Query 023381
Match_columns 283
No_of_seqs 299 out of 2416
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:36:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3.2E-33 7E-38 247.0 20.3 158 108-282 103-260 (346)
2 TIGR01645 half-pint poly-U bin 100.0 3.9E-32 8.5E-37 252.2 19.6 167 109-281 104-270 (612)
3 KOG0113 U1 small nuclear ribon 100.0 2.2E-32 4.7E-37 226.2 10.5 164 25-190 2-179 (335)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.3E-31 1.1E-35 236.4 19.6 155 111-282 2-156 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3E-29 6.6E-34 225.0 21.1 172 111-282 88-336 (352)
6 TIGR01622 SF-CC1 splicing fact 100.0 3.4E-29 7.4E-34 232.1 20.7 169 108-282 85-253 (457)
7 KOG0148 Apoptosis-promoting RN 100.0 1.4E-29 3E-34 206.9 15.2 165 110-281 60-224 (321)
8 TIGR01628 PABP-1234 polyadenyl 100.0 1.9E-28 4.1E-33 232.5 18.9 153 114-282 2-154 (562)
9 KOG0144 RNA-binding protein CU 100.0 3.5E-29 7.7E-34 216.2 12.1 155 111-282 33-190 (510)
10 KOG0145 RNA-binding protein EL 100.0 5E-28 1.1E-32 196.9 12.4 154 111-281 40-193 (360)
11 TIGR01628 PABP-1234 polyadenyl 99.9 6.1E-27 1.3E-31 222.2 17.6 171 110-282 176-351 (562)
12 KOG0131 Splicing factor 3b, su 99.9 2.1E-27 4.5E-32 183.8 10.9 158 109-282 6-164 (203)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.1E-26 4.5E-31 216.3 20.0 168 108-282 171-362 (509)
14 KOG0127 Nucleolar protein fibr 99.9 4.5E-26 9.8E-31 202.1 18.4 167 110-277 115-354 (678)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.6E-25 3.4E-30 210.3 20.1 173 110-282 293-489 (509)
16 KOG0127 Nucleolar protein fibr 99.9 3.9E-26 8.5E-31 202.5 14.8 169 113-282 6-183 (678)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.6E-25 5.7E-30 206.6 20.6 166 110-282 273-461 (481)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.5E-25 5.4E-30 206.8 19.8 157 111-282 1-159 (481)
19 TIGR01648 hnRNP-R-Q heterogene 99.9 7.4E-25 1.6E-29 203.5 17.4 144 111-278 57-203 (578)
20 KOG0117 Heterogeneous nuclear 99.9 4.9E-25 1.1E-29 191.5 15.1 163 111-281 82-317 (506)
21 KOG0124 Polypyrimidine tract-b 99.9 4.4E-25 9.5E-30 187.4 7.3 161 112-278 113-273 (544)
22 TIGR01622 SF-CC1 splicing fact 99.9 3.7E-23 7.9E-28 191.8 20.6 167 112-282 186-435 (457)
23 TIGR01648 hnRNP-R-Q heterogene 99.9 1.4E-23 2.9E-28 195.1 17.1 154 109-282 135-294 (578)
24 KOG0145 RNA-binding protein EL 99.9 5.8E-23 1.3E-27 167.4 15.6 171 111-281 126-344 (360)
25 KOG0123 Polyadenylate-binding 99.9 8.1E-23 1.7E-27 181.9 15.3 139 113-282 2-140 (369)
26 KOG0109 RNA-binding protein LA 99.9 1.7E-23 3.7E-28 173.0 9.7 135 113-282 3-137 (346)
27 KOG0110 RNA-binding protein (R 99.9 3.1E-22 6.8E-27 183.0 12.7 158 115-280 518-678 (725)
28 KOG0146 RNA-binding protein ET 99.9 2.9E-21 6.3E-26 158.1 13.3 173 108-281 15-351 (371)
29 KOG0105 Alternative splicing f 99.9 1.9E-20 4E-25 145.6 15.1 163 110-282 4-175 (241)
30 KOG0147 Transcriptional coacti 99.9 3.9E-22 8.5E-27 177.8 6.0 170 107-280 174-343 (549)
31 KOG0144 RNA-binding protein CU 99.8 1E-20 2.2E-25 164.1 10.4 171 110-281 122-490 (510)
32 KOG4205 RNA-binding protein mu 99.8 7.8E-21 1.7E-25 163.8 9.4 153 111-275 5-157 (311)
33 KOG0123 Polyadenylate-binding 99.8 6.4E-20 1.4E-24 163.4 14.7 155 115-282 79-233 (369)
34 KOG0148 Apoptosis-promoting RN 99.8 3.7E-20 8E-25 151.9 10.7 126 109-281 3-128 (321)
35 TIGR01645 half-pint poly-U bin 99.8 2.1E-18 4.5E-23 161.0 20.5 80 111-190 203-282 (612)
36 KOG4206 Spliceosomal protein s 99.8 1.1E-17 2.5E-22 134.7 15.7 165 109-281 6-207 (221)
37 PLN03134 glycine-rich RNA-bind 99.8 1.3E-17 2.7E-22 130.1 12.0 86 109-194 31-116 (144)
38 KOG4212 RNA-binding protein hn 99.8 4.9E-17 1.1E-21 141.5 16.6 170 110-281 42-280 (608)
39 KOG0147 Transcriptional coacti 99.7 1.6E-17 3.4E-22 148.6 10.7 169 109-282 275-515 (549)
40 KOG4211 Splicing factor hnRNP- 99.7 4.7E-16 1E-20 137.6 17.0 156 111-277 9-165 (510)
41 KOG1548 Transcription elongati 99.7 9.1E-16 2E-20 130.2 15.4 167 111-282 133-339 (382)
42 KOG0106 Alternative splicing f 99.7 6.6E-17 1.4E-21 131.5 8.1 154 113-282 2-158 (216)
43 COG0724 RNA-binding proteins ( 99.7 7.4E-16 1.6E-20 132.4 15.1 164 112-275 115-285 (306)
44 PF00076 RRM_1: RNA recognitio 99.7 6.5E-16 1.4E-20 105.4 9.0 70 115-185 1-70 (70)
45 KOG1457 RNA binding protein (c 99.6 1E-14 2.3E-19 116.9 14.9 169 110-282 32-273 (284)
46 PLN03134 glycine-rich RNA-bind 99.6 1.2E-15 2.5E-20 119.1 9.4 70 213-282 32-101 (144)
47 KOG0149 Predicted RNA-binding 99.6 1.5E-15 3.2E-20 122.9 7.7 80 111-191 11-90 (247)
48 KOG0122 Translation initiation 99.6 4.6E-15 1E-19 120.5 9.7 85 108-192 185-269 (270)
49 KOG0110 RNA-binding protein (R 99.6 8.8E-15 1.9E-19 134.6 12.1 168 108-281 381-584 (725)
50 PF14259 RRM_6: RNA recognitio 99.6 8.3E-15 1.8E-19 100.2 8.0 70 115-185 1-70 (70)
51 PF00076 RRM_1: RNA recognitio 99.6 8.7E-15 1.9E-19 99.8 7.6 64 218-282 1-64 (70)
52 KOG0121 Nuclear cap-binding pr 99.6 1E-14 2.2E-19 107.1 7.5 83 108-190 32-114 (153)
53 KOG0124 Polypyrimidine tract-b 99.6 3.2E-14 7E-19 121.6 11.6 81 109-189 207-287 (544)
54 KOG0107 Alternative splicing f 99.5 1.5E-14 3.2E-19 112.0 7.7 78 111-193 9-86 (195)
55 PLN03120 nucleic acid binding 99.5 3.8E-14 8.2E-19 118.4 10.1 76 112-191 4-79 (260)
56 KOG4207 Predicted splicing fac 99.5 1.3E-14 2.8E-19 115.1 6.7 85 108-192 9-93 (256)
57 KOG0149 Predicted RNA-binding 99.5 1.2E-14 2.7E-19 117.6 6.6 64 215-278 12-75 (247)
58 KOG1190 Polypyrimidine tract-b 99.5 2.5E-13 5.3E-18 117.8 14.7 160 112-280 297-475 (492)
59 KOG0126 Predicted RNA-binding 99.5 1.3E-15 2.8E-20 118.4 0.2 85 107-191 30-114 (219)
60 KOG0120 Splicing factor U2AF, 99.5 3.5E-14 7.7E-19 128.6 9.2 173 110-282 287-479 (500)
61 TIGR01659 sex-lethal sex-letha 99.5 8.4E-14 1.8E-18 123.6 11.3 82 111-192 192-275 (346)
62 KOG0125 Ataxin 2-binding prote 99.5 4.3E-14 9.3E-19 119.3 8.5 82 109-192 93-174 (376)
63 KOG0122 Translation initiation 99.5 6.5E-14 1.4E-18 113.9 7.7 68 213-280 187-254 (270)
64 KOG0130 RNA-binding protein RB 99.5 6.3E-14 1.4E-18 103.9 6.9 87 106-192 66-152 (170)
65 PLN03213 repressor of silencin 99.5 1.1E-13 2.5E-18 122.5 9.5 77 111-191 9-87 (759)
66 PF14259 RRM_6: RNA recognitio 99.5 1.6E-13 3.5E-18 93.7 7.6 64 218-282 1-64 (70)
67 smart00362 RRM_2 RNA recogniti 99.5 3.5E-13 7.7E-18 91.5 9.0 72 114-187 1-72 (72)
68 KOG0114 Predicted RNA-binding 99.5 4E-13 8.7E-18 95.1 8.7 79 109-190 15-93 (124)
69 PLN03121 nucleic acid binding 99.5 4.9E-13 1.1E-17 110.1 10.1 76 111-190 4-79 (243)
70 KOG0415 Predicted peptidyl pro 99.4 3.2E-13 7E-18 115.1 9.0 84 107-190 234-317 (479)
71 KOG0108 mRNA cleavage and poly 99.4 2.4E-13 5.1E-18 122.6 8.2 80 113-192 19-98 (435)
72 smart00360 RRM RNA recognition 99.4 7.1E-13 1.5E-17 89.6 8.7 71 117-187 1-71 (71)
73 KOG0129 Predicted RNA-binding 99.4 1.9E-12 4.2E-17 115.7 13.5 164 110-276 257-432 (520)
74 KOG0126 Predicted RNA-binding 99.4 2.8E-14 6.1E-19 111.0 -0.5 69 214-282 34-102 (219)
75 KOG1365 RNA-binding protein Fu 99.4 8.8E-13 1.9E-17 113.5 8.1 167 112-281 161-348 (508)
76 cd00590 RRM RRM (RNA recogniti 99.4 3.9E-12 8.5E-17 86.7 9.9 74 114-188 1-74 (74)
77 KOG0125 Ataxin 2-binding prote 99.4 7.1E-13 1.5E-17 112.1 7.3 69 212-282 93-161 (376)
78 KOG0111 Cyclophilin-type pepti 99.4 4.1E-13 8.9E-18 107.6 4.9 87 109-195 7-93 (298)
79 KOG4207 Predicted splicing fac 99.4 8.4E-13 1.8E-17 104.9 5.9 71 212-282 10-80 (256)
80 KOG4212 RNA-binding protein hn 99.4 2E-11 4.3E-16 106.9 14.7 76 112-188 215-290 (608)
81 KOG0113 U1 small nuclear ribon 99.4 2.3E-12 5.1E-17 107.7 8.5 70 213-282 99-168 (335)
82 KOG0114 Predicted RNA-binding 99.4 4.1E-12 8.8E-17 90.1 7.9 65 214-281 17-81 (124)
83 smart00362 RRM_2 RNA recogniti 99.3 4.6E-12 1E-16 85.9 8.0 64 217-282 1-64 (72)
84 KOG0120 Splicing factor U2AF, 99.3 2.4E-12 5.3E-17 116.8 8.4 166 110-282 173-356 (500)
85 PLN03120 nucleic acid binding 99.3 3.5E-12 7.6E-17 106.7 8.3 64 215-282 4-67 (260)
86 KOG0117 Heterogeneous nuclear 99.3 1.5E-11 3.3E-16 107.9 12.0 69 213-281 81-149 (506)
87 smart00360 RRM RNA recognition 99.3 6.9E-12 1.5E-16 84.7 7.3 63 220-282 1-63 (71)
88 KOG0121 Nuclear cap-binding pr 99.3 4.2E-12 9.2E-17 93.4 6.0 68 214-281 35-102 (153)
89 smart00361 RRM_1 RNA recogniti 99.3 1.3E-11 2.7E-16 84.3 8.0 61 126-186 2-69 (70)
90 PLN03121 nucleic acid binding 99.3 9.9E-12 2.1E-16 102.4 8.6 66 214-283 4-69 (243)
91 KOG0107 Alternative splicing f 99.3 6.2E-12 1.3E-16 97.6 6.2 64 214-282 9-72 (195)
92 PLN03213 repressor of silencin 99.3 1E-11 2.2E-16 110.2 7.5 65 214-282 9-75 (759)
93 KOG1190 Polypyrimidine tract-b 99.2 2.4E-10 5.1E-15 99.5 13.8 162 112-282 150-360 (492)
94 PF13893 RRM_5: RNA recognitio 99.2 3.3E-11 7.1E-16 78.5 6.5 56 129-189 1-56 (56)
95 KOG4211 Splicing factor hnRNP- 99.2 3.2E-10 7E-15 101.0 14.2 163 110-276 101-340 (510)
96 KOG1456 Heterogeneous nuclear 99.2 6.6E-10 1.4E-14 95.8 15.5 167 108-281 283-471 (494)
97 cd00590 RRM RRM (RNA recogniti 99.2 9.1E-11 2E-15 79.8 8.2 65 217-282 1-65 (74)
98 COG0724 RNA-binding proteins ( 99.2 5.1E-11 1.1E-15 102.2 8.5 68 215-282 115-182 (306)
99 KOG4208 Nucleolar RNA-binding 99.2 6.3E-11 1.4E-15 94.5 8.0 84 109-192 46-130 (214)
100 KOG0130 RNA-binding protein RB 99.2 3.2E-11 6.9E-16 89.6 5.5 69 214-282 71-139 (170)
101 KOG4454 RNA binding protein (R 99.2 5.1E-12 1.1E-16 101.3 1.3 138 109-279 6-147 (267)
102 smart00361 RRM_1 RNA recogniti 99.2 9.2E-11 2E-15 80.0 6.6 54 229-282 2-62 (70)
103 KOG0131 Splicing factor 3b, su 99.1 3.7E-11 7.9E-16 93.9 4.4 65 214-278 8-72 (203)
104 KOG0108 mRNA cleavage and poly 99.1 9.1E-11 2E-15 106.0 7.2 67 216-282 19-85 (435)
105 KOG4210 Nuclear localization s 99.1 2.3E-10 5.1E-15 98.7 6.9 160 110-276 86-246 (285)
106 KOG0128 RNA-binding protein SA 99.1 8.2E-12 1.8E-16 117.3 -2.6 136 111-281 666-801 (881)
107 KOG1365 RNA-binding protein Fu 99.1 3.4E-09 7.4E-14 91.7 13.5 166 109-279 57-228 (508)
108 KOG4208 Nucleolar RNA-binding 99.1 3.5E-10 7.5E-15 90.3 6.8 71 213-283 47-118 (214)
109 KOG0226 RNA-binding proteins [ 99.1 2.5E-10 5.4E-15 93.7 5.8 156 114-281 98-256 (290)
110 KOG0146 RNA-binding protein ET 99.0 3.6E-10 7.8E-15 93.4 6.0 86 107-192 280-365 (371)
111 KOG0109 RNA-binding protein LA 99.0 3.3E-10 7.2E-15 94.7 5.7 77 108-192 74-150 (346)
112 KOG1456 Heterogeneous nuclear 99.0 6.2E-09 1.3E-13 89.9 12.0 153 108-281 27-183 (494)
113 KOG0111 Cyclophilin-type pepti 99.0 3.6E-10 7.7E-15 90.9 3.2 68 214-281 9-76 (298)
114 KOG0132 RNA polymerase II C-te 99.0 5.6E-09 1.2E-13 97.6 11.1 81 108-194 417-497 (894)
115 KOG4661 Hsp27-ERE-TATA-binding 98.9 3.2E-09 7E-14 96.1 8.8 86 109-194 402-487 (940)
116 KOG4206 Spliceosomal protein s 98.9 4.1E-09 8.8E-14 85.5 7.5 67 214-283 8-78 (221)
117 PF13893 RRM_5: RNA recognitio 98.9 4.6E-09 9.9E-14 68.3 5.9 46 232-282 1-46 (56)
118 KOG0105 Alternative splicing f 98.9 3.2E-09 6.9E-14 83.3 5.0 64 214-280 5-68 (241)
119 KOG4205 RNA-binding protein mu 98.9 4.5E-09 9.8E-14 91.2 6.2 84 111-195 96-179 (311)
120 KOG0226 RNA-binding proteins [ 98.9 1.2E-08 2.5E-13 84.0 8.2 80 110-189 188-267 (290)
121 KOG0415 Predicted peptidyl pro 98.8 9.3E-09 2E-13 88.2 5.9 72 211-282 235-306 (479)
122 KOG0116 RasGAP SH3 binding pro 98.8 3E-08 6.4E-13 89.4 8.7 82 109-191 285-366 (419)
123 KOG0153 Predicted RNA-binding 98.8 3.7E-08 8E-13 84.4 8.5 76 110-191 226-302 (377)
124 KOG0533 RRM motif-containing p 98.7 5.3E-08 1.2E-12 81.4 8.4 81 111-192 82-162 (243)
125 KOG0112 Large RNA-binding prot 98.7 9.4E-09 2E-13 97.6 4.2 149 108-282 368-516 (975)
126 PF04059 RRM_2: RNA recognitio 98.7 3E-07 6.5E-12 66.1 10.1 78 113-190 2-85 (97)
127 KOG4209 Splicing factor RNPS1, 98.6 4.5E-08 9.7E-13 82.0 5.6 85 107-192 96-180 (231)
128 KOG4676 Splicing factor, argin 98.6 3.8E-08 8.3E-13 85.5 4.3 165 112-282 7-213 (479)
129 KOG4660 Protein Mei2, essentia 98.6 4.1E-08 9E-13 89.0 4.6 72 109-185 72-143 (549)
130 PF12220 U1snRNP70_N: U1 small 98.5 5.2E-08 1.1E-12 70.1 1.0 29 25-53 2-30 (94)
131 KOG0153 Predicted RNA-binding 98.4 2.9E-07 6.4E-12 79.0 5.6 62 214-281 227-288 (377)
132 KOG0533 RRM motif-containing p 98.4 4.8E-07 1E-11 75.7 6.6 64 215-279 83-146 (243)
133 KOG0132 RNA polymerase II C-te 98.4 4.3E-07 9.2E-12 85.4 6.1 61 214-280 420-480 (894)
134 KOG0151 Predicted splicing reg 98.4 6.1E-07 1.3E-11 83.5 6.9 79 112-190 174-255 (877)
135 KOG4209 Splicing factor RNPS1, 98.4 4.9E-07 1.1E-11 75.7 5.6 68 214-282 100-167 (231)
136 PF04059 RRM_2: RNA recognitio 98.4 2.3E-06 5.1E-11 61.5 7.7 67 216-282 2-70 (97)
137 KOG1457 RNA binding protein (c 98.3 1.9E-06 4.1E-11 69.9 7.3 69 214-282 33-102 (284)
138 KOG4660 Protein Mei2, essentia 98.3 7.7E-07 1.7E-11 80.9 5.0 65 213-282 73-137 (549)
139 KOG2193 IGF-II mRNA-binding pr 98.3 1.5E-07 3.3E-12 82.7 0.2 140 113-282 2-144 (584)
140 KOG4307 RNA binding protein RB 98.2 3.3E-06 7.2E-11 78.6 7.4 162 111-275 310-494 (944)
141 KOG0116 RasGAP SH3 binding pro 98.2 2.2E-06 4.7E-11 77.5 5.3 62 215-276 288-349 (419)
142 KOG3152 TBP-binding protein, a 98.2 2.6E-06 5.6E-11 70.5 5.2 74 111-184 73-158 (278)
143 KOG4661 Hsp27-ERE-TATA-binding 98.2 6.2E-06 1.3E-10 75.3 7.6 65 214-278 404-468 (940)
144 KOG0106 Alternative splicing f 98.2 1.4E-06 3.1E-11 71.4 3.1 60 216-283 2-61 (216)
145 KOG0128 RNA-binding protein SA 98.1 1.3E-07 2.8E-12 89.7 -3.7 163 111-281 570-733 (881)
146 KOG1548 Transcription elongati 98.1 9E-06 1.9E-10 70.0 7.7 66 216-282 135-208 (382)
147 KOG0151 Predicted splicing reg 98.1 3.8E-06 8.3E-11 78.4 5.7 70 213-282 172-244 (877)
148 KOG4454 RNA binding protein (R 98.1 1.8E-06 3.9E-11 69.8 2.0 65 214-280 8-72 (267)
149 PF11608 Limkain-b1: Limkain b 98.0 3.2E-05 7E-10 53.2 7.3 68 113-190 3-75 (90)
150 COG5175 MOT2 Transcriptional r 98.0 1.8E-05 3.9E-10 68.0 7.3 80 111-190 113-201 (480)
151 PF08777 RRM_3: RNA binding mo 97.9 1.9E-05 4.2E-10 58.0 5.1 56 216-277 2-57 (105)
152 KOG4307 RNA binding protein RB 97.8 7.8E-05 1.7E-09 69.8 7.5 77 112-188 867-943 (944)
153 KOG1995 Conserved Zn-finger pr 97.7 3.9E-05 8.4E-10 66.7 4.8 84 109-192 63-154 (351)
154 KOG1995 Conserved Zn-finger pr 97.7 4E-05 8.7E-10 66.6 4.7 70 213-282 64-141 (351)
155 KOG2314 Translation initiation 97.7 0.00017 3.6E-09 66.1 8.8 78 110-188 56-140 (698)
156 KOG0115 RNA-binding protein p5 97.7 0.00012 2.5E-09 60.9 6.6 88 166-278 6-93 (275)
157 KOG4210 Nuclear localization s 97.6 6.3E-05 1.4E-09 65.2 3.9 82 110-192 182-264 (285)
158 KOG4849 mRNA cleavage factor I 97.5 9E-05 2E-09 64.0 4.0 77 112-188 80-158 (498)
159 KOG2314 Translation initiation 97.4 0.00017 3.7E-09 66.1 4.7 66 216-282 59-130 (698)
160 PF11608 Limkain-b1: Limkain b 97.4 0.00044 9.5E-09 47.8 5.3 57 216-282 3-64 (90)
161 KOG1855 Predicted RNA-binding 97.3 0.0002 4.3E-09 63.6 4.0 65 214-278 230-307 (484)
162 PF08777 RRM_3: RNA binding mo 97.3 0.00049 1.1E-08 50.5 5.4 70 113-188 2-76 (105)
163 KOG0129 Predicted RNA-binding 97.3 0.00079 1.7E-08 61.3 7.3 67 107-173 365-432 (520)
164 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00067 1.5E-08 43.2 4.8 52 216-274 2-53 (53)
165 KOG3152 TBP-binding protein, a 97.3 0.00018 4E-09 59.7 2.6 67 216-282 75-153 (278)
166 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0019 4.1E-08 46.8 5.5 66 215-282 6-78 (100)
167 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.0028 6.1E-08 40.3 5.4 52 113-171 2-53 (53)
168 KOG2202 U2 snRNP splicing fact 96.9 0.00061 1.3E-08 56.8 2.3 63 127-190 83-146 (260)
169 KOG4849 mRNA cleavage factor I 96.8 0.00098 2.1E-08 57.8 3.0 62 216-277 81-144 (498)
170 KOG1996 mRNA splicing factor [ 96.7 0.0032 6.9E-08 53.5 5.5 54 229-282 300-354 (378)
171 KOG0112 Large RNA-binding prot 96.7 0.0022 4.7E-08 62.1 5.0 77 109-191 452-530 (975)
172 COG5175 MOT2 Transcriptional r 96.6 0.0042 9.1E-08 53.8 5.5 67 215-281 114-189 (480)
173 KOG2416 Acinus (induces apopto 96.6 0.0017 3.7E-08 60.1 3.2 66 211-282 440-506 (718)
174 PF10309 DUF2414: Protein of u 96.5 0.014 3.1E-07 38.2 6.4 55 215-277 5-62 (62)
175 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.0095 2.1E-07 43.2 6.1 76 112-189 6-89 (100)
176 KOG1855 Predicted RNA-binding 96.5 0.0026 5.6E-08 56.7 3.8 78 111-188 230-320 (484)
177 PF08952 DUF1866: Domain of un 96.4 0.011 2.3E-07 45.6 5.9 74 108-190 23-105 (146)
178 KOG1996 mRNA splicing factor [ 96.3 0.013 2.9E-07 49.8 6.5 63 127-189 301-364 (378)
179 KOG4676 Splicing factor, argin 96.3 0.0049 1.1E-07 54.4 3.9 68 215-283 7-77 (479)
180 PF03467 Smg4_UPF3: Smg-4/UPF3 96.1 0.0077 1.7E-07 48.6 4.2 69 215-283 7-81 (176)
181 KOG2416 Acinus (induces apopto 96.0 0.0075 1.6E-07 56.0 4.1 75 110-190 442-520 (718)
182 KOG0115 RNA-binding protein p5 96.0 0.023 4.9E-07 47.6 6.5 75 113-188 32-110 (275)
183 PF07576 BRAP2: BRCA1-associat 95.7 0.14 3.1E-06 37.7 9.2 69 111-181 12-81 (110)
184 PF07576 BRAP2: BRCA1-associat 95.6 0.14 3E-06 37.8 8.5 65 216-282 14-79 (110)
185 KOG2068 MOT2 transcription fac 95.0 0.011 2.3E-07 51.5 1.4 78 112-190 77-161 (327)
186 KOG2193 IGF-II mRNA-binding pr 94.8 0.026 5.7E-07 50.4 3.3 59 216-282 2-62 (584)
187 PF08675 RNA_bind: RNA binding 94.8 0.1 2.3E-06 36.1 5.5 53 217-278 11-63 (87)
188 KOG2202 U2 snRNP splicing fact 94.7 0.012 2.5E-07 49.3 0.8 52 230-282 83-135 (260)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 94.4 0.031 6.8E-07 45.0 2.6 81 111-191 6-97 (176)
190 PF10309 DUF2414: Protein of u 94.4 0.4 8.7E-06 31.4 7.2 54 113-174 6-62 (62)
191 KOG0804 Cytoplasmic Zn-finger 94.2 0.43 9.4E-06 43.3 9.4 68 112-181 74-142 (493)
192 PF15023 DUF4523: Protein of u 93.7 0.55 1.2E-05 36.0 7.8 73 109-189 83-159 (166)
193 KOG2591 c-Mpl binding protein, 93.5 0.15 3.3E-06 47.3 5.5 75 107-188 170-248 (684)
194 PF11767 SET_assoc: Histone ly 93.4 0.41 8.8E-06 31.8 6.1 54 124-186 12-65 (66)
195 PF08675 RNA_bind: RNA binding 93.2 0.43 9.4E-06 33.1 6.0 55 112-175 9-63 (87)
196 PF08952 DUF1866: Domain of un 93.1 0.3 6.6E-06 37.7 5.8 62 212-282 24-94 (146)
197 KOG2318 Uncharacterized conser 92.8 0.97 2.1E-05 42.4 9.5 82 107-188 169-302 (650)
198 KOG0804 Cytoplasmic Zn-finger 92.5 0.32 6.9E-06 44.1 5.9 66 215-282 74-140 (493)
199 KOG2591 c-Mpl binding protein, 92.5 0.72 1.6E-05 43.0 8.2 85 163-277 146-232 (684)
200 PF04847 Calcipressin: Calcipr 91.6 0.5 1.1E-05 38.3 5.6 60 125-190 8-69 (184)
201 PF15023 DUF4523: Protein of u 91.6 0.36 7.8E-06 37.0 4.4 60 213-279 84-147 (166)
202 KOG2253 U1 snRNP complex, subu 91.3 0.17 3.6E-06 48.0 2.9 123 109-242 37-162 (668)
203 PF07292 NID: Nmi/IFP 35 domai 91.3 0.2 4.3E-06 35.3 2.6 73 157-237 1-74 (88)
204 KOG2135 Proteins containing th 91.3 0.12 2.6E-06 47.0 1.9 73 112-191 372-445 (526)
205 KOG4285 Mitotic phosphoprotein 90.6 0.42 9E-06 41.2 4.3 59 216-282 198-256 (350)
206 PF11767 SET_assoc: Histone ly 90.1 0.94 2E-05 30.1 4.9 49 226-283 11-59 (66)
207 KOG2068 MOT2 transcription fac 89.1 0.39 8.5E-06 42.0 3.2 65 216-281 78-149 (327)
208 PF10567 Nab6_mRNP_bdg: RNA-re 88.6 14 0.00031 32.0 12.0 165 112-277 15-211 (309)
209 KOG4285 Mitotic phosphoprotein 86.5 1.6 3.4E-05 37.8 5.2 68 115-190 200-268 (350)
210 PF03880 DbpA: DbpA RNA bindin 85.2 4 8.6E-05 27.6 5.9 58 123-189 12-74 (74)
211 COG5638 Uncharacterized conser 81.3 10 0.00022 34.3 8.2 76 107-182 141-286 (622)
212 KOG2253 U1 snRNP complex, subu 79.7 2.4 5.3E-05 40.5 4.0 57 213-278 38-94 (668)
213 KOG4574 RNA-binding protein (c 79.2 1.5 3.2E-05 43.1 2.6 70 115-190 301-372 (1007)
214 KOG4574 RNA-binding protein (c 78.3 1.2 2.6E-05 43.7 1.7 60 216-281 299-358 (1007)
215 KOG4410 5-formyltetrahydrofola 73.2 24 0.00051 30.5 7.8 58 216-278 331-395 (396)
216 smart00596 PRE_C2HC PRE_C2HC d 71.7 6.7 0.00015 26.2 3.4 61 127-190 2-63 (69)
217 KOG4410 5-formyltetrahydrofola 70.2 37 0.00079 29.4 8.3 57 112-174 330-394 (396)
218 PF03468 XS: XS domain; Inter 67.2 9.2 0.0002 28.5 3.8 56 114-172 10-75 (116)
219 PF07530 PRE_C2HC: Associated 59.3 23 0.0005 23.6 4.2 61 127-190 2-63 (68)
220 KOG2318 Uncharacterized conser 58.9 39 0.00084 32.2 6.9 71 212-282 171-293 (650)
221 PF14111 DUF4283: Domain of un 57.5 11 0.00024 29.0 2.9 118 114-248 17-138 (153)
222 KOG1295 Nonsense-mediated deca 57.1 14 0.00031 33.1 3.7 69 215-283 7-78 (376)
223 TIGR02542 B_forsyth_147 Bacter 56.5 23 0.00051 26.2 4.1 114 120-267 11-129 (145)
224 KOG4483 Uncharacterized conser 49.9 35 0.00076 31.0 5.0 56 214-276 390-446 (528)
