Query 023381
Match_columns 283
No_of_seqs 299 out of 2416
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 05:49:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxl_A Paraneoplastic encephal 100.0 5.2E-34 1.8E-38 227.3 20.2 155 111-282 1-155 (167)
2 1b7f_A Protein (SXL-lethal pro 100.0 5E-34 1.7E-38 227.9 19.4 155 111-282 2-156 (168)
3 4f02_A Polyadenylate-binding p 100.0 2.3E-34 7.8E-39 239.4 17.4 157 109-282 12-168 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 9.8E-34 3.4E-38 225.5 19.0 154 113-282 1-154 (166)
5 3nmr_A Cugbp ELAV-like family 100.0 4.9E-33 1.7E-37 223.4 19.9 155 111-282 2-161 (175)
6 1l3k_A Heterogeneous nuclear r 100.0 3.7E-33 1.3E-37 228.4 19.2 160 109-281 10-169 (196)
7 2qfj_A FBP-interacting repress 100.0 2E-33 6.8E-38 233.5 15.1 166 111-282 27-192 (216)
8 3tyt_A Heterogeneous nuclear r 100.0 3E-32 1E-36 225.1 16.5 166 110-282 2-190 (205)
9 2cjk_A Nuclear polyadenylated 100.0 3.5E-33 1.2E-37 222.8 10.3 152 111-282 2-153 (167)
10 2g4b_A Splicing factor U2AF 65 100.0 1.9E-31 6.6E-36 213.8 16.6 149 110-282 2-161 (172)
11 2yh0_A Splicing factor U2AF 65 100.0 8.4E-31 2.9E-35 214.7 18.2 166 110-282 2-181 (198)
12 3smz_A Protein raver-1, ribonu 100.0 1.6E-30 5.4E-35 225.2 20.4 159 109-282 92-251 (284)
13 3pgw_A U1-A; protein-RNA compl 100.0 5.1E-30 1.7E-34 221.8 19.7 167 108-282 5-269 (282)
14 2adc_A Polypyrimidine tract-bi 100.0 1.1E-29 3.8E-34 213.4 20.7 164 109-282 31-214 (229)
15 1fje_B Nucleolin RBD12, protei 100.0 3.7E-31 1.3E-35 212.9 10.7 153 108-282 9-161 (175)
16 3sde_A Paraspeckle component 1 100.0 3.7E-30 1.3E-34 220.4 15.9 142 108-279 18-159 (261)
17 1qm9_A Polypyrimidine tract-bi 100.0 9.8E-30 3.4E-34 208.7 17.7 161 112-282 3-183 (198)
18 2ghp_A U4/U6 snRNA-associated 100.0 3.9E-30 1.3E-34 223.6 15.9 161 110-282 115-278 (292)
19 3smz_A Protein raver-1, ribonu 100.0 6.2E-30 2.1E-34 221.5 15.0 143 110-282 20-162 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 2E-29 6.8E-34 219.1 16.4 149 106-282 35-184 (292)
21 3pgw_S U1-70K; protein-RNA com 99.9 2.1E-23 7.1E-28 190.2 13.9 167 25-192 2-182 (437)
22 4f25_A Polyadenylate-binding p 99.9 1.4E-22 4.6E-27 151.9 10.8 109 112-231 5-113 (115)
23 2kn4_A Immunoglobulin G-bindin 99.9 6.7E-22 2.3E-26 156.3 13.4 136 141-282 2-137 (158)
24 4fxv_A ELAV-like protein 1; RN 99.9 2.8E-21 9.6E-26 140.7 11.3 82 110-191 17-98 (99)
25 3s8s_A Histone-lysine N-methyl 99.8 4.2E-20 1.4E-24 137.0 11.1 82 110-191 4-85 (110)
26 2i2y_A Fusion protein consists 99.8 2.4E-20 8.2E-25 146.2 10.0 125 151-282 10-135 (150)
