482 AKTAKEAMEDGEIDGNKVTLDWAK-PKG 508
Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 44/175 (25%)
Query: 115 LYVGNLPYSMT--SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
L++GNL S+ +++++FA+ A D T +R FG+V S E+ ++A+
Sbjct: 171 LFIGNLNKSVAELKVAISDLFAKNDLAA-----VDVRTGTNRKFGYVDFESAEDLEKALE 225
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
L G ++ G +K+ E P+G ++S + V + + A NL + +T L
Sbjct: 226 L-TGLKVFGNEIKL---EKPKG----------RDSKK--VRAARTLLAKNLSFNITEDEL 269
Query: 233 RDAFQGQPGLLSAKVIFERYT--------GRSRGFGFVTFETAEDLQSALDAMNG 279
++ +FE GRS+G ++ F++ D + L+ G
Sbjct: 270 KE-------------VFEDAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQG 311
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A+D MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGML 162
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G + G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 MFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDDMNG 253
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|115460220|ref|NP_001053710.1| Os04g0591000 [Oryza sativa Japonica Group]
gi|38346724|emb|CAE04874.2| OSJNBa0086O06.22 [Oryza sativa Japonica Group]
gi|113565281|dbj|BAF15624.1| Os04g0591000 [Oryza sativa Japonica Group]
gi|215706340|dbj|BAG93196.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 291
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV N+P+S + + ++FA+ G V E++ + +GF FVTM + EEA A+
Sbjct: 81 KLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIK-GKDGKKKGFAFVTMATAEEAAAAVEK 139
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ + GRT++V F + R G + HK+Y NL W + ++
Sbjct: 140 LNSLDVMGRTIRVEFSKSFRK--------PAPPPPPGTILERHKLYVSNLPWKARAPNMK 191
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F + LSAKV+F+ +G+S G+GFV+F T E+ ++AL ++G
Sbjct: 192 EFF-SKFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDG 236
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +LYV NLP+ + ++ E F++ + SA++V+D + +S G+GFV+ G+ EEA+ A
Sbjct: 172 ERHKLYVSNLPWKARAPNMKEFFSKFNPL-SAKVVFDSPSGKSAGYGFVSFGTKEEAEAA 230
Query: 171 IRLFDGSQIGGRTVKVNF 188
+ DG ++ GR V++ +
Sbjct: 231 LTELDGKELMGRPVRLRW 248
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 18/190 (9%)
Query: 94 EEEAVEEEEEPKVAASDEA--ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
E EA E E K + D+ A LYVG L S+T + L E+F G V S + D +T
Sbjct: 25 EGEAKTESSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITR 84
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF 211
RS G+ +V + + A+ + S I R ++ + + P L+ + G
Sbjct: 85 RSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMW---------SQRDPALRKTGAG- 134
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
IY NL + ++ L D F +LS K+ + + G SRGFGFV +E+AE +
Sbjct: 135 -----NIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEF-GNSRGFGFVHYESAESAE 188
Query: 272 SALDAMNGVV 281
SA+ +NG++
Sbjct: 189 SAIQHVNGML 198
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +Y+ NL ++ + +L + F+ G + S +I D + SRGFGFV S E A+ AI
Sbjct: 133 AGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGN-SRGFGFVHYESAESAESAI 191
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS-- 229
+ +G + + V V P VP+ +R + +NS+ ++ NLG +T
Sbjct: 192 QHVNGMLLNDKKVFVG-PHVPK-SDRMQSFEEQKNSFT-------NVFIKNLGTEITEAE 242
Query: 230 -QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L + F G S+ + G+ GFGFV ++ + A+D +
Sbjct: 243 FEELVNKF----GETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGL 287
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LY+ NL ++ L FA GT+ SA+++ D +S+GFGFV S EEA +A
Sbjct: 328 QGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAG-KSKGFGFVCYSSPEEATKA 386
Query: 171 IRLFDGSQIGGRTVKV 186
+ + + G+ + V
Sbjct: 387 VTEMNHRLVAGKPLYV 402
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI--- 171
+++ NL +T + E+ + G +S + + + GFGFV + A +AI
Sbjct: 229 VFIKNLGTEITEAEFEELVNKFGETSSVHLSTND-EGKPTGFGFVDYKEHDVAVKAIDGL 287
Query: 172 --RLFDGSQIGGRTVKVNFPEVP--RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
F G+++ K + R A+ KL N YQG +Y NL +
Sbjct: 288 SETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKL-NKYQGV-----NLYIKNLDDTI 341
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
LR F + SAKV+ + G+S+GFGFV + + E+ A+ MN
Sbjct: 342 DDDKLRAEFAPHGTITSAKVMVDE-AGKSKGFGFVCYSSPEEATKAVTEMN 391
>gi|121596409|ref|YP_988305.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|120608489|gb|ABM44229.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
Length = 149
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F++ G V SA+++ +R T RS+GFGFV MGS EA+EAI
Sbjct: 4 KLYVGNLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAING 63
Query: 174 FDGSQIGGRTVKVN 187
+G +GGR++ VN
Sbjct: 64 MNGQSLGGRSIVVN 77
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + + Q L AF + SAKV+ ER TGRS+GFGFV + + Q A++
Sbjct: 3 NKLYVGNLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAIN 62
Query: 276 AMNG 279
MNG
Sbjct: 63 GMNG 66
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M + L E+F+ G S +++ D T RS+GFGFV EE
Sbjct: 185 ARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDN-TGRSKGFGFVNFEKHEE 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
A++A+ +G +I GR V V E+ R E+ M + + YQG +
Sbjct: 244 AQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQ--MKQERVSRYQGV-----NL 296
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL G+ + LR F + SAKV+ E G S+GFGFV F + E+ A+ MN
Sbjct: 297 YVKNLDDGIDDERLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 279 GVV 281
G +
Sbjct: 355 GRI 357
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D + RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR V++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVG---------------NVFIKNLDDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + SRG GFV FET E A++ MNG++
Sbjct: 116 YDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIETMNGML 162
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + SRG GFV + E A AI
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIETM 158
Query: 175 DGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + R V V R E A + N +Y N G + L
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTN-----------VYIKNFGDDMDDNRL 207
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
R+ F LS KV+ + TGRS+GFGFV FE E+ Q A+ MNG
Sbjct: 208 REIFSRFGKTLSVKVMMDN-TGRSKGFGFVNFEKHEEAQKAVADMNG 253
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q E + E + + E +++E + + LYV NL + L + F+ GT+
Sbjct: 266 AQKRLERQSELKRKFEQMKQER----VSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTIT 321
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
SA+++ + S+GFGFV S EEA +A+ +G + + + V + R ER A+
Sbjct: 322 SAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ--RKEERKAI 377
Query: 201 GPKLQNSY 208
L N Y
Sbjct: 378 ---LTNQY 382
>gi|310793176|gb|EFQ28637.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 769
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 13/189 (6%)
Query: 103 EPKVA-ASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
EPK A EA R L+V +LP + TS SL + F+E V A +V D+ T SRG+GFVT
Sbjct: 37 EPKAKKARTEANRSLFVRSLPATATSESLTDFFSEHFPVKHATVVLDKATKASRGYGFVT 96
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV-PRGGERAAMGP----KLQNSYQGFVDS- 214
+ E+A EA + + GR ++V+ E R G+ +A+G + Q Q ++
Sbjct: 97 LTDAEDAMEAKKKLNNMMWEGRRIRVDVAEARHRDGKESAVGAAAAGQKQKRAQELEEAR 156
Query: 215 -PHKIYAGNLGWGL-TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
P K+ NL W + TS+ L F+ G++ + G+ +GFGFVT ++ +
Sbjct: 157 KPPKLIIRNLPWSIKTSEQLGALFRAY-GVVKF-ADLPQNKGKLKGFGFVTLRGRKNAEK 214
Query: 273 ALDAMNGVV 281
AL+ MNG V
Sbjct: 215 ALE-MNGKV 222
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
++D + L++ NLP+++T L E F + G V A +V DR T+R G GFV + E+A
Sbjct: 346 STDNKSTLFIRNLPFTVTDDQLKEHFVKFGPVRYARVVMDRATERPAGTGFVCFVNEEDA 405
Query: 168 KEAIR 172
K I+
Sbjct: 406 KACIK 410
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++T S L + F E V S + D T+ S G+G+V + E+A++A++
Sbjct: 43 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQKL 102
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ S + G+ +++ + R+ +G ++ NL + ++ L +
Sbjct: 103 NYSTLNGKMIRITYSSRDSSARRSGVG---------------NLFVKNLDKSVDNKTLHE 147
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F G ++S KV + + G+SRG+GFV F+T + ++A++ +NG V
Sbjct: 148 TFSGCGTIVSCKVAAD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKV 193
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 13/167 (7%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
L+V NL S+ + +L E F+ GT+ S ++ D + +SRG+GFV + + AK AI
Sbjct: 129 GNLFVKNLDKSVDNKTLHETFSGCGTIVSCKVAADHM-GQSRGYGFVQFDTEDSAKNAIE 187
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + + + V R ER + K++ + +Y NL T L
Sbjct: 188 KLNGKVLNDKQIFVG--PFLRKEERESAADKMKFT---------NVYVKNLSEVTTDDEL 236
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F GQ G +S+ V+ G+SR FGFV FE ED A++A+NG
Sbjct: 237 KTTF-GQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG 282
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 13/188 (6%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ +EE A + +YV NL T L F + G+++SA ++ D +SR FG
Sbjct: 205 LRKEERESAADKMKFTNVYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFG 263
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPH 216
FV + E+A A+ +G + + V + + ER +L Y QG D+ +
Sbjct: 264 FVNFENPEDAARAVEALNGKKFDDKEWYVG--KAQKKSEREL---ELSRRYEQGSSDAGN 318
Query: 217 K-----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
K +Y NL +T + LR+ F + S KV+ + +G S+G GFV F A +
Sbjct: 319 KFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEAS 377
Query: 272 SALDAMNG 279
L+ MNG
Sbjct: 378 RVLNEMNG 385
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
+ +++ E E E E+ A + + LYV NL ++T L E+FAE GT+ S +
Sbjct: 294 KAQKKSERELELSRRYEQGSSDAGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCK 353
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
++ D + S+G GFV + EA + +G +GG+ + V
Sbjct: 354 VMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYV 395
>gi|164657762|ref|XP_001730007.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
gi|159103901|gb|EDP42793.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
Length = 638
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VG L +++ + L F + GTV A + DR + RSRGFG+V + EA A +
Sbjct: 396 LWVGQLSWNVDNDWLKSEFEQYGTVLDARVQCDRDSGRSRGFGYVDFATSAEALRASKEA 455
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGP--KLQNSYQGFVDS----PHKIYAGNLGWGLT 228
G ++ GR ++V+ + A GP + ++ + F D + ++ G L W LT
Sbjct: 456 HGKELDGRALRVDL--------QPARGPQDRAESRAKHFKDERSAPSNTLFIGGLAWALT 507
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ +AF + ++ E +GR +GFG+V F + ++ AL+ MNG
Sbjct: 508 EDDIWNAFAEFGEVTGVRLPKEIDSGRPKGFGYVEFVSQDNAAKALETMNG 558
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++G L +++T + FAE G V + + + R +GFG+V S + A +A+
Sbjct: 497 LFIGGLAWALTEDDIWNAFAEFGEVTGVRLPKEIDSGRPKGFGYVEFVSQDNAAKALETM 556
Query: 175 DGSQIGGRTVKVNF 188
+G +GGR ++++F
Sbjct: 557 NGQALGGRPIRIDF 570
>gi|222112647|ref|YP_002554911.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|221732091|gb|ACM34911.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 155
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F++ G V SA+++ +R T RS+GFGFV MGS EA+EAI
Sbjct: 4 KLYVGNLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAING 63
Query: 174 FDGSQIGGRTVKVN 187
+G +GGR++ VN
Sbjct: 64 MNGQSLGGRSIVVN 77
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + + Q L AF + SAKV+ ER TGRS+GFGFV + + Q A++
Sbjct: 3 NKLYVGNLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAIN 62
Query: 276 AMNG 279
MNG
Sbjct: 63 GMNG 66
>gi|405961983|gb|EKC27707.1| Splicing factor 3B subunit 4 [Crassostrea gigas]
Length = 405
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +YVG+L +T + L E+F +AG V + + DRVT +G+GFV E
Sbjct: 6 IAERNQDATVYVGSLDDKVTEAILWELFLQAGPVVNVHMPKDRVTQSHQGYGFVEFMGEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ ++VN +++Q +D I+ GNL
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN----------------KASAHQKNLDVGANIFIGNLDP 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG S+G+ F+ F + E +AL+AMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFEAADAALEAMNG 164
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 19/186 (10%)
Query: 97 AVEEEEEPKVAASDEA---ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
A +EE P V + +A A LYVG+L +T L E+F GT+ + + D +T RS
Sbjct: 10 ATQEEITPTVPVTTKALQVASLYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRS 69
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD 213
G+G+V S + A +A+ + ++G + +++ + + P L+ S G
Sbjct: 70 LGYGYVNFNSHDSAAKAMEALNFKRVGDKCMRIMWQQ---------RDPTLRYSGNG--- 117
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
I+ NL + S+ L F+ +LS KV+ E G+SRG+GFV F+ + A
Sbjct: 118 ---NIFVKNLKNEVDSRELSVIFKKFGDILSCKVM-EDEEGKSRGYGFVHFKNDNAAKEA 173
Query: 274 LDAMNG 279
++ MNG
Sbjct: 174 IENMNG 179
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N T +L E+F E G + S ++ D SRGFGFV+ + ++A A+R
Sbjct: 314 LYVRNFDPEFTEENLHELFKEYGVIRSCRVMTD-ANGNSRGFGFVSFENADQANAALREM 372
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAM 200
+G + G+ + VN + R +R M
Sbjct: 373 NGRMLNGKPLIVNIAQ--RRDQRFMM 396
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 14/170 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI--- 171
+Y+ + ++ + + F++ G + S+ D+ R F F E+A +AI
Sbjct: 214 VYIKQVLPTVDKEVIEKFFSKFGGITSSATCKDK---NGRVFAFCNFEKHEDAVKAIEAS 270
Query: 172 --RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
+ DG G + V R R+ L+ Y + +Y N T
Sbjct: 271 HEQFVDGVVPPGEKLYVQ-----RAQPRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTE 325
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L + F+ + G++ + + G SRGFGFV+FE A+ +AL MNG
Sbjct: 326 ENLHELFK-EYGVIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNG 374
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 28/178 (15%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + S L+ +F + G + S +++ D +SRG+GFV + AKEAI
Sbjct: 119 IFVKNLKNEVDSRELSVIFKKFGDILSCKVMEDE-EGKSRGYGFVHFKNDNAAKEAIENM 177
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ------GFVDSPHKIYAGNLGWGLT 228
+G E E MG + N + V + +Y + +
Sbjct: 178 NG-------------EKDHADEEKKMGLYVANFIRRNARLATLVANFTNVYIKQVLPTVD 224
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA-----MNGVV 281
+ + F G+ S+ ++ R F F FE ED A++A ++GVV
Sbjct: 225 KEVIEKFFSKFGGITSSATCKDK---NGRVFAFCNFEKHEDAVKAIEASHEQFVDGVV 279
>gi|387050|gb|AAA36966.1| nucleolin, C23, partial [Cricetulus griseus]
Length = 679
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 447 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDAK 502
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 503 EALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 549
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F+G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 550 EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 595
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
Query: 112 AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
AAR L NL +++T L EVF +A EI +S+G ++ S +A++
Sbjct: 357 AARTLLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEADAEKN 411
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR+V + + G+R K +++ G + NL + T +
Sbjct: 412 LEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSG---ESKTLVLSNLSYSATEE 465
Query: 231 GLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L++ F+ K F + G+S+G+ F+ F + ED + AL++ N
Sbjct: 466 TLQEVFE--------KATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCN 509
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 531 ARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEED 587
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 588 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 614
>gi|357163840|ref|XP_003579863.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 428
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A +E ++VG+L Y M + L F +G V + +++ +R T ++ G+GFV S A
Sbjct: 99 ACEENKTIWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQTEGYGFVEFYSHASA 158
Query: 168 KEAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A++ F G + R K+N+ G +R+ V S H I+ G+L
Sbjct: 159 DKALQNFTGHAMPNTDRPFKLNWASYSMGEKRSE------------VVSDHSIFVGDLAA 206
Query: 226 GLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T + L + F + + AKVI + TGRSRG+GFV F D A+ MNGV
Sbjct: 207 DVTDEMLMELFASKYRSVKGAKVIIDANTGRSRGYGFVRFGEDSDKSRAMTEMNGV 262
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E+FA + +V A+++ D T RSRG+GFV G + A+
Sbjct: 199 IFVGDLAADVTDEMLMELFASKYRSVKGAKVIIDANTGRSRGYGFVRFGEDSDKSRAMTE 258
Query: 174 FDGSQIGGRTVKVNFPEVPR--GGERAAMGPKLQNSYQGFVDSPHK-IYAGNLGWGLTSQ 230
+G R +++ P PR G+ + P + DS ++ +Y G L ++
Sbjct: 259 MNGVYCSTRPIRIG-PATPRRTAGDSGSSTPGHSDG-----DSTNRTVYVGGLDPNVSED 312
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
LR +F + S K+ + + GFV + D + AL +NG V
Sbjct: 313 ELRKSFAKYGDVASVKIP------QGKQCGFVQYVNRTDAEEALQGLNGSV 357
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 104 PKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
P + D R +YVG L +++ L + FA+ G VAS +I + + GFV
Sbjct: 288 PGHSDGDSTNRTVYVGGLDPNVSEDELRKSFAKYGDVASVKI------PQGKQCGFVQYV 341
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE-RAAMGPKLQNSYQG 210
+ +A+EA++ +GS IG + V++++ P + R G + N Y G
Sbjct: 342 NRTDAEEALQGLNGSVIGKQAVRLSWGRSPSHKQPRGDSGNRRNNMYYG 390
>gi|46121573|ref|XP_385341.1| hypothetical protein FG05165.1 [Gibberella zeae PH-1]
Length = 568
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 10/192 (5%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
+++ E EE P++ + R ++V L + + L E F G V A+IV DR+
Sbjct: 155 DDDRRETKREEGNPQLTEDERDRRTVFVQQLAARLRTRELKEFFERVGPVNEAQIVKDRI 214
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
+ RS+G G+V + E +A++L G ++ G V V E + R A P+ +
Sbjct: 215 SQRSKGVGYVEFKNEESVTQALQLT-GQKLLGIPVIVQVTEAEKN--RQARNPEASGPHP 271
Query: 210 GFVDSP-HKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETA 267
+ P H++Y GN+ + +T Q L+ F +P G L + + GRSRG+GFV F A
Sbjct: 272 NSI--PFHRLYVGNIHFNVTEQDLQAVF--EPFGELEFVQLQKDENGRSRGYGFVQFRDA 327
Query: 268 EDLQSALDAMNG 279
+ AL+ MNG
Sbjct: 328 GQAREALEKMNG 339
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGN+ +++T L VF G + ++ D RSRG+GFV +A+EA+
Sbjct: 278 RLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDE-NGRSRGYGFVQFRDAGQAREALEK 336
Query: 174 FDGSQIGGRTVKV 186
+G + GR ++V
Sbjct: 337 MNGFDLAGRPIRV 349
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V + + ++A+
Sbjct: 113 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNATADGEKAL 172
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 173 EDLNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDVAIDNKA 217
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + G S+G+GFV +ET E +A+ +NG++
Sbjct: 218 LHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAANAIKHVNGML 266
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A AI+
Sbjct: 204 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAANAIKHV 262
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + +P+ ++ K + F + +Y N+ +T + R+
Sbjct: 263 NGMLLNEKKVYVGY-HIPKKDRQS----KFEEMKANFTN----VYVKNIPAEVTDEEFRE 313
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + G +++ + G+SRGFGFV F T E A++ +NG
Sbjct: 314 LF-AKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAASKAVEELNG 357
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 81/209 (38%), Gaps = 53/209 (25%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+P +T E+FA+ G V S+ + +SRGFGFV + E A +A+
Sbjct: 297 VYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSD-EGKSRGFGFVNFTTHEAASKAVEEL 355
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+G G+ + V E+ R E A + N YQG +Y NLG
Sbjct: 356 NGKDFRGQELYVGRAQKKHEREEELRRSYEAARQ--EKANKYQGV-----NLYIKNLGDD 408
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFE------------------------------------ 250
+ LR F + SAKV+ +
Sbjct: 409 VDDDKLRQMFSEYGPITSAKVMRDSVVESAAEDEKDKENKKEDEEEKEGETAEKKAETKE 468
Query: 251 -RYTGRSRGFGFVTFETAEDLQSALDAMN 278
R G+S+GFGFV F +D A+ MN
Sbjct: 469 KRKLGKSKGFGFVCFSNPDDATKAVTEMN 497
>gi|125600441|gb|EAZ40017.1| hypothetical protein OsJ_24455 [Oryza sativa Japonica Group]
Length = 323
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
DE L++G+L Y M S L+ FA G V S +++ ++ + S G+GF+ S A+
Sbjct: 125 DEIRSLWIGDLQYWMDESYLSNAFAPMGQQVTSVKVIRNKQSGHSEGYGFIEFQSHAAAE 184
Query: 169 EAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLGW 225
A+ F+G + + K+N+ G RAA D P H I+ G+L
Sbjct: 185 YALANFNGRMMLNVDQLFKLNWASSGAGERRAA------------DDGPEHTIFVGDLAS 232
Query: 226 GLTSQGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+T L +AF+ P + AKV+F++ TGRS+G+GFV F + A+ MNG
Sbjct: 233 DVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFGDENEQTRAMTEMNGAT 289
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T S L E F + +V A++V+D+VT RS+G+GFV G E A+
Sbjct: 225 IFVGDLASDVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFGDENEQTRAMTE 284
Query: 174 FDGSQIGGRTVKV 186
+G+ + R +++
Sbjct: 285 MNGATLSTRQMRL 297
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V + + ++A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 120 EELNYTLIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDVAIDNKA 164
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + G S+G+GFV +ET E A+ +NG++
Sbjct: 165 LHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGML 213
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A +AI+
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHV 209
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K F + IY N+ +T R
Sbjct: 210 NGMLLNEKKVYVGH-HIPKKDRQS----KFDEMKANFTN----IYVKNINPEVTDDEFRT 260
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S+ + ++ TG+SRGFGFV F + ED A+ +N
Sbjct: 261 LFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELN 304
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T +F + G V S+ + D+ T +SRGFGFV S E+A +A++
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ + G+ + V R ++ +L+ SY+ Y G NL +
Sbjct: 304 NEKEFHGQNLYVG-----RAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVD 358
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYT 253
+ LR F + SAKV+ + T
Sbjct: 359 DEKLRQLFSEFGPITSAKVMRDSIT 383
>gi|366988347|ref|XP_003673940.1| hypothetical protein NCAS_0A10010 [Naumovozyma castellii CBS 4309]
gi|342299803|emb|CCC67559.1| hypothetical protein NCAS_0A10010 [Naumovozyma castellii CBS 4309]
Length = 506
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 25/167 (14%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM--- 161
K S E +L++G L + T L + F++ G V +I+ D T RSRGFGF+T
Sbjct: 185 KADLSKECCKLFIGGLNWETTEDKLKDYFSKYGNVVDLKIMKDNATGRSRGFGFLTFELS 244
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
SV+E + + DG I + +PR + D KI+ G
Sbjct: 245 SSVDEVVKTQHILDGKVIDPKRA------IPREEQ----------------DKTGKIFVG 282
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
+G + + + F ++ A+++ ++ TGRSRGFGF+T++++E
Sbjct: 283 GIGPDVRPKEFEEFFAQWGTIIDAQLMLDKDTGRSRGFGFITYDSSE 329
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
K++ G L W T L+D F ++ K++ + TGRSRGFGF+TFE L S++D
Sbjct: 194 KLFIGGLNWETTEDKLKDYFSKYGNVVDLKIMKDNATGRSRGFGFLTFE----LSSSVD 248
>gi|170061963|ref|XP_001866463.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167880034|gb|EDS43417.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 341
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 18/171 (10%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT-DRSRGFGFVTMGSVEEAK 168
D L V LP +MT + +F+ G V S +++ D+VT +S G+GFV E+A+
Sbjct: 24 DSKTNLIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTAGQSLGYGFVNYHRPEDAE 83
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+AI F+G ++ +T+KV+F R A G L Y L +T
Sbjct: 84 KAINTFNGLRLQNKTIKVSFA---RPSSDAIKGANL--------------YVSGLSKSMT 126
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q L FQ +++++++ + TG S+G GF+ F+ + + A+ +NG
Sbjct: 127 QQDLEALFQPYGQIITSRILCDNITGLSKGVGFIRFDQRSEAERAIQQLNG 177
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 39/208 (18%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ A LYV L SMT L +F G + ++ I+ D +T S+G GF+ EA+ A
Sbjct: 112 KGANLYVSGLSKSMTQQDLEALFQPYGQIITSRILCDNITGLSKGVGFIRFDQRSEAERA 171
Query: 171 IRLFDGSQIGGRT--VKVNFPEVPRGGERAAM---------GPKLQNSYQGFVD------ 213
I+ +G+ G + + V F P A+ P L+ G +
Sbjct: 172 IQQLNGTTPKGASEPITVKFANNPSNNINKAIPPLAAYLTPTPNLRRFPPGPIHPLGGRF 231
Query: 214 SPHKIYAGNLGWGLTSQG----------------------LRDAFQGQPGLLSAKVIFER 251
S + G+LG + S L F + S KVI +
Sbjct: 232 SRYSPLTGDLGTSVLSANAINGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIKDL 291
Query: 252 YTGRSRGFGFVTFETAEDLQSALDAMNG 279
T + +GFGFVT ++ A+ ++NG
Sbjct: 292 QTNKCKGFGFVTMTNYDEAVVAVQSLNG 319
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + L ++F G V S +++ D T++ +GFGFVTM + +EA A++
Sbjct: 258 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIKDLQTNKCKGFGFVTMTNYDEAVVAVQSL 317
Query: 175 DGSQIGGRTVKVNF 188
+G +G R ++V+F
Sbjct: 318 NGYTLGNRVLQVSF 331
>gi|21618243|gb|AAM67293.1| nuclear acid binding protein, putative [Arabidopsis thaliana]
Length = 392
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
+ D+ L+VG+L + M + L F+ G V+S +++ +++T +S G+GFV S
Sbjct: 59 GSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAA 118
Query: 167 AKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPHKIYAGNL 223
A+E ++ + GS + + ++N+ G +RA GP L ++ G+L
Sbjct: 119 AEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDL------------SVFVGDL 166
Query: 224 GWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+T L + F + P + SAKV+ + TGRS+G+GFV F + AL MNG
Sbjct: 167 SPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNG 223
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F++ +V SA++V D T RS+G+GFV G E A+
Sbjct: 161 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 220
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG-- 231
+G+ R ++V R A+ + Q+S Q + + G++G+G S G
Sbjct: 221 MNGAYCSNRQMRVGIATPKR-----AIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGES 275
Query: 232 ------------------LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
LR F ++S K+ +G GFV F + + A
Sbjct: 276 TNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFADRKSAEDA 329
Query: 274 LDAMNGVV 281
++++NG V
Sbjct: 330 IESLNGTV 337
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A ++VG + + L + F++ G V S +I +G GFV + A++AI
Sbjct: 278 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFADRKSAEDAIE 331
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G+ IG TV++++ P R G + Y
Sbjct: 332 SLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWNGGY 367
>gi|255554923|ref|XP_002518499.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223542344|gb|EEF43886.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 430
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 18/175 (10%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
+DE L++G+L Y M + + FA G V S +++ ++ T + G+GF+ GS A+
Sbjct: 85 ADEVRTLWIGDLQYWMDENYINSCFAHTGEVTSVKVIRNKQTGQVEGYGFIEFGSHGTAE 144
Query: 169 EAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH-KIYAGNLGW 225
++ ++G+ + G + ++N+ G +R D+P I+ G+L
Sbjct: 145 RILQTYNGTPMPNGEQNFRLNWASFSGGDKRD--------------DTPDFTIFVGDLAA 190
Query: 226 GLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+T L+D F+ P + AKV+ +R TGR++G+GFV F + A+ MNG
Sbjct: 191 DVTDYILQDTFRVHYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTDMNG 245
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 20/176 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L + F +V A++V DR+T R++G+GFV G E A+
Sbjct: 183 IFVGDLAADVTDYILQDTFRVHYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTD 242
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG---PK--LQNSY-QG-FVDSPHK--IYAGNLG 224
+G+ R +++ + A G PK QNS QG + P+ I+ GNL
Sbjct: 243 MNGAFCSTRPMRIGLAT----NKNAVTGQQYPKASYQNSQTQGENENDPNNTTIFVGNLD 298
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T LR+ F LL K+ + GFV F + AL +NG
Sbjct: 299 SNVTDDNLRELFGRYGQLLHVKIP------AGKRCGFVQFADRSCAEEALRLLNGT 348
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
E E +P ++VGNL ++T +L E+F G + +I + GF
Sbjct: 282 ENENDPNNTT------IFVGNLDSNVTDDNLRELFGRYGQLLHVKIPAGKRC------GF 329
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192
V A+EA+RL +G+ + G+++++++ P
Sbjct: 330 VQFADRSCAEEALRLLNGTSLSGQSIRLSWGRSP 363
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A + A LYVG+L +T ++L E F++ G+V S + D V+ +S G+ +V
Sbjct: 1 MAEHQQNASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHA 60
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+AK A+ + +I + ++ + + R+ G I+ NL
Sbjct: 61 DAKHALEELNFEKIHDKPCRIMWAQRNPAARRSGAG---------------NIFIKNLNK 105
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVRL 283
+ ++ L D F +LS KV + G SRG+GFV FE ED Q A+D +NG + L
Sbjct: 106 EIDNKALYDTFSAFGTILSCKVAADE-KGESRGYGFVHFEKEEDAQKAIDTVNGKMLL 162
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 21/176 (11%)
Query: 115 LYVGNLPYSM-TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+YV NLP S T+ L ++F + GT+ S + D D+SRGFGFV + E A A+
Sbjct: 188 IYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDE-NDKSRGFGFVNFENSEAANAAVEA 246
Query: 174 FDGSQIG-------GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK---IYAGNL 223
+ +I GR +K + ER ++ + + D +K +Y +L
Sbjct: 247 MNEKEIETDRKLFVGRAMKKH--------ERERELKRIHDKIRQERDEKNKNSNLYIKHL 298
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+T LRD F + S K++ + G SRGFGFV F++A++ +A+ M+G
Sbjct: 299 PEDVTEDALRDKFSKFGTITSLKIMTDN-NGDSRGFGFVNFDSADEAAAAIQEMHG 353
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 15/168 (8%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL + + +L + F+ GT+ S ++ D + SRG+GFV E+A++AI
Sbjct: 95 AGNIFIKNLNKEIDNKALYDTFSAFGTILSCKVAADEKGE-SRGYGFVHFEKEEDAQKAI 153
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL-TSQ 230
+G + + V V + ER G + + IY NL T+
Sbjct: 154 DTVNGKMLLKQVVTVT--KFLSRKEREQQGGRTYTN----------IYVKNLPDSYATND 201
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L+ F+ + G +++ + + +SRGFGFV FE +E +A++AMN
Sbjct: 202 DLKKLFE-KFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAVEAMN 248
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
E E+E + + + +E + K S+ LY+ +LP +T +L + F++ GT+ S +I+
Sbjct: 268 ERERELKRIHDKIRQERDEKNKNSN----LYIKHLPEDVTEDALRDKFSKFGTITSLKIM 323
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D D SRGFGFV S +EA AI+ GS I G+ + V
Sbjct: 324 TDNNGD-SRGFGFVNFDSADEAAAAIQEMHGSMIDGKPLYV 363
>gi|156845624|ref|XP_001645702.1| hypothetical protein Kpol_1043p34 [Vanderwaltozyma polyspora DSM
70294]
gi|156116369|gb|EDO17844.1| hypothetical protein Kpol_1043p34 [Vanderwaltozyma polyspora DSM
70294]
Length = 442
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL S+ L + F G + + +++ D+ + + FV +A A++
Sbjct: 79 LYVGNLDKSINEDILKQYFQVGGPITNVKVINDK--NNEANYAFVEYSQHHDASIALKTL 136
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G QI T+K+N+ Q+ D ++ G+L + + L
Sbjct: 137 NGKQIENNTLKINW--------------AFQSQQNTTSDETFNLFIGDLNVDVDDETLVA 182
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF+ + A V+++ TGRSRG+GFV+F +D Q A+D M G
Sbjct: 183 AFKDFKSFIQAHVMWDMQTGRSRGYGFVSFSNLDDAQVAMDTMQG 227
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 49/80 (61%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE L++G+L + +L F + + A +++D T RSRG+GFV+ ++++A+
Sbjct: 160 SDETFNLFIGDLNVDVDDETLVAAFKDFKSFIQAHVMWDMQTGRSRGYGFVSFSNLDDAQ 219
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
A+ GS++ GR +++N+
Sbjct: 220 VAMDTMQGSELNGRQLRINW 239
>gi|406956570|gb|EKD84644.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 81
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+LP+++ + L E+FA+AG V SA++V DR T RSRGFGFV M + EEA+ A++
Sbjct: 1 MFVGSLPWAVDDAKLGEIFAQAGNVVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNL 60
Query: 175 DGSQIGGRTVKVNFPEVPR 193
+G+ + GR + VN PR
Sbjct: 61 NGADVEGRKIVVNIAR-PR 78
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
++ G+L W + L + F ++SA+V+ +R TGRSRGFGFV T E+ Q+A+ +
Sbjct: 1 MFVGSLPWAVDDAKLGEIFAQAGNVVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNL 60
Query: 278 NG 279
NG
Sbjct: 61 NG 62
>gi|295672357|ref|XP_002796725.1| 28 kDa ribonucleoprotein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283705|gb|EEH39271.1| 28 kDa ribonucleoprotein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 474
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
++++ + E+EE V ++ +V + E L++GNL +++ L F E G +A IV
Sbjct: 205 KSQKRKAEDEEEVVAPKKTRVEPT-EGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIV 263
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ 205
DR + RS+GFG+V + E+A +A +++ GR + V+F AA + Q
Sbjct: 264 TDRDSGRSKGFGYVEFTNAEDAVKAHAAKKDTELDGRKLNVDFANAR---SNAAPRDRAQ 320
Query: 206 NSYQGFVD--SPHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGF 261
+ Q F D SP ++ GN+ + + + F +L ++ + +GR +GFG+
Sbjct: 321 SRAQNFGDQKSPESDTLFIGNIAFSADESMISETFAEYGSILGVRLPTDPESGRPKGFGY 380
Query: 262 VTFETAEDLQSALDAMNG 279
V F + ++ +SA +++NG
Sbjct: 381 VQFSSIDEARSAFESLNG 398
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L++GN+ +S S ++E FAE G++ + D + R +GFG+V S++EA+
Sbjct: 331 SPESDTLFIGNIAFSADESMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEAR 390
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
A +GS++ GR ++++F PR
Sbjct: 391 SAFESLNGSELAGRAMRLDF-STPR 414
>gi|15230291|ref|NP_188544.1| RNA-binding protein 47B [Arabidopsis thaliana]
gi|122246579|sp|Q0WW84.1|RB47B_ARATH RecName: Full=Polyadenylate-binding protein RBP47B;
Short=Poly(A)-binding protein RBP47B; AltName:
Full=RNA-binding protein 47B; Short=AtRBP47B
gi|110741040|dbj|BAE98614.1| putative nuclear acid binding protein [Arabidopsis thaliana]
gi|111074446|gb|ABH04596.1| At3g19130 [Arabidopsis thaliana]
gi|332642675|gb|AEE76196.1| RNA-binding protein 47B [Arabidopsis thaliana]
Length = 435
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 16/202 (7%)
Query: 82 QDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS 141
Q P+ Q ++ ++ + + D+ L+VG+L + M + L F+ G V+S
Sbjct: 77 QHHPQLHQYGSYQQHQHQQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSS 136
Query: 142 AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAA 199
+++ +++T +S G+GFV S A+E ++ + GS + + ++N+ G +RA
Sbjct: 137 VKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAV 196
Query: 200 -MGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSR 257
GP L ++ G+L +T L + F + P + SAKV+ + TGRS+
Sbjct: 197 ENGPDL------------SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSK 244
Query: 258 GFGFVTFETAEDLQSALDAMNG 279
G+GFV F + AL MNG
Sbjct: 245 GYGFVRFGDENERSRALTEMNG 266
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F++ +V SA++V D T RS+G+GFV G E A+
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG-- 231
+G+ R ++V R A+ + Q+S Q + + G++G+G S G
Sbjct: 264 MNGAYCSNRQMRVGIATPKR-----AIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGES 318
Query: 232 ------------------LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
LR F ++S K+ +G GFV F + + A
Sbjct: 319 TNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFADRKSAEDA 372
Query: 274 LDAMNGVV 281
++++NG V
Sbjct: 373 IESLNGTV 380
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A ++VG + + L + F++ G V S +I +G GFV + A++AI
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFADRKSAEDAIE 374
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G+ IG TV++++ P R G + Y
Sbjct: 375 SLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWNGGY 410
>gi|408394044|gb|EKJ73300.1| hypothetical protein FPSE_06565 [Fusarium pseudograminearum CS3096]
Length = 568
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 10/192 (5%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
+++ E EE P++ + R ++V L + + L E F G V A+IV DR+
Sbjct: 155 DDDRRETKREEGNPQLTEDERDRRTVFVQQLAARLRTRELKEFFERVGPVNEAQIVKDRI 214
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
+ RS+G G+V + E +A++L G ++ G V V E + R A P+ +
Sbjct: 215 SQRSKGVGYVEFKNEESVTQALQLT-GQKLLGIPVIVQVTEAEKN--RQARNPEASGPHP 271
Query: 210 GFVDSP-HKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETA 267
+ P H++Y GN+ + +T Q L+ F +P G L + + GRSRG+GFV F A
Sbjct: 272 NSI--PFHRLYVGNIHFNVTEQDLQAVF--EPFGELEFVQLQKDENGRSRGYGFVQFRDA 327
Query: 268 EDLQSALDAMNG 279
+ AL+ MNG
Sbjct: 328 GQAREALEKMNG 339
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGN+ +++T L VF G + ++ D RSRG+GFV +A+EA+
Sbjct: 278 RLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDE-NGRSRGYGFVQFRDAGQAREALEK 336
Query: 174 FDGSQIGGRTVKV 186
+G + GR ++V
Sbjct: 337 MNGFDLAGRPIRV 349
>gi|303284108|ref|XP_003061345.1| hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla
CCMP1545]
gi|226457696|gb|EEH54995.1| hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla
CCMP1545]
Length = 301
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 10/176 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVF------AEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
E R Y+GNL + T+ SL F + G+V +AE+ + RS+G+G V S
Sbjct: 115 EGCRCYIGNLAWETTAESLVGAFEDYPHFSSVGSVVNAEVA-KQPGGRSKGWGLVDFESP 173
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
A+ AI S + GR++ V + R G N+ + S +I NL
Sbjct: 174 AAAESAIATLHNSDLQGRSIIV---RLERAGGATKGPGGGANAGRPEASSGLQIVVRNLP 230
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
W TS+ LR FQ ++ A + TGRS+G+G V FET E Q+A+ NGV
Sbjct: 231 WTTTSEDLRQVFQQVGNVVKADAVCHADTGRSKGWGTVLFETREQAQAAIQGFNGV 286
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 13/179 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A RLYVGNLP+S L +F+ G + +I R RSRG+G V S EA+ AI
Sbjct: 7 ANRLYVGNLPWSTDVDELRAIFSSCGAITHVDIPKGR-QGRSRGYGIVEYSSAAEAQAAI 65
Query: 172 RLFDGSQIGGRTVKV---NFPEVPRGGERAAMGPKLQNSYQGFVDSP----HKIYAGNLG 224
+G +G R + V N P + + S ++P + Y GNL
Sbjct: 66 AQLEGHTLGDRNLTVREDNAPTKTANSGGGSKSGGGRGSGNVMGETPAAEGCRCYIGNLA 125
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIF-----ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
W T++ L AF+ P S + ++ GRS+G+G V FE+ +SA+ ++
Sbjct: 126 WETTAESLVGAFEDYPHFSSVGSVVNAEVAKQPGGRSKGWGLVDFESPAAAESAIATLH 184
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++ V NLP++ TS L +VF + G V A+ V T RS+G+G V + E+A+ AI+
Sbjct: 223 QIVVRNLPWTTTSEDLRQVFQQVGNVVKADAVCHADTGRSKGWGTVLFETREQAQAAIQG 282
Query: 174 FDGSQIGGRTVKVNF 188
F+G ++ R +++
Sbjct: 283 FNGVELESRPMQIKL 297
>gi|34395215|dbj|BAC83714.1| RNA Binding Protein-like [Oryza sativa Japonica Group]
gi|50508741|dbj|BAD31317.1| RNA Binding Protein-like [Oryza sativa Japonica Group]
Length = 206
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
DE L++G+L Y M S L+ FA G V S +++ ++ + S G+GF+ S A+
Sbjct: 10 DEIRSLWIGDLQYWMDESYLSNAFAPMGQQVTSVKVIRNKQSGHSEGYGFIEFQSHAAAE 69
Query: 169 EAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLGW 225
A+ F+G + + K+N+ G RAA D P H I+ G+L
Sbjct: 70 YALANFNGRMMLNVDQLFKLNWASSGAGERRAA------------DDGPEHTIFVGDLAS 117
Query: 226 GLTSQGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+T L +AF+ P + AKV+F++ TGRS+G+GFV F + A+ MNG
Sbjct: 118 DVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFGDENEQTRAMTEMNGAT 174
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T S L E F + +V A++V+D+VT RS+G+GFV G E A+
Sbjct: 110 IFVGDLASDVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFGDENEQTRAMTE 169
Query: 174 FDGSQIGGRTVKV 186
+G+ + R +++
Sbjct: 170 MNGATLSTRQMRL 182
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 86/167 (51%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++T S L ++F + G V S + D T RS G+G+V + ++A A+ +
Sbjct: 33 LYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 92
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + + +++ + ++ M I+ NL + + L D
Sbjct: 93 NFTPLNNKPLRIMYSHRDPSIRKSGMA---------------NIFIKNLDKTIDHKALHD 137
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+S+G+GFV F++ E Q+A+D +NG++
Sbjct: 138 TFSSFGNILSCKVATDA-SGQSKGYGFVQFDSEEAAQNAIDKLNGML 183
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 19/170 (11%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +++ NL ++ +L + F+ G + S ++ D + +S+G+GFV S E A+ AI
Sbjct: 119 ANIFIKNLDKTIDHKALHDTFSSFGNILSCKVATD-ASGQSKGYGFVQFDSEEAAQNAID 177
Query: 173 LFDGSQIGGRTVKV-NFPEVPRGGER--AAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
+G I + V V NF R ER A K N IY NL T
Sbjct: 178 KLNGMLINDKQVYVGNFL---RKQERDSALSNIKFNN-----------IYVKNLAESTTD 223
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L+ F+ + G +++ V+ G+S+ FGFV FE +D A++A+NG
Sbjct: 224 EDLKSIFE-EHGAITSAVVMRDADGKSKCFGFVNFENVDDAAKAVEALNG 272
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 12/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL S T L +F E G + SA ++ D +S+ FGFV +V++A +A+
Sbjct: 212 IYVKNLAESTTDEDLKSIFEEHGAITSAVVMRD-ADGKSKCFGFVNFENVDDAAKAVEAL 270
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK-----IYAGNLGWGLTS 229
+G + + V + + ER +L+ ++ ++S K +Y NL +
Sbjct: 271 NGKKFDDKEWYVG--KAQKKSEREL---ELKGRFEQSLESVEKYQAVNLYIKNLDDSVND 325
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L++ F + S KV+ + +G SRG GFV F T E+ AL +NG
Sbjct: 326 EKLKELFSDFGTITSCKVMHDP-SGISRGSGFVAFSTPEEASRALAELNG 374
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A LY+ NL S+ L E+F++ GT+ S ++++D + SRG GFV + EEA A
Sbjct: 310 QAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDP-SGISRGSGFVAFSTPEEASRA 368
Query: 171 IRLFDGSQIGGRTVKV 186
+ +G + + + V
Sbjct: 369 LAELNGKMVVSKPLYV 384
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
P +Y G+L + +T L D F ++S +V + T RS G+G+V + +D AL
Sbjct: 30 PTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAL 89
Query: 275 DAMN 278
D +N
Sbjct: 90 DVLN 93
>gi|149016335|gb|EDL75581.1| nucleolin, isoform CRA_e [Rattus norvegicus]
Length = 505
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 277 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAK 332
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 333 EALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQP------------SKTLFVKGLSEDTT 379
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F+G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 380 EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 425
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 112 AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
AAR L NL +++T L EVF +A EI RS+G ++ S +A++
Sbjct: 187 AARTLLAKNLSFNITEDELKEVFEDA-----VEIRLVSQDGRSKGIAYIEFKSEADAEKN 241
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR+V + + G+R K +++ G + NL + T +
Sbjct: 242 LEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSG---ESKTLVLSNLSYSATEE 295
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L++ F+ + + + G+S+G+ F+ F + ED + AL++ N
Sbjct: 296 TLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAKEALNSCN 339
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 361 ARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEED 417
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 418 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 444
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I GR V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGRPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDDKLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +S +V+ + G+SRGFGFV+FE ED Q A+D MNG
Sbjct: 210 IFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDEMNG 253
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F++ G S ++ D +SRGFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
A+ A+ +G ++ G+ + V E+ R E+ M YQG +
Sbjct: 244 AQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQ--MKQDRMTRYQGV-----NL 296
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL G+ + LR F + SAKV+ + GRS+GFGFV F + E+ A+ MN
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMMD--GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 279 GVV 281
G +
Sbjct: 355 GRI 357
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ D RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMD--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G VAS + D VT RS G+ +V + + ++A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 118 EELNYTIIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDVAIDNKA 162
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + TG S+G+GFV +ET E A+ +NG++
Sbjct: 163 LHDTFAAFGNILSCKVAQDE-TGASKGYGFVHYETDEAASQAIKHVNGML 211
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D T S+G+GFV + E A +AI+
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-TGASKGYGFVHYETDEAASQAIKHV 207
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K + F + +Y N+ +T R