225 KOG2295 C2H2 Zn-finger protein 49.1 3 6.4E-05 39.1 -1.8 70 111-180 230-299 (648)
226 PF02714 DUF221: Domain of unk 47.8 32 0.00069 30.3 4.6 55 157-236 1-55 (325)
227 KOG4483 Uncharacterized conser 47.5 73 0.0016 29.0 6.6 57 110-173 389-446 (528)
228 KOG2295 C2H2 Zn-finger protein 42.0 3.7 8.1E-05 38.5 -2.3 67 214-280 230-296 (648)
229 KOG2135 Proteins containing th 40.7 11 0.00023 34.9 0.4 41 228-274 386-426 (526)
230 KOG4365 Uncharacterized conser 39.7 8.5 0.00018 35.2 -0.3 76 114-190 5-80 (572)
231 PF03439 Spt5-NGN: Early trans 36.8 62 0.0013 22.4 3.7 26 255-280 42-67 (84)
232 KOG1295 Nonsense-mediated deca 36.2 35 0.00077 30.7 2.9 68 112-179 7-77 (376)
233 KOG2891 Surface glycoprotein [ 35.9 38 0.00082 29.1 2.9 71 109-179 146-247 (445)
234 PF15513 DUF4651: Domain of un 34.3 65 0.0014 21.1 3.2 19 230-248 9-27 (62)
235 PF10567 Nab6_mRNP_bdg: RNA-re 33.4 65 0.0014 28.1 4.0 57 215-271 15-78 (309)
236 PF03439 Spt5-NGN: Early trans 33.1 79 0.0017 21.8 3.8 26 152-177 42-67 (84)
237 COG5193 LHP1 La protein, small 32.1 26 0.00057 31.7 1.5 60 216-275 175-244 (438)
238 TIGR03636 L23_arch archaeal ri 31.8 1.4E+02 0.003 20.4 4.7 57 218-277 16-74 (77)
239 PRK11901 hypothetical protein; 31.2 1.6E+02 0.0035 26.2 6.0 60 111-175 244-305 (327)
240 COG5193 LHP1 La protein, small 30.9 19 0.00042 32.5 0.5 63 110-172 172-244 (438)
241 PRK11901 hypothetical protein; 27.8 1.4E+02 0.003 26.5 5.1 59 215-278 245-305 (327)
242 KOG4213 RNA-binding protein La 26.0 82 0.0018 25.4 3.1 68 112-185 111-180 (205)
243 PF11411 DNA_ligase_IV: DNA li 25.3 48 0.001 19.1 1.2 15 226-240 20-34 (36)
244 KOG2891 Surface glycoprotein [ 25.2 68 0.0015 27.7 2.7 35 214-248 148-194 (445)
245 COG5507 Uncharacterized conser 22.6 93 0.002 22.4 2.5 22 256-277 65-86 (117)
246 PRK14548 50S ribosomal protein 22.5 2.3E+02 0.005 19.7 4.5 57 218-277 23-81 (84)
247 COG0275 Predicted S-adenosylme 21.5 2.6E+02 0.0057 24.7 5.6 81 164-244 82-162 (314)
248 KOG0156 Cytochrome P450 CYP2 s 21.1 2.1E+02 0.0046 27.1 5.5 65 110-184 30-97 (489)
249 PF09707 Cas_Cas2CT1978: CRISP 20.2 2.3E+02 0.0049 19.9 4.1 47 112-161 25-71 (86)
250 COG0030 KsgA Dimethyladenosine 20.0 1.3E+02 0.0029 25.8 3.5 34 112-145 95-128 (259)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.2e-33 Score=247.05 Aligned_cols=158 Identities=27% Similarity=0.464 Sum_probs=145.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
.....++|||+|||+++++++|+++|+.||.|..|+|++|..+++++|||||+|.++++|..|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 33467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCH
Q 023381 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (283)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~ 267 (283)
++..... .....+|||+|||+.+++++|+++|++||.|+.++|+.++.+|++||||||+|.+.
T Consensus 183 ~a~p~~~-----------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 183 YARPGGE-----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred ccccccc-----------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 8764221 01235799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCccc
Q 023381 268 EDLQSALDAMNGVVR 282 (283)
Q Consensus 268 ~~A~~Al~~lnG~~~ 282 (283)
++|.+||+.|||..+
T Consensus 246 e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 246 EEAQEAISALNNVIP 260 (346)
T ss_pred HHHHHHHHHhCCCcc
Confidence 999999999999854
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=3.9e-32 Score=252.18 Aligned_cols=167 Identities=20% Similarity=0.404 Sum_probs=145.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
....++|||+|||+++++++|+++|..||.|.+|++++|..+|+++|||||+|.+.++|..|++.+||..|+||.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHH
Q 023381 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (283)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~ 268 (283)
+......... ...........++|||+||+..+++++|+++|+.||.|+++++.+++.+|++||||||+|.+.+
T Consensus 184 p~~~p~a~~~------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 184 PSNMPQAQPI------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred cccccccccc------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 5422111100 0001111224578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcc
Q 023381 269 DLQSALDAMNGVV 281 (283)
Q Consensus 269 ~A~~Al~~lnG~~ 281 (283)
+|.+|+..|||..
T Consensus 258 ~A~kAI~amNg~e 270 (612)
T TIGR01645 258 SQSEAIASMNLFD 270 (612)
T ss_pred HHHHHHHHhCCCe
Confidence 9999999999875
No 3
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=2.2e-32 Score=226.16 Aligned_cols=164 Identities=23% Similarity=0.336 Sum_probs=124.1
Q ss_pred ccCCCCCcccCCCCCCCCCCCccCCCCCCcccccccccccccccccCCCCCcccCCCCCCC--------------ccchh
Q 023381 25 TQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEP--------------ETEQE 90 (283)
Q Consensus 25 t~~~p~~l~~~f~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 90 (283)
|++||||||+||+||||++|++|++++|+--... +...+++|...+.........-..+ +....
T Consensus 2 ~~~lp~nllaLF~pRpPl~y~pP~d~~p~kr~~~--~~tGvA~~~~~~~~~~d~p~~~p~~t~~e~~er~~~~k~e~~~~ 79 (335)
T KOG0113|consen 2 TQFLPPNLLALFAPRPPLPYLPPTDKLPHKRKTN--PYTGVAQYLSTFEDPKDAPPKFPVETPEEPLERGRREKTEKIPH 79 (335)
T ss_pred CccCCccHHHhcCCCCCcccCCccccChhhccCC--CcccHHHHHHhhcCcccCCCcCcccchhhHHHhhhhhhhhhhHH
Confidence 7889999999999999999999999888632211 2223444444433322211110000 00011
Q ss_pred hhhhhhhhhhccCcccccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHH
Q 023381 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (283)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a 170 (283)
..+......+...+..+..++++||||+.|+++++|++|+..|+.||+|+.|+||+|+.||+++|||||+|+++.++..|
T Consensus 80 ~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~A 159 (335)
T KOG0113|consen 80 KLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAA 159 (335)
T ss_pred HHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHH
Confidence 11222333444555667789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCccCCceeEEeccc
Q 023381 171 IRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 171 ~~~l~g~~i~gr~l~v~~a~ 190 (283)
++..+|.+|+|+.|.|++-.
T Consensus 160 YK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 160 YKDADGIKIDGRRILVDVER 179 (335)
T ss_pred HHhccCceecCcEEEEEecc
Confidence 99999999999999999854
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=5.3e-31 Score=236.36 Aligned_cols=155 Identities=26% Similarity=0.511 Sum_probs=143.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
+..+|||+|||+++++++|+++|+.||+|..|++++++.+|+++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHH
Q 023381 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (283)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A 270 (283)
+... ....++|||+|||..+++++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|
T Consensus 82 ~~~~-----------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A 144 (352)
T TIGR01661 82 PSSD-----------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEA 144 (352)
T ss_pred cccc-----------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHH
Confidence 4221 11245799999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHcCCccc
Q 023381 271 QSALDAMNGVVR 282 (283)
Q Consensus 271 ~~Al~~lnG~~~ 282 (283)
..|++.|||..+
T Consensus 145 ~~ai~~l~g~~~ 156 (352)
T TIGR01661 145 DRAIKTLNGTTP 156 (352)
T ss_pred HHHHHHhCCCcc
Confidence 999999999754
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3e-29 Score=224.97 Aligned_cols=172 Identities=25% Similarity=0.414 Sum_probs=141.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCC--ceeEEec
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNF 188 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g--r~l~v~~ 188 (283)
...+|||+|||..+++++|+.+|+.||.|..+.++.+..++.++|||||+|.+.++|..|++.|||..+.| +.|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998889999999999999999999999999999987 5678887
Q ss_pred ccCCCCCCccCCCC-----------c-------------------------------------------------c----
Q 023381 189 PEVPRGGERAAMGP-----------K-------------------------------------------------L---- 204 (283)
Q Consensus 189 a~~~~~~~~~~~~~-----------~-------------------------------------------------~---- 204 (283)
+..+.......... . .
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 75332110000000 0 0
Q ss_pred -----------cCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHH
Q 023381 205 -----------QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273 (283)
Q Consensus 205 -----------~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~A 273 (283)
............+|||+|||+.+++++|+++|++||.|.+++|+.|+.+|.+||||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 000000011234699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCccc
Q 023381 274 LDAMNGVVR 282 (283)
Q Consensus 274 l~~lnG~~~ 282 (283)
+..|||..+
T Consensus 328 i~~lnG~~~ 336 (352)
T TIGR01661 328 ILSLNGYTL 336 (352)
T ss_pred HHHhCCCEE
Confidence 999999865
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=3.4e-29 Score=232.14 Aligned_cols=169 Identities=29% Similarity=0.473 Sum_probs=146.4
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+.+++++|+++|+.||.|..|.++.+..+|+++|||||+|.+.++|.+|+. ++|..+.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999998 89999999999998
Q ss_pred cccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCH
Q 023381 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (283)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~ 267 (283)
++........... .......+...+|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.
T Consensus 164 ~~~~~~~~~~~~~-----~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 164 SSQAEKNRAAKAA-----THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred ecchhhhhhhhcc-----cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 7653322111100 01111223468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCccc
Q 023381 268 EDLQSALDAMNGVVR 282 (283)
Q Consensus 268 ~~A~~Al~~lnG~~~ 282 (283)
++|.+|+..|||..+
T Consensus 239 e~A~~A~~~l~g~~i 253 (457)
T TIGR01622 239 EEAKEALEVMNGFEL 253 (457)
T ss_pred HHHHHHHHhcCCcEE
Confidence 999999999999653
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.4e-29 Score=206.93 Aligned_cols=165 Identities=28% Similarity=0.500 Sum_probs=145.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.....+||+.|...++-++|+.-|.+||+|.+++|+||..|++++||+||.|.+.++|+.||..|+|.-|++|.|+-.|+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 33567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHH
Q 023381 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269 (283)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~ 269 (283)
..+.. +.......-........+..++||++|++..+++++|++.|+.||.|.+|||+++ +||+||+|.+.|.
T Consensus 140 TRKp~-e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 140 TRKPS-EMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEA 212 (321)
T ss_pred ccCcc-ccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhh
Confidence 86662 2222222222334455667899999999999999999999999999999999977 6899999999999
Q ss_pred HHHHHHHcCCcc
Q 023381 270 LQSALDAMNGVV 281 (283)
Q Consensus 270 A~~Al~~lnG~~ 281 (283)
|.+||..|||+-
T Consensus 213 AahAIv~mNnte 224 (321)
T KOG0148|consen 213 AAHAIVQMNNTE 224 (321)
T ss_pred HHHHHHHhcCce
Confidence 999999999874
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.9e-28 Score=232.49 Aligned_cols=153 Identities=30% Similarity=0.543 Sum_probs=138.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccCCC
Q 023381 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193 (283)
Q Consensus 114 ~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~~~ 193 (283)
+|||+|||.++||++|+++|++||.|.+|++.+|..+++++|||||+|.+.++|.+|+..+++..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999865321
Q ss_pred CCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHH
Q 023381 194 GGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273 (283)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~A 273 (283)
... .....+|||+|||.++++++|+++|+.||.|..|++..+. +|+++|||||+|.+.++|.+|
T Consensus 82 ~~~---------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~A 145 (562)
T TIGR01628 82 SLR---------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAA 145 (562)
T ss_pred ccc---------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHH
Confidence 110 1123579999999999999999999999999999999886 788999999999999999999
Q ss_pred HHHcCCccc
Q 023381 274 LDAMNGVVR 282 (283)
Q Consensus 274 l~~lnG~~~ 282 (283)
++.|||..+
T Consensus 146 i~~lng~~~ 154 (562)
T TIGR01628 146 IQKVNGMLL 154 (562)
T ss_pred HHHhcccEe
Confidence 999999753
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.5e-29 Score=216.22 Aligned_cols=155 Identities=28% Similarity=0.463 Sum_probs=140.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCc-cCC--ceeEEe
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ-IGG--RTVKVN 187 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~-i~g--r~l~v~ 187 (283)
+.-++|||.+|..++|.||+.+|++||.|..|.+++|+.++.++|||||.|.+.++|.+|+..||+.. |-| +.|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 44579999999999999999999999999999999999999999999999999999999999998774 444 778888
Q ss_pred cccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCH
Q 023381 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (283)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~ 267 (283)
+++..+..- ...++|||+-|+..++|.+++++|.+||.|++|+|++|. .|.+||||||.|.+.
T Consensus 113 ~Ad~E~er~----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 113 YADGERERI----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTK 175 (510)
T ss_pred ccchhhhcc----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehH
Confidence 887543322 235789999999999999999999999999999999998 799999999999999
Q ss_pred HHHHHHHHHcCCccc
Q 023381 268 EDLQSALDAMNGVVR 282 (283)
Q Consensus 268 ~~A~~Al~~lnG~~~ 282 (283)
+-|..|++.|||...
T Consensus 176 e~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 176 EMAVAAIKALNGTQT 190 (510)
T ss_pred HHHHHHHHhhcccee
Confidence 999999999999754
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=5e-28 Score=196.86 Aligned_cols=154 Identities=27% Similarity=0.527 Sum_probs=142.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
....|.|.=||..+|+++|+.+|...|.|++|+++||+.+|.+.||+||.|-+++||.+|+..+||..+..+.|+|.++.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHH
Q 023381 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (283)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A 270 (283)
+....-+ ...|||.+||..+|..+|.++|++||.|...+|+.|..+|.+||.|||+|...++|
T Consensus 120 PSs~~Ik-----------------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EA 182 (360)
T KOG0145|consen 120 PSSDSIK-----------------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEA 182 (360)
T ss_pred CChhhhc-----------------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHH
Confidence 5432221 24699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcc
Q 023381 271 QSALDAMNGVV 281 (283)
Q Consensus 271 ~~Al~~lnG~~ 281 (283)
..||..|||..
T Consensus 183 e~AIk~lNG~~ 193 (360)
T KOG0145|consen 183 EEAIKGLNGQK 193 (360)
T ss_pred HHHHHhccCCC
Confidence 99999999974
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=6.1e-27 Score=222.20 Aligned_cols=171 Identities=32% Similarity=0.472 Sum_probs=143.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccC----CceeE
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG----GRTVK 185 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~----gr~l~ 185 (283)
...++|||+|||.++++++|+++|+.||.|..+.+.++. +|+++|||||+|.+.++|.+|++.++|..+. |+.+.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 456789999999999999999999999999999999886 7899999999999999999999999999999 99999
Q ss_pred EecccCCCCCCccCCCCc-ccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEe
Q 023381 186 VNFPEVPRGGERAAMGPK-LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264 (283)
Q Consensus 186 v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f 264 (283)
|.++.............. .............+|||+||++.+++++|+++|+.||.|.+++++.+ .+|.++|||||+|
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f 333 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCF 333 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEe
Confidence 988764432211100000 00001112234568999999999999999999999999999999999 5899999999999
Q ss_pred CCHHHHHHHHHHcCCccc
Q 023381 265 ETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 265 ~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|.+|+..|||.++
T Consensus 334 ~~~~~A~~A~~~~~g~~~ 351 (562)
T TIGR01628 334 SNPEEANRAVTEMHGRML 351 (562)
T ss_pred CCHHHHHHHHHHhcCCee
Confidence 999999999999999764
No 12
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=2.1e-27 Score=183.79 Aligned_cols=158 Identities=32% Similarity=0.532 Sum_probs=142.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
.+...+||||||+..++++.|.++|-+.|+|.++++.+|+.+...+||||++|.++++|+-|++.|+...+.||+|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceE-EEEeecCCCCCCccEEEEEeCCH
Q 023381 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETA 267 (283)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-~~i~~~~~~g~~kg~afV~f~~~ 267 (283)
+..... ....+.+|||+||...+++..|.+.|+.||.+.. -.|++++.+|.++|+|||.|.+.
T Consensus 86 as~~~~----------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sf 149 (203)
T KOG0131|consen 86 ASAHQK----------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASF 149 (203)
T ss_pred cccccc----------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhH
Confidence 651111 0112368999999999999999999999998876 48899999999999999999999
Q ss_pred HHHHHHHHHcCCccc
Q 023381 268 EDLQSALDAMNGVVR 282 (283)
Q Consensus 268 ~~A~~Al~~lnG~~~ 282 (283)
+.+.+|+..|||++.
T Consensus 150 easd~ai~s~ngq~l 164 (203)
T KOG0131|consen 150 EASDAAIGSMNGQYL 164 (203)
T ss_pred HHHHHHHHHhccchh
Confidence 999999999999864
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=2.1e-26 Score=216.26 Aligned_cols=168 Identities=25% Similarity=0.385 Sum_probs=133.3
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcC------------CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhC
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAG------------TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G------------~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 175 (283)
.....++|||||||+.+|+++|.++|..++ .|..+.+ ++.+|||||+|.+.++|..|+. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 345678999999999999999999999852 3333333 4568999999999999999996 99
Q ss_pred CCccCCceeEEecccCCCCCCccCC-----CCcc-------cCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCce
Q 023381 176 GSQIGGRTVKVNFPEVPRGGERAAM-----GPKL-------QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL 243 (283)
Q Consensus 176 g~~i~gr~l~v~~a~~~~~~~~~~~-----~~~~-------~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 243 (283)
|..|.|+.|.|..+........... .... ...........++|||+|||+.+++++|+++|+.||.|.
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 9999999999986543321110000 0000 001111234568999999999999999999999999999
Q ss_pred EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 244 ~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++.+..+|.++|||||+|.+.++|..|+..|||..+
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~ 362 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT 362 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999999999999865
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4.5e-26 Score=202.13 Aligned_cols=167 Identities=25% Similarity=0.410 Sum_probs=137.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.+..+|.|+||||.+.+.+|+.+|+.||.|..|.|.+.. .|+-.|||||+|....+|..|++.+||..|+||+|.|+||
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 347789999999999999999999999999999999766 6666799999999999999999999999999999999998
Q ss_pred cCCCCCCcc-------------------------------------------CC--------------CCcccCC-----
Q 023381 190 EVPRGGERA-------------------------------------------AM--------------GPKLQNS----- 207 (283)
Q Consensus 190 ~~~~~~~~~-------------------------------------------~~--------------~~~~~~~----- 207 (283)
..+..-+.. .. .......