27 2lxi_A RNA-binding protein 10; 99.8 1.2E-20 4.1E-25 135.2 7.1 83 112-194 1-85 (91)
28 3p5t_L Cleavage and polyadenyl 99.8 5.3E-20 1.8E-24 131.5 8.2 81 113-193 2-84 (90)
29 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.7E-19 5.9E-24 127.8 10.6 82 110-191 4-85 (87)
30 2lkz_A RNA-binding protein 5; 99.8 3E-20 1E-24 133.9 6.4 81 110-190 7-93 (95)
31 2dnz_A Probable RNA-binding pr 99.8 4.3E-19 1.5E-23 128.0 12.5 85 110-194 3-87 (95)
32 2dgo_A Cytotoxic granule-assoc 99.8 7.9E-19 2.7E-23 131.2 14.2 89 107-195 10-98 (115)
33 1p27_B RNA-binding protein 8A; 99.8 3.4E-19 1.2E-23 131.2 11.8 86 107-192 18-103 (106)
34 3md1_A Nuclear and cytoplasmic 99.8 3.4E-19 1.2E-23 125.2 11.0 80 113-192 2-81 (83)
35 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.2E-19 7.5E-24 126.7 9.7 82 109-190 4-85 (85)
36 1whw_A Hypothetical protein ri 99.8 4.7E-19 1.6E-23 128.7 11.8 86 109-194 5-90 (99)
37 2x1f_A MRNA 3'-END-processing 99.8 2.6E-19 9E-24 129.4 10.3 83 111-193 1-83 (96)
38 2dgs_A DAZ-associated protein 99.8 6.4E-19 2.2E-23 128.1 11.9 86 108-194 6-91 (99)
39 2cpz_A CUG triplet repeat RNA- 99.8 6.5E-19 2.2E-23 131.7 12.2 85 110-194 23-107 (115)
40 2cq0_A Eukaryotic translation 99.8 3.5E-19 1.2E-23 130.4 10.5 88 107-194 10-97 (103)
41 2hvz_A Splicing factor, argini 99.8 3.3E-19 1.1E-23 130.1 10.2 101 113-225 1-101 (101)
42 2la6_A RNA-binding protein FUS 99.8 7.3E-19 2.5E-23 127.8 12.0 84 107-190 8-99 (99)
43 1x5s_A Cold-inducible RNA-bind 99.8 6.1E-19 2.1E-23 128.9 11.6 87 108-194 8-94 (102)
44 2do4_A Squamous cell carcinoma 99.8 8.2E-19 2.8E-23 127.7 12.1 85 108-193 13-97 (100)
45 2fy1_A RNA-binding motif prote 99.8 1.1E-18 3.8E-23 130.6 13.1 85 109-194 4-88 (116)
46 2dnm_A SRP46 splicing factor; 99.8 3.7E-19 1.3E-23 130.3 10.1 87 108-194 9-95 (103)
47 2cpf_A RNA binding motif prote 99.8 6.3E-19 2.2E-23 127.8 11.0 85 110-194 3-90 (98)
48 1x5u_A Splicing factor 3B subu 99.8 8E-19 2.7E-23 128.9 11.7 88 107-194 10-97 (105)
49 1x5t_A Splicing factor 3B subu 99.8 4.5E-19 1.6E-23 128.1 10.2 85 110-194 3-88 (96)
50 2cqc_A Arginine/serine-rich sp 99.8 5.9E-19 2E-23 127.2 10.8 84 107-190 10-93 (95)
51 2jrs_A RNA-binding protein 39; 99.8 8.7E-19 3E-23 129.5 11.6 85 108-192 22-106 (108)
52 2dnh_A Bruno-like 5, RNA bindi 99.8 1.6E-18 5.5E-23 127.3 13.0 85 109-194 12-99 (105)
53 1x4h_A RNA-binding protein 28; 99.8 1.2E-18 4E-23 129.3 12.3 88 107-194 10-103 (111)
54 3ns6_A Eukaryotic translation 99.8 1.6E-19 5.4E-24 131.6 7.2 81 111-191 5-92 (100)
55 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.8E-19 1.7E-23 129.4 9.6 88 108-195 8-95 (102)