Sbjct: 208 NGMLLNEKKVYVGH-HIPKKDRQS----KFEEMKANFTN----VYVKNIAADVTEDDFRQ 258
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T E A+D +N
Sbjct: 259 LFE-KYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAVDELN 301
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 82/223 (36%), Gaps = 65/223 (29%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T ++F + G V S+ + D+ +SRGFGFV + E A +A+
Sbjct: 242 VYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQ-EGKSRGFGFVNFTTHESAFKAVDEL 300
Query: 175 DGSQIGGRTVKVNFPEVPRGGE----RAAMGPKLQ--NSYQGFVDSPHKIYAGNLGWGLT 228
+ G+ + V + E ++ +L+ N YQG +Y NL +
Sbjct: 301 NNKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV-----NLYIKNLDDDVD 355
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYT----------------------------------- 253
LR+ F+ + SAKV+ E T
Sbjct: 356 DDKLREMFKDFGSITSAKVMRETPTEGDEDKKEKDESDKENQEEVKEEVKEESKEESKDE 415
Query: 254 ------------------GRSRGFGFVTFETAEDLQSALDAMN 278
G+S+GFGFV F +D A+ MN
Sbjct: 416 TKEGEEDKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMN 458
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 26/197 (13%)
Query: 95 EEAVEEEEEPKVAASDEAAR----------LYVGNLPYSMTSSSLAEVFAEAGTVASAEI 144
EE ++E P AS E+ + LYVG L S++ + L ++F+ G+VAS +
Sbjct: 19 EEQPQQEATPASTASSESQQAGDNDVTSTSLYVGELDPSVSEALLYDLFSPIGSVASIRV 78
Query: 145 VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKL 204
D +T S G+ +V E K+AI + + I G+ ++ + + P L
Sbjct: 79 CRDAITKTSLGYAYVNFSDHEAGKQAIEKLNYTPIKGKLCRIMW---------SQRDPSL 129
Query: 205 QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
+ G I+ NL + ++ L D F +LS+K+ + TG+S+GFGFV F
Sbjct: 130 RKKGHG------NIFIKNLNQDIDNKALFDTFSVFGNILSSKIATDE-TGKSKGFGFVHF 182
Query: 265 ETAEDLQSALDAMNGVV 281
E A+DA+NG++
Sbjct: 183 EEESAANEAIDALNGML 199
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + + +L + F+ G + S++I D T +S+GFGFV A EAI
Sbjct: 137 IFIKNLNQDIDNKALFDTFSVFGNILSSKIATDE-TGKSKGFGFVHFEEESAANEAIDAL 195
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + G+ + V P + R ER + +L+ + F + +Y N+ T + ++
Sbjct: 196 NGMLLNGQEIYVA-PHLTRK-ERDS---QLEETKAHFTN----VYVKNIDLETTDEEFKE 246
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F G+ G +++ + G+ +GFGFV +E D A++ +NG
Sbjct: 247 FF-GKIGTVTSVALERGPDGKLKGFGFVNYEDHNDAVKAVEELNG 290
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVTMGSVEEAKEAIRL 173
+YV N+ T E F + GTV S + +R D + +GFGFV +A +A+
Sbjct: 230 VYVKNIDLETTDEEFKEFFGKIGTVTS--VALERGPDGKLKGFGFVNYEDHNDAVKAVEE 287
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS--------YQGFVDSPHKIYAGNLGW 225
+G++ + + V + ER K S YQG ++ NL
Sbjct: 288 LNGAEFKDQELFVG--RAQKKYERIQSLKKQYESTRLEKMAKYQGV-----NLFVKNLDD 340
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + L++ F + S KV+ G+S+GFGFV F + E+ A+ N
Sbjct: 341 SIDDEKLQEEFAPFGNITSVKVM-RTENGKSKGFGFVCFSSPEEATKAITEKN 392
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A + L+V NL S+ L E FA G + S +++ +S+GFGFV S EEA
Sbjct: 326 AKYQGVNLFVKNLDDSIDDEKLQEEFAPFGNITSVKVMRTE-NGKSKGFGFVCFSSPEEA 384
Query: 168 KEAIRLFDGSQIGGRTVKV 186
+AI + + G+ + V
Sbjct: 385 TKAITEKNQQIVAGKPLYV 403
>gi|396471523|ref|XP_003838892.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
gi|312215461|emb|CBX95413.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
Length = 490
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 11/202 (5%)
Query: 88 EQEEEEEEEAVEEEEEPKV---------AASDEAARLYVGNLPYSMTSSSLAEVFAEAGT 138
E+E ++ EE EP + A ++ L+VGNL +++ L F G
Sbjct: 200 EEEAPSKKRKAEEAAEPAIKKTKTVEEPAGAEGIKNLFVGNLSWNIDEDWLRREFEGFGE 259
Query: 139 VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERA 198
+ I+ DR T R +GFG+V + +A +A ++ GR + V+F PR A
Sbjct: 260 IVGCRIITDRETGRGKGFGYVEFATSADAAKAQAEMHQYELDGRPLNVDF-STPRQKPDA 318
Query: 199 AMGPKLQNSYQGFVDSP-HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSR 257
N Y +P + ++ GNL + T+ +++ F + + +R TG +
Sbjct: 319 GKTNDRANKYGDKRSAPSNTLFLGNLSFDCTNDSIQEIFAEYGNITRVSLPTDRDTGSIK 378
Query: 258 GFGFVTFETAEDLQSALDAMNG 279
GFG+V F + E+ +ALDA+NG
Sbjct: 379 GFGYVDFGSQEEATAALDALNG 400
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL + T+ S+ E+FAE G + + DR T +GFG+V GS EEA A+
Sbjct: 339 LFLGNLSFDCTNDSIQEIFAEYGNITRVSLPTDRDTGSIKGFGYVDFGSQEEATAALDAL 398
Query: 175 DGSQIGGRTVKVNF 188
+G I GR +++++
Sbjct: 399 NGQDIAGRNIRIDY 412
>gi|221480563|gb|EEE19030.1| hypothetical protein TGGT1_105690 [Toxoplasma gondii GT1]
gi|221505534|gb|EEE31179.1| RNA-binding protein, putative [Toxoplasma gondii VEG]
Length = 430
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS---VEEAKEA 170
+L+VG L S T+ SL F + G VA +E+++D+ T RSRGFGF+T + V +
Sbjct: 124 KLFVGGLSRSTTTDSLRTYFQQYGDVADSEVLFDKFTGRSRGFGFITFTTPDPVARVADM 183
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
DG+Q+ R +PR R GP G +++ G + + +
Sbjct: 184 RHTVDGTQVEVRRA------IPREEARDHGGP-------GADRDAGRLFVGGISDDVNDE 230
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
LR F+ + SA V+ +R R RGFGFV F +D + A+
Sbjct: 231 SLRAYFRHYGEIQSANVMVDRQNNRPRGFGFVIFRNPDDAEKAI 274
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L T+ LR FQ + ++V+F+++TGRSRGFGF+TF T + + D
Sbjct: 124 KLFVGGLSRSTTTDSLRTYFQQYGDVADSEVLFDKFTGRSRGFGFITFTTPDPVARVADM 183
Query: 277 MNGV 280
+ V
Sbjct: 184 RHTV 187
>gi|237838585|ref|XP_002368590.1| heterogeneous nuclear ribonucleoprotein A3, putative [Toxoplasma
gondii ME49]
gi|211966254|gb|EEB01450.1| heterogeneous nuclear ribonucleoprotein A3, putative [Toxoplasma
gondii ME49]
Length = 430
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS---VEEAKEA 170
+L+VG L S T+ SL F + G VA +E+++D+ T RSRGFGF+T + V +
Sbjct: 124 KLFVGGLSRSTTTDSLRTYFQQYGDVADSEVLFDKFTGRSRGFGFITFTTPDPVARVADM 183
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
DG+Q+ R +PR R GP G +++ G + + +
Sbjct: 184 RHTVDGTQVEVRRA------IPREEARDHGGP-------GADRDAGRLFVGGISDDVNDE 230
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
LR F+ + SA V+ +R R RGFGFV F +D + A+
Sbjct: 231 SLRAYFRHYGEIQSANVMVDRQNNRPRGFGFVIFRNPDDAEKAI 274
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L T+ LR FQ + ++V+F+++TGRSRGFGF+TF T + + D
Sbjct: 124 KLFVGGLSRSTTTDSLRTYFQQYGDVADSEVLFDKFTGRSRGFGFITFTTPDPVARVADM 183
Query: 277 MNGV 280
+ V
Sbjct: 184 RHTV 187
>gi|157137418|ref|XP_001663981.1| spliceosome associated protein [Aedes aegypti]
gi|108869713|gb|EAT33938.1| AAEL013795-PA [Aedes aegypti]
Length = 362
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 91/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +YVG L ++ + L E+F +AG V + + DRVT +G+GFV E
Sbjct: 6 IAERNQDATIYVGGLDDKVSETLLWEMFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLGEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ ++VN +++Q +D I+ GNL
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN----------------KASAHQKNLDVGANIFIGNLDP 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG S+GF F+ F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFINFASFEASDAAMDAMNG 164
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A +++GNL + L + F+ G + + +I+ D T S+GF F+ S E +
Sbjct: 97 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFINFASFEASD 156
Query: 169 EAIRLFDGSQIGGRTVKVN--FPEVPRGGERAAMGPKL---QNSYQGFVDSPHKIYA 220
A+ +G + R + V+ F + +G + +L QN D PH+++A
Sbjct: 157 AAMDAMNGQYLCNRPISVSYAFKKDSKGERHGSAAERLLAAQNPLS-HADRPHQLFA 212
>gi|238879474|gb|EEQ43112.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 399
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 5/176 (2%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
A+++E A L+VG L +++ + L F G V A ++ +R T +SRG+G+V S
Sbjct: 161 AASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKS 220
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP--HKIYAGNL 223
A++A+ G +I GR + + ++ G A+ + G SP ++ GNL
Sbjct: 221 AAEKALEEMQGKEIDGRPINL---DMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNL 277
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L + F ++S +V T + +GFG+V F + ++ ++AL+AMNG
Sbjct: 278 SFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNG 333
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ +L VF E G V S + T + +GFG+V SV+EAK A+
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 175 DGSQIGGRTVKVNFPEVPR 193
+G I GR +++F PR
Sbjct: 332 NGEYIEGRPCRLDF-STPR 349
>gi|260940088|ref|XP_002614344.1| hypothetical protein CLUG_05830 [Clavispora lusitaniae ATCC 42720]
gi|238852238|gb|EEQ41702.1| hypothetical protein CLUG_05830 [Clavispora lusitaniae ATCC 42720]
Length = 222
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 10/179 (5%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
+P A + A +YVGNL ++ + L E+F +AG V S + DR++ +GFGFV
Sbjct: 6 KPSEAEKNPHASVYVGNLDPQVSETLLYELFIQAGPVRSLHLPKDRISREHQGFGFVEFR 65
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGN 222
+ ++A A+ LF G ++ GRT+K+ + E G + +++ GN
Sbjct: 66 TAQDADYAVELFRGVRLFGRTLKMKKTDPQSTTETETSG----------LSVGARLFVGN 115
Query: 223 LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L + Q LR+ F L+ V+ G +G GFV F E AL MNG +
Sbjct: 116 LNPLVDEQYLRETFNKFGALVGRPVLARDENGTPKGHGFVEFSDFESSDDALSKMNGAI 174
>gi|68473894|ref|XP_719050.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|68474099|ref|XP_718946.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440741|gb|EAL00044.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440849|gb|EAL00151.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
Length = 400
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 5/176 (2%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
A+++E A L+VG L +++ + L F G V A ++ +R T +SRG+G+V S
Sbjct: 161 AASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKS 220
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP--HKIYAGNL 223
A++A+ G +I GR + + ++ G A+ + G SP ++ GNL
Sbjct: 221 AAEKALEEMQGKEIDGRPINL---DMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNL 277
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L + F ++S +V T + +GFG+V F + ++ ++AL+AMNG
Sbjct: 278 SFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNG 333
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ +L VF E G V S + T + +GFG+V SV+EAK A+
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 175 DGSQIGGRTVKVNFPEVPR 193
+G I GR +++F PR
Sbjct: 332 NGEYIEGRPCRLDF-STPR 349
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 93/182 (51%), Gaps = 16/182 (8%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
EE+ ++ +A LYVG L S+ ++L E+F+ G VAS + D V+ +S G+ +V
Sbjct: 54 EEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYV 113
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+E+ ++AI + + + GR ++ + + R+ G I+
Sbjct: 114 NYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDG---------------NIF 158
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL + ++ L D F +LS KV + G+S+ FGFV +ET E Q+A++++NG
Sbjct: 159 IKNLHPAIDNKALHDTFSAFGKILSVKVATDD-LGQSKCFGFVHYETEEAAQAAIESVNG 217
Query: 280 VV 281
++
Sbjct: 218 ML 219
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ + T E+FA G + S + D +S+GFGFV E A +A+
Sbjct: 250 IYVKNIDLAYTEKEFEELFAPFGKITSIYLEKD-AEGKSKGFGFVNFEEHEAAAKAVEEL 308
Query: 175 DGSQIGGRTVKVNFPEVPRGGERA--------AMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ +I G+ + V + R ER A+ + + YQG ++ NL
Sbjct: 309 NDKEINGQKIYVGRAQKKR--ERTEELKKQYEAVRLEKLSKYQGV-----NLFVKNLDEQ 361
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ S+ L + F+ + S+KV+ + G+S+GFGFV F T E+ A+ MN
Sbjct: 362 IDSEKLEEEFKPFGTITSSKVMVDD-AGKSKGFGFVCFSTPEEATKAITEMN 412
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E +E +++ EAV E+ K + L+V NL + S L E F GT+
Sbjct: 323 AQKKRERTEELKKQYEAVRLEKLSKY----QGVNLFVKNLDEQIDSEKLEEEFKPFGTIT 378
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
S++++ D +S+GFGFV + EEA +AI + + G+ + V
Sbjct: 379 SSKVMVDDAG-KSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYV 423
>gi|125558527|gb|EAZ04063.1| hypothetical protein OsI_26200 [Oryza sativa Indica Group]
Length = 323
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
DE L++G+L Y M S L+ FA G V S +++ ++ + S G+GF+ S A+
Sbjct: 125 DEIRSLWIGDLQYWMDESYLSNAFAPMGQQVTSVKVIRNKQSGHSEGYGFIEFQSHAAAE 184
Query: 169 EAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLGW 225
A+ F+G + + K+N+ G RAA D P H I+ G+L
Sbjct: 185 YALANFNGRMMLNVDQLFKLNWASSGAGERRAA------------DDGPEHTIFVGDLAS 232
Query: 226 GLTSQGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+T L +AF+ P + AKV+F++ TGRS+G+GFV F + A+ MNG
Sbjct: 233 DVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFGDENEQTRAMTEMNGAT 289
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T S L E F + +V A++V+D+VT RS+G+GFV G E A+
Sbjct: 225 IFVGDLASDVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFGDENEQTRAMTE 284
Query: 174 FDGSQIGGRTVKV 186
+G+ + R +++
Sbjct: 285 MNGATLSTRQMRL 297
>gi|260943169|ref|XP_002615883.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
gi|238851173|gb|EEQ40637.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
Length = 385
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 15/169 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL- 173
LYVG LP S+ +L E F+ +G V S +I+ D+ +GF + + V+EA A L
Sbjct: 46 LYVGGLPKSINEDALNEKFSASGPVFSVKILNDK---NKQGFNYAFVEFVDEAGAAAALQ 102
Query: 174 -FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
F+GS +K+N+ A N+ Q D + I+ G+L + + L
Sbjct: 103 EFNGSSFENSMLKINY----------AYQSSTFNATQNSDDPTYNIFVGDLSPEVDDESL 152
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F L A V+++ T RSRG+GFVTF D ++AL MNG V
Sbjct: 153 HKFFSAFESLKQAHVMWDMQTSRSRGYGFVTFANLADAETALSTMNGKV 201
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+ D ++VG+L + SL + F+ ++ A +++D T RSRG+GFVT ++ +A
Sbjct: 131 SDDPTYNIFVGDLSPEVDDESLHKFFSAFESLKQAHVMWDMQTSRSRGYGFVTFANLADA 190
Query: 168 KEAIRLFDGSQIGGRTVKVNFP----EVPRGGERAAMGPKLQNSYQ--GFVDSP 215
+ A+ +G + GR ++ N+ + RG R + + YQ GF +SP
Sbjct: 191 ETALSTMNGKVLNGRAIRCNWASHKQQNSRGAPRQNNQRQFRPQYQRPGFNESP 244
>gi|302036839|ref|YP_003797161.1| RNA-binding protein [Candidatus Nitrospira defluvii]
gi|190343253|gb|ACE75641.1| RNA-binding protein [Candidatus Nitrospira defluvii]
gi|300604903|emb|CBK41236.1| RNA-binding protein [Candidatus Nitrospira defluvii]
Length = 107
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVG LPY+ T S L+ +F+ GTV SA ++ D+ T +SRGFGFV M + EEAK AI
Sbjct: 4 KLYVGGLPYAATESQLSNLFSAHGTVESARVITDKFTGQSRGFGFVEMSTAEEAKAAITA 63
Query: 174 FDGSQIGGRTVKVN 187
+GS + GR + VN
Sbjct: 64 LNGSDMDGRQLTVN 77
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y G L + T L + F + SA+VI +++TG+SRGFGFV TAE+ ++A+
Sbjct: 3 NKLYVGGLPYAATESQLSNLFSAHGTVESARVITDKFTGQSRGFGFVEMSTAEEAKAAIT 62
Query: 276 AMNG 279
A+NG
Sbjct: 63 ALNG 66
>gi|128842|sp|P08199.2|NUCL_MESAU RecName: Full=Nucleolin; AltName: Full=Protein C23
Length = 714
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDAK 537
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 538 EALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 584
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F+G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 585 EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 24/172 (13%)
Query: 112 AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
AAR L NL +++T L EVF +A EI +S+G ++ S +A++
Sbjct: 392 AARTLLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEADAEKN 446
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR+V + + G+R K +++ G + + NL + T +
Sbjct: 447 LEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSGESKT---LVLSNLSYSATEE 500
Query: 231 GLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L++ F+ K F + G+S+G+ F+ F + ED + AL++ N
Sbjct: 501 TLQEVFE--------KATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCN 544
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 566 ARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEED 622
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 623 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 649
>gi|149016331|gb|EDL75577.1| nucleolin, isoform CRA_b [Rattus norvegicus]
Length = 698
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 470 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAK 525
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 526 EALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 572
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F+G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 573 EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 618
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 24/172 (13%)
Query: 112 AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
AAR L NL +++T L EVF +A EI RS+G ++ S +A++
Sbjct: 380 AARTLLAKNLSFNITEDELKEVFEDA-----VEIRLVSQDGRSKGIAYIEFKSEADAEKN 434
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR+V + + G+R K +++ G + + NL + T +
Sbjct: 435 LEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSGESKT---LVLSNLSYSATEE 488
Query: 231 GLRDAFQGQPGLLSAKVIFERYT----GRSRGFGFVTFETAEDLQSALDAMN 278
L++ F+ K F + G+S+G+ F+ F + ED + AL++ N
Sbjct: 489 TLQEVFE--------KATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCN 532
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 554 ARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEED 610
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 611 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 637
>gi|452003351|gb|EMD95808.1| hypothetical protein COCHEDRAFT_1190998 [Cochliobolus
heterostrophus C5]
Length = 756
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 9/177 (5%)
Query: 111 EAAR--LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
E AR L+V +L +TS L E F+E+ + +A +V D+ T S+G+GFVT VE+A+
Sbjct: 38 EVARRQLFVRSLAPDVTSEDLTEYFSESYPIKNALVVLDKETRESKGYGFVTFADVEDAQ 97
Query: 169 EAIRLFDGSQIGGRTVKVNFPEV-PRGGE----RAAMGPKLQNSYQGFVDSPHKIYAGNL 223
A + +QI G+ +KV+F E R GE RAA K + Q KI NL
Sbjct: 98 RAKEELNNTQIKGKKIKVDFAEARQREGEEKRPRAADRIKAEREQQVKEAQVPKIIVRNL 157
Query: 224 GWGL-TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
W + T + L F+ G ++ + ++ G RGFGFV+ ++ + A+ +NG
Sbjct: 158 PWTIKTPEDLEKLFRSY-GKVNFANLPKKPNGELRGFGFVSLRGKKNAEKAMQELNG 213
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSM-TSSSLAEVFAEAGTVASAEIVYDRVTD 151
E E+ V+E + PK+ V NLP+++ T L ++F G V A + +
Sbjct: 139 EREQQVKEAQVPKI---------IVRNLPWTIKTPEDLEKLFRSYGKVNFANLPK-KPNG 188
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
RGFGFV++ + A++A++ +G +I GR + V++
Sbjct: 189 ELRGFGFVSLRGKKNAEKAMQELNGKEISGRPIAVDW 225
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
++V N+P+++ L E F + G + A +V DR T+R +G FV
Sbjct: 319 VFVRNVPFTVDDERLKEHFQQFGGIRYARVVVDRDTERPKGTAFV 363
>gi|356550323|ref|XP_003543537.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Glycine max]
Length = 410
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y + L+ F G V S +I+ +++T + G+GFV S A+
Sbjct: 11 EEVRTLWIGDLQYWVDEGYLSHCFGHTGEVISIKIIRNKLTGQPEGYGFVEFVSHAAAER 70
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ +T ++N+ G R P+ H I+ G+L +
Sbjct: 71 VLQTYNGTQMPATDQTFRLNWASFGIGERRPDAAPE------------HSIFVGDLAPDV 118
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F+ P + AKV+ + T RS+G+GFV F + A+ MNGV
Sbjct: 119 TDYLLQETFRAHYPSVRGAKVVTDPNTARSKGYGFVKFSDENERNRAMTEMNGV 172
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 29/192 (15%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V D T RS+G+GFV E A+
Sbjct: 109 IFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTARSKGYGFVKFSDENERNRAMTE 168
Query: 174 FDGSQIGGRTVKVN--FPEVPRGG--------------ERAAMGPKLQNSYQGFVDSPHK 217
+G R ++++ P+ G A P +Q + +
Sbjct: 169 MNGVYCSTRPMRISAATPKKTTGAYAAPAAPVPKPVYPVPAYTSPVVQVQPPDYDVNNTT 228
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
I+ GNL ++ + L+ ++S K+ +GFGFV F T + A+ M
Sbjct: 229 IFVGNLDLNVSEEELKQNSLQFGEIVSVKI------QPGKGFGFVQFGTRASAEEAIQKM 282
Query: 278 NG------VVRL 283
G VVR+
Sbjct: 283 QGKMIGQQVVRI 294
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL +++ L + + G + S +I +GFGFV G+ A+EAI+
Sbjct: 229 IFVGNLDLNVSEEELKQNSLQFGEIVSVKI------QPGKGFGFVQFGTRASAEEAIQKM 282
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF 211
G IG + V++++ R M P ++Y G+
Sbjct: 283 QGKMIGQQVVRISW---GRTLTARQMDPNQWSAYYGY 316
>gi|296422065|ref|XP_002840583.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636802|emb|CAZ84774.1| unnamed protein product [Tuber melanosporum]
Length = 559
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 97 AVEEEEEPK----VAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
A E E PK V+++ E A+ L+VG+L +++ L F + G +A+ +V DR +
Sbjct: 281 ATEAEPTPKKVKTVSSAQEGAKNLFVGSLSWNVDEGWLRNEFEQFGEIAAVRVVTDRESG 340
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNS 207
RS+GFG+V + E AK+A+ G I GRT+ V+F PE PR + ++
Sbjct: 341 RSKGFGYVEYTTNEAAKKALEEMKGKDIDGRTINVDFSAPRPENPR---------QDRSR 391
Query: 208 YQGFVDSPHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
G SP ++ NL + Q ++ F+G ++ ++ + +G+ +GF ++ ++
Sbjct: 392 LYGDQKSPESETVFVANLSFEADEQIVQTEFEGFGNIVGLRIPTDPESGQPKGFCYIQYD 451
Query: 266 TAEDLQSALDAMNGVV 281
+ + A++ MNG +
Sbjct: 452 RVDSARKAVEEMNGAL 467
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V + + ++A+
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 122
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 123 EELNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDVAIDNKA 167
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ET E A+ +NG++
Sbjct: 168 LHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGML 216
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A +AI+
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAASQAIKHV 212
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K + F + IY N+ +T RD
Sbjct: 213 NGMLLNEKKVYVGH-HIPKKDRQS----KFEEMKANFTN----IYVKNIANEVTDDEFRD 263
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F G +++ + G+SRGFGFV F T E A+D +NG
Sbjct: 264 LFTAF-GDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNG 307
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 81/222 (36%), Gaps = 66/222 (29%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T ++F G V S+ + D+ +SRGFGFV + E A +A+
Sbjct: 247 IYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQ-EGKSRGFGFVNFTTHEAAAKAVDDL 305
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+G G+ + V E+ + E A M + + YQG +Y NL
Sbjct: 306 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARM--EKASKYQGV-----NLYIKNLDDE 358
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYT--------------------------------- 253
+ + LR F + SAKV+ + T
Sbjct: 359 VDDEKLRQLFADFGPITSAKVMRDNATESGNEDEGSSDDKENEPKKEEGEEKAEEAKSED 418
Query: 254 -----------------GRSRGFGFVTFETAEDLQSALDAMN 278
G+S+GFGFV F +D A+ MN
Sbjct: 419 KEDADKKADKKSDKKPHGKSKGFGFVCFSNPDDATKAVAEMN 460
>gi|110681486|emb|CAL25353.1| ACBF-like dna binding protein [Platanus x acerifolia]
Length = 216
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 15/174 (8%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
++E ++VG+L Y M + L FA G V S +++ ++ T +S G+GFV S E A+
Sbjct: 25 TEENKTIWVGDLHYWMDGNYLNNCFAHTGEVISIKVIRNKQTGQSEGYGFVEFFSREAAE 84
Query: 169 EAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ ++ ++G+ + + ++N+ G R+ G S H I+ G+L
Sbjct: 85 KVLQNYNGTAMPNTEQPFRLNWASFSMGERRSEAG------------SDHSIFVGDLSSD 132
Query: 227 LTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+T L++ F + P + AKV+ + TGRS+G+GFV F + A+ MNG
Sbjct: 133 VTDTLLQETFASRYPSVKGAKVVIDANTGRSKGYGFVRFGDDNERSRAISEMNG 186
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFA-EAGTVASAE 143
P TEQ + E A SD + ++VG+L +T + L E FA +V A+
Sbjct: 96 PNTEQPFRLNWASFSMGERRSEAGSDHS--IFVGDLSSDVTDTLLQETFASRYPSVKGAK 153
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
+V D T RS+G+GFV G E AI +G+ R ++V
Sbjct: 154 VVIDANTGRSKGYGFVRFGDDNERSRAISEMNGAYCSNRPMRV 196
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 94/188 (50%), Gaps = 15/188 (7%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+ E E + AS E +Y+ N M L +VF++ G S +++ D + +S+GFGF
Sbjct: 177 DREAELRSKAS-EFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGF 234
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFV 212
V+ S E AK+A+ +G I G+ + V + V R E M +L+ YQG
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGV- 293
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
K+Y NL + + LR+ F ++ KV+ + G+S+GFGF+ F + ED
Sbjct: 294 ----KLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVM--QQEGQSKGFGFICFSSLEDATK 347
Query: 273 ALDAMNGV 280
A+ MNG
Sbjct: 348 AMIEMNGC 355
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
VAA A LYVG+L +T L F+ AG V S I D+VT RS G+ +V +
Sbjct: 3 VAAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLT 62
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A++A+ + I G+++++ + + R+ +G ++ NL
Sbjct: 63 DAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGN---------------VFIKNLDK 107
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ ++ L + F G +LS+KV+ + S+G+ FV F+ A++ MNG
Sbjct: 108 SIDNKTLYEHFSGFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNG 159
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L E F+ G + S++++ D S+G+ FV + A AI
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAI--- 154
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
++ G+ +K V R R +L++ F + IY N G + + L+D
Sbjct: 155 --EEMNGKLLKSCKVFVGRFKNRKDREAELRSKASEFTN----IYIKNFGGDMDDERLKD 208
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+F++ E + A++ MNG
Sbjct: 209 VFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNG 252
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ +LYV NL ++ L F+ G++ +++ + +S+GFGF+ S+E+A +A
Sbjct: 291 QGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVM--QQEGQSKGFGFICFSSLEDATKA 348
Query: 171 IRLFDGSQIGGRTVKV 186
+ +G +G + + +
Sbjct: 349 MIEMNGCFLGSKPISI 364
>gi|294936223|ref|XP_002781665.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Perkinsus
marinus ATCC 50983]
gi|239892587|gb|EER13460.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Perkinsus
marinus ATCC 50983]
Length = 482
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 30/194 (15%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT-------MG 162
D+ +++VG LP +L F++ G V + ++ DR T RSRGFGFVT +G
Sbjct: 168 DDTKKVFVGGLPREADKPALDAYFSQFGPVEDSVVMMDRFTGRSRGFGFVTFETKEQMLG 227
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKV----NFPEVPRGGERAAMG-----PKLQNSYQ---- 209
V A I G++V+V N ER + G P+ + Y
Sbjct: 228 CVAAAPHVIM--------GKSVEVRRSINDDGTSTAHERRSAGKGAGAPRNYDDYGSGKG 279
Query: 210 GFVD-SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
G D +P+K++ G L +TS+ LRD F L+ VI +R TG+SRGFG+VT+E +
Sbjct: 280 GHRDQNPNKLFVGGLPREITSEALRDFFIQYGNLVDCTVITDRMTGQSRGFGYVTYEDSS 339
Query: 269 DLQSAL-DAMNGVV 281
++A+ ++ N ++
Sbjct: 340 AAEAAISNSANNII 353
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG LP +TS +L + F + G + ++ DR+T +SRGFG+VT A+ AI
Sbjct: 288 KLFVGGLPREITSEALRDFFIQYGNLVDCTVITDRMTGQSRGFGYVTYEDSSAAEAAISN 347
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG 201
+ I G+ V V R G R + G
Sbjct: 348 SANNIIDGKWVDVK--HTTREGPRRSFG 373
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L S+T S L ++F + G V S + D + RS G+G+V + ++A A+ +
Sbjct: 27 LYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEML 86
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G ++V + + P ++ S G I+ NL + + L D
Sbjct: 87 NFTPLNGSPIRVMY---------SHRDPTIRKSGAG------NIFIKNLDKAIDHKALHD 131
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+S+G+GFV F++ E Q A++ +NG++
Sbjct: 132 TFSAFGNILSCKVATDP-SGQSKGYGFVQFDSEEAAQKAIEKLNGML 177
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL ++ +L + F+ G + S ++ D + +S+G+GFV S E A++AI
Sbjct: 112 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDP-SGQSKGYGFVQFDSEEAAQKAI 170
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + + V V R ER K++ + ++ NL T +
Sbjct: 171 EKLNGMLLNDKQVYVG--PFLRKQERDTATDKMRF---------NNVFVKNLSETTTEED 219
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F G+ G +++ V+ G+S+ FGFV FE AED A++A+NG
Sbjct: 220 LNKTF-GEFGTITSIVVMRDGDGKSKCFGFVNFENAEDAAKAVEALNG 266
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 7/170 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + T L + F E GT+ S ++ D +S+ FGFV + E+A +A+
Sbjct: 206 VFVKNLSETTTEEDLNKTFGEFGTITSIVVMRDG-DGKSKCFGFVNFENAEDAAKAVEAL 264
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQG 231
+G +I + V + + ER + + + S + D +Y NL + +
Sbjct: 265 NGKKIDDKEWFVG--KAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEK 322
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L++ F + S KV+ + G SRG GFV F T E+ AL MNG +
Sbjct: 323 LKELFSPFGTITSCKVMRDP-NGISRGSGFVAFSTPEEASRALLEMNGKI 371
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
+ +++ E E E + E+ A+D + A LY+ NL S+ L E+F+ GT+ S +
Sbjct: 278 KAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKLKELFSPFGTITSCK 337
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
++ D SRG GFV + EEA A+ +G + + + V
Sbjct: 338 VMRDP-NGISRGSGFVAFSTPEEASRALLEMNGKIVVSKPLYV 379
>gi|128844|sp|P13383.3|NUCL_RAT RecName: Full=Nucleolin; AltName: Full=Protein C23
gi|205792|gb|AAA41732.1| nucleolin [Rattus norvegicus]
Length = 713
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 485 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAK 540
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 541 EALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 587
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F+G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 588 EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 633
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 24/172 (13%)
Query: 112 AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
AAR L NL +++T L EVF +A EI RS+G ++ S +A++
Sbjct: 395 AARTLLAKNLSFNITEDELKEVFEDA-----VEIRLVSQDGRSKGIAYIEFKSEADAEKN 449
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR+V + + G+R K +++ G + + NL + T +
Sbjct: 450 LEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSGESKT---LVLSNLSYSATEE 503
Query: 231 GLRDAFQGQPGLLSAKVIFERYT----GRSRGFGFVTFETAEDLQSALDAMN 278
L++ F+ K F + G+S+G+ F+ F + ED + AL++ N
Sbjct: 504 TLQEVFE--------KATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCN 547
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 569 ARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEED 625
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 626 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 652
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 92/176 (52%), Gaps = 18/176 (10%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P VAA+ A LYVG+L +++ + L + F++ ++AS + D T +S +G+V S
Sbjct: 5 PSVAAA--PASLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVS 62
Query: 164 VEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
++A AI L + S + G+ ++V + + A+G ++ NL
Sbjct: 63 PQDAIRAIELKNNSTLNGKAMRVMWSRRDPDARKNAIG---------------NLFVKNL 107
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + GL+D F+ +LS+KV+ G+S+G+GFV FE+ E A++ +NG
Sbjct: 108 PESIDNAGLQDMFKKYGNILSSKVVMSE-DGKSKGYGFVQFESEESSNVAIEKLNG 162
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 89/173 (51%), Gaps = 13/173 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + L+V NLP S+ ++ L ++F + G + S+++V +S+G+GFV S E
Sbjct: 94 ARKNAIGNLFVKNLPESIDNAGLQDMFKKYGNILSSKVVMSE-DGKSKGYGFVQFESEES 152
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ AI +GS +G + + V + + +R GP + + +Y NL
Sbjct: 153 SNVAIEKLNGSTVGDKQLYVG--KFVKKSDRILPGPDARYT---------NLYMKNLDLD 201
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ L++ F G + + VI + G S+GFGFV ++ +D + A++AMNG
Sbjct: 202 VSEATLQEKFSSF-GKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKRAMEAMNG 253
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ ++L E F+ G + S I D + S+GFGFV + ++AK A+
Sbjct: 193 LYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIG-MSKGFGFVNYDNPDDAKRAMEAM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY------QGFVDSPHKIYAGNLGWGLT 228
+GS++G + + V R ++A L + + Q IY N+ ++
Sbjct: 252 NGSKLGSKIL-----YVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVS 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LRD F G++++ I G S+GFGFV F T E+ A++ +G
Sbjct: 307 DEELRDHFSA-CGIITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHG 356
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E EQ + E +E+ K S+ +YV N+ ++ L + F+ G +
Sbjct: 266 AQKKAEREQILHHQFEEKRKEQILKYKGSN----IYVKNIDDHVSDEELRDHFSACGIIT 321
Query: 141 SAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
SA+I+ D D+ S+GFGFV + EEA +A+ F G G+ + V
Sbjct: 322 SAKIMRD---DKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYV 366
>gi|224094731|ref|XP_002310211.1| predicted protein [Populus trichocarpa]
gi|222853114|gb|EEE90661.1| predicted protein [Populus trichocarpa]
Length = 184
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 93/171 (54%), Gaps = 17/171 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
++ A YVGNL ++ L E+F +AG V + + DRVT+ +G+GFV S E+A
Sbjct: 3 NQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADY 62
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI++ + ++ G+ ++VN +A+ K +D ++ GNL +
Sbjct: 63 AIKVLNMIKLYGKPIRVN---------KASQDKKS-------LDVGANLFIGNLDPDVDE 106
Query: 230 QGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L D F +++ K++ + TG SRGFGF+++++ E +A++AMNG
Sbjct: 107 KLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNG 157
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L++GNL + L + F+ G V + +I+ D T SRGFGF++ S E +
Sbjct: 90 DVGANLFIGNLDPDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASD 149
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI +G + R + V++
Sbjct: 150 AAIEAMNGQYLCNRQITVSY 169
>gi|161760644|ref|NP_036881.2| nucleolin [Rattus norvegicus]
gi|55250726|gb|AAH85751.1| Nucleolin [Rattus norvegicus]
gi|149016332|gb|EDL75578.1| nucleolin, isoform CRA_c [Rattus norvegicus]
Length = 714
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 486 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAK 541
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 542 EALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 588
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F+G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 589 EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 634
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 24/172 (13%)
Query: 112 AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
AAR L NL +++T L EVF +A EI RS+G ++ S +A++
Sbjct: 396 AARTLLAKNLSFNITEDELKEVFEDA-----VEIRLVSQDGRSKGIAYIEFKSEADAEKN 450
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR+V + + G+R K +++ G + + NL + T +
Sbjct: 451 LEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSGESKT---LVLSNLSYSATEE 504
Query: 231 GLRDAFQGQPGLLSAKVIFERYT----GRSRGFGFVTFETAEDLQSALDAMN 278
L++ F+ K F + G+S+G+ F+ F + ED + AL++ N
Sbjct: 505 TLQEVFE--------KATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCN 548
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 570 ARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEED 626
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 627 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 653
>gi|85111281|ref|XP_963862.1| hypothetical protein NCU03092 [Neurospora crassa OR74A]
gi|28925605|gb|EAA34626.1| predicted protein [Neurospora crassa OR74A]
Length = 428
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
+D+ + L+VGNL + + + L F + SA +V DR + RSRGFG+V + E+A+
Sbjct: 176 ADDKSTLWVGNLGWGIDDAILLAEFEDCEGAKSARVVTDRESGRSRGFGYVDFATNEQAQ 235
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGG---ERAAMGPKLQNSYQGFVDSPHK--IYAGNL 223
+A G+ + GR ++++F G ++AA + + G SP ++ GN+
Sbjct: 236 KAYDAKSGALLEGREMRLDFAAKDAGNKPQDKAAN----RAAKHGDTISPESDTLFVGNM 291
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + D F + S ++ ++ +GR +GF +VTF + ED ++A + +NG
Sbjct: 292 PFSADESVVSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSVEDAKNAFEQLNG 347
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGN+P+S S +++ F +VAS I D+ + R +GF +VT SVE+AK
Sbjct: 280 SPESDTLFVGNMPFSADESVVSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSVEDAK 339
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
A +GS + GR V++++ + PR
Sbjct: 340 NAFEQLNGSDLNGRPVRLDYAK-PR 363
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
D ++ GNLGWG+ L F+ G SA+V+ +R +GRSRGFG+V F T E Q
Sbjct: 176 ADDKSTLWVGNLGWGIDDAILLAEFEDCEGAKSARVVTDRESGRSRGFGYVDFATNEQAQ 235
Query: 272 SALDAMNGVV 281
A DA +G +
Sbjct: 236 KAYDAKSGAL 245
>gi|334350324|ref|XP_001371926.2| PREDICTED: ELAV-like protein 2-like [Monodelphis domestica]
Length = 522
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+SD L V LP SMT +FA G + S ++V DR T +S G+GFV +A
Sbjct: 180 SSDPKTNLIVNYLPQSMTQEEFYNLFATVGKIQSCKLVRDRSTGQSLGYGFVNYVDPRDA 239
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++A+ L + Q +T+KV+F R A +Y L +
Sbjct: 240 EQAVCLLNRLQCPPKTIKVSFARPSSSSIRDA-----------------NLYVSGLPRNM 282
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L F +++++++ +R +G SRG GF+ F+ + + A+ A+NG
Sbjct: 283 MQKDLEQLFSPFGRIITSRILIDRVSGASRGVGFILFDKKSEAEEAIKALNG 334
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++S A LYV LP +M L ++F+ G + ++ I+ DRV+ SRG GF+ E
Sbjct: 265 SSSIRDANLYVSGLPRNMMQKDLEQLFSPFGRIITSRILIDRVSGASRGVGFILFDKKSE 324
Query: 167 AKEAIRLFDGSQIGGRTVKV 186
A+EAI+ +G + G V +
Sbjct: 325 AEEAIKALNGQKPCGNRVPL 344
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + L ++F G V+ +I+ D T++ + FGFVTM S EA A+
Sbjct: 441 IFVYNLSPDSDENVLWQLFGPFGAVSKVKIIRDFNTNKCKRFGFVTMTSYNEAALAVASL 500
Query: 175 DGSQIGGRTVKVNF 188
+G +GGR ++V+F
Sbjct: 501 NGYCLGGRVLQVSF 514
>gi|297834824|ref|XP_002885294.1| RNA-binding protein 47B [Arabidopsis lyrata subsp. lyrata]
gi|297331134|gb|EFH61553.1| RNA-binding protein 47B [Arabidopsis lyrata subsp. lyrata]
Length = 435
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
+ D+ L+VG+L + M + L F+ G V+S +++ +++T +S G+GF+ S
Sbjct: 102 GSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFIEFLSRAA 161
Query: 167 AKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPHKIYAGNL 223
A+E ++ + GS + + ++N+ G +RA GP L I+ G+L
Sbjct: 162 AEEVLQNYSGSLMPNSDQPFRINWASFSTGEKRAVENGPDL------------SIFVGDL 209
Query: 224 GWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+T L + F + P + SAKV+ + TGRS+G+GFV F + AL MNG
Sbjct: 210 SPDVTDALLHETFFDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNG 266
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 22/183 (12%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T + L E F + +V SA++V D T RS+G+GFV G E A+
Sbjct: 204 IFVGDLSPDVTDALLHETFFDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 174 FDGSQIGGRTVKVNFPEVPR---------------GGERAAMGPKLQNSYQGFVDSPHKI 218
+G+ R ++V R G A G S + I
Sbjct: 264 MNGAYCSNRQMRVGVATPKRAIANQQQHSSQALILAGGHGANGSMAHGSQSDGESTNATI 323
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ G + +T + LR F ++S K+ +G GFV F + + A++ +N
Sbjct: 324 FVGGIDADVTDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFAERKSAEDAIETLN 377
Query: 279 GVV 281
G V
Sbjct: 378 GTV 380
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A ++VG + +T L + F++ G V S +I +G GFV + A++AI
Sbjct: 321 ATIFVGGIDADVTDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFAERKSAEDAIE 374
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G+ IG TV++++ P R G + Y
Sbjct: 375 TLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWNGGY 410
>gi|149016333|gb|EDL75579.1| nucleolin, isoform CRA_d [Rattus norvegicus]
gi|149016334|gb|EDL75580.1| nucleolin, isoform CRA_d [Rattus norvegicus]
Length = 496
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 268 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAK 323
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 324 EALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQP------------SKTLFVKGLSEDTT 370
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F+G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 371 EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 416
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 18/180 (10%)
Query: 102 EEPKVAASDE--AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
E+PK S + AAR L NL +++T L EVF +A EI RS+G +
Sbjct: 166 EKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA-----VEIRLVSQDGRSKGIAY 220
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
+ S +A++ + G++I GR+V + + G+R K +++ G +
Sbjct: 221 IEFKSEADAEKNLEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSG---ESKTL 274
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
NL + T + L++ F+ + + + G+S+G+ F+ F + ED + AL++ N
Sbjct: 275 VLSNLSYSATEETLQEVFEKATFI----KVPQNPHGKSKGYAFIEFASFEDAKEALNSCN 330
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 352 ARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEED 408
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 409 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 435
>gi|116311029|emb|CAH67960.1| OSIGBa0142I02-OSIGBa0101B20.3 [Oryza sativa Indica Group]
Length = 291
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV N+P+S + + ++FA+ G V E++ + +GF FVTM + EEA A+
Sbjct: 81 KLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIK-GKDGKKKGFAFVTMATAEEAAAAVEK 139
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ + GRT++V F + R G + HK+Y NL W + ++
Sbjct: 140 LNSLDVMGRTIRVEFSKSFRK--------PAPPPPPGTILERHKLYVSNLPWKARAPNMK 191
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F + LSAKV+F+ +G+S G+GFV+F T E+ ++AL ++G
Sbjct: 192 EFFS-KFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDG 236
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +LYV NLP+ + ++ E F++ + SA++V+D + +S G+GFV+ G+ EEA+ A
Sbjct: 172 ERHKLYVSNLPWKARAPNMKEFFSKFNPL-SAKVVFDSPSGKSAGYGFVSFGTKEEAEAA 230
Query: 171 IRLFDGSQIGGRTVKVNF 188
+ DG ++ GR V++ +
Sbjct: 231 LTELDGKELMGRPVRLRW 248
>gi|195469914|ref|XP_002099881.1| GE16738 [Drosophila yakuba]
gi|194187405|gb|EDX00989.1| GE16738 [Drosophila yakuba]
Length = 339
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +Y G L ++ + L E+F +AG V + + DRVT +G+GFV S E
Sbjct: 6 IAERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ ++VN +++Q +D I+ GNL
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN----------------KASAHQKNLDVGANIFIGNLDV 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG+S+ F F+ F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNG 164
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A+D MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGML 162
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + + G+SRGFGFV+FE ED Q A+D MNG
Sbjct: 210 WFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNG 253
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E F + G S +++ D +SRGFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD-HGKSRGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G + G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F G++ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRGFGFV + E A++AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQQAISTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R ER A +L+ F + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRR--EREA---ELRARAMEFTN----IYVKNLQVDMDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LLS KV+ + G SRGFGFV FE E+ Q A+ MNG
Sbjct: 210 LFSQFGKLLSVKVMKDN-NGHSRGFGFVNFEKHEEAQKAVMDMNG 253
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 91/188 (48%), Gaps = 14/188 (7%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
E E A + E +YV NL M L ++F++ G + S +++ D SRGFGFV
Sbjct: 178 EREAELRARAMEFTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDN-NGHSRGFGFV 236
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVD 213
EEA++A+ +G ++ GR + V + V R E +++ N YQG
Sbjct: 237 NFEKHEEAQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQDRLNRYQGV-- 294
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
+Y NL + + LR F + SAKV+ E G S+GFGFV F + E+ A
Sbjct: 295 ---NLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 274 LDAMNGVV 281
+ MNG +
Sbjct: 350 VTEMNGRI 357
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F AG + S + D T RS + ++ +A+ A+
Sbjct: 11 ASLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + + SRGFGFV FET E Q A+ MNG++
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAISTMNGML 162
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL S+ L + F+ G + SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G IG + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIIGTKPLYVALAQ--RKEERRAI---LSNQY 382
>gi|194762578|ref|XP_001963411.1| GF20385 [Drosophila ananassae]
gi|190629070|gb|EDV44487.1| GF20385 [Drosophila ananassae]
Length = 341
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +Y G L ++ + L E+F +AG V + + DRVT +G+GFV S E