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 522100000 00 0000000
Q ss_pred -----------CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023381 208 -----------YQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (283)
Q Consensus 208 -----------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ 276 (283)
.........+|||+|||+++++++|.++|++||.|.++.|+.++.||.++|.|||.|.+...|..||.+
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHh
Confidence 001111237999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 023381 277 M 277 (283)
Q Consensus 277 l 277 (283)
-
T Consensus 354 A 354 (678)
T KOG0127|consen 354 A 354 (678)
T ss_pred c
Confidence 5
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=1.6e-25 Score=210.32 Aligned_cols=173 Identities=19% Similarity=0.268 Sum_probs=139.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
...++|||+|||+.+++++|+++|+.||.|..+.++++..+|.++|||||+|.+.++|..|+..|+|..|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cCCCCCCccCCCC----------ccc-CCCCCCCCCCCeEEEcCCCCCC----------CHHHHHHHhccCCCceEEEEe
Q 023381 190 EVPRGGERAAMGP----------KLQ-NSYQGFVDSPHKIYAGNLGWGL----------TSQGLRDAFQGQPGLLSAKVI 248 (283)
Q Consensus 190 ~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~l~V~nLp~~~----------te~~L~~~F~~~G~i~~~~i~ 248 (283)
............. ... ........+.++|+|.|+.... ..++|+++|++||.|+.|.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 6432211111000 000 0001112356789999996421 236899999999999999998
Q ss_pred ecC---CCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 249 FER---YTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 249 ~~~---~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
++. .++.++|+|||+|.+.++|.+|+..|||..|
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~ 489 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKF 489 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEE
Confidence 753 3456789999999999999999999999865
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.9e-26 Score=202.52 Aligned_cols=169 Identities=26% Similarity=0.402 Sum_probs=143.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccCC
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~~ 192 (283)
.||||++||++++.++|.++|+.+|+|..+.++.+..++..||||||.|.-.+|++.|++...+..++||.|.|+.+...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999988899999999999999999999999999999999999998755
Q ss_pred CCCCccC-CCCcc------cCCC--CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEE
Q 023381 193 RGGERAA-MGPKL------QNSY--QGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263 (283)
Q Consensus 193 ~~~~~~~-~~~~~------~~~~--~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~ 263 (283)
....... ..+.. .... .....+.-+|.|+||||.+.+.+|+.+|+.||.|+.|.|++.. .|+-.|||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEE
Confidence 4333111 11111 1000 1112235689999999999999999999999999999999776 55666999999
Q ss_pred eCCHHHHHHHHHHcCCccc
Q 023381 264 FETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 264 f~~~~~A~~Al~~lnG~~~ 282 (283)
|.+..+|..|++.+||.++
T Consensus 165 fk~~~dA~~Al~~~N~~~i 183 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKI 183 (678)
T ss_pred EeeHHHHHHHHHhccCcee
Confidence 9999999999999999876
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=2.6e-25 Score=206.63 Aligned_cols=166 Identities=16% Similarity=0.220 Sum_probs=133.9
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 110 DEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 110 ~~~~~l~v~nLp~-~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
.+..+|||+|||+ .+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 69999999999999999999998774 69999999999999999999999999999999998
Q ss_pred ccCCCCCCccCC----C--------C--------cccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCC--ceEEE
Q 023381 189 PEVPRGGERAAM----G--------P--------KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG--LLSAK 246 (283)
Q Consensus 189 a~~~~~~~~~~~----~--------~--------~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~~~ 246 (283)
+........... + . ..........++..+|||+|||..+++++|+++|+.||. |..++
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 764321110000 0 0 000011112345679999999999999999999999998 77888
Q ss_pred EeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 247 VIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 247 i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+.... + ..+|+|||+|.+.++|..||..|||..+
T Consensus 428 ~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l 461 (481)
T TIGR01649 428 FFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQL 461 (481)
T ss_pred EecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCcc
Confidence 76443 3 3589999999999999999999999764
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=2.5e-25 Score=206.81 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=129.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhh--CCCccCCceeEEec
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF--DGSQIGGRTVKVNF 188 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~g~~i~gr~l~v~~ 188 (283)
++++|||+|||+++++++|+++|+.||.|.+|.++++ +|||||+|.+.++|.+|++.+ ++..+.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999999853 589999999999999999864 78899999999999
Q ss_pred ccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHH
Q 023381 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (283)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~ 268 (283)
+..+........ ...........+|+|+||++.+++++|+++|+.||.|..|.|+++.. +|+|||+|.+.+
T Consensus 75 s~~~~~~~~~~~-----~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~ 145 (481)
T TIGR01649 75 STSQEIKRDGNS-----DFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVN 145 (481)
T ss_pred cCCcccccCCCC-----cccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHH
Confidence 864432111100 00001111234799999999999999999999999999999987542 478999999999
Q ss_pred HHHHHHHHcCCccc
Q 023381 269 DLQSALDAMNGVVR 282 (283)
Q Consensus 269 ~A~~Al~~lnG~~~ 282 (283)
+|.+|++.|||..+
T Consensus 146 ~A~~A~~~Lng~~i 159 (481)
T TIGR01649 146 SAQHAKAALNGADI 159 (481)
T ss_pred HHHHHHHHhcCCcc
Confidence 99999999999864
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=7.4e-25 Score=203.52 Aligned_cols=144 Identities=24% Similarity=0.469 Sum_probs=125.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccC-CceeEEecc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG-GRTVKVNFP 189 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~-gr~l~v~~a 189 (283)
..++|||+|||+++++++|.++|++||.|..++|++| .+|+++|||||+|.+.++|++|++.||+..+. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4578999999999999999999999999999999999 69999999999999999999999999999885 777777653
Q ss_pred cCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCC-ceEEEEee-cCCCCCCccEEEEEeCCH
Q 023381 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIF-ERYTGRSRGFGFVTFETA 267 (283)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~~~i~~-~~~~g~~kg~afV~f~~~ 267 (283)
. ..++|||+|||+.+++++|.+.|++++. ++.+.+.. ....++++|||||+|.+.
T Consensus 136 ~-----------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~ 192 (578)
T TIGR01648 136 V-----------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESH 192 (578)
T ss_pred c-----------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCH
Confidence 2 2468999999999999999999999864 44444432 234567899999999999
Q ss_pred HHHHHHHHHcC
Q 023381 268 EDLQSALDAMN 278 (283)
Q Consensus 268 ~~A~~Al~~ln 278 (283)
++|..|++.|+
T Consensus 193 edAa~AirkL~ 203 (578)
T TIGR01648 193 RAAAMARRKLM 203 (578)
T ss_pred HHHHHHHHHhh
Confidence 99999998875
No 20
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=4.9e-25 Score=191.50 Aligned_cols=163 Identities=22% Similarity=0.356 Sum_probs=131.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCcc-CCceeEEecc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI-GGRTVKVNFP 189 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i-~gr~l~v~~a 189 (283)
..+.||||.||.++.|++|.-+|++.|+|-.++++.|+.+|.+||||||.|.+.+.|+.|++.||+..| .|+.|.|..+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 456799999999999999999999999999999999999999999999999999999999999999988 4888888764
Q ss_pred cCC-------------------------------------CCCCccC---------------------------------
Q 023381 190 EVP-------------------------------------RGGERAA--------------------------------- 199 (283)
Q Consensus 190 ~~~-------------------------------------~~~~~~~--------------------------------- 199 (283)
... ....+..
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 310 0000000
Q ss_pred --CCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHc
Q 023381 200 --MGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (283)
Q Consensus 200 --~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~l 277 (283)
................+.|||+||+.++|++.|+++|++||.|.+|+.++ .||||.|.+.++|.+|++.+
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r--------DYaFVHf~eR~davkAm~~~ 313 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR--------DYAFVHFAEREDAVKAMKET 313 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc--------ceeEEeecchHHHHHHHHHh
Confidence 00000000011122347899999999999999999999999999998874 49999999999999999999
Q ss_pred CCcc
Q 023381 278 NGVV 281 (283)
Q Consensus 278 nG~~ 281 (283)
||+.
T Consensus 314 ngke 317 (506)
T KOG0117|consen 314 NGKE 317 (506)
T ss_pred cCce
Confidence 9975
No 21
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=4.4e-25 Score=187.41 Aligned_cols=161 Identities=21% Similarity=0.442 Sum_probs=139.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccC
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~ 191 (283)
-++||||.+.++..|+.|+.-|..||+|++|.+-.|..|++++|||||+|+-++.|..|++.+||..++||.|+|.++..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999986431
Q ss_pred CCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHH
Q 023381 192 PRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271 (283)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~ 271 (283)
-.- .+..- ......-..-++|||..+..+++++||+.+|+.||.|+.|.+-+++..+.+||||||+|.+..+-.
T Consensus 193 mpQ--AQpiI----D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 193 MPQ--AQPII----DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred Ccc--cchHH----HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 110 00000 000011123478999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHcC
Q 023381 272 SALDAMN 278 (283)
Q Consensus 272 ~Al~~ln 278 (283)
.|+..||
T Consensus 267 eAiasMN 273 (544)
T KOG0124|consen 267 EAIASMN 273 (544)
T ss_pred HHhhhcc
Confidence 9999887
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=3.7e-23 Score=191.84 Aligned_cols=167 Identities=26% Similarity=0.386 Sum_probs=133.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccC
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~ 191 (283)
.++|||+|||+.+++++|+++|+.||.|..|.++++..+|+++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999998999999999999999999999999999999999999999642
Q ss_pred CCCCCcc-------------------------------CC---C---Ccc----------------c-------------
Q 023381 192 PRGGERA-------------------------------AM---G---PKL----------------Q------------- 205 (283)
Q Consensus 192 ~~~~~~~-------------------------------~~---~---~~~----------------~------------- 205 (283)
....... .. . ... .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 1100000 00 0 000 0
Q ss_pred ----C-CC--CCCCCCCCeEEEcCCCCCCC----------HHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHH
Q 023381 206 ----N-SY--QGFVDSPHKIYAGNLGWGLT----------SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (283)
Q Consensus 206 ----~-~~--~~~~~~~~~l~V~nLp~~~t----------e~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~ 268 (283)
. .. .........|+|.||....+ .+||++.|++||.|+.+.|.. +...|++||+|.+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCHH
Confidence 0 00 00123457899999965544 368999999999999999863 356799999999999
Q ss_pred HHHHHHHHcCCccc
Q 023381 269 DLQSALDAMNGVVR 282 (283)
Q Consensus 269 ~A~~Al~~lnG~~~ 282 (283)
+|..|++.|||.+|
T Consensus 422 ~A~~A~~~lnGr~f 435 (457)
T TIGR01622 422 AALAAFQALNGRYF 435 (457)
T ss_pred HHHHHHHHhcCccc
Confidence 99999999999876
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=1.4e-23 Score=195.12 Aligned_cols=154 Identities=26% Similarity=0.362 Sum_probs=126.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEE-ecCCCCCceeEEEEEECCHHHHHHHHHhhCC--CccCCcee
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIV-YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG--SQIGGRTV 184 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~-i~~i~i~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g--~~i~gr~l 184 (283)
....++|||+|||.++++++|.++|.+++. +..+.+. .....++++|||||+|.+.++|..|++.++. ..++|+.|
T Consensus 135 S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I 214 (578)
T TIGR01648 135 SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVI 214 (578)
T ss_pred cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceE
Confidence 445789999999999999999999999864 4444333 3334578899999999999999999988753 46889999
Q ss_pred EEecccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccC--CCceEEEEeecCCCCCCccEEEE
Q 023381 185 KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQ--PGLLSAKVIFERYTGRSRGFGFV 262 (283)
Q Consensus 185 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~~~i~~~~~~g~~kg~afV 262 (283)
.|+|+........ ......++|||+||++.+++++|+++|+.| |.|+.|.++ ++||||
T Consensus 215 ~VdwA~p~~~~d~------------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFV 274 (578)
T TIGR01648 215 AVDWAEPEEEVDE------------DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFV 274 (578)
T ss_pred EEEeecccccccc------------cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEE
Confidence 9999875432111 112234789999999999999999999999 999999875 569999
Q ss_pred EeCCHHHHHHHHHHcCCccc
Q 023381 263 TFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 263 ~f~~~~~A~~Al~~lnG~~~ 282 (283)
+|.+.++|.+|++.|||..+
T Consensus 275 eF~s~e~A~kAi~~lnG~~i 294 (578)
T TIGR01648 275 HFEDREDAVKAMDELNGKEL 294 (578)
T ss_pred EeCCHHHHHHHHHHhCCCEE
Confidence 99999999999999999865
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=5.8e-23 Score=167.41 Aligned_cols=171 Identities=30% Similarity=0.449 Sum_probs=141.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCC--ceeEEec
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNF 188 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g--r~l~v~~ 188 (283)
....|||.+||..+|..+|+.+|++||.|..-+|..|..+|.+||.+||-|....+|+.|++.|||..=.| .+|.|.+
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 45579999999999999999999999999999999999999999999999999999999999999998776 4688888
Q ss_pred ccCCCCCCc----------------cCCC----------------------Cccc--------CCCCCCCCCCCeEEEcC
Q 023381 189 PEVPRGGER----------------AAMG----------------------PKLQ--------NSYQGFVDSPHKIYAGN 222 (283)
Q Consensus 189 a~~~~~~~~----------------~~~~----------------------~~~~--------~~~~~~~~~~~~l~V~n 222 (283)
+..+..... .+.. +-.. ...++.....-+|||-|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 763211000 0000 0000 00011122346899999
Q ss_pred CCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 223 LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 223 Lp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
|..+++|.-|+++|.+||.|..++|++|..+++.||||||.+.+.++|..|+..|||..
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~ 344 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 344 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999974
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=8.1e-23 Score=181.90 Aligned_cols=139 Identities=29% Similarity=0.522 Sum_probs=128.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccCC
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~~ 192 (283)
..|||| +++|+..|.+.|+.+|++.++++.+|. | +.|||||.|.++.+|.+|++.+|...+.|+++++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368998 999999999999999999999999999 6 9999999999999999999999999999999999997622
Q ss_pred CCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHH
Q 023381 193 RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272 (283)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~ 272 (283)
. ..|||.||+..++..+|.++|+.||.|++|++..+. .| ++|| ||+|.+.++|.+
T Consensus 76 ~----------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ 130 (369)
T KOG0123|consen 76 P----------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKK 130 (369)
T ss_pred C----------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHH
Confidence 2 129999999999999999999999999999999987 45 8999 999999999999
Q ss_pred HHHHcCCccc
Q 023381 273 ALDAMNGVVR 282 (283)
Q Consensus 273 Al~~lnG~~~ 282 (283)
|+..|||.+.
T Consensus 131 ai~~~ng~ll 140 (369)
T KOG0123|consen 131 AIEKLNGMLL 140 (369)
T ss_pred HHHHhcCccc
Confidence 9999999864
No 26
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.90 E-value=1.7e-23 Score=172.96 Aligned_cols=135 Identities=27% Similarity=0.517 Sum_probs=124.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccCC
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~~ 192 (283)
..|||||||..+++.+|+.+|++||+|..|.|+ |.||||..++...+..|++.|+|..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 368999999999999999999999999999998 679999999999999999999999999999999976633
Q ss_pred CCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHH
Q 023381 193 RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272 (283)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~ 272 (283)
.....+|+|+|+...++.++|+..|++||.|.+|.|+ |+|+||.|...++|..
T Consensus 75 -------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kdy~fvh~d~~eda~~ 127 (346)
T KOG0109|consen 75 -------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KDYAFVHFDRAEDAVE 127 (346)
T ss_pred -------------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeee--------cceeEEEEeeccchHH
Confidence 1234689999999999999999999999999999998 5699999999999999
Q ss_pred HHHHcCCccc
Q 023381 273 ALDAMNGVVR 282 (283)
Q Consensus 273 Al~~lnG~~~ 282 (283)
|++.|||..|
T Consensus 128 air~l~~~~~ 137 (346)
T KOG0109|consen 128 AIRGLDNTEF 137 (346)
T ss_pred HHhccccccc
Confidence 9999999876
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=3.1e-22 Score=182.96 Aligned_cols=158 Identities=29% Similarity=0.452 Sum_probs=133.1
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC---CCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccC
Q 023381 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT---DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (283)
Q Consensus 115 l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~ 191 (283)
|||.||+++++.++|...|..+|.|..+.|...+.. -.+.|||||+|.+.++|+.|++.|+|..|+||.|.|.++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 999999999999999999999999999988654422 13569999999999999999999999999999999999872
Q ss_pred CCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHH
Q 023381 192 PRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271 (283)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~ 271 (283)
.+..... .. ........+|.|+|+|+.++..+++++|..||.+..|+|++....+.++|||||+|.++.+|.
T Consensus 598 k~~~~~g---K~-----~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~ 669 (725)
T KOG0110|consen 598 KPASTVG---KK-----KSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAK 669 (725)
T ss_pred ccccccc---cc-----cccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHH
Confidence 2221111 11 111122578999999999999999999999999999999988666778999999999999999
Q ss_pred HHHHHcCCc
Q 023381 272 SALDAMNGV 280 (283)
Q Consensus 272 ~Al~~lnG~ 280 (283)
.|+..|.++
T Consensus 670 nA~~al~ST 678 (725)
T KOG0110|consen 670 NAFDALGST 678 (725)
T ss_pred HHHHhhccc
Confidence 999988754
No 28
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=2.9e-21 Score=158.07 Aligned_cols=173 Identities=27% Similarity=0.423 Sum_probs=141.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCcc-CC--cee
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI-GG--RTV 184 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i-~g--r~l 184 (283)
...+.++||||.|.+.-.|+|++++|..||.|.+|.+.+.. +|.++|+|||.|.+.-+|..||..|||..- -| ..|
T Consensus 15 rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSL 93 (371)
T KOG0146|consen 15 RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSL 93 (371)
T ss_pred CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccce
Confidence 33467899999999999999999999999999999999887 899999999999999999999999999854 34 568
Q ss_pred EEecccCCC-----------------------------------------------------------------------
Q 023381 185 KVNFPEVPR----------------------------------------------------------------------- 193 (283)
Q Consensus 185 ~v~~a~~~~----------------------------------------------------------------------- 193 (283)
.|.+++..+
T Consensus 94 VVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ang 173 (371)
T KOG0146|consen 94 VVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANG 173 (371)
T ss_pred EEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcc
Confidence 888875000
Q ss_pred ------------------------------------------CCCcc------------------CC-------------
Q 023381 194 ------------------------------------------GGERA------------------AM------------- 200 (283)
Q Consensus 194 ------------------------------------------~~~~~------------------~~------------- 200 (283)
..... ..
T Consensus 174 l~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y 253 (371)
T KOG0146|consen 174 LAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQY 253 (371)
T ss_pred cccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHH
Confidence 00000 00
Q ss_pred -----------------CCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEE
Q 023381 201 -----------------GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263 (283)
Q Consensus 201 -----------------~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~ 263 (283)
.+..-.......+.+|.|||-.||...++.+|.+.|-.||.|++.+++.|+.|+.+|-||||.
T Consensus 254 ~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVS 333 (371)
T KOG0146|consen 254 AAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVS 333 (371)
T ss_pred hhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEe
Confidence 000000011223456899999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHcCCcc
Q 023381 264 FETAEDLQSALDAMNGVV 281 (283)
Q Consensus 264 f~~~~~A~~Al~~lnG~~ 281 (283)
|+|+.+|+.||.+|||+.
T Consensus 334 fDNp~SaQaAIqAMNGFQ 351 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQ 351 (371)
T ss_pred cCCchhHHHHHHHhcchh
Confidence 999999999999999975
No 29
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.9e-20 Score=145.55 Aligned_cols=163 Identities=22% Similarity=0.293 Sum_probs=133.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
...++|||+|||.++.+.+|+++|-+||.|..|.+... ....+||||+|++..+|+.|+..-+|..++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999988432 234689999999999999999988999999999999998
Q ss_pred cCCCCCCccCCC-----C----cccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEE
Q 023381 190 EVPRGGERAAMG-----P----KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFG 260 (283)
Q Consensus 190 ~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~a 260 (283)
............ . ...........+..+|.|.+||...+++||+++..+.|.|....+.+| |++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~G 153 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVG 153 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cce
Confidence 755432221110 0 001111222345678999999999999999999999999999998876 379
Q ss_pred EEEeCCHHHHHHHHHHcCCccc
Q 023381 261 FVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 261 fV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.|+|...++..-|++.|+.++|
T Consensus 154 vV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeeeehhhHHHHHHhhccccc
Confidence 9999999999999999988776
No 30
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.85 E-value=3.9e-22 Score=177.84 Aligned_cols=170 Identities=28% Similarity=0.489 Sum_probs=144.9
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
..+++.+++|+-.|+...+.-+|.+||+.+|+|..|+++.|+.+++++|.|||+|.+.+.+..|+. |.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 345567899999999999999999999999999999999999999999999999999999999996 8999999999999
Q ss_pred ecccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCC
Q 023381 187 NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266 (283)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~ 266 (283)
......+.... ...+.. ...+...+..+|||+||..++++++|+.+|+.||.|..|.+.+|..+|.+||||||+|.+
T Consensus 253 q~sEaeknr~a-~~s~a~--~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 253 QLSEAEKNRAA-NASPAL--QGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred cccHHHHHHHH-hccccc--cccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 87654333211 111111 111222233449999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCc
Q 023381 267 AEDLQSALDAMNGV 280 (283)
Q Consensus 267 ~~~A~~Al~~lnG~ 280 (283)
.++|.+|+..|||.
T Consensus 330 ~~~ar~a~e~lngf 343 (549)
T KOG0147|consen 330 KEDARKALEQLNGF 343 (549)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999999993
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=1e-20 Score=164.13 Aligned_cols=171 Identities=30% Similarity=0.444 Sum_probs=140.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCc-cCC--ceeEE
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ-IGG--RTVKV 186 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~-i~g--r~l~v 186 (283)
.++++||||.|++.+||.+++.+|.+||.|++|+|.||. .+.+||||||.|.+.+.|..|++.|||.. +.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 457899999999999999999999999999999999998 89999999999999999999999999984 555 57999
Q ss_pred ecccCCCCCCcc--------------------------------------------------------------------
Q 023381 187 NFPEVPRGGERA-------------------------------------------------------------------- 198 (283)
Q Consensus 187 ~~a~~~~~~~~~-------------------------------------------------------------------- 198 (283)
.|++.++.+...
T Consensus 201 kFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~ 280 (510)
T KOG0144|consen 201 KFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAAL 280 (510)
T ss_pred EecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHh
Confidence 998611100000
Q ss_pred ---------------C-------C-----CC---------c---------------------------------------
Q 023381 199 ---------------A-------M-----GP---------K--------------------------------------- 203 (283)
Q Consensus 199 ---------------~-------~-----~~---------~--------------------------------------- 203 (283)
. . .+ .
T Consensus 281 ~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~ 360 (510)
T KOG0144|consen 281 AAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPV 360 (510)
T ss_pred hhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcc
Confidence 0 0 00 0
Q ss_pred ----------------------------------------------------ccCCCCCCCCCCCeEEEcCCCCCCCHHH
Q 023381 204 ----------------------------------------------------LQNSYQGFVDSPHKIYAGNLGWGLTSQG 231 (283)
Q Consensus 204 ----------------------------------------------------~~~~~~~~~~~~~~l~V~nLp~~~te~~ 231 (283)
.........+.+..|||.+||.+..+.+
T Consensus 361 aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~ 440 (510)
T KOG0144|consen 361 AASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQD 440 (510)
T ss_pred cccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHH
Confidence 0000011112335899999999999999
Q ss_pred HHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 232 L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
|...|..||.|...++..|+.||.+|=|+||.|++.-+|..||..|||.-
T Consensus 441 l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQ 490 (510)
T KOG0144|consen 441 LIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQ 490 (510)
T ss_pred HHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999999999964
No 32
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.84 E-value=7.8e-21 Score=163.81 Aligned_cols=153 Identities=28% Similarity=0.508 Sum_probs=136.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
+..+|||++|+++++++.|+..|.+||.|..+.+.+|..+++++||+||+|.+...+..++.. ....|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678999999999999999999999999999999999999999999999999999999999983 6778999999998776
Q ss_pred CCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHH
Q 023381 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (283)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A 270 (283)
+......... .....++||++||..+++++++++|.+||.|..+.++.|..+.+.+||+||.|.+.+.+
T Consensus 84 ~r~~~~~~~~-----------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sV 152 (311)
T KOG4205|consen 84 SREDQTKVGR-----------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSV 152 (311)
T ss_pred Cccccccccc-----------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccc
Confidence 5443333221 12457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 023381 271 QSALD 275 (283)
Q Consensus 271 ~~Al~ 275 (283)
.+++.
T Consensus 153 dkv~~ 157 (311)
T KOG4205|consen 153 DKVTL 157 (311)
T ss_pred ceecc
Confidence 98874
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=6.4e-20 Score=163.37 Aligned_cols=155 Identities=31% Similarity=0.520 Sum_probs=135.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccCCCC
Q 023381 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRG 194 (283)
Q Consensus 115 l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~~~~ 194 (283)
|||.||+.+++...|.++|+.||.|.+|++..+. .| ++|| ||+|.+++.|++|++.+||..+.|++|.|........
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999987 45 9999 9999999999999999999999999999987654333
Q ss_pred CCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHH
Q 023381 195 GERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274 (283)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al 274 (283)
....... .......++|.|++...+++.|..+|..+|.|..+.++.+. .|.++|||||.|.+.++|..|+
T Consensus 156 r~~~~~~---------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av 225 (369)
T KOG0123|consen 156 REAPLGE---------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAV 225 (369)
T ss_pred hcccccc---------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHH
Confidence 2221111 11223568999999999999999999999999999999887 6779999999999999999999
Q ss_pred HHcCCccc
Q 023381 275 DAMNGVVR 282 (283)
Q Consensus 275 ~~lnG~~~ 282 (283)
+.|||..+
T Consensus 226 ~~l~~~~~ 233 (369)
T KOG0123|consen 226 ETLNGKIF 233 (369)
T ss_pred HhccCCcC
Confidence 99999864
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.7e-20 Score=151.88 Aligned_cols=126 Identities=34% Similarity=0.622 Sum_probs=108.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
+++.+|||||||..++||+-|..+|++.|+|..++++.+ .++|.+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~w 47 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNW 47 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhcccc
Confidence 456789999999999999999999999999999999866 456666
Q ss_pred ccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHH
Q 023381 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (283)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~ 268 (283)
+..+....... ...-..+||+-|...++.++|++.|.+||+|.+++|++|..|+++||||||.|-+.+
T Consensus 48 a~~p~nQsk~t------------~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~ 115 (321)
T KOG0148|consen 48 ATAPGNQSKPT------------SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKE 115 (321)
T ss_pred ccCcccCCCCc------------cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchH
Confidence 65442111111 111346999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcc
Q 023381 269 DLQSALDAMNGVV 281 (283)
Q Consensus 269 ~A~~Al~~lnG~~ 281 (283)
+|+.||..|||++
T Consensus 116 dAEnAI~~MnGqW 128 (321)
T KOG0148|consen 116 DAENAIQQMNGQW 128 (321)
T ss_pred HHHHHHHHhCCee
Confidence 9999999999986
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.81 E-value=2.1e-18 Score=161.00 Aligned_cols=80 Identities=19% Similarity=0.415 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
..++|||+|||+++++++|+++|+.||.|.++++.++..+|+++|||||+|.+.++|.+|++.+||..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999998754
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.78 E-value=1.1e-17 Score=134.71 Aligned_cols=165 Identities=22% Similarity=0.354 Sum_probs=133.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHH----HHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCcee
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAE----VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~----~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l 184 (283)
..+..||||.||+..+..++|++ +|++||.|..|... .+.+.||.|||.|.+.+.|-.|++.|+|..+.|+.+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34566999999999999999988 99999999998775 257889999999999999999999999999999999
Q ss_pred EEecccCCCCCCcc------CC-------------CCcccCC----------C----CCCCCCCCeEEEcCCCCCCCHHH
Q 023381 185 KVNFPEVPRGGERA------AM-------------GPKLQNS----------Y----QGFVDSPHKIYAGNLGWGLTSQG 231 (283)
Q Consensus 185 ~v~~a~~~~~~~~~------~~-------------~~~~~~~----------~----~~~~~~~~~l~V~nLp~~~te~~ 231 (283)
+|.||......-.. .. .+...+. . ....++...+|+.|+|..++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 99998733211000 00 0000000 0 12245678899999999999999
Q ss_pred HHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 232 L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
|..+|.+|++...++.+... ++.|||+|.+...|..|...+.|..