56 1oo0_B CG8781-PA, drosophila Y 99.8 5.6E-19 1.9E-23 130.9 10.0 87 107-193 21-107 (110)
57 2cph_A RNA binding motif prote 99.8 1.4E-18 4.8E-23 128.0 12.1 87 108-194 11-99 (107)
58 2dgp_A Bruno-like 4, RNA bindi 99.8 1.1E-18 3.7E-23 128.4 11.4 87 108-194 9-98 (106)
59 2div_A TRNA selenocysteine ass 99.8 1E-18 3.6E-23 126.9 10.9 84 109-192 6-94 (99)
60 2dhg_A TRNA selenocysteine ass 99.8 2.2E-18 7.5E-23 126.4 12.6 86 108-194 5-92 (104)
61 3lqv_A PRE-mRNA branch site pr 99.8 2.1E-19 7.2E-24 134.3 7.0 105 109-241 5-109 (115)
62 2kxn_B Transformer-2 protein h 99.8 8.7E-19 3E-23 133.7 10.5 87 107-193 41-127 (129)
63 2d9p_A Polyadenylate-binding p 99.8 1.9E-18 6.4E-23 126.5 11.9 85 108-194 11-95 (103)
64 3s7r_A Heterogeneous nuclear r 99.8 1.1E-18 3.9E-23 123.7 10.3 81 108-189 7-87 (87)
65 1u6f_A Tcubp1, RNA-binding pro 99.8 3.2E-18 1.1E-22 132.2 13.6 86 109-194 39-124 (139)
66 3ucg_A Polyadenylate-binding p 99.8 1.3E-18 4.4E-23 123.8 10.3 80 112-192 6-85 (89)
67 2dng_A Eukaryotic translation 99.8 2E-18 7E-23 126.3 11.6 86 107-194 10-95 (103)
68 1s79_A Lupus LA protein; RRM, 99.8 8.4E-19 2.9E-23 128.4 9.3 79 110-190 9-87 (103)
69 4a8x_A RNA-binding protein wit 99.8 9.6E-19 3.3E-23 124.2 9.4 83 111-193 3-86 (88)
70 2e5h_A Zinc finger CCHC-type a 99.8 7.3E-19 2.5E-23 126.5 8.8 82 109-190 13-94 (94)
71 2cpe_A RNA-binding protein EWS 99.8 1.5E-18 5.2E-23 129.2 10.6 87 108-194 11-105 (113)
72 3n9u_C Cleavage and polyadenyl 99.8 1.4E-18 4.8E-23 136.7 10.9 80 111-190 54-135 (156)
73 2ywk_A Putative RNA-binding pr 99.8 1.7E-18 5.9E-23 124.7 10.1 81 109-190 13-93 (95)
74 2mss_A Protein (musashi1); RNA 99.8 8.7E-19 3E-23 120.7 8.0 75 114-189 1-75 (75)
75 1p1t_A Cleavage stimulation fa 99.8 1.9E-18 6.6E-23 126.6 10.2 83 111-193 7-89 (104)
76 2cqd_A RNA-binding region cont 99.8 5.1E-18 1.7E-22 127.0 12.6 85 107-192 12-96 (116)
77 4fxv_A ELAV-like protein 1; RN 99.8 1.5E-18 5.1E-23 126.2 9.4 70 213-282 17-86 (99)
78 1wi8_A EIF-4B, eukaryotic tran 99.8 2.1E-18 7.2E-23 126.5 10.1 85 109-195 12-97 (104)
79 3ulh_A THO complex subunit 4; 99.8 3.3E-18 1.1E-22 126.1 11.0 82 108-190 25-106 (107)
80 2m2b_A RNA-binding protein 10; 99.8 9E-19 3.1E-23 134.0 8.1 84 109-193 20-109 (131)
81 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.9E-18 2.4E-22 123.5 12.4 86 107-194 10-95 (103)
82 2do0_A HnRNP M, heterogeneous 99.8 1.1E-17 3.7E-22 124.7 13.7 85 108-193 11-95 (114)
83 3ex7_B RNA-binding protein 8A; 99.8 2.6E-18 9E-23 130.4 10.4 88 107-194 17-104 (126)
84 2dh8_A DAZ-associated protein 99.8 2.2E-18 7.5E-23 126.6 9.7 86 108-194 12-97 (105)