Sbjct: 6 IAERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ ++VN +++Q +D I+ GNL
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN----------------KASAHQKNLDVGANIFIGNLDV 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG+S+ F F+ F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNG 164
>gi|118487563|gb|ABK95608.1| unknown [Populus trichocarpa]
Length = 133
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 53/82 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G LP+S +L + F+ G V A ++ DR T RSRGFGFV SVE A EA+
Sbjct: 35 SSKLFIGGLPWSTDDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEAL 94
Query: 172 RLFDGSQIGGRTVKVNFPEVPR 193
DG +GGRTV+V+F E R
Sbjct: 95 SAMDGQNLGGRTVRVSFAEERR 116
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%)
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
S K++ G L W Q L+DAF G + A+VI +R TGRSRGFGFV +++ E+ A
Sbjct: 34 SSSKLFIGGLPWSTDDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEA 93
Query: 274 LDAMNG 279
L AM+G
Sbjct: 94 LSAMDG 99
>gi|224060337|ref|XP_002300149.1| predicted protein [Populus trichocarpa]
gi|222847407|gb|EEE84954.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 53/82 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G LP+S +L + F+ G V A ++ DR T RSRGFGFV SVE A EA+
Sbjct: 35 SSKLFIGGLPWSADDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEAL 94
Query: 172 RLFDGSQIGGRTVKVNFPEVPR 193
DG +GGRTV+V+F E R
Sbjct: 95 SAMDGQNLGGRTVRVSFAEERR 116
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%)
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
S K++ G L W Q L+DAF G + A+VI +R TGRSRGFGFV +++ E+ A
Sbjct: 34 SSSKLFIGGLPWSADDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEA 93
Query: 274 LDAMNG 279
L AM+G
Sbjct: 94 LSAMDG 99
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D T +SRGFGFV+ E+
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMD-PTGKSRGFGFVSYEKHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA--------MGPKLQNSYQGFVDSPHKI 218
A +A+ +G+++ G+TV V + ER A + + + YQG +
Sbjct: 244 ANKAVEDMNGTELNGKTVFVG--RAQKKNERQAELKRKFEMLKQERISRYQGV-----NL 296
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL + + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MN
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 279 GVV 281
G +
Sbjct: 355 GRI 357
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVVKGKPIRIMW---------SQRDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + S+G+ FV FET + A++ MNG++
Sbjct: 116 YDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGML 162
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 12/166 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + + A AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGAKAKEFTN----VYIKNFGDDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F LS KV+ + TG+SRGFGFV++E ED A++ MNG
Sbjct: 210 LFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDMNGT 254
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G +G + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 382
>gi|326528543|dbj|BAJ93453.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 416
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y + L FA G V S +++ ++++ G+GF+ S E A++
Sbjct: 14 EEVRTLWIGDLQYWADENYLYGCFAHTGEVQSVKLIRNKLSGLPEGYGFIEFISHEAAEK 73
Query: 170 AIRLFDGSQIGGR--TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ G T ++N+ G +R GP H I+ G+L +
Sbjct: 74 VLQAYNGAQMPGTELTFRLNWASFSSGEKRPDAGPD------------HSIFVGDLAPDV 121
Query: 228 TSQGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F+ + AKV+ + TGRS+G+GFV F + A+ MNGV
Sbjct: 122 TDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKTRAMSEMNGV 175
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 21/182 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D T RS+G+GFV E A+
Sbjct: 112 IFVGDLAPDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKTRAMSE 171
Query: 174 FDGSQIGGRTVKVN--FPEVPRG-----GERAAMGP----KLQNSYQGFVDSP---HKIY 219
+G R ++++ P+ G G AM P + + DS I+
Sbjct: 172 MNGVYCSTRPMRISAAIPKKSSGSQLQYGAAKAMYPATAYAIPQAQTVLPDSDLTNTTIF 231
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL +T + LR L+ K+ +G GFV + + + A+ ++G
Sbjct: 232 IGNLDPNVTEEELRQICVQFGELIYVKIPV------GKGCGFVQYASRASAEEAVQRLHG 285
Query: 280 VV 281
V
Sbjct: 286 TV 287
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++GNL ++T L ++ + G E++Y ++ +G GFV S A+EA++
Sbjct: 230 IFIGNLDPNVTEEELRQICVQFG-----ELIYVKIP-VGKGCGFVQYASRASAEEAVQRL 283
Query: 175 DGSQIGGRTVKVNFPEVP--RGGERAAMG----PKLQNSYQGFVDSPH 216
G+ IG + V++++ P + + AA G P ++Y + P+
Sbjct: 284 HGTVIGQQVVRLSWGRSPANKQDQSAAWGQQADPNQWSAYYSYGYDPY 331
>gi|313237737|emb|CBY12875.1| unnamed protein product [Oikopleura dioica]
Length = 307
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 17/171 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
++ A +YVG L +T LAE+F + G V + + DRVT +G+GFV S ++A
Sbjct: 8 NQDATVYVGGLDEKVTEHLLAELFIQVGPVVNCHMPKDRVTQTHQGYGFVEFLSEDDADY 67
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI++ + ++ G+ V+VN +A+ S+Q +D ++ GNL +
Sbjct: 68 AIKILNMIKLFGKPVRVN---------KAS-------SHQKNLDVGANLFIGNLDPEIDE 111
Query: 230 QGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L D F +L + K++ + TG S+GF F+ + + E +AL+AMNG
Sbjct: 112 KLLYDTFSAFGVILQTPKIMRDPDTGNSKGFAFINYSSFEAADAALEAMNG 162
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L++GNL + L + F+ G + + +I+ D T S+GF F+ S E A
Sbjct: 95 DVGANLFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGFAFINYSSFEAAD 154
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRG-GER---------AAMGPKLQNSYQGFVDSPHKI 218
A+ +G + R + ++F G GER AA P N D PH +
Sbjct: 155 AALEAMNGQYLCNRPITISFAFKKDGKGERHGSAAERLLAAQNPMATN------DRPHTM 208
Query: 219 YAGNLG 224
+A +G
Sbjct: 209 FADGVG 214
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T + L ++F + G V S + D + RS G+G+V + ++A A+ +
Sbjct: 33 LYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVL 92
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + R +++ + + P ++ S QG I+ NL + + L D
Sbjct: 93 NFTPLNNRPIRIMY---------SHRDPSIRKSGQG------NIFIKNLDRAIDHKALHD 137
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+S+G+GFV F+ E Q A++ +NG++
Sbjct: 138 TFSTFGNILSCKVATDS-SGQSKGYGFVQFDNEESAQKAIEKLNGML 183
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 14/179 (7%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
+P + S + +++ NL ++ +L + F+ G + S ++ D + +S+G+GFV
Sbjct: 108 HRDPSIRKSGQG-NIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDS-SGQSKGYGFVQ 165
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYA 220
+ E A++AI +G + + V V + E AA K N ++
Sbjct: 166 FDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAADKAKFNN-----------VFV 214
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL T L++ F G+ G +++ V+ G+S+ FGFV FE A+D A++A+NG
Sbjct: 215 KNLSESTTDDELKNTF-GEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNG 272
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 9/178 (5%)
Query: 107 AASDEAA--RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+A+D+A ++V NL S T L F E GT+ SA ++ D +S+ FGFV +
Sbjct: 202 SAADKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVVMRDG-DGKSKCFGFVNFENA 260
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH--KIYAG 221
++A A+ +G + V + + ER + + + S + D +Y
Sbjct: 261 DDAARAVEALNGKNFDDKEWYVG--KAQKKSERENELKQRFEQSMKEAADKYQGANLYVK 318
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL + + L++ F + S KV+ + G SRG GFV F T E+ AL MNG
Sbjct: 319 NLDDSIGDEKLKELFSPFGTITSCKVMRDP-NGLSRGSGFVAFSTPEEASRALLEMNG 375
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
+ +++ E E E + E+ A+D + A LYV NL S+ L E+F+ GT+ S +
Sbjct: 284 KAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCK 343
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
++ D SRG GFV + EEA A+ +G + + + V
Sbjct: 344 VMRDP-NGLSRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTL 387
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 16/171 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A
Sbjct: 49 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 108
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + I GR ++ + + P L+ + G ++ NL + ++
Sbjct: 109 LEELNYTLIKGRPCRIMW---------SQRDPALRKTGHG------NVFIKNLDIAIDNK 153
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 154 ALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETAEAATNAIKHVNGML 203
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A AI+
Sbjct: 141 VFIKNLDIAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETAEAATNAIKHV 199
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ER + +++ ++ +Y N+ ++ R
Sbjct: 200 NGMLLNEKKVYVGH-HIPK-KERQSKFDEMKANFT-------NVYVKNIDPEVSDDEFRT 250
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + +G SRGFGFV F + E +A+DA++
Sbjct: 251 LFENFGQITSASLARDGDSGTSRGFGFVNFSSHEAAAAAVDALH 294
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 35/194 (18%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ ++ +F G + SA + D + SRGFGFV S E A A+
Sbjct: 234 VYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGFGFVNFSSHEAAAAAVDAL 293
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+++ G+ + V R ++ +L+ Y+ ++ K +Y NL +
Sbjct: 294 HETELKGQALFVG-----RAQKKHEREEELRKQYEAARIEKASKYQGVNLYVKNLDDEID 348
Query: 229 SQGLRDAFQGQPGLLSAKVI------------------------FERYTGRSRGFGFVTF 264
+ LR F + SAKV+ ++ G+S+GFGFV F
Sbjct: 349 DERLRQEFSPYGTITSAKVMRDSLDSPKEKDGEESKVGEPEEKATDKKQGKSKGFGFVCF 408
Query: 265 ETAEDLQSALDAMN 278
++ A+ MN
Sbjct: 409 SNPDEASKAVAEMN 422
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 26/125 (20%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE ++ E ++ A+ + LYV NL + L + F+ GT+ SA+++
Sbjct: 309 QKKHEREEELRKQYEAARIEKASKYQGVNLYVKNLDDEIDDERLRQEFSPYGTITSAKVM 368
Query: 146 YD--------------------RVTD----RSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181
D + TD +S+GFGFV + +EA +A+ + + G
Sbjct: 369 RDSLDSPKEKDGEESKVGEPEEKATDKKQGKSKGFGFVCFSNPDEASKAVAEMNQRMVNG 428
Query: 182 RTVKV 186
+ + V
Sbjct: 429 KPLYV 433
>gi|337281472|ref|YP_004620944.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis TTB310]
gi|334732549|gb|AEG94925.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 159
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 54/74 (72%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ S L + F++ G V+SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFSQFGAVSSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDGSQIGGRTVKVN 187
+G +GGR+V VN
Sbjct: 64 MNGQPLGGRSVVVN 77
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + + L AF + SAKV+ ER TGRS+GFGFV + + Q+A++
Sbjct: 3 NKLYVGNLPYSVRDSDLEQAFSQFGAVSSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 276 AMNG 279
MNG
Sbjct: 63 GMNG 66
>gi|260221788|emb|CBA30701.1| Glycine-rich RNA-binding protein GRP1A [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 149
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS L + F++ G+V+SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 10 KLYVGNLPYSFRDEDLQQAFSQHGSVSSAKVMMERDTGRSKGFGFVEMGSDAEAQTAISA 69
Query: 174 FDGSQIGGRTVKVN 187
+G Q GGR + VN
Sbjct: 70 MNGQQFGGRGLVVN 83
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + + L+ AF + SAKV+ ER TGRS+GFGFV + + Q+A+
Sbjct: 9 NKLYVGNLPYSFRDEDLQQAFSQHGSVSSAKVMMERDTGRSKGFGFVEMGSDAEAQTAIS 68
Query: 276 AMNG 279
AMNG
Sbjct: 69 AMNG 72
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G VAS + D VT RS G+ +V + + ++A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 118 EELNYTIIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDVAIDNKA 162
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + TG S+G+GFV +ET E A+ +NG++
Sbjct: 163 LHDTFAAFGNILSCKVAQDE-TGASKGYGFVHYETDEAASQAIKHVNGML 211
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D T S+G+GFV + E A +AI+
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-TGASKGYGFVHYETDEAASQAIKHV 207
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K + F + +Y N+ +T R
Sbjct: 208 NGMLLNEKKVYVGH-HIPKKDRQS----KFEEMKANFTN----VYVKNIAADVTEDDFRQ 258
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T E A+D +N
Sbjct: 259 LFE-KYGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDELN 301
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T ++F + G V S+ + D+ +SRGFGFV + E A +A+
Sbjct: 242 VYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQ-EGKSRGFGFVNFTTHESASKAVDEL 300
Query: 175 DGSQIGGRTVKV 186
+ G+ + V
Sbjct: 301 NNKDFHGQDLYV 312
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V + + ++A+
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 122
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 123 EELNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDVAIDNKA 167
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + G S+G+GFV +ET E A+ +NG++
Sbjct: 168 LHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGML 216
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A +AI+
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHV 212
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K + F + IY N+ +T RD
Sbjct: 213 NGMLLNEKKVYVGH-HIPKKDRQS----KFEEMKANFTN----IYIKNISGEVTDDEFRD 263
Query: 235 AFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F P G +++ + G+SRGFGFV F T E A+D +NG
Sbjct: 264 LFT--PFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNG 307
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 67/223 (30%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ +T ++F G V S+ + D+ +SRGFGFV + E A +A+
Sbjct: 247 IYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQ-EGKSRGFGFVNFTTHEAAAKAVDDL 305
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+G G+ + V E+ + E A M + N YQG +Y NL
Sbjct: 306 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARM--EKANKYQGV-----NLYIKNLDDD 358
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYT--------------------------------- 253
+ + LR F + SAKV+ + T
Sbjct: 359 VDDEKLRQLFADFGPITSAKVMRDNATDSGNEDEGSSEEKETEAKKDEEEEEKPEEAKTD 418
Query: 254 ------------------GRSRGFGFVTFETAEDLQSALDAMN 278
G+S+GFGFV F +D A+ MN
Sbjct: 419 DKEDADKKSDKKSDKKLHGKSKGFGFVCFSNPDDATKAVAEMN 461
>gi|380483681|emb|CCF40465.1| cutinase negative acting protein [Colletotrichum higginsianum]
Length = 401
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 10/204 (4%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAA-------SDEAARLYVGNLPYSMTSSSLAEVFAEAGT 138
ETE + EE + + +EP + SD+++ L+VG+L +++ +SL E F E
Sbjct: 174 ETEAKVEEPSKKRKALDEPVIPGKKARTDISDKSSTLFVGSLAWAVDDNSLYEAFQEFSD 233
Query: 139 VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERA 198
+ A +V D+ T RSRGFG+V + E A A+ G ++ GR + ++F GE
Sbjct: 234 LTGARVVTDKATGRSRGFGYVDFATPEAAAAALEGSQGRELAGRAMNIDFSGQKPAGEGN 293
Query: 199 AMGPKLQNSYQ-GFVDSPHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 255
+ + G SP ++ GNL + + +R F + S ++ + +G
Sbjct: 294 PQARAFDRAQKHGDTVSPESDTLFVGNLPFDVDQDTVRAFFSEAAEVTSVRLPTDPESGN 353
Query: 256 SRGFGFVTFETAEDLQSALDAMNG 279
+GFG+V+F + +D ++A +NG
Sbjct: 354 LKGFGYVSFNSIDDAKTAFAQLNG 377
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGNLP+ + ++ F+EA V S + D + +GFG+V+ S+++AK
Sbjct: 310 SPESDTLFVGNLPFDVDQDTVRAFFSEAAEVTSVRLPTDPESGNLKGFGYVSFNSIDDAK 369
Query: 169 EAIRLFDGSQI 179
A +G +
Sbjct: 370 TAFAQLNGQYV 380
>gi|422295750|gb|EKU23049.1| hypothetical protein NGA_0682100 [Nannochloropsis gaditana CCMP526]
Length = 227
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 25/169 (14%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL + T+ SL + AG V E+ T RS+G+ VT + E+A A+ L
Sbjct: 5 VFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELL 64
Query: 175 DGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
G ++ GR V+ + E+ + +GFV ++ GNL W +T+ GL
Sbjct: 65 CGREVEGRPLYVREDRTEIEK--------------EEGFV-----VFVGNLPWDMTASGL 105
Query: 233 RDAF-QGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
R F + P + K +GRSRGFG + F ++E+ Q A++ M+G+
Sbjct: 106 RTVFSEFSPYDVHIKT---NMSGRSRGFGLLRFRSSEEAQRAIEQMHGI 151
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 13/152 (8%)
Query: 75 FQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFA 134
F+ ED+ E E E + E+ +E ++VGNLP+ MT+S L VF+
Sbjct: 51 FETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFS 110
Query: 135 EAGTVASAEI-VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193
E + ++ + ++ RSRGFG + S EEA+ AI G + R + V
Sbjct: 111 E---FSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRL----- 162
Query: 194 GGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+RA + ++ +++ + GN+ W
Sbjct: 163 --DRAHL--EMMGHSPATMEASDTVTCGNIPW 190
>gi|194896158|ref|XP_001978424.1| GG19577 [Drosophila erecta]
gi|190650073|gb|EDV47351.1| GG19577 [Drosophila erecta]
Length = 339
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +Y G L ++ + L E+F +AG V + + DRVT +G+GFV S E
Sbjct: 6 IAERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ ++VN +++Q +D I+ GNL
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN----------------KASAHQKNLDVGANIFIGNLDV 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG+S+ F F+ F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNG 164
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D T +SRGFGFV+ E+
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMD-PTGKSRGFGFVSYEKHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA--------MGPKLQNSYQGFVDSPHKI 218
A +A+ +G+++ G+TV V + ER A + + + YQG +
Sbjct: 244 ANKAVEDMNGTELNGKTVFVG--RAQKKNERQAELKRKFEMLKQERISRYQGV-----NL 296
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL + + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MN
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 279 GVV 281
G +
Sbjct: 355 GRI 357
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVVKGKPIRIMW---------SQRDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + S+G+ FV FET + A++ MNG++
Sbjct: 116 YDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGML 162
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 12/166 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + + A AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGAKAKEFTN----VYIKNFGDDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F LS KV+ + TG+SRGFGFV++E ED A++ MNG
Sbjct: 210 LFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDMNGT 254
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E + E + + E +++E + + LY+ NL ++ L + F+ G++
Sbjct: 266 AQKKNERQAELKRKFEMLKQERISRY----QGVNLYIKNLDDTIDDEKLRKEFSPFGSIT 321
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
SA+++ + RS+GFGFV S EEA +A+ +G +G + + V + R ER A
Sbjct: 322 SAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ--RKEERKA- 376
Query: 201 GPKLQNSY 208
L N Y
Sbjct: 377 --HLTNQY 382
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
AA+ + LYVG+L +T + L EVF G V S + D VT RS G+ +V +++
Sbjct: 78 AANFVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQD 137
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ ++ + + I G+ ++ + P L+ S G I+ NL
Sbjct: 138 AERSLDTLNYTVIKGQPCRIMW---------CHRDPSLRKSGNG------NIFVKNLDKN 182
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV + G S+G+GFV +E E +SA+D +NG++
Sbjct: 183 IDNKALYDTFSLFGNILSCKVAVDE-NGHSKGYGFVHYENEESARSAIDKVNGML 236
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 15/165 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL ++ + +L + F+ G + S ++ D S+G+GFV + E A+ AI
Sbjct: 174 IFVKNLDKNIDNKALYDTFSLFGNILSCKVAVDE-NGHSKGYGFVHYENEESARSAIDKV 232
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G IGG+TV V P + R K N Y + S W ++ LR+
Sbjct: 233 NGMLIGGKTVYVG-PFIRRAERDNLAETKYTNVYIKNMPS---------AWEDEAR-LRE 281
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + G +++ V+ R + R F F F + ++A++A+NG
Sbjct: 282 TF-AKYGSITSLVV--RKDPKGRLFAFCNFADHDSAKAAVEALNG 323
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LY+ N+ S+ L ++F G++ SA+++ D SR FGFV S EEA +A
Sbjct: 387 QGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDE-RGVSRCFGFVCFMSPEEATKA 445
Query: 171 IRLFDGSQIGGRTVKVNFPE 190
+ + G+ + V E
Sbjct: 446 VTEMHLKLVKGKPLYVGLAE 465
>gi|298528161|ref|ZP_07015565.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511813|gb|EFI35715.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 84
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLP+S T + L ++FAE G V+SA+I+ DR T RSRGFGFV M + A EAI
Sbjct: 4 LYVGNLPWSTTEAQLRDLFAEYGEVSSAKIIEDRETGRSRGFGFVEMEN--GADEAIESL 61
Query: 175 DGSQIGGRTVKVNFPEVPR 193
+G+ GGR +KVN + R
Sbjct: 62 NGTDFGGRNIKVNVAKPKR 80
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y GNL W T LRD F + SAK+I +R TGRSRGFGFV E D A++++
Sbjct: 4 LYVGNLPWSTTEAQLRDLFAEYGEVSSAKIIEDRETGRSRGFGFVEMENGAD--EAIESL 61
Query: 278 NGV 280
NG
Sbjct: 62 NGT 64
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 22/176 (12%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NLP T ++L ++F++ G + S I+ D+S+GFGFV VE+A+ A+
Sbjct: 226 VFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNAL 285
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ-----------NSYQGFVDSPHKIYAGNL 223
+G+++ G+T+ V R ++A +L+ N YQG +Y NL
Sbjct: 286 NGTELAGKTL-----FVARAQKKAEREAELKQRYDALRLERINKYQGI-----NLYVKNL 335
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ +R F + S K++ + G+SRGFGF+ F +AE+ A+ MNG
Sbjct: 336 DDAIDEDKIRTEFAPFGTITSVKIMRDE-KGKSRGFGFICFSSAEEATKAVTEMNG 390
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 17/167 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +T + L E+F G V S + D +T RS G+ +V + +A+ A+
Sbjct: 47 LYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAERALDTL 106
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ S I G+ ++ + + ++ +G ++ NL + ++ L D
Sbjct: 107 NYSLIRGKPCRIMWSQRDPAVRKSGLG---------------NVFIKNLDKTIDNKALLD 151
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV+ + S+G+GFV +ET E ++A+ +NG+V
Sbjct: 152 TFSAFGNILSCKVVTDE--NGSKGYGFVHYETQEAAETAIAKVNGMV 196
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 135 VFIKNLDKTIDNKALLDTFSAFGNILSCKVVTDE--NGSKGYGFVHYETQEAAETAIAKV 192
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G I G+ V V VPR ER +G + FV NL T L D
Sbjct: 193 NGMVINGKQVFVGI-FVPR-KERVELGEGVTKFTNVFVK--------NLPEDTTDAALND 242
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + S ++ +S+GFGFV +E ED Q+A++A+NG
Sbjct: 243 MFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNALNG 287
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E E E ++ +A+ E K + LYV NL ++ + FA GT+
Sbjct: 300 AQKKAEREAELKQRYDALRLERINKY----QGINLYVKNLDDAIDEDKIRTEFAPFGTIT 355
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181
S +I+ D +SRGFGF+ S EEA +A+ +G I G
Sbjct: 356 SVKIMRDE-KGKSRGFGFICFSSAEEATKAVTEMNGQTIQG 395
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG++ S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV +++ SRGFGFV FET E Q A++ MNG++
Sbjct: 116 YDTFSTFGNILSCKVACDKHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++ D+ SRGFGFV + E A++AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDK--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R ERAA +L F + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRR--ERAA---ELGARALEFTN----IYVKNLPADVDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ + +GRSR FGFV FE E+ Q A+ MNG
Sbjct: 210 LFSQFGKMLSVKVMRDN-SGRSRCFGFVNFEKHEEAQKAVVHMNG 253
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 14/177 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +YV NLP + L ++F++ G + S +++ D + RSR FGFV EEA++A
Sbjct: 189 EFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDN-SGRSRCFGFVNFEKHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLG 224
+ +G ++ GR + + + V R E +++ + YQG +Y NL
Sbjct: 248 VVHMNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGV-----NLYVKNLD 302
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ LR F + SAKV+ E S+GFGFV F + E+ A+ MNG +
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMTE--GSHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL S+ L + F+ G + SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GSHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G +G + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIVGTKPLYVALAQ--RKEERKAI---LTNQY 382
>gi|308081546|ref|NP_001183096.1| uncharacterized protein LOC100501457 [Zea mays]
gi|238009292|gb|ACR35681.1| unknown [Zea mays]
gi|414871228|tpg|DAA49785.1| TPA: hypothetical protein ZEAMMB73_160597 [Zea mays]
Length = 359
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 93/174 (53%), Gaps = 19/174 (10%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A ++ A YVGNL ++ L E+F +AG V + + DRVT+ +G+GFV S E+
Sbjct: 19 AERNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A AI++ + ++ G+ ++VN +A+ K +D ++ GNL
Sbjct: 79 ADYAIKILNMIKLYGKPIRVN---------KASQDKK-------SLDVGANLFIGNLDPD 122
Query: 227 LTSQGLRDAFQGQPGLL--SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + L D F G++ + K++ + TG SRGFGFV++E+ E A++AMN
Sbjct: 123 VDEKLLYDTFSAF-GVIVTNPKIMRDPETGNSRGFGFVSYESFESSDQAIEAMN 175
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L++GNL + L + F+ G V + +I+ D T SRGFGFV+ S E +
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYESFESSD 168
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
+AI + + R + V++
Sbjct: 169 QAIEAMNNQHLCNRPITVSY 188
>gi|312375219|gb|EFR22634.1| hypothetical protein AND_14423 [Anopheles darlingi]
Length = 413
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +YVG L T + L E+F ++G V + + DRVT +G+GFV E
Sbjct: 6 IAERNQDATIYVGGLDDKATETLLWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFLGEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ ++VN +++Q +D I+ GNL
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN----------------KASAHQKSLDVGANIFIGNLDL 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG S+GF F+ F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFINFASFEASDAAMDAMNG 164
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A +++GNL + L + F+ G + + +I+ D T S+GF F+ S E +
Sbjct: 97 DVGANIFIGNLDLEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFINFASFEASD 156
Query: 169 EAIRLFDGSQIGGRTVKVN--FPEVPRGGERAAMGPKL---QNSYQGFVDSPHKIYA 220
A+ +G + R + V+ F + +G + +L QN D PH+++A
Sbjct: 157 AAMDAMNGQYLCNRPISVSYAFKKDSKGERHGSAAERLLAAQNPLS-HADRPHQLFA 212
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T S L + F++ G V S + D T RS G+G+V S ++A AI+
Sbjct: 42 LYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQEL 101
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + G+ V+V + + P ++ S G I+ NL + + L D
Sbjct: 102 NYIPLNGKPVRVMY---------SHRDPSVRRSGAG------NIFIKNLDKSIDHKALHD 146
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F ++S KV + +G+S+G+GFV +ET E Q A+ +NG++
Sbjct: 147 TFSVFGNIISCKVAVDS-SGQSKGYGFVQYETEESAQKAMGQLNGML 192
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 13/168 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL S+ +L + F+ G + S ++ D + +S+G+GFV + E A++A+
Sbjct: 127 AGNIFIKNLDKSIDHKALHDTFSVFGNIISCKVAVDS-SGQSKGYGFVQYETEESAQKAM 185
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + + V V R ER + G K + +Y NL T
Sbjct: 186 GQLNGMLLNDKQVYVG--PFLRRQERDSTGNKTIFT---------NVYVKNLAESTTDDD 234
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++ F G+ G +++ V+ + G+ +GFGFV FE A+D A++++NG
Sbjct: 235 LKNIF-GEFGKITSAVVMKDGEGKPKGFGFVNFENADDAAKAVESLNG 281
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL S T L +F E G + SA ++ D + +GFGFV + ++A +A+
Sbjct: 221 VYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDG-EGKPKGFGFVNFENADDAAKAVESL 279
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPHK-----IYAGNLGWGLT 228
+G + V R +++ +L+ Y Q ++ K +Y NL ++
Sbjct: 280 NGKTFDDKEWFVG-----RAQKKSEREMELKVQYEQSLKEAADKFQSSNLYVKNLDDSVS 334
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L++ F + S KV+ + G SRG GFV F T E+ A+ M+G
Sbjct: 335 DEKLKELFTPYGTVTSCKVMRDP-NGMSRGSGFVAFSTPEEATKAMSEMSG 384
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASD-EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
++ E E E V+ E+ K AA +++ LYV NL S++ L E+F GTV S +++
Sbjct: 296 KKSEREMELKVQYEQSLKEAADKFQSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMR 355
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D SRG GFV + EEA +A+ G I + + V
Sbjct: 356 D-PNGMSRGSGFVAFSTPEEATKAMSEMSGKMIENKPLYV 394
>gi|170057743|ref|XP_001864617.1| splicing factor 3B subunit 4 [Culex quinquefasciatus]
gi|167877079|gb|EDS40462.1| splicing factor 3B subunit 4 [Culex quinquefasciatus]
Length = 360
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +YVG L ++ + L E+F +AG V + + DRVT +G+GFV E
Sbjct: 6 IAERNQDATIYVGGLDDKVSETLLWEMFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLGEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ ++VN +A+ ++Q +D I+ GNL
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN---------KAS-------AHQKNLDVGANIFIGNLDP 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG S+GF F+ F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFINFASFEASDAAMDAMNG 164
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A +++GNL + L + F+ G + + +I+ D T S+GF F+ S E +
Sbjct: 97 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFINFASFEASD 156
Query: 169 EAIRLFDGSQIGGRTVKVN--FPEVPRGGERAAMGPKL---QNSYQGFVDSPHKIYA 220
A+ +G + R + V+ F + +G + +L QN D PH+++A
Sbjct: 157 AAMDAMNGQYLCNRPISVSYAFKKDSKGERHGSAAERLLAAQNPLS-HADRPHQLFA 212
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 16/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + +
Sbjct: 46 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ A+ + + I G+ ++ + + P L+ + QG ++ NL
Sbjct: 106 GERALEDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIKNLDAA 150
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 151 IDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGML 204
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 200
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + +Y N+ +T + R
Sbjct: 201 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----VYIKNIDQEVTDEEFRK 251
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T + Q+A+D MN
Sbjct: 252 MFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMN 294
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 60/216 (27%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ +T ++F + G + SA + D+ +SRGFGFV + + A+ A+
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ +I G+ + V E+ + E A + + + YQG +Y NL
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARL--EKASKYQGV-----NLYVKNLTDD 346
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYT--------------------------------- 253
+ + LR+ F + SAKV+ + T
Sbjct: 347 VDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESE 406
Query: 254 -----------GRSRGFGFVTFETAEDLQSALDAMN 278
G+S+GFGFV F + ++ A+ MN
Sbjct: 407 EEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMN 442
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 46/145 (31%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE ++ E ++ A+ + LYV NL + L E+F+ GT+ SA+++
Sbjct: 309 QKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVM 368
Query: 146 YDRVT--------------------------------------------DRSRGFGFVTM 161
D VT +S+GFGFV
Sbjct: 369 RDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCF 428
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKV 186
S +EA +A+ + + G+ + V
Sbjct: 429 SSPDEASKAVTEMNQRMVNGKPLYV 453
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F++ G S ++ D +S+GFGFV+ E+
Sbjct: 185 ARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDD-GGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERA--------AMGPKLQNSYQGFVDSPHKI 218
A++A+ +G ++ GR V V + GER M YQG +
Sbjct: 244 AQKAVDDMNGKELNGRQVYVG--RAQKKGERQNELKRKFEQMKQDRMTRYQGV-----NL 296
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL GL + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MN
Sbjct: 297 YVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 279 GVV 281
G +
Sbjct: 355 GRI 357
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I GR +++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGRPLRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGML 162
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAREFTN----VYIKNFGEDMDDEKLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS +V+ + G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFSKYGPALSIRVMTDD-GGKSKGFGFVSFERHEDAQKAVDDMNG 253
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG L S+T + L EVF G VAS + D VT RS G+ +V + + + A+
Sbjct: 49 LYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQL 108
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ S I R ++ + + P L+ + QG I+ NL + ++ L D
Sbjct: 109 NYSLIKNRACRIMW---------SQRDPALRKTGQG------NIFIKNLDEQIDNKALHD 153
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + + G S+G+GFV +ETAE ++A+ ++NG++
Sbjct: 154 TFAAFGNVLSCKVATDEH-GNSKGYGFVHYETAEAAENAIKSVNGML 199
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + + +L + FA G V S ++ D + S+G+GFV + E A+ AI+
Sbjct: 137 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGN-SKGYGFVHYETAEAAENAIKSV 195
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +PR ER + +++ Y IY NL L +G +
Sbjct: 196 NGMLLNDKKVFVGH-HIPRK-ERQSKIDEMKAQYT-------NIYVKNLDPELGQEGFEE 246
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F G+ G +++ + + G+SRGFGFV FE+ E +A++ ++
Sbjct: 247 LF-GKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVETLH 289
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL + E+F + G + SA + D +SRGFGFV S E+A A+
Sbjct: 230 IYVKNLDPELGQEGFEELFGKFGNITSAALSKDE-EGKSRGFGFVNFESHEQAAAAVETL 288
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
++I GR + V R +++ +L+ SY+ Y G NL +
Sbjct: 289 HDTEINGRKLY-----VARAQKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDID 343
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ LR F+ + S KV+ + S+GFGFV F + ++ A+ MN
Sbjct: 344 DEKLRAEFEPFGTITSCKVMRDE-KNTSKGFGFVCFSSPDEATKAVSEMN 392
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E E E + E ++E+ K + LY+ NL + L F GT+
Sbjct: 303 AQKKSEREDELRKSYENAKQEKLSKY----QGVNLYIKNLEDDIDDEKLRAEFEPFGTIT 358
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
S +++ D + S+GFGFV S +EA +A+ + IG + + V+
Sbjct: 359 SCKVMRDE-KNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVSL 405
>gi|313240198|emb|CBY32547.1| unnamed protein product [Oikopleura dioica]
Length = 307
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 17/171 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
++ A +YVG L +T LAE+F + G V + + DRVT +G+GFV S ++A
Sbjct: 8 NQDATVYVGGLDEKVTEHLLAELFIQVGPVVNCHMPKDRVTQTHQGYGFVEFLSEDDADY 67
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI++ + ++ G+ V+VN +A+ S+Q +D ++ GNL +
Sbjct: 68 AIKILNMIKLFGKPVRVN---------KAS-------SHQKNLDVGANLFIGNLDPEIDE 111
Query: 230 QGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L D F +L + K++ + TG S+GF F+ + + E +AL+AMNG
Sbjct: 112 KLLYDTFSAFGVILQTPKIMRDPDTGNSKGFAFINYSSFEAADAALEAMNG 162
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L++GNL + L + F+ G + + +I+ D T S+GF F+ S E A
Sbjct: 95 DVGANLFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGFAFINYSSFEAAD 154
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRG-GER---------AAMGPKLQNSYQGFVDSPHKI 218
A+ +G + R + ++F G GER AA P N D PH +
Sbjct: 155 AALEAMNGQYLCNRPITISFAFKKDGKGERHGSAAERLLAAQNPMATN------DRPHTM 208
Query: 219 YAGNLG 224
+A +G
Sbjct: 209 FADGVG 214
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRGFGFV + E A++AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETYEAAQQAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R ERAA +L F + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRR--ERAA---ELGARALEFTN----IYVKNLPADVDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ + +GRSR FGFV FE E+ Q A+ MNG
Sbjct: 210 LFSQFGKMLSVKVMRDS-SGRSRCFGFVNFEKHEEAQKAVVHMNG 253
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG++ S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + + SRGFGFV FET E Q A++ MNG++
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETYEAAQQAINTMNGML 162
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 14/177 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +YV NLP + L ++F++ G + S +++ D + RSR FGFV EEA++A
Sbjct: 189 EFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDS-SGRSRCFGFVNFEKHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLG 224
+ +G ++ GR + + + V R E +++ + YQG +Y NL
Sbjct: 248 VVHMNGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQDRLSRYQGV-----NLYVKNLD 302
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ LR F + SAKV+ E S+GFGFV F + E+ A+ MNG +
Sbjct: 303 DSIDDGKLRKEFSPYGVITSAKVMTE--GSHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL S+ L + F+ G + SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDSIDDGKLRKEFSPYGVITSAKVMTE--GSHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G +G + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIVGTKPLYVALAQ--RKEERKAI---LTNQY 382
>gi|350296577|gb|EGZ77554.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 356
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 90/173 (52%), Gaps = 3/173 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
+D+ + L+VGNL + + + L F + SA +V DR + RSRGFG+V + E+A+
Sbjct: 104 ADDKSTLWVGNLGWGIDDAILLAEFEDCEGAKSARVVTDRESGRSRGFGYVDFATNEQAQ 163
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK--IYAGNLGWG 226
+A G+ + GR ++++F G + + + G SP ++ GN+ +
Sbjct: 164 KAYDAKSGALLEGREMRLDFA-AKDAGNKPQDKAANRAAKHGDTISPESDTLFVGNMPFS 222
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ D F + S ++ ++ +GR +GF +VTF + ED ++A + +NG
Sbjct: 223 ADESVVSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSVEDAKNAFEQLNG 275
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGN+P+S S +++ F +VAS I D+ + R +GF +VT SVE+AK
Sbjct: 208 SPESDTLFVGNMPFSADESVVSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSVEDAK 267
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
A +GS + GR V++++ + PR
Sbjct: 268 NAFEQLNGSDLNGRPVRLDYAK-PR 291
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
D ++ GNLGWG+ L F+ G SA+V+ +R +GRSRGFG+V F T E Q
Sbjct: 104 ADDKSTLWVGNLGWGIDDAILLAEFEDCEGAKSARVVTDRESGRSRGFGYVDFATNEQAQ 163
Query: 272 SALDAMNGVV 281
A DA +G +
Sbjct: 164 KAYDAKSGAL 173
>gi|336464486|gb|EGO52726.1| hypothetical protein NEUTE1DRAFT_91358 [Neurospora tetrasperma FGSC
2508]
Length = 356
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 90/173 (52%), Gaps = 3/173 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
+D+ + L+VGNL + + + L F + SA +V DR + RSRGFG+V + E+A+
Sbjct: 104 ADDKSTLWVGNLGWGIDDAILLAEFEDCEGAKSARVVTDRESGRSRGFGYVDFATNEQAQ 163
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK--IYAGNLGWG 226
+A G+ + GR ++++F G + + + G SP ++ GN+ +
Sbjct: 164 KAYDAKSGALLEGREMRLDFA-AKDAGNKPQDKAANRAAKHGDTISPESDTLFVGNMPFS 222
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ D F + S ++ ++ +GR +GF +VTF + ED ++A + +NG
Sbjct: 223 ADESVVSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSVEDAKNAFEQLNG 275
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGN+P+S S +++ F +VAS I D+ + R +GF +VT SVE+AK
Sbjct: 208 SPESDTLFVGNMPFSADESVVSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSVEDAK 267
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPR 193
A +GS + GR V++++ + PR
Sbjct: 268 NAFEQLNGSDLNGRPVRLDYAK-PR 291
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
D ++ GNLGWG+ L F+ G SA+V+ +R +GRSRGFG+V F T E Q
Sbjct: 104 ADDKSTLWVGNLGWGIDDAILLAEFEDCEGAKSARVVTDRESGRSRGFGYVDFATNEQAQ 163
Query: 272 SALDAMNGVV 281
A DA +G +
Sbjct: 164 KAYDAKSGAL 173
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 16/195 (8%)
Query: 87 TEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
TE E+ + A + A +A LYVG L S+T + L E+F++ G+VAS +
Sbjct: 36 TEATSEDPDTAGPTPTGAQAAHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCR 95
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN 206
D VT RS G+ +V + + ++A+ + + I GR ++ + + P L+
Sbjct: 96 DAVTRRSLGYAYVNYNTTIDGEKALEELNYTLIKGRPCRIMW---------SQRDPALRK 146
Query: 207 SYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266
+ QG ++ NL + ++ L D F +LS KV + +G S+G+GFV +ET
Sbjct: 147 TGQG------NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-SGNSKGYGFVHYET 199
Query: 267 AEDLQSALDAMNGVV 281
E A+ +NG++
Sbjct: 200 DEAASQAIKHVNGML 214
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A +AI+
Sbjct: 152 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-SGNSKGYGFVHYETDEAASQAIKHV 210
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K + F + IY N+ T R+
Sbjct: 211 NGMLLNEKKVFVGH-HIPKKDRQS----KFEEMKANFTN----IYVKNIPADATDDQFRE 261
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F+ + SA + + G++RGFGFV F E +A+D +NG
Sbjct: 262 LFEKFGDVTSASLARDE-AGKNRGFGFVNFINHEHASAAVDELNG 305
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+P T E+F + G V SA + D ++RGFGFV + E A A+
Sbjct: 245 IYVKNIPADATDDQFRELFEKFGDVTSASLARDEA-GKNRGFGFVNFINHEHASAAVDEL 303
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+G G+ + V R ++ +L+ SY+ ++ K +Y NL +
Sbjct: 304 NGKDFMGQDLYVG-----RAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLEDDVD 358
Query: 229 SQGLRDAFQGQPGLLSAKVI 248
+ LR+ F + SAKV+
Sbjct: 359 DEKLRELFAPYGAITSAKVM 378
>gi|337281471|ref|YP_004620943.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis TTB310]
gi|334732548|gb|AEG94924.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 128
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS S + + F++ GTV+SA+++ +R T RS+GFGFV M S EA+ AI
Sbjct: 4 KLYVGNLPYSYRDSDMEQAFSQFGTVSSAKVMMERDTGRSKGFGFVEMSSPAEAQAAIEG 63
Query: 174 FDGSQIGGRTVKVN--FPEVPR 193
+G QIGGR + VN P PR
Sbjct: 64 MNGQQIGGRGLVVNEARPMEPR 85
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + + AF + SAKV+ ER TGRS+GFGFV + + Q+A++
Sbjct: 3 NKLYVGNLPYSYRDSDMEQAFSQFGTVSSAKVMMERDTGRSKGFGFVEMSSPAEAQAAIE 62
Query: 276 AMNG 279
MNG
Sbjct: 63 GMNG 66
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T + L ++F + G V S + D + RS G+G+V + ++A A+ +
Sbjct: 30 LYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVL 89
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + R +++ + + P ++ S QG I+ NL + + L D
Sbjct: 90 NFTPLNNRPIRIMY---------SHRDPSIRKSGQG------NIFIKNLDRAIDHKALHD 134
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+S+G+GFV F+ E Q A++ +NG++
Sbjct: 135 TFSTFGNILSCKVATDS-SGQSKGYGFVQFDNEESAQKAIEKLNGML 180
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
+P + S + +++ NL ++ +L + F+ G + S ++ D + +S+G+GFV
Sbjct: 105 HRDPSIRKSGQG-NIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDS-SGQSKGYGFVQ 162
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYA 220
+ E A++AI +G + + V V R ER + K + + ++
Sbjct: 163 FDNEESAQKAIEKLNGMLLNDKQVYVG--PFLRKQERESTADKAKF---------NNVFV 211
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL T L++ F G+ G +++ V+ G+S+ FGFV FE A+D A++A+NG
Sbjct: 212 KNLSESTTDDELKNVF-GEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNG 269
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 7/185 (3%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ ++E A + ++V NL S T L VF E GT+ SA ++ D +S+ FG
Sbjct: 192 LRKQERESTADKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMRDG-DGKSKCFG 250
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGER-AAMGPKLQNSYQGFVDSPH 216
FV + ++A A+ +G + + V + + ER + + + S + D
Sbjct: 251 FVNFENADDAARAVEALNGKKFDDKEWYVG--KAQKKSERENELKQRFEQSMKEAADKYQ 308
Query: 217 --KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+Y NL L L++ F + S KV+ + G SRG GFV F T ++ AL
Sbjct: 309 GANLYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDP-NGISRGSGFVAFSTPDEASRAL 367
Query: 275 DAMNG 279
MNG
Sbjct: 368 LEMNG 372
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
+ +++ E E E + E+ A+D + A LYV NL S+ L E+F+ GT+ S +
Sbjct: 281 KAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCK 340
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
++ D SRG GFV + +EA A+ +G + + + V
Sbjct: 341 VMRDP-NGISRGSGFVAFSTPDEASRALLEMNGKMVVSKPLYVTL 384
>gi|327398778|ref|YP_004339647.1| RNP-1 like RNA-binding protein [Hippea maritima DSM 10411]
gi|327181407|gb|AEA33588.1| RNP-1 like RNA-binding protein [Hippea maritima DSM 10411]
Length = 86
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLPYS T L E+F E G V+S +I+ DR T RSRGFGFV M S ++A++AI
Sbjct: 5 LYVGNLPYSTTEDELKELFGEYGEVSSTKIITDRETGRSRGFGFVEM-SDDDAQKAIDSL 63
Query: 175 DGSQIGGRTVKVN 187
+G GGR +KVN
Sbjct: 64 NGVNFGGRNLKVN 76
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y GNL + T L++ F + S K+I +R TGRSRGFGFV + +D Q A+D++
Sbjct: 5 LYVGNLPYSTTEDELKELFGEYGEVSSTKIITDRETGRSRGFGFVEM-SDDDAQKAIDSL 63
Query: 278 NGV 280
NGV
Sbjct: 64 NGV 66
>gi|395005503|ref|ZP_10389380.1| RRM domain-containing RNA-binding protein, partial [Acidovorax sp.
CF316]
gi|394316556|gb|EJE53277.1| RRM domain-containing RNA-binding protein, partial [Acidovorax sp.