T Consensus 163 l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~ 207 (221)
T KOG4206|consen 163 LSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFK 207 (221)
T ss_pred HHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccce
Confidence 99999999999999988654 6899999999999999999988753
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=1.3e-17 Score=130.11 Aligned_cols=86 Identities=35% Similarity=0.605 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
....++|||+|||+++++++|+++|++||.|..+.++.|..+++++|||||+|.+.++|++|++.+++..|+|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023381 189 PEVPRG 194 (283)
Q Consensus 189 a~~~~~ 194 (283)
+.....
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 875443
No 38
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.75 E-value=4.9e-17 Score=141.54 Aligned_cols=170 Identities=18% Similarity=0.364 Sum_probs=136.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHH-hcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~-~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..++.+||.||||++.+++|+++|. +.|.|..|.+..|. .|++||+|.|+|++++.+++|++.|+...+.||.|.|.-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456799999999999999999998 58999999999887 899999999999999999999999999999999999965
Q ss_pred ccCCC---------------------------------------------CCCccCCCCcc---c---------------
Q 023381 189 PEVPR---------------------------------------------GGERAAMGPKL---Q--------------- 205 (283)
Q Consensus 189 a~~~~---------------------------------------------~~~~~~~~~~~---~--------------- 205 (283)
..... ........... .
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 32100 00000000000 0
Q ss_pred ----CCCCC-CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 206 ----NSYQG-FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 206 ----~~~~~-~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
..... ..+-..++||.||.+.+....|++.|.-.|.|..+.+-.|+ .|.++|++.|+|.++-+|-+||.+|++.
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccC
Confidence 00001 12234689999999999999999999999999999988887 5799999999999999999999999964
Q ss_pred c
Q 023381 281 V 281 (283)
Q Consensus 281 ~ 281 (283)
.
T Consensus 280 g 280 (608)
T KOG4212|consen 280 G 280 (608)
T ss_pred C
Confidence 3
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.73 E-value=1.6e-17 Score=148.65 Aligned_cols=169 Identities=25% Similarity=0.356 Sum_probs=127.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+...||||||.+.+++.+|+..|+.||.|..|.+.+|..+|.++|||||+|.+.++|++|+..|||..|.||.|+|..
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 34556699999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccCCCCCCcc------------------CCC-----------Cc----------------------cc------C-----
Q 023381 189 PEVPRGGERA------------------AMG-----------PK----------------------LQ------N----- 206 (283)
Q Consensus 189 a~~~~~~~~~------------------~~~-----------~~----------------------~~------~----- 206 (283)
-......... ..+ .. .. .
T Consensus 355 v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 434 (549)
T KOG0147|consen 355 VTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPAD 434 (549)
T ss_pred eeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccc
Confidence 3211100000 000 00 00 0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCC----------HHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023381 207 SYQGFVDSPHKIYAGNLGWGLT----------SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (283)
Q Consensus 207 ~~~~~~~~~~~l~V~nLp~~~t----------e~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ 276 (283)
..+....+..++.+.|+-...+ .+|+.+-+.+||+|..|.+-++ +-|+.||.|.+.+.|..|+.+
T Consensus 435 ~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~a 509 (549)
T KOG0147|consen 435 ASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKA 509 (549)
T ss_pred cccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHH
Confidence 0001112234455666633222 4678888999999998877433 238999999999999999999
Q ss_pred cCCccc
Q 023381 277 MNGVVR 282 (283)
Q Consensus 277 lnG~~~ 282 (283)
|||.+|
T Consensus 510 lhgrWF 515 (549)
T KOG0147|consen 510 LHGRWF 515 (549)
T ss_pred Hhhhhh
Confidence 999987
No 40
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.71 E-value=4.7e-16 Score=137.56 Aligned_cols=156 Identities=21% Similarity=0.281 Sum_probs=120.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
....|.+++|||++|+++|.+||+.+ .|+++.+.+. +|+..|-|||+|.+++++++|++. |...+..|-|.|--+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 44568899999999999999999998 5666555544 699999999999999999999994 8889999999998665
Q ss_pred CCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceE-EEEeecCCCCCCccEEEEEeCCHHH
Q 023381 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAED 269 (283)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-~~i~~~~~~g~~kg~afV~f~~~~~ 269 (283)
.......-.. ...........|.+++||+.|+++||.++|+.--.|.. +.++.+. .+++.|-|||+|.+.+.
T Consensus 85 ~~e~d~~~~~------~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 85 GAEADWVMRP------GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQES 157 (510)
T ss_pred CccccccccC------CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHH
Confidence 3332111110 00111134568999999999999999999997754444 3344444 68899999999999999
Q ss_pred HHHHHHHc
Q 023381 270 LQSALDAM 277 (283)
Q Consensus 270 A~~Al~~l 277 (283)
|++|+...
T Consensus 158 ae~Al~rh 165 (510)
T KOG4211|consen 158 AEIALGRH 165 (510)
T ss_pred HHHHHHHH
Confidence 99999754
No 41
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.69 E-value=9.1e-16 Score=130.21 Aligned_cols=167 Identities=17% Similarity=0.252 Sum_probs=132.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceE--------EEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVAS--------AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR 182 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~--------i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr 182 (283)
-...|||.|||.++|-+++.++|+++|.|.+ |.+.++. .|+.+|-|.+.|-..+++..|++.|++..+.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3456999999999999999999999998753 7888887 599999999999999999999999999999999
Q ss_pred eeEEecccCCCCCCccCCCCcc---------------------cCCCCCCCCCCCeEEEcCCCC----CCC-------HH
Q 023381 183 TVKVNFPEVPRGGERAAMGPKL---------------------QNSYQGFVDSPHKIYAGNLGW----GLT-------SQ 230 (283)
Q Consensus 183 ~l~v~~a~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~V~nLp~----~~t-------e~ 230 (283)
.|+|.+|..+..++........ ...........++|.+.|+-. ..+ ++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 9999999855443332221100 001122233457899999853 223 45
Q ss_pred HHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 231 ~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+|++-+.+||.|..+.|.- ..+.|.+-|.|.+.++|..||+.|+|.+|
T Consensus 292 dl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred HHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 6777789999999998873 34578899999999999999999999886
No 42
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=6.6e-17 Score=131.53 Aligned_cols=154 Identities=26% Similarity=0.494 Sum_probs=124.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccCC
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~~ 192 (283)
..+|||+||+.+.+.+|..+|..||.+..+.+. .||+||+|.+..+|..|+..+||..|.|-.+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 368999999999999999999999999999885 689999999999999999999999999988999988743
Q ss_pred CCCCccCCC--Ccc-cCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHH
Q 023381 193 RGGERAAMG--PKL-QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269 (283)
Q Consensus 193 ~~~~~~~~~--~~~-~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~ 269 (283)
........+ ... ...........+.++|.|++..+.+++|.++|..+|.+....+ ..+++||+|...++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 222211111 111 1122222345688999999999999999999999999955544 36789999999999
Q ss_pred HHHHHHHcCCccc
Q 023381 270 LQSALDAMNGVVR 282 (283)
Q Consensus 270 A~~Al~~lnG~~~ 282 (283)
|.+|+..|+|.-+
T Consensus 146 a~ra~~~l~~~~~ 158 (216)
T KOG0106|consen 146 AKRALEKLDGKKL 158 (216)
T ss_pred hhhcchhccchhh
Confidence 9999999998754
No 43
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.69 E-value=7.4e-16 Score=132.45 Aligned_cols=164 Identities=30% Similarity=0.485 Sum_probs=126.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccC
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~ 191 (283)
..+|||+|||+++++++|.++|..||.|..+.+..++.+|+++|||||+|.+.+++..|++.++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999999642
Q ss_pred ---CCCCCc----cCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEe
Q 023381 192 ---PRGGER----AAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264 (283)
Q Consensus 192 ---~~~~~~----~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f 264 (283)
...... ....................+++.+++..++..++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 111111 0001111122233345567899999999999999999999999997777665554444444555555
Q ss_pred CCHHHHHHHHH
Q 023381 265 ETAEDLQSALD 275 (283)
Q Consensus 265 ~~~~~A~~Al~ 275 (283)
.....+..+..
T Consensus 275 ~~~~~~~~~~~ 285 (306)
T COG0724 275 EASKDALESNS 285 (306)
T ss_pred hHHHhhhhhhc
Confidence 55555544443
No 44
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=6.5e-16 Score=105.42 Aligned_cols=70 Identities=34% Similarity=0.715 Sum_probs=67.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeE
Q 023381 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (283)
Q Consensus 115 l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~ 185 (283)
|||+|||.++++++|+++|++||.|..+.+..+ .++..+|||||+|.+.++|++|++.++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 5899999999999999999999999999999999885
No 45
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.64 E-value=1e-14 Score=116.90 Aligned_cols=169 Identities=18% Similarity=0.300 Sum_probs=123.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC-CCceeEEEEEECCHHHHHHHHHhhCCCccC---CceeE
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT-DRSRGFGFVTMGSVEEAKEAIRLFDGSQIG---GRTVK 185 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~g~~i~---gr~l~ 185 (283)
+.-+||||.+||.++..-+|..+|..|-.-+...+...... ...+-+||++|.+..+|.+|+..|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 35679999999999999999999999977777766443322 234579999999999999999999999996 67899
Q ss_pred EecccCCCCCCccCC-C-Ccc-------------c------------CCC--------C---------------------
Q 023381 186 VNFPEVPRGGERAAM-G-PKL-------------Q------------NSY--------Q--------------------- 209 (283)
Q Consensus 186 v~~a~~~~~~~~~~~-~-~~~-------------~------------~~~--------~--------------------- 209 (283)
+++++......+... + +.. . ... .
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 998763211111000 0 000 0 000 0
Q ss_pred -------------CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023381 210 -------------GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (283)
Q Consensus 210 -------------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ 276 (283)
.....-.+|||.||...++|++|+.+|+.|.+....+|... ...-.||++|.+.+.|..|+..
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHH
Confidence 00000138999999999999999999999988887776422 2245799999999999999999
Q ss_pred cCCccc
Q 023381 277 MNGVVR 282 (283)
Q Consensus 277 lnG~~~ 282 (283)
|.|.+.
T Consensus 268 lqg~~~ 273 (284)
T KOG1457|consen 268 LQGNLL 273 (284)
T ss_pred hhccee
Confidence 998753
No 46
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=1.2e-15 Score=119.05 Aligned_cols=70 Identities=41% Similarity=0.701 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++.|||..+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i 101 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL 101 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3457899999999999999999999999999999999999999999999999999999999999998753
No 47
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.5e-15 Score=122.88 Aligned_cols=80 Identities=29% Similarity=0.549 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
-.++||||+|+|++..+.|+++|++||.|....|+.|+.+|+++|||||+|++.+.|.+|++. -.-.|+||+-.+.+|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 356799999999999999999999999999999999999999999999999999999999995 4558999999999886
Q ss_pred C
Q 023381 191 V 191 (283)
Q Consensus 191 ~ 191 (283)
.
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 48
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=4.6e-15 Score=120.52 Aligned_cols=85 Identities=28% Similarity=0.435 Sum_probs=80.4
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
..++..+|-|.||+.+++|.+|+++|..||.|.+|.+.+|+.||.++|||||.|.+.++|.+|++.|||.-++.-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34477899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 023381 188 FPEVP 192 (283)
Q Consensus 188 ~a~~~ 192 (283)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 98753
No 49
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=8.8e-15 Score=134.57 Aligned_cols=168 Identities=24% Similarity=0.286 Sum_probs=126.3
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
.....+.++|+|||..+..++|...|..||+|.++.+. . .| --|+|+|.+..+|++|++.+....+...++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-cc---ceeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 34456789999999999999999999999999999553 1 12 238999999999999999999999988888888
Q ss_pred cccCCCCC-----Ccc----------------CCCCcc-cCCC-----------CCCCCCCCeEEEcCCCCCCCHHHHHH
Q 023381 188 FPEVPRGG-----ERA----------------AMGPKL-QNSY-----------QGFVDSPHKIYAGNLGWGLTSQGLRD 234 (283)
Q Consensus 188 ~a~~~~~~-----~~~----------------~~~~~~-~~~~-----------~~~~~~~~~l~V~nLp~~~te~~L~~ 234 (283)
|+...... ... ...... .... ........+|||.||++.++.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 76411111 000 000000 0000 01111224499999999999999999
Q ss_pred HhccCCCceEEEEeecCCC---CCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 235 AFQGQPGLLSAKVIFERYT---GRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 235 ~F~~~G~i~~~~i~~~~~~---g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
+|...|.|..+.|...+.. -.+.|||||+|.+.++|+.|++.|+|++
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv 584 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTV 584 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCce
Confidence 9999999999988766532 1356999999999999999999999876
No 50
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=8.3e-15 Score=100.15 Aligned_cols=70 Identities=37% Similarity=0.701 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeE
Q 023381 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (283)
Q Consensus 115 l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~ 185 (283)
|||+|||+.+++++|.++|+.||.|..+.+..++. +..+|+|||+|.+.++|..|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 99999999999999999999999888999999874
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=8.7e-15 Score=99.77 Aligned_cols=64 Identities=39% Similarity=0.615 Sum_probs=60.8
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 218 l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
|||+|||..+++++|+++|++||.|..+.+..+ .++..+|+|||+|.+.++|.+|++.|||..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~ 64 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKI 64 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEE
Confidence 799999999999999999999999999999988 5889999999999999999999999999764
No 52
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1e-14 Score=107.10 Aligned_cols=83 Identities=27% Similarity=0.551 Sum_probs=78.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
....+.|||||||++-++|++|.++|+++|.|+.|.+-.|+.+..+.|||||+|...++|..|++-++|..++.|.|+++
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 023381 188 FPE 190 (283)
Q Consensus 188 ~a~ 190 (283)
|..
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 865
No 53
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=3.2e-14 Score=121.61 Aligned_cols=81 Identities=19% Similarity=0.425 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
.+...+|||..+..+.++++|+..|+.||+|..|.+-++...+.++||+||+|.+......|+..+|=..++|..|+|..
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 34678999999999999999999999999999999999998889999999999999999999999999999999999976
Q ss_pred c
Q 023381 189 P 189 (283)
Q Consensus 189 a 189 (283)
+
T Consensus 287 ~ 287 (544)
T KOG0124|consen 287 C 287 (544)
T ss_pred c
Confidence 4
No 54
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.5e-14 Score=111.96 Aligned_cols=78 Identities=28% Similarity=0.515 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
-.++||||||+..+++.+|+..|..||++..|+|-++. .|||||+|++..||..|+..|||..|.|..|.|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36789999999999999999999999999999997654 8999999999999999999999999999999999987
Q ss_pred CCC
Q 023381 191 VPR 193 (283)
Q Consensus 191 ~~~ 193 (283)
...
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 543
No 55
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.8e-14 Score=118.44 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccC
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~ 191 (283)
.++|||+|||+.+++++|+++|+.||.|.+|+|+++.. .+|||||+|+++++|..|+. |+|..|.||.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998863 47999999999999999996 899999999999998763
No 56
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.54 E-value=1.3e-14 Score=115.10 Aligned_cols=85 Identities=32% Similarity=0.532 Sum_probs=79.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
+.+...+|.|-||.+.++.++|+.+|++||.|-.|.|.+|..|+.++|||||-|....+|+.|+..|+|..|+|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 023381 188 FPEVP 192 (283)
Q Consensus 188 ~a~~~ 192 (283)
+|.-.
T Consensus 89 ~aryg 93 (256)
T KOG4207|consen 89 MARYG 93 (256)
T ss_pred hhhcC
Confidence 98743
No 57
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.2e-14 Score=117.57 Aligned_cols=64 Identities=39% Similarity=0.625 Sum_probs=60.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ln 278 (283)
-.+|||+||+|.+..+.|+++|++||+|++..|+.|+.+|++||||||+|.+.++|.+|++.-|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 3689999999999999999999999999999999999999999999999999999999997654
No 58
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.53 E-value=2.5e-13 Score=117.80 Aligned_cols=160 Identities=19% Similarity=0.308 Sum_probs=128.3
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 112 AARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 112 ~~~l~v~nLp~~-~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
...|.|.||..+ +|.+.|..+|+-||.|.+|.|.+++ +--|.|+|.+...|..|+..|+|..|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 567888888654 9999999999999999999999887 4679999999999999999999999999999999987
Q ss_pred CCCCCCccCC------------------CCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCC
Q 023381 191 VPRGGERAAM------------------GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY 252 (283)
Q Consensus 191 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~ 252 (283)
-....-.... ......++....++..+|...|+|..++|++|+..|...|..+......
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff--- 448 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF--- 448 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---
Confidence 3322111100 1111223333446667999999999999999999999999887766553
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 253 TGRSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 253 ~g~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
++.+-+|.+.+.+.++|..|+..+|+.
T Consensus 449 -~kd~kmal~q~~sveeA~~ali~~hnh 475 (492)
T KOG1190|consen 449 -QKDRKMALPQLESVEEAIQALIDLHNH 475 (492)
T ss_pred -CCCcceeecccCChhHhhhhccccccc
Confidence 344669999999999999999888654
No 59
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.3e-15 Score=118.44 Aligned_cols=85 Identities=27% Similarity=0.548 Sum_probs=79.2
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
..-.+..-|||||||++.||.+|.-.|++||.|..|.++||..||+++||||+.|++.++.-.|+..|||..|.||.|+|
T Consensus 30 ~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 30 QEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred hhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccC
Q 023381 187 NFPEV 191 (283)
Q Consensus 187 ~~a~~ 191 (283)
+....
T Consensus 110 DHv~~ 114 (219)
T KOG0126|consen 110 DHVSN 114 (219)
T ss_pred eeccc
Confidence 87553
No 60
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.5e-14 Score=128.62 Aligned_cols=173 Identities=21% Similarity=0.265 Sum_probs=132.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.....+||++||...++.++.++...||++....++.|..+|.++||||.+|.+......|+..|||+.++++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCccCCC--C----cccC-CCCCCCCCCCeEEEcCCCC--CC-C-------HHHHHHHhccCCCceEEEEeec-C
Q 023381 190 EVPRGGERAAMG--P----KLQN-SYQGFVDSPHKIYAGNLGW--GL-T-------SQGLRDAFQGQPGLLSAKVIFE-R 251 (283)
Q Consensus 190 ~~~~~~~~~~~~--~----~~~~-~~~~~~~~~~~l~V~nLp~--~~-t-------e~~L~~~F~~~G~i~~~~i~~~-~ 251 (283)
-........... . .... ..+....+...|...|+-. .+ . -++++.-+.+||.|..|.|.++ .
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 654332222211 0 0000 0122223445555555421 11 1 2456677799999999999877 2
Q ss_pred --CCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 252 --YTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 252 --~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....+.|..||+|.+.+++++|.++|+|..|
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF 479 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKF 479 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCcee
Confidence 2234678899999999999999999999876
No 61
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.52 E-value=8.4e-14 Score=123.63 Aligned_cols=82 Identities=32% Similarity=0.545 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCC--ceeEEec
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNF 188 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g--r~l~v~~ 188 (283)
..++|||+|||+++++++|+++|++||.|..+.|++++.+++++|||||+|.+.++|.+|++.|++..+.| +.|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999876 6889988
Q ss_pred ccCC
Q 023381 189 PEVP 192 (283)
Q Consensus 189 a~~~ 192 (283)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 8754
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=4.3e-14 Score=119.34 Aligned_cols=82 Identities=33% Similarity=0.602 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
.+-.++|+|.|||+...+.||+.+|++||+|.+|.|+.+. .-+||||||+|++.+||++|-.+|||..+.||+|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 4456799999999999999999999999999999999885 56799999999999999999999999999999999999
Q ss_pred ccCC
Q 023381 189 PEVP 192 (283)
Q Consensus 189 a~~~ 192 (283)
+...
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8744
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=6.5e-14 Score=113.87 Aligned_cols=68 Identities=28% Similarity=0.451 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
...++|.|.||+.++++++|.++|.+||.|..+.+.+|+.||.+||||||.|.+.++|.+||..|||.
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~ 254 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGY 254 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCc
Confidence 35688999999999999999999999999999999999999999999999999999999999999996
No 64
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=6.3e-14 Score=103.87 Aligned_cols=87 Identities=24% Similarity=0.392 Sum_probs=81.3
Q ss_pred cccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeE
Q 023381 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (283)
Q Consensus 106 ~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~ 185 (283)
...+.+...|||.++...++|++|.+.|..||+|+++++..|..||-.+|||+|+|++.++|++|+..+||..|.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 34556677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCC
Q 023381 186 VNFPEVP 192 (283)
Q Consensus 186 v~~a~~~ 192 (283)
|+|+-..
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 9998644
No 65
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=1.1e-13 Score=122.52 Aligned_cols=77 Identities=22% Similarity=0.408 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCH--HHHHHHHHhhCCCccCCceeEEec
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV--EEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~--~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
...+||||||++.+++++|+..|..||.|.+|.|++. +| ||||||+|... .++.+|+..|||..|.||.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 4578999999999999999999999999999999944 57 99999999987 789999999999999999999998
Q ss_pred ccC
Q 023381 189 PEV 191 (283)
Q Consensus 189 a~~ 191 (283)
|++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 863
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=1.6e-13 Score=93.69 Aligned_cols=64 Identities=34% Similarity=0.527 Sum_probs=58.6
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 218 l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
|+|+|||+.+++++|+++|+.+|.|..+.+..++. |..+|+|||+|.+.++|.+|+..+||..+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~ 64 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEI 64 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEE
Confidence 79999999999999999999999999999999886 89999999999999999999999987764
No 67
>smart00362 RRM_2 RNA recognition motif.
Probab=99.47 E-value=3.5e-13 Score=91.47 Aligned_cols=72 Identities=40% Similarity=0.759 Sum_probs=67.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 114 ~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
+|||+|||..+++++|+++|..||.+..+.+.++. +.++|+|||+|.+.++|..|++.++|..+.|+.+.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 7889999999999999999999999999999998873
No 68
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=4e-13 Score=95.11 Aligned_cols=79 Identities=27% Similarity=0.467 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
....+.|||+|||+++|.+++.++|++||.|..|++-.. ...+|-|||.|++..+|++|+..|+|..+.++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 345678999999999999999999999999999999533 34589999999999999999999999999999999987
Q ss_pred cc
Q 023381 189 PE 190 (283)
Q Consensus 189 a~ 190 (283)
..
T Consensus 92 yq 93 (124)
T KOG0114|consen 92 YQ 93 (124)
T ss_pred cC
Confidence 54
No 69
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=4.9e-13 Score=110.07 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
...+|||+||++.+|+++|+++|+.||.|.+|+|+++. ..+|+|||+|++++++..|+. |+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999884 445899999999999999996 89999999999998765
No 70
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.2e-13 Score=115.13 Aligned_cols=84 Identities=25% Similarity=0.400 Sum_probs=80.0
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+...|||..|.+-+++++|.-+|+.||+|.+|.+++|..||.+..||||+|.+.+++.+|+-.|++..|+.|+|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 023381 187 NFPE 190 (283)
Q Consensus 187 ~~a~ 190 (283)
+++.
T Consensus 314 DFSQ 317 (479)
T KOG0415|consen 314 DFSQ 317 (479)
T ss_pred ehhh
Confidence 9875
No 71
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.44 E-value=2.4e-13 Score=122.58 Aligned_cols=80 Identities=36% Similarity=0.723 Sum_probs=77.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccCC
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~~ 192 (283)
..|||||+|+++++++|..+|+..|.|..++++.|..+|+++||||++|.+.+++..|++.|+|..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998643
No 72
>smart00360 RRM RNA recognition motif.