85 1h2v_Z 20 kDa nuclear CAP bind 99.8 5E-18 1.7E-22 133.7 12.4 87 108-194 35-121 (156)
86 2dgv_A HnRNP M, heterogeneous 99.8 5.7E-18 2E-22 121.2 11.5 83 109-193 5-87 (92)
87 2khc_A Testis-specific RNP-typ 99.8 8.9E-19 3E-23 131.5 7.6 81 110-190 38-118 (118)
88 2cqp_A RNA-binding protein 12; 99.8 1.5E-18 5.2E-23 125.8 8.6 84 109-192 12-95 (98)
89 2dis_A Unnamed protein product 99.8 6.1E-18 2.1E-22 125.0 11.8 86 109-194 5-94 (109)
90 1x4e_A RNA binding motif, sing 99.8 5.8E-19 2E-23 124.6 5.5 81 110-190 3-83 (85)
91 2cqg_A TDP-43, TAR DNA-binding 99.8 1.2E-17 4.1E-22 122.2 12.6 86 107-194 10-95 (103)
92 2ek1_A RNA-binding protein 12; 99.8 1.4E-18 5E-23 125.1 7.4 80 111-190 14-93 (95)
93 2rs2_A Musashi-1, RNA-binding 99.8 3E-18 1E-22 126.8 9.2 84 109-193 22-105 (109)
94 2cq3_A RNA-binding protein 9; 99.8 1.1E-17 3.9E-22 122.3 12.1 86 107-194 10-95 (103)
95 3s8s_A Histone-lysine N-methyl 99.8 3.8E-18 1.3E-22 126.4 9.6 70 213-282 4-73 (110)
96 1sjq_A Polypyrimidine tract-bi 99.8 4.2E-18 1.4E-22 124.2 9.6 80 109-194 13-94 (105)
97 2dgw_A Probable RNA-binding pr 99.8 9E-18 3.1E-22 120.0 11.2 81 109-192 7-87 (91)
98 2ki2_A SS-DNA binding protein 99.7 9.3E-19 3.2E-23 124.9 5.5 80 113-193 2-81 (90)
99 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.5E-18 5.2E-23 120.0 6.4 76 113-189 1-76 (77)
100 2dgx_A KIAA0430 protein; RRM d 99.7 6.6E-18 2.3E-22 122.0 9.9 80 110-192 7-90 (96)
101 2jwn_A Embryonic polyadenylate 99.7 8.5E-18 2.9E-22 127.2 10.9 81 112-193 36-116 (124)
102 2wbr_A GW182, gawky, LD47780P; 99.7 4.1E-18 1.4E-22 119.0 8.3 73 111-189 6-78 (89)
103 2kn4_A Immunoglobulin G-bindin 99.7 9.4E-18 3.2E-22 132.4 11.3 85 110-194 68-152 (158)
104 2kt5_A RNA and export factor-b 99.7 1.6E-17 5.6E-22 125.7 12.1 85 108-193 31-115 (124)
105 1x4b_A Heterogeneous nuclear r 99.7 8.3E-18 2.8E-22 125.8 10.4 82 112-194 27-108 (116)
106 1x4a_A Splicing factor, argini 99.7 2.5E-17 8.5E-22 121.8 12.3 84 108-194 18-101 (109)
107 2lea_A Serine/arginine-rich sp 99.7 3.9E-18 1.3E-22 131.1 8.2 86 109-194 44-129 (135)
108 1wg5_A Heterogeneous nuclear r 99.7 1.1E-17 3.7E-22 122.8 10.2 82 109-192 12-94 (104)
109 2nlw_A Eukaryotic translation 99.7 5.3E-18 1.8E-22 124.6 8.3 82 108-191 11-99 (105)
110 3r27_A HnRNP L, heterogeneous 99.7 1.1E-17 3.9E-22 120.7 9.8 80 107-192 16-97 (100)
111 2cq4_A RNA binding motif prote 99.7 2E-18 6.8E-23 128.8 6.0 79 112-191 25-103 (114)
112 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.9E-18 6.4E-23 125.9 5.7 82 108-191 15-97 (100)