CF316]
Length = 110
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ S L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDPEAQAAING 63
Query: 174 FDGSQIGGRTVKVN 187
+G +GGR++ VN
Sbjct: 64 MNGQPLGGRSIVVN 77
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + + L AF + SAKV+ ER TGRS+GFGFV + + Q+A++
Sbjct: 3 NKLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDPEAQAAIN 62
Query: 276 AMNG 279
MNG
Sbjct: 63 GMNG 66
>gi|344304396|gb|EGW34628.1| hypothetical protein SPAPADRAFT_57674 [Spathaspora passalidarum
NRRL Y-27907]
Length = 414
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 18/179 (10%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
+DE A L+VG L +++ L F G V A ++ +R T +SRG+G+V + + A+
Sbjct: 171 TDEPATLFVGRLSWNIDDEWLKREFEHIGGVIGARVIMERSTGKSRGYGYVDFDNKDSAE 230
Query: 169 EAIRLFDGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVDSP----HKIYA 220
+A+ G +I GR + ++ P + +RA F D+P ++
Sbjct: 231 KALVEMQGKEIDGRPINLDMSTGKPHASKSNDRAKQ----------FGDTPSAPSDTLFI 280
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL + L + F ++S ++ T + +GFG+V F + ++ ++AL+A+NG
Sbjct: 281 GNLSFNAQRDNLFEIFGQHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNG 339
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ +L E+F + GTV S I T + +GFG+V SV+EAK A+
Sbjct: 278 LFIGNLSFNAQRDNLFEIFGQHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 337
Query: 175 DGSQIGGRTVKVNFPEVPRGGERA 198
+G I GR +++F PR A
Sbjct: 338 NGEYIEGRACRLDF-SAPRDNANA 360
>gi|449436976|ref|XP_004136268.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449497014|ref|XP_004160289.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 300
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 28/207 (13%)
Query: 75 FQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFA 134
FQ SQDE + + EE RL N+P+ T + +F
Sbjct: 76 FQFASTSQDEAVSSPSDTEEFSQT---------------RLLAQNVPWDSTPEDIRSLFE 120
Query: 135 EAGTVASAEI-VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193
+ GTV E+ +Y+++ R+RG FVTMGS EEA A+ + + GRT+++N+
Sbjct: 121 KYGTVLDVELSMYNKI--RNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNY----- 173
Query: 194 GGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQ-GQPGLLSAKVIFERY 252
A + + + ++ NL + ++ L++ F G ++SA++IF
Sbjct: 174 ----AKLKKEKPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNEN 229
Query: 253 TGRSRGFGFVTFETAEDLQSALDAMNG 279
RS G+GFV F+T +D ++A+ G
Sbjct: 230 PRRSSGYGFVAFKTKKDAEAAISEFQG 256
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
L+V NLP+ + L E F + +G V SA+I+++ RS G+GFV + ++A+ AI
Sbjct: 194 LFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFVAFKTKKDAEAAISE 253
Query: 174 FDGSQIGGRTVKV 186
F G GR+++V
Sbjct: 254 FQGKTFMGRSLRV 266
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S I D++T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
++ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 SERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|221065733|ref|ZP_03541838.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|264678761|ref|YP_003278668.1| RNA-binding region RNP-1 [Comamonas testosteroni CNB-2]
gi|220710756|gb|EED66124.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|262209274|gb|ACY33372.1| RNA-binding region RNP-1 [Comamonas testosteroni CNB-2]
Length = 113
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ ++YVGNLPYS+T SSL FAE GTV SA+++ DR T RS+GF FV M S +E + AI
Sbjct: 2 STKIYVGNLPYSVTDSSLRSNFAEFGTVTSAKVMMDRETGRSKGFAFVEMTSADECQAAI 61
Query: 172 RLFDGSQIGGRTVKVNFPEVPR 193
G + GR++ VN + PR
Sbjct: 62 SGLHGMSVDGRSIVVNLAK-PR 82
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
KIY GNL + +T LR F + SAKV+ +R TGRS+GF FV +A++ Q+A+
Sbjct: 4 KIYVGNLPYSVTDSSLRSNFAEFGTVTSAKVMMDRETGRSKGFAFVEMTSADECQAAISG 63
Query: 277 MNGV 280
++G+
Sbjct: 64 LHGM 67
>gi|365760560|gb|EHN02272.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 371
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E A ++VG L +S+ L + F G V SA ++ +R TDRSRG+G+V + A+
Sbjct: 137 SGEPATIFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFENKSYAE 196
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLG 224
+AI+ G +I GR + + G + + F D+P + ++ GNL
Sbjct: 197 KAIQEMQGKEIDGRPINCDL------STSKPAGNNTNDRAKKFGDTPSEPSDTLFLGNLS 250
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + + F ++S ++ T + +GFG+V F + ED + AL+++ G
Sbjct: 251 FNADRDTIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSSLEDSKKALESLQG 305
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ ++ E+FA+ G V S I T++ +GFG+V S+E++K+A+
Sbjct: 244 LFLGNLSFNADRDTIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSSLEDSKKALESL 303
Query: 175 DGSQIGGRTVKVNF 188
G I R V++++
Sbjct: 304 QGEYIDNRPVRLDY 317
>gi|222612944|gb|EEE51076.1| hypothetical protein OsJ_31773 [Oryza sativa Japonica Group]
Length = 391
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 19/174 (10%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A ++ A YVGNL ++ L E+F +AG V + + DRVT+ +G+GFV S E+
Sbjct: 19 AERNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A AI++ + ++ G+ ++VN +A+ K +D ++ GNL
Sbjct: 79 ADYAIKILNMIKLYGKPIRVN---------KASQDKK-------SLDVGANLFIGNLDPD 122
Query: 227 LTSQGLRDAFQGQPGLL--SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + L D F G++ + K++ + TG SRGFGFV++++ E A++AMN
Sbjct: 123 VDEKLLYDTFSAF-GVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMN 175
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L++GNL + L + F+ G V + +I+ D T SRGFGFV+ S E +
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFESSD 168
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
+AI + + R + V++
Sbjct: 169 QAIEAMNNQHLCNRPITVSY 188
>gi|356550321|ref|XP_003543536.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Glycine max]
Length = 419
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 15/174 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y + L+ F G V S +I+ +++T + G+GFV S A+
Sbjct: 11 EEVRTLWIGDLQYWVDEGYLSHCFGHTGEVISIKIIRNKLTGQPEGYGFVEFVSHAAAER 70
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ +T ++N+ G R P+ H I+ G+L +
Sbjct: 71 VLQTYNGTQMPATDQTFRLNWASFGIGERRPDAAPE------------HSIFVGDLAPDV 118
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F+ P + AKV+ + T RS+G+GFV F + A+ MNGV
Sbjct: 119 TDYLLQETFRAHYPSVRGAKVVTDPNTARSKGYGFVKFSDENERNRAMTEMNGV 172
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNL +++ L + + G + S +I +GFGFV G+ A+EAI+
Sbjct: 229 IFVGNLDLNVSEEELKQNSLQFGEIVSVKI------QPGKGFGFVQFGTRASAEEAIQKM 282
Query: 175 DGSQIGGRTVKVNF-------PEVPRGGERAAMGPKLQNSYQGF 211
G IG + V++++ ++P GG M P ++Y G+
Sbjct: 283 QGKMIGQQVVRISWGRTLTARQDLP-GGWGPQMDPNQWSAYYGY 325
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 29/192 (15%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V D T RS+G+GFV E A+
Sbjct: 109 IFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTARSKGYGFVKFSDENERNRAMTE 168
Query: 174 FDGSQIGGRTVKVN--FPEVPRGG--------------ERAAMGPKLQNSYQGFVDSPHK 217
+G R ++++ P+ G A P +Q + +
Sbjct: 169 MNGVYCSTRPMRISAATPKKTTGAYAAPAAPVPKPVYPVPAYTSPVVQVQPPDYDVNNTT 228
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
I+ GNL ++ + L+ ++S K+ +GFGFV F T + A+ M
Sbjct: 229 IFVGNLDLNVSEEELKQNSLQFGEIVSVKI------QPGKGFGFVQFGTRASAEEAIQKM 282
Query: 278 NG------VVRL 283
G VVR+
Sbjct: 283 QGKMIGQQVVRI 294
>gi|121607153|ref|YP_994960.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae EF01-2]
gi|121551793|gb|ABM55942.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae EF01-2]
Length = 175
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F + G VASA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVASAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDGSQIGGRTVKVN 187
+G +GGR++ VN
Sbjct: 64 MNGQPLGGRSIVVN 77
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + + L AF + SAKV+ ER TGRS+GFGFV + + Q+A++
Sbjct: 3 NKLYVGNLPYSVRDGDLEQAFGQFGAVASAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 276 AMNG 279
MNG
Sbjct: 63 GMNG 66
>gi|384915859|ref|ZP_10016064.1| RNA-binding protein, RRM domain (modular protein)
[Methylacidiphilum fumariolicum SolV]
gi|384526721|emb|CCG91935.1| RNA-binding protein, RRM domain (modular protein)
[Methylacidiphilum fumariolicum SolV]
Length = 255
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 53/73 (72%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY++T S L E+FA+ G + + EI+ DR T+R++GFGFV M ++ A++A+ +
Sbjct: 170 KLYVGNLPYNLTDSDLFEIFAKVGPIKNVEIIRDRRTNRTKGFGFVEMADLDSARKAVTI 229
Query: 174 FDGSQIGGRTVKV 186
+ ++ GR + V
Sbjct: 230 LNRIEVMGRRIIV 242
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 196 ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 255
++ A P S + V S +K+Y GNL + LT L + F + + ++I +R T R
Sbjct: 150 QKEAQTPPPGQSIEELVTS-NKLYVGNLPYNLTDSDLFEIFAKVGPIKNVEIIRDRRTNR 208
Query: 256 SRGFGFVTFETAEDLQSALDAMNGVVRL 283
++GFGFV DL SA A+ + R+
Sbjct: 209 TKGFGFVEM---ADLDSARKAVTILNRI 233
>gi|168000120|ref|XP_001752764.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695927|gb|EDQ82268.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 176
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
++++G L + ++ +L F + G + A I+ DR T RGFGFVT + + +
Sbjct: 1 GKIFIGGLSWDTSTDNLQSHFKKYGEIIDAVIMKDRSTGHPRGFGFVTFADPDVCDKVV- 59
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
D I GRTV+ VPR + GPK + KI+ G + +T +
Sbjct: 60 -LDKHVIDGRTVEAK-KSVPRENLATSKGPKTK-----------KIFVGGIPPSITDEEF 106
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+ F G ++ +++ + TGRSRGFGFVTF++ + ++ L
Sbjct: 107 KSYFAGFGSVMEHQIMQDHSTGRSRGFGFVTFDSEQVVEDIL 148
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ +++VG +P S+T FA G+V +I+ D T RSRGFGFVT S E+ E
Sbjct: 88 KTKKIFVGGIPPSITDEEFKSYFAGFGSVMEHQIMQDHSTGRSRGFGFVTFDS-EQVVED 146
Query: 171 I 171
I
Sbjct: 147 I 147
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N +L ++FA+ G + S E++ V +S+GFGFV + EEA+ A++
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ--------NSYQGFVDSPHKIYAGNLGWG 226
S I G +K++ + ER A K YQG +Y NL
Sbjct: 273 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGV-----NLYVKNLDET 327
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ GL+ F+ + SAKV+ + GRS+GFGFV FE E+ SA+ MN
Sbjct: 328 VDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMN 378
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ +S A LYVG+L + S L E F+ AG V S + D T S G+ +V
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
+A+ A+ + + G+ +++ + + R+ G I+ NL
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG---------------NIFIKNLD 128
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ + D F +LS KV + G S+G+GFV FET E Q+A+ +NG++
Sbjct: 129 KVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGML 184
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL + + S+ + F+ G + S ++ D S+G+GFV + E A+ AI
Sbjct: 119 AGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAI 177
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ +G + G+ V V + RA +L + + F + +Y N G +
Sbjct: 178 QKVNGMLLAGKKVFVG-----KFQPRAQRNRELGETAKQFTN----VYVKNFGDHYNKET 228
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L F + S +V+ G+S+GFGFV F E+ ++A+ A++
Sbjct: 229 LEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALH 273
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+ + E E + E+ + + + LYV NL ++ L + F G + SA+++
Sbjct: 290 QKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVM 349
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D RS+GFGFV EEA A+ + + + + V
Sbjct: 350 TDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 389
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 16/171 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A
Sbjct: 53 HSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + I G+ ++ + + P L+ + QG ++ NL + ++
Sbjct: 113 LEDLNYTLIKGKPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAIDNK 157
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAATNAIKHVNGML 207
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAATNAIKHV 203
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + +Y NL +T++ R+
Sbjct: 204 NGMLLNEKKVFV--------GHHIAKKDR-QSKFEEMKANFTNVYVKNLDTEVTNEEFRE 254
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F + SA + + TG+SRGFGFV F E +A++ +N
Sbjct: 255 LFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELN 298
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 84/221 (38%), Gaps = 62/221 (28%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI--- 171
+YV NL +T+ E+F + G + SA I +D T +SRGFGFV E A A+
Sbjct: 238 VYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEEL 297
Query: 172 --RLFDGSQI-GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+ F G ++ GR K + E + A + + YQG +Y NL +
Sbjct: 298 NDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGV-----NLYVKNLTDDID 352
Query: 229 SQGLRDAFQGQPGLLSAKVI---------------------------------------- 248
+ LRD F G + SA+V+
Sbjct: 353 DEKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEEESSDKS 412
Query: 249 -----------FERYTGRSRGFGFVTFETAEDLQSALDAMN 278
E+ G+S+GFGFV F ++ A+ MN
Sbjct: 413 DKAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMN 453
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 18/205 (8%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
+T+ + ++ E ++++++A E V S +A LYVG+L S++ + L ++F+
Sbjct: 4 ITDKTAEQLENLNIQDDQKQAATGSESQSVENS--SASLYVGDLEPSVSEAHLYDIFSPI 61
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
G+V+S + D +T S G+ +V E ++AI + + I GR ++ +
Sbjct: 62 GSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMW-------- 113
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
+ P L+ G I+ NL + ++ L D F +LS+K+ + G+S
Sbjct: 114 -SQRDPSLRKKGSG------NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKS 165
Query: 257 RGFGFVTFETAEDLQSALDAMNGVV 281
+GFGFV FE + A+DA+NG++
Sbjct: 166 KGFGFVHFEEEGAAKEAIDALNGML 190
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N+ T E+FA+ G + SA + D + +GFGFV E+A +A+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ S++ G + V + ER + L+ Y+ + Y G NL +
Sbjct: 280 NDSELNGEKLYVG--RAQKKNERMHV---LKKQYEAYRLEKMAKYQGVNLFVKNLDDSVD 334
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ L + F + SAKV+ G+S+GFGFV F T E+ A+ N
Sbjct: 335 DEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL + + +L + F+ G + S++I D +S+GFGFV AKEAI
Sbjct: 125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAI 183
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ + V P + R ER + + + Y +Y N+ T +
Sbjct: 184 DALNGMLLNGQEIYVA-PHLSR-KERDSQLEETKAHYTN-------LYVKNINSETTDEQ 234
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
++ F ++SA + + G+ +GFGFV +E ED A++A+N
Sbjct: 235 FQELFAKFGPIVSAS-LEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A + L+V NL S+ L E FA GT+ SA+++ +S+GFGFV + EEA
Sbjct: 317 AKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEA 375
Query: 168 KEAIRLFDGSQIGGRTVKV 186
+AI + + G+ + V
Sbjct: 376 TKAITEKNQQIVAGKPLYV 394
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++T S L + F + GTV + + D VT RS G+G+V + ++A AI+
Sbjct: 22 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 81
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + G+ ++V + + P ++ S G I+ NL + + L D
Sbjct: 82 NYIPLYGKPIRVMY---------SHRDPSVRRSGAG------NIFIKNLDESIDHKALHD 126
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F ++S KV + +G+S+G+GFV + E Q A++ +NG++
Sbjct: 127 TFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGML 172
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 13/168 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL S+ +L + F+ G + S ++ D + +S+G+GFV + E A++AI
Sbjct: 107 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAI 165
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + + V V R ER + K + + +Y NL T
Sbjct: 166 EKLNGMLLNDKQVYVG--PFLRRQERDSTANKTKFT---------NVYVKNLAESTTDDD 214
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++AF G+ G +++ V+ + G+S+GFGFV FE A+D A++++NG
Sbjct: 215 LKNAF-GEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 261
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 13/188 (6%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ +E A + +YV NL S T L F E G + SA ++ D +S+GFG
Sbjct: 184 LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFG 242
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPH 216
FV + ++A A+ +G + + V R +++ +L+ Y Q ++
Sbjct: 243 FVNFENADDAARAVESLNGHKFDDKEWYVG-----RAQKKSERETELRVRYEQNLKEAAD 297
Query: 217 K-----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
K +Y NL ++ + L++ F + S+KV+ + G S+G GFV F T E+
Sbjct: 298 KFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEAT 356
Query: 272 SALDAMNG 279
A+ ++G
Sbjct: 357 EAMSQLSG 364
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASD-EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
++ E E E V E+ K AA +++ LYV NL S++ L E+F+ GTV S++++
Sbjct: 276 KKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMR 335
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D S+G GFV + EEA EA+ G I + + V
Sbjct: 336 DP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 374
>gi|367000405|ref|XP_003684938.1| hypothetical protein TPHA_0C03520 [Tetrapisispora phaffii CBS 4417]
gi|357523235|emb|CCE62504.1| hypothetical protein TPHA_0C03520 [Tetrapisispora phaffii CBS 4417]
Length = 442
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 27/208 (12%)
Query: 79 EDSQDEPETEQEEEEEEEAVEEEEEPKVAA---------SDEAARLYVGNLPYSMTSSSL 129
E+ +DE + Q+++E E++ V A SD+ LYVGNL S+ +L
Sbjct: 38 ENQEDENQDRQKDQESVGTAAEDDSDVVPANAINGGRETSDKI--LYVGNLDKSINEETL 95
Query: 130 AEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189
+ F G +++ +++ D+ + S + FV +A A + +G I + +K+N+
Sbjct: 96 KQYFQIGGPISNVKVINDK--NNSVNYAFVEYLQHHDADVAFKNLNGKTIETKVLKINW- 152
Query: 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIF 249
Q+ +S ++ G+L + + L AF P + A V++
Sbjct: 153 -------------AFQSQQTTSDESLFNLFVGDLNVDVDDETLGHAFSEFPSFVQAHVMW 199
Query: 250 ERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ TGRSRG+GF++F ED Q+A+D M
Sbjct: 200 DMQTGRSRGYGFISFSNQEDAQTAMDKM 227
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 109 SDEAA-RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
SDE+ L+VG+L + +L F+E + A +++D T RSRG+GF++ + E+A
Sbjct: 161 SDESLFNLFVGDLNVDVDDETLGHAFSEFPSFVQAHVMWDMQTGRSRGYGFISFSNQEDA 220
Query: 168 KEAIRLFDGSQIGGRTVKVNF 188
+ A+ +++ GR +++N+
Sbjct: 221 QTAMDKMQSTELNGRQIRINW 241
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+ + L E+F+ G V+S + D VT +S G+ +V E+ + A+
Sbjct: 50 SASLYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDGERAL 109
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ S I GR ++ + + P L+ + G I+ NL + ++
Sbjct: 110 EQLNYSLIDGRPCRIMW---------SQRDPSLRRNGDG------NIFIKNLHPDIDNKA 154
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + + GRS+ FGFV +ETAE +A++ +NG+
Sbjct: 155 LHDTFSAFGRILSCKVATDEH-GRSKCFGFVHYETAEAADAAIENVNGM 202
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 19/173 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVTMGSVEEAKEAIRL 173
++V N T + LA +F G + S + +++ ++ +S+GFGF+ + + A +A+
Sbjct: 234 VFVKNFGSDFTEAELAAMFEPYGKITS--LYFEKDSEGKSKGFGFINFENHDAAVKAVEE 291
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS--------YQGFVDSPHKIYAGNLGW 225
+ ++ G+ + V + R ER K + YQG ++ NL
Sbjct: 292 LNDKEVNGQKIYVGRAQKKR--ERIEELKKQYETTRLEKLSKYQGV-----NLFVKNLDD 344
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
LTS+ L + F+ + SAKV+ + TG+S+GFGFV F E+ A+ MN
Sbjct: 345 SLTSEMLEEEFKPFGTITSAKVMVDE-TGKSKGFGFVCFSAPEEATKAITEMN 396
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ L+V NL S+TS L E F GT+ SA+++ D T +S+GFGFV + EEA +A
Sbjct: 333 QGVNLFVKNLDDSLTSEMLEEEFKPFGTITSAKVMVDE-TGKSKGFGFVCFSAPEEATKA 391
Query: 171 IRLFDGSQIGGRTVKV 186
I + + G+ + V
Sbjct: 392 ITEMNQRMVLGKPLYV 407
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + + +L + F+ G + S ++ D RS+ FGFV + E A AI
Sbjct: 141 IFIKNLHPDIDNKALHDTFSAFGRILSCKVATDE-HGRSKCFGFVHYETAEAADAAIENV 199
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + +R A K + F + ++ N G T L
Sbjct: 200 NGMSLNDREVFVG--KHISKKDRVA---KFEEMKANFTN----VFVKNFGSDFTEAELAA 250
Query: 235 AFQGQPGLLSAKVIFERYT-GRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S + FE+ + G+S+GFGF+ FE + A++ +N
Sbjct: 251 MFEPYGKITS--LYFEKDSEGKSKGFGFINFENHDAAVKAVEELN 293
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N +L ++FA+ G + S E++ V +S+GFGFV + EEA+ A++
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQAL 212
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ--------NSYQGFVDSPHKIYAGNLGWG 226
S I G +K++ + ER A K YQG +Y NL
Sbjct: 213 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGV-----NLYVKNLDET 267
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ GL+ F+ + SAKV+ + GRS+GFGFV FE E+ SA+ MN
Sbjct: 268 VDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMN 318
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 28/196 (14%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ +S A LYVG+L + S L E F+ AG V S + D T S G+ +V
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNF----PEVPRGG------------------ERAAMGP 202
+A+ A+ + + G+ +++ + P + R G RA
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKFQPRAQRNR 143
Query: 203 KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFV 262
+L + + F + +Y N G + L F + S +V+ G+S+GFGFV
Sbjct: 144 ELGETAKQFTN----VYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFV 197
Query: 263 TFETAEDLQSALDAMN 278
F E+ ++A+ A++
Sbjct: 198 AFANPEEAETAVQALH 213
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+ + E E + E+ + + + LYV NL ++ L + F G + SA+++
Sbjct: 230 QKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVM 289
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D RS+GFGFV EEA A+ + + + + V
Sbjct: 290 TDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 329
>gi|154296105|ref|XP_001548485.1| hypothetical protein BC1G_12782 [Botryotinia fuckeliana B05.10]
Length = 518
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 8/200 (4%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
P +++ E+E EA ++ + + A D ++ L+VGNL +++ L F E G ++ A
Sbjct: 237 PSKKRKAEDEPEASTKKSKTEETAEDNGSKNLFVGNLSWNIDDEWLYREFEEFGEISGAR 296
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
++ D+ T RS+GFG+V +A A+ G+ I GR V+F PR + A +
Sbjct: 297 VISDKATGRSKGFGYVEFVKSSDAAAALAAKKGALIDGREANVDF-STPR--DTTAPRER 353
Query: 204 LQNSYQGFVDSPH----KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF 259
N F D+ + ++ GNL + + +AF +++ ++ ++ TG +GF
Sbjct: 354 ANNRAAQFGDAKNPPSDTLFLGNLSFDADENVVGEAFGEHGTVVNVRLPTDQETGNPKGF 413
Query: 260 GFVTFETAEDLQSALDAMNG 279
G+VTF + ED +A DAM G
Sbjct: 414 GYVTFGSVEDATAAYDAMMG 433
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL + + + E F E GTV + + D+ T +GFG+VT GSVE+A A
Sbjct: 372 LFLGNLSFDADENVVGEAFGEHGTVVNVRLPTDQETGNPKGFGYVTFGSVEDATAAYDAM 431
Query: 175 DGSQIGGRTVKVNF 188
G+ I GR V++++
Sbjct: 432 MGADIAGRPVRLDY 445
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N +L ++FA+ G + S E++ V +S+GFGFV + EEA+ A++
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQAL 209
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ--------NSYQGFVDSPHKIYAGNLGWG 226
S I G +K++ + ER A K YQG +Y NL
Sbjct: 210 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGV-----NLYVKNLDET 264
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ GL+ F+ + SAKV+ + GRS+GFGFV FE E+ SA+ MN
Sbjct: 265 VDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMN 315
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL + + S+ + F+ G + S ++ D S+G+GFV + E A+ AI
Sbjct: 56 AGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAI 114
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ +G + G+ V V + RA +L + + F + +Y N G +
Sbjct: 115 QKVNGMLLAGKKVFVG-----KFQPRAQRNRELGETAKQFTN----VYVKNFGDHYNKET 165
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L F + S +V+ G+S+GFGFV F E+ ++A+ A++
Sbjct: 166 LEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALH 210
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+ + E E + E+ + + + LYV NL ++ L + F G + SA+++
Sbjct: 227 QKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVM 286
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D RS+GFGFV EEA A+ + + + + V
Sbjct: 287 TDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 326
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
I+ NL + ++ + D F +LS KV + G S+G+GFV FET E Q+A+ +
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKV 117
Query: 278 NGVV 281
NG++
Sbjct: 118 NGML 121
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 24/171 (14%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L + +T S L ++F + G V S I D + +S G+G+V + +A +A+ +
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 175 DGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + + +++ + P V + G I+ NL + +
Sbjct: 86 NFTPLNNKPIRIMYSHRDPSVRKSGAA-------------------NIFIKNLDRAIDHK 126
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS K+ + +G S+G+GFV FE E QSA+D +NG++
Sbjct: 127 ALYDTFSIFGNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKLNGML 176
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
+P V S AA +++ NL ++ +L + F+ G + S +I D + S+G+GFV
Sbjct: 101 HRDPSVRKSG-AANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQ 158
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYA 220
+ E A+ AI +G + + V V + + + A K N +Y
Sbjct: 159 FENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNN-----------VYV 207
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL +T L++ F G+ G +++ V+ G+S+ FGFV FE A+ A++A+NG
Sbjct: 208 KNLSESVTDDDLKNTF-GEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNG 265
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 7/168 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL S+T L F E GT+ SA ++ D V +S+ FGFV + + A EA+
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRD-VDGKSKCFGFVNFENADAAAEAVEAL 263
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQG 231
+G + + V + + ER + + + S + VD + +Y NL +T +
Sbjct: 264 NGKKFDDKEWYVG--KALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEK 321
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + F + G +++ I G SRG GFV F T E+ AL MNG
Sbjct: 322 LSELF-SEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNG 368
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 92 EEEEEAVEEEEEPKVAASDE--AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E E E E+ D+ A LY+ NL S+T L+E+F+E GTV S +I+ D
Sbjct: 283 ERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDP- 341
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
SRG GFV + EEA A+ +G + G+ + V
Sbjct: 342 QGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYV 378
>gi|299530322|ref|ZP_07043747.1| RNA-binding region RNP-1 [Comamonas testosteroni S44]
gi|298721693|gb|EFI62625.1| RNA-binding region RNP-1 [Comamonas testosteroni S44]
Length = 113
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ ++YVGNLPYS+T S+L FAE GTV SA+++ DR T RS+GF FV M S +E + AI
Sbjct: 2 STKIYVGNLPYSVTDSNLRSNFAEFGTVTSAKVMMDRETGRSKGFAFVEMTSADECQAAI 61
Query: 172 RLFDGSQIGGRTVKVNFPEVPR------GGER 197
G + GR++ VN + PR GG R
Sbjct: 62 SALHGMSVDGRSIVVNLAK-PREEGRGFGGNR 92
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
KIY GNL + +T LR F + SAKV+ +R TGRS+GF FV +A++ Q+A+ A
Sbjct: 4 KIYVGNLPYSVTDSNLRSNFAEFGTVTSAKVMMDRETGRSKGFAFVEMTSADECQAAISA 63
Query: 277 MNGV 280
++G+
Sbjct: 64 LHGM 67
>gi|241766569|ref|ZP_04764426.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
gi|241363173|gb|EER58764.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
Length = 116
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ S L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDGSQIGGRTVKVN 187
+G +GGR++ VN
Sbjct: 64 MNGQPLGGRSIVVN 77
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + + L AF + SAKV+ ER TGRS+GFGFV + + Q+A++
Sbjct: 3 NKLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 276 AMNG 279
MNG
Sbjct: 63 GMNG 66
>gi|350536139|ref|NP_001234487.1| DNA-binding protein [Solanum lycopersicum]
gi|40804404|gb|AAR91698.1| DNA-binding protein [Solanum lycopersicum]
Length = 428
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 94/176 (53%), Gaps = 9/176 (5%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
AS++ +++G+L M L FA+AG V S +++ ++ T +S +GF+ + E A
Sbjct: 74 ASEDNRTIWIGDLQQWMDEGYLHTCFAQAGEVISVKVIRNKQTGQSERYGFIEFNTHEAA 133
Query: 168 KEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
++ ++ ++G+ + + ++N+ G +RA +G + S I+ G+L
Sbjct: 134 EKVLQSYNGTMMPNAEQPFRLNWSAFSSGEKRADVGAGAGSG------SDLSIFVGDLAS 187
Query: 226 GLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T LRD F + P + AKV+ + TGRS+G+GFV F+ + A+ MNG+
Sbjct: 188 DVTDTMLRDTFSSRYPSVKGAKVVIDSNTGRSKGYGFVRFDDESERSRAMTEMNGI 243
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 21/190 (11%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
A S ++VG+L +T + L + F+ +V A++V D T RS+G+GFV
Sbjct: 172 AGSGSDLSIFVGDLASDVTDTMLRDTFSSRYPSVKGAKVVIDSNTGRSKGYGFVRFDDES 231
Query: 166 EAKEAIRLFDGSQIGGRTVKVN-------------FPE-VPRGGERAAMGPKLQNSYQGF 211
E A+ +G R +++ FP+ V G A+ G Q S
Sbjct: 232 ERSRAMTEMNGIYCSSRAMRIGVATPKKPSPMQQYFPQAVILAGGHASNGAATQTSQTDS 291
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
S ++ G L +T + LR +F ++S K+ +G GFV F +
Sbjct: 292 DLSNTTVFVGGLDSEVTDEELRQSFSQFGNVVSVKIP------AGKGCGFVQFSERSAAE 345
Query: 272 SALDAMNGVV 281
A++ +NG V
Sbjct: 346 DAIEKLNGTV 355
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L +T L + F++ G V S +I +G GFV A++AI
Sbjct: 298 VFVGGLDSEVTDEELRQSFSQFGNVVSVKI------PAGKGCGFVQFSERSAAEDAIEKL 351
Query: 175 DGSQIGGRTVKVNFPEVPRGGE-RAAMGPKLQNSYQG 210
+G+ IG +TV++++ P + R G + Y G
Sbjct: 352 NGTVIGAQTVRLSWGRNPANKQFRTDSGSQWNGGYYG 388
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++T S L + F + GTV + + D VT RS G+G+V + ++A AI+
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + G+ ++V + + P ++ S G I+ NL + + L D
Sbjct: 98 NYIPLYGKPIRVMY---------SHRDPSVRRSGAG------NIFIKNLDESIDHKALHD 142
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F ++S KV + +G+S+G+GFV + E Q A++ +NG++
Sbjct: 143 TFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGML 188
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 13/168 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL S+ +L + F+ G + S ++ D + +S+G+GFV + E A++AI
Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAI 181
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + + V V R ER + K + + +Y NL T
Sbjct: 182 EKLNGMLLNDKQVYVG--PFLRRQERDSTANKTKFT---------NVYVKNLAESTTDDD 230
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++AF G+ G +++ V+ + G+S+GFGFV FE A+D A++++NG
Sbjct: 231 LKNAF-GEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 13/188 (6%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ +E A + +YV NL S T L F E G + SA ++ D +S+GFG
Sbjct: 200 LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFG 258
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPH 216
FV + ++A A+ +G + + V R +++ +L+ Y Q ++
Sbjct: 259 FVNFENADDAARAVESLNGHKFDDKEWYVG-----RAQKKSERETELRVRYEQNLKEAAD 313
Query: 217 K-----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
K +Y NL ++ + L++ F + S+KV+ + G S+G GFV F T E+
Sbjct: 314 KFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEAT 372
Query: 272 SALDAMNG 279
A+ ++G
Sbjct: 373 EAMSQLSG 380
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASD-EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
++ E E E V E+ K AA +++ LYV NL S++ L E+F+ GTV S++++
Sbjct: 292 KKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMR 351
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D S+G GFV + EEA EA+ G I + + V
Sbjct: 352 DP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390
>gi|354545437|emb|CCE42165.1| hypothetical protein CPAR2_807140 [Candida parapsilosis]
Length = 420
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 20/215 (9%)
Query: 75 FQVTEDSQDE--PETEQEEEEEEEAVEEEEEPKVAAS-DEAAR------LYVGNLPYSMT 125
+ T+ S D PE+ Q+E E + +E P AS E R LYVGNLP S +
Sbjct: 7 IEATQTSPDNAVPESNQQENEVTQDESKESTPVTPASATEGGRETSNKILYVGNLPKSAS 66
Query: 126 SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185
++E+F+ + + S +++ D+ + F+ +EA A+ +G + ++
Sbjct: 67 EEQISELFSVSKPIKSIKLLNDK-NKLGFNYAFIEFDDNQEADMALSTLNGKLLNNCEIR 125
Query: 186 VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSA 245
VN+ + A + S D + ++ G+L + + L+ AF A
Sbjct: 126 VNW-----AYQSATIA-----SSSTPEDPTYNLFVGDLSSEVNDEALKKAFNKFDSFKEA 175
Query: 246 KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
V+++ T RSRG+GFVTF ED + AL MNG
Sbjct: 176 HVMWDMQTSRSRGYGFVTFSKQEDAELALQTMNGA 210
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D L+VG+L + +L + F + + A +++D T RSRG+GFVT E+A+
Sbjct: 143 DPTYNLFVGDLSSEVNDEALKKAFNKFDSFKEAHVMWDMQTSRSRGYGFVTFSKQEDAEL 202
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A++ +G+ +GGR ++ N+
Sbjct: 203 ALQTMNGAWLGGRAIRCNW 221
>gi|255945691|ref|XP_002563613.1| Pc20g11240 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588348|emb|CAP86453.1| Pc20g11240 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 356
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 77/152 (50%), Gaps = 18/152 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL + +T+ L + F + G V +A IV+D S+GFG+VT +VEEA +AI
Sbjct: 123 LYVGNLFFDVTAEDLRKHFEKYGAVENALIVHD-ARGLSKGFGYVTFSTVEEATQAITQQ 181
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDS-PHK-IYAGNLGWGLTSQGL 232
G + GR V V F +Y+ ++ P K +Y GNL + LT Q L
Sbjct: 182 HGGILEGREVVVQFS---------------NTTYRAMAENKPSKTLYIGNLPYELTDQDL 226
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
+D G+ ++ +R TG RGF + F
Sbjct: 227 QDLIADLHGVTDVRIPVDRRTGLPRGFAHIDF 258
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A + + LY+GNLPY +T L ++ A+ V I DR T RGF +
Sbjct: 203 MAENKPSKTLYIGNLPYELTDQDLQDLIADLHGVTDVRIPVDRRTGLPRGFAHIDFLEQS 262
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
A L + GR + VNF R + P+ YQ
Sbjct: 263 NATHGKELLSRKEPYGRKLFVNF------ARRKVLSPEDFQRYQ 300
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y GNL + +T++ LR F+ G + +I G S+GFG+VTF T E+ A+
Sbjct: 123 LYVGNLFFDVTAEDLRKHFEKY-GAVENALIVHDARGLSKGFGYVTFSTVEEATQAITQQ 181
Query: 278 NG 279
+G
Sbjct: 182 HG 183
>gi|389644626|ref|XP_003719945.1| RNA splicing factor Pad-1 [Magnaporthe oryzae 70-15]
gi|351639714|gb|EHA47578.1| RNA splicing factor Pad-1 [Magnaporthe oryzae 70-15]
Length = 564
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 10/179 (5%)
Query: 104 PKVAASDEAAR--LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
P DE R ++V L + + L E F +AG VA A+IV DRV++RS+G G+V
Sbjct: 164 PPALTEDERDRRTVFVQQLAARLRTRELKEFFEKAGPVAEAQIVKDRVSNRSKGVGYVEF 223
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ E A++L G ++ G V V E + Q + F H++Y G
Sbjct: 224 KTEESVAAALQLT-GQKLLGIPVIVQPTEAEKNRAVKTESTGTQQTSVPF----HRLYVG 278
Query: 222 NLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
N+ + +T Q L++ F +P G L + + +GRSRG+GFV F A + AL+ MNG
Sbjct: 279 NIHFSITEQDLQNVF--EPFGELEFVQLQKDDSGRSRGYGFVQFRDATQAREALEKMNG 335
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
E E+ AV+ E S RLYVGN+ +S+T L VF G + ++ D +
Sbjct: 251 EAEKNRAVKTESTGTQQTSVPFHRLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDD-S 309
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF------PEVPRGGERAAMGPKL 204
RSRG+GFV +A+EA+ +G + GR ++V PE R GP
Sbjct: 310 GRSRGYGFVQFRDATQAREALEKMNGFDLAGRPIRVGLGNDKFTPESTANLLRGFQGPNG 369
Query: 205 QNSYQG 210
Q YQG
Sbjct: 370 QQQYQG 375
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 16/171 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A
Sbjct: 53 HSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + I G+ ++ + + P L+ + QG ++ NL + ++
Sbjct: 113 LEDLNYTLIKGKPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAIDNK 157
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAATNAIKHVNGML 207
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAATNAIKHV 203
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + +Y NL +T++ R+
Sbjct: 204 NGMLLNEKKVFV--------GHHIAKKDR-QSKFEEMKANFTNVYVKNLDTKVTNEEFRE 254
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F + SA + + TG+SRGFGFV F E +A++ +N
Sbjct: 255 LFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELN 298
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 84/221 (38%), Gaps = 62/221 (28%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI--- 171
+YV NL +T+ E+F + G + SA I +D T +SRGFGFV E A A+
Sbjct: 238 VYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEEL 297
Query: 172 --RLFDGSQI-GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+ F G ++ GR K + E + A + + YQG +Y NL +
Sbjct: 298 NDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGV-----NLYVKNLTDDID 352
Query: 229 SQGLRDAFQGQPGLLSAKVI---------------------------------------- 248
+ LRD F G + SA+V+
Sbjct: 353 DEKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEEESSDKS 412
Query: 249 -----------FERYTGRSRGFGFVTFETAEDLQSALDAMN 278
E+ G+S+GFGFV F ++ A+ MN
Sbjct: 413 DKAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMN 453
>gi|5929884|gb|AAD56625.1|AF151373_1 nucleolin-related protein NRP [Rattus norvegicus]
Length = 715
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 487 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 542
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GR +++ + PRG A P ++ L T
Sbjct: 543 EALNSCNKREIEGRAIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 589
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ LR++F G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 590 EETLRESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 635
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 35/189 (18%)
Query: 102 EEPKVAAS--DEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
E+PK S D AR L NLPY +T L EVF +A EI +S+G +
Sbjct: 384 EKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA-----VEIRLVSKDGKSKGIAY 438
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDS---- 214
+ + +A++ G++I GR++ + + GE+ Y+G +S
Sbjct: 439 IEFKTEADAEKTFEEKQGTEIDGRSISLYY-----TGEKGQ-----SQDYRGGKNSTWSG 488
Query: 215 -PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAED 269
+ NL + T + L++ F+ K F + G+S+G+ F+ F + ED
Sbjct: 489 ESKTLVLSNLSYSATEETLQEVFE--------KATFIKVPQNQNGKSKGYAFIEFASFED 540
Query: 270 LQSALDAMN 278
+ AL++ N
Sbjct: 541 AKEALNSCN 549
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 571 ARSQPSKTLFVKGLSEDTTEETLRESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEED 627
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 628 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 654
>gi|388579312|gb|EIM19637.1| hypothetical protein WALSEDRAFT_33897 [Wallemia sebi CBS 633.66]
Length = 423
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR-VTDRSRGFGFVTMGSVEEAKEAI 171
A LYVGNL +T L E+FA AG V S +I+ DR + +GFV + A+ A+
Sbjct: 15 AHLYVGNLSPRVTEYMLTEIFAVAGHVQSVKIIPDRNFSHGGLNYGFVEYTDMRAAETAL 74
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ +G +I ++VN+ A G N+ Q + ++ G+L + +
Sbjct: 75 QTLNGRKIFDTEIRVNW---------AYQG----NNKQEDTTNHFHVFVGDLSPEVNDEI 121
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L AF G + A+V+++ TG+SRG+GF++F D + A+ MNG
Sbjct: 122 LSKAFSGFKSISDARVMWDMNTGKSRGYGFLSFREKTDAEQAISTMNG 169
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 18/180 (10%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L + L++ F+ +++ A +++D T +SRG+GF++ +A++AI
Sbjct: 107 HVFVGDLSPEVNDEILSKAFSGFKSISDARVMWDMNTGKSRGYGFLSFREKTDAEQAIST 166
Query: 174 FDGSQIGGRTVKVNFP--EVPRGGERAAMGPKLQNSYQG-------FVDSP---HKIYAG 221
+G +G R ++VN+ + G R N++ G F +P +Y G
Sbjct: 167 MNGEWLGSRAIRVNWANQKTQTGSHRLNDLMPTMNAFNGPLSYEAVFQQTPAYNTTVYIG 226
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
NL T L FQ + I E RGF FV ++ E+ A+ + G +
Sbjct: 227 NLTPYTTQADLVPIFQ------AFGYIIEVRMQADRGFAFVKLDSHENASMAIVQLQGTL 280
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+GNL T + L +F G + + DR GF FV + S E A AI
Sbjct: 223 VYIGNLTPYTTQADLVPIFQAFGYIIEVRMQADR------GFAFVKLDSHENASMAIVQL 276
Query: 175 DGSQIGGRTVKVNF 188
G+ I GR +K ++
Sbjct: 277 QGTLIQGRPIKCSW 290
>gi|145354241|ref|XP_001421399.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581636|gb|ABO99692.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 288
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 12/173 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ARLYVGN+P+S T L E+FAE G V +I R RSRG+G V S EA+ A+
Sbjct: 8 SARLYVGNIPWSTTIEDLRELFAECGGVTRVDIPTGR-QGRSRGYGLVEFNSEAEAQAAV 66
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-----HKIYAGNLGWG 226
DG+ +G RT+ V + P A G + S D+P + Y GNL W
Sbjct: 67 TRMDGTPLGDRTITVREDKAP----TKAAGGAKKASASVLGDAPAGGDGCRCYFGNLAW- 121
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYT-GRSRGFGFVTFETAEDLQSALDAMN 278
TS+ + G+ + R + GRS+G+ V F T E+ Q+A++ M+
Sbjct: 122 ETSEETLTSHCASFGVNVVQCEVARQSGGRSKGWALVDFATPEEAQNAIEQMH 174
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 8/174 (4%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A + R Y GNL + + +L A G V + RS+G+ V + EEA
Sbjct: 107 AGGDGCRCYFGNLAWETSEETLTSHCASFGVNVVQCEVARQSGGRSKGWALVDFATPEEA 166
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ AI S+I GR++ V E P G+++A + + +NS S +I NL W
Sbjct: 167 QNAIEQMHNSEIQGRSIIVRV-ERPGAGQKSARVETRPENS------SGLQIVVRNLPWT 219
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
TS+ LR FQ +++A + TGRS+G+G V FET E Q+A+ NGV
Sbjct: 220 TTSEDLRQVFQQVGNVVNAVAVCHTDTGRSKGWGTVLFETREQAQAAIQGFNGV 273
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
S ++Y GN+ W T + LR+ F G+ + R GRSRG+G V F + + Q+A
Sbjct: 7 SSARLYVGNIPWSTTIEDLRELFAECGGVTRVDIPTGRQ-GRSRGYGLVEFNSEAEAQAA 65
Query: 274 LDAMNG 279
+ M+G
Sbjct: 66 VTRMDG 71
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++ V NLP++ TS L +VF + G V +A V T RS+G+G V + E+A+ AI+
Sbjct: 210 QIVVRNLPWTTTSEDLRQVFQQVGNVVNAVAVCHTDTGRSKGWGTVLFETREQAQAAIQG 269
Query: 174 FDGSQIGGRTVKVNF 188
F+G ++ R +++
Sbjct: 270 FNGVELEHRPMQIKL 284
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L S+T S L E+F++AG V S + D + RS G+ +V + +A A+ L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G+ ++V + R+ I+ NL + + L D
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSGSA---------------NIFIKNLDKAIDHKTLHD 145
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + G+S+GFGFV ++ E QSA+ ++NG++
Sbjct: 146 TFSAFGNILSCKVATDE-MGQSKGFGFVQYDKGEAAQSAIKSLNGML 191
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A +++ NL ++ +L + F+ G + S ++ D + +S+GFGFV E A+ AI
Sbjct: 126 SANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEM-GQSKGFGFVQYDKGEAAQSAI 184
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS-YQGFVDSP--HKIYAGNLGWGLT 228
+ +G I + V V GP L+ + VD + ++ NL T
Sbjct: 185 KSLNGMLINDKPVYV--------------GPFLRKQERENSVDKTKFNNVFVKNLSESTT 230
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L F G G +++ VI G+SR FGF+ F++ +D A++ +NG
Sbjct: 231 KEDLVKIF-GAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNG 280
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 13/171 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S T L ++F G + SA I+ + +SR FGF+ S ++A A+
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVG-MDGKSRCFGFINFKSPDDAARAVEEL 278
Query: 175 DGSQIG------GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+G +I GR K + E+ + YQG +Y NL +
Sbjct: 279 NGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGL-----NLYMKNLDDSIG 333
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + F + S K++ + G S+G GFV F T E+ AL MNG
Sbjct: 334 DDQLCELFSNYGKITSCKIMRDA-NGVSKGSGFVAFSTREEASQALTEMNG 383
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E E E E+ A+D + LY+ NL S+ L E+F+ G + S +I+
Sbjct: 294 QKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIM 353
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
D S+G GFV + EEA +A+ +G I G+ + V F + R +R M
Sbjct: 354 RD-ANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQ--RKEDRKVM 405
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L S+T S L E+F++AG V S + D + RS G+ +V + +A A+ L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G+ ++V + R+ I+ NL + + L D
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSGSA---------------NIFIKNLDKAIDHKTLHD 145
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + G+S+GFGFV ++ E QSA+ ++NG++
Sbjct: 146 TFSAFGNILSCKVATDE-MGQSKGFGFVQYDKGEAAQSAIKSLNGML 191
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A +++ NL ++ +L + F+ G + S ++ D + +S+GFGFV E A+ AI
Sbjct: 126 SANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEM-GQSKGFGFVQYDKGEAAQSAI 184
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS-YQGFVDSP--HKIYAGNLGWGLT 228
+ +G I + V V GP L+ + VD + ++ NL T
Sbjct: 185 KSLNGMLINDKPVYV--------------GPFLRKQERENSVDKTKFNNVFVKNLSESTT 230
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L F G G +++ VI G+SR FGF+ F++ +D A++ +NG
Sbjct: 231 KEDLVKIF-GAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNG 280
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 13/171 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S T L ++F G + SA I+ + +SR FGF+ S ++A A+
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVG-MDGKSRCFGFINFKSPDDAARAVEEL 278
Query: 175 DGSQIG------GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+G +I GR K + E+ + YQG +Y NL +
Sbjct: 279 NGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGL-----NLYMKNLDDSIG 333
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + F + S K++ + G S+G GFV F T E+ AL MNG
Sbjct: 334 DDQLCELFSNYGKITSCKIMRDA-NGVSKGSGFVAFSTREEASQALTEMNG 383
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E E E E+ A+D + LY+ NL S+ L E+F+ G + S +I+
Sbjct: 294 QKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIM 353
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
D S+G GFV + EEA +A+ +G I G+ + V F + R +R AM
Sbjct: 354 RD-ANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQ--RKEDRKAM 405
>gi|239818248|ref|YP_002947158.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
gi|239804825|gb|ACS21892.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
Length = 181
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ S L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDGSQIGGRTVKVN 187
+G +GGR+V VN
Sbjct: 64 MNGQPLGGRSVVVN 77
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + + L AF + SAKV+ ER TGRS+GFGFV + + Q+A++
Sbjct: 3 NKLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 276 AMNG 279
MNG
Sbjct: 63 GMNG 66
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F++ G S ++ D + +S+GFGFV+ E+
Sbjct: 112 ARAKEFTNVYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDE-SGKSKGFGFVSFERHED 170
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA--------MGPKLQNSYQGFVDSPHKI 218
A+ A+ +G ++ G+ V V + GER M YQG +
Sbjct: 171 AQRAVDEMNGKEMNGKQVYVG--RAQKKGERQTELKRKFEQMKQDRMTRYQGV-----NL 223
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL GL + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MN
Sbjct: 224 YVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 281
Query: 279 GVV 281
G +
Sbjct: 282 GRI 284
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 28 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKM 85
Query: 175 DGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + R V V RG E A + N +Y N G + + L
Sbjct: 86 NGMLLNDRKVFVGRFKSRKERGAEMGARAKEFTN-----------VYIKNFGEDMDDEKL 134
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ F LS +V+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 135 KEIFSKYGPALSIRVMTDE-SGKSKGFGFVSFERHEDAQRAVDEMNG 180
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
I+ NL + ++ L D F +LS KV+ + S+G+GFV FET E + A++ M
Sbjct: 28 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKM 85
Query: 278 NGVV 281
NG++
Sbjct: 86 NGML 89
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 16/171 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A
Sbjct: 53 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + I G+ ++ + + P L+ + QG ++ NL + ++
Sbjct: 113 LEDLNYTLIKGKPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAIDNK 157
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAATNAIKHVNGML 207
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAATNAIKHV 203
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + +Y NL ++++ R+
Sbjct: 204 NGMLLNEKKVFV--------GHHIAKKDR-QSKFEEMKANFTNVYVKNLDTEVSNEEFRE 254
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + TG+SRGFGF F E +A++ +N
Sbjct: 255 LFEKYGEITSASISRDGETGKSRGFGFFYFLKHESAAAAVEELN 298
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 79/222 (35%), Gaps = 64/222 (28%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL +++ E+F + G + SA I D T +SRGFGF E A A+
Sbjct: 238 VYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKHESAAAAVEEL 297
Query: 175 DGSQIGGRTVKVNFPEVP-------RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ + G+ + V + R AA K + YQG +Y NL +
Sbjct: 298 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKA-SKYQGV-----NLYVKNLTDDI 351
Query: 228 TSQGLRDAF---------------QGQPGLLS---------------------------- 244
+ LRD F G PG S
Sbjct: 352 DDEKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADK 411
Query: 245 --------AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+K E+ G+S+GFGFV F ++ A+ MN
Sbjct: 412 SDKVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMN 453
>gi|395823283|ref|XP_003803977.1| PREDICTED: LOW QUALITY PROTEIN: nucleolin [Otolemur garnettii]
Length = 700
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 476 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 531
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GR +++ + PRG A P ++ L T
Sbjct: 532 EALNSCNKREIEGRAIRLEL-QAPRGSPNARSQPS------------KTLFVKGLSEDTT 578
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 579 EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 624
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 37/190 (19%)
Query: 102 EEPKVAAS--DEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
E+PK S D AR L NLPY +T L EVF +A +I +S+G +
Sbjct: 373 EKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA-----MDIRIVSKDGKSKGIAY 427
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-SYQGFVDS--- 214
+ + +A++ G++I GR++ + + G K QN Y+G +S
Sbjct: 428 IEFKTEADAEKTFEEKQGTEIDGRSISLYY-----------TGEKGQNQDYRGGKNSTWS 476
Query: 215 --PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAE 268
+ NL + T + L++ F+ K F + G+S+G+ F+ F + E
Sbjct: 477 GESKTLVLSNLSYSATEETLQEVFE--------KATFIKVPQNQNGKSKGYAFIEFASFE 528
Query: 269 DLQSALDAMN 278
D + AL++ N
Sbjct: 529 DAKEALNSCN 538
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 560 ARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEED 616
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 617 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 643
>gi|440470687|gb|ELQ39749.1| RNA-binding protein rsd1 [Magnaporthe oryzae Y34]
Length = 566
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 10/179 (5%)
Query: 104 PKVAASDEAAR--LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
P DE R ++V L + + L E F +AG VA A+IV DRV++RS+G G+V
Sbjct: 164 PPALTEDERDRRTVFVQQLAARLRTRELKEFFEKAGPVAEAQIVKDRVSNRSKGVGYVEF 223
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ E A++L G ++ G V V E + Q + F H++Y G
Sbjct: 224 KTEESVAAALQLT-GQKLLGIPVIVQPTEAEKNRAVKTESTGTQQTSVPF----HRLYVG 278
Query: 222 NLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
N+ + +T Q L++ F +P G L + + +GRSRG+GFV F A + AL+ MNG
Sbjct: 279 NIHFSITEQDLQNVF--EPFGELEFVQLQKDDSGRSRGYGFVQFRDATQAREALEKMNG 335
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
E E+ AV+ E S RLYVGN+ +S+T L VF G + ++ D +
Sbjct: 251 EAEKNRAVKTESTGTQQTSVPFHRLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDD-S 309
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF------PEVPRGGERAAMGPKL 204
RSRG+GFV +A+EA+ +G + GR ++V PE R GP
Sbjct: 310 GRSRGYGFVQFRDATQAREALEKMNGFDLAGRPIRVGLGNDKFTPESTANLLRGFQGPNG 369
Query: 205 QNSYQG 210
Q YQG
Sbjct: 370 QQQYQG 375
>gi|115445085|ref|NP_001046322.1| Os02g0221500 [Oryza sativa Japonica Group]