Probab=99.44 E-value=7.1e-13 Score=89.61 Aligned_cols=71 Identities=39% Similarity=0.714 Sum_probs=67.0
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 117 VGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 117 v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
|+|||..+++++|+++|+.||.|..+.+..+..+++++|||||+|.+.++|..|++.+++..+.|+.+.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999888789999999999999999999999999999999998873
No 73
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.9e-12 Score=115.66 Aligned_cols=164 Identities=16% Similarity=0.250 Sum_probs=119.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCC--Ccee---EEEEEECCHHHHHHHHHhhCCCccCCcee
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD--RSRG---FGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~--~~~g---~afv~f~~~~~a~~a~~~l~g~~i~gr~l 184 (283)
.-.+.||||+||++++|++|...|..||.+.--.-.+....+ -++| |+|+.|+++..+..-+..+.- ....+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 346789999999999999999999999987533222221112 2466 999999999999887775432 34444
Q ss_pred EEecccCCCCCCccCCCCc------ccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhc-cCCCceEEEEeecCCCCCCc
Q 023381 185 KVNFPEVPRGGERAAMGPK------LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQ-GQPGLLSAKVIFERYTGRSR 257 (283)
Q Consensus 185 ~v~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~~~i~~~~~~g~~k 257 (283)
.+.++.+.-........+. -........++.++|||++||..++-++|..+|. -||.|..+-|=.|++-+..|
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 4433322111110100000 0111234456789999999999999999999998 79999999999998888999
Q ss_pred cEEEEEeCCHHHHHHHHHH
Q 023381 258 GFGFVTFETAEDLQSALDA 276 (283)
Q Consensus 258 g~afV~f~~~~~A~~Al~~ 276 (283)
|-|-|+|.+..+-.+||.+
T Consensus 414 GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcceeeecccHHHHHHHhh
Confidence 9999999999999999975
No 74
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=2.8e-14 Score=111.02 Aligned_cols=69 Identities=28% Similarity=0.494 Sum_probs=65.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...-|||+|||+.+||.||.-+|++||.|++|.+++|+.||+++||||+.|++..+...|+..|||..+
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki 102 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI 102 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee
Confidence 345799999999999999999999999999999999999999999999999999999999999999764
No 75
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.39 E-value=8.8e-13 Score=113.53 Aligned_cols=167 Identities=19% Similarity=0.238 Sum_probs=118.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc----CCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEA----GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~----G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
.-.|.+++||+++++.++..||..- |..+.|.+++.. +|+..|-|||.|..+++|+.|+.+ |...++.|.|.+-
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 3457788999999999999999743 244566666554 799999999999999999999986 7777777777765
Q ss_pred cccCCC--------CCC------ccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceE---EEEeec
Q 023381 188 FPEVPR--------GGE------RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS---AKVIFE 250 (283)
Q Consensus 188 ~a~~~~--------~~~------~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~---~~i~~~ 250 (283)
++.... ... .....................|.+++||+..+.++|.++|..|-.-.. +..+.
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~- 317 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL- 317 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE-
Confidence 543110 000 000000001111111223568999999999999999999988753332 33333
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 251 RYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 251 ~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
...|+..|-|||+|.+.+.|..|....|.++
T Consensus 318 N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~ 348 (508)
T KOG1365|consen 318 NGQGRPSGEAFIQMRNAERARAAAQKCHKKL 348 (508)
T ss_pred cCCCCcChhhhhhhhhhHHHHHHHHHHHHhh
Confidence 3479999999999999999999998877654
No 76
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.39 E-value=3.9e-12 Score=86.71 Aligned_cols=74 Identities=42% Similarity=0.784 Sum_probs=68.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 114 ~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ .++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987744 7799999999999999999999999999999998864
No 77
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=7.1e-13 Score=112.06 Aligned_cols=69 Identities=30% Similarity=0.568 Sum_probs=63.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...+++|+|.|+|+...+.||+.+|++||.|.+|.|+++. ..+||||||+|++.++|++|.++|||.++
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~V 161 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVV 161 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhccee
Confidence 3457899999999999999999999999999999999875 46799999999999999999999999874
No 78
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.1e-13 Score=107.56 Aligned_cols=87 Identities=31% Similarity=0.514 Sum_probs=81.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
....++||||+|..+++|.-|..-|-.||.|..|.+..|..++++||||||+|...++|.+|+..||+..+.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 023381 189 PEVPRGG 195 (283)
Q Consensus 189 a~~~~~~ 195 (283)
+.+.+..
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9866543
No 79
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.37 E-value=8.4e-13 Score=104.86 Aligned_cols=71 Identities=34% Similarity=0.525 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
++....|.|.||-+.++.++|+.+|++||.|.+|.|..|+.|+.++|||||.|.+..+|+.|+++|+|.|.
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l 80 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL 80 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee
Confidence 34457899999999999999999999999999999999999999999999999999999999999999874
No 80
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.36 E-value=2e-11 Score=106.94 Aligned_cols=76 Identities=30% Similarity=0.514 Sum_probs=66.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
...+||+||.+.+....|++.|.-.|.|..|.+-.|+ .|.++|+|.|+|.++-.+-+|+..+++.-+..++..+++
T Consensus 215 ~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 215 HNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred cceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 4579999999999999999999999999999998888 679999999999999999999998887666556655544
No 81
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.3e-12 Score=107.68 Aligned_cols=70 Identities=20% Similarity=0.508 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
++-++|||.-|+++++|..|+..|+.||.|+.++++.|..||+++|||||+|.+.-+...|.+.-+|.++
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 5668999999999999999999999999999999999999999999999999999999999999888764
No 82
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=4.1e-12 Score=90.05 Aligned_cols=65 Identities=25% Similarity=0.366 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
-.+.|||+|||+++|.++..++|.+||.|..|+|-..+ ..+|.|||.|++..+|.+|++.|+|.-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n 81 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYN 81 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccc
Confidence 34679999999999999999999999999999997655 448999999999999999999999963
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=4.6e-12 Score=85.88 Aligned_cols=64 Identities=34% Similarity=0.601 Sum_probs=59.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 217 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+|+|+|||..+++++|+++|++||.|..+.+..++ +.++|+|||+|.+.++|.+|+..++|..+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~ 64 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKL 64 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEE
Confidence 48999999999999999999999999999988776 77899999999999999999999998654
No 84
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.4e-12 Score=116.81 Aligned_cols=166 Identities=28% Similarity=0.500 Sum_probs=134.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc-----------C-CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCC
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEA-----------G-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~-----------G-~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~ 177 (283)
...+.++|+++|+.++++.+-.+|..- | .+..+.+ ...+++||++|.+.++|..++. +++.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~------n~~~nfa~ie~~s~~~at~~~~-~~~~ 245 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL------NLEKNFAFIEFRSISEATEAMA-LDGI 245 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee------cccccceeEEecCCCchhhhhc-ccch
Confidence 456789999999999999999988763 2 2444444 3447899999999999999998 7999
Q ss_pred ccCCceeEEecccCCCCCCccCCCC------cccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecC
Q 023381 178 QIGGRTVKVNFPEVPRGGERAAMGP------KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER 251 (283)
Q Consensus 178 ~i~gr~l~v~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~ 251 (283)
.+.|+.+++................ .............+++||+|||..+++++++++...||.+...+++.+.
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 9999999998765433222221111 2222334455667899999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 252 YTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 252 ~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+|.++||||.+|.+......|+..|||+..
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~l 356 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL 356 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhhh
Confidence 9999999999999999999999999999753
No 85
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.34 E-value=3.5e-12 Score=106.73 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=58.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.++|||+|||+.+++++|+++|+.||.|.+|+|+.++. .+|||||+|.+.++|..|+. |||..+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l 67 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATI 67 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCee
Confidence 46899999999999999999999999999999988763 57999999999999999995 998765
No 86
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=1.5e-11 Score=107.94 Aligned_cols=69 Identities=22% Similarity=0.462 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
.-.+.|||+.||.++.|++|.-+|++.|.|-++|++.|+.+|.+||||||+|.+.++|+.||+.||+.-
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~E 149 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYE 149 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcc
Confidence 456899999999999999999999999999999999999999999999999999999999999999874
No 87
>smart00360 RRM RNA recognition motif.
Probab=99.32 E-value=6.9e-12 Score=84.69 Aligned_cols=63 Identities=38% Similarity=0.607 Sum_probs=58.9
Q ss_pred EcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 220 V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|+..|||..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 579999999999999999999999999999887899999999999999999999999997653
No 88
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=4.2e-12 Score=93.43 Aligned_cols=68 Identities=22% Similarity=0.409 Sum_probs=64.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
..++|||+||++.++|++|.++|+++|.|..|..-.|+.+-..-|||||+|-+.++|..|++-+||+.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr 102 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR 102 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCc
Confidence 56899999999999999999999999999999999999888999999999999999999999999974
No 89
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=1.3e-11 Score=84.32 Aligned_cols=61 Identities=31% Similarity=0.452 Sum_probs=55.5
Q ss_pred HHHHHHHHH----hcCCceEEE-EEecCCC--CCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 126 SSSLAEVFA----EAGTVASAE-IVYDRVT--DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 126 e~~l~~~F~----~~G~i~~i~-i~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
+++|+++|+ .||.|.++. ++.++.+ +.++|||||+|.+.++|.+|++.|||..+.||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999996 7777666 899999999999999999999999999999999976
No 90
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=9.9e-12 Score=102.44 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=59.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcccC
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVRL 283 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~~ 283 (283)
...+|||+||++.+|+++|+++|+.||.|.+|+|..+. ..+|+|||+|.++++|..|+ .|||..++
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~ 69 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIV 69 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeC
Confidence 45789999999999999999999999999999999874 55689999999999999999 59998653
No 91
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=6.2e-12 Score=97.56 Aligned_cols=64 Identities=34% Similarity=0.453 Sum_probs=59.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
-.++|||+||+..+++.+|...|..||.+..|.|-..+ -|||||+|+++.+|..|+..|||+.+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~ 72 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDI 72 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccc
Confidence 35799999999999999999999999999999998765 78999999999999999999999865
No 92
>PLN03213 repressor of silencing 3; Provisional
Probab=99.27 E-value=1e-11 Score=110.25 Aligned_cols=65 Identities=22% Similarity=0.413 Sum_probs=59.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCH--HHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA--EDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~--~~A~~Al~~lnG~~~ 282 (283)
..-+|||+||++.+++++|+.+|..||.|.++.|+ +.+| ||||||+|.+. .++.+||..|||..|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEW 75 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW 75 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCee
Confidence 34689999999999999999999999999999998 4567 99999999987 789999999999876
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.23 E-value=2.4e-10 Score=99.54 Aligned_cols=162 Identities=17% Similarity=0.230 Sum_probs=118.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCC--ceeEEecc
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNFP 189 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g--r~l~v~~a 189 (283)
--+++|+++-+.++-+-|..+|++||.|.+|.-... ...-.|.|+|.+...|..|-..|+|..|.. ..|+++++
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 346889999999999999999999999988866522 233458999999999999999999997743 45777776
Q ss_pred cCCC------------------CCC-----------------------ccCCCCc--ccCCCCCCCC---CCCeEEEcCC
Q 023381 190 EVPR------------------GGE-----------------------RAAMGPK--LQNSYQGFVD---SPHKIYAGNL 223 (283)
Q Consensus 190 ~~~~------------------~~~-----------------------~~~~~~~--~~~~~~~~~~---~~~~l~V~nL 223 (283)
+.-. ... ....... ......+... ....|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 4100 000 0000000 0000001111 1467778887
Q ss_pred C-CCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 224 G-WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 224 p-~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
. +.+|.+-|..+|+-||.|.+|.|+.++ +.-|+|+|.+...|+-|+..|+|.++
T Consensus 306 n~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l 360 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKL 360 (492)
T ss_pred chhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhccee
Confidence 5 578999999999999999999999876 35699999999999999999999875
No 94
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.23 E-value=3.3e-11 Score=78.48 Aligned_cols=56 Identities=39% Similarity=0.722 Sum_probs=50.6
Q ss_pred HHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 129 l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
|.++|++||.|..+.+..+. +++|||+|.+.++|..|++.|||..+.|+.|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997554 699999999999999999999999999999999875
No 95
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.22 E-value=3.2e-10 Score=100.98 Aligned_cols=163 Identities=23% Similarity=0.268 Sum_probs=117.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE-EEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS-AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~-i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
.....|-+++||+.||++||.+||+-.-.+.. |.++.+. .+++.|-|||+|++.+.|++|+.. |...|..|-|.|..
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 35678999999999999999999998766655 4444444 788999999999999999999995 88888888898876
Q ss_pred ccCCC---------------C---C---Ccc---------CCC-------------------------C-----------
Q 023381 189 PEVPR---------------G---G---ERA---------AMG-------------------------P----------- 202 (283)
Q Consensus 189 a~~~~---------------~---~---~~~---------~~~-------------------------~----------- 202 (283)
+.... . . .+. ... .
T Consensus 179 Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~ 258 (510)
T KOG4211|consen 179 SSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPN 258 (510)
T ss_pred hHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccc
Confidence 53000 0 0 000 000 0
Q ss_pred --cc--------cCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHH
Q 023381 203 --KL--------QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272 (283)
Q Consensus 203 --~~--------~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~ 272 (283)
.. .............+..++||+..++.+|..+|+..-.+ .+.|-..+ +|+..|-|.|+|.+.++|..
T Consensus 259 ~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~-dGr~TGEAdveF~t~edav~ 336 (510)
T KOG4211|consen 259 YPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGP-DGRATGEADVEFATGEDAVG 336 (510)
T ss_pred cCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCC-CCccCCcceeecccchhhHh
Confidence 00 00000011122578999999999999999999866444 55555444 79999999999999999999
Q ss_pred HHHH
Q 023381 273 ALDA 276 (283)
Q Consensus 273 Al~~ 276 (283)
|+.+
T Consensus 337 Amsk 340 (510)
T KOG4211|consen 337 AMGK 340 (510)
T ss_pred hhcc
Confidence 9854
No 96
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.21 E-value=6.6e-10 Score=95.76 Aligned_cols=167 Identities=18% Similarity=0.173 Sum_probs=130.1
Q ss_pred cCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 108 ASDEAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~-~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
-..+...+.|-+|... ++-+.|.++|-.||.|.+|.+++.+ .|-|.|++.+....++|+..|++..+.|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3446778999999876 7778899999999999999998776 689999999999999999999999999999999
Q ss_pred ecccCCCCCCcc--------------------CCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCc-eEE
Q 023381 187 NFPEVPRGGERA--------------------AMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL-LSA 245 (283)
Q Consensus 187 ~~a~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~~ 245 (283)
.+++........ ...............+.+.|...|.|..+||+.|..+|...+.. ..+
T Consensus 358 ~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~sv 437 (494)
T KOG1456|consen 358 CVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSV 437 (494)
T ss_pred eeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceE
Confidence 987743221111 11112222334456778999999999999999999999766533 445
Q ss_pred EEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 246 KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 246 ~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
+|+..+ + ....-|.++|++.++|..||..+|+..
T Consensus 438 kvFp~k-s-erSssGllEfe~~s~Aveal~~~NH~p 471 (494)
T KOG1456|consen 438 KVFPLK-S-ERSSSGLLEFENKSDAVEALMKLNHYP 471 (494)
T ss_pred Eeeccc-c-cccccceeeeehHHHHHHHHHHhcccc
Confidence 655444 2 223468999999999999999998764
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.20 E-value=9.1e-11 Score=79.85 Aligned_cols=65 Identities=35% Similarity=0.594 Sum_probs=59.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 217 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+|+|+|||..+++++|+++|+.+|.|..+.+..++.+ ..+|+|||+|.+.++|..|+..++|..+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~ 65 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKEL 65 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeE
Confidence 4899999999999999999999999999999887744 7799999999999999999999999753
No 98
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.20 E-value=5.1e-11 Score=102.18 Aligned_cols=68 Identities=32% Similarity=0.625 Sum_probs=65.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.++|||+|||+.+++++|.++|..||.|..+.+..++.+|.++|+|||+|.+.++|..|+..+||..+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~ 182 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL 182 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE
Confidence 58999999999999999999999999999999999988999999999999999999999999998765
No 99
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.20 E-value=6.3e-11 Score=94.48 Aligned_cols=84 Identities=20% Similarity=0.312 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhc-CCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~-G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
......++|+.+|.-..+.++..+|.++ |.+.++++-|++.||.++|||||+|++++.|.-|.+.||+..+.|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456689999999999999999999998 788999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 023381 188 FPEVP 192 (283)
Q Consensus 188 ~a~~~ 192 (283)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 85543
No 100
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=3.2e-11 Score=89.62 Aligned_cols=69 Identities=25% Similarity=0.416 Sum_probs=65.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..-.|||.++...+++++|.+.|..||.|+.+.+..|+.||-.||||+|+|.+.++|++|+..|||.-.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l 139 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL 139 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh
Confidence 345799999999999999999999999999999999999999999999999999999999999998643
No 101
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=5.1e-12 Score=101.29 Aligned_cols=138 Identities=24% Similarity=0.367 Sum_probs=116.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
....+||||+|+...++|+-|.++|-+.|+|..|.|..++ +++.+ ||||.|+++..+.-|++.+||..+.++.+.|.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3457899999999999999999999999999999887666 56666 999999999999999999999999999998863
Q ss_pred ccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcC----CCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEe
Q 023381 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGN----LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264 (283)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f 264 (283)
+-++ |...++++.+...|+.-|.+..+++..+. +|+.+.++|+.+
T Consensus 84 ------------------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~ 132 (267)
T KOG4454|consen 84 ------------------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTY 132 (267)
T ss_pred ------------------------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhh
Confidence 2333 56678899999999999999999998887 489999999998
Q ss_pred CCHHHHHHHHHHcCC
Q 023381 265 ETAEDLQSALDAMNG 279 (283)
Q Consensus 265 ~~~~~A~~Al~~lnG 279 (283)
-..-..-.|+....|
T Consensus 133 qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 133 QRLCAVPFALDLYQG 147 (267)
T ss_pred hhhhcCcHHhhhhcc
Confidence 766666666554433
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=99.17 E-value=9.2e-11 Score=80.03 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=48.4
Q ss_pred HHHHHHHhc----cCCCceEEE-EeecCCC--CCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 229 SQGLRDAFQ----GQPGLLSAK-VIFERYT--GRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 229 e~~L~~~F~----~~G~i~~~~-i~~~~~~--g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+++|+++|+ +||.|..+. +..++.+ |.++|+|||+|.+.++|.+|+..|||..+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~ 62 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF 62 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 578999998 999999995 7777666 89999999999999999999999999865
No 103
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.15 E-value=3.7e-11 Score=93.87 Aligned_cols=65 Identities=26% Similarity=0.460 Sum_probs=62.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ln 278 (283)
...+|||+||+..++++.|+++|-+.|.|+++.+.+|+.++..+|||||+|.+.++|+-|++.||
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln 72 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILN 72 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999998
No 104
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.14 E-value=9.1e-11 Score=105.98 Aligned_cols=67 Identities=28% Similarity=0.599 Sum_probs=65.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+.+||+|+|+++++++|..+|+..|.|..++++.|+.+|+.|||||++|.+.++|..|++.|||.-+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~ 85 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF 85 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999754
No 105
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.08 E-value=2.3e-10 Score=98.73 Aligned_cols=160 Identities=18% Similarity=0.228 Sum_probs=128.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
....+.|++++.+.+.+.+...++..+|......+........++|++++.|...+.+..|+.......+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35778999999999999999999999998888877776667899999999999999999999964445677777666655
Q ss_pred cCCCCCCccCCCCcccCCCCCCCCCCCeEE-EcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHH
Q 023381 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIY-AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (283)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~ 268 (283)
...... ..............+++ |+|++..+++++|+.+|..+|.|..+++..++.+|..+|+|+|.|.+..
T Consensus 166 ~~~~~~-------~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 166 TRRGLR-------PKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred cccccc-------ccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 432200 00011111122334455 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 023381 269 DLQSALDA 276 (283)
Q Consensus 269 ~A~~Al~~ 276 (283)
.+..|+..
T Consensus 239 ~~~~~~~~ 246 (285)
T KOG4210|consen 239 SKKLALND 246 (285)
T ss_pred hHHHHhhc
Confidence 99999874
No 106
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=8.2e-12 Score=117.35 Aligned_cols=136 Identities=21% Similarity=0.320 Sum_probs=118.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
...++||.||+..+.+.+|...|..+|.+..+++......++.+|+||++|..++++.+|+...++. +.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hhh---------
Confidence 3457999999999999999999999999988888766667899999999999999999999854433 333
Q ss_pred CCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHH
Q 023381 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (283)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A 270 (283)
...++|.|+|+..|.+.++.++..+|.+...+++..+ .|+.+|.|+|.|.+..+|
T Consensus 736 ------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~ 790 (881)
T KOG0128|consen 736 ------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADA 790 (881)
T ss_pred ------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchh
Confidence 1358999999999999999999999999999987776 799999999999999999
Q ss_pred HHHHHHcCCcc
Q 023381 271 QSALDAMNGVV 281 (283)
Q Consensus 271 ~~Al~~lnG~~ 281 (283)
.+++...++..
T Consensus 791 s~~~~s~d~~~ 801 (881)
T KOG0128|consen 791 SRKVASVDVAG 801 (881)
T ss_pred hhhcccchhhh
Confidence 99987776654
No 107
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.07 E-value=3.4e-09 Score=91.70 Aligned_cols=166 Identities=18% Similarity=0.186 Sum_probs=118.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
.++...+..++||+..++.+|..+|.-.......+.+-....|+..|.|.|.|.+.+.-+.|++. +...+.+|.|.|-.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeec
Confidence 34556678889999999999999998754444333333334678889999999999999999996 77888899999976
Q ss_pred ccCCCCCCccCCCCcccCCCCC--CCCCCCeEEEcCCCCCCCHHHHHHHhccC----CCceEEEEeecCCCCCCccEEEE
Q 023381 189 PEVPRGGERAAMGPKLQNSYQG--FVDSPHKIYAGNLGWGLTSQGLRDAFQGQ----PGLLSAKVIFERYTGRSRGFGFV 262 (283)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~~~i~~~~~~g~~kg~afV 262 (283)
+.....-.-... ....... .....-.|.+++||+++++.|+.++|... |..+.+-.++.+ +|+..|-|||
T Consensus 136 a~ge~f~~iagg---~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFv 211 (508)
T KOG1365|consen 136 ATGEEFLKIAGG---TSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFV 211 (508)
T ss_pred cCchhheEecCC---ccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEE
Confidence 653321111100 0001011 11223457889999999999999999633 455566655555 7999999999
Q ss_pred EeCCHHHHHHHHHHcCC
Q 023381 263 TFETAEDLQSALDAMNG 279 (283)
Q Consensus 263 ~f~~~~~A~~Al~~lnG 279 (283)
.|...++|+.||.+-.+
T Consensus 212 lfa~ee~aq~aL~khrq 228 (508)
T KOG1365|consen 212 LFACEEDAQFALRKHRQ 228 (508)
T ss_pred EecCHHHHHHHHHHHHH
Confidence 99999999999986543
No 108
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.07 E-value=3.5e-10 Score=90.28 Aligned_cols=71 Identities=21% Similarity=0.378 Sum_probs=64.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccC-CCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcccC
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVRL 283 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~~ 283 (283)
.....++|..+|..+.+.+|..+|.++ |.|..+++-+++.||.+||||||+|++.+.|.-|.+.||+.+|+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~ 118 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM 118 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh
Confidence 345679999999999999999999998 66667777799999999999999999999999999999999874
No 109
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.06 E-value=2.5e-10 Score=93.69 Aligned_cols=156 Identities=26% Similarity=0.406 Sum_probs=121.3
Q ss_pred eEEEcCCCCCCCHHH-H--HHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 114 RLYVGNLPYSMTSSS-L--AEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 114 ~l~v~nLp~~~te~~-l--~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
..+++++-.++..+- | ...|+.|-......++++. .+.-++++|+.|+......++-..-+++++..+.++.....
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 456666655555444 3 5677777777777777666 67778999999998888888877777888877775554332
Q ss_pred CCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHH
Q 023381 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (283)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A 270 (283)
.... ...........+||-+.|...++.+-|...|.+|-.....++++++.||+++||+||.|.+..++
T Consensus 177 swed-----------Psl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~ 245 (290)
T KOG0226|consen 177 SWED-----------PSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADY 245 (290)
T ss_pred ccCC-----------cccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHH
Confidence 2111 11222344567999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcc
Q 023381 271 QSALDAMNGVV 281 (283)
Q Consensus 271 ~~Al~~lnG~~ 281 (283)
..|++.|||+.
T Consensus 246 ~rAmrem~gky 256 (290)
T KOG0226|consen 246 VRAMREMNGKY 256 (290)
T ss_pred HHHHHhhcccc
Confidence 99999999974
No 110
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=3.6e-10 Score=93.37 Aligned_cols=86 Identities=30% Similarity=0.531 Sum_probs=80.3
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.+.|||-.||.+..+.+|..+|-.||.|.+.++.-|+.|+.+++|+||.|.+..+++.||..+||..|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC
Q 023381 187 NFPEVP 192 (283)
Q Consensus 187 ~~a~~~ 192 (283)
.+..++
T Consensus 360 QLKRPk 365 (371)
T KOG0146|consen 360 QLKRPK 365 (371)
T ss_pred hhcCcc
Confidence 876543
No 111
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.03 E-value=3.3e-10 Score=94.65 Aligned_cols=77 Identities=30% Similarity=0.512 Sum_probs=72.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
......+|+||||.+.++..+|+..|++||+|..|.|+ ++|+||.|...++|..|++.||+..+.|++++|.
T Consensus 74 Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 74 KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred cCCCccccccCCCCccccCHHHhhhhcccCCceeeeee--------cceeEEEEeeccchHHHHhcccccccccceeeee
Confidence 35678899999999999999999999999999999998 7799999999999999999999999999999999
Q ss_pred cccCC
Q 023381 188 FPEVP 192 (283)
Q Consensus 188 ~a~~~ 192 (283)
++...