gi|46806500|dbj|BAD17624.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|46806519|dbj|BAD17632.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|113535853|dbj|BAF08236.1| Os02g0221500 [Oryza sativa Japonica Group]
Length = 397
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
++ + D + +++VG + + T S ++ F + G + + I+ D+ T RGFGFVT
Sbjct: 55 DDGRAPGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTF 114
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ L D I GRTV+V VPR + GPK + KI+ G
Sbjct: 115 SDPSVIDKV--LEDEHVIDGRTVEVK-RTVPREEMSSKDGPKTR-----------KIFVG 160
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
L LT LR+ F ++ +++ + TGRSRGFGFVTFE+ + ++ +
Sbjct: 161 GLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVI 213
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG LP S+T L E F+ G + +I+ D T RSRGFGFVT S + + I
Sbjct: 156 KIFVGGLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISE 215
Query: 174 FDGSQIGGRTVKVNFPEVPRGG 195
+GG+ V++ E + G
Sbjct: 216 GRMRDLGGKQVEIKKAEPKKHG 237
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
DS KI+ G + W T + F+ + + ++ +++T RGFGFVTF +
Sbjct: 63 DSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDK 122
Query: 273 ALD 275
L+
Sbjct: 123 VLE 125
>gi|354502803|ref|XP_003513471.1| PREDICTED: nucleolin [Cricetulus griseus]
Length = 762
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 531 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDAK 586
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 587 EALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 633
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F+G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 634 EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 679
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
Query: 112 AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
AAR L NL +++T L EVF +A EI +S+G ++ S +A++
Sbjct: 441 AARTLLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEADAEKN 495
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR+V + + G+R K +++ G + NL + T +
Sbjct: 496 LEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSG---ESKTLVLSNLSYSATEE 549
Query: 231 GLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L++ F+ K F + G+S+G+ F+ F + ED + AL++ N
Sbjct: 550 TLQEVFE--------KATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCN 593
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 615 ARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEED 671
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 672 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 698
>gi|356500047|ref|XP_003518846.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 431
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 14/177 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A+SDE +++G+L + M + L FA G V SA+++ ++ T +S G+GFV S
Sbjct: 94 ASSDEIRTVWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRGT 153
Query: 167 AKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
A++ ++ ++G+ + + ++N+ G R++ S I+ G+L
Sbjct: 154 AEKVLQNYNGTMMPNTDQAFRLNWATFSAGERRSSDAT-----------SDLSIFVGDLA 202
Query: 225 WGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T L+D F G+ + AKV+ + TGRS+G+GFV F + A+ MNGV
Sbjct: 203 IDVTDAMLQDTFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGV 259
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 24/184 (13%)
Query: 115 LYVGNLPYSMTSSSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T + L + FA ++ A++V D T RS+G+GFV G E A+
Sbjct: 196 IFVGDLAIDVTDAMLQDTFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 255
Query: 174 FDGSQIGGRTVKVNF--PEVPRG-------------GERAAMGPKLQNSY-QGFVDSPHK 217
+G R +++ P+ G G +A G Q S+ +G +++
Sbjct: 256 MNGVYCSSRPMRIGVATPKKTYGFQQQYSSQAVVLAGGHSANGAVAQGSHSEGDINNT-T 314
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
I+ G L + + LR F ++S K+ +G GFV F ++ + A+ +
Sbjct: 315 IFVGGLDSDTSDEDLRQPFLQFGEVVSVKIPV------GKGCGFVQFADRKNAEEAIQGL 368
Query: 278 NGVV 281
NG V
Sbjct: 369 NGTV 372
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L + L + F + G V S +I +G GFV + A+EAI+
Sbjct: 315 IFVGGLDSDTSDEDLRQPFLQFGEVVSVKIPV------GKGCGFVQFADRKNAEEAIQGL 368
Query: 175 DGSQIGGRTVKVNFPEVP 192
+G+ IG +TV++++ P
Sbjct: 369 NGTVIGKQTVRLSWGRSP 386
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
D ++ G+L + L + F ++SAKVI + TG+S G+GFV F + +
Sbjct: 97 DEIRTVWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRGTAEK 156
Query: 273 ALDAMNGVV 281
L NG +
Sbjct: 157 VLQNYNGTM 165
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 16/205 (7%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
VTE + ++ + ++ +E+ + +A LYVG+L S++ + L ++F+
Sbjct: 4 VTEKTAEQLGNLKIDDSQEQQTATSTPSSATTENSSASLYVGDLDPSVSEALLYDIFSPI 63
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
G+V+S + D +T S G+ +V E K+AI + + I GR ++ + +
Sbjct: 64 GSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKAIEKLNYTPIKGRLCRIMWSQ------ 117
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
P L+ I+ NL + ++ L D F +LS+K+ + TG+S
Sbjct: 118 ---RDPALRKK------GSANIFIKNLHSDIDNKALYDTFSVFGNILSSKIATDE-TGKS 167
Query: 257 RGFGFVTFETAEDLQSALDAMNGVV 281
+GFGFV FE + A+DA+NG++
Sbjct: 168 KGFGFVHFEDDTAAKEAIDALNGML 192
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 11/168 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A +++ NL + + +L + F+ G + S++I D T +S+GFGFV AKEAI
Sbjct: 127 SANIFIKNLHSDIDNKALYDTFSVFGNILSSKIATDE-TGKSKGFGFVHFEDDTAAKEAI 185
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ + V P + R ER + +L+ S F + IY N+ T +
Sbjct: 186 DALNGMLLNGQEIFVG-PHLSRK-ERDS---QLEESKANFTN----IYVKNINLETTDEE 236
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F +LSA + + G+ +GFGFV FE ED A++ +NG
Sbjct: 237 FTELFSKYGKVLSA-ALEKTEDGKLKGFGFVDFENHEDAAKAVEELNG 283
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVTMGSVEEAKEAIRL 173
+YV N+ T E+F++ G V SA + ++ D + +GFGFV + E+A +A+
Sbjct: 223 IYVKNINLETTDEEFTELFSKYGKVLSAAL--EKTEDGKLKGFGFVDFENHEDAAKAVEE 280
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGL 227
+GSQ + + V+ R ++ +L+ Y+ Y G NL +
Sbjct: 281 LNGSQFKDQELFVS-----RAQKKYERMQELKKQYEASRLEKMAKYQGVNLFIKNLDDSI 335
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ L++ F + S +V+ G+SRGFGFV F T E+ A+ N
Sbjct: 336 DDEKLKEEFAPYGNITSVRVM-RTENGKSRGFGFVCFSTPEEATKAITEKN 385
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E QE +++ EA E+ K + L++ NL S+ L E FA G +
Sbjct: 296 AQKKYERMQELKKQYEASRLEKMAKY----QGVNLFIKNLDDSIDDEKLKEEFAPYGNIT 351
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
S ++ +SRGFGFV + EEA +AI + + G+ + V
Sbjct: 352 SVRVMRTE-NGKSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 396
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 16/171 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A
Sbjct: 46 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 105
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + I G+ ++ + + P L+ + QG ++ NL + ++
Sbjct: 106 LEDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIKNLDAAIDNK 150
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 151 ALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGML 200
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 196
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + +Y NL ++ + R
Sbjct: 197 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----VYIKNLDQEISEEEFRQ 247
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV + T + Q+A+D MN
Sbjct: 248 MFE-KFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMN 290
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 85/222 (38%), Gaps = 66/222 (29%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ NL ++ ++F + G + SA + D+ +SRGFGFV + + A+ A+
Sbjct: 231 VYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQ-EGKSRGFGFVNYSTHDSAQAAVDEM 289
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ ++ G+ + V E+ + E A + + + YQG +Y NL
Sbjct: 290 NDKEVKGQKLYVGRAQKKHEREEELRKQYEAARL--EKASKYQGV-----NLYVKNLTDD 342
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFE------------------------------------ 250
+ + LR+ F + SAKV+ +
Sbjct: 343 IDDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKE 402
Query: 251 --------------RYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ G+S+GFGFV F + ++ A+ MN
Sbjct: 403 SGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMN 444
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 52/151 (34%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE ++ E ++ A+ + LYV NL + L E+FA GT+ SA+++
Sbjct: 305 QKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVM 364
Query: 146 YD--------------------------------------------------RVTDRSRG 155
D +V +S+G
Sbjct: 365 RDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQDKENKKSDKKVLGKSKG 424
Query: 156 FGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
FGFV S +EA +A+ + I G+ + V
Sbjct: 425 FGFVCFSSPDEASKAVTEMNQRMINGKPLYV 455
>gi|255646669|gb|ACU23808.1| unknown [Glycine max]
Length = 125
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 12/120 (10%)
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYA 220
M +E+ I +G + GRT++VNF P+ E + ++ HK++
Sbjct: 1 MSCIEDCNAVIENLNGKEFLGRTLRVNFSSKPKPKEPL------------YPETEHKLFV 48
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
GNL W +T++ L AFQ ++ A+V+++ TGRSRG+GFV + T ++++A+ A+N V
Sbjct: 49 GNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDV 108
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +S+T+ L + F E GTV A ++YD T RSRG+GFV + E + A+
Sbjct: 45 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAA 104
Query: 174 FDGSQIGGRTVKVNFPEVPR 193
+ ++ GR ++V+ + R
Sbjct: 105 LNDVELEGRAMRVSLAQGKR 124
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
AA+ + LYVG+L +T + L EVF G V S + D VT RS G+ +V +++
Sbjct: 77 AANFVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQD 136
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ ++ + + I G+ ++ + P L+ S G I+ NL
Sbjct: 137 AERSLDTLNYTVIKGQPCRIMW---------CHRDPSLRKSGNG------NIFVKNLDKN 181
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV + G S+G+GFV +E E +SA+D +NG++
Sbjct: 182 IDNKALYDTFSLFGNILSCKVAVDD-NGHSKGYGFVHYENEESARSAIDKVNGML 235
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 15/165 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL ++ + +L + F+ G + S ++ D S+G+GFV + E A+ AI
Sbjct: 173 IFVKNLDKNIDNKALYDTFSLFGNILSCKVAVDD-NGHSKGYGFVHYENEESARSAIDKV 231
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G IGG+TV V P + R K N Y + S W S+ LR+
Sbjct: 232 NGMLIGGKTVYVG-PFIRRAERDNLAEAKYTNVYIKNMPS---------AWEDESR-LRE 280
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + G +++ V+ R + R F F F + ++A++A+NG
Sbjct: 281 TFS-KFGSITSLVV--RKDPKGRLFAFCNFADHDSAKAAVEALNG 322
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LY+ N+ S+ L ++F G++ SA+++ D SR FGFV S EEA +A
Sbjct: 386 QGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDE-RGVSRCFGFVCFMSPEEATKA 444
Query: 171 IRLFDGSQIGGRTVKVNFPE 190
+ + G+ + V E
Sbjct: 445 VTEMHLKLVKGKPLYVGLAE 464
>gi|148226518|ref|NP_001081557.1| nucleolin [Xenopus laevis]
gi|295899|emb|CAA51460.1| nucleolin [Xenopus laevis]
Length = 705
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 18/163 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V NL YS T SL EVF +A + I + R++GF FV S+E+AKEA+
Sbjct: 468 LVVNNLSYSATEDSLREVFEKATS-----IRIPQNQGRAKGFAFVEFSSMEDAKEAMDSC 522
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ +++ GR++++ F + G S Q ++ L T + L++
Sbjct: 523 NNTEVEGRSIRLEFSQG-----GGPQGGGRGGSVQS-----KTLFVRGLSEDTTEETLKE 572
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
AF G ++A+++ +R TG S+GFGFV F +AED ++A +AM
Sbjct: 573 AFDGS---INARIVTDRDTGASKGFGFVDFSSAEDAKAAREAM 612
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 24/167 (14%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS-RGFGFVTMGSVEEAKEAIRL 173
L+V N+PYS ++ L E+F A +I D S +G +V + EA +A+
Sbjct: 378 LFVKNIPYSTSAEELQEIFENA-----KDIRIPTGNDGSNKGIAYVEFSTEAEANKALEE 432
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS--YQGFVDSPHKIYAGNLGWGLTSQG 231
G++I GR++ V+F G K QNS +G + NL + T
Sbjct: 433 KQGAEIEGRSLFVDF-----------TGEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDS 481
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
LR+ F+ + + + GR++GF FV F + ED + A+D+ N
Sbjct: 482 LREVFE-----KATSIRIPQNQGRAKGFAFVEFSSMEDAKEAMDSCN 523
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V L T +L E F G++ +A IV DR T S+GFGFV S E+AK A
Sbjct: 556 LFVRGLSEDTTEETLKEAFD--GSI-NARIVTDRDTGASKGFGFVDFSSAEDAKAAREAM 612
Query: 175 DGSQIGGRTVKVNFPEVPRG 194
+ +I G V ++F + P+G
Sbjct: 613 EDGEIDGNKVTLDFAK-PKG 631
>gi|213625217|gb|AAI70091.1| LOC397919 protein [Xenopus laevis]
Length = 704
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 18/163 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V NL YS T SL EVF +A + I + R++GF FV S+E+AKEA+
Sbjct: 467 LVVNNLSYSATEDSLREVFEKATS-----IRIPQNQGRAKGFAFVEFSSMEDAKEAMDSC 521
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ +++ GR++++ F + G S Q ++ L T + L++
Sbjct: 522 NNTEVEGRSIRLEFSQG-----GGPQGGGRGGSVQS-----KTLFVRGLSEDTTEETLKE 571
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
AF G ++A+++ +R TG S+GFGFV F +AED ++A +AM
Sbjct: 572 AFDGS---INARIVTDRDTGASKGFGFVDFSSAEDAKAAREAM 611
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 24/167 (14%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS-RGFGFVTMGSVEEAKEAIRL 173
L+V N+PYS ++ L E+F A +I D S +G +V + EA +A+
Sbjct: 377 LFVKNIPYSTSAEELQEIFENA-----KDIRIPTGNDGSNKGIAYVEFSTEAEANKALEE 431
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS--YQGFVDSPHKIYAGNLGWGLTSQG 231
G++I GR++ V+F G K QNS +G + NL + T
Sbjct: 432 KQGAEIEGRSLFVDF-----------TGEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDS 480
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
LR+ F+ + + + GR++GF FV F + ED + A+D+ N
Sbjct: 481 LREVFE-----KATSIRIPQNQGRAKGFAFVEFSSMEDAKEAMDSCN 522
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V L T +L E F G++ +A IV DR T S+GFGFV S E+AK A
Sbjct: 555 LFVRGLSEDTTEETLKEAFD--GSI-NARIVTDRDTGASKGFGFVDFSSAEDAKAAREAM 611
Query: 175 DGSQIGGRTVKVNFPEVPRG 194
+ +I G V ++F + P+G
Sbjct: 612 EDGEIDGNKVTLDFAK-PKG 630
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L S+T S L E+F++AG V S + D + RS G+ +V + +A A+ L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G+ ++V + R+ I+ NL + + L D
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSGSA---------------NIFIKNLDKAIDHKTLHD 145
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + G+S+GFGFV ++ E QSA+ ++NG++
Sbjct: 146 TFSAFGNILSCKVATDE-MGQSKGFGFVQYDKGEAAQSAIKSLNGML 191
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A +++ NL ++ +L + F+ G + S ++ D + +S+GFGFV E A+ AI
Sbjct: 126 SANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEM-GQSKGFGFVQYDKGEAAQSAI 184
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS-YQGFVDSP--HKIYAGNLGWGLT 228
+ +G I + V V GP L+ + VD + ++ NL T
Sbjct: 185 KSLNGMLINDKPVYV--------------GPFLRKQERENSVDKTKFNNVFVKNLSESTT 230
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L F G G +++ VI G+SR FGF+ F++ +D A++ +NG
Sbjct: 231 KEDLVKIF-GAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNG 280
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 15/171 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S T L ++F G + SA I+ + +SR FGF+ S ++A A+
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVG-MDGKSRCFGFINFKSPDDAARAVEEL 278
Query: 175 DGSQIG------GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+G +I GR K + E+ + YQG +Y NL +
Sbjct: 279 NGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGL-----NLYMKNLDDSIG 333
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + F + S K++ + G S+G GFV F T +Q L MNG
Sbjct: 334 DDQLCELFSNYGKITSCKIMRDA-NGVSKGSGFVAFSTLPFIQ--LTEMNG 381
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E E E E+ A+D + LY+ NL S+ L E+F+ G + S +I+
Sbjct: 294 QKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIM 353
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
D S+G GFV ++ + + +G I G+ + V F + R +R AM
Sbjct: 354 RD-ANGVSKGSGFVAFSTLPFIQ--LTEMNGKMISGKPLYVAFAQ--RKEDRKAM 403
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + + SRGFGFV FET E Q A++ MNG++
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRGFGFV + E A++AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E A +G + F + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-AELGARALE----FTN----IYVKNLPVDVDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ + +G SR FGFV FE E+ Q A+ MNG
Sbjct: 210 LFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 14/177 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +YV NLP + L ++F++ G + S +++ D + SR FGFV EEA++A
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLG 224
+ +G ++ GR + + V R E +++ YQG +Y NL
Sbjct: 248 VVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV-----NLYVKNLD 302
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG +
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL S+ L + F+ G + SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G +G + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIVGTKPLYVALAQ--RKEERKAI---LTNQY 382
>gi|241708466|ref|XP_002403282.1| spliceosome associated protein, putative [Ixodes scapularis]
gi|215505045|gb|EEC14539.1| spliceosome associated protein, putative [Ixodes scapularis]
Length = 408
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +YVG L ++ + L E+F +AG V + + DRVT +G+GFV E
Sbjct: 6 IAERNQDATIYVGGLDEKVSDTILWELFVQAGPVVNVHMPKDRVTGHHQGYGFVEFLGEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AI++ + ++ G+ ++VN +++Q +D I+ GNL
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN----------------KASAHQKNLDVGANIFIGNLDP 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG S+G+ F+ F + E +A++AMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFEASDAAIEAMNG 164
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V + + ++A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 119
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 120 DELNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDVAIDNKA 164
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ET E A+ +NG++
Sbjct: 165 LHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGML 213
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A +AI+
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAASQAIKHV 209
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K + F + IY N+ +T R
Sbjct: 210 NGMLLNEKKVYVGH-HIPKKDRQS----KFEEMKANFTN----IYVKNIQLDVTDDDFRA 260
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S+ + ++ TG+SRGFGFV F + ED A++ +N
Sbjct: 261 LFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVEELN 304
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 79/212 (37%), Gaps = 53/212 (25%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T +F + G V S+ + D+ T +SRGFGFV S E+A +A+
Sbjct: 244 IYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVEEL 303
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ + G+ + V R ++ +L+ SY+ Y G NL +
Sbjct: 304 NEKEFHGQNLYVG-----RAQKKHEREEELRRSYEAARQEKASKYQGVNLYIKNLDDEVD 358
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYT----------------------------------- 253
LR F + SAKV+ E
Sbjct: 359 DDKLRQLFSEFGPITSAKVMRETLAEGADEPEAKDAADAKENVKEDEEAAKTEGDEGDAK 418
Query: 254 -------GRSRGFGFVTFETAEDLQSALDAMN 278
G+S+GFGFV F +D A+ MN
Sbjct: 419 ADKKPKLGKSKGFGFVCFGNPDDATKAVAEMN 450
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +YV NL + L E+F++ G + S +++ D + SRGFGFV + EE
Sbjct: 185 ARAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDS-SGHSRGFGFVNFETHEE 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERA----AMGPKLQNSYQGFVDSPHKIYA 220
A++A+ +G ++ GR + V + V R E M N YQG +Y
Sbjct: 244 AQKAVVHMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL + + LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDSIDDEKLRKEFSPYGMITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ G + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEMIKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEASIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV + + SRGFGFV FET E Q A++ MNG++
Sbjct: 116 YDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQHAINTMNGML 162
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++ D SRGFGFV + E A+ AI
Sbjct: 101 IFIKNLEASIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQHAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + V V + R E +G + F + IY NL + QGL++
Sbjct: 159 NGMLLNDHKVFVGHFKSRRERE-VELGARAME----FTN----IYVKNLQADVDEQGLQE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ + +G SRGFGFV FET E+ Q A+ MNG
Sbjct: 210 LFSQFGKMLSVKVMRDS-SGHSRGFGFVNFETHEEAQKAVVHMNG 253
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL S+ L + F+ G + SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFSPYGMITSAKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G +G + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIVGTKPLYVALAQ--RKEERKAI---LTNQY 382
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 18/205 (8%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
+T+ + ++ E ++++++A E V S +A LYVG+L S++ + L ++F+
Sbjct: 4 ITDKTAEQLENLNIQDDQKQAATGSESQSVENS--SASLYVGDLEPSVSEAHLYDIFSPI 61
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
G+V+S + D +T S G+ +V E ++AI + + I GR ++ +
Sbjct: 62 GSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMW-------- 113
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
+ P L+ G I+ NL + ++ L D F +LS+K+ + G+S
Sbjct: 114 -SQRDPSLRKKGSG------NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKS 165
Query: 257 RGFGFVTFETAEDLQSALDAMNGVV 281
+GFGFV FE + A+DA+NG++
Sbjct: 166 KGFGFVHFEEEGAAKEAIDALNGML 190
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N+ T E+FA+ G + SA + D + +GFGFV E+A +A+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ S++ G + V + ER + L+ Y+ + Y G NL +
Sbjct: 280 NDSELNGEKLYVG--RAQKKNERMHV---LKKQYEAYRLEKMAKYQGVNLFVKNLDDSVD 334
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ L + F + SAKV+ G+S+GFGFV F T E+ A+ N
Sbjct: 335 DEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL + + +L + F+ G + S++I D +S+GFGFV AKEAI
Sbjct: 125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAI 183
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ + V P + R ER + + + Y +Y N+ T +
Sbjct: 184 DALNGMLLNGQEIYVA-PHLSR-KERDSQLEETKAHYTN-------LYVKNINSETTDEQ 234
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
++ F + G + + + + G+ +GFGFV +E ED A++A+N
Sbjct: 235 FQELF-AKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A + L+V NL S+ L E FA GT+ SA+++ +S+GFGFV + EEA
Sbjct: 317 AKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEA 375
Query: 168 KEAIRLFDGSQIGGRTVKV 186
+AI + + G+ + V
Sbjct: 376 TKAITEKNQQIVAGKPLYV 394
>gi|443717173|gb|ELU08367.1| hypothetical protein CAPTEDRAFT_163289 [Capitella teleta]
Length = 412
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 91/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +YVG L ++ S L E+F +AG V + + DR++ +G+GFV E
Sbjct: 6 IAERNQDATIYVGGLDDKVSESILWELFLQAGPVVNVHMPKDRISQAHQGYGFVEFMGEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A AIR+ + ++ G+ ++VN +++Q +D I+ GNL
Sbjct: 66 DADYAIRIMNMIKLYGKPIRVN----------------KASAHQKNLDVGANIFIGNLDP 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG S+GF F+ F + E SA++AMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGFAFINFASFETSDSAIEAMNG 164
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A +++GNL + L + F+ G + + +I+ D T S+GF F+ S E +
Sbjct: 97 DVGANIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGFAFINFASFETSD 156
Query: 169 EAIRLFDGSQIGGRTVKVN--FPEVPRGGERAAMGPKL--QNSYQGFVDSPHKIYA 220
AI +G + R + ++ F + +G + +L Q + VD PH+++A
Sbjct: 157 SAIEAMNGQYLCNRAISISYAFKKDSKGERHGSAAERLLAQQNPLTQVDRPHQLFA 212
>gi|347441280|emb|CCD34201.1| hypothetical protein [Botryotinia fuckeliana]
Length = 492
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 8/200 (4%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
P +++ E+E EA ++ + + A D ++ L+VGNL +++ L F E G ++ A
Sbjct: 211 PSKKRKAEDEPEASTKKSKTEETAEDNGSKNLFVGNLSWNIDDEWLYREFEEFGEISGAR 270
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
++ D+ T RS+GFG+V +A A+ G+ I GR V+F PR + A +
Sbjct: 271 VISDKATGRSKGFGYVEFVKSSDAAAALAAKKGALIDGREANVDF-STPR--DTTAPRER 327
Query: 204 LQNSYQGFVDSPH----KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF 259
N F D+ + ++ GNL + + +AF +++ ++ ++ TG +GF
Sbjct: 328 ANNRAAQFGDAKNPPSDTLFLGNLSFDADENVVGEAFGEHGTVVNVRLPTDQETGNPKGF 387
Query: 260 GFVTFETAEDLQSALDAMNG 279
G+VTF + ED +A DAM G
Sbjct: 388 GYVTFGSVEDATAAYDAMMG 407
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL + + + E F E GTV + + D+ T +GFG+VT GSVE+A A
Sbjct: 346 LFLGNLSFDADENVVGEAFGEHGTVVNVRLPTDQETGNPKGFGYVTFGSVEDATAAYDAM 405
Query: 175 DGSQIGGRTVKVNFPEVPR 193
G+ I GR V++++ PR
Sbjct: 406 MGADIAGRPVRLDY-ATPR 423
>gi|324512478|gb|ADY45169.1| Splicing factor 3B subunit 4 [Ascaris suum]
Length = 399
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 17/171 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
++ A +YVG L +T + L E+F ++G V S + DRVT+ +GFGFV E+A
Sbjct: 10 NQDATIYVGGLDEKVTDAILWELFVQSGPVVSVNMPKDRVTNSHQGFGFVEFMGEEDADY 69
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI++ + ++ G+ +KVN ++++ +D I+ GNL +
Sbjct: 70 AIKIMNMIKLYGKPIKVN----------------KASAHEKNMDVGANIFVGNLDPEVDE 113
Query: 230 QGLRDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L D F +L K++ + TG S+GF FV F + E SA++AM+G
Sbjct: 114 KLLFDTFSAFGVILQVPKIMRDAETGNSKGFAFVNFASFEASDSAIEAMSG 164
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASA-EIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A ++VGNL + L + F+ G + +I+ D T S+GF FV S E +
Sbjct: 97 DVGANIFVGNLDPEVDEKLLFDTFSAFGVILQVPKIMRDAETGNSKGFAFVNFASFEASD 156
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI G + R + V++
Sbjct: 157 SAIEAMSGQFLCNRAITVSY 176
>gi|449437591|ref|XP_004136575.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like
[Cucumis sativus]
gi|449501907|ref|XP_004161491.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like
[Cucumis sativus]
Length = 335
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 101 EEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
EE VA++D R L+V L ++ TS +L F+ G + ++YD+ T +SRG+GF+
Sbjct: 52 EEIKSVASADPVNRKLFVRGLAWNTTSETLCAAFSVHGEIEEGAVIYDKATGKSRGYGFI 111
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
T +E K A++ I GR N G ++ P L K+Y
Sbjct: 112 TYKHMESTKAALKA-PSKIIEGRMAVCNL--ACEGLSGSSTTPDLAQ---------RKLY 159
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
G L +TS+ L + F + V +++ T SRGFGFVT+ TAE + A+D
Sbjct: 160 IGGLSPDITSEVLLNFFGRYGDIEEGSVAYDKDTNESRGFGFVTYTTAEAAKKAID 215
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY+G L +TS L F G + + YD+ T+ SRGFGFVT + E AK+AI
Sbjct: 157 KLYIGGLSPDITSEVLLNFFGRYGDIEEGSVAYDKDTNESRGFGFVTYTTAEAAKKAIDD 216
Query: 174 FDGSQIGGRTVKVNF 188
D + GGR + V
Sbjct: 217 PDKT-FGGRNIIVKL 230
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ L W TS+ L AF + VI+++ TG+SRG+GF+T++ E ++AL A
Sbjct: 66 KLFVRGLAWNTTSETLCAAFSVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTKAALKA 125
Query: 277 MNGVV 281
+ ++
Sbjct: 126 PSKII 130
>gi|378733387|gb|EHY59846.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 503
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 106/199 (53%), Gaps = 6/199 (3%)
Query: 84 EPETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVAS 141
+P++ + + E++E ++ KVA D + L+VGNL +++ + L F E G ++
Sbjct: 227 KPKSAKRKAEDDE-TPAAKKSKVADVDTSKGPNLFVGNLSWNVDENWLRSEFEEFGELSG 285
Query: 142 AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMG 201
++ DR T RS+GFG+V +A +A G+++ GR + V+F + A
Sbjct: 286 VRLMTDRQTGRSKGFGYVEFVDAADAAKAYAAKQGAELDGRPLNVDFANARSNDNKPA-- 343
Query: 202 PKLQNSYQGFVDSP-HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFG 260
+ SY + P ++ GNL + T + + +AF ++ ++ +R TG +GFG
Sbjct: 344 DNRRKSYGDQLGEPTDTLFLGNLSFDCTQEDVSEAFAPHGTVMGIRLPTDRETGAPKGFG 403
Query: 261 FVTFETAEDLQSALDAMNG 279
+VTF + ++ ++AL+AM G
Sbjct: 404 YVTFGSVDEAKAALEAMQG 422
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL + T ++E FA GTV + DR T +GFG+VT GSV+EAK A+
Sbjct: 361 LFLGNLSFDCTQEDVSEAFAPHGTVMGIRLPTDRETGAPKGFGYVTFGSVDEAKAALEAM 420
Query: 175 DGSQIGGRTVKVNFPEV-PRGGERAA 199
G I R +++++ + P+ G+ A
Sbjct: 421 QGGYIKNRPIRLDYSQPRPQNGDSPA 446
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + + SRGFGFV FET E Q A++ MNG++
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRGFGFV + E A++AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E A +G + F + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-AELGARALE----FTN----IYVKNLPVDVDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ + +G SR FGFV FE E+ Q A+ MNG
Sbjct: 210 LFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 14/177 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +YV NLP + L ++F++ G + S +++ D + SR FGFV EEA++A
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLG 224
+ +G ++ GR + + V R E +++ YQG +Y NL
Sbjct: 248 VVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV-----NLYVKNLD 302
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG +
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL S+ L + F+ G + SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G +G + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIVGTKPLYVALAQ--RKEERKAI---LTNQY 382
>gi|50305631|ref|XP_452776.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641909|emb|CAH01627.1| KLLA0C12925p [Kluyveromyces lactis]
Length = 570
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 28/174 (16%)
Query: 101 EEEPKVAASD---EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ EPK +D + ++++G L + T L + F++ G VA +I+ D T RSRGFG
Sbjct: 171 QHEPKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFG 230
Query: 158 FVTM---GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDS 214
F+T SV+E + + DG I + +PR + D
Sbjct: 231 FLTFENASSVDEVVKTQHILDGKVIDPKRA------IPREEQ----------------DK 268
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
KI+ G +G + + + F ++ A+++ ++ TGRSRGFGF+T++T +
Sbjct: 269 TGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPD 322
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 6/169 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NLP + L ++F++ G + S +++ D + SRGFGFV EEA++A+
Sbjct: 193 IYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVMDM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQGL 232
+G Q+ GR + V + RG + + + +++ Q ++ +Y NL + + L
Sbjct: 252 NGMQVSGRLLYVGRAQ-KRGERQNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKL 310
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
R F + SAKV+ E G S+GFGFV F + E+ A+ MNG +
Sbjct: 311 RKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------------NVFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + + SRGFGFV FET E Q A+ MNG++
Sbjct: 116 YDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQQAISTMNGML 162
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 12/166 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRGFGFV + E A++AI
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAQQAISTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R ER A +L F + IY NL + +GL+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRR--EREA---ELGARATAFTN----IYVKNLPGHVDERGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F +LS KV+ + +G SRGFGFV FE E+ Q A+ MNG+
Sbjct: 210 LFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVMDMNGM 254
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL S+ L + F+ G + SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G IG + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIIGTKPLYVALAQ--RKEERKAI---LTNQY 382
>gi|389595349|ref|XP_003722897.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
gi|323364125|emb|CBZ13132.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
Length = 560
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+P++ + A +YVG+L ++ L E+F GT+ + + D +T RS G+G+V
Sbjct: 14 HQPQMDKPMQIASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNF 73
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ + A++AI + ++G + V++ + + P L+ S G ++
Sbjct: 74 DNHDSAEKAIESMNFKRVGDKCVRLMWQQ---------RDPALRYSGNG------NVFVK 118
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL + S+ L D F +LS KV+ + G+SRG+GFV F+ + A+ MNG
Sbjct: 119 NLEKDVDSKSLHDIFTKFGSILSCKVM-QDEEGKSRGYGFVHFKDETSAKDAIVKMNG 175
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 4/165 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ + ++ + + FA+ G + SA D+ R F F ++A +A+
Sbjct: 209 VYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDK---SGRVFAFCNFEKHDDAVKAVEAM 265
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
I G T V R R+ L+ Y + +Y N T L +
Sbjct: 266 HDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLE 325
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F+ + S +V+ +G SRGFGFV+F A++ +AL MNG
Sbjct: 326 LFKEYGEVKSCRVMVSE-SGVSRGFGFVSFSNADEANAALREMNG 369
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N T + L E+F E G V S ++ + SRGFGFV+ + +EA A+R
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSE-SGVSRGFGFVSFSNADEANAALREM 367
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAM 200
+G + G+ + VN + R +R M
Sbjct: 368 NGRMLNGKPLIVNIAQ--RRDQRYTM 391
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 22/169 (13%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + S SL ++F + G++ S +++ D +SRG+GFV AK+AI
Sbjct: 115 VFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDE-EGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 175 DGSQIGGRTVK-----VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
+G+ K NF + R AA+ N +Y + +
Sbjct: 174 NGAADHASEDKKALYVANF--IRRNARLAALVANFTN-----------VYIKQVLPTVNK 220
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ F G+ SA ++ +GR F F FE +D A++AM+
Sbjct: 221 DVIEKFFAKFGGITSAAACKDK-SGRV--FAFCNFEKHDDAVKAVEAMH 266
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 18/205 (8%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
+T+ + ++ E ++++++A E V S +A LYVG+L S++ + L ++F+
Sbjct: 4 ITDKTAEQLENLNIQDDQKQAATGSESQSVENS--SASLYVGDLEPSVSEAHLYDIFSPI 61
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
G+V+S + D +T S G+ +V E ++AI + + I GR ++ +
Sbjct: 62 GSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMW-------- 113
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
+ P L+ G I+ NL + ++ L D F +LS+K+ + G+S
Sbjct: 114 -SQRDPSLRKKGSG------NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKS 165
Query: 257 RGFGFVTFETAEDLQSALDAMNGVV 281
+GFGFV FE + A+DA+NG++
Sbjct: 166 KGFGFVHFEEEGAAKEAIDALNGML 190
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N+ T E+FA+ G + SA + D + +GFGFV E+A +A+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ S++ G + V + ER + L+ Y+ + Y G NL +
Sbjct: 280 NDSELNGEKLYVG--RAQKKNERMHV---LKKQYEAYRLEKMAKYQGVNLFVKNLDDSVD 334
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ L + F + SAKV+ G+S+GFGFV F T E+ A+ N
Sbjct: 335 DEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL + + +L + F+ G + S++I D +S+GFGFV AKEAI
Sbjct: 125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAI 183
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ + V P + R ER + + + Y +Y N+ T +
Sbjct: 184 DALNGMLLNGQEIYVA-PHLSR-KERDSQLEETKAHYTN-------LYVKNINSETTDEQ 234
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
++ F + G + + + + G+ +GFGFV +E ED A++A+N
Sbjct: 235 FQELF-AKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A + L+V NL S+ L E FA GT+ SA+++ +S+GFGFV + EEA
Sbjct: 317 AKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEA 375
Query: 168 KEAIRLFDGSQIGGRTVKV 186
+AI + + G+ + V
Sbjct: 376 TKAITEKNQQIVAGKPLYV 394
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + + SRGFGFV FET E Q A++ MNG++
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRGFGFV + E A++AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E A +G + F + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-AELGARALE----FTN----IYVKNLPVDVDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ + +G SR FGFV FE E+ Q A+ MNG
Sbjct: 210 LFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 14/177 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +YV NLP + L ++F++ G + S +++ D + SR FGFV EEA++A
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLG 224
+ +G ++ GR + + V R E +++ YQG +Y NL
Sbjct: 248 VVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV-----NLYVKNLD 302
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG +
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL S+ L + F+ G + SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G +G + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIVGTKPLYVALAQ--RKEERKAI---LTNQY 382
>gi|169626491|ref|XP_001806645.1| hypothetical protein SNOG_16535 [Phaeosphaeria nodorum SN15]
gi|160706106|gb|EAT76075.2| hypothetical protein SNOG_16535 [Phaeosphaeria nodorum SN15]
Length = 321
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 9/151 (5%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+GNL Y +T+ L +VF+ G VAS +IVYD SRGFG+V S+++A+ AI
Sbjct: 131 LYIGNLYYEVTTEQLQKVFSRFGEVASVKIVYDN-RGMSRGFGYVEFKSIDDAQTAIDNL 189
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK-IYAGNLGWGLTSQGLR 233
D GR + V + +R PK + P K ++ GN+ + ++ + L
Sbjct: 190 DMQVFEGRNLVVQYHRAKSDSDR----PKREFPPANL---PSKTLFIGNMSFEMSDKDLN 242
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
D F+ + +V +R TG+ RGF F
Sbjct: 243 DLFRDIRNVNDVRVAIDRRTGQPRGFAHADF 273
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GN+ + M+ L ++F + V + DR T + RGF V A +A +
Sbjct: 227 LFIGNMSFEMSDKDLNDLFRDIRNVNDVRVAIDRRTGQPRGFAHADFLDVASATKAKEIL 286
Query: 175 DGSQIGGRTVKVNFP----EVPRGGERAAMGPK 203
I GR ++V+F E PRG R G +
Sbjct: 287 SAKTIYGRELRVDFSRSANENPRGNTRRDSGTR 319
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 215 PHK-IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
PH +Y GNL + +T++ L+ F + S K++++ G SRGFG+V F++ +D Q+A
Sbjct: 127 PHNTLYIGNLYYEVTTEQLQKVFSRFGEVASVKIVYDNR-GMSRGFGYVEFKSIDDAQTA 185
Query: 274 LDAMNGVV 281
+D ++ V
Sbjct: 186 IDNLDMQV 193
>gi|30682335|ref|NP_849641.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332190644|gb|AEE28765.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 306
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
+DE L++G+L Y M + L FA G + SA+++ ++ T + G+GF+ S A+
Sbjct: 58 ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAE 117
Query: 169 EAIRLFDGSQIGG---RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLG 224
++ F+ + I + ++N+ + G +R DSP + I+ G+L
Sbjct: 118 RVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRD--------------DSPDYTIFVGDLA 163
Query: 225 WGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T L + F+ P + AKV+ +R TGR++G+GFV F + A+ MNGV
Sbjct: 164 ADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGV 220
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DRVT R++G+GFV E A+
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK--LQNSYQGFV--DSPHK--IYAGNLGWGL 227
+G R +++ P ++ G + Q+S G + P+ ++ G L +
Sbjct: 217 MNGVPCSTRPMRIG----PAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASV 272
Query: 228 TSQGLRDAF 236
T L++ F
Sbjct: 273 TDDHLKNVF 281
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 17/181 (9%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+E P+ + L V LP ++T L ++F++ G V S +++ D+ + S G+GF
Sbjct: 10 DENPGPQNPETKAKTNLIVNYLPQTLTEEGLKQLFSQFGVVLSCKLIKDKSSGISLGYGF 69
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
V GS EEA+ AI+ +G+ + +T+KV++ +++ K N +
Sbjct: 70 VNYGSAEEAEHAIQKMNGTTLESKTLKVSY------ARPSSVAIKNAN-----------V 112
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL L+ L FQ ++++KV+ + TG RG GFV F+ + A+ A+N
Sbjct: 113 YVANLPPQLSLTELDALFQPYGTIITSKVLTDEDTGAGRGVGFVRFDKYTQAEVAIAALN 172
Query: 279 G 279
G
Sbjct: 173 G 173
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YV NLP ++ + L +F GT+ +++++ D T RG GFV +A+ AI
Sbjct: 110 ANVYVANLPPQLSLTELDALFQPYGTIITSKVLTDEDTGAGRGVGFVRFDKYTQAEVAIA 169
Query: 173 LFDGSQIGGRT--VKVNFPEVPR 193
+G Q+ G T + V F P+
Sbjct: 170 ALNGKQLVGGTQPLLVKFANPPK 192
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + ++V NLP + L ++F+ G + S ++ D + + +GFV M S E+A
Sbjct: 309 DPSYCVFVYNLPETCQDFLLYQLFSPFGAITSVNVIRDLKSGLCKRYGFVNMKSYEDACS 368
Query: 170 AIRLFDGSQIGGRTVKVNF 188
AI +G G+T++V+F
Sbjct: 369 AIMTLNGYVHDGKTLQVSF 387
>gi|222622445|gb|EEE56577.1| hypothetical protein OsJ_05928 [Oryza sativa Japonica Group]
Length = 510
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
++ + D + +++VG + + T S ++ F + G + + I+ D+ T RGFGFVT
Sbjct: 168 DDGRAPGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTF 227
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ L D I GRTV+V VPR + GPK + KI+ G
Sbjct: 228 SDPSVIDKV--LEDEHVIDGRTVEVKR-TVPREEMSSKDGPKTR-----------KIFVG 273
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
L LT LR+ F ++ +++ + TGRSRGFGFVTFE+ + ++ +
Sbjct: 274 GLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVI 326
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG LP S+T L E F+ G + +I+ D T RSRGFGFVT S + + I
Sbjct: 269 KIFVGGLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISE 328
Query: 174 FDGSQIGGRTVKVNFPEVPRGG 195
+GG+ V++ E + G
Sbjct: 329 GRMRDLGGKQVEIKKAEPKKHG 350
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
DS KI+ G + W T + F+ + + ++ +++T RGFGFVTF +
Sbjct: 176 DSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDK 235
Query: 273 ALD 275
L+
Sbjct: 236 VLE 238
>gi|357140379|ref|XP_003571746.1| PREDICTED: uncharacterized protein LOC100831046 isoform 1
[Brachypodium distachyon]
Length = 403
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++VG + + T + ++ F + G + + I+ D+ T RGFGFVT +
Sbjct: 64 SGKIFVGGVAWETTEETFSKHFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKV- 122
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
L D I GRTV+V VPR + GPK + KI+ G L L+
Sbjct: 123 -LEDEHNIDGRTVEVK-RTVPREEMSSKDGPKTR-----------KIFVGGLPASLSEDD 169
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
LRD F ++ +++ + TGRSRGFGFVTFE+ + ++ +
Sbjct: 170 LRDHFSSYGKVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVI 212
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 82 QDEPETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTV 139
+DE + E + V EE +++ D + +++VG LP S++ L + F+ G V
Sbjct: 124 EDEHNIDGRTVEVKRTVPREE---MSSKDGPKTRKIFVGGLPASLSEDDLRDHFSSYGKV 180
Query: 140 ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR-GGERA 198
+I+ D T RSRGFGFVT S + + I +GG+ V++ E + GG+ +
Sbjct: 181 VEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHS 240
Query: 199 AMG 201
+ G
Sbjct: 241 SNG 243
>gi|255550690|ref|XP_002516394.1| spliceosome associated protein, putative [Ricinus communis]
gi|223544492|gb|EEF46011.1| spliceosome associated protein, putative [Ricinus communis]
Length = 376
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 19/175 (10%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A ++ A YVGNL ++ L E+F +AG V + + DRVT+ +G+GFV S E+
Sbjct: 19 AERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A AI++ + ++ G+ ++VN +A+ K +D ++ GNL
Sbjct: 79 ADYAIKIMNMIKLFGKPIRVN---------KASQDKK-------SLDVGANLFIGNLDPD 122
Query: 227 LTSQGLRDAFQGQPGLL--SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F G++ + K++ + TG SRGFGF+++++ + +A++AMNG
Sbjct: 123 VDEKLLHDTFSAF-GVIVTNPKIMRDPETGNSRGFGFISYDSFDASDAAIEAMNG 176
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L++GNL + L + F+ G V + +I+ D T SRGFGF++ S + +
Sbjct: 109 DVGANLFIGNLDPDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFDASD 168
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI +G + R + V++
Sbjct: 169 AAIEAMNGQYLCNRQITVSY 188
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D T +SRGFGF++ E+
Sbjct: 185 AKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTD-PTGKSRGFGFISYEKHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA--------MGPKLQNSYQGFVDSPHKI 218
A +A+ +G+++ G+TV V + ER A + + + YQG +
Sbjct: 244 ANKAVEDMNGTELNGKTVFVG--RAQKKMERQAELKRKFEMLKQERISRYQGV-----NL 296
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL + + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MN
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 279 GVV 281
G +
Sbjct: 355 GRI 357
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVVKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + S+G+ FV FET + A++ MNG++
Sbjct: 116 YDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGML 162
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + + A AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGAKAKEFTN----VYIKNFGDDMNDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + TG+SRGFGF+++E ED A++ MNG
Sbjct: 210 LFDKYGKTLSVKVMTDP-TGKSRGFGFISYEKHEDANKAVEDMNG 253
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G +G + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 382
>gi|384247365|gb|EIE20852.1| hypothetical protein COCSUDRAFT_4708, partial [Coccomyxa
subellipsoidea C-169]
Length = 264
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
+++A LYVGNL + + L ++F+ GTV+ IV DR T S G FV + A
Sbjct: 1 NEDAKALYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAA 60
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
A++ +G + + V++ + A K +N+ S I+ GNL +
Sbjct: 61 IALKTINGRILYNKEVRIQW---------AFQKEKTENTA-----SHSHIFVGNLSGDVA 106
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L AFQ A+V+++ TGRS+GFGFV+F T E + AL M+G
Sbjct: 107 DPVLLQAFQHLGECSDARVMWDHSTGRSKGFGFVSFRTKEAAEKALAEMDG 157
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+ ++VGNL + L + F G + A +++D T RS+GFGFV+ + E A++A+
Sbjct: 94 SHIFVGNLSGDVADPVLLQAFQHLGECSDARVMWDHSTGRSKGFGFVSFRTKEAAEKALA 153
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD----SPHKIYAGNLGWGLT 228
DG+Q+G ++ + A G + VD + +Y GNL +
Sbjct: 154 EMDGAQVGQWKIRCGWAHHK---TEAVTGLDIDT-----VDRADPANTNVYVGNLPTEVM 205
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR AF + K + G+GFVT+ A+ MNG
Sbjct: 206 EEDLRAAFGAYGEITGLKPCHK------GGYGFVTYRDHSAAVQAIVGMNG 250
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A+S A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ +++ + + P L+ S G ++ NL
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ E GRS+GFGFV F + E+ A+ MNG +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRI 162
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S +++ + RS+GFGFV S EEA +A+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G +G + + V + R ER A L N Y
Sbjct: 159 NGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 187
>gi|227204263|dbj|BAH56983.1| AT1G11650 [Arabidopsis thaliana]
Length = 271
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
+DE L++G+L Y M + L FA G + SA+++ ++ T + G+GF+ S A+
Sbjct: 58 ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAE 117
Query: 169 EAIRLFDGSQIGG---RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLG 224
++ F+ + I + ++N+ + G +R DSP + I+ G+L
Sbjct: 118 RVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRD--------------DSPDYTIFVGDLA 163
Query: 225 WGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T L + F+ P + AKV+ +R TGR++G+GFV F + A+ MNGV
Sbjct: 164 ADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGV 220
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DRVT R++G+GFV E A+
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 174 FDGSQIGGRTVKV 186
+G R +++
Sbjct: 217 MNGVPCSTRPMRI 229
>gi|388510586|gb|AFK43359.1| unknown [Lotus japonicus]
Length = 305
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 21/190 (11%)
Query: 87 TEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEI-V 145
T Q+++ EE EE RL N+P++ T + +F GTV E+ +
Sbjct: 85 TTQQQQTEEATTEE---------FSTTRLVAQNVPWTSTPEDVRSLFERYGTVLEVELSM 135
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ 205
Y++ RSRG FV M S EEA EA+ + + GR +K+N+ R ++ A P +Q
Sbjct: 136 YNKT--RSRGLAFVEMSSPEEALEALNKLESYEFEGRVLKLNY---ARPKKKKAPPPVVQ 190
Query: 206 NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTF 264
F ++ NL + TS+ LR+ F G ++SA+V+F +S G+GFV+F
Sbjct: 191 RKPVTF-----NLFVANLSYEATSKDLREFFDSGSSQVVSAEVVFHEDPRKSTGYGFVSF 245
Query: 265 ETAEDLQSAL 274
++ ++ +AL
Sbjct: 246 KSKKEANAAL 255
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
L+V NL Y TS L E F + V SAE+V+ +S G+GFV+ S +EA A+
Sbjct: 198 LFVANLSYEATSKDLREFFDSGSSQVVSAEVVFHEDPRKSTGYGFVSFKSKKEANAALSE 257
Query: 174 FDGSQIGGRTVKV 186
F GR+++V
Sbjct: 258 FQEKTFMGRSLRV 270
>gi|339899318|ref|XP_001469326.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|398023903|ref|XP_003865113.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
gi|321398770|emb|CAM72432.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|322503349|emb|CBZ38434.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
Length = 560
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+P++ + A +YVG+L ++ L E+F GT+ + + D +T RS G+G+V
Sbjct: 14 HQPQMDKPMQIASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNF 73
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ + A++AI + ++G + V++ + + P L+ S G ++
Sbjct: 74 DNHDSAEKAIESMNFKRVGDKCVRLMWQQ---------RDPALRYSGNG------NVFVK 118
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL + S+ L D F +LS KV+ + G+SRG+GFV F+ + A+ MNG
Sbjct: 119 NLEKDVDSKSLHDIFTKFGSILSCKVM-QDEEGKSRGYGFVHFKDETSAKDAIVKMNG 175
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 4/165 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ + ++ + + FA+ G + SA D+ R F F ++A +A+
Sbjct: 209 VYIKQVLPTVNKEVIEKFFAKFGGITSAAACKDK---SGRVFAFCNFEKHDDAVKAVEAM 265
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
I G T V R R+ L+ Y + +Y N T L +
Sbjct: 266 HDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLE 325
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F+ + S +V+ +G SRGFGFV+F A++ +AL MNG
Sbjct: 326 LFKEYGEVKSCRVMVSE-SGASRGFGFVSFSNADEANAALREMNG 369
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N T + L E+F E G V S ++ + SRGFGFV+ + +EA A+R
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSE-SGASRGFGFVSFSNADEANAALREM 367
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAM 200
+G + G+ + VN + R +R M
Sbjct: 368 NGRMLNGKPLIVNIAQ--RRDQRYTM 391
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + S SL ++F + G++ S +++ D +SRG+GFV AK+AI
Sbjct: 115 VFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDE-EGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 175 DGSQIGGRTVK-----VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
+G+ K NF + R AA+ N +Y + +
Sbjct: 174 NGAADHASEDKKALYVANF--IRRNARLAALVANFTN-----------VYIKQVLPTVNK 220
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + F G+ SA ++ +GR F F FE +D A++AM+
Sbjct: 221 EVIEKFFAKFGGITSAAACKDK-SGRV--FAFCNFEKHDDAVKAVEAMH 266
>gi|240277045|gb|EER40555.1| splicing factor 3b subunit 4 [Ajellomyces capsulatus H143]
Length = 247
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D+ A +Y+GNL +T S + E+ +AG + + + DRVT +G+GFV S E+A+
Sbjct: 10 DKEATVYIGNLDERITDSLVWELMLQAGRIVNVHLPKDRVTQTHQGYGFVEFISEEDAEY 69
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
A R+ + ++ G+ ++VN K Q V+ +++ GNL +T
Sbjct: 70 AARIMNQVRLYGKPIRVN---------------KASADKQKMVEVGAELFVGNLDPMVTE 114
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q L D F L+SA I S+G+GFV+F E A+ MNG
Sbjct: 115 QVLYDTFSRFGSLISAPKIARDDANLSKGYGFVSFSNFEASDDAIANMNG 164
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A L+VGNL +T L + F+ G++ SA + + S+G+GFV+ + E + +AI
Sbjct: 100 GAELFVGNLDPMVTEQVLYDTFSRFGSLISAPKIARDDANLSKGYGFVSFSNFEASDDAI 159
Query: 172 RLFDGSQIGGRTVKVNF 188
+G + + V V +
Sbjct: 160 ANMNGQYLMNKEVSVQY 176
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 18/205 (8%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
+T+ + ++ E ++++++A E V S +A LYVG+L S++ + L ++F+
Sbjct: 4 ITDKTAEQLENLNIQDDQKQAATGSESQSVENS--SASLYVGDLEPSVSEAHLYDIFSPI 61
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
G+V+S + D +T S G+ +V E ++AI + + I GR ++ +