T Consensus 146 ~stsr 150 (346)
T KOG0109|consen 146 LSTSR 150 (346)
T ss_pred eeccc
Confidence 97743
No 112
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.99 E-value=6.2e-09 Score=89.86 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=119.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHh--hCCCccCCceeE
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL--FDGSQIGGRTVK 185 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~--l~g~~i~gr~l~ 185 (283)
...++-.|.|++|-..++|.+|.+-++.||+|..+.++.. +..|.|+|++.+.|+.++.. -+...+.|+.-.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhh
Confidence 3446678999999999999999999999999999987644 46899999999999998862 256678898888
Q ss_pred EecccCCCCCCccCCCCcccCCCCCCCCCCCeE--EEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEE
Q 023381 186 VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI--YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263 (283)
Q Consensus 186 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~ 263 (283)
+.++..+.-..... ....+.+.| .|-|--+.+|.+-|..++...|.|.+|.|++. +|. .|+|+
T Consensus 101 ~NyStsq~i~R~g~----------es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVE 165 (494)
T KOG1456|consen 101 FNYSTSQCIERPGD----------ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVE 165 (494)
T ss_pred cccchhhhhccCCC----------CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEe
Confidence 88875433222111 001122233 45566788999999999999999999999875 444 69999
Q ss_pred eCCHHHHHHHHHHcCCcc
Q 023381 264 FETAEDLQSALDAMNGVV 281 (283)
Q Consensus 264 f~~~~~A~~Al~~lnG~~ 281 (283)
|++.+.|++|..+|||.-
T Consensus 166 Fdsv~~AqrAk~alNGAD 183 (494)
T KOG1456|consen 166 FDSVEVAQRAKAALNGAD 183 (494)
T ss_pred echhHHHHHHHhhccccc
Confidence 999999999999999963
No 113
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.6e-10 Score=90.86 Aligned_cols=68 Identities=32% Similarity=0.496 Sum_probs=64.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
..++|||++|-..+++.-|...|-+||.|++|.++.|-.++++||||||+|.-.++|.+|+..||+.-
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesE 76 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESE 76 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999753
No 114
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.95 E-value=5.6e-09 Score=97.61 Aligned_cols=81 Identities=25% Similarity=0.441 Sum_probs=73.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...-++|||||.|+..+++.+|.++|+.||.|.+|.++-. +|+|||.+.+..+|.+|+.+|....+.++.|+|.
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 3456789999999999999999999999999999998644 7999999999999999999999999999999999
Q ss_pred cccCCCC
Q 023381 188 FPEVPRG 194 (283)
Q Consensus 188 ~a~~~~~ 194 (283)
|+..+..
T Consensus 491 Wa~g~G~ 497 (894)
T KOG0132|consen 491 WAVGKGP 497 (894)
T ss_pred eeccCCc
Confidence 9875443
No 115
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.94 E-value=3.2e-09 Score=96.07 Aligned_cols=86 Identities=27% Similarity=0.463 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..-.+.|||.+|+..+...+|+++|++||.|....+|.+..+.-.++|+||++.+..+|.+||..||...|+||.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34467899999999999999999999999999999999988888899999999999999999999999999999999998
Q ss_pred ccCCCC
Q 023381 189 PEVPRG 194 (283)
Q Consensus 189 a~~~~~ 194 (283)
++....
T Consensus 482 aKNEp~ 487 (940)
T KOG4661|consen 482 AKNEPG 487 (940)
T ss_pred cccCcc
Confidence 875443
No 116
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.91 E-value=4.1e-09 Score=85.51 Aligned_cols=67 Identities=25% Similarity=0.362 Sum_probs=61.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcccC
Q 023381 214 SPHKIYAGNLGWGLTSQGLRD----AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVRL 283 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~----~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~~ 283 (283)
+..+|||.||+..+..++|++ +|++||+|.+|...+ +.+.+|.|||.|.+.+.|..|++.|+|..|+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFy 78 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFY 78 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCccc
Confidence 334999999999999999998 999999999998874 5688999999999999999999999999885
No 117
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.89 E-value=4.6e-09 Score=68.25 Aligned_cols=46 Identities=33% Similarity=0.517 Sum_probs=40.5
Q ss_pred HHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 232 L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
|+++|++||.|..+.+..+. +|+|||+|.+.++|..|++.|||..+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~ 46 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQF 46 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 68899999999999987543 68999999999999999999999875
No 118
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=3.2e-09 Score=83.30 Aligned_cols=64 Identities=23% Similarity=0.384 Sum_probs=56.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
..++|||+|||.++.+.+|.++|-+||.|..|.+...+ ..-.||||+|+++.+|..||..-||.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGY 68 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGY 68 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhccccc
Confidence 45899999999999999999999999999999875433 34679999999999999999887774
No 119
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.85 E-value=4.5e-09 Score=91.21 Aligned_cols=84 Identities=30% Similarity=0.491 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
....|||++||.++++.+++++|.+||.|..+.++.|..+.+++||+||.|.+++.+++++. ..-..|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 56789999999999999999999999999999999999999999999999999999999998 48889999999999987
Q ss_pred CCCCC
Q 023381 191 VPRGG 195 (283)
Q Consensus 191 ~~~~~ 195 (283)
++...
T Consensus 175 pk~~~ 179 (311)
T KOG4205|consen 175 PKEVM 179 (311)
T ss_pred chhhc
Confidence 65443
No 120
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.85 E-value=1.2e-08 Score=84.00 Aligned_cols=80 Identities=25% Similarity=0.534 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
....+||.|.|..+++++-|.+.|.+|-.....++++|+.||+++||+||.|.+..++..|++.++|+.++.|.|..+-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999988643
No 121
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=9.3e-09 Score=88.23 Aligned_cols=72 Identities=25% Similarity=0.316 Sum_probs=67.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 211 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++.+.|||--|..-++.+||.-+|+.||.|+.|.|++|..||.+--||||+|.+.+++.+|.-+|++.++
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI 306 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI 306 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee
Confidence 346778999999999999999999999999999999999999999999999999999999999999988764
No 122
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.77 E-value=3e-08 Score=89.36 Aligned_cols=82 Identities=27% Similarity=0.438 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
.....+|||+|||.+++..+|+++|..||.|+...|......++..+||||+|.+...++.|+.. +...++||++.|+-
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 34556699999999999999999999999999988865444455559999999999999999995 78899999999986
Q ss_pred ccC
Q 023381 189 PEV 191 (283)
Q Consensus 189 a~~ 191 (283)
...
T Consensus 364 k~~ 366 (419)
T KOG0116|consen 364 KRP 366 (419)
T ss_pred ccc
Confidence 544
No 123
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=3.7e-08 Score=84.45 Aligned_cols=76 Identities=24% Similarity=0.373 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhh-CCCccCCceeEEec
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF-DGSQIGGRTVKVNF 188 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~g~~i~gr~l~v~~ 188 (283)
..-.+|||++|-..+++.+|++.|-+||.|+.|.+... +++|||+|.+...|+.|..+. +...|+|++|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34578999999999999999999999999999999755 479999999999999988754 55578999999999
Q ss_pred ccC
Q 023381 189 PEV 191 (283)
Q Consensus 189 a~~ 191 (283)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 876
No 124
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.72 E-value=5.3e-08 Score=81.41 Aligned_cols=81 Identities=31% Similarity=0.612 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
-..+|+|.|||+.+++++|+++|..||.++.+-+-.+. .|.+.|.|-|.|...++|.+|++.++|..++|+.+.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34679999999999999999999999999888887777 89999999999999999999999999999999999998765
Q ss_pred CC
Q 023381 191 VP 192 (283)
Q Consensus 191 ~~ 192 (283)
.+
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 44
No 125
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=9.4e-09 Score=97.58 Aligned_cols=149 Identities=19% Similarity=0.282 Sum_probs=121.6
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
+....++||+|||+..+++.+|+..|..+|.|..|.|-+-. .+...-||||.|.+...+-.|...+.+..|..-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34567899999999999999999999999999999986554 45556799999999999999988888887765444444
Q ss_pred cccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCH
Q 023381 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (283)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~ 267 (283)
+-.. .......+++++|+..+....|...|..||.|..|.+-+ ..-||+|.|.+.
T Consensus 447 lG~~-------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~ 501 (975)
T KOG0112|consen 447 LGQP-------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESP 501 (975)
T ss_pred cccc-------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccC
Confidence 3211 122456899999999999999999999999999877642 245999999999
Q ss_pred HHHHHHHHHcCCccc
Q 023381 268 EDLQSALDAMNGVVR 282 (283)
Q Consensus 268 ~~A~~Al~~lnG~~~ 282 (283)
..|+.|...|-|..+
T Consensus 502 ~~aq~a~~~~rgap~ 516 (975)
T KOG0112|consen 502 PAAQAATHDMRGAPL 516 (975)
T ss_pred ccchhhHHHHhcCcC
Confidence 999999999988653
No 126
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.68 E-value=3e-07 Score=66.08 Aligned_cols=78 Identities=18% Similarity=0.332 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhc--CCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccC----CceeEE
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEA--GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG----GRTVKV 186 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~--G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~----gr~l~v 186 (283)
+||.|+|||...+.++|.+++... |...-+.+..|..++.+.|||||.|.+.+.+....+.++|..|. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998863 56677888899989999999999999999999999999999885 345666
Q ss_pred eccc
Q 023381 187 NFPE 190 (283)
Q Consensus 187 ~~a~ 190 (283)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6665
No 127
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.64 E-value=4.5e-08 Score=81.97 Aligned_cols=85 Identities=25% Similarity=0.488 Sum_probs=78.0
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.+.+||+|+.+.++.+++...|+.||.|..+.+..|+..|.++|||||+|.+.+.+..++. |+|..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 334567899999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred ecccCC
Q 023381 187 NFPEVP 192 (283)
Q Consensus 187 ~~a~~~ 192 (283)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 876543
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.60 E-value=3.8e-08 Score=85.51 Aligned_cols=165 Identities=14% Similarity=0.074 Sum_probs=116.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC---CCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT---DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
...|.|.||...++.++++.+|+..|.|..+.++.+... ......|||.|.+...+..|-. |.+.++-++.|.|..
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 348999999999999999999999999999998754322 3456789999999999888876 677777777766654
Q ss_pred ccCCCCCCc---------------cC-CC-----Ccc-c-C-C-CCCC--------------CCCCCeEEEcCCCCCCCH
Q 023381 189 PEVPRGGER---------------AA-MG-----PKL-Q-N-S-YQGF--------------VDSPHKIYAGNLGWGLTS 229 (283)
Q Consensus 189 a~~~~~~~~---------------~~-~~-----~~~-~-~-~-~~~~--------------~~~~~~l~V~nLp~~~te 229 (283)
......... .. .+ ... . + . .... ..-..+++|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 321110000 00 00 000 0 0 0 0000 001157899999999999
Q ss_pred HHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 230 ~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.++.+.|..+|+|.+..+- .|....+|.|+|....+...|++ ++|..|
T Consensus 166 ~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred hhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhh
Confidence 9999999999999887764 44556688899999999999997 566543
No 129
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=4.1e-08 Score=89.01 Aligned_cols=72 Identities=26% Similarity=0.444 Sum_probs=66.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeE
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~ 185 (283)
.-+.++|+|-|||..+++++|+++|+.||.|+.|+.-+ ..+|..||+|-+..+|++|++.|++..+.|++|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 44678999999999999999999999999999987744 4489999999999999999999999999999888
No 130
>PF12220 U1snRNP70_N: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; InterPro: IPR022023 This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with PF00076 from PFAM. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.
Probab=98.45 E-value=5.2e-08 Score=70.09 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=27.2
Q ss_pred ccCCCCCcccCCCCCCCCCCCccCCCCCC
Q 023381 25 TQIPTNHLPSLFKTKSPKPLKLEKAQNPS 53 (283)
Q Consensus 25 t~~~p~~l~~~f~~rp~~~~~~~~~~~~~ 53 (283)
|++|||||++||+||||++|++|+++.+.
T Consensus 2 t~~lPp~ll~LF~PRPPL~y~pP~d~~p~ 30 (94)
T PF12220_consen 2 TSKLPPNLLALFAPRPPLPYLPPIDYPPE 30 (94)
T ss_pred cCcCCHHHHHHcCCCCCCCCCCccccCcc
Confidence 78999999999999999999999998775
No 131
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.45 E-value=2.9e-07 Score=79.04 Aligned_cols=62 Identities=27% Similarity=0.388 Sum_probs=54.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
.-.+|||+||...+++.+|+++|.+||+|..++++.. +|+|||+|.+.++|+.|...+-+.+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~l 288 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKL 288 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhccee
Confidence 3468999999999999999999999999999999854 5699999999999999998764433
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.44 E-value=4.8e-07 Score=75.72 Aligned_cols=64 Identities=30% Similarity=0.495 Sum_probs=60.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCC
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG 279 (283)
..+|.|.|||+.++++||+++|..||.+..+-+..++ .|.+.|.|-|.|...++|.+|++.+||
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~g 146 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNG 146 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcC
Confidence 4689999999999999999999999999999998887 899999999999999999999999999
No 133
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.41 E-value=4.3e-07 Score=85.35 Aligned_cols=61 Identities=23% Similarity=0.412 Sum_probs=55.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
..++|||++|+..+++.||..+|+.||.|.+|.++ .++|||||.+.+..+|.+|+.+|++.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~n~ 480 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLSNV 480 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHhcc
Confidence 34799999999999999999999999999999876 34799999999999999999999854
No 134
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.40 E-value=6.1e-07 Score=83.52 Aligned_cols=79 Identities=29% Similarity=0.484 Sum_probs=70.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV---TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
.+.|||+||+..+++..|...|+.||+|..++|..-+. ..+.+.+|||.|-+..++++|++.|+|..+.++.+++.|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 34599999999999999999999999999999875542 246688999999999999999999999999999999999
Q ss_pred cc
Q 023381 189 PE 190 (283)
Q Consensus 189 a~ 190 (283)
.+
T Consensus 254 gk 255 (877)
T KOG0151|consen 254 GK 255 (877)
T ss_pred cc
Confidence 75
No 135
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.39 E-value=4.9e-07 Score=75.75 Aligned_cols=68 Identities=21% Similarity=0.438 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....+||+|+.+.++.+++..+|+.||.|..+.+..+...|.+||||||+|.+.+.+..|+. |||..+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i 167 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI 167 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc
Confidence 45689999999999999999999999999999999999999999999999999999999999 998754
No 136
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.36 E-value=2.3e-06 Score=61.50 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=60.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcc--CCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQG--QPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~--~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+|-|+|+|...+.++|.+++.. .|....+.++.|..++.+.|||||-|.+++.|.+-.+.+||..+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w 70 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKW 70 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcc
Confidence 47999999999999999999864 37777889999998999999999999999999999999999764
No 137
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.33 E-value=1.9e-06 Score=69.91 Aligned_cols=69 Identities=16% Similarity=0.273 Sum_probs=57.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEee-cCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIF-ERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~-~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||.+||.++..-+|..+|..|.+-+.+.+.. ++.....+-+||+.|.+..+|.+|..+|||..|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrF 102 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRF 102 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeee
Confidence 458999999999999999999999997777766533 232233468999999999999999999999887
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=7.7e-07 Score=80.94 Aligned_cols=65 Identities=23% Similarity=0.232 Sum_probs=57.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|+|.|||..+++++|.++|+.||+|..++- +-..+|..||+|-|..+|++|+++||+.-+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~ 137 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREI 137 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHh
Confidence 35679999999999999999999999999999664 445589999999999999999999998643
No 139
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.29 E-value=1.5e-07 Score=82.66 Aligned_cols=140 Identities=23% Similarity=0.302 Sum_probs=109.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCC-ccCCceeEEeccc
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS-QIGGRTVKVNFPE 190 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G-~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~-~i~gr~l~v~~a~ 190 (283)
..+|++||...++.++|..+|...- +...-.++ -.||+||...+...+.+|++.++|+ .+.|.++.|....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 3689999999999999999998642 11111222 2599999999999999999999988 6889999998765
Q ss_pred CCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEE-eecCCCCCCccEEEEEeCCHHH
Q 023381 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKV-IFERYTGRSRGFGFVTFETAED 269 (283)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i-~~~~~~g~~kg~afV~f~~~~~ 269 (283)
+++- ..+++-|+|+|....++-|..+...||.+..|.. ..++.+ -..=|+|.+.+.
T Consensus 75 ~kkq-------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~ 131 (584)
T KOG2193|consen 75 PKKQ-------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQ 131 (584)
T ss_pred hHHH-------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHH
Confidence 3322 1245889999999999999999999999998855 333332 233478999999
Q ss_pred HHHHHHHcCCccc
Q 023381 270 LQSALDAMNGVVR 282 (283)
Q Consensus 270 A~~Al~~lnG~~~ 282 (283)
++.|+..|||..+
T Consensus 132 ~~~ai~kl~g~Q~ 144 (584)
T KOG2193|consen 132 HRQAIHKLNGPQL 144 (584)
T ss_pred HHHHHHhhcchHh
Confidence 9999999999654
No 140
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.22 E-value=3.3e-06 Score=78.60 Aligned_cols=162 Identities=14% Similarity=0.051 Sum_probs=113.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
+...+-+.++++...+.++++||... .|....+..+...+...|-++|.|....++++|++. +....-.|.+.+.-+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCC
Confidence 34456667999999999999998643 344455555554555589999999999999999985 6666667777775433
Q ss_pred CCCC--------CCc-----cCCCC---------cccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceE-EEE
Q 023381 191 VPRG--------GER-----AAMGP---------KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS-AKV 247 (283)
Q Consensus 191 ~~~~--------~~~-----~~~~~---------~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-~~i 247 (283)
.... ... ...++ ...............|||..||..+++.++.+.|...-.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 1100 000 00000 000111122345679999999999999999999998888888 555
Q ss_pred eecCCCCCCccEEEEEeCCHHHHHHHHH
Q 023381 248 IFERYTGRSRGFGFVTFETAEDLQSALD 275 (283)
Q Consensus 248 ~~~~~~g~~kg~afV~f~~~~~A~~Al~ 275 (283)
-..+ +++.++.|||.|..++++..|+.
T Consensus 468 t~~P-~~~~~~~afv~F~~~~a~~~a~~ 494 (944)
T KOG4307|consen 468 TRLP-TDLLRPAAFVAFIHPTAPLTASS 494 (944)
T ss_pred ccCC-cccccchhhheeccccccchhhh
Confidence 5544 78889999999999888888774
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.18 E-value=2.2e-06 Score=77.48 Aligned_cols=62 Identities=27% Similarity=0.389 Sum_probs=54.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ 276 (283)
...|||+|||.+++..+|+++|..||.|+..+|......++...||||+|.+.+++..||.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A 349 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA 349 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc
Confidence 34599999999999999999999999999998877654455559999999999999999975
No 142
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.18 E-value=2.6e-06 Score=70.45 Aligned_cols=74 Identities=23% Similarity=0.362 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC--------CCcee----EEEEEECCHHHHHHHHHhhCCCc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT--------DRSRG----FGFVTMGSVEEAKEAIRLFDGSQ 178 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~--------~~~~g----~afv~f~~~~~a~~a~~~l~g~~ 178 (283)
....||+++||+.++..-|+++|+.||.|-+|.+-....+ |.+++ -|+|+|.+...|+.+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5678999999999999999999999999999999766544 33333 36899999999999999999999
Q ss_pred cCCcee
Q 023381 179 IGGRTV 184 (283)
Q Consensus 179 i~gr~l 184 (283)
|+|++-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 999753
No 143
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.16 E-value=6.2e-06 Score=75.25 Aligned_cols=65 Identities=18% Similarity=0.363 Sum_probs=60.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ln 278 (283)
..+.|+|.+|...+.-.||+.+|++||.|+-.+|+.+..+...+-||||++.+..+|.+||..||
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLH 468 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLH 468 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhh
Confidence 45789999999999999999999999999999999988777788899999999999999998765
No 144
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.15 E-value=1.4e-06 Score=71.42 Aligned_cols=60 Identities=27% Similarity=0.522 Sum_probs=55.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcccC
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVRL 283 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~~ 283 (283)
.++||++||+.+.+.+|..+|..||.+.++.+. .||+||+|.+..+|..|+..|||+.++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~ 61 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELC 61 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceec
Confidence 369999999999999999999999999998865 578999999999999999999998763
No 145
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.14 E-value=1.3e-07 Score=89.68 Aligned_cols=163 Identities=15% Similarity=0.152 Sum_probs=122.9
Q ss_pred CCCeEEEcCCCCCCCHH-HHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 111 EAARLYVGNLPYSMTSS-SLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~-~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
..+...+.++.+..... ..++.|..+|.|+.|++...........++++++....+++.|.. ..|..+.++...|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 34456677887776665 567889999999999886522222233388899999999988887 4888889999988877
Q ss_pred cCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHH
Q 023381 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269 (283)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~ 269 (283)
........... .+.......++||.||+..+.+.+|...|..+|.+..+++......++.+|+|+++|..+++
T Consensus 649 d~~~~~~~~kv-------s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~ 721 (881)
T KOG0128|consen 649 DAEEKEENFKV-------SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEH 721 (881)
T ss_pred CchhhhhccCc-------CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCc
Confidence 64442111110 01111233679999999999999999999999999988887677789999999999999999
Q ss_pred HHHHHHHcCCcc
Q 023381 270 LQSALDAMNGVV 281 (283)
Q Consensus 270 A~~Al~~lnG~~ 281 (283)
|.+|+....++.
T Consensus 722 ~~aaV~f~d~~~ 733 (881)
T KOG0128|consen 722 AGAAVAFRDSCF 733 (881)
T ss_pred hhhhhhhhhhhh
Confidence 999998766654
No 146
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.13 E-value=9e-06 Score=70.04 Aligned_cols=66 Identities=12% Similarity=0.241 Sum_probs=59.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLS--------AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..|||.|||.++|.+++.++|++||.|.. |++.++. .|..||-|.|.|-..++...|++.|++..+
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 45999999999999999999999998865 7777776 599999999999999999999999998754
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.13 E-value=3.8e-06 Score=78.37 Aligned_cols=70 Identities=29% Similarity=0.461 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCC---CCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY---TGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~---~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+....|||+||+..++++.|...|+.||.|..++|+..+. ..+.+.||||-|.+..+|++|++.|+|.++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 3457899999999999999999999999999999987653 245688999999999999999999999875
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.06 E-value=1.8e-06 Score=69.79 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=59.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
..++|||.|+...++++-|.++|-+.|.|..+.|..+. ++..| ||||.|.+..+..-|+..|||.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~ 72 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGD 72 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccc
Confidence 34789999999999999999999999999999998776 56777 9999999999999999999985
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.03 E-value=3.2e-05 Score=53.25 Aligned_cols=68 Identities=28% Similarity=0.444 Sum_probs=47.2
Q ss_pred CeEEEcCCCCCCCHHHHHH----HHHhcC-CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 113 ARLYVGNLPYSMTSSSLAE----VFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~----~F~~~G-~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
..|+|.|||.+.+...|+. ++..+| .|..| + .+.|+|-|.+.+.|..|.+.|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3689999999999877654 555565 56555 1 4789999999999999999999999999999999
Q ss_pred ccc
Q 023381 188 FPE 190 (283)
Q Consensus 188 ~a~ 190 (283)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 875
No 150
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.02 E-value=1.8e-05 Score=67.97 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=62.0
Q ss_pred CCCeEEEcCCCCCCCHHH----H--HHHHHhcCCceEEEEEecCCCC-Ccee--EEEEEECCHHHHHHHHHhhCCCccCC
Q 023381 111 EAARLYVGNLPYSMTSSS----L--AEVFAEAGTVASAEIVYDRVTD-RSRG--FGFVTMGSVEEAKEAIRLFDGSQIGG 181 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~----l--~~~F~~~G~i~~i~i~~~~~~~-~~~g--~afv~f~~~~~a~~a~~~l~g~~i~g 181 (283)
...-+||-+||..+-.++ | .++|++||.|..|.+-+..... ...+ -.||+|.+.++|..|+...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 445689999998876665 2 4799999999998775433111 1122 23999999999999999999999999
Q ss_pred ceeEEeccc
Q 023381 182 RTVKVNFPE 190 (283)
Q Consensus 182 r~l~v~~a~ 190 (283)
|-|+..|-.
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999998754
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.92 E-value=1.9e-05 Score=57.98 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=37.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~l 277 (283)
+.|+|.+++..++.++|++.|+.||.|..|.+.... ..|+|.|.+.+.|+.|+..+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHH
Confidence 468899999999999999999999999999876433 36999999999999999875
No 152
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.77 E-value=7.8e-05 Score=69.77 Aligned_cols=77 Identities=23% Similarity=0.309 Sum_probs=68.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
.+.|-+.|+|++++-+||-+||..|-.+-.-.+++....|...|-|.|.|++.++|..|...+++..|..|.+.+++
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34789999999999999999999998776555555556899999999999999999999999999999999998864
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.74 E-value=3.9e-05 Score=66.66 Aligned_cols=84 Identities=26% Similarity=0.404 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCce--------EEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccC
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA--------SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~--------~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~ 180 (283)
.....+|||-+||..+++.+|..+|.++|.|. .|.+.+++.|++++|-|.|.|.+...|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34456899999999999999999999999874 3778899999999999999999999999999999999999
Q ss_pred CceeEEecccCC
Q 023381 181 GRTVKVNFPEVP 192 (283)
Q Consensus 181 gr~l~v~~a~~~ 192 (283)
|..|.|..+...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999887643
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.73 E-value=4e-05 Score=66.56 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=63.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS--------AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....+|||-+||..+++++|.++|.++|.|.. |.|.++++|+..||-|.|.|.+...|+.|+..++|+-|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 34568999999999999999999999998864 77888999999999999999999999999999998765
No 155
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00017 Score=66.14 Aligned_cols=78 Identities=23% Similarity=0.378 Sum_probs=63.3
Q ss_pred CCCCeEEEcCCCCCCC--H----HHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccC-Cc
Q 023381 110 DEAARLYVGNLPYSMT--S----SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG-GR 182 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~t--e----~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~-gr 182 (283)
.-...|+|.|+|.--. - .-|.++|+++|++.++.+..+.. |..+||.|++|.+.++|+.|++.+||..|+ .|
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 5566899999996422 2 23567999999999999987774 459999999999999999999999999886 56
Q ss_pred eeEEec
Q 023381 183 TVKVNF 188 (283)
Q Consensus 183 ~l~v~~ 188 (283)
...|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 777754
No 156
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.69 E-value=0.00012 Score=60.92 Aligned_cols=88 Identities=25% Similarity=0.302 Sum_probs=77.3
Q ss_pred HHHHHHHhhCCCccCCceeEEecccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEE
Q 023381 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSA 245 (283)
Q Consensus 166 ~a~~a~~~l~g~~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~ 245 (283)
-|..|-..|++....|+.++|.++.. ..|+|.||...+..+.+.+-|+.||.|...