Sbjct: 62 GSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMW-------- 113
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
+ P L+ G I+ NL + ++ L D F +LS+K+ + G+S
Sbjct: 114 -SQRDPSLRKKGSG------NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKS 165
Query: 257 RGFGFVTFETAEDLQSALDAMNGVV 281
+GFGFV FE + A+DA+NG++
Sbjct: 166 KGFGFVHFEEEGAAKEAIDALNGML 190
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N+ T E+FA+ G + SA + D + +GFGFV E+A +A+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ S++ G + V + ER + L+ Y+ + Y G NL +
Sbjct: 280 NDSELNGEKLYVG--RAQKKNERMHV---LKKQYEAYRLEKMAKYQGVNLFVKNLDDSVD 334
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ L + F + SAKV+ G+S+GFGFV F T E+ A+ N
Sbjct: 335 DEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL + + +L + F+ G + S++I D +S+GFGFV AKEAI
Sbjct: 125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAI 183
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ + V P + R ER + + + Y +Y N+ T +
Sbjct: 184 DALNGMLLNGQEIYVA-PHLSR-KERDSQLEETKAHYTN-------LYVKNINSETTDEQ 234
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
++ F + G + + + + G+ +GFGFV +E ED A++A+N
Sbjct: 235 FQELF-AKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A + L+V NL S+ L E FA GT+ SA+++ +S+GFGFV + EEA
Sbjct: 317 AKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEA 375
Query: 168 KEAIRLFDGSQIGGRTVKV 186
+AI + + G+ + V
Sbjct: 376 TKAITEKNQQIVAGKPLYV 394
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 18/205 (8%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
+T+ + ++ E ++++++A E V S +A LYVG+L S++ + L ++F+
Sbjct: 4 ITDKTAEQLENLNIQDDQKQAATGSESQSVENS--SASLYVGDLEPSVSEAHLYDIFSPI 61
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
G+V+S + D +T S G+ +V E ++AI + + I GR ++ +
Sbjct: 62 GSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMW-------- 113
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
+ P L+ G I+ NL + ++ L D F +LS+K+ + G+S
Sbjct: 114 -SQRDPSLRKKGSG------NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKS 165
Query: 257 RGFGFVTFETAEDLQSALDAMNGVV 281
+GFGFV FE + A+DA+NG++
Sbjct: 166 KGFGFVHFEEEGAAKEAIDALNGML 190
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N+ T E+FA+ G + SA + D + +GFGFV E+A +A+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ S++ G + V + ER + L+ Y+ + Y G NL +
Sbjct: 280 NDSELNGEKLYVG--RAQKKNERMHV---LKKQYEAYRLEKMAKYQGVNLFVKNLDDSVD 334
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ L + F + SAKV+ G+S+GFGFV F T E+ A+ N
Sbjct: 335 DEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL + + +L + F+ G + S++I D +S+GFGFV AKEAI
Sbjct: 125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAI 183
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ + V P + R ER + + + Y +Y N+ T +
Sbjct: 184 DALNGMLLNGQEIYVA-PHLSR-KERDSQLEETKAHYTN-------LYVKNINSETTDEQ 234
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
++ F + G + + + + G+ +GFGFV +E ED A++A+N
Sbjct: 235 FQELF-AKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A + L+V NL S+ L E FA GT+ SA+++ +S+GFGFV + EEA
Sbjct: 317 AKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEA 375
Query: 168 KEAIRLFDGSQIGGRTVKV 186
+AI + + G+ + V
Sbjct: 376 TKAITEKNQQIVAGKPLYV 394
>gi|83773473|dbj|BAE63600.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 440
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 8/184 (4%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
EEP AS A L+VGNL +++ + L F E G ++ I+ +R T RSRGFG+V
Sbjct: 187 EEPAAGAS---ANLFVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEY 243
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPE-VPRGGERAAMGPKLQNSYQGFVD--SPHK- 217
+ +A +A ++I GR + +++ P E+ + Q + F D SP
Sbjct: 244 TNAVDAAKAFEAKRDTEIDGRKINLDYATGRPANREQGGFQDRAQARARSFGDQASPESD 303
Query: 218 -IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
++ GN+ + L + F + +L ++ + +GR +GFG+V F + E+ + A +
Sbjct: 304 TLFVGNIPFSANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQFSSVEEAREAFNE 363
Query: 277 MNGV 280
+NG
Sbjct: 364 LNGA 367
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
AS E+ L+VGN+P+S SL EVF + G++ + D + R +GFG+V SVEEA
Sbjct: 298 ASPESDTLFVGNIPFSANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQFSSVEEA 357
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPR 193
+EA +G++I GR V+++F PR
Sbjct: 358 REAFNELNGAEIDGRPVRLDF-STPR 382
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG L ++T + L +VF+ G ++S + D VT S G+ +V E K+AI+
Sbjct: 50 ASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQ 109
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ ++I GR ++ + E P ++ G I+ NL + ++ L
Sbjct: 110 ELNYAEINGRPCRIMWSE---------RDPAIRKKGSG------NIFIKNLHPAIDNKAL 154
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ F +LS KV + G SRGFGFV F+ D + A++A+NG++
Sbjct: 155 HETFSTFGEVLSCKVALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGML 202
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL ++ + +L E F+ G V S ++ D SRGFGFV +AK+AI
Sbjct: 137 SGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDE-NGNSRGFGFVHFKEESDAKDAI 195
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G V V VP+ +R + KL+ + F + IY N+ T +
Sbjct: 196 EAVNGMLMNGLEVYVAM-HVPK-KDRIS---KLEEAKANFTN----IYVKNIDVETTDEE 246
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F Q G + + + + G+ +GFGFV F A++ +NG
Sbjct: 247 FEQLF-SQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNG 293
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ T ++F++ G + SA + D + +GFGFV A +A+
Sbjct: 233 IYVKNIDVETTDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVEEL 291
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+G + + + V R ++ +L+ Y+ + ++ K ++ NL +
Sbjct: 292 NGKEFKSQALYVG-----RAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSID 346
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ L++ F + SA+V+ ++ G S+GFGFV F + E+ A+ N
Sbjct: 347 DEKLKEEFAPYGTITSARVMRDQ-EGNSKGFGFVCFSSPEEATKAMTEKN 395
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ L++ NL S+ L E FA GT+ SA ++ D+ + S+GFGFV S EEA +A
Sbjct: 332 QGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGN-SKGFGFVCFSSPEEATKA 390
Query: 171 IRLFDGSQIGGRTVKV 186
+ + + G+ + V
Sbjct: 391 MTEKNQQIVAGKPLYV 406
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A+
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I G+ ++ + + P L+ + QG ++ NL + ++
Sbjct: 114 EDLNYTLIKGKPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAIDNKA 158
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG++
Sbjct: 159 LHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAATNAIKHVNGML 207
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAATNAIKHV 203
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + +Y NL ++++ R+
Sbjct: 204 NGMLLNEKKVFV--------GHHIAKKDR-QSKFEEMKANFTNVYVKNLDTEVSNEEFRE 254
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + TG+SRGFGFV F E +A++ +N
Sbjct: 255 LFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAAAVEELN 298
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 80/222 (36%), Gaps = 64/222 (28%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL +++ E+F + G + SA I D T +SRGFGFV E A A+
Sbjct: 238 VYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAAAVEEL 297
Query: 175 DGSQIGGRTVKVNFPEVP-------RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ + G+ + V + R AA K + YQG +Y NL +
Sbjct: 298 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKA-SKYQGV-----NLYVKNLTDDI 351
Query: 228 TSQGLRDAF---------------QGQPGLLS---------------------------- 244
+ LRD F G PG S
Sbjct: 352 DDEKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADK 411
Query: 245 --------AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+K E+ G+S+GFGFV F ++ A+ MN
Sbjct: 412 SDKVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMN 453
>gi|388578824|gb|EIM19158.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 430
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 90/184 (48%), Gaps = 18/184 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D +++VG L +++ L F + G V +A + DR + RSRGFG+V S E A +
Sbjct: 202 DNTPQIFVGQLSWNIDDDWLKSEFEQLGPVKTARVQLDRQSGRSRGFGYVEFESHELAVK 261
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF----VDSPHKIYAGNLGW 225
A+ F G +I GR V+V+ VPR P + + F D + ++ GNL +
Sbjct: 262 AMDQFAGKEIDGRPVRVDL-SVPR-------APNPEKRAKSFGDQRSDPSNTLFIGNLSF 313
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG------ 279
+ + F + S +V +R TG +GFG+V+F + ++A+D G
Sbjct: 314 NTNEDRVWEFFGEFGSVESVRVPTDRETGAPKGFGYVSFADVDTAKAAIDGAAGSELDGR 373
Query: 280 VVRL 283
V+RL
Sbjct: 374 VIRL 377
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SD + L++GNL ++ + E F E G+V S + DR T +GFG+V+ V+ AK
Sbjct: 300 SDPSNTLFIGNLSFNTNEDRVWEFFGEFGSVESVRVPTDRETGAPKGFGYVSFADVDTAK 359
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI GS++ GR ++++F
Sbjct: 360 AAIDGAAGSELDGRVIRLDF 379
>gi|297830144|ref|XP_002882954.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
gi|297328794|gb|EFH59213.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
Length = 406
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 10/185 (5%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ ++E ++ + E +YV NL ++T L +F++ G V+S ++ D + RSRG G
Sbjct: 51 INKDERAAMSWNQEFTNVYVENLIENVTEDILHRLFSQYGIVSSVVVMRDGM-GRSRGLG 109
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH- 216
FV +E AK+A+ G Q+G +T+ V + R ER M Q+ + P+
Sbjct: 110 FVNFCHLENAKKAVEFLCGRQLGSKTLFVG--KALRKDERMEMLK--QHFRDNSIAKPNM 165
Query: 217 ---KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
+Y NL + LR+ F ++SAKV+ GRS+GFGFV F E+ + A
Sbjct: 166 GWSNMYVKNLSESMNDTRLREIFGRYGQIVSAKVM-RHENGRSKGFGFVCFSNREESKQA 224
Query: 274 LDAMN 278
+N
Sbjct: 225 KRYLN 229
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 23/200 (11%)
Query: 82 QDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS 141
QDEP+ + A E E KV S +A LYVG L S++ + L ++F+ G+V+S
Sbjct: 18 QDEPQ-----QNVAPASNEPESQKVETS--SASLYVGELDPSVSEALLYDIFSPIGSVSS 70
Query: 142 AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMG 201
+ D +T S G+ +V E K AI + + I G ++ + +
Sbjct: 71 IRVCRDAITKTSLGYAYVNFNDHEAGKTAIEKLNYAPIKGVPCRIMW---------SQRD 121
Query: 202 PKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGF 261
P ++ G I+ NL + ++ L D F +LS K+ + G SRGFGF
Sbjct: 122 PSMRKKGSG------NIFIKNLHPDIDNKALHDTFSVFGNILSCKIATDE-AGNSRGFGF 174
Query: 262 VTFETAEDLQSALDAMNGVV 281
V FE E + A+DA+NG++
Sbjct: 175 VHFEDDEAAKEAIDAINGML 194
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL + + +L + F+ G + S +I D + SRGFGFV E AKEAI
Sbjct: 129 SGNIFIKNLHPDIDNKALHDTFSVFGNILSCKIATDEAGN-SRGFGFVHFEDDEAAKEAI 187
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ V V + + KL + F + +Y N+ +
Sbjct: 188 DAINGMLLNGQEVY-----VAQHVSKKDRQSKLDEAKANFTN----VYVKNIHPDTGDEE 238
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ F + G +++ + + G+ RGFGFV +E D A++ +N
Sbjct: 239 FEEFFT-KVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELN 284
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ E F + G + SA + D + RGFGFV + +A +A+
Sbjct: 225 VYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDN-EGKLRGFGFVNYENHNDAAKAVEEL 283
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ + G+T+ V R ++ +L+ Y+ F + Y G NL +
Sbjct: 284 NETDFKGQTLHVG-----RAQKKHERLQELKKQYEAFRLEKLEKYQGVNLFVKNLDDTID 338
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Q L + F + S KV+ G+S+GFGFV F T E+ A+ N
Sbjct: 339 DQKLEEEFAPYGTITSVKVM-RSENGKSKGFGFVCFSTPEEATKAITEKN 387
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E QE +++ EA E+ K + L+V NL ++ L E FA GT+
Sbjct: 298 AQKKHERLQELKKQYEAFRLEKLEKY----QGVNLFVKNLDDTIDDQKLEEEFAPYGTIT 353
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
S +++ +S+GFGFV + EEA +AI + + G+ + V
Sbjct: 354 SVKVMRSE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 398
>gi|401401445|ref|XP_003881013.1| hypothetical protein NCLIV_040540 [Neospora caninum Liverpool]
gi|325115425|emb|CBZ50980.1| hypothetical protein NCLIV_040540 [Neospora caninum Liverpool]
Length = 434
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 18/215 (8%)
Query: 65 FRQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAA--RLYVGNLPY 122
F + + S +G + EDS P ++ E+ + + P + E +L+VG L
Sbjct: 71 FGENADSREGPRNEEDSSPPPASDAEDPSGGSGGDGQNSPPRESDKEVQMRKLFVGGLSR 130
Query: 123 SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL---FDGSQI 179
S T+ SL F + G VA +E+++D+ T RSRGFGF+T + E + DG+Q+
Sbjct: 131 STTTDSLRTYFQQYGDVADSEVLFDKFTGRSRGFGFITFTTPEPVSRVADMRHTVDGTQV 190
Query: 180 GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQ 239
R +PR R G G +++ G + + + LR F+
Sbjct: 191 EVRRA------IPREEAREHGG-------SGADRDAGRLFVGGISDDVNDESLRAYFRHY 237
Query: 240 PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+ SA V+ +R R RGFGFV F +D + A+
Sbjct: 238 GEIQSANVMVDRQNNRPRGFGFVIFRNPDDAEKAI 272
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
K++ G L T+ LR FQ + ++V+F+++TGRSRGFGF+TF T E + D
Sbjct: 121 RKLFVGGLSRSTTTDSLRTYFQQYGDVADSEVLFDKFTGRSRGFGFITFTTPEPVSRVAD 180
Query: 276 AMNGV 280
+ V
Sbjct: 181 MRHTV 185
>gi|115482332|ref|NP_001064759.1| Os10g0457000 [Oryza sativa Japonica Group]
gi|31432465|gb|AAP54095.1| Splicing factor 3B subunit 4, putative, expressed [Oryza sativa
Japonica Group]
gi|113639368|dbj|BAF26673.1| Os10g0457000 [Oryza sativa Japonica Group]
gi|215737182|dbj|BAG96111.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218184664|gb|EEC67091.1| hypothetical protein OsI_33883 [Oryza sativa Indica Group]
Length = 355
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 19/174 (10%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A ++ A YVGNL ++ L E+F +AG V + + DRVT+ +G+GFV S E+
Sbjct: 19 AERNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A AI++ + ++ G+ ++VN +A+ K +D ++ GNL
Sbjct: 79 ADYAIKILNMIKLYGKPIRVN---------KASQDKK-------SLDVGANLFIGNLDPD 122
Query: 227 LTSQGLRDAFQGQPGLL--SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + L D F G++ + K++ + TG SRGFGFV++++ E A++AMN
Sbjct: 123 VDEKLLYDTFSAF-GVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMN 175
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L++GNL + L + F+ G V + +I+ D T SRGFGFV+ S E +
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFESSD 168
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
+AI + + R + V++
Sbjct: 169 QAIEAMNNQHLCNRPITVSY 188
>gi|212274429|ref|NP_001130902.1| uncharacterized protein LOC100192006 [Zea mays]
gi|194690404|gb|ACF79286.1| unknown [Zea mays]
gi|413934109|gb|AFW68660.1| hypothetical protein ZEAMMB73_687460 [Zea mays]
Length = 357
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 19/174 (10%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A ++ A YVGNL ++ L E+F +AG V + + DRVT+ +G+GFV S E+
Sbjct: 19 AERNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A AI+ + ++ G+ ++VN +A+ K +D ++ GNL
Sbjct: 79 ADYAIKTLNMIKLYGKPIRVN---------KASQDKK-------SLDVGANLFIGNLDPD 122
Query: 227 LTSQGLRDAFQGQPGLL--SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + L D F G++ + K++ + TG SRGFGFV++E+ E A++AMN
Sbjct: 123 VDEKLLYDTFSAF-GVIVTNPKIMRDPETGNSRGFGFVSYESFESSDQAIEAMN 175
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L++GNL + L + F+ G V + +I+ D T SRGFGFV+ S E +
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYESFESSD 168
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
+AI + + R + V++
Sbjct: 169 QAIEAMNNQHLCNRPITVSY 188
>gi|120610816|ref|YP_970494.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120589280|gb|ABM32720.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 116
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ ++YVGNLPYS+T SL FAE G V S++I+ DR T RS+GFGFV M S E+A+ AI
Sbjct: 2 SCKIYVGNLPYSVTDESLRSNFAEFGGVTSSKIMTDRETGRSKGFGFVEMSSAEDAQSAI 61
Query: 172 RLFDGSQIGGRTVKVNFPEVPR 193
+G + GR++ VN PR
Sbjct: 62 TGLNGLSVDGRSIVVNLAR-PR 82
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
KIY GNL + +T + LR F G+ S+K++ +R TGRS+GFGFV +AED QSA+
Sbjct: 4 KIYVGNLPYSVTDESLRSNFAEFGGVTSSKIMTDRETGRSKGFGFVEMSSAEDAQSAITG 63
Query: 277 MNGV 280
+NG+
Sbjct: 64 LNGL 67
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 18/182 (9%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
E E P V + A LYVG L S++ + L ++F+ G+V+S + D +T S G+ +V
Sbjct: 32 EAESPNV--ENVTASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYV 89
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
E K AI + + I GR ++ + + P ++ G I+
Sbjct: 90 NFNDHEAGKTAIEKLNYTAIKGRPCRIMW---------SQRDPSMRKKGSG------NIF 134
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL + ++ L + F +LS K+ + TG+S+GFGFV FE E + A+DA+NG
Sbjct: 135 IKNLHPDIDNKTLYETFSVFGNILSCKIANDE-TGKSKGFGFVHFENEEAAREAIDAING 193
Query: 280 VV 281
++
Sbjct: 194 ML 195
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL + + +L E F+ G + S +I D T +S+GFGFV + E A+EAI
Sbjct: 130 SGNIFIKNLHPDIDNKTLYETFSVFGNILSCKIANDE-TGKSKGFGFVHFENEEAAREAI 188
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ V V P V + ++ KL + F + +Y NL T +
Sbjct: 189 DAINGMLLNGQEVYVA-PHVSKKDRQS----KLDEARANFTN----VYVKNLDLEATEED 239
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ F+ G +++ + + G+SRGFGFV FE ED A++A+N
Sbjct: 240 FENLFKPY-GTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALN 285
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 23/191 (12%)
Query: 104 PKVAASDEAARL----------YVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
P V+ D ++L YV NL T +F GT+ S + D +S
Sbjct: 205 PHVSKKDRQSKLDEARANFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKD-AEGKS 263
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD 213
RGFGFV + E+A +A+ + ++ G+T+ V R ++ +L+ YQ
Sbjct: 264 RGFGFVDFENHEDAVKAVEALNDTEYKGQTLYVG-----RAQKKYERLQELKKQYQASKL 318
Query: 214 SPHKIYAG------NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267
Y G NL + + L++ F + SA+V+ G+S+GFGFV F T
Sbjct: 319 EKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVM-RTENGKSKGFGFVCFSTP 377
Query: 268 EDLQSALDAMN 278
E+ A+ N
Sbjct: 378 EEATRAITEKN 388
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A + L++ NL S+ L E FA GT+ SA ++ +S+GFGFV + EEA
Sbjct: 322 AKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRTE-NGKSKGFGFVCFSTPEEA 380
Query: 168 KEAIRLFDGSQIGGRTVKV 186
AI + + G+ + V
Sbjct: 381 TRAITEKNQQIVAGKPLYV 399
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V + + ++A+
Sbjct: 61 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTTDGEKAL 120
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 121 EELNYTLIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDTAIDNKA 165
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + +G S+G+GFV +ET E A+ +NG++
Sbjct: 166 LHDTFAAFGNILSCKVAQDE-SGASKGYGFVHYETDEAASQAIKHVNGML 214
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 10/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A +AI+
Sbjct: 152 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDE-SGASKGYGFVHYETDEAASQAIKHV 210
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K + F + IY N+ T + R+
Sbjct: 211 NGMLLNEKKVFVGH-HIPKKDRQS----KFEEMKANFTN----IYVKNIPVEATDEEFRE 261
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F+ + SA + ++ TG+SRGFGFV F E +A+D +NG
Sbjct: 262 LFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATAVDELNG 306
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 84/213 (39%), Gaps = 54/213 (25%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+P T E+F + G V SA + D+ T +SRGFGFV + E A A+
Sbjct: 245 IYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATAVDEL 304
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+G G+ + V R ++ +L+ SY+ ++ K +Y NL +
Sbjct: 305 NGKDFKGQDLYVG-----RAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVD 359
Query: 229 SQGLRDAFQGQPGLLSAKVIFE-------------------------------------- 250
+ LR+ F + SAKV+ +
Sbjct: 360 DEKLRELFTPFGAITSAKVMRDSAAETAEAEKKEEEKNKENKKEGDAEEGEKADGEKKEA 419
Query: 251 -----RYTGRSRGFGFVTFETAEDLQSALDAMN 278
R G+S+GFGFV F ++ A+ MN
Sbjct: 420 PKSEKRTVGKSKGFGFVCFSNPDEATKAIADMN 452
>gi|440487895|gb|ELQ67659.1| RNA-binding protein rsd1 [Magnaporthe oryzae P131]
Length = 570
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 10/179 (5%)
Query: 104 PKVAASDEAAR--LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
P DE R ++V L + + L E F +AG VA A+IV DRV++RS+G G+V
Sbjct: 164 PPALTEDERDRRTVFVQQLAARLRTRELKEFFEKAGPVAEAQIVKDRVSNRSKGVGYVEF 223
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ E A++L G ++ G V V E + Q + F H++Y G
Sbjct: 224 KTEESVAAALQL-TGQKLLGIPVIVQPTEAEKNRAVKTESTGTQQTSVPF----HRLYVG 278
Query: 222 NLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
N+ + +T Q L++ F +P G L + + +GRSRG+GFV F A + AL+ MNG
Sbjct: 279 NIHFSITEQDLQNVF--EPFGELEFVQLQKDDSGRSRGYGFVQFRDATQAREALEKMNG 335
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
E E+ AV+ E S RLYVGN+ +S+T L VF G + ++ D +
Sbjct: 251 EAEKNRAVKTESTGTQQTSVPFHRLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDD-S 309
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF------PEVPRGGERAAMGPKL 204
RSRG+GFV +A+EA+ +G + GR ++V PE R GP
Sbjct: 310 GRSRGYGFVQFRDATQAREALEKMNGFDLAGRPIRVGLGNDKFTPESTANLLRGFQGPNG 369
Query: 205 QNSYQG 210
Q YQG
Sbjct: 370 QQQYQG 375
>gi|89902981|ref|YP_525452.1| RNA-binding region RNP-1 [Rhodoferax ferrireducens T118]
gi|89347718|gb|ABD71921.1| RNA-binding region RNP-1 [Rhodoferax ferrireducens T118]
Length = 140
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 50/74 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY+ L + FA GTV SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYTFRDEDLQQAFAAHGTVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDGSQIGGRTVKVN 187
+G Q GGR + VN
Sbjct: 64 MNGQQYGGRGLVVN 77
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + + L+ AF + SAKV+ ER TGRS+GFGFV + + Q+A++
Sbjct: 3 NKLYVGNLPYTFRDEDLQQAFAAHGTVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 276 AMNG 279
MNG
Sbjct: 63 GMNG 66
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 27/198 (13%)
Query: 95 EEAVEEEEEPKVAASDE-----------AARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
E+ VE+ E K++ S++ A LYVG L +++ + L ++F+ G+V+S
Sbjct: 6 EKTVEQLENLKISESEDQPSTTTSTETSPASLYVGELDPTVSEALLYDIFSPIGSVSSIR 65
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
+ D VT S G+ +V E K+AI + + I GR ++ + + P
Sbjct: 66 VCRDAVTKTSLGYAYVNFNDHEAGKKAIEQLNYTPIKGRLCRIMW---------SQRDPA 116
Query: 204 LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263
L+ G I+ NL + ++ L + F +LS+K+ + TG+S+GFGFV
Sbjct: 117 LRKKGSG------NIFIKNLHPDIDNKALFETFSVFGNILSSKIATDE-TGKSKGFGFVH 169
Query: 264 FETAEDLQSALDAMNGVV 281
FE + A+DA+NG++
Sbjct: 170 FEHESSAKEAIDALNGML 187
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 11/169 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL + + +L E F+ G + S++I D T +S+GFGFV AKEAI
Sbjct: 122 SGNIFIKNLHPDIDNKALFETFSVFGNILSSKIATDE-TGKSKGFGFVHFEHESSAKEAI 180
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ + V P + R ER + +L+ + F + +Y N+ T +
Sbjct: 181 DALNGMLLNGQEIYVA-PHLTRK-ERDS---QLEETKAHFTN----VYVKNINLETTDEE 231
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ F +LS+ + + G+ +GFGFV FE ED A++ +NG
Sbjct: 232 FNELFAKYGNVLSSS-LEKTEDGKLKGFGFVDFEKHEDAAKAVEELNGT 279
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVTMGSVEEAKEAIRL 173
+YV N+ T E+FA+ G V S+ + ++ D + +GFGFV E+A +A+
Sbjct: 218 VYVKNINLETTDEEFNELFAKYGNVLSSSL--EKTEDGKLKGFGFVDFEKHEDAAKAVEE 275
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGL 227
+G++ +T+ V+ R ++ +L+ Y+ Y G NL +
Sbjct: 276 LNGTEFKDQTLFVS-----RAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSI 330
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ L++ F + S +V+ G+S+GFGFV F T E+ A+ N
Sbjct: 331 DDEKLKEEFAPYGTITSVRVM-RTDNGKSKGFGFVCFSTPEEATKAITEKN 380
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E QE +++ EA E+ A + L+V NL S+ L E FA GT+
Sbjct: 291 AQKKYERMQELKKQYEASRLEK----MAKYQGVNLFVKNLDDSIDDEKLKEEFAPYGTIT 346
Query: 141 SAEIVYDRVTD--RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
S ++ TD +S+GFGFV + EEA +AI + + G+ + V
Sbjct: 347 SVRVMR---TDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 391
>gi|242039481|ref|XP_002467135.1| hypothetical protein SORBIDRAFT_01g020190 [Sorghum bicolor]
gi|241920989|gb|EER94133.1| hypothetical protein SORBIDRAFT_01g020190 [Sorghum bicolor]
Length = 355
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 19/174 (10%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A ++ A YVGNL ++ L E+F +AG V + + DRVT+ +G+GFV S E+
Sbjct: 19 AERNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A AI++ + ++ G+ ++VN +A+ K +D ++ GNL
Sbjct: 79 ADYAIKILNMIKLYGKPIRVN---------KASQDKK-------SLDVGANLFIGNLDPD 122
Query: 227 LTSQGLRDAFQGQPGLL--SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + L D F G++ + K++ + TG SRGFGFV++++ E A++AMN
Sbjct: 123 VDEKLLYDTFSAF-GVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMN 175
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L++GNL + L + F+ G V + +I+ D T SRGFGFV+ S E +
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFESSD 168
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
+AI + + R + V++
Sbjct: 169 QAIEAMNNQHLCNRPITVSY 188
>gi|195340414|ref|XP_002036808.1| GM12470 [Drosophila sechellia]
gi|194130924|gb|EDW52967.1| GM12470 [Drosophila sechellia]
Length = 299
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +Y G L ++ + L E+F +AG V + + DRVT +G+GFV S E
Sbjct: 6 IAERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A I++ + ++ G+ ++VN +A+ ++Q +D I+ GNL
Sbjct: 66 DADYGIKIMNMIKLYGKPIRVN---------KAS-------AHQKNLDVGANIFIGNLDV 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG+S+ F F+ F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNG 164
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 14/189 (7%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+E E A + E +Y+ N M L E+F + G S +++ D T +SRGFGF
Sbjct: 178 KEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTD-PTGKSRGFGF 236
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFV 212
V+ E+A +A+ +G+++ G+TV V + + R E +L+ + YQG
Sbjct: 237 VSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGV- 295
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+Y NL + + LR F + SAKV+ E GRS+GFGFV F + E+
Sbjct: 296 ----NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATK 349
Query: 273 ALDAMNGVV 281
A+ MNG +
Sbjct: 350 AVTEMNGRI 358
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
A S A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V
Sbjct: 5 TAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 64
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A+ A+ + + G+ +++ + + P L+ S G ++ NL
Sbjct: 65 DAERALDTMNFDVVKGKPIRIMW---------SQRDPSLRKSGVG------NVFIKNLDK 109
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+ FV FET + A++ MNG++
Sbjct: 110 SIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGML 163
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + + A AI
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 159
Query: 175 DGSQIGGRTVKV-NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A MG K + F + +Y N G + Q L+
Sbjct: 160 NGMLLNDRKVFVGRFKS--RKEREAEMGAKAKE----FTN----VYIKNFGDDMDDQRLK 209
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ F LS KV+ + TG+SRGFGFV++E ED A++ MNG
Sbjct: 210 ELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGT 255
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A
Sbjct: 293 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKA 350
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G +G + + V + R ER A L N Y
Sbjct: 351 VTEMNGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 383
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 17/166 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++ + L +F++ G V S + D VT RS G+G+V S +A A+
Sbjct: 39 LYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEAL 98
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + I G+T+++ + ++ +G I+ NL + ++ L D
Sbjct: 99 NYTPINGKTIRIMWSHRDPSTRKSGVG---------------NIFIKNLDESIDNKALHD 143
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F +LS K+ + GRS+G+GFV FET E A++ +NG+
Sbjct: 144 TFIAFGPILSCKIAHQ--DGRSKGYGFVHFETDEAANLAIEKVNGM 187
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 9/182 (4%)
Query: 105 KVAASDEA--ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
++AA+ E ++V NL M + E F+ G + + I+ D D+S+GFGFV
Sbjct: 205 RLAATGETKFTNVFVKNLDPEMAEEEINEHFSTFGVITNVVIMKDE-NDKSKGFGFVNFD 263
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE---RAAMGPKLQNSYQGFVDSPHKIY 219
E A+ A+ + SQ+G RT+ V + E R K +Q + + +Y
Sbjct: 264 DPEAARAAVETMNNSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGA--NLY 321
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL + + L+ F + SAKV+ + G S+GFGFV F + E+ A NG
Sbjct: 322 VKNLDDSIDDETLKQEFSRYGNITSAKVMRDE-KGISKGFGFVCFTSPEEASRAATETNG 380
Query: 280 VV 281
++
Sbjct: 381 LM 382
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F G + S +I + RS+G+GFV + E A AI
Sbjct: 127 IFIKNLDESIDNKALHDTFIAFGPILSCKIAHQ--DGRSKGYGFVHFETDEAANLAIEKV 184
Query: 175 DGSQIGGRTVKV-NFPEVPRGGERAAMG-PKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G Q+ G+ V V F V R AA G K N ++ NL + + +
Sbjct: 185 NGMQLVGKKVFVAKF--VKRSDRLAATGETKFTN-----------VFVKNLDPEMAEEEI 231
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ F G+++ VI + +S+GFGFV F+ E ++A++ MN
Sbjct: 232 NEHFSTF-GVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMN 276
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ A LYV NL S+ +L + F+ G + SA+++ D S+GFGFV S EEA A
Sbjct: 316 QGANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRDE-KGISKGFGFVCFTSPEEASRA 374
Query: 171 IRLFDGSQIGGRTVKV 186
+G I G+ + V
Sbjct: 375 ATETNGLMINGKPIYV 390
>gi|302892801|ref|XP_003045282.1| hypothetical protein NECHADRAFT_43518 [Nectria haematococca mpVI
77-13-4]
gi|256726207|gb|EEU39569.1| hypothetical protein NECHADRAFT_43518 [Nectria haematococca mpVI
77-13-4]
Length = 718
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 10/179 (5%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
K A +E L+V +LP S T+ +L + F++ V A +V D+ T SRG+GFVT
Sbjct: 35 KRARVEERRSLFVRSLPPSATNETLTDFFSQHYPVKHATVVVDQKTKESRGYGFVTFADA 94
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
++A EA + + GR +++ E PR A + + + P K+ NL
Sbjct: 95 DDATEAKKALHNQEWDGRRLRIEIAE-PRHRNSATGEVSANKARKEELQKPPKLIIRNLP 153
Query: 225 WGL-TSQGLRDAFQGQPGLLSAKVIFE---RYTGRSRGFGFVTFETAEDLQSALDAMNG 279
W + TS+ L + F+ K+ F + G+ +GFGF+T ++ + AL+A+NG
Sbjct: 154 WSIKTSEQLSNLFRS-----FGKIKFADLPQSQGKLKGFGFITIRGKKNAEKALEAING 207
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
+D + L++ NLP++ T L F G V A +V D+VT++ G GFV VE+AK
Sbjct: 317 TDNTSTLFIRNLPFTTTDEQLKGFFGHFGKVRYARVVMDKVTEKPAGTGFVCFFDVEDAK 376
Query: 169 EAIR 172
I+
Sbjct: 377 NCIK 380
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 114 RLYVGNLPYSM-TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+L + NLP+S+ TS L+ +F G + A++ + + +GFGF+T+ + A++A+
Sbjct: 146 KLIIRNLPWSIKTSEQLSNLFRSFGKIKFADLPQSQ--GKLKGFGFITIRGKKNAEKALE 203
Query: 173 LFDGSQIGGRTVKVNF 188
+G +I GRT+ V++
Sbjct: 204 AINGKEIDGRTLAVDW 219
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 91/191 (47%), Gaps = 18/191 (9%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+E E A + E +YV N M L E+F++ G S +++ D +SRGFGF
Sbjct: 177 QEREAELGARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDE-NGQSRGFGF 235
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA--------MGPKLQNSYQG 210
V EEA++A+ +G ++GGR + V + ER + M + N YQG
Sbjct: 236 VNFEKHEEAQKAVSNMNGKELGGRVLYVG--RAQKRSERQSELKRRFEQMKQERVNRYQG 293
Query: 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
+Y NL + + LR F + SAKV+ E G S+GFGFV F + E+
Sbjct: 294 V-----NLYVKNLDDIIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEA 346
Query: 271 QSALDAMNGVV 281
A+ MNG +
Sbjct: 347 TKAVTEMNGRI 357
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGIG---------------NIFIKNLDDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + SRGFGFV FET E A++ MNG++
Sbjct: 116 YDTFSTFGNILSCKVVCDE--NGSRGFGFVHFETHEAANQAINTMNGML 162
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + SRGFGFV + E A +AI
Sbjct: 101 IFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDE--NGSRGFGFVHFETHEAANQAINTM 158
Query: 175 DGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + R V V R E A + N IY N + + L
Sbjct: 159 NGMLLNDRKVFVGHFKSRQEREAELGARALEFTN-----------IYVKNFEGDMDDECL 207
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ F LS KV+ + G+SRGFGFV FE E+ Q A+ MNG
Sbjct: 208 QELFSQFGKTLSVKVMVDE-NGQSRGFGFVNFEKHEEAQKAVSNMNG 253
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ G + SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDIIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
+ +G + + + V + R ER A+
Sbjct: 350 VTEMNGRIVSTKPLYVALAQ--RKEERKAI 377
>gi|401842356|gb|EJT44580.1| NSR1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 393
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E A ++VG L +S+ L + F G V SA ++ +R TDRSRG+G+V + A+
Sbjct: 137 SGEPATIFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFENKSYAE 196
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLG 224
+AI+ G +I GR + + G + + F D+P + ++ GNL
Sbjct: 197 KAIQEMQGKEIDGRPINCDL------STSKPAGNNTNDRAKKFGDTPSEPSDTLFLGNLS 250
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + + F ++S ++ T + +GFG+V F + ED + AL+++ G
Sbjct: 251 FNADRDTIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSSLEDSKKALESLQG 305
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ ++ E+FA+ G V S I T++ +GFG+V S+E++K+A+
Sbjct: 244 LFLGNLSFNADRDTIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSSLEDSKKALESL 303
Query: 175 DGSQIGGRTVKVNF 188
G I R V++++
Sbjct: 304 QGEYIDNRPVRLDY 317
>gi|357140381|ref|XP_003571747.1| PREDICTED: uncharacterized protein LOC100831046 isoform 2
[Brachypodium distachyon]
Length = 383
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 14/161 (8%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG + + T + ++ F + G + + I+ D+ T RGFGFVT + L
Sbjct: 46 KIFVGGVAWETTEETFSKHFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKV--L 103
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
D I GRTV+V VPR + GPK + KI+ G L L+ LR
Sbjct: 104 EDEHNIDGRTVEVK-RTVPREEMSSKDGPKTR-----------KIFVGGLPASLSEDDLR 151
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
D F ++ +++ + TGRSRGFGFVTFE+ + ++ +
Sbjct: 152 DHFSSYGKVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVI 192
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 82 QDEPETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTV 139
+DE + E + V EE +++ D + +++VG LP S++ L + F+ G V
Sbjct: 104 EDEHNIDGRTVEVKRTVPREE---MSSKDGPKTRKIFVGGLPASLSEDDLRDHFSSYGKV 160
Query: 140 ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR-GGERA 198
+I+ D T RSRGFGFVT S + + I +GG+ V++ E + GG+ +
Sbjct: 161 VEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHS 220
Query: 199 AMG 201
+ G
Sbjct: 221 SNG 223
>gi|238505292|ref|XP_002383875.1| nucleolin protein Nsr1, putative [Aspergillus flavus NRRL3357]
gi|317151540|ref|XP_001824733.2| nucleolin protein Nsr1 [Aspergillus oryzae RIB40]
gi|220689989|gb|EED46339.1| nucleolin protein Nsr1, putative [Aspergillus flavus NRRL3357]
gi|391872083|gb|EIT81226.1| nuclear localization sequence binding protein [Aspergillus oryzae
3.042]
Length = 525
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 8/184 (4%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
EEP AS A L+VGNL +++ + L F E G ++ I+ +R T RSRGFG+V
Sbjct: 272 EEPAAGAS---ANLFVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEY 328
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPE-VPRGGERAAMGPKLQNSYQGFVD--SPHK- 217
+ +A +A ++I GR + +++ P E+ + Q + F D SP
Sbjct: 329 TNAVDAAKAFEAKRDTEIDGRKINLDYATGRPANREQGGFQDRAQARARSFGDQASPESD 388
Query: 218 -IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
++ GN+ + L + F + +L ++ + +GR +GFG+V F + E+ + A +
Sbjct: 389 TLFVGNIPFSANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQFSSVEEAREAFNE 448
Query: 277 MNGV 280
+NG
Sbjct: 449 LNGA 452
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
AS E+ L+VGN+P+S SL EVF + G++ + D + R +GFG+V SVEEA
Sbjct: 383 ASPESDTLFVGNIPFSANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQFSSVEEA 442
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPR 193
+EA +G++I GR V+++F PR
Sbjct: 443 REAFNELNGAEIDGRPVRLDF-STPR 467
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 33 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 90
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R A +G K + F + +Y N G + + L++
Sbjct: 91 NGMLLNDRKVFVGRFK-SRKEREAELGAKAKE----FTN----VYIKNFGEDMDDERLKE 141
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +GRS+GFGFV+FE ED Q A+D MNG
Sbjct: 142 IFNKFGAFLSVKVMTDD-SGRSKGFGFVSFEKHEDAQKAVDEMNG 185
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + RS+GFGFV+ E+
Sbjct: 117 AKAKEFTNVYIKNFGEDMDDERLKEIFNKFGAFLSVKVMTDD-SGRSKGFGFVSFEKHED 175
Query: 167 AKEAIRLFDGSQIGGRTVKV 186
A++A+ +G +I GR V V
Sbjct: 176 AQKAVDEMNGKEINGRQVYV 195
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
I+ NL + ++ L D F +LS KV+ + S+G+GFV FET E + A++ M
Sbjct: 33 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKM 90
Query: 278 NGVV 281
NG++
Sbjct: 91 NGML 94
>gi|46111259|ref|XP_382687.1| hypothetical protein FG02511.1 [Gibberella zeae PH-1]
Length = 767
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
K A +++ L+V +LP TS SL + F++ V A +V D+ T SRG+GFVT+
Sbjct: 34 KRARTEDRRSLFVRSLPPGATSESLTDFFSQHYPVKHATVVVDQKTKESRGYGFVTLADA 93
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
E+A EA + D GR ++++ E PR + + P+K+ NL
Sbjct: 94 EDAVEAKKALDKQDWNGRRIRIDVAE-PRQRNNTTGELPAHKIRKEEIQRPNKLIIRNLP 152
Query: 225 WGL-TSQGLRDAFQGQPGLLSAKVIFE---RYTGRSRGFGFVTFETAEDLQSALDAMNG 279
W + ++ L F+ KV F + G+ +GFGFVT + + AL+A+NG
Sbjct: 153 WSIKKAEQLEHLFRS-----YGKVKFADLPQTKGKLKGFGFVTLRGRPNAERALEAING 206
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
EPK +D ++ ++V NLP++ T L F G + A +V D+VT++ G GFV
Sbjct: 332 EPKKLMTDNSSTVFVRNLPFTTTDEQLKGFFGHFGKIRYARVVMDKVTEKPAGTGFVCFI 391
Query: 163 SVEEAKEAIR 172
+EAK I+
Sbjct: 392 DADEAKSCIK 401
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 114 RLYVGNLPYSMTSS-SLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+L + NLP+S+ + L +F G V A++ + + +GFGFVT+ A+ A+
Sbjct: 145 KLIIRNLPWSIKKAEQLEHLFRSYGKVKFADLP--QTKGKLKGFGFVTLRGRPNAERALE 202
Query: 173 LFDGSQIGGRTVKVNF 188
+G +I GRT+ V++
Sbjct: 203 AINGKEIDGRTLAVDW 218
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 16/182 (8%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
E + VA+S + LYVG+L + + L E F+ G V S + D +T RS G+ +V
Sbjct: 3 EMADKDVASSAKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYV 62
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
E+AK+A+ + + GR +++ + + R A G ++
Sbjct: 63 NFERPEDAKQALETMNFDIVHGRPIRIMWSQRRPSTSRVAAG---------------NVF 107
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL + S+ L + F ++S K+ + + +S+G+GFV FET E + A+D NG
Sbjct: 108 VKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQS-KSKGYGFVQFETEEAARKAIDGTNG 166
Query: 280 VV 281
V+
Sbjct: 167 VI 168
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V N + L ++FA+ G + S + D + GFGFV + ++A++A++
Sbjct: 199 VFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDG-DGKPNGFGFVAFENPDDAEKAVKDM 257
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ G K+ + ER A +L YQ + K Y G NL +
Sbjct: 258 QDYHLPGSDRKLYVSRFQKKCERLA---ELDRKYQLEKNERAKRYEGANLYLKNLDDAID 314
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR +F ++SAKV+ GRS+GFGFV F+ ++ A+ AM G
Sbjct: 315 DDMLRRSFGEYGNVISAKVM-RSDDGRSKGFGFVCFDKPDEAVKAMTAMKG 364
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 11/166 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A ++V NL S+ S +L F+ G + S ++ D + +S+G+GFV + E A++AI
Sbjct: 103 AGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQS-KSKGYGFVQFETEEAARKAI 161
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G G+ + V ER+ + N + ++ N L +
Sbjct: 162 DGTNGVIFEGKRIYVG--RFQSRSERSEQAKRTTNCFTN-------VFVKNFADILDKEK 212
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
L+ F ++S V + G+ GFGFV FE +D + A+ M
Sbjct: 213 LQQLFAKFGKIVSCAVSVDG-DGKPNGFGFVAFENPDDAEKAVKDM 257
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVT 160
E+ + A E A LY+ NL ++ L F E G V SA+++ R D RS+GFGFV
Sbjct: 291 EKNERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVM--RSDDGRSKGFGFVC 348
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
+EA +A+ G + + + V+ +
Sbjct: 349 FDKPDEAVKAMTAMKGKMVCTKPLYVSMAQ 378
>gi|320593519|gb|EFX05928.1| RNA splicing factor [Grosmannia clavigera kw1407]
Length = 610
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 7/167 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V L + + L + F +AG VA A+IV DRV++RS+G G+V S E A++L
Sbjct: 211 VFVQQLAARLRTRELKDFFEKAGPVAEAQIVKDRVSNRSKGVGYVEFRSEESVTAALQLT 270
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLGWGLTSQGLR 233
G ++ G V V E + + + N V P H++Y GN+ + +T LR
Sbjct: 271 -GQKLLGIPVIVQMTEAEKNRQVRSTAEATSNGNSTGV--PFHRLYVGNIHFSITESDLR 327
Query: 234 DAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F +P G L + + TGRSRG+GFV F ++ + AL+ MNG
Sbjct: 328 NVF--EPFGELEFVQLQKDDTGRSRGYGFVQFRDSDQAREALEKMNG 372
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGN+ +S+T S L VF G + ++ D T RSRG+GFV ++A+EA+
Sbjct: 311 RLYVGNIHFSITESDLRNVFEPFGELEFVQLQKDD-TGRSRGYGFVQFRDSDQAREALEK 369
Query: 174 FDGSQIGGRTVKV 186
+G + GR ++V
Sbjct: 370 MNGFDLAGRPIRV 382
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 17/166 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++ + L +F++ G V S + D VT RS G+G+V S +A A+
Sbjct: 40 LYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEAL 99
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + I G+T+++ + ++ +G I+ NL + ++ L D
Sbjct: 100 NYTPINGKTIRIMWSHRDPSTRKSGVG---------------NIFIKNLDESIDNKALHD 144
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F +LS K+ + GRS+G+GFV FET E A++ +NG+
Sbjct: 145 TFIAFGPILSCKIAHQ--DGRSKGYGFVHFETDEAANLAIEKVNGM 188
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 9/182 (4%)
Query: 105 KVAASDEA--ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
++AA+ E ++V NL M + E F+ G + + I+ D D+S+GFGFV
Sbjct: 206 RLAATGETKFTNVFVKNLDPEMAEEEIKEHFSTFGVITNVVIMKDE-NDKSKGFGFVNFD 264
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE---RAAMGPKLQNSYQGFVDSPHKIY 219
E A+ A+ + SQ+G RT+ V + E R K +Q + + +Y
Sbjct: 265 DPEAARAAVETMNNSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGA--NLY 322
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL + + L+ F + SAKV+ + G S+GFGFV F + E+ A NG
Sbjct: 323 VKNLDDSIDDETLKQEFSRYGNITSAKVMRDE-KGISKGFGFVCFTSPEEASRAATETNG 381
Query: 280 VV 281
++
Sbjct: 382 LM 383
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F G + S +I + RS+G+GFV + E A AI
Sbjct: 128 IFIKNLDESIDNKALHDTFIAFGPILSCKIAHQ--DGRSKGYGFVHFETDEAANLAIEKV 185
Query: 175 DGSQIGGRTVKV-NFPEVPRGGERAAMG-PKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G Q+ G+ V V F V R AA G K N ++ NL + + +
Sbjct: 186 NGMQLVGKKVFVAKF--VKRSDRLAATGETKFTN-----------VFVKNLDPEMAEEEI 232
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
++ F G+++ VI + +S+GFGFV F+ E ++A++ MN
Sbjct: 233 KEHFSTF-GVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMN 277
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ A LYV NL S+ +L + F+ G + SA+++ D S+GFGFV S EEA A
Sbjct: 317 QGANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRDE-KGISKGFGFVCFTSPEEASRA 375
Query: 171 IRLFDGSQIGGRTVKV 186
+G I G+ + V
Sbjct: 376 ATETNGLMINGKPIYV 391
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + + SRGFGFV FET E Q+A+ MNG++
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTMNGML 162
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +YV NL + L ++F++ G + S +++ D + SRGFGFV EE
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEE 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ GR + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL + + LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRGFGFV + E A+ AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E +G + F + IY NL + Q L+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-VELGARAME----FTN----IYVKNLHVDVDEQRLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ + +G SRGFGFV FE E+ Q A+ MNG
Sbjct: 210 LFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNMNG 253
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL S+ L + F+ G + SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G +G + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIVGTKPLYVALAQ--RKEERKAI---LTNQY 382
>gi|426221705|ref|XP_004023200.1| PREDICTED: LOW QUALITY PROTEIN: nucleolin [Ovis aries]
Length = 724
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 496 SGESKTLVLSNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFASFEDAK 551
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GR +++ + PRG A P ++ L T
Sbjct: 552 EALNSCNKREIEGRAIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 598
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 599 EETLKESFDGS---IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 644
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 17/180 (9%)
Query: 102 EEPKVAAS--DEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
E+PK S D AR L NLPY +T L EVF +A EI +S+G +
Sbjct: 393 EKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA-----VEIRLVSKDGKSKGIAY 447
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
+ + +A++ + G++I GR++ + + GE+ + +
Sbjct: 448 IEFKTEADAEKTLEEKQGTEIDGRSISLYYT-----GEKGQSQDHRGGKNSTWSGESKTL 502
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
NL + T + L++ F+ + + + G+S+G+ F+ F + ED + AL++ N
Sbjct: 503 VLSNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCN 558
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G++ A IV DR T S+GFGFV S E+
Sbjct: 580 ARSQPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEED 636
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 637 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 663
>gi|351731832|ref|ZP_08949523.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 177
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 52/74 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ S L + F + G V SA+++ +R T RS+GFGFV MG+ EA+ AI
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGNDAEAQAAING 63
Query: 174 FDGSQIGGRTVKVN 187
+G +GGR++ VN
Sbjct: 64 MNGQPLGGRSIVVN 77
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+K+Y GNL + + L AF GQ G + SAKV+ ER TGRS+GFGFV + Q+A+
Sbjct: 3 NKLYVGNLPYSVRDSDLEQAF-GQFGAVTSAKVMMERDTGRSKGFGFVEMGNDAEAQAAI 61
Query: 275 DAMNG 279
+ MNG
Sbjct: 62 NGMNG 66
>gi|53804863|ref|YP_113486.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
gi|53758624|gb|AAU92915.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
Length = 95
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 52/81 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++LYVGNL Y + + L FA GTV SA++V DR T RSRGFGFV MGS +EA+ AI
Sbjct: 2 GSKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAI 61
Query: 172 RLFDGSQIGGRTVKVNFPEVP 192
+G ++ GR + VN P
Sbjct: 62 AGLNGKEMDGRNLMVNEARPP 82
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K+Y GNL + + L F + SA+V+ +R TGRSRGFGFV + ++ Q+A+
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 277 MNG 279
+NG
Sbjct: 64 LNG 66
>gi|313244755|emb|CBY15469.1| unnamed protein product [Oikopleura dioica]
Length = 2588
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 98/199 (49%), Gaps = 21/199 (10%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
+QE+ + A + + + VA ++YVG++ Y + +++ + F G V S ++ YD
Sbjct: 2197 QQEKNTKMAATQLQRQRAVAI---MCKIYVGSIYYEIGEATIRQSFETFGPVRSIDMSYD 2253
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS 207
+ T+R +GF F+ E A A+ IGGR VKV G + +G Q +
Sbjct: 2254 QGTNRHKGFCFLEFECPEAAFLALEHMQSITIGGRAVKV--------GRLSNIG---QVA 2302
Query: 208 YQGFV-------DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFG 260
Q F+ H++Y N+ + ++ F+ +LS +++ TGR + +G
Sbjct: 2303 AQHFIAQFGNEAAKYHRVYIANIHVNIVDTDIKAVFESFGRVLSCQLVKNVDTGRHKNYG 2362
Query: 261 FVTFETAEDLQSALDAMNG 279
FV ++ ++ ++ A+ AMNG
Sbjct: 2363 FVEYDNSQSMKEAISAMNG 2381
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 110 DEAA---RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
+EAA R+Y+ N+ ++ + + VF G V S ++V + T R + +GFV + +
Sbjct: 2312 NEAAKYHRVYIANIHVNIVDTDIKAVFESFGRVLSCQLVKNVDTGRHKNYGFVEYDNSQS 2371
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVP 192
KEAI +G +GG+ ++V VP
Sbjct: 2372 MKEAISAMNGFDLGGQCIRVGPCVVP 2397
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L ++ + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPTASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALETMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + + S+G+GFV FET + + A+D MNG++
Sbjct: 110 IDNKALFDTFSAFGNILSCKVVCDEHG--SKGYGFVHFETRDAAERAIDKMNGML 162
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L +F + G S +++ D + S+GFGFV E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTDE-SGTSKGFGFVNFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQN-------SYQGFVDSPHKI 218
A++A+ +G ++ G+ + V + GER + K + YQG +
Sbjct: 244 AQKAVEEMNGKELNGKKIYVG--RAQKKGERQTELKRKFEQLKQDRITRYQGV-----NL 296
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL G+ + LR F + SAKV+ E GR++GFGFV F + E+ A+ MN
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRNKGFGFVCFSSPEEATKAVTEMN 354
Query: 279 GVV 281
G +
Sbjct: 355 GRI 357
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D S+G+GFV + + A+ AI
Sbjct: 101 IFIKNLDKSIDNKALFDTFSAFGNILSCKVVCDE--HGSKGYGFVHFETRDAAERAIDKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + L+
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDLRLKR 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G S+GFGFV FE ED Q A++ MNG
Sbjct: 210 LFGKFGPSLSVKVMTDE-SGTSKGFGFVNFERHEDAQKAVEEMNG 253
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A LYVG+L S+ + L +VFA+ G V S + D T RS G+ +V S +A A+
Sbjct: 39 ATSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARAL 98
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + + I G+ +++ + + P L+ S I+ NL + ++
Sbjct: 99 EMLNFTPINGKPIRIMY---------SNRDPSLRKS------GTANIFIKNLDKSIDNKA 143
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + +G S+G+GFV +E E Q+A+D +NG++
Sbjct: 144 LYDTFCVFGNILSCKVATD-ASGESKGYGFVQYERDEAAQAAIDKLNGML 192
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +++ NL S+ + +L + F G + S ++ D + S+G+GFV E A+ AI
Sbjct: 128 ANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATD-ASGESKGYGFVQYERDEAAQAAID 186
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-----HKIYAGNLGWGL 227
+G + + V V GP ++ + +SP + +Y NL
Sbjct: 187 KLNGMLMNDKKVYV--------------GPFIRKQERD--NSPGQVKFNNVYVKNLSENT 230
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
T L++ F G+ G +++ V+ GRS+ FGFV FE+ +D A+ +NG
Sbjct: 231 TEDDLKEIF-GKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELNG 281
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 7/167 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL + T L E+F + GT+ SA +V RS+ FGFV S ++A +A++
Sbjct: 221 VYVKNLSENTTEDDLKEIFGKFGTITSA-VVMREGDGRSKCFGFVNFESPDDAAQAVQEL 279
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPHK--IYAGNLGWGLTSQG 231
+G + + V + ER + K + + Q D +Y NL +
Sbjct: 280 NGKKFDDKEWYVG--RAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDK 337
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
LR+ F + S KV+ + G SRG GFV F++AED AL MN
Sbjct: 338 LRELFAEYGTITSCKVMRDS-NGVSRGSGFVAFKSAEDASRALAEMN 383
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E E E E+ E+ A+D + LY+ NL S+ L E+FAE GT+ S +++
Sbjct: 295 QKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVM 354
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D SRG GFV S E+A A+ + +G + + V
Sbjct: 355 RDS-NGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYV 394