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~a 61 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH------------------------AELYVVNLMQGASNDLLEQAFRRFGPIERA 61 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc------------------------ceEEEEecchhhhhHHHHHhhhhcCccchh
Confidence 35566677899999999999999751 469999999999999999999999999988
Q ss_pred EEeecCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 023381 246 KVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (283)
Q Consensus 246 ~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ln 278 (283)
.+..|. .++..+-++|+|...-.|.+|+..++
T Consensus 62 v~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 62 VAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred eeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 877775 68889999999999999999998773
No 157
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.59 E-value=6.3e-05 Score=65.20 Aligned_cols=82 Identities=27% Similarity=0.493 Sum_probs=73.9
Q ss_pred CCCCeEE-EcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 110 DEAARLY-VGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 110 ~~~~~l~-v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
....++| |+++++.+++++|+..|..+|.|..+++..+..++..+|||||.|........++.. ....+.|+.+.+..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3445666 999999999999999999999999999999999999999999999999999999987 88899999999988
Q ss_pred ccCC
Q 023381 189 PEVP 192 (283)
Q Consensus 189 a~~~ 192 (283)
....
T Consensus 261 ~~~~ 264 (285)
T KOG4210|consen 261 DEPR 264 (285)
T ss_pred CCCC
Confidence 6644
No 158
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.53 E-value=9e-05 Score=64.02 Aligned_cols=77 Identities=22% Similarity=0.393 Sum_probs=68.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcC--CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G--~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
...+|||||-|.+|+++|.+-+...| .+..+++..++..|.++|||+|...+....++.++.|-.+.|+|+.-.|.-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 44699999999999999999888877 577788888998999999999999999999999999999999998766643
No 159
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00017 Score=66.09 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=55.4
Q ss_pred CeEEEcCCCCCCC------HHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGLT------SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~t------e~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..|+|.|.|.--. ..-|..+|+++|.|+...++.+..+| .+||.|++|.+..+|..|++.|||+.+
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~l 130 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRL 130 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhccccee
Confidence 5788888885321 23477889999999999999888655 899999999999999999999999864
No 160
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.40 E-value=0.00044 Score=47.75 Aligned_cols=57 Identities=25% Similarity=0.265 Sum_probs=38.3
Q ss_pred CeEEEcCCCCCCCHHH----HHHHhccCCC-ceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGLTSQG----LRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~----L~~~F~~~G~-i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..|+|.|||...+... |++++..+|+ |..+ . .|.|+|.|.+.+.|.+|.+.|+|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdV 64 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDV 64 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhccccc
Confidence 3589999999888665 5566667764 3333 1 36799999999999999999998654
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.35 E-value=0.0002 Score=63.62 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=56.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeec---CCCCC----------CccEEEEEeCCHHHHHHHHHHcC
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE---RYTGR----------SRGFGFVTFETAEDLQSALDAMN 278 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~---~~~g~----------~kg~afV~f~~~~~A~~Al~~ln 278 (283)
+.++|.+.|||.+-.-+.|.++|+.+|.|+.|+|.+. +.+++ .+-+|+|+|...+.|.+|.+.||
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 5689999999999999999999999999999999876 33322 25689999999999999999875
No 162
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.34 E-value=0.00049 Score=50.53 Aligned_cols=70 Identities=21% Similarity=0.329 Sum_probs=42.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhC-----CCccCCceeEEe
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD-----GSQIGGRTVKVN 187 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~-----g~~i~gr~l~v~ 187 (283)
..|.|.+++..++.++|+..|+.||.|..|.+.+. -.-|||-|.+.+.|+.|+..+. +..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 35788889999999999999999999999988643 3478999999999999998653 335555555554
Q ss_pred c
Q 023381 188 F 188 (283)
Q Consensus 188 ~ 188 (283)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 163
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00079 Score=61.27 Aligned_cols=67 Identities=27% Similarity=0.324 Sum_probs=61.5
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHH-hcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHh
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~-~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 173 (283)
...++.+|||||+||.-++.++|..+|+ -||.|..+-|=.|..-+.++|-|=|+|.+-..-.+||.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4457899999999999999999999999 599999999988877789999999999999999999984
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.27 E-value=0.00067 Score=43.19 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=41.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHH
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al 274 (283)
+.|-|.|.+.... +.+..+|..||+|+.+.+. ....+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 3577888886654 5566699999999998875 23558999999999999985
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.26 E-value=0.00018 Score=59.72 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=57.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCC--------CCC----ccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT--------GRS----RGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~--------g~~----kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..||++++|..+...-|+++|..||.|-+|.+.....+ |.+ -.-|+|+|.+...|.++...|||..+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 57999999999999999999999999999998766544 222 23589999999999999999999754
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.01 E-value=0.0019 Score=46.79 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=45.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecC-------CCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER-------YTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~-------~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..-|.|.+.|.. ....|.+.|++||.|.+..-.... ......++..|+|.++.+|.+||+ -||.++
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~ 78 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIF 78 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEE
Confidence 356888888877 677899999999999887511110 012346799999999999999997 777764
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.95 E-value=0.0028 Score=40.30 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=41.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHH
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~ 171 (283)
+.|-|.+.+.+..+ .+...|..||.|..+.+- ....+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 46778888877664 455688899999998874 33578999999999999985
No 168
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.87 E-value=0.00061 Score=56.76 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=52.7
Q ss_pred HHHHHHHH-hcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 127 SSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 127 ~~l~~~F~-~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
+++..+|+ +||.|+.+.+..+. ...-+|-+||.|..+++|.+|+..||+..+.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45556666 89999999776544 34558899999999999999999999999999999998864
No 169
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.79 E-value=0.00098 Score=57.80 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=53.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCC--CceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQP--GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G--~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~l 277 (283)
..+||+||-|.+|++||.+.+...| .+.+++++.++.+|.+||||+|...+.....+.++.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiL 144 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEIL 144 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhc
Confidence 4689999999999999999998766 5667788888889999999999999988877777654
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.73 E-value=0.0032 Score=53.47 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=45.0
Q ss_pred HHHHHHHhccCCCceEEEEeecCCCCCC-ccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 229 SQGLRDAFQGQPGLLSAKVIFERYTGRS-RGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 229 e~~L~~~F~~~G~i~~~~i~~~~~~g~~-kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
++++++.+++||.|..|.|+..+..... ---.||+|...++|.+|+-.|||..|
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF 354 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF 354 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee
Confidence 5678899999999999999887643322 23489999999999999999999876
No 171
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.72 E-value=0.0022 Score=62.09 Aligned_cols=77 Identities=22% Similarity=0.348 Sum_probs=67.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCC--ceeEE
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKV 186 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g--r~l~v 186 (283)
....+.+|+++|...+....|...|..||.|..|.+- .| .-||||.|++...++.|++.+-|..|+| +++.|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hg--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HG--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cC--CcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 3456789999999999999999999999999998773 22 4699999999999999999999999986 77999
Q ss_pred ecccC
Q 023381 187 NFPEV 191 (283)
Q Consensus 187 ~~a~~ 191 (283)
+++..
T Consensus 526 dla~~ 530 (975)
T KOG0112|consen 526 DLASP 530 (975)
T ss_pred ccccC
Confidence 99874
No 172
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.61 E-value=0.0042 Score=53.76 Aligned_cols=67 Identities=12% Similarity=0.186 Sum_probs=50.7
Q ss_pred CCeEEEcCCCCCCCHHH------HHHHhccCCCceEEEEeecCCC-CCCccE--EEEEeCCHHHHHHHHHHcCCcc
Q 023381 215 PHKIYAGNLGWGLTSQG------LRDAFQGQPGLLSAKVIFERYT-GRSRGF--GFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~------L~~~F~~~G~i~~~~i~~~~~~-g~~kg~--afV~f~~~~~A~~Al~~lnG~~ 281 (283)
.+-+||-+++..+..++ =.++|++||.|..|.|-+.... +...+. .+|+|.+.++|.+||...+|.+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 35689999998877665 3578999999999887655321 222232 3999999999999999998875
No 173
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.59 E-value=0.0017 Score=60.07 Aligned_cols=66 Identities=12% Similarity=0.200 Sum_probs=54.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccC-CCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 211 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+...+.|+|.||-..+|.-+|+.+++.- |.|+.. +| |+ -|..|||.|.+.++|...+.+|||..|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-Dk----IKShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DK----IKSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-HH----hhcceeEecccHHHHHHHHHHHhcccc
Confidence 44567899999999999999999999955 455555 32 32 366799999999999999999999876
No 174
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.55 E-value=0.014 Score=38.18 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=44.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccC---CCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHc
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQ---PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~---G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~l 277 (283)
+..|+|+|+. .++.+||+.+|..| .....+..+-|. -|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999996 58999999999988 235567766654 3889999999999999875
No 175
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.53 E-value=0.0095 Score=43.17 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=50.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEE-EEecC------CCCCceeEEEEEECCHHHHHHHHHhhCCCccCCcee
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAE-IVYDR------VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~-i~~~~------~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l 184 (283)
..-|.|=+.|.. ....+.+.|++||.|.+.. +.++. .......+..|.|.++.+|.+|+.+ ||..+.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 445777788887 4467888999999987664 11110 0112356889999999999999995 9999998755
Q ss_pred E-Eecc
Q 023381 185 K-VNFP 189 (283)
Q Consensus 185 ~-v~~a 189 (283)
. |.++
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 4 5544
No 176
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.52 E-value=0.0026 Score=56.72 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=60.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEec---CCC--CC--------ceeEEEEEECCHHHHHHHHHhhCCC
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD---RVT--DR--------SRGFGFVTMGSVEEAKEAIRLFDGS 177 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~---~~~--~~--------~~g~afv~f~~~~~a~~a~~~l~g~ 177 (283)
+.++|.+.|||.+-.-+.|.++|+.+|.|+.|+|..- ..+ +. .+-+|+|+|...+.|.+|.+.++..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6789999999999888999999999999999999755 212 22 2557999999999999999977555
Q ss_pred ccCCceeEEec
Q 023381 178 QIGGRTVKVNF 188 (283)
Q Consensus 178 ~i~gr~l~v~~ 188 (283)
.-+-..++|..
T Consensus 310 ~~wr~glkvkL 320 (484)
T KOG1855|consen 310 QNWRMGLKVKL 320 (484)
T ss_pred hhhhhcchhhh
Confidence 44433444433
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.37 E-value=0.011 Score=45.63 Aligned_cols=74 Identities=27% Similarity=0.326 Sum_probs=52.0
Q ss_pred cCCCCCeEEEcCCCC------CCCH---HHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCc
Q 023381 108 ASDEAARLYVGNLPY------SMTS---SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~------~~te---~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~ 178 (283)
.+.+..||.|.=+.. ...+ .+|.+.|..||.+.=++++. +.-+|+|.+.+.|-+|+. ++|..
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCSE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCcE
Confidence 345667777765551 1222 35678889999988777762 457999999999999998 79999
Q ss_pred cCCceeEEeccc
Q 023381 179 IGGRTVKVNFPE 190 (283)
Q Consensus 179 i~gr~l~v~~a~ 190 (283)
+.|+.|.|....
T Consensus 94 v~g~~l~i~LKt 105 (146)
T PF08952_consen 94 VNGRTLKIRLKT 105 (146)
T ss_dssp ETTEEEEEEE--
T ss_pred ECCEEEEEEeCC
Confidence 999999998754
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.28 E-value=0.013 Score=49.84 Aligned_cols=63 Identities=25% Similarity=0.237 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCceEEEEEecCCCCC-ceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 127 SSLAEVFAEAGTVASAEIVYDRVTDR-SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 127 ~~l~~~F~~~G~i~~i~i~~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.+++...++||.|.+|.|.....-.. -.--.||+|...++|.+|+-.|||..|+||.+...+-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 45567889999999998876642211 1234699999999999999999999999999887654
No 179
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.25 E-value=0.0049 Score=54.37 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=56.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCC---CCCccEEEEEeCCHHHHHHHHHHcCCcccC
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT---GRSRGFGFVTFETAEDLQSALDAMNGVVRL 283 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~---g~~kg~afV~f~~~~~A~~Al~~lnG~~~~ 283 (283)
...|-|.||...++.++++.+|.-.|.|.+++++....+ ......|||.|.|...+..|-. |-+++|+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfv 77 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFV 77 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceee
Confidence 347999999999999999999999999999999764322 3456789999999999988875 7777764
No 180
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.12 E-value=0.0077 Score=48.56 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=46.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcc-CCCc---eEEEEeec--CCCCCCccEEEEEeCCHHHHHHHHHHcCCcccC
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQG-QPGL---LSAKVIFE--RYTGRSRGFGFVTFETAEDLQSALDAMNGVVRL 283 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~-~G~i---~~~~i~~~--~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~~ 283 (283)
..+|.|++||..+|++++.+.+.. ++.- ..+.-... ......-..|+|.|.+.+++..-...++|..|+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 468999999999999999998876 5555 23321111 111122456999999999999999999998874
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.02 E-value=0.0075 Score=55.97 Aligned_cols=75 Identities=23% Similarity=0.325 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHh-cCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCcc---CCceeE
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI---GGRTVK 185 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~-~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i---~gr~l~ 185 (283)
.....|+|.||=.-.|..+|+.++++ .|.|...+| .+-+..|||.|.+.++|.+....|||..| +++.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm------DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM------DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH------HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 45678999999999999999999995 556666643 23367899999999999999999999988 578899
Q ss_pred Eeccc
Q 023381 186 VNFPE 190 (283)
Q Consensus 186 v~~a~ 190 (283)
++|..
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 98864
No 182
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.02 E-value=0.023 Score=47.59 Aligned_cols=75 Identities=29% Similarity=0.371 Sum_probs=61.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhC--CC--ccCCceeEEec
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GS--QIGGRTVKVNF 188 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~--~i~gr~l~v~~ 188 (283)
..|+|.||+.-+..+.+..-|+.||+|....++-|. .++..+-++|.|...-.+.+|+..+. |. ...++..-|.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 679999999999999999999999999887776665 68889999999999999999998763 22 34456666654
No 183
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.74 E-value=0.14 Score=37.75 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=51.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCC
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G-~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g 181 (283)
....+.+...|+.++-..|..+.+.+- .|..++|++|. ..++-.+.+.|.+..+|+..++.+||+.+..
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344555656666677667765555543 57788888875 3367789999999999999999999998753
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.56 E-value=0.14 Score=37.85 Aligned_cols=65 Identities=12% Similarity=-0.008 Sum_probs=49.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccC-CCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~-G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.+...|+.++-++|..+...+ ..|..++|+++.. .++=.+.++|.+.+.|..-...+||+.|
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 445566667777777777666655 4566788887653 3566799999999999999999999876
No 185
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.04 E-value=0.011 Score=51.49 Aligned_cols=78 Identities=24% Similarity=0.318 Sum_probs=60.2
Q ss_pred CCeEEEcCCCCCCCHHH-HH--HHHHhcCCceEEEEEecCC----CCCceeEEEEEECCHHHHHHHHHhhCCCccCCcee
Q 023381 112 AARLYVGNLPYSMTSSS-LA--EVFAEAGTVASAEIVYDRV----TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~-l~--~~F~~~G~i~~i~i~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l 184 (283)
..-+||-+|+.....+. |+ ..|++||.|..|.+.++.. .+- ..-+||+|...++|..||...+|...+|+.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~-~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGG-TCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCC-CCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34578888988755444 43 5899999999998877652 122 2237999999999999999999999999997
Q ss_pred EEeccc
Q 023381 185 KVNFPE 190 (283)
Q Consensus 185 ~v~~a~ 190 (283)
+..+..
T Consensus 156 ka~~gt 161 (327)
T KOG2068|consen 156 KASLGT 161 (327)
T ss_pred HHhhCC
Confidence 776654
No 186
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.84 E-value=0.026 Score=50.44 Aligned_cols=59 Identities=27% Similarity=0.444 Sum_probs=47.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccC--CCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQ--PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~--G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+++|++||....+..||..+|... |.-..+- ...||+||.+.+...|.+|++.++|++-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl--------~k~gyafvd~pdq~wa~kaie~~sgk~e 62 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL--------VKSGYAFVDCPDQQWANKAIETLSGKVE 62 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee--------eecceeeccCCchhhhhhhHHhhchhhh
Confidence 469999999999999999999754 2222221 1368999999999999999999999864
No 187
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.81 E-value=0.1 Score=36.11 Aligned_cols=53 Identities=8% Similarity=0.117 Sum_probs=38.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 023381 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (283)
Q Consensus 217 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ln 278 (283)
..+|. .|..+...||.++|+.||.|--.- +.| .-|||...+.+.|..|+..++
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsW-i~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSW-IND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEE-ECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEE-EcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 44554 999999999999999999885443 333 259999999999999988765
No 188
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.71 E-value=0.012 Score=49.30 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=41.3
Q ss_pred HHHHHHhc-cCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 230 QGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 230 ~~L~~~F~-~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+++...|+ +||+|+.+.|-.+.. -.-+|-++|.|...++|++|+..|||.+|
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~ 135 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWY 135 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccc
Confidence 34555555 899999997765542 23478899999999999999999999875
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.38 E-value=0.031 Score=45.02 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=48.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHh-cCCc---eEEEEEecCCC--CCceeEEEEEECCHHHHHHHHHhhCCCccCC---
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAE-AGTV---ASAEIVYDRVT--DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--- 181 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~-~G~i---~~i~i~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g--- 181 (283)
....|.|++||+..|++++...+.. ++.- ..+.-...... .....-|||.|.+.+++......++|..+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999988876665 5544 33331122211 1234568999999999999999999987643
Q ss_pred --ceeEEecccC
Q 023381 182 --RTVKVNFPEV 191 (283)
Q Consensus 182 --r~l~v~~a~~ 191 (283)
....|.+|-.
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 2345555544
No 190
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.38 E-value=0.4 Score=31.38 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=42.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhc---CCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhh
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEA---GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~---G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 174 (283)
..|+|+++.. ++.++|+.+|..| ....+|..+-|. -|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4789999865 6778999999999 134567777553 4789999999999999753
No 191
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.20 E-value=0.43 Score=43.31 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=58.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCC
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G-~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g 181 (283)
...|.|-.+|-.++-.||-.|...+- .|..++++||. --++-...|.|.+..+|...++.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 77899999999999999999998754 68999999964 3345678999999999999999999998864
No 192
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.69 E-value=0.55 Score=36.05 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=55.1
Q ss_pred CCCCCeEEEcCCCCCCCH-HH---HHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCcee
Q 023381 109 SDEAARLYVGNLPYSMTS-SS---LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te-~~---l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l 184 (283)
..+-.||.|+=|...+.. ++ +...++.||+|.+|.+. | +.-|.|.|++..+|-.|+.+++ ....|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~-s~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQ-SRAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhc-CCCCCceE
Confidence 456678989877666532 33 44567789999999874 4 4569999999999999999754 47778888
Q ss_pred EEecc
Q 023381 185 KVNFP 189 (283)
Q Consensus 185 ~v~~a 189 (283)
.+.|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 87764
No 193
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.50 E-value=0.15 Score=47.25 Aligned_cols=75 Identities=13% Similarity=0.255 Sum_probs=55.8
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHh--cCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhC--CCccCCc
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAE--AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGR 182 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~--~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~i~gr 182 (283)
......+.|.++.||..+-.++++.+|.. +-++.+|.+-.+. + =||+|++..||+.|++.|. -+.|.|+
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n-WyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N-WYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c-eEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 33445567889999999999999999985 6788888875443 2 3899999999999998653 2345566
Q ss_pred eeEEec
Q 023381 183 TVKVNF 188 (283)
Q Consensus 183 ~l~v~~ 188 (283)
.|..++
T Consensus 243 pImARI 248 (684)
T KOG2591|consen 243 PIMARI 248 (684)
T ss_pred chhhhh
Confidence 555443
No 194
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.45 E-value=0.41 Score=31.82 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 124 MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 124 ~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
++-++++..+..|+-.. |..|+ .|| ||.|.+..+|++++...+|..+.+..+.+
T Consensus 12 ~~v~d~K~~Lr~y~~~~---I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 12 VTVEDFKKRLRKYRWDR---IRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred ccHHHHHHHHhcCCcce---EEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 66789999999996432 33333 344 89999999999999999999888777654
No 195
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.21 E-value=0.43 Score=33.11 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=40.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhC
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 175 (283)
.+..+|+ .|......||.++|+.||.|.-- .+-| .-|||...+.+.+..++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~Vs-Wi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVS-WIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEE-EECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEE-EEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 3456665 99999999999999999998643 4333 359999999999999998764
No 196
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.14 E-value=0.3 Score=37.72 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=42.3
Q ss_pred CCCCCeEEEcCCCC------CCCH---HHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGW------GLTS---QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~------~~te---~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.++..+|.|.-+.. ...+ .+|.+.|..||.+.=+|+..+ .-+|+|.+-.+|.+|+. |+|..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 45566777765551 2222 367788899999998888743 48999999999999997 777643
No 197
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=0.97 Score=42.41 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=61.3
Q ss_pred ccCCCCCeEEEcCCCCC-CCHHHHHHHHHhc----CCceEEEEEecC----------CCCC-------------------
Q 023381 107 AASDEAARLYVGNLPYS-MTSSSLAEVFAEA----GTVASAEIVYDR----------VTDR------------------- 152 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~-~te~~l~~~F~~~----G~i~~i~i~~~~----------~~~~------------------- 152 (283)
......++|-|.||.|+ +...+|.-+|+.| |.|.+|.|.... .+|.
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34667889999999998 7888999999876 477777665321 1121
Q ss_pred ------------------ceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 153 ------------------SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 153 ------------------~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..=||.|+|.+...|.+.++.++|..+......+++
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 123788999999999999999999999765544443
No 198
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.51 E-value=0.32 Score=44.13 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=56.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccC-CCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...|+|-.+|-.++-.||..+...+ -.|..++|++|... .+=.++|+|.+..+|..-...+||+-|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcC
Confidence 5689999999999999999999765 57889999996543 345699999999999999999999876
No 199
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.50 E-value=0.72 Score=43.03 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=63.0
Q ss_pred CHHHHHHHHHhhCCCccCCceeEEecccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcc--CC
Q 023381 163 SVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQG--QP 240 (283)
Q Consensus 163 ~~~~a~~a~~~l~g~~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~--~G 240 (283)
+.+-...+++..-+..++.+-.+|+-. ...|.+.++-+|..+-.++++.+|+. +.
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~-----------------------~kRcIvilREIpettp~e~Vk~lf~~encP 202 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPN-----------------------HKRCIVILREIPETTPIEVVKALFKGENCP 202 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccC-----------------------cceeEEEEeecCCCChHHHHHHHhccCCCC
Confidence 345555666666666666666655521 24477899999999999999999964 67
Q ss_pred CceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHc
Q 023381 241 GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (283)
Q Consensus 241 ~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~l 277 (283)
.+.+|.+-.+. -=||+|.+..+|+.|.+.|
T Consensus 203 k~iscefa~N~-------nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 203 KVISCEFAHND-------NWYITFESDTDAQQAYKYL 232 (684)
T ss_pred CceeeeeeecC-------ceEEEeecchhHHHHHHHH
Confidence 77788765543 2599999999999998766
No 200
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.61 E-value=0.5 Score=38.33 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhC--CCccCCceeEEeccc
Q 023381 125 TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGRTVKVNFPE 190 (283)
Q Consensus 125 te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~i~gr~l~v~~a~ 190 (283)
....|+++|..|+.+......+. -+-..|.|.+.+.|..|...++ +..+.|..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 34789999999999888877644 3568999999999999999999 999999999998874
No 201
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.56 E-value=0.36 Score=37.00 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=44.6
Q ss_pred CCCCeEEEcCCCCCC----CHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCC
Q 023381 213 DSPHKIYAGNLGWGL----TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~----te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG 279 (283)
++..+|.|+=|..++ +-..+...++.||.|..+... | +--|.|.|.+..+|.+|+.+++.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC
Confidence 355688887665554 333455567899999999864 3 33599999999999999998753
No 202
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.29 E-value=0.17 Score=48.00 Aligned_cols=123 Identities=21% Similarity=0.194 Sum_probs=84.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+..++||+|+.+.+..+-++.+...+|-|..+..+. |||..|........|+..++...++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34667999999999999999999999999988775532 999999999999999998898899999888876
Q ss_pred ccCCCCCCccCC-CCcccCCCCCCCCC--CCeEEEcCCCCCCCHHHHHHHhccCCCc
Q 023381 189 PEVPRGGERAAM-GPKLQNSYQGFVDS--PHKIYAGNLGWGLTSQGLRDAFQGQPGL 242 (283)
Q Consensus 189 a~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~l~V~nLp~~~te~~L~~~F~~~G~i 242 (283)
.... ...... ............++ .+..+|.|++....+......+.--+..