>gi|351730017|ref|ZP_08947708.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 115
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++++YVGNLPYS+T S L F+E G V SA+++ DR T RS+GFGFV M S E A+ AI
Sbjct: 2 SSKIYVGNLPYSVTDSVLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAI 61
Query: 172 RLFDGSQIGGRTVKVNFPEVPR 193
G + GR++ VN PR
Sbjct: 62 SALHGMSVDGRSIVVNLAR-PR 82
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
KIY GNL + +T L F + SAKV+ +R TGRS+GFGFV +AE Q+A+ A
Sbjct: 4 KIYVGNLPYSVTDSVLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAISA 63
Query: 277 MNGV 280
++G+
Sbjct: 64 LHGM 67
>gi|449459840|ref|XP_004147654.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
gi|449498825|ref|XP_004160645.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
Length = 379
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 94/172 (54%), Gaps = 19/172 (11%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
++ A YVGNL ++ L E+F +AG V + + DRVT+ +G+GF+ S E+A
Sbjct: 22 NQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY 81
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI++ + ++ G+ ++VN +A+ K +D ++ GNL +
Sbjct: 82 AIKVLNMIKLYGKPIRVN---------KASQDKK-------SLDVGANLFIGNLDPDVDE 125
Query: 230 QGLRDAFQGQPGLL--SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L D F G++ + K++ + TG SRGFGF+++++ E +A++AMNG
Sbjct: 126 KLLYDTFSAF-GVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D A L++GNL + L + F+ G V + +I+ D T SRGFGF++ S E +
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 168
Query: 169 EAIRLFDGSQIGGRTVKVNF 188
AI +G + R + V++
Sbjct: 169 AAIEAMNGQYLCNRQITVSY 188
>gi|331284195|ref|NP_001193589.1| nucleolin [Bos taurus]
gi|296490214|tpg|DAA32327.1| TPA: nucleolin [Bos taurus]
Length = 720
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 492 SGESKTLVLSNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFASFEDAK 547
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GR +++ + PRG A P ++ L T
Sbjct: 548 EALNSCNKREIEGRAIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 594
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 595 EETLKESFDGS---IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 640
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 17/180 (9%)
Query: 102 EEPKVAAS--DEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
E+PK S D AR L NLPY +T L EVF +A EI +S+G +
Sbjct: 389 EKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA-----VEIRLVSKDGKSKGIAY 443
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
+ + +A++ + G++I GR++ + + GE+ + +
Sbjct: 444 IEFKTEADAEKTLEEKQGTEIDGRSISLYYT-----GEKGQSQDHRGGKNSTWSGESKTL 498
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
NL + T + L++ F+ + + + G+S+G+ F+ F + ED + AL++ N
Sbjct: 499 VLSNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCN 554
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G++ A IV DR T S+GFGFV S E+
Sbjct: 576 ARSQPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEED 632
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 633 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 659
>gi|440913256|gb|ELR62731.1| Nucleolin, partial [Bos grunniens mutus]
Length = 714
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 486 SGESKTLVLSNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFASFEDAK 541
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GR +++ + PRG A P ++ L T
Sbjct: 542 EALNSCNKREIEGRAIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 588
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 589 EETLKESFDGS---IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 634
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 17/180 (9%)
Query: 102 EEPKVAAS--DEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
E+PK S D AR L NLPY +T L EVF +A EI +S+G +
Sbjct: 383 EKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA-----VEIRLVSKDGKSKGIAY 437
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
+ + +A++ + G++I GR++ + + GE+ + +
Sbjct: 438 IEFKTEADAEKTLEEKQGTEIDGRSISLYYT-----GEKGQSQDHRGGKNSTWSGESKTL 492
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
NL + T + L++ F+ + + + G+S+G+ F+ F + ED + AL++ N
Sbjct: 493 VLSNLSYSATEETLQEVFEKATHIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCN 548
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G++ A IV DR T S+GFGFV S E+
Sbjct: 570 ARSQPSKTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEED 626
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 627 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 653
>gi|365088445|ref|ZP_09327889.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363417101|gb|EHL24188.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 111
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++++YVGNLPYS+T +SL F+E G V+SA+++ DR T RS+GFGFV M + E A+ AI
Sbjct: 2 SSKIYVGNLPYSVTDASLQSNFSEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAI 61
Query: 172 RLFDGSQIGGRTVKVNFPEVPR 193
G + GRT+ VN PR
Sbjct: 62 SGLHGMSVDGRTIVVNLAR-PR 82
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
KIY GNL + +T L+ F G+ SAKV+ +R TGRS+GFGFV AE Q+A+
Sbjct: 4 KIYVGNLPYSVTDASLQSNFSEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAISG 63
Query: 277 MNGV 280
++G+
Sbjct: 64 LHGM 67
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY G+L + + L EVF G VAS + D VT +S G+ ++ +V +A+ A+
Sbjct: 49 ASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 108
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ S I GR ++ + + P L+ S G +Y NL + ++ L
Sbjct: 109 TLNYSPINGRPCRLMW---------SHRDPALRRSGAG------NVYVKNLDRNIDNKAL 153
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
D F +LS KV G+SRGFGFV FE+ E ++A+ +NG+
Sbjct: 154 YDTFSLFGNILSCKVALTP-DGKSRGFGFVHFESDESAEAAIAKLNGM 200
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +YV NL ++ + +L + F+ G + S ++ +SRGFGFV S E A+ AI
Sbjct: 136 AGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVAL-TPDGKSRGFGFVHFESDESAEAAI 194
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G QIG +TV V + + +R+ PK F + +Y ++ T +
Sbjct: 195 AKLNGMQIGEKTVYV--AQFKKTADRSDGSPK------NFTN----VYIKHIPPSWTEEK 242
Query: 232 LRDAFQGQPGLLSAKVIFERYTG-RSRGFGFVTFETAEDLQSALDAMNG 279
+R+ F G F T + R F FV F E ++A++ M+G
Sbjct: 243 IREEF----GAFGEITSFAMQTDPKGRRFAFVNFAEFEQARAAVEDMDG 287
>gi|17530817|ref|NP_511058.1| spliceosomal protein on the X [Drosophila melanogaster]
gi|7290689|gb|AAF46136.1| spliceosomal protein on the X [Drosophila melanogaster]
gi|68051249|gb|AAY84889.1| RE50839p [Drosophila melanogaster]
gi|220952204|gb|ACL88645.1| Spx-PA [synthetic construct]
Length = 347
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 17/175 (9%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A ++ A +Y G L ++ + L E+F +AG V + + DRVT +G+GFV S E
Sbjct: 6 IAERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEE 65
Query: 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+A I++ + ++ G+ ++VN +A+ ++Q +D I+ GNL
Sbjct: 66 DADYGIKIMNMIKLYGKPIRVN---------KAS-------AHQKNLDVGANIFIGNLDV 109
Query: 226 GLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + L D F +L + K++ + TG+S+ F F+ F + E +A+DAMNG
Sbjct: 110 EVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNG 164
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 16/171 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
++A LYVG L ++T + L E+F G VAS + D VT RS G+ +V ++++ + A
Sbjct: 36 QSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERA 95
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + S I R ++ + + P L+ + QG I+ NL + ++
Sbjct: 96 LEQLNYSLIKNRACRIMW---------SQRDPALRKTGQG------NIFIKNLDEAIDNK 140
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + G SRG+GFV +E E +A+ +NG++
Sbjct: 141 ALHDTFAAFGNVLSCKVATDE-NGNSRGYGFVHYENGESASAAIQHVNGML 190
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G V S ++ D SRG+GFV + E A AI+
Sbjct: 128 IFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDE-NGNSRGYGFVHYENGESASAAIQHV 186
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + ER A K+ F + ++ NL + + +
Sbjct: 187 NGMLLNDKKVYVGHHVSKK--ERQA---KIDEQKSQFTN----VFIKNLDVSVDDEKFKQ 237
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ +LSA V+ + G SRGFGFV ++ E+ A++++N V
Sbjct: 238 ILEPYGEILSA-VVQKDEQGNSRGFGFVNYKNHEEAAKAVESLNEV 282
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 17/173 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ ++ G + SA + D + SRGFGFV + EEA +A+
Sbjct: 221 VFIKNLDVSVDDEKFKQILEPYGEILSAVVQKDEQGN-SRGFGFVNYKNHEEAAKAVESL 279
Query: 175 DGSQIGGRTV------KVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ ++ G+ + K N E+ R E+A + KL Y G +Y NL
Sbjct: 280 NEVEVDGKKIFAARAQKKNEREEELRRNYEQAKL-EKLA-KYAGV-----NLYVKNLDDD 332
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L F+ + SAK++ + G S+GFGFV F + ++ A+ ++G
Sbjct: 333 FDDERLVGEFEPFGTITSAKIMRDE-KGTSKGFGFVCFSSPDEATKAVSELSG 384
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 87 TEQEEEEEEEAVEEEEEPKVA--ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEI 144
+++ E EEE E+ K+ A LYV NL L F GT+ SA+I
Sbjct: 294 AQKKNEREEELRRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDERLVGEFEPFGTITSAKI 353
Query: 145 VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
+ D S+GFGFV S +EA +A+ G IG + + V+
Sbjct: 354 MRDE-KGTSKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSL 396
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|401409932|ref|XP_003884414.1| putative splicing factor [Neospora caninum Liverpool]
gi|325118832|emb|CBZ54384.1| putative splicing factor [Neospora caninum Liverpool]
Length = 550
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+V ++ A LY+GNL + L E+F + G V + + D++T +G+GFV +
Sbjct: 21 QVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFTNE 80
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
+A A++L + ++ G+++++N K + F D I+ GNL
Sbjct: 81 VDADYALKLMNMVKLYGKSLRLN---------------KSAQDRRNF-DVGANIFLGNLD 124
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + + D F +L+AK++ + TG SRGFGFV+F+T E +AL AMNG
Sbjct: 125 PDVDEKTIYDTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDAALAAMNG 179
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D A +++GNL + ++ + F+ G + +A+I+ D T SRGFGFV+ + E +
Sbjct: 113 DVGANIFLGNLDPDVDEKTIYDTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDA 172
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A+ +G I R + V++
Sbjct: 173 ALAAMNGQFICNRPIHVSY 191
>gi|294939182|ref|XP_002782349.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
gi|239893941|gb|EER14144.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
Length = 266
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY G+L + + L EVF G VAS + D VT +S G+ ++ +V +A+ A+
Sbjct: 48 ASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 107
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ S I GR ++ + + P L+ S G +Y NL + ++ L
Sbjct: 108 TLNYSPINGRPCRLMW---------SHRDPALRRSGAG------NVYVKNLDRNIDNKAL 152
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
D F +LS KV G+SRGFGFV FE+ E ++A+ +NG+
Sbjct: 153 YDTFSLFGNILSCKVALTP-DGKSRGFGFVHFESDESAEAAIAKLNGM 199
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +YV NL ++ + +L + F+ G + S ++ +SRGFGFV S E A+ AI
Sbjct: 135 AGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTP-DGKSRGFGFVHFESDESAEAAI 193
Query: 172 RLFDGSQIGGRTVKV 186
+G QIG +TV V
Sbjct: 194 AKLNGMQIGEKTVYV 208
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 16/171 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A
Sbjct: 43 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 102
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + I G+ ++ + + P L+ + QG ++ NL + ++
Sbjct: 103 LEDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIKNLDNAIDNK 147
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + S+G+GFV +ETAE +A+ +NG++
Sbjct: 148 ALHDTFAAFGNILSCKVAQDEFA-NSKGYGFVHYETAEAANNAIKHVNGML 197
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 135 VFIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFAN-SKGYGFVHYETAEAANNAIKHV 193
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + IY N+ +T R
Sbjct: 194 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----IYIKNIDLEITDDEFRT 244
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ G +++ + G+SRGFGFV + E ++A+ MN
Sbjct: 245 MFEAF-GEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMN 287
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 12/140 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ +T +F G + SA + +D+ +SRGFGFV + E A+ A+
Sbjct: 228 IYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQ-DGKSRGFGFVNYANHESAEAAVAEM 286
Query: 175 DGSQIG------GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+ ++ GR K + E + A + + YQG +Y NL +
Sbjct: 287 NEKEVKSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGV-----NLYVKNLTDDID 341
Query: 229 SQGLRDAFQGQPGLLSAKVI 248
+ LRD F + SAKV+
Sbjct: 342 DEKLRDLFTPYGTITSAKVM 361
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + R V V + R E A + N +Y N G + + L
Sbjct: 159 NGMLLNDRKVFVGRFKSQKEREAELGARAKEFTN-----------VYIKNFGEDMDDERL 207
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 208 KELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 15/165 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGP---ALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 250
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 17/181 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDE-SGKSKGFGFVSFERHED 240
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 241 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 295
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 296 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 353
Query: 281 V 281
+
Sbjct: 354 I 354
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 289 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 346
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 347 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 379
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 24/186 (12%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS-----------YQGFVDSP 215
A++A+ +G ++ G+ + V R +R +L+ YQG
Sbjct: 244 AQKAVDEMNGKELNGKQIYVG-----RAQKRVERQTELKRKFEQMKQDRITRYQGV---- 294
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+Y NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+
Sbjct: 295 -NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVT 351
Query: 276 AMNGVV 281
MNG +
Sbjct: 352 EMNGRI 357
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|408391758|gb|EKJ71126.1| hypothetical protein FPSE_08632 [Fusarium pseudograminearum CS3096]
Length = 770
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
K A +++ L+V +LP TS SL + F++ V A +V D+ T SRG+GFVT+
Sbjct: 34 KRARTEDRRSLFVRSLPPGATSESLTDFFSQHYPVKHATVVVDQKTKESRGYGFVTLADA 93
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
E+A EA + D GR ++++ E PR + + P+K+ NL
Sbjct: 94 EDAVEAKKALDKQDWNGRRIRIDVAE-PRQRNNTTGELPAHKIRKEEIQRPNKLIIRNLP 152
Query: 225 WGL-TSQGLRDAFQGQPGLLSAKVIFE---RYTGRSRGFGFVTFETAEDLQSALDAMNG 279
W + ++ L F+ KV F + G+ +GFGFVT + + AL+A+NG
Sbjct: 153 WSIKKAEQLEHLFRS-----YGKVKFADLPQTKGKLKGFGFVTLRGRPNAERALEAING 206
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
EPK +D ++ ++V NLP++ T L F G + A +V D+VT++ G GFV
Sbjct: 329 EPKKLMTDNSSTVFVRNLPFTTTDEQLKGFFGHFGKIRYARVVMDKVTEKPAGTGFVCFI 388
Query: 163 SVEEAKEAIR 172
+EAK I+
Sbjct: 389 DADEAKSCIK 398
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 114 RLYVGNLPYSMTSS-SLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+L + NLP+S+ + L +F G V A++ + + +GFGFVT+ A+ A+
Sbjct: 145 KLIIRNLPWSIKKAEQLEHLFRSYGKVKFADLP--QTKGKLKGFGFVTLRGRPNAERALE 202
Query: 173 LFDGSQIGGRTVKVNF 188
+G +I GRT+ V++
Sbjct: 203 AINGKEIDGRTLAVDW 218
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D T +S+GFGFV+ EE
Sbjct: 172 AKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEE 230
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYA 220
A +A+ +G I G+ V V + V R E +L+ + YQG +Y
Sbjct: 231 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGV-----NLYI 285
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL + + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 286 KNLDDTIDDEKLRKEFSPFGSITSAKVMLE--EGRSKGFGFVCFSSPEEATKAVTEMNGR 343
Query: 281 V 281
+
Sbjct: 344 I 344
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + + A AI
Sbjct: 88 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 145
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 146 NGMLLNDRKVFVG-----RFKSRKEREAELGAKAKEFTN----VYIKNFGDDMDDERLKE 196
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + TG+S+GFGFV+FE E+ A++ MNG
Sbjct: 197 LFGKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEEANKAVEEMNG 240
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 17/143 (11%)
Query: 139 VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERA 198
V S + D +T RS + +V +A+ A+ + I G+ +++ + +
Sbjct: 24 VLSIRVCRDMITRRSLFYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW---------S 74
Query: 199 AMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRG 258
P L+ S G ++ NL + ++ L D F +LS KV+ + S+G
Sbjct: 75 QRDPSLRKSGVG------NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKG 126
Query: 259 FGFVTFETAEDLQSALDAMNGVV 281
+ FV FET + A++ MNG++
Sbjct: 127 YAFVHFETQDAADRAIEKMNGML 149
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A
Sbjct: 279 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKA 336
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G +G + + V + R ER A L N Y
Sbjct: 337 VTEMNGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 369
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLHKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|224115710|ref|XP_002332123.1| predicted protein [Populus trichocarpa]
gi|222874943|gb|EEF12074.1| predicted protein [Populus trichocarpa]
Length = 425
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 18/176 (10%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P S R+YVGN+ ++T LAEVFA AG +A +++ D+S +GFV
Sbjct: 36 PAFDPSSSCRRVYVGNIHVNVTDKLLAEVFATAGPLAGCKLIRK---DKSS-YGFVDYHD 91
Query: 164 VEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
A AI G Q+ G+ +KVN+ A G NS + ++ G+L
Sbjct: 92 QSSAALAIMTLHGRQLYGQALKVNW----------AYG----NSQREDTSGHFHVFVGDL 137
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L F P +A+V+++ TGRS+G+GFV+F ++ QSA++ + G
Sbjct: 138 SPEVIDANLFACFSVFPSCSNARVMWDHKTGRSKGYGFVSFRNQQEAQSAINDLTG 193
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 22/186 (11%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L + ++L F+ + ++A +++D T RS+G+GFV+ + +EA+ AI
Sbjct: 131 HVFVGDLSPEVIDANLFACFSVFPSCSNARVMWDHKTGRSKGYGFVSFRNQQEAQSAIND 190
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-------SYQGFVDSPHK--------- 217
G +G R ++ N+ QN S +G +S ++
Sbjct: 191 LTGKWLGNRQIRCNWATKGVESNEDKQNSDNQNAVVLTNGSSEGGQESTNEEAPENNPAY 250
Query: 218 --IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+Y GNL +T L F L A VI + R +GFGFV + T E+ SA+
Sbjct: 251 TTVYVGNLSHEVTQAELHRHFHA----LGAGVIEDVRVQRDKGFGFVRYNTHEEAASAIQ 306
Query: 276 AMNGVV 281
NG +
Sbjct: 307 TGNGKI 312
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Query: 66 RQFSASF--DGFQVTEDSQDEPE------TEQEEEEEEEAVEEEEEPKVAASDEAARLYV 117
RQ ++ G + ED Q+ T E +E+ EE A +YV
Sbjct: 199 RQIRCNWATKGVESNEDKQNSDNQNAVVLTNGSSEGGQESTNEEAPENNPAY---TTVYV 255
Query: 118 GNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
GNL + +T + L F G A ++ D R +GFGFV + EEA AI+ +G
Sbjct: 256 GNLSHEVTQAELHRHFHALG----AGVIEDVRVQRDKGFGFVRYNTHEEAASAIQTGNGK 311
Query: 178 QIGGRTVKVNFPEVP 192
+ G+ VK ++ P
Sbjct: 312 IVCGKPVKCSWGSKP 326
>gi|326319545|ref|YP_004237217.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376381|gb|ADX48650.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 172
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 52/74 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ + L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDGSQIGGRTVKVN 187
+G +GGR++ VN
Sbjct: 64 MNGQALGGRSIVVN 77
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + + L AF + SAKV+ ER TGRS+GFGFV + + Q+A++
Sbjct: 3 NKLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 276 AMNG 279
MNG
Sbjct: 63 GMNG 66
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 15/165 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGP---ALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 250
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 17/181 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDE-SGKSKGFGFVSFERHED 240
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 241 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 295
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 296 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 353
Query: 281 V 281
+
Sbjct: 354 I 354
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 289 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 346
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 347 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 379
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V + + ++A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + G I+ NL + ++
Sbjct: 120 EELNYTLIKGRPCRIMWSQ---------RDPALRKTGAG------NIFIKNLDAAIDNKA 164
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ET E A+ +NG++
Sbjct: 165 LHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGML 213
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A +AI
Sbjct: 148 AGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAASQAI 206
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ +G + + V V +P+ ++ K + F + +Y N+ +T
Sbjct: 207 KHVNGMLLNEKKVYVGH-HIPKKDRQS----KFEEMKANFTN----VYVKNINHEVTDDE 257
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
R+ F+ + G +++ + G++RGFGFV F T E A+D +NG
Sbjct: 258 FRELFE-KFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKAVDDLNG 304
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 84/210 (40%), Gaps = 52/210 (24%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ + +T E+F + G V S+ + D+ ++RGFGFV + E A +A+
Sbjct: 244 VYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQ-EGKTRGFGFVNFTTHEAAAKAVDDL 302
Query: 175 DGSQIGGRTVKVNFPEVPRGGE----RAAMGPKLQ--NSYQGFVDSPHKIYAGNLGWGLT 228
+G G+ + V + E R+ +L+ N YQG +Y NLG +
Sbjct: 303 NGKDFRGQDLYVGRAQKKHEREEELRRSYEAARLEKANKYQGV-----NLYIKNLGDDVD 357
Query: 229 SQGLRDAFQGQPGLLSAKVIF--------------------------------------- 249
+ LR F + SAKV+
Sbjct: 358 DEKLRAMFSEYGPITSAKVMRDSLIEGEEKDEKDKENKKEGETKEEEEKEGSAEKKTEKK 417
Query: 250 -ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+R G+S+GFGFV F +D A+ MN
Sbjct: 418 GDRKLGKSKGFGFVCFSNPDDATKAVTEMN 447
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L +T + L E+F+ G VAS + D VT RS G+ +V + + ++A+
Sbjct: 60 SASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 119
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 120 EELNYTVINGRPCRIMW---------SQRDPALRKNGQG------NVFIKNLDVAIDNKA 164
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ET E A+ +NG++
Sbjct: 165 LHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAAAQAIKHVNGML 213
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A +AI+
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAAAQAIKHV 209
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K + F + +Y N+ + RD
Sbjct: 210 NGMLLNEKKVYVGH-HIPKKDRQS----KFEEMKANFTN----VYVKNINSEASDDEFRD 260
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + G +++ + G+SRGFGFV F T E A++ +NG
Sbjct: 261 LFT-KYGEVTSSSLARDQEGKSRGFGFVNFTTHEAASQAVEELNG 304
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 79/217 (36%), Gaps = 60/217 (27%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ + ++F + G V S+ + D+ +SRGFGFV + E A +A+
Sbjct: 244 VYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQ-EGKSRGFGFVNFTTHEAASQAVEEL 302
Query: 175 DGSQIGGRTVKVNFP-------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+G G+ + V E R AA K N YQG +Y NL +
Sbjct: 303 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARQEKA-NKYQGV-----NLYIKNLSDDV 356
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYT---------------------------------- 253
+ LR F + SAKV+ + +
Sbjct: 357 DDEKLRAMFSEFGPITSAKVMRDSISEGEDEEKAEEETPAPEAEVKKEDSEADADSQEAA 416
Query: 254 ------------GRSRGFGFVTFETAEDLQSALDAMN 278
G+S+GFGFV F ED A+ MN
Sbjct: 417 DKKDAKKGDKKLGKSKGFGFVCFSNPEDATKAVADMN 453
>gi|45544646|ref|NP_956311.1| cold inducible RNA binding protein isoform 2 [Danio rerio]
gi|28856196|gb|AAH48027.1| Cold inducible RNA binding protein [Danio rerio]
gi|182891172|gb|AAI64022.1| Cirbp protein [Danio rerio]
Length = 184
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L++G L Y T SL E F++ GT+A +++ DR TDRSRGFGFVT + E+AK
Sbjct: 2 SDEG-KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAK 60
Query: 169 EAIRLFDGSQIGGRTVKVN 187
+A+ +G Q+ GR ++V+
Sbjct: 61 DAMAAMNGKQVDGRMIRVD 79
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + T Q L +AF + VI +R T RSRGFGFVTFE ED + A+ A
Sbjct: 6 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 65
Query: 277 MNG 279
MNG
Sbjct: 66 MNG 68
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 15/165 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGP---ALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 250
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 17/181 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDE-SGKSKGFGFVSFERHED 240
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 241 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 295
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 296 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 353
Query: 281 V 281
+
Sbjct: 354 I 354
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 289 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 346
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 347 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 379
>gi|15221071|ref|NP_172630.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75336898|sp|Q9SAB3.1|RB45B_ARATH RecName: Full=Polyadenylate-binding protein RBP45B;
Short=Poly(A)-binding protein RBP45B; AltName:
Full=RNA-binding protein 45B; Short=AtRBP45B
gi|4835793|gb|AAD30259.1|AC007296_20 Similar to gb|U90212 DNA binding protein ACBF from Nicotiana
tabacum and contains 3 PF|00076 RNA recognition motif
domains. ESTs gb|T44278, gb|R65195, gb|N65904,
gb|H37499, gb|R90487, gb|N95952, gb|T44278, gb|Z20166,
gb|N96891, gb|W43137, gb|F15504, gb|F15495 and gb|Z30868
come from this gene [Arabidopsis thaliana]
gi|20260604|gb|AAM13200.1| similar to gb|U90212 DNA binding protein ACBF from Nicotiana
tabacum and contains 3 PF|00076 RNA recognition motif
domains [Arabidopsis thaliana]
gi|30725662|gb|AAP37853.1| At1g11650 [Arabidopsis thaliana]
gi|332190643|gb|AEE28764.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 405
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
+DE L++G+L Y M + L FA G + SA+++ ++ T + G+GF+ S A+
Sbjct: 58 ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAE 117
Query: 169 EAIRLFDGSQIGG---RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLG 224
++ F+ + I + ++N+ + G +R DSP + I+ G+L
Sbjct: 118 RVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRD--------------DSPDYTIFVGDLA 163
Query: 225 WGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T L + F+ P + AKV+ +R TGR++G+GFV F + A+ MNGV
Sbjct: 164 ADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGV 220
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DRVT R++G+GFV E A+
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK--LQNSYQGFV--DSPHK--IYAGNLGWGL 227
+G R +++ P ++ G + Q+S G + P+ ++ G L +
Sbjct: 217 MNGVPCSTRPMRIG----PAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASV 272
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F ++ K+ + GFV F + AL +NGV
Sbjct: 273 TDDHLKNVFSQYGEIVHVKIP------AGKRCGFVQFSEKSCAEEALRMLNGV 319
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L S+T L VF++ G EIV+ ++ R GFV A+EA+R+
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYG-----EIVHVKIPAGKR-CGFVQFSEKSCAEEALRML 316
Query: 175 DGSQIGGRTVKVNFPEVP 192
+G Q+GG TV++++ P
Sbjct: 317 NGVQLGGTTVRLSWGRSP 334
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|395007942|ref|ZP_10391636.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
gi|394314048|gb|EJE51000.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
Length = 117
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++++YVGNLPYS+T S+L F+E G V SA+++ DR T RS+GFGFV M S E A+ AI
Sbjct: 2 SSKIYVGNLPYSVTDSTLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAI 61
Query: 172 RLFDGSQIGGRTVKVNFPEVPR 193
G + GR++ VN PR
Sbjct: 62 TGLHGMSVDGRSIVVNLAR-PR 82
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
KIY GNL + +T L F + SAKV+ +R TGRS+GFGFV +AE Q+A+
Sbjct: 4 KIYVGNLPYSVTDSTLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAITG 63
Query: 277 MNGV 280
++G+
Sbjct: 64 LHGM 67
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLHKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|449447863|ref|XP_004141686.1| PREDICTED: uncharacterized protein LOC101220676 [Cucumis sativus]
gi|449525968|ref|XP_004169988.1| PREDICTED: uncharacterized LOC101220676 [Cucumis sativus]
Length = 700
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S + +L+VG + + T + + F++ G +A + I+ D+ T R RGFGFVT A
Sbjct: 419 SSSSGKLFVGGVAWETTEDTFRDYFSKYGEIADSVIMIDKHTGRPRGFGFVTFCDPAIAD 478
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+++ I GR V EV R RA M K+ V KI+ G + GLT
Sbjct: 479 MVLKI--DHIIDGRAV-----EVKRTVPRADMNDKM-------VSRTKKIFVGGIPPGLT 524
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+ +D F ++ +++ + T RSRGFGF+TFE + +++
Sbjct: 525 EEEFKDYFSSFGRIIEHQIMIDYKTKRSRGFGFITFENEDSVENIF 570
>gi|367010890|ref|XP_003679946.1| hypothetical protein TDEL_0B06060 [Torulaspora delbrueckii]
gi|359747604|emb|CCE90735.1| hypothetical protein TDEL_0B06060 [Torulaspora delbrueckii]
Length = 345
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++GNL Y T L + F+E G V A+I+ R RG G V + ++ EAI
Sbjct: 45 ANSIFIGNLTYDCTPEDLKDHFSEVGEVVRADIITSR--GHHRGMGTVEFTNSDDVDEAI 102
Query: 172 RLFDGSQIGGRTVKVNFPEVP------RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
R +D S R V V P R A K ++ Y ++++ NL +
Sbjct: 103 RRYDSSYFMDRQVFVRQDNPPPESARERPPREARERVKARDQYPQHQYPAYEVFVANLPY 162
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ Q L+D F+ ++ A V +R G SRGFG F T+E++Q+A++ NG
Sbjct: 163 SINWQALKDMFKEVGNVIRADVELDR-NGYSRGFGTAIFGTSEEMQAAIERYNG 215
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 25/216 (11%)
Query: 82 QDEPETEQEEEEEEEAVEEEEEPKVAASDE-------AARLYVGNLPYSMTSSSLAEVFA 134
QD P E E E +V A D+ A ++V NLPYS+ +L ++F
Sbjct: 119 QDNPPPESARERPPREARE----RVKARDQYPQHQYPAYEVFVANLPYSINWQALKDMFK 174
Query: 135 EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
E G V A++ DR SRGFG G+ EE + AI ++G ++ GR + V G
Sbjct: 175 EVGNVIRADVELDR-NGYSRGFGTAIFGTSEEMQAAIERYNGYELEGRVLDVREGRNAPG 233
Query: 195 GERAAMGPKLQNSYQ------------GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL 242
E A + P + + G + + IY NL + L D F+ +
Sbjct: 234 PETAPVAPPVAAEAEVPQKSEFTEGVLGGGERNNLIYCTNLPLSTATSDLYDLFETIGKV 293
Query: 243 LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+A++ ++ G+ G V + ED ++ +N
Sbjct: 294 NNAELKYDA-DGQPLGIAVVEYANIEDADVCMERLN 328
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|297853192|ref|XP_002894477.1| hypothetical protein ARALYDRAFT_474538 [Arabidopsis lyrata subsp.
lyrata]
gi|297340319|gb|EFH70736.1| hypothetical protein ARALYDRAFT_474538 [Arabidopsis lyrata subsp.
lyrata]
Length = 417
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 18/165 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y GN+ +T L E+FA G + S +++ D+S +GFV A AI
Sbjct: 61 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRK---DKS-SYGFVHYFDRRCASMAIMTL 116
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G I G+ +KVN+ A G + S S I+ G+L +T L D
Sbjct: 117 NGRHIFGQPMKVNWA--------YATGQREDTS------SHFNIFVGDLSPEVTDAALFD 162
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+F A+V++++ TGRSRGFGFV+F +D Q+A++ MNG
Sbjct: 163 SFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 207
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 36/189 (19%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T ++L + F+ + + A +++D+ T RSRGFGFV+ + ++A+ AI
Sbjct: 146 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 175 DGSQIGGRTVKVNFP-------------------EVPRGGERAAMGPKLQNSYQGFVDSP 215
+G + R ++ N+ E+ G G +L N D+P
Sbjct: 206 NGKWLSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSED--GRELSNE-----DAP 258
Query: 216 HK------IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
+Y GNL +T L F L A I E R +GFGFV + T ++
Sbjct: 259 ENNPQYTTVYVGNLSPEVTQLDLHRLFY----TLGAGAIEEVRVQRDKGFGFVRYNTHDE 314
Query: 270 LQSALDAMN 278
A+ N
Sbjct: 315 AALAIQMGN 323
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|298528142|ref|ZP_07015546.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511794|gb|EFI35696.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 84
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLP+S T + L + FAE G V+SA+I+ DR T RSRGFGFV M + A EAI
Sbjct: 4 LYVGNLPWSTTEAQLRDSFAEFGEVSSAKIIEDRETGRSRGFGFVEMEN--GADEAIEAL 61
Query: 175 DGSQIGGRTVKVNFPEVPR 193
+G GGR++KVN + R
Sbjct: 62 NGKDYGGRSIKVNVAKPKR 80
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y GNL W T LRD+F + SAK+I +R TGRSRGFGFV E D A++A+
Sbjct: 4 LYVGNLPWSTTEAQLRDSFAEFGEVSSAKIIEDRETGRSRGFGFVEMENGAD--EAIEAL 61
Query: 278 NG 279
NG
Sbjct: 62 NG 63
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGAALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGINDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGINDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A LYVG+L S+ + L +VF++ G V S + D + +S G+ +V + +A A+
Sbjct: 34 ATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARAL 93
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
L + + I G+ +++ + ++ G I+ NL + ++
Sbjct: 94 ELLNFTPINGKPIRIMYSNRDPSSRKSGTG---------------NIFIKNLDKSIDNKA 138
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS K+ + +G SRG+GFV FE E QSA+D +NG++
Sbjct: 139 LYDTFCAFGNILSCKIATDP-SGESRGYGFVQFEKDESAQSAIDKLNGML 187
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 7/185 (3%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
V +++ V+++ + + +YV NL ++T L E+F + GT+ SA ++ D +SR FG
Sbjct: 199 VRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDS-DGKSRCFG 257
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGER-AAMGPKLQNSYQGFVDS-- 214
FV + + A +A++ +G + + V + ER + K + + Q +
Sbjct: 258 FVNFENADAAAQAVQELNGKIFNDKELYVG--RAQKKSEREMELKEKFEKNVQEVAEKFQ 315
Query: 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+Y NL + + LR+ F + S KV+ + G SRG GFV F++AED AL
Sbjct: 316 NTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDS-NGVSRGSGFVAFKSAEDANRAL 374
Query: 275 DAMNG 279
MNG
Sbjct: 375 TEMNG 379
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F G + S +I D + SRG+GFV E A+ AI
Sbjct: 125 IFIKNLDKSIDNKALYDTFCAFGNILSCKIATD-PSGESRGYGFVQFEKDESAQSAIDKL 183
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK---IYAGNLGWGLTSQG 231
+G I + V V GP ++ + V S K +Y NL +T
Sbjct: 184 NGMLINDKKVFV--------------GPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDE 229
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L++ F G+ G +++ V+ G+SR FGFV FE A+ A+ +NG +
Sbjct: 230 LKEMF-GKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKI 278
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 81 SQDEPETEQEEEEE-EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTV 139
+Q + E E E +E+ E+ V+E VA + LY+ NL ++ L E+FAE G +
Sbjct: 289 AQKKSEREMELKEKFEKNVQE-----VAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNI 343
Query: 140 ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
S +++ D SRG GFV S E+A A+ +G +G + + V
Sbjct: 344 TSCKVMRDS-NGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYV 389
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D +T RS G+ +V S + ++A+
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 124 EELNYTLIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDVAIDNKA 168
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + G S+G+GFV +ET E A+ +N ++
Sbjct: 169 LHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHVNNML 217
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A +AI+
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHV 213
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + V V + +P+ ++ K + F + IY N+ T + RD
Sbjct: 214 NNMLLNEKKVYVGY-HIPKKDRQS----KFEEMKANFTN----IYVKNISLEATDEEFRD 264
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + G +++ + G+SRGFGFV F T E A++ +NG
Sbjct: 265 LF-AKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNG 308
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 81/216 (37%), Gaps = 60/216 (27%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ T ++FA+ G V S+ + D +SRGFGFV + E A +A+
Sbjct: 248 IYVKNISLEATDEEFRDLFAKYGDVTSSSLARDS-EGKSRGFGFVNFTTHECAAKAVEEL 306
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+G + G+ + V E+ + E A + + N YQG +Y NL
Sbjct: 307 NGKEFRGQDLYVGRAQKKHEREEELRKSYEAARL--EKANKYQGV-----NLYIKNLADD 359
Query: 227 LTSQGLRDAFQGQPGLLSAKVIF------------------------------------- 249
+ LR F + SAKV+
Sbjct: 360 IDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAE 419
Query: 250 -------ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+R G+S+GFGFV F +D A+ MN
Sbjct: 420 KKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMN 455
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPIASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGQPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + SRG+GFV FET + + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHDAAERAIEKMNGML 162
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F++ G S ++ D + RGFGFV+ + E+
Sbjct: 185 ARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDE-SGGGRGFGFVSFENHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKI 218
A++A+ +G ++ GR + V E+ R E+ M YQG +
Sbjct: 244 AQKAVDEMNGKELNGRIMFVGRAQKKMERQMELKRRFEQ--MKQDRTTRYQGV-----NL 296
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MN
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 279 GVV 281
G +
Sbjct: 355 GRI 357
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + SRG+GFV + + A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHDAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAREFTN----VYIKNFGEDMDDEKLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F S +V+ + +G RGFGFV+FE ED Q A+D MNG
Sbjct: 210 IFSKFGNATSVRVMTDE-SGGGRGFGFVSFENHEDAQKAVDEMNG 253
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ G++ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKV 186
+ +G + + + V
Sbjct: 350 VTEMNGRIVATKPLYV 365
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 162
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-GGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 16/171 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A
Sbjct: 43 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 102
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + I G+ ++ + + P L+ + QG ++ NL + ++
Sbjct: 103 LEDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIKNLDNAIDNK 147
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + S+G+GFV +ETAE +A+ +NG++
Sbjct: 148 ALHDTFAAFGNILSCKVAQDEFA-NSKGYGFVHYETAEAANNAIKHVNGML 197
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 135 VFIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFAN-SKGYGFVHYETAEAANNAIKHV 193
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + IY N+ +T R
Sbjct: 194 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----IYIKNIDLEITDDEFRV 244
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ G +++ + G+SRGFGFV + E ++A+ MN
Sbjct: 245 MFEAF-GEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMN 287
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ +T +F G + SA + +D+ +SRGFGFV + E A+ A+
Sbjct: 228 IYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQ-DGKSRGFGFVNYANHESAEAAVAEM 286
Query: 175 DGSQIGGRTVKVNFPEVPRGGERA--------AMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ ++ +T K+ + ER A + + YQG +Y NL
Sbjct: 287 NEKEV--KTQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGV-----NLYVKNLTDD 339
Query: 227 LTSQGLRDAFQGQPGLLSAKVI 248
+ + LRD F + SAKV+
Sbjct: 340 IDDEKLRDLFTPYGTITSAKVM 361
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A LYVG+L S+ + L +VF++ G V S + D + +S G+ +V + +A A+
Sbjct: 34 ATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARAL 93
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
L + + I G+ +++ + ++ G I+ NL + ++
Sbjct: 94 ELLNFTPINGKPIRIMYSNRDPSSRKSGTG---------------NIFIKNLDKSIDNKA 138
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS K+ + +G SRG+GFV FE E QSA+D +NG++
Sbjct: 139 LYDTFCAFGNILSCKIATDP-SGESRGYGFVQFEKDESAQSAIDKLNGML 187
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 7/185 (3%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
V +++ V+++ + + +YV NL ++T L E+F + GT+ SA ++ D +SR FG
Sbjct: 199 VRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDS-DGKSRCFG 257
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGER-AAMGPKLQNSYQGFVDSPH 216
FV + + A +A++ +G + + V + ER + K + + Q +
Sbjct: 258 FVNFENADAAAQAVQELNGKIFNDKELYVG--RAQKKSEREMELKEKFEKNVQEVAEKFQ 315
Query: 217 --KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+Y NL + + LR+ F + S KV+ + G SRG GFV F++AED AL
Sbjct: 316 NTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDS-NGVSRGSGFVAFKSAEDANRAL 374
Query: 275 DAMNG 279
MNG
Sbjct: 375 TEMNG 379
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F G + S +I D + SRG+GFV E A+ AI
Sbjct: 125 IFIKNLDKSIDNKALYDTFCAFGNILSCKIATD-PSGESRGYGFVQFEKDESAQSAIDKL 183
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK---IYAGNLGWGLTSQG 231
+G I + V V GP ++ + V S K +Y NL +T
Sbjct: 184 NGMLINDKKVFV--------------GPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDE 229
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L++ F G+ G +++ V+ G+SR FGFV FE A+ A+ +NG +
Sbjct: 230 LKEMF-GKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKI 278
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 81 SQDEPETEQEEEEE-EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTV 139
+Q + E E E +E+ E+ V+E VA + LY+ NL ++ L E+FAE G +
Sbjct: 289 AQKKSEREMELKEKFEKNVQE-----VAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNI 343
Query: 140 ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
S +++ D SRG GFV S E+A A+ +G +G + + V
Sbjct: 344 TSCKVMRDS-NGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYV 389
>gi|15221031|ref|NP_175810.1| oligouridylate-binding protein 1A [Arabidopsis thaliana]
gi|4587549|gb|AAD25780.1|AC006577_16 Similar to gb|U55861 RNA binding protein nucleolysin (TIAR) from
Mus musculus and contains several PF|00076 RNA
recognition motif domains. ESTs gb|T21032 and gb|T44127
come from this gene [Arabidopsis thaliana]
gi|13194792|gb|AAK15558.1|AF348587_1 putative oligouridylate binding protein [Arabidopsis thaliana]
gi|13605627|gb|AAK32807.1|AF361639_1 At1g54080/F15I1_16 [Arabidopsis thaliana]
gi|22137190|gb|AAM91440.1| At1g54080/F15I1_16 [Arabidopsis thaliana]
gi|332194924|gb|AEE33045.1| oligouridylate-binding protein 1A [Arabidopsis thaliana]
Length = 426
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 18/165 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y GN+ +T L E+FA G + S +++ D+S +GFV A AI
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRK---DKS-SYGFVHYFDRRCASMAIMTL 120
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G I G+ +KVN+ A G + S S I+ G+L +T L D
Sbjct: 121 NGRHIFGQPMKVNWA--------YATGQREDTS------SHFNIFVGDLSPEVTDAALFD 166
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+F A+V++++ TGRSRGFGFV+F +D Q+A++ MNG
Sbjct: 167 SFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 211
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 36/189 (19%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T ++L + F+ + + A +++D+ T RSRGFGFV+ + ++A+ AI
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 175 DGSQIGGRTVKVNFP-------------------EVPRGGERAAMGPKLQNSYQGFVDSP 215
+G + R ++ N+ E+ G G +L N D+P
Sbjct: 210 NGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSED--GRELSNE-----DAP 262
Query: 216 HK------IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
+Y GNL +T L F L A VI E R +GFGFV + T ++
Sbjct: 263 ENNPQFTTVYVGNLSPEVTQLDLHRLFY----TLGAGVIEEVRVQRDKGFGFVRYNTHDE 318
Query: 270 LQSALDAMN 278
A+ N
Sbjct: 319 AALAIQMGN 327
>gi|159476562|ref|XP_001696380.1| nuclear pre-mRNA splicing factor, component of splicing factor 3b
[Chlamydomonas reinhardtii]
gi|158282605|gb|EDP08357.1| nuclear pre-mRNA splicing factor, component of splicing factor 3b
[Chlamydomonas reinhardtii]
Length = 396
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 17/171 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
++ A +YVGNL T + E+F +AG V + + DRVT+ +G+GFV E+A
Sbjct: 28 NQEATVYVGNLDVQTTEELVWELFTQAGPVVNVYMPKDRVTNAHQGYGFVEFKGEEDADY 87
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI++ + ++ G+ ++VN + + +A +G L + GNL +
Sbjct: 88 AIKVLNMVKVYGKAIRVN--KASQDKRQADVGANL--------------FIGNLDPDVDE 131
Query: 230 QGLRDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ L D F +++ K++ + TG SRGFGFV+++ E +A++AMNG
Sbjct: 132 KLLYDTFSAFGVIVNTPKIMRDPDTGNSRGFGFVSYDCFEASDAAIEAMNG 182
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASA-EIVYDRVTDRSRGFGFVTMGSVEEA 167
+D A L++GNL + L + F+ G + + +I+ D T SRGFGFV+ E +
Sbjct: 114 ADVGANLFIGNLDPDVDEKLLYDTFSAFGVIVNTPKIMRDPDTGNSRGFGFVSYDCFEAS 173
Query: 168 KEAIRLFDGSQIGGRTVKVNF 188
AI +G + R + V++
Sbjct: 174 DAAIEAMNGQYLCNRAITVSY 194
>gi|340502094|gb|EGR28811.1| splicing factor subunit 4, putative [Ichthyophthirius multifiliis]
Length = 267
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG + +T L E+F++ G V + + D++T +G+GFV S E+A +I+
Sbjct: 12 ATIYVGGIDQKVTQEVLWELFSQCGIVVNVHLPKDKITGEHQGYGFVEFKSEEDADYSIK 71
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ ++ G+ +KVN +A+ + Q + I+ GNL +T Q L
Sbjct: 72 IMHLVKLYGKPIKVN---------KASQDKRTQ-------EVGANIFIGNLDQSITEQQL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F ++S +++ + S+G+ FV+++ E +A++ MNG
Sbjct: 116 HDTFSQFGLIISRRIVRDPDNDESKGYAFVSYDNFEAADAAINTMNG 162
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +++GNL S+T L + F++ G + S IV D D S+G+ FV+ + E A AI
Sbjct: 99 ANIFIGNLDQSITEQQLHDTFSQFGLIISRRIVRDPDNDESKGYAFVSYDNFEAADAAIN 158
Query: 173 LFDGSQIGGRTVKVNFP-EVPRGGER---------AAMGPKLQNSYQG 210
+G G + + V + + GER AA P+ QN+ G
Sbjct: 159 TMNGQFFGSKKINVQYAFKKDSKGERHGSAAERLLAANKPQQQNTVVG 206
>gi|443724444|gb|ELU12456.1| hypothetical protein CAPTEDRAFT_172701 [Capitella teleta]
Length = 359
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 20/198 (10%)
Query: 84 EPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
E T Q+ E AV+ + D L V LP SMT + +F+ G V S +
Sbjct: 2 ETPTIQQNGGSESAVQVLQRD---MKDSKTNLIVNYLPQSMTQDDIRSLFSSIGEVESCK 58
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK 203
++ D+ T +S G+GFV E+A +AI +G ++ +T+KV+ V R + G
Sbjct: 59 LIRDKATGQSLGYGFVNYKRQEDASKAITSLNGLRLQNKTIKVS---VARPSSESIKGAN 115
Query: 204 LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263
L Y L +T L + F +++++++ ++ TG S+G GF+
Sbjct: 116 L--------------YISGLPKNMTQVDLENMFNHCGNIITSRILCDQNTGISKGVGFIR 161
Query: 264 FETAEDLQSALDAMNGVV 281
F+ + + A+ +NG +
Sbjct: 162 FDQRHEAERAIKMLNGTI 179
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S L+V NL + L ++F G V + ++V D T + +GFGFVTM + EE
Sbjct: 272 AVSGSGYCLFVYNLAPETEENVLWQLFGPFGAVQNVKVVRDYATLKCKGFGFVTMTNYEE 331
Query: 167 AKEAIRLFDGSQIGGRTVKVNF 188
A AI +G +G R ++V+F
Sbjct: 332 ALMAIHALNGIALGDRVLQVSF 353
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S + A LY+ LP +MT L +F G + ++ I+ D+ T S+G GF+ EA+
Sbjct: 110 SIKGANLYISGLPKNMTQVDLENMFNHCGNIITSRILCDQNTGISKGVGFIRFDQRHEAE 169
Query: 169 EAIRLFDGSQIGGRT--VKVNFPEVP 192
AI++ +G+ G T + V F + P
Sbjct: 170 RAIKMLNGTIPEGATDPITVKFAQHP 195
>gi|82621116|gb|ABB86246.1| DNA-binding protein-like [Solanum tuberosum]
Length = 423
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
S++ +++G+L M L FA+AG V S +++ ++ T +S +GF+ + E A
Sbjct: 74 GSEDNRTIWIGDLQQWMDEGYLHTCFAQAGEVISVKVIRNKQTGQSERYGFIEFNTHEAA 133
Query: 168 KEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
++ ++ ++G+ + + ++N+ G +RA +G + S I+ G+L
Sbjct: 134 EKVLQSYNGTMMPNAEQPFRLNWSAFSTGEKRADVGAAAGSG------SDLSIFVGDLAS 187
Query: 226 GLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T LRD F + P + AKV+ + TGRS+G+GFV F+ + A+ MNG+
Sbjct: 188 DVTDTMLRDTFSSRYPSVKGAKVVIDSNTGRSKGYGFVRFDDESERSRAMTEMNGI 243
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 16/186 (8%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
A S ++VG+L +T + L + F+ +V A++V D T RS+G+GFV
Sbjct: 171 AAGSGSDLSIFVGDLASDVTDTMLRDTFSSRYPSVKGAKVVIDSNTGRSKGYGFVRFDDE 230
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNF--PEVPRG-------GERAAMGPKLQNSYQGFVDSP 215
E A+ +G R +++ P+ P G A+ G Q S S
Sbjct: 231 SERSRAMTEMNGIYCSSRAMRIGVATPKKPSAMQQYSSQGGHASNGAATQTSQTDSDLSN 290
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
++ G L +T + LR +F ++S K+ +G GFV F + A++
Sbjct: 291 TTVFVGGLDSDVTDEELRQSFSQFGNVVSVKIP------AGKGCGFVQFSERSAAEDAIE 344
Query: 276 AMNGVV 281
+NG V
Sbjct: 345 KLNGTV 350
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L +T L + F++ G V S +I +G GFV A++AI
Sbjct: 293 VFVGGLDSDVTDEELRQSFSQFGNVVSVKI------PAGKGCGFVQFSERSAAEDAIEKL 346
Query: 175 DGSQIGGRTVKVNFPEVPRGGE-RAAMGPKLQNSYQG 210
+G+ IG +TV++++ P + R G + Y G
Sbjct: 347 NGTVIGTQTVRLSWGRNPANKQFRTDSGSQWNGGYYG 383
>gi|310790913|gb|EFQ26446.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 474
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 10/204 (4%)
Query: 86 ETEQEEEEEEEAVEEEEEP-------KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGT 138
ETE + EE + + ++P + SD+++ L+VG+L +++ +SL E F E
Sbjct: 193 ETEAKTEEPSKKRKALDDPVIPGKKARTDVSDKSSTLFVGSLAWAVDDNSLYEAFQEFAD 252
Query: 139 VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP-EVPRGGER 197
+ A +V D+ T RSRGFG+V + E A A+ G ++ GR + ++F + P G
Sbjct: 253 LTGARVVTDKATGRSRGFGYVDFATPEAAAAALEGSQGRELAGRAMNIDFSGQKPAGDGN 312
Query: 198 AAMGPKLQNSYQGFVDSPHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 255
+ G SP ++ GNL + + + F + S ++ + TG
Sbjct: 313 HQARASDRAQRHGDTVSPESDTLFVGNLPFDVDQDTVNAFFSTAAEVTSVRLPTDPETGN 372
Query: 256 SRGFGFVTFETAEDLQSALDAMNG 279
+GFG+V+F + +D ++A +NG
Sbjct: 373 LKGFGYVSFNSIDDAKTAFAQLNG 396
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGNLP+ + ++ F+ A V S + D T +GFG+V+ S+++AK
Sbjct: 329 SPESDTLFVGNLPFDVDQDTVNAFFSTAAEVTSVRLPTDPETGNLKGFGYVSFNSIDDAK 388
Query: 169 EAIRLFDGSQIG----GRTVKVNF 188
A +G +G GR V+++F
Sbjct: 389 TAFAQLNGQYVGEGRSGRAVRLDF 412
>gi|120613408|ref|YP_973086.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120591872|gb|ABM35312.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 176
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 52/74 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ + L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDGSQIGGRTVKVN 187
+G +GGR++ VN
Sbjct: 64 MNGQALGGRSIVVN 77
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + + L AF + SAKV+ ER TGRS+GFGFV + + Q+A++
Sbjct: 3 NKLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 276 AMNG 279
MNG
Sbjct: 63 GMNG 66
>gi|50294199|ref|XP_449511.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528825|emb|CAG62487.1| unnamed protein product [Candida glabrata]
Length = 513
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 29/192 (15%)
Query: 84 EPE--TEQEEEEEEEAVEEEEEPKVAA--SDEAARLYVGNLPYSMTSSSLAEVFAEAGTV 139
EP+ + + E+ E++EE +V A S E ++++G L + T L E F++ G V
Sbjct: 97 EPQVSNQTQNSEQRESIEEANRRQVKADLSRENCKMFIGGLNWETTEDGLREYFSKYGNV 156
Query: 140 ASAEIVYDRVTDRSRGFGFVTM---GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