T Consensus 108 d~q~--~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~ 162 (668)
T KOG2253|consen 108 DEQT--IENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSA 162 (668)
T ss_pred hhhh--hcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchh
Confidence 3211 000000 00001111111112 4567888888888777777666544433
No 203
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.28 E-value=0.2 Score=35.34 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=48.2
Q ss_pred EEEEECCHHHHHHHHHhh-CCCccCCceeEEecccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHH
Q 023381 157 GFVTMGSVEEAKEAIRLF-DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDA 235 (283)
Q Consensus 157 afv~f~~~~~a~~a~~~l-~g~~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~ 235 (283)
|.|+|.++.-|++.++.- +...+++..+.|........... .-.-....+.++|.|.|+|..+.+++|++.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~--------k~qv~~~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQ--------KFQVFSGVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCce--------EEEEEEcccCCEEEEeCCCCCCChhhheee
Confidence 689999999999999842 33356677777765331111000 000111235688999999999999999987
Q ss_pred hc
Q 023381 236 FQ 237 (283)
Q Consensus 236 F~ 237 (283)
++
T Consensus 73 Le 74 (88)
T PF07292_consen 73 LE 74 (88)
T ss_pred EE
Confidence 65
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.28 E-value=0.12 Score=47.02 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=58.3
Q ss_pred CCeEEEcCCCCCC-CHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 112 AARLYVGNLPYSM-TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 112 ~~~l~v~nLp~~~-te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
.+.+-+.-.|+.. +..+|...|.+||.|..|.+-.. ---|.|+|.+..+|-.|+. .++..|++|-|+|.|-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 3445555566664 45689999999999999988433 3568999999999988887 69999999999999976
Q ss_pred C
Q 023381 191 V 191 (283)
Q Consensus 191 ~ 191 (283)
+
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 5
No 205
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.56 E-value=0.42 Score=41.18 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=44.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.=|.|.+.|.. .-.-|..+|.+||.|+...- +..-.+-.|.|.+..+|++||. -||+++
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALs-kng~ii 256 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALS-KNGTII 256 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhh-hcCeee
Confidence 44677777764 44578889999999987653 2334589999999999999996 566654
No 206
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.08 E-value=0.94 Score=30.10 Aligned_cols=49 Identities=16% Similarity=0.353 Sum_probs=38.1
Q ss_pred CCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcccC
Q 023381 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVRL 283 (283)
Q Consensus 226 ~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~~ 283 (283)
.++-++++..+..|+-. +|..|+ +| =||.|.+..+|.++....||..++
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-CE-----EEEEECChHHHHHHHHhcCCCEEE
Confidence 46778999999999632 333343 33 489999999999999999998764
No 207
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.13 E-value=0.39 Score=41.99 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=49.0
Q ss_pred CeEEEcCCCCCCCHHHHH---HHhccCCCceEEEEeecCC----CCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 216 HKIYAGNLGWGLTSQGLR---DAFQGQPGLLSAKVIFERY----TGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~---~~F~~~G~i~~~~i~~~~~----~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
+-+||-+|+..+..+.+. +.|.+||.|..+.+..++. .|..- -++|+|...++|..||...+|.+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~ 149 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFV 149 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHH
Confidence 457788888776555443 4688999999999887662 22222 28999999999999999988875
No 208
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=88.56 E-value=14 Score=31.99 Aligned_cols=165 Identities=10% Similarity=0.087 Sum_probs=96.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCC-------CCCceeEEEEEECCHHHHHHHHH----hhC--CCc
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV-------TDRSRGFGFVTMGSVEEAKEAIR----LFD--GSQ 178 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~-------~~~~~g~afv~f~~~~~a~~a~~----~l~--g~~ 178 (283)
.|.|...|+..+++--.+-..|-+||+|++|.++.+.. ..+...-..+.|-+.+.+-..+. ++. ...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 45688899998898888889999999999999987661 12344567888888887765553 222 224
Q ss_pred cCCceeEEecccCCCCCCc--cCCCCcc-------cCCCCCCCCCCCeEEEcCCCCCCCHHH-HHHHh---ccCC----C
Q 023381 179 IGGRTVKVNFPEVPRGGER--AAMGPKL-------QNSYQGFVDSPHKIYAGNLGWGLTSQG-LRDAF---QGQP----G 241 (283)
Q Consensus 179 i~gr~l~v~~a~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~l~V~nLp~~~te~~-L~~~F---~~~G----~ 241 (283)
+.-..|.+.+......... ....... -...-......+.|.|.- ...+.+++ +.+.+ ..-+ .
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCCCceEE
Confidence 5566677666542211111 0000000 000111223456777763 34453443 33332 2222 3
Q ss_pred ceEEEEeecCC--CCCCccEEEEEeCCHHHHHHHHHHc
Q 023381 242 LLSAKVIFERY--TGRSRGFGFVTFETAEDLQSALDAM 277 (283)
Q Consensus 242 i~~~~i~~~~~--~g~~kg~afV~f~~~~~A~~Al~~l 277 (283)
++.+.++.... ..-++.||.++|-+..-|...+.-|
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYl 211 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYL 211 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHH
Confidence 45566654332 2346889999999998888777654
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.49 E-value=1.6 Score=37.77 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=50.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCce-eEEeccc
Q 023381 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT-VKVNFPE 190 (283)
Q Consensus 115 l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~-l~v~~a~ 190 (283)
|-|-+.|.... .-|.++|.+||.|..... +....+-+|-|.+.-+|++|+.. +|..|+|.. |-|..+.
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 44456665433 457789999999876543 34457899999999999999995 999998864 4455443
No 210
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.17 E-value=4 Score=27.62 Aligned_cols=58 Identities=21% Similarity=0.453 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHhcCC-----ceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 123 SMTSSSLAEVFAEAGT-----VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 123 ~~te~~l~~~F~~~G~-----i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.++..+|..++...+. |-.|.+. ..|+||+-.. +.+..++..+++..+.|+++.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3778888888887754 4456554 3578998774 4788899999999999999999864
No 211
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=81.35 E-value=10 Score=34.33 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=54.1
Q ss_pred ccCCCCCeEEEcCCCCC-CCHHHHHHHHHhc----CCceEEEEEecCC--------------------------------
Q 023381 107 AASDEAARLYVGNLPYS-MTSSSLAEVFAEA----GTVASAEIVYDRV-------------------------------- 149 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~-~te~~l~~~F~~~----G~i~~i~i~~~~~-------------------------------- 149 (283)
....+..+|-|-||.|+ +...+|...|+.| |++..|.|.....
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~ 220 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGD 220 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCC
Confidence 44678889999999998 7778888888875 4666665432110
Q ss_pred --------CC------Cc-------------------eeEEEEEECCHHHHHHHHHhhCCCccCCc
Q 023381 150 --------TD------RS-------------------RGFGFVTMGSVEEAKEAIRLFDGSQIGGR 182 (283)
Q Consensus 150 --------~~------~~-------------------~g~afv~f~~~~~a~~a~~~l~g~~i~gr 182 (283)
.| .. .-||.|++.+...++..+..++|..+...
T Consensus 221 dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s 286 (622)
T COG5638 221 DNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS 286 (622)
T ss_pred ccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc
Confidence 01 01 22788999999999999999999887643
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=79.73 E-value=2.4 Score=40.47 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=50.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ln 278 (283)
++..++||+|+.+.+..+-++.+...+|.|..+.... |||..|.....+..|+..++
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t 94 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLT 94 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhc
Confidence 4557899999999999999999999999998776542 89999999999999998764
No 213
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=79.19 E-value=1.5 Score=43.05 Aligned_cols=70 Identities=33% Similarity=0.435 Sum_probs=57.6
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCcc--CCceeEEeccc
Q 023381 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI--GGRTVKVNFPE 190 (283)
Q Consensus 115 l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i--~gr~l~v~~a~ 190 (283)
..+.|.+-..+..-|..++.+||.|..++..|+. ..|.|+|...+.|-.|+..++|+.+ -|-+.+|.+++
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3344445566777889999999999999998775 7899999999999999999999965 47778888776
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=78.33 E-value=1.2 Score=43.68 Aligned_cols=60 Identities=27% Similarity=0.237 Sum_probs=50.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
.+..+.|.+-..+-..|..+|..||.|.+.+-+++- ..|.|+|...+.|..|+.+|+|+-
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gke 358 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKE 358 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCc
Confidence 345566666778888999999999999999877664 369999999999999999999974
No 215
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=73.23 E-value=24 Score=30.50 Aligned_cols=58 Identities=17% Similarity=0.334 Sum_probs=40.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCH-------HHHHHHHHHcC
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA-------EDLQSALDAMN 278 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~-------~~A~~Al~~ln 278 (283)
..|+++||+.++.-.||+..+.+-|.+ ..+|... .+.|-||+.|.+. ++..+++..+|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 569999999999999999999877644 3333221 2367799999663 44455555444
No 216
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=71.75 E-value=6.7 Score=26.18 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=45.7
Q ss_pred HHHHHHHHhcC-CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 127 SSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 127 ~~l~~~F~~~G-~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
++|.+.|...| ++..++-++...++.+...-+|+.....+... .++=+.+.|+++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888899988 78888888888777788888998876644333 244557788998888654
No 217
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=70.19 E-value=37 Score=29.39 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=40.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCc-eEEEEEecCCCCCceeEEEEEECCH-------HHHHHHHHhh
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSV-------EEAKEAIRLF 174 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i-~~i~i~~~~~~~~~~g~afv~f~~~-------~~a~~a~~~l 174 (283)
..-|+++|||.++.-.+|+..+.+-|-+ .++.+ ..+.|-||+.|.+. .++.+++..+
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCccCCCCCchHHHHHhccC
Confidence 3459999999999999999999987643 33333 12468899999753 4455555443
No 218
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=67.19 E-value=9.2 Score=28.48 Aligned_cols=56 Identities=23% Similarity=0.378 Sum_probs=30.8
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECC-HHHHHHHHH
Q 023381 114 RLYVGNLPYS---------MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS-VEEAKEAIR 172 (283)
Q Consensus 114 ~l~v~nLp~~---------~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~-~~~a~~a~~ 172 (283)
++.|.|++.. .+.++|++.|..|.+++ ++...+. ..++|++.|.|.. -..-..|++
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 4556666543 34578999999999885 5566665 3568999999965 444555554
No 219
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=59.26 E-value=23 Score=23.57 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=45.0
Q ss_pred HHHHHHHHhcC-CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 127 SSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 127 ~~l~~~F~~~G-~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
++|.+.|...| +|..++-+....++.+...-||+.+...+...++ +=..+.|..+.|+.+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCC
Confidence 46778888888 7788877777767788888899988766644443 3456788888888654
No 220
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.89 E-value=39 Score=32.21 Aligned_cols=71 Identities=15% Similarity=0.295 Sum_probs=54.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccC----CCceEEEEeecC----------CCCC---------------------
Q 023381 212 VDSPHKIYAGNLGWG-LTSQGLRDAFQGQ----PGLLSAKVIFER----------YTGR--------------------- 255 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~~~i~~~~----------~~g~--------------------- 255 (283)
....++|-|-||.|. +.-.||..+|..| |.|.+|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345689999999995 6788999988766 688888885422 0111
Q ss_pred ----------------CccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 256 ----------------SRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 256 ----------------~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.--||.|+|.+.+.|...-..++|.-|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~Ef 293 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEF 293 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCccee
Confidence 123899999999999999999999754
No 221
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=57.49 E-value=11 Score=29.04 Aligned_cols=118 Identities=11% Similarity=0.003 Sum_probs=75.1
Q ss_pred eEEEcCCC--CCCCHHHHHHHHHh-cCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 114 RLYVGNLP--YSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 114 ~l~v~nLp--~~~te~~l~~~F~~-~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
...||.+. ...+-..|...+.. ++....+.+..- ..++..+.|.+++++..+++. ....++|..+.+..-.
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWS 90 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhc
Confidence 34455552 33566777776665 444444444322 258999999999999999983 6667788777776543
Q ss_pred CCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHhccCCCceEEEEe
Q 023381 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG-LTSQGLRDAFQGQPGLLSAKVI 248 (283)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~~~i~ 248 (283)
+....... ......-=|.|.|||.. .+++-|+.+.+.+|.+..+...
T Consensus 91 ~~~~~~~~-----------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 91 PDFNPSEV-----------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred cccccccc-----------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 21110000 00011234678899976 6788899999999999888653
No 222
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=57.09 E-value=14 Score=33.15 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=49.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCC-ceEEEEeecCC--CCCCccEEEEEeCCHHHHHHHHHHcCCcccC
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERY--TGRSRGFGFVTFETAEDLQSALDAMNGVVRL 283 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~~~i~~~~~--~g~~kg~afV~f~~~~~A~~Al~~lnG~~~~ 283 (283)
...+.|.+||..+++.++.+-...+-. +.......... ...-.+.|+|.|.+.++...-.+.++|.+||
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 357899999999999999888776532 22222221110 1123678999999999988888899999986
No 223
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=56.46 E-value=23 Score=26.18 Aligned_cols=114 Identities=23% Similarity=0.362 Sum_probs=62.1
Q ss_pred CCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCC--ccCCceeEEecccCCCCCCc
Q 023381 120 LPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS--QIGGRTVKVNFPEVPRGGER 197 (283)
Q Consensus 120 Lp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~--~i~gr~l~v~~a~~~~~~~~ 197 (283)
||.-++ .|.++|+.-|+|.+|..+..-.+ ..|+-.++|. .++|. |++.-...+.. ..
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtqypd-----------------ndal~~~~G~lE~vDg~-i~IGs~q~~~s-V~ 69 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQYPD-----------------NDALLYVHGTLEQVDGN-IRIGSGQTPAS-VR 69 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEeccCC-----------------chhhheeeeehhhccCc-EEEccCCCccc-EE
Confidence 676664 58899999999999877633211 1122223444 23444 44432111000 00
Q ss_pred cCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcc---CCCceEEEEeecCCCCCCccEEEEEeCCH
Q 023381 198 AAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQG---QPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (283)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~---~G~i~~~~i~~~~~~g~~kg~afV~f~~~ 267 (283)
..+-....+.+| -|+.+|..+++++|+. |.+|.+-.+.+|-....+-..||.-|...
T Consensus 70 ----------i~gTPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 70 ----------IQGTPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ----------EecCCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 000011122333 5899999999999964 55666555555533333445788888654
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.89 E-value=35 Score=30.96 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=45.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCce-EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ 276 (283)
-...|-|.+.|.....+||...|..||.-- +|.++.|. .||-.|.+...|..||-.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 346889999999999999999999996543 45555443 699999999999999964
No 225
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=49.12 E-value=3 Score=39.12 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=54.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccC
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~ 180 (283)
...++|++|+++.++-++|..+...+--+.++.+-......+...+++|.|+.--.+..|+.+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4567999999999999999999998877766655444333455677899999888888888888877664
No 226
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=47.81 E-value=32 Score=30.29 Aligned_cols=55 Identities=25% Similarity=0.289 Sum_probs=37.6
Q ss_pred EEEEECCHHHHHHHHHhhCCCccCCceeEEecccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHh
Q 023381 157 GFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAF 236 (283)
Q Consensus 157 afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F 236 (283)
|||+|++..+|+.|.+.+.... ++.+.+..|. ++..|.-.||.....+..++.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP-----------------------eP~DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP-----------------------EPDDIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC-----------------------CcccccccccCCChHHHHHHHHH
Confidence 7999999999999999544332 3444555432 34557788887776666666554
No 227
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.53 E-value=73 Score=29.01 Aligned_cols=57 Identities=23% Similarity=0.264 Sum_probs=45.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHh
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~-i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 173 (283)
+-.+.|-|-+.|.....++|...|..|+. --.|.++-| -.||..|.+...|..|+..
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 44678999999999888999999999974 344555533 3689999999999999984
No 228
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=41.96 E-value=3.7 Score=38.47 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=51.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
..+.||++|++...+-.+|..++..+..+..+.+-.+....+...+++|+|.---...-|+-+|||.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~i 296 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGI 296 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhc
Confidence 4578999999999999999999999987777766444333455678999998766666666666664
No 229
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=40.67 E-value=11 Score=34.87 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=33.1
Q ss_pred CHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHH
Q 023381 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274 (283)
Q Consensus 228 te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al 274 (283)
+-.+|..+|.+||.|..|.+-... -.|.|+|.+.-+|-.|-
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~ 426 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY 426 (526)
T ss_pred hHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchh
Confidence 567899999999999999875432 25899999999986665
No 230
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.69 E-value=8.5 Score=35.17 Aligned_cols=76 Identities=4% Similarity=-0.133 Sum_probs=57.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 114 ~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
+-|+..+|...+++++.-+|..||.|..+..-+....|...-.+|+.-.. .++..++..+.-..+.|..++|.++.
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 45677899999999999999999999988776666566667778887653 45566666555566777777777654
No 231
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=36.85 E-value=62 Score=22.37 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=21.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 255 RSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 255 ~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
..+||-||+=.+..+...|++.+-+.
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CCceEEEEEeCCHHHHHHHHhcccce
Confidence 36999999999999999999877653
No 232
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=36.24 E-value=35 Score=30.71 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=45.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEEecCCC--CCceeEEEEEECCHHHHHHHHHhhCCCcc
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVT--DRSRGFGFVTMGSVEEAKEAIRLFDGSQI 179 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~-i~~i~i~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~g~~i 179 (283)
-..|.|.+||...++.++..-...+-. +....+...... ..-.+.|||.|...+++......++|..+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 346889999999999988876666532 222333221111 11267789999999998888887787754
No 233
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=35.89 E-value=38 Score=29.15 Aligned_cols=71 Identities=15% Similarity=0.407 Sum_probs=44.8
Q ss_pred CCCCCeEEEcCCCCC------------CCHHHHHHHHHhcCCceEEEEEe-----cCCCCCc-----eeEE---------
Q 023381 109 SDEAARLYVGNLPYS------------MTSSSLAEVFAEAGTVASAEIVY-----DRVTDRS-----RGFG--------- 157 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~------------~te~~l~~~F~~~G~i~~i~i~~-----~~~~~~~-----~g~a--------- 157 (283)
..-..||++.+||-. -++.-|+..|..||.|..|.|.. ...+|+. .||+
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 344568999999853 35677999999999999887742 2234443 3333
Q ss_pred EEEECCHHHHHHHHHhhCCCcc
Q 023381 158 FVTMGSVEEAKEAIRLFDGSQI 179 (283)
Q Consensus 158 fv~f~~~~~a~~a~~~l~g~~i 179 (283)
||+|..-.....|+..|.|..+
T Consensus 226 yvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchH
Confidence 3444444445566666666654
No 234
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=34.30 E-value=65 Score=21.06 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=16.0
Q ss_pred HHHHHHhccCCCceEEEEe
Q 023381 230 QGLRDAFQGQPGLLSAKVI 248 (283)
Q Consensus 230 ~~L~~~F~~~G~i~~~~i~ 248 (283)
.+|+++|+..|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5899999999999877653
No 235
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=33.37 E-value=65 Score=28.05 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=44.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCC-------CCCCccEEEEEeCCHHHHH
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY-------TGRSRGFGFVTFETAEDLQ 271 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~-------~g~~kg~afV~f~~~~~A~ 271 (283)
.+.|.+.|+...++--.+...|-+||.|+.|.++.+.. .-+..-...+.|-+.+.+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 35688999999999999999999999999999987651 1123346788888776543
No 236
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=33.12 E-value=79 Score=21.83 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=21.4
Q ss_pred CceeEEEEEECCHHHHHHHHHhhCCC
Q 023381 152 RSRGFGFVTMGSVEEAKEAIRLFDGS 177 (283)
Q Consensus 152 ~~~g~afv~f~~~~~a~~a~~~l~g~ 177 (283)
.-+||-||+=.++.++..|++.+.+.
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CCceEEEEEeCCHHHHHHHHhcccce
Confidence 36899999999999999999866543
No 237
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=32.05 E-value=26 Score=31.74 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=46.2
Q ss_pred CeEEEcCCCCCCCH--------HHHHHHhcc--CCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHH
Q 023381 216 HKIYAGNLGWGLTS--------QGLRDAFQG--QPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275 (283)
Q Consensus 216 ~~l~V~nLp~~~te--------~~L~~~F~~--~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~ 275 (283)
+.+|+.+.+..... +++...|.. ++.+..++.-++.....++|-.|++|.....|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45677766665544 499999998 6777777766665567789999999999999998763
No 238
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=31.84 E-value=1.4e+02 Score=20.44 Aligned_cols=57 Identities=7% Similarity=0.052 Sum_probs=39.8
Q ss_pred EEEcCCCCCCCHHHHHHHhccC-C-CceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHc
Q 023381 218 IYAGNLGWGLTSQGLRDAFQGQ-P-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (283)
Q Consensus 218 l~V~nLp~~~te~~L~~~F~~~-G-~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~l 277 (283)
-|+..++..++..+|+..++.. | .|..++.+.-+ ...--|||++..-+.|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHhh
Confidence 4555588999999999998874 3 44556555444 22346999998888887765544
No 239
>PRK11901 hypothetical protein; Reviewed
Probab=31.19 E-value=1.6e+02 Score=26.17 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=41.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEE--EEECCHHHHHHHHHhhC
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF--VTMGSVEEAKEAIRLFD 175 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~af--v~f~~~~~a~~a~~~l~ 175 (283)
...+|-|..+ .+++.|..|..+++ +..+++++....|+. +|.. =.|.+.++|+.|+..|-
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCC
Confidence 3456665554 55788888888876 455677665555554 5553 35899999999999764
No 240
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=30.87 E-value=19 Score=32.54 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=51.1
Q ss_pred CCCCeEEEcCCCCCCCHH--------HHHHHHHh--cCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHH
Q 023381 110 DEAARLYVGNLPYSMTSS--------SLAEVFAE--AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~--------~l~~~F~~--~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~ 172 (283)
...+.+|+.+........ ++...|.. .+++..++..++.....++|-.|++|+..+.+++...
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345667777777665444 88888988 6788889998888788899999999999999998884
No 241
>PRK11901 hypothetical protein; Reviewed
Probab=27.79 E-value=1.4e+02 Score=26.50 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=38.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEE--EeCCHHHHHHHHHHcC
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFV--TFETAEDLQSALDAMN 278 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV--~f~~~~~A~~Al~~ln 278 (283)
..+|-+.. ...++.|..|..+++ +..++++.-...|+.. |..| .|.+.++|..|+..|-
T Consensus 245 ~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 245 HYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred CeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCC
Confidence 34454443 456888888888775 4556666554455543 3333 5799999999998873
No 242
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=26.02 E-value=82 Score=25.41 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=42.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHH-hcCCceEEEEEecCCC-CCceeEEEEEECCHHHHHHHHHhhCCCccCCceeE
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFA-EAGTVASAEIVYDRVT-DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~-~~G~i~~i~i~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~ 185 (283)
.+++|.. .++++|..+.. .-|.+.++.+.+.... ...+|-.||+|.+.+++.+.++. +......+.+.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~ 180 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELK 180 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHH
Confidence 3455554 55555554433 1278888877554321 25688899999999999988874 44444444443
No 243
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=25.26 E-value=48 Score=19.07 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=9.7
Q ss_pred CCCHHHHHHHhccCC
Q 023381 226 GLTSQGLRDAFQGQP 240 (283)
Q Consensus 226 ~~te~~L~~~F~~~G 240 (283)
++++++|++.|.+.+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 678999999998654
No 244
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=25.18 E-value=68 Score=27.65 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=27.4
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHhccCCCceEEEEe
Q 023381 214 SPHKIYAGNLGWG------------LTSQGLRDAFQGQPGLLSAKVI 248 (283)
Q Consensus 214 ~~~~l~V~nLp~~------------~te~~L~~~F~~~G~i~~~~i~ 248 (283)
.+.+|++.++|-. .+++-|+..|+.||.|..|.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3457888888743 4578899999999999988774
No 245
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=22.62 E-value=93 Score=22.35 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=17.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHc
Q 023381 256 SRGFGFVTFETAEDLQSALDAM 277 (283)
Q Consensus 256 ~kg~afV~f~~~~~A~~Al~~l 277 (283)
---|.+++|.+.+.+.+|...+
T Consensus 65 ~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 65 EVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEEcCchhHHHHHHHHh
Confidence 3458999999999988887654
No 246
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=22.52 E-value=2.3e+02 Score=19.71 Aligned_cols=57 Identities=7% Similarity=0.076 Sum_probs=40.0
Q ss_pred EEEcCCCCCCCHHHHHHHhccC-C-CceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHc
Q 023381 218 IYAGNLGWGLTSQGLRDAFQGQ-P-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (283)
Q Consensus 218 l~V~nLp~~~te~~L~~~F~~~-G-~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~l 277 (283)
-|+.-.+..++..+|++.++.. | .|..|+.+.-+ ...--|+|++..-..|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 3444478899999999999874 3 44556655544 23346999999988888776544
No 247
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.50 E-value=2.6e+02 Score=24.70 Aligned_cols=81 Identities=9% Similarity=0.071 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCCccCCceeEEecccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCce
Q 023381 164 VEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL 243 (283)
Q Consensus 164 ~~~a~~a~~~l~g~~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 243 (283)
-.+...++..++-..++|--+-+-++..+-........-.....-...++....+--.-+=..+++++|..+|..||+..
T Consensus 82 F~~l~~~l~~~~i~~vDGiL~DLGVSS~QLD~~eRGFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L~~I~~~yGEEr 161 (314)
T COG0275 82 FANLAEALKELGIGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDLARIFKEYGEER 161 (314)
T ss_pred HHHHHHHHHhcCCCceeEEEEeccCCccccCCCcCCcccCCCCCcccCcCCCCCCCHHHHHhcCCHHHHHHHHHHhccHh
Confidence 44555566555555666766666665544332221111111111111111122221111223678999999999999765
Q ss_pred E
Q 023381 244 S 244 (283)
Q Consensus 244 ~ 244 (283)
.
T Consensus 162 ~ 162 (314)
T COG0275 162 F 162 (314)
T ss_pred h
Confidence 4
No 248
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.14 E-value=2.1e+02 Score=27.05 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=48.0
Q ss_pred CCCCeEEEcCCCCCCCH---HHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCcee
Q 023381 110 DEAARLYVGNLPYSMTS---SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te---~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l 184 (283)
.|..-=+||||+.-... ..+.++=.+||+|-.+++- ..-.|.-.+.+.|+.|+.. ++..+.+|..
T Consensus 30 GP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG---------~~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 30 GPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG---------SVPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEec---------CceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 34455678888775443 4455666689999988772 1236888899999999995 8999999886
No 249
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=20.24 E-value=2.3e+02 Score=19.87 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=29.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEE
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f 161 (283)
..-||||+++..+.+.-.....+..+.-.-+-+..+. . ..||+|-..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~--n-eqG~~~~t~ 71 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN--N-EQGFDFRTL 71 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC--C-CCCEEEEEe
Confidence 4569999999888765444444444444444333332 2 679999876
No 250
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.03 E-value=1.3e+02 Score=25.79 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=25.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEE
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~ 145 (283)
.....|+||||.++..-|.+++...-.+....++
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 3466799999999999999988876665454444
Done!