+I+ D T RSRGFGF++ SV+E + + DG I + +PR +
Sbjct: 157 VELKIMKDPNTGRSRGFGFLSFDAPSSVDEVVKTQHILDGKVIDPKRA------IPREEQ 210
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
D KI+ G LG + + + F ++ A+++ ++ TGRS
Sbjct: 211 ----------------DKTGKIFVGGLGTDVRPKEFEEYFSQWGTIIDAQLMLDKDTGRS 254
Query: 257 RGFGFVTFETAE 268
RGFGFVT+++ +
Sbjct: 255 RGFGFVTYDSPD 266
>gi|84453184|dbj|BAE71189.1| putative DNA binding protein [Trifolium pratense]
Length = 253
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+DE L++G+L Y M + L + F+ G V + +++ ++ T++S G+GF+ S A
Sbjct: 63 TADEVRTLWIGDLQYWMDENYLYQCFSHTGEVGNVKVIRNKQTNQSEGYGFLEFTSRAGA 122
Query: 168 KEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH-KIYAGNLG 224
+ ++ ++G+ + GG+ ++N+ G +R DSP I+ G+L
Sbjct: 123 ERILQQYNGNIMPNGGQNFRLNWATFSSGEKRHD-------------DSPDFTIFVGDLA 169
Query: 225 WGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+T L + F+ + + AKV+ +R TGR++G+GFV F + A+ M GV+
Sbjct: 170 ADVTDYHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADEGEQMRAMSEMQGVL 227
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L EVF +V A++V DR T R++G+GFV E A+
Sbjct: 163 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADEGEQMRAMSE 222
Query: 174 FDGSQIGGRTVKV 186
G R +++
Sbjct: 223 MQGVLCSTRPMRI 235
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG L +T + L E+F G VAS + D VT RS G+ +V + + + A+
Sbjct: 76 LYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALDQL 135
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ SQI G+ ++ + + P L+ + QG I+ NL G+ ++ L D
Sbjct: 136 NYSQIRGKPCRIMW---------SQRDPGLRKTGQG------NIFIKNLDQGIDNKALHD 180
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G S+G+GFV +++ E ++A+ A+NG++
Sbjct: 181 TFAAFGTVLSCKVATDD-SGLSKGYGFVHYDSNEAAEAAIKAVNGML 226
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + + +L + FA GTV S ++ D + S+G+GFV S E A+ AI+
Sbjct: 164 IFIKNLDQGIDNKALHDTFAAFGTVLSCKVATDD-SGLSKGYGFVHYDSNEAAEAAIKAV 222
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + R K+ F + +Y NL + +
Sbjct: 223 NGMLLNDKKVFVG-----QHISRKERQSKIDEMKSHFTN----LYVKNLDTEVGEEEFEG 273
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F Q G +++ VI + G S+GFGFV FE ED Q A++ ++
Sbjct: 274 LFS-QFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVEELD 316
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 13/173 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL + +F++ G + SA I D + S+GFGFV + E+A+ A+
Sbjct: 257 LYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGN-SKGFGFVNFENHEDAQRAVEEL 315
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPHK-----IYAGNLGWGLT 228
D +I G+ V V R +++ +L+ Y Q + K +Y NL +
Sbjct: 316 DNKEIHGKPVFVG-----RAQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVD 370
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ LR F+ + S KV+ + G S+GFGFV F + ++ A+ MN +
Sbjct: 371 DEKLRAEFEPFGTITSCKVMRDE-KGTSKGFGFVCFSSPDEATRAMSEMNNKI 422
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE ++ E+ K A + + LY+ NL + L F GT+ S +++
Sbjct: 331 QKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVM 390
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D S+GFGFV S +EA A+ + +G + + V
Sbjct: 391 RDE-KGTSKGFGFVCFSSPDEATRAMSEMNNKIVGTKPLYV 430
>gi|408399266|gb|EKJ78389.1| hypothetical protein FPSE_01494 [Fusarium pseudograminearum CS3096]
Length = 498
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 99/200 (49%), Gaps = 7/200 (3%)
Query: 83 DEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASA 142
+EP +++ E++ +A + K A SDE L+ G+L +S+ ++L E F +A+A
Sbjct: 210 EEPSKKRKAEDDGDA-----DAKKAKSDEPTTLFAGSLSWSIDDNALYEAFKHIEGLANA 264
Query: 143 EIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGP 202
++ ++ T RSRGFG+V +A +G+++ GR + +++ A
Sbjct: 265 RVMTEKGTGRSRGFGYVDFNDAASCTKAYETMNGTELEGRAINLDYANARPAEANPAARA 324
Query: 203 KLQNSYQGFVDSPHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFG 260
+ G SP ++ GNL + + +R F+ + S ++ + +G +GFG
Sbjct: 325 ADRAQRHGDTVSPESDTLFVGNLPFDVDQDSVRAFFEEVAAVASVRLPTDPDSGNLKGFG 384
Query: 261 FVTFETAEDLQSALDAMNGV 280
+V+F + E+ + +A NG
Sbjct: 385 YVSFSSVEEAKQVFEAKNGA 404
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGNLP+ + S+ F E VAS + D + +GFG+V+ SVEEAK
Sbjct: 336 SPESDTLFVGNLPFDVDQDSVRAFFEEVAAVASVRLPTDPDSGNLKGFGYVSFSSVEEAK 395
Query: 169 EAIRLFDGSQIGG----RTVKVNF 188
+ +G+ IG R V++++
Sbjct: 396 QVFEAKNGAPIGNGRMSRAVRLDY 419
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + +SRGFGFV+ E+
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTD-PSGKSRGFGFVSYEKHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYA 220
A +A+ +G+++ G+TV V + + R E +L+ + YQG +Y
Sbjct: 244 ANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGV-----NLYI 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL + + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVVKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + S+G+ FV FET + A++ MNG++
Sbjct: 116 YDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGML 162
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 12/166 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + + A AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGAKAKEFTN----VYIKNFGDDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F LS KV+ + +G+SRGFGFV++E ED A++ MNG
Sbjct: 210 IFDKYGKTLSVKVMTDP-SGKSRGFGFVSYEKHEDANKAVEEMNGT 254
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G +G + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 382
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 18/177 (10%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
+P AS A LYVG+L +T L + F+ ++AS I D T RS +G+V
Sbjct: 6 QPTAHAS--PASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFI 63
Query: 163 SVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGN 222
S ++A AI + + S + GR ++V + ++ +G ++ N
Sbjct: 64 SPQDATNAIEVMNHSMLNGRAIRVMWSRRDADARKSGIG---------------NVFVKN 108
Query: 223 LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + S GL++ F+ +LS+KV G+S+G+GFV FE+ E +A++++NG
Sbjct: 109 LSDSINSLGLQELFKKFGNVLSSKVATSD-DGKSKGYGFVQFESEESANAAIESLNG 164
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ S L E+F + G V S+++ +S+G+GFV S E A AI
Sbjct: 104 VFVKNLSDSINSLGLQELFKKFGNVLSSKVATSD-DGKSKGYGFVQFESEESANAAIESL 162
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +G + + V + R +R P ++ + +Y NL + + L++
Sbjct: 163 NGFTVGDKQIYVG--KFVRKSDRVLANPDIKYT---------NLYVKNLDPEIGEEHLQE 211
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + G +S+ +I G SRGFGF+ FE ++D + AL+ +NG
Sbjct: 212 KF-SEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLNG 255
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 13/173 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL + L E F+E G ++S I D SRGFGF+ + ++AK A+
Sbjct: 195 LYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDE-NGVSRGFGFINFENSDDAKRALETL 253
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY------QGFVDSPHKIYAGNLGWGLT 228
+GSQ+G + + + R ++ L+ Y Q +Y N+ +T
Sbjct: 254 NGSQLGSKVI-----YIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVT 308
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
+ LR+ F Q G +++ + G ++GFGFV F ++ + A++ + G +
Sbjct: 309 DEELRERF-SQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCM 360
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 89 QEEEEEEEAVEEEEEPKV---AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
Q++ E EE + E K + + +YV N+ +T L E F++ GT+ S++++
Sbjct: 269 QKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDEELRERFSQFGTITSSKLM 328
Query: 146 YDRVTDR--SRGFGFVTMGSVEEAKEAIRLFDGSQIGGR 182
D D+ ++GFGFV + +EAK A+ G G+
Sbjct: 329 RD---DKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGK 364
>gi|406907930|gb|EKD48603.1| RNA-binding protein [uncultured bacterium]
Length = 100
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLPYS+T SL E+F + G V+S ++V D+++ RS+GF FV M + EE + AI
Sbjct: 3 IYVGNLPYSITEDSLRELFEQFGDVSSTKVVVDQISGRSKGFAFVDMSNDEEGEAAIEKL 62
Query: 175 DGSQIGGRTVKVN--FPEVPR 193
+G ++ GRT+ VN P PR
Sbjct: 63 NGHELDGRTIVVNKAKPRAPR 83
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
IY GNL + +T LR+ F+ + S KV+ ++ +GRS+GF FV E+ ++A++ +
Sbjct: 3 IYVGNLPYSITEDSLRELFEQFGDVSSTKVVVDQISGRSKGFAFVDMSNDEEGEAAIEKL 62
Query: 278 NG 279
NG
Sbjct: 63 NG 64
>gi|34534595|dbj|BAC87055.1| unnamed protein product [Homo sapiens]
Length = 603
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 375 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 430
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GR +++ + PRG A P ++ L T
Sbjct: 431 EALNSCNKREIEGRAIRLEL-QGPRGSPNARSQP------------SKTLFVKGLSEDTT 477
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 478 EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 523
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 34/178 (19%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A L NLPY +T L EVF +A AEI S+G ++ + +A++
Sbjct: 284 DARTLLAKNLPYKVTQDELKEVFEDA-----AEIRLVSKDGNSKGIAYIEFKTEADAEKT 338
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-SYQGFVDS-----PHKIYAGNLG 224
G++I GR++ + + G K QN Y+G +S + NL
Sbjct: 339 FEEKQGTEIDGRSISLYY-----------TGEKGQNQDYRGGKNSTWSGESKTLVLSNLS 387
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ T + L++ F+ K F + G+S+G+ F+ F + ED + AL++ N
Sbjct: 388 YSATEETLQEVFE--------KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 437
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 459 ARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEED 515
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 516 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 542
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V + + ++A+
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + G I+ NL + ++
Sbjct: 119 EELNYTLIKGRPCRIMWSQ---------RDPALRKTGAG------NIFIKNLDAAIDNKA 163
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ET E A+ +NG++
Sbjct: 164 LHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGML 212
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A +AI
Sbjct: 147 AGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAASQAI 205
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ +G + + V V +P+ ++ K + F + +Y N+ +T +
Sbjct: 206 KHVNGMLLNEKKVYVGH-HIPKKDRQS----KFEEMKANFTN----VYVKNINNEVTDEE 256
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
R+ F + G +++ + G+SRGFGFV F T E A+D +NG
Sbjct: 257 FRELF-AKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNG 303
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 83/212 (39%), Gaps = 56/212 (26%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T E+FA+ G V S+ + D+ +SRGFGFV + E A +A+
Sbjct: 243 VYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQ-EGKSRGFGFVNFTTHEAAAQAVDEL 301
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+G G+ + V E+ + E A + + N YQG +Y NLG
Sbjct: 302 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARL--EKANKYQGV-----NLYIKNLGDD 354
Query: 227 LTSQGLRDAFQGQPGLLSAKVIF------------------------------------- 249
+ LR F + SAKV+
Sbjct: 355 VDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTE 414
Query: 250 ---ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+R G+S+GFGFV F +D A+ MN
Sbjct: 415 KKGDRKLGKSKGFGFVCFSNPDDATKAVTEMN 446
>gi|345790650|ref|XP_850477.2| PREDICTED: nucleolin isoform 1 [Canis lupus familiaris]
Length = 715
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 487 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 542
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GR +++ + PRG A P ++ L T
Sbjct: 543 EALNSCNKREIEGRAIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 589
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 590 EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 635
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 35/189 (18%)
Query: 102 EEPKVAAS--DEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
E+PK S D AR L NLPY +T L EVF +A EI +S+G +
Sbjct: 384 EKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA-----VEIRLVSKDGKSKGIAY 438
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDS---- 214
+ + +A++ G++I GR++ + + GE+ Y+G +S
Sbjct: 439 IEFKTEADAEKTFEEKQGTEIDGRSISLYY-----TGEKGQ-----SQDYRGGKNSTWSG 488
Query: 215 -PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAED 269
+ NL + T + L++ F+ K F + G+S+G+ F+ F + ED
Sbjct: 489 ESKTLVLSNLSYSATEETLQEVFE--------KATFIKVPQNQNGKSKGYAFIEFASFED 540
Query: 270 LQSALDAMN 278
+ AL++ N
Sbjct: 541 AKEALNSCN 549
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 571 ARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEED 627
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 628 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 654
>gi|187097098|ref|NP_001119609.1| sex-lethal [Acyrthosiphon pisum]
gi|98986311|tpe|CAJ55783.1| TPA: sex-lethal [Acyrthosiphon pisum]
gi|239792967|dbj|BAH72757.1| ACYPI000005 [Acyrthosiphon pisum]
Length = 205
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L + LP SMT L ++F + G + + ++ D T S GFGFV E+A +AI +
Sbjct: 11 LIINYLPQSMTDKKLHQMFTQIGQIEACRVMKDVKTGYSFGFGFVNFVRPEDASKAIEVM 70
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G Q+ + +KV++ R A G ++++ +Y NL +T + L D
Sbjct: 71 NGLQVENKRLKVSYA-------RPA-GEDIKDT---------NLYVQNLPRSITERELED 113
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F ++ ++ ++Y+G RG FV + ED Q A+ +NGV+
Sbjct: 114 LFAPYGQIVQKNILKDKYSGLPRGVAFVRYNKKEDAQKAIIQLNGVL 160
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 5/185 (2%)
Query: 23 AITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQ 82
++T + N+LP K + + Q + + + Y F F F ED+
Sbjct: 7 SMTNLIINYLPQSMTDKKLHQMFTQIGQIEACRVMKDVKTGY--SFGFGFVNFVRPEDAS 64
Query: 83 DEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASA 142
E + E + ++ + LYV NLP S+T L ++FA G +
Sbjct: 65 KAIEVMNGLQVENKRLKVSYARPAGEDIKDTNLYVQNLPRSITERELEDLFAPYGQIVQK 124
Query: 143 EIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT--VKVNFPEVPRGGERAAM 200
I+ D+ + RG FV E+A++AI +G + G T + V E G ++AA
Sbjct: 125 NILKDKYSGLPRGVAFVRYNKKEDAQKAIIQLNGVLLEGCTEHLSVKIAE-EHGKQKAAY 183
Query: 201 GPKLQ 205
LQ
Sbjct: 184 LAGLQ 188
>gi|392579826|gb|EIW72953.1| hypothetical protein TREMEDRAFT_72942 [Tremella mesenterica DSM
1558]
Length = 475
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 8/169 (4%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L +++ + LA F G V A +++D +S+GFGFV + EEA +A+
Sbjct: 212 ANVYVGGLSWNVDNEWLASEFQSCGEVVEARVMFDHQNQKSKGFGFVRFKTAEEAAKAVA 271
Query: 173 LFDGSQIGGRTVKVNFP--EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G +I GR ++ +F + ER A Q S +Y G L + L
Sbjct: 272 MT-GHEIDGRAIRCDFAAEKTDNPVERRAQKFNDQRSAPAAT-----LYLGGLSYDLNED 325
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ +AF + + +R TG +GFG+V F + +AL+AMNG
Sbjct: 326 AVYEAFGDFGDIQRVSLPTDRETGAPKGFGYVEFADVDQATAALEAMNG 374
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
AA LY+G L Y + ++ E F + G + + DR T +GFG+V V++A A+
Sbjct: 310 AATLYLGGLSYDLNEDAVYEAFGDFGDIQRVSLPTDRETGAPKGFGYVEFADVDQATAAL 369
Query: 172 RLFDGSQIGGRTVKVNF 188
+G ++ GR ++V++
Sbjct: 370 EAMNGKELSGRRIRVDY 386
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 193 RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY 252
R ++ A P ++ G + +Y G L W + ++ L FQ ++ A+V+F+
Sbjct: 189 RKADQEAQAPAKKSRTDGEAEPTANVYVGGLSWNVDNEWLASEFQSCGEVVEARVMFDHQ 248
Query: 253 TGRSRGFGFVTFETAEDLQSALDAMNG 279
+S+GFGFV F+TAE+ A+ AM G
Sbjct: 249 NQKSKGFGFVRFKTAEEAAKAV-AMTG 274
>gi|18423684|ref|NP_568815.1| RNA-binding protein 45A [Arabidopsis thaliana]
gi|75334165|sp|Q9FPJ8.1|RB45A_ARATH RecName: Full=Polyadenylate-binding protein RBP45A;
Short=Poly(A)-binding protein RBP45A; AltName:
Full=RNA-binding protein 45A; Short=AtRBP45A
gi|11762114|gb|AAG40335.1|AF324983_1 AT5g54900 [Arabidopsis thaliana]
gi|119360145|gb|ABL66801.1| At5g54900 [Arabidopsis thaliana]
gi|332009171|gb|AED96554.1| RNA-binding protein 45A [Arabidopsis thaliana]
Length = 387
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 93/177 (52%), Gaps = 16/177 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++ + L++G+L M + + VFA++G SA+++ +++T +S G+GF+ S
Sbjct: 54 GSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSV 113
Query: 167 AKEAIRLFDGSQIGG--RTVKVNFPEVPRGGER-AAMGPKLQNSYQGFVDSPHKIYAGNL 223
A+ ++ ++G+ + +T ++N+ + G +R GP H I+ G+L
Sbjct: 114 AERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPD------------HTIFVGDL 161
Query: 224 GWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+T L D F+ G + AKV+ +R TGRS+G+GFV F + A+ MNG
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNG 218
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L++ F G+V A++V DR T RS+G+GFV E A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERA-AMGPKLQNSYQGFV---DSPHK--IYAGNLGWGL 227
+G R +++ P + A M P + + QG + P+ I+ G L +
Sbjct: 216 MNGQYCSTRPMRIG----PAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANV 271
Query: 228 TSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L+ F GQ G LL K+ + GFV + + AL +NG
Sbjct: 272 TDDELKSIF-GQFGELLHVKIP------PGKRCGFVQYANKASAEHALSVLNGT 318
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L ++T L +F + G E+++ ++ R GFV + A+ A+ +
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFG-----ELLHVKIPPGKR-CGFVQYANKASAEHALSVL 315
Query: 175 DGSQIGGRTVKVNFPEVP---------RGGERAAMGPKLQNSYQGFVDSP 215
+G+Q+GG+++++++ P GG P+ Q Y G+ P
Sbjct: 316 NGTQLGGQSIRLSWGRSPNKQSDQAQWNGGGYYGYPPQPQGGY-GYAAQP 364
>gi|365091634|ref|ZP_09328989.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363415945|gb|EHL23069.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 192
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 51/74 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAISG 63
Query: 174 FDGSQIGGRTVKVN 187
+G +GGR++ VN
Sbjct: 64 MNGQPLGGRSIVVN 77
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + + L AF + SAKV+ ER TGRS+GFGFV + + Q+A+
Sbjct: 3 NKLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIS 62
Query: 276 AMNG 279
MNG
Sbjct: 63 GMNG 66
>gi|194334049|ref|YP_002015909.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
gi|194311867|gb|ACF46262.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
Length = 90
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+GNL Y +T L E F E G V+SA I+ D+ T RS+GFGFV M S ++A EAI
Sbjct: 3 IYIGNLDYGVTEEDLREAFGEFGDVSSANIITDKFTGRSKGFGFVEMSSSDDANEAIESL 62
Query: 175 DGSQIGGRTVKVN 187
+ + + GRT+KVN
Sbjct: 63 NDTDLNGRTIKVN 75
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 43/62 (69%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
IY GNL +G+T + LR+AF + SA +I +++TGRS+GFGFV +++D A+++
Sbjct: 2 NIYIGNLDYGVTEEDLREAFGEFGDVSSANIITDKFTGRSKGFGFVEMSSSDDANEAIES 61
Query: 277 MN 278
+N
Sbjct: 62 LN 63
>gi|343961999|dbj|BAK62587.1| nucleolin [Pan troglodytes]
Length = 537
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 309 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 364
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GR +++ + PRG A P ++ L T
Sbjct: 365 EALNSCNKREIEGRAIRLEL-QGPRGSPNARSQP------------SKTLFVKGLSEDTT 411
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 412 EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 457
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 26/174 (14%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A L NLPY +T L EVF +A AEI +S+G ++ + +A++
Sbjct: 218 DAGTLLAKNLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKT 272
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-SYQGFVDS-----PHKIYAGNLG 224
G++I GR++ + + G K QN Y+G +S + NL
Sbjct: 273 FEEKQGTEIDGRSISLYY-----------TGEKGQNQDYRGGKNSTWSGESKTLVLSNLS 321
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ T + L++ F+ + + + G+S+G+ F+ F + ED + AL++ N
Sbjct: 322 YSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCN 371
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 393 ARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEED 449
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 450 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 476
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T S L ++F + G V S + D + RS G+G+V + ++A A+ +
Sbjct: 27 LYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEVL 86
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + G ++V + + P ++ S G I+ NL + + L D
Sbjct: 87 NFTPVNGSPIRVMY---------SHRDPSVRKSGAG------NIFIKNLDKAIDHKALHD 131
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
F +LS KV + +G+S+G+GFV F++ E Q A++ +NG++
Sbjct: 132 TFSVFGNILSCKVATDP-SGQSKGYGFVQFDSEEAAQKAIEKLNGML 177
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 14/179 (7%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
+P V S A +++ NL ++ +L + F+ G + S ++ D + +S+G+GFV
Sbjct: 102 HRDPSVRKSG-AGNIFIKNLDKAIDHKALHDTFSVFGNILSCKVATDP-SGQSKGYGFVQ 159
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYA 220
S E A++AI +G + + V V R ER K + + ++
Sbjct: 160 FDSEEAAQKAIEKLNGMLLNDKQVYVG--PFLRKQERDTATDKTRF---------NNVFV 208
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL + L AF G+ G +++ V+ G+SR FGFV FE A+D A +A+NG
Sbjct: 209 KNLSETTAEEDLNKAF-GEFGTITSVVVMRDGDGKSRCFGFVNFENADDAAKAAEALNG 266
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
+ +++ E E E + E+ A+D + A LY+ NL S+ + E+F+ GT+ S +
Sbjct: 278 KAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCK 337
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
++ D SRG GFV + EEA A+ +G + + + V
Sbjct: 338 VMRDP-NGISRGSGFVAFSTPEEASRALLEMNGKMVASKPLYV 379
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + L + F E GT+ S ++ D +SR FGFV + ++A +A
Sbjct: 206 VFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDG-DGKSRCFGFVNFENADDAAKAAEAL 264
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQG 231
+G + + V + + ER + + + S + D +Y NL + +
Sbjct: 265 NGKKFDDKEWFVG--KAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEK 322
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+++ F + S KV+ + G SRG GFV F T E+ AL MNG
Sbjct: 323 IKELFSPFGTITSCKVMRDP-NGISRGSGFVAFSTPEEASRALLEMNG 369
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V + + ++A+
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + G I+ NL + ++
Sbjct: 119 EELNYTLIKGRPCRIMWSQ---------RDPALRKTGAG------NIFIKNLDAAIDNKA 163
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + + G S+G+GFV +ET E A+ +NG++
Sbjct: 164 LHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGML 212
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A +AI
Sbjct: 147 AGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAASQAI 205
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ +G + + V V +P+ ++ K + F + +Y N+ +T +
Sbjct: 206 KHVNGMLLNEKKVYVGH-HIPKKDRQS----KFEEMKANFTN----VYVKNINNEVTDEE 256
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
R+ F + G +++ + G++RGFGFV F T E A+D +NG
Sbjct: 257 FRELF-AKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQAVDELNG 303
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 83/211 (39%), Gaps = 55/211 (26%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T E+FA+ G V S+ + D+ ++RGFGFV + E A +A+
Sbjct: 243 VYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQ-EGKTRGFGFVNFTTHEAAAQAVDEL 301
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+G G+ + V E+ + E A + + N YQG +Y NLG
Sbjct: 302 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARL--EKANKYQGV-----NLYIKNLGDD 354
Query: 227 LTSQGLRDAFQGQPGLLSAKVIF------------------------------------- 249
+ LR F + SAKV+
Sbjct: 355 VDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGEAEEEQKEGSEKKTEK 414
Query: 250 --ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+R G+S+GFGFV F +D A+ MN
Sbjct: 415 KGDRKLGKSKGFGFVCFSNPDDATKAVTEMN 445
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 11/174 (6%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
+ S++ L+VGNL ++T LA +F + G V A+I++D + F FV +
Sbjct: 32 SGSEDPRTLFVGNLDPAITDEFLATLFNQIGAVTKAKIIFDCFQGLNDPFAFVEFSDHNQ 91
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVP-RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
A +A++ +G Q+ R ++VN+ P + G+R P+ + FV G+L
Sbjct: 92 ASQALQSMNGRQLLEREMRVNWAVEPNQPGDRNK--PETSRHFHVFV--------GDLSA 141
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ S LR+AF + AK+I + T +++G+GFV++ ED + A++ MNG
Sbjct: 142 EIDSTKLREAFLPFGEVSEAKIIRDNATNKAKGYGFVSYPRREDAERAIEQMNG 195
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 29/186 (15%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L + S+ L E F G V+ A+I+ D T++++G+GFV+ E+A+ AI
Sbjct: 134 VFVGDLSAEIDSTKLREAFLPFGEVSEAKIIRDNATNKAKGYGFVSYPRREDAERAIEQM 193
Query: 175 DGSQIGGRTVKVNFP--------------EVPRGGERAAMGPKLQNSYQGFVDSPHK--- 217
+G +G RT++ N+ + G+R G + ++ D +
Sbjct: 194 NGQWLGRRTIRTNWATRKPEEEGGERRERDRNERGDRPHRGEGRHHHFEKTYDEVFREAA 253
Query: 218 -----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+Y GN+ LT +R F+ ++ ++ +S+G+ FV FE E
Sbjct: 254 ADNTSVYVGNIN-SLTEDEIRRGFERFGQIVEVRIF------KSQGYAFVKFEQKESAAR 306
Query: 273 ALDAMN 278
A+ MN
Sbjct: 307 AIVQMN 312
>gi|296083995|emb|CBI24383.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 10/187 (5%)
Query: 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR 148
+E + A + P V + +++V L + T+ +L F + G + +V D+
Sbjct: 188 KEAADSNPATLSKILPAVESDPVHRKIFVHGLGWDATNETLTSAFKQYGQIEECNVVTDK 247
Query: 149 VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+T RS+G+GFV + A++A++ +IG R + AA GP N
Sbjct: 248 ITGRSKGYGFVLFKTRSGARKALKQ-PQKKIGNRMAACHL---------AAAGPSGSNPA 297
Query: 209 QGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
G + ++Y GN+G ++++ LR F + + F++ TG+ RGF + F+TAE
Sbjct: 298 AGADVNERRLYVGNVGPQISAEKLRTFFAKFGEIEDGPLGFDKATGKFRGFAIIVFKTAE 357
Query: 269 DLQSALD 275
++ AL+
Sbjct: 358 GMKRALE 364
>gi|9758270|dbj|BAB08769.1| unnamed protein product [Arabidopsis thaliana]
Length = 390
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 93/177 (52%), Gaps = 16/177 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++ + L++G+L M + + VFA++G SA+++ +++T +S G+GF+ S
Sbjct: 54 GSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSV 113
Query: 167 AKEAIRLFDGSQIGG--RTVKVNFPEVPRGGER-AAMGPKLQNSYQGFVDSPHKIYAGNL 223
A+ ++ ++G+ + +T ++N+ + G +R GP H I+ G+L
Sbjct: 114 AERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPD------------HTIFVGDL 161
Query: 224 GWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+T L D F+ G + AKV+ +R TGRS+G+GFV F + A+ MNG
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNG 218
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L++ F G+V A++V DR T RS+G+GFV E A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERA-AMGPKLQNSYQGFV---DSPHK--IYAGNLGWGL 227
+G R +++ P + A M P + + QG + P+ I+ G L +
Sbjct: 216 MNGQYCSTRPMRIG----PAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANV 271
Query: 228 TSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L+ F GQ G LL K+ + GFV + + AL +NG
Sbjct: 272 TDDELKSIF-GQFGELLHVKIP------PGKRCGFVQYANKASAEHALSVLNGT 318
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L ++T L +F + G E+++ ++ R GFV + A+ A+ +
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFG-----ELLHVKIPPGKR-CGFVQYANKASAEHALSVL 315
Query: 175 DGSQIGGRTVKVNFPEVP---------RGGERAAMGPKLQNSYQGFVDSP 215
+G+Q+GG+++++++ P GG P+ Q Y G+ P
Sbjct: 316 NGTQLGGQSIRLSWGRSPNKQSDQAQWNGGGYYGYPPQPQGGY-GYAAQP 364
>gi|359806697|ref|NP_001241034.1| uncharacterized protein LOC100799124 [Glycine max]
gi|255645259|gb|ACU23127.1| unknown [Glycine max]
Length = 275
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ +S + +L++G + YS SL E F++ G V A I+ DR T RSRGFGF+T SV
Sbjct: 34 RCMSSAPSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSV 93
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFP-EVPR 193
EEA AI+ DG + GR ++VN+ E PR
Sbjct: 94 EEASSAIQALDGQDLHGRPIRVNYANERPR 123
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G + + Q LR+AF ++ A++I +R TGRSRGFGF+T+ + E+ SA+ A
Sbjct: 43 KLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQA 102
Query: 277 MNG 279
++G
Sbjct: 103 LDG 105
>gi|255730137|ref|XP_002549993.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131950|gb|EER31508.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 442
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 10/179 (5%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
K A +E A L+VG L +++ L F G V A ++ +R T +SRG+G+V
Sbjct: 207 KAATDEEPATLFVGRLSWNIDDDWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFEGK 266
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYA 220
A++A+ G +I GR + ++ P + +RA + +S D+ ++
Sbjct: 267 SFAEKALAEMQGKEIDGRPINLDMSTGKPHASKSNDRAK---QFGDSQSPPSDT---LFI 320
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GNL + GL + F ++S ++ T + +GFG+V F + ++ ++AL+A+NG
Sbjct: 321 GNLSFNANRDGLFNTFGEYGNVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNG 379
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ L F E G V S I T + +GFG+V SV+EAK A+
Sbjct: 318 LFIGNLSFNANRDGLFNTFGEYGNVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 377
Query: 175 DGSQIGGRTVKVNFPEVPR 193
+G I GR +++F PR
Sbjct: 378 NGQYIEGRPCRLDF-SAPR 395
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 15/187 (8%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+ E E + AS E +Y+ N M L +VF++ G S +++ D +S+GFGF
Sbjct: 303 DREAELRSKAS-EFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SRGKSKGFGF 360
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFV 212
V+ S E AK+A+ +G I G+ + V + V R E M +L+ YQG
Sbjct: 361 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGV- 419
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
K+Y NL + + LR+ F ++ KV+ + G+S+GFGF+ F + ED
Sbjct: 420 ----KLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVM--QQEGQSKGFGFICFSSLEDATK 473
Query: 273 ALDAMNG 279
A+ MNG
Sbjct: 474 AMIEMNG 480
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 17/180 (9%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+++E VAA A LYVG+L +T L F+ AG V S I D+VT RS G+ +V
Sbjct: 123 KDKEMSVAAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYV 182
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+ +A++A+ + I G+++++ + + R+ +G ++
Sbjct: 183 NFLQLTDAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIG---------------NVF 227
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL + ++ L + F G +LS+KV+ + S+G+ FV F+ A++ MNG
Sbjct: 228 IKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNG 285
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L E F+ G + S++++ D S+G+ FV + A AI
Sbjct: 226 VFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAI--- 280
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
++ GR +K V R R +L++ F + IY N G + + L+D
Sbjct: 281 --EEMNGRLLKSCKVFVGRFKNRKDREAELRSKASEFTN----IYIKNFGGDMDDERLKD 334
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + G+S+GFGFV+F++ E + A++ MNG
Sbjct: 335 VFSKYGKTLSVKVMTDS-RGKSKGFGFVSFDSHEAAKKAVEEMNG 378
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ +LYV NL ++ L F+ G++ +++ + +S+GFGF+ S+E+A +A
Sbjct: 417 QGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVM--QQEGQSKGFGFICFSSLEDATKA 474
Query: 171 IRLFDGSQIGGRTVKV 186
+ +G +G + + +
Sbjct: 475 MIEMNGRFLGSKPISI 490
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 16/182 (8%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
E + VA+S + LYVG+L + + L E F+ G V S + D +T RS G+ +V
Sbjct: 3 EMADKDVASSAKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYV 62
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
E+AK+A+ + + GR +++ + + R A G ++
Sbjct: 63 NFERPEDAKQALETMNFDIVHGRPIRIMWSQRRPSTSRVAAG---------------NVF 107
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL + S+ L + F ++S K+ + + +S+G+GFV FET E + A+D NG
Sbjct: 108 VKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQS-KSKGYGFVQFETEEAARKAIDGTNG 166
Query: 280 VV 281
V+
Sbjct: 167 VI 168
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V N + L ++FA+ G + S + D + GFGFV + ++A++A++
Sbjct: 199 VFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDG-DGKPNGFGFVAFENPDDAEKAVKDM 257
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ G K+ + ER A +L YQ + K Y G NL +
Sbjct: 258 QDYHLPGSDRKLYVSRFQKKCERLA---ELDRKYQLEKNERAKRYEGANLYLKNLDDAID 314
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR +F ++SAKV+ GRS+GFGFV F+ ++ A+ AM G
Sbjct: 315 DDMLRRSFGEYGNVISAKVM-RSDDGRSKGFGFVCFDKPDEAVKAMTAMKG 364
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 11/166 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A ++V NL S+ S +L F+ G + S ++ D + +S+G+GFV + E A++AI
Sbjct: 103 AGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQS-KSKGYGFVQFETEEAARKAI 161
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G G+ + V ER+ + N + ++ N L +
Sbjct: 162 DGTNGVIFEGKRIYVG--RFQSRSERSEQAKRTTNCFTN-------VFVKNFADILDKEK 212
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
L+ F ++S V + G+ GFGFV FE +D + A+ M
Sbjct: 213 LQQLFAKFGKIVSCAVSVDG-DGKPNGFGFVAFENPDDAEKAVKDM 257
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVT 160
E+ + A E A LY+ NL ++ L F E G V SA+++ R D RS+GFGFV
Sbjct: 291 EKNERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVM--RSDDGRSKGFGFVC 348
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
+EA +A+ G + + + V+ +
Sbjct: 349 FDKPDEAVKAMTAMKGKMVCTKPLYVSMAQ 378
>gi|255713222|ref|XP_002552893.1| KLTH0D03916p [Lachancea thermotolerans]
gi|238934273|emb|CAR22455.1| KLTH0D03916p [Lachancea thermotolerans CBS 6340]
Length = 505
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 93/184 (50%), Gaps = 10/184 (5%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
E ++ K ++ E A ++VG L +S+ L F G V SA ++ +R TDRSRG+G+V
Sbjct: 243 ESKKAKTESNGEPATIFVGRLSWSVDDEWLKTEFEPIGGVISARVIMERGTDRSRGYGYV 302
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK-- 217
+ A++A++ G +I GR + + + A P+ + Q F D+P +
Sbjct: 303 DFENKFYAEKAVKEMHGKEIDGRPINCDM-----STSKPAGNPRNDRAKQ-FGDTPSQPS 356
Query: 218 --IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
++ GNL + + + F ++S ++ T + +GFG+V + + ++ Q A +
Sbjct: 357 DTLFLGNLSFNADRDNIFETFAEHGEVVSVRLPTHPETNQPKGFGYVQYSSVDEAQKAFE 416
Query: 276 AMNG 279
A+ G
Sbjct: 417 ALQG 420
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ ++ E FAE G V S + T++ +GFG+V SV+EA++A
Sbjct: 359 LFLGNLSFNADRDNIFETFAEHGEVVSVRLPTHPETNQPKGFGYVQYSSVDEAQKAFEAL 418
Query: 175 DGSQIGGRTVKVNF 188
G I R V+++F
Sbjct: 419 QGHYIDNRPVRLDF 432
>gi|119591368|gb|EAW70962.1| nucleolin, isoform CRA_c [Homo sapiens]
gi|193785526|dbj|BAG50892.1| unnamed protein product [Homo sapiens]
Length = 536
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 308 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 363
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GR +++ + PRG A P ++ L T
Sbjct: 364 EALNSCNKREIEGRAIRLEL-QGPRGSPNARSQP------------SKTLFVKGLSEDTT 410
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 411 EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 456
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 26/174 (14%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A L NLPY +T L EVF +A AEI +S+G ++ + +A++
Sbjct: 217 DARTLLAKNLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKT 271
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-SYQGFVDS-----PHKIYAGNLG 224
G++I GR++ + + G K QN Y+G +S + NL
Sbjct: 272 FEEKQGTEIDGRSISLYY-----------TGEKGQNQDYRGGKNSTWSGESKTLVLSNLS 320
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ T + L++ F+ + + + G+S+G+ F+ F + ED + AL++ N
Sbjct: 321 YSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCN 370
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 392 ARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEED 448
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 449 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 475
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + + SRGFGFV FET E Q+A+ MNG++
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTMNGML 162
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +YV NL + L ++F++ G + S +++ D V+ SRGFGFV EE
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-VSGHSRGFGFVNFEKHEE 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ GR + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL + + LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 V 281
+
Sbjct: 357 I 357
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 102/217 (47%), Gaps = 16/217 (7%)
Query: 66 RQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVE---EEEEPKVAASDEAARLYVGNLPY 122
R ++ FQ D++ +T E + + + + +P + S +++ NL
Sbjct: 50 RSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSG-VGNIFIKNLED 108
Query: 123 SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR 182
S+ + +L + F+ G + S ++V D SRGFGFV + E A+ AI +G + R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTMNGMLLNDR 166
Query: 183 TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL 242
V V + R ER +L F + IY NL + Q L+D F +
Sbjct: 167 KVFVGHFKSRR--EREV---ELGARAMEFTN----IYVKNLHVDVDEQRLQDLFSQFGKM 217
Query: 243 LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LS KV+ + +G SRGFGFV FE E+ Q A+ MNG
Sbjct: 218 LSVKVMRD-VSGHSRGFGFVNFEKHEEAQKAVVNMNG 253
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL S+ L + F+ G + SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPE 190
+ +G +G + + V E
Sbjct: 350 VTEMNGRIVGTKPLYVALAE 369
>gi|91790716|ref|YP_551668.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91699941|gb|ABE46770.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 151
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F + G+V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGSVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDGSQIGGRTVKVN 187
+G +GGR+V VN
Sbjct: 64 MNGQPLGGRSVVVN 77
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+K+Y GNL + + + L+ +F GQ G + SAKV+ ER TGRS+GFGFV + + Q+A+
Sbjct: 3 NKLYVGNLPYSVRDEDLQQSF-GQFGSVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAI 61
Query: 275 DAMNG 279
+ MNG
Sbjct: 62 NGMNG 66
>gi|406926747|gb|EKD62896.1| RNA-binding protein [uncultured bacterium]
Length = 134
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 53/74 (71%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL Y++TS L ++FAEAGTV A ++ + T RS+GFGFV M + E AK AI
Sbjct: 4 KLYVGNLSYTVTSDELRKLFAEAGTVVDAVVISFKDTGRSKGFGFVEMETEEAAKAAIEK 63
Query: 174 FDGSQIGGRTVKVN 187
F+GS +GGR + V+
Sbjct: 64 FNGSDMGGRKIIVS 77
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
K+Y GNL + +TS LR F ++ A VI + TGRS+GFGFV ET E ++A++
Sbjct: 3 KKLYVGNLSYTVTSDELRKLFAEAGTVVDAVVISFKDTGRSKGFGFVEMETEEAAKAAIE 62
Query: 276 AMNG 279
NG
Sbjct: 63 KFNG 66
>gi|237833669|ref|XP_002366132.1| splicing factor, putative [Toxoplasma gondii ME49]
gi|211963796|gb|EEA98991.1| splicing factor, putative [Toxoplasma gondii ME49]
Length = 576
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 16/175 (9%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+V ++ A LY+GNL + L E+F + G V + + D++T +G+GFV +
Sbjct: 21 QVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNE 80
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
+A A++L + ++ G+ +++N K + F D ++ GNL
Sbjct: 81 VDADYALKLMNMVKLYGKALRLN---------------KSAQDRRNF-DVGANVFLGNLD 124
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + + D F ++SAK++ + TG SRGFGFV+F+T E +AL AMNG
Sbjct: 125 PDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNG 179
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D A +++GNL + ++ + F+ G + SA+I+ D T SRGFGFV+ + E +
Sbjct: 113 DVGANVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDA 172
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A+ +G I R + V++
Sbjct: 173 ALAAMNGQFICNRPIHVSY 191
>gi|145250071|ref|XP_001396549.1| spliceosome-associated protein 49 [Aspergillus niger CBS 513.88]
gi|134082060|emb|CAK42179.1| unnamed protein product [Aspergillus niger]
gi|350636041|gb|EHA24401.1| hypothetical protein ASPNIDRAFT_56267 [Aspergillus niger ATCC 1015]
Length = 351
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 15/170 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D+ A +Y+GNL +T S + E+ +AG + + + DRVT +G+GFV S E+A+
Sbjct: 10 DKEATVYIGNLDERVTDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFISEEDAEY 69
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
A R+ +G ++ G+ ++VN K Q V+ +++ GNL +T
Sbjct: 70 ASRIMNGIRLYGKPIRVN---------------KASADKQKSVEIGAELFVGNLDPMVTE 114
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q L D F L++ I S+G+GFV+F E +A+ MNG
Sbjct: 115 QVLYDTFSRFGNLVNIPKIARDDNNLSKGYGFVSFADFESSDAAITNMNG 164
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A L+VGNL +T L + F+ G + + + + S+G+GFV+ E + AI
Sbjct: 100 GAELFVGNLDPMVTEQVLYDTFSRFGNLVNIPKIARDDNNLSKGYGFVSFADFESSDAAI 159
Query: 172 RLFDGSQIGGRTVKVNF 188
+G + + V V +
Sbjct: 160 TNMNGQYLMNKQVSVQY 176
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F G VAS + D VT RS G+ +V + + + A+
Sbjct: 45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ S I G++ ++ + + P L+ + QG I+ NL + ++
Sbjct: 105 EHLNYSLIKGQSCRIMW---------SQRDPALRKTGQG------NIFIKNLDQSIDNKA 149
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
L D F +LS KV + G+SRGF FV + T E +A+ A+NG++
Sbjct: 150 LHDTFAAFGDILSCKVGTDE-NGKSRGFAFVHYSTGEAADAAIKAVNGML 198
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + FA G + S ++ D +SRGF FV + E A AI+
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDE-NGKSRGFAFVHYSTGEAADAAIKAV 194
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G++ + K++ F + +Y N+ +T D
Sbjct: 195 NGMLLNDKKVYVGH----HVGKKERLS-KVEELRAQFTN----VYIKNVDLEVTDAEFED 245
Query: 235 AFQGQPGLLSAKVIFER-YTGRSRGFGFVTFETAEDLQSALDAMN 278
+P + V R G S+GFGFV +E E + A+D +N
Sbjct: 246 LV--KPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELN 288
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+T+ E E E + EE+ + A LYV NL L F GT+ S++++
Sbjct: 303 QTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVM 362
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF---PEVPRGGERAAMGP 202
D + SRGFGFV S +EA +A+ +G IG + + V +V R + +
Sbjct: 363 RDD-SGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQ 421
Query: 203 KLQN---------SYQGFVDSPHKIYAGNLGWGLTSQGL---RDAFQGQPG 241
+ Q QG++ P Y G+G G+ R G PG
Sbjct: 422 RAQQRMQYGAGFPGMQGYMGQPMYGYPPMPGYGQPMPGMPPVRGPMMGYPG 472
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ +T + ++ G S + D S+GFGFV + E A++A+
Sbjct: 229 VYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDE-KGVSKGFGFVNYENHESARKAVDEL 287
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ-GFVDSPHK-----IYAGNLGWGLT 228
+ ++ G+ + + ER A +L+ S++ +++ K +Y NL
Sbjct: 288 NEKEVNGKKLYAGRAQT--KSEREA---ELKKSHEEKRLENEAKSAGVNLYVKNLDDEWD 342
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR F+ + S+KV+ + +G SRGFGFV + + ++ A+ MNG
Sbjct: 343 DDRLRAEFEAFGTITSSKVMRDD-SGVSRGFGFVCYSSPDEATKAVSEMNG 392
>gi|407941455|ref|YP_006857096.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407899249|gb|AFU48458.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 188
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 51/74 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDGSQIGGRTVKVN 187
+G +GGR++ VN
Sbjct: 64 MNGQPLGGRSIVVN 77
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+K+Y GNL + + L AF + SAKV+ ER TGRS+GFGFV + + Q+A++
Sbjct: 3 NKLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 276 AMNG 279
MNG
Sbjct: 63 GMNG 66
>gi|221508124|gb|EEE33711.1| splicing factor, putative [Toxoplasma gondii VEG]
Length = 576
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 16/175 (9%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+V ++ A LY+GNL + L E+F + G V + + D++T +G+GFV +
Sbjct: 21 QVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNE 80
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
+A A++L + ++ G+ +++N K + F D ++ GNL
Sbjct: 81 VDADYALKLMNMVKLYGKALRLN---------------KSAQDRRNF-DVGANVFLGNLD 124
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + + D F ++SAK++ + TG SRGFGFV+F+T E +AL AMNG
Sbjct: 125 PDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNG 179
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D A +++GNL + ++ + F+ G + SA+I+ D T SRGFGFV+ + E +
Sbjct: 113 DVGANVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDA 172
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A+ +G I R + V++
Sbjct: 173 ALAAMNGQFICNRPIHVSY 191
>gi|221486340|gb|EEE24601.1| splicing factor, putative [Toxoplasma gondii GT1]
Length = 576
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 16/175 (9%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+V ++ A LY+GNL + L E+F + G V + + D++T +G+GFV +
Sbjct: 21 QVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNE 80
Query: 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
+A A++L + ++ G+ +++N K + F D ++ GNL
Sbjct: 81 VDADYALKLMNMVKLYGKALRLN---------------KSAQDRRNF-DVGANVFLGNLD 124
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + + D F ++SAK++ + TG SRGFGFV+F+T E +AL AMNG
Sbjct: 125 PDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNG 179
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D A +++GNL + ++ + F+ G + SA+I+ D T SRGFGFV+ + E +
Sbjct: 113 DVGANVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDA 172
Query: 170 AIRLFDGSQIGGRTVKVNF 188
A+ +G I R + V++
Sbjct: 173 ALAAMNGQFICNRPIHVSY 191
>gi|332815667|ref|XP_516145.3| PREDICTED: nucleolin [Pan troglodytes]
Length = 711
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 483 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 538
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GR +++ + PRG A P ++ L T
Sbjct: 539 EALNSCNKREIEGRAIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 585
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 586 EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 34/178 (19%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A L NLPY +T L EVF +A AEI +S+G ++ + +A++
Sbjct: 392 DARTLLAKNLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKT 446
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-SYQGFVDSP-----HKIYAGNLG 224
G++I GR++ + + G K QN Y+G +S + NL
Sbjct: 447 FEEKQGTEIDGRSISLYY-----------TGEKGQNQDYRGGKNSTWSGESKTLVLSNLS 495
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ T + L++ F+ K F + G+S+G+ F+ F + ED + AL++ N
Sbjct: 496 YSATEETLQEVFE--------KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 545
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 567 ARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEED 623
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 624 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 650
>gi|193788267|dbj|BAG53161.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 405 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 460
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GR +++ + PRG A P ++ L T
Sbjct: 461 EALNSCNKREIEGRAIRLEL-QGPRGSPNAGSQP------------SKTLFVKGLSEDTT 507
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 508 EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 553
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 34/178 (19%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A L NLPY +T L EVF +A AEI +S+G ++ + +A++
Sbjct: 314 DARTLLAKNLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKT 368
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-SYQGFVDS-----PHKIYAGNLG 224
G++I GR++ + + G K QN Y+G +S + NL
Sbjct: 369 FEEKQGTEIDGRSISLYY-----------TGEKGQNQDYRGGKNSTWSGESKTLVLSNLS 417
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ T + L++ F+ K F + G+S+G+ F+ F + ED + AL++ N
Sbjct: 418 YSATEETLQEVFE--------KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 467
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 489 AGSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEED 545
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 546 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 572
>gi|403335220|gb|EJY66784.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 307
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
++ A LYVGNL + + E+F + G + + I D+VT+ G+GFV + E+A
Sbjct: 17 NQEATLYVGNLDTKVNEELVWELFLQCGAIVNVHIPRDKVTNEHSGYGFVEFKTEEDADY 76
Query: 170 AIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
AI++ ++ G+ +KVN +A+ + Q + ++ GNL +
Sbjct: 77 AIKIMHMVKLFGKPIKVN---------KASQDKRTQ-------EVGANVFVGNLHEDVDE 120
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LRD F +LS K++ + T S+ +GFV+++ E +++ AMNG
Sbjct: 121 KMLRDVFSSFGIVLSTKIMRDPETQVSKRYGFVSYDNFESSDASIQAMNG 170
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A ++VGNL + L +VF+ G V S +I+ D T S+ +GFV+ + E + +I
Sbjct: 106 GANVFVGNLHEDVDEKMLRDVFSSFGIVLSTKIMRDPETQVSKRYGFVSYDNFESSDASI 165
Query: 172 RLFDGSQIGGRTVKVNF 188
+ +G + G+ + V++
Sbjct: 166 QAMNGQYLCGKPIDVSY 182
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + P L+ S G ++ NL + ++ +
Sbjct: 71 TMNFDMIKGRPIRIMW---------SQRDPSLRKSGVG------NVFIKNLDKNIDNKAM 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV + +G S+G+GFV FET E ++D +NG++
Sbjct: 116 YDTFSAFGNILSCKVAQDE-SGASKGYGFVHFETEEAANKSIDKVNGML 163
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 35/192 (18%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + ++ + F+ G + S ++ D + S+G+GFV + E A ++I
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDE-SGASKGYGFVHFETEEAANKSIDKV 159
Query: 175 DGSQIGGRTVKV-NFPEVPRGGERAAMGPKLQ------------------------NSYQ 209
+G + G+ V V F +PR +G K + N YQ
Sbjct: 160 NGMLLNGKKVYVGKF--IPRKEREKELGEKAKLFTNVYVKNFELKRKFEQLKIERLNRYQ 217
Query: 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
G +Y NL + + LR F + SAKV+ E GRS+GFGFV F E+
Sbjct: 218 GV-----NLYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEE--GRSKGFGFVCFSQPEE 270
Query: 270 LQSALDAMNGVV 281
A+ MNG +
Sbjct: 271 ATKAVTEMNGRI 282
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL ++ L + F GT+ SA+++ + RS+GFGFV EEA +A
Sbjct: 217 QGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEE--GRSKGFGFVCFSQPEEATKA 274
Query: 171 IRLFDGSQIGGRTVKV 186
+ +G +G + + V
Sbjct: 275 VTEMNGRIVGSKPLYV 290
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + +SRGFGFV+ E+
Sbjct: 185 AKAKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDS-SGKSRGFGFVSFEKHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAA--------MGPKLQNSYQGFVDSPHKI 218
A +A+ +G+++ G+TV V + ER A + + + YQG +
Sbjct: 244 ANKAVEEINGTELNGKTVFVG--RAQKKMERQAELKRKFELLKQERISRYQGV-----NL 296
Query: 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
Y NL + + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MN
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 279 GVV 281
G +
Sbjct: 355 GRI 357
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVVKGKPIRIMW---------SQRDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281
D F +LS KV+ + S+G+ FV FET + A++ MNG++
Sbjct: 116 YDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGML 162
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 12/166 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + + A AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGAKAKEFTN----VYIKNFGDEMEDEQLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F+ LS KV+ + +G+SRGFGFV+FE ED A++ +NG
Sbjct: 210 MFEKYGKTLSVKVMTDS-SGKSRGFGFVSFEKHEDANKAVEEINGT 254
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G +G + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 382
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.129 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,094,040,152
Number of Sequences: 23463169
Number of extensions: 173186959
Number of successful extensions: 2365641
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 19545
Number of HSP's successfully gapped in prelim test: 8518
Number of HSP's that attempted gapping in prelim test: 2141599
Number of HSP's gapped (non-prelim): 157260
length of query: 283
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 142
effective length of database: 9,050,888,538
effective search space: 1285226172396
effective search space used: 1285226172396
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 76 (33.9 bits)