113 1rk8_A CG8781-PA, CG8781-PA pr 99.7 6.4E-18 2.2E-22 134.4 9.1 124 159-282 11-139 (165)
114 2a3j_A U1 small nuclear ribonu 99.7 1.5E-17 5.1E-22 126.2 10.6 81 109-192 26-110 (127)
115 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 9.4E-18 3.2E-22 129.5 9.6 80 110-189 61-140 (140)
116 1wez_A HnRNP H', FTP-3, hetero 99.7 1.2E-17 4.2E-22 122.0 9.7 82 109-193 12-93 (102)
117 1x5o_A RNA binding motif, sing 99.7 2.3E-17 8E-22 122.9 11.3 81 110-191 23-111 (114)
118 1iqt_A AUF1, heterogeneous nuc 99.7 3.2E-18 1.1E-22 117.8 5.9 75 114-189 1-75 (75)
119 2err_A Ataxin-2-binding protei 99.7 7.9E-18 2.7E-22 124.6 8.4 82 109-192 26-107 (109)
120 2ad9_A Polypyrimidine tract-bi 99.7 2.2E-17 7.5E-22 123.3 10.8 80 109-194 28-109 (119)
121 2hgl_A HNRPF protein, heteroge 99.7 7.5E-18 2.6E-22 129.3 8.5 79 110-190 42-123 (136)
122 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.8E-17 6.3E-22 131.7 11.1 86 109-194 69-154 (165)
123 2cpi_A CCR4-NOT transcription 99.7 9.6E-18 3.3E-22 124.5 8.7 86 108-193 11-102 (111)
124 2krb_A Eukaryotic translation 99.7 5.8E-18 2E-22 118.4 7.1 73 112-186 1-80 (81)
125 1x4d_A Matrin 3; structural ge 99.7 7.1E-18 2.4E-22 122.8 7.7 81 107-193 10-93 (102)
126 2db1_A Heterogeneous nuclear r 99.7 8.4E-18 2.9E-22 126.2 8.4 80 109-190 14-96 (118)
127 2cpy_A RNA-binding protein 12; 99.7 4.9E-18 1.7E-22 126.7 7.0 81 109-191 12-93 (114)
128 1wex_A Hypothetical protein (r 99.7 3.6E-17 1.2E-21 119.7 11.1 80 109-194 12-93 (104)
129 2cpx_A Hypothetical protein FL 99.7 5.1E-18 1.7E-22 126.7 6.5 86 109-194 22-107 (115)
130 2dnq_A RNA-binding protein 4B; 99.7 5.9E-17 2E-21 115.5 11.8 78 109-194 5-82 (90)
131 2lkz_A RNA-binding protein 5; 99.7 6.9E-18 2.4E-22 121.5 6.8 67 214-280 8-76 (95)
132 2cq1_A PTB-like protein L; RRM 99.7 3.4E-17 1.2E-21 119.2 10.1 81 108-194 11-93 (101)
133 1wel_A RNA-binding protein 12; 99.7 6.5E-18 2.2E-22 127.9 6.6 81 109-190 22-102 (124)
134 2jvr_A Nucleolar protein 3; RN 99.7 1.7E-17 5.7E-22 122.8 8.6 79 110-192 26-105 (111)
135 1fj7_A Nucleolin RBD1, protein 99.7 3.3E-18 1.1E-22 124.7 4.5 82 109-192 14-95 (101)
136 2fc9_A NCL protein; structure 99.7 2.3E-17 7.9E-22 120.2 8.9 83 108-194 11-93 (101)
137 2lxi_A RNA-binding protein 10; 99.7 3.7E-18 1.3E-22 122.1 4.6 65 216-280 2-67 (91)
138 3q2s_C Cleavage and polyadenyl 99.7 2E-17 6.8E-22 138.3 9.8 80 111-190 67-148 (229)
139 2lea_A Serine/arginine-rich sp 99.7 6.5E-18 2.2E-22 129.8 6.0 110 155-282 5-114 (135)
140 2fc8_A NCL protein; structure 99.7 5.6E-17 1.9E-21 118.3 10.6 85 107-194 10-94 (102)
141 2e5j_A Methenyltetrahydrofolat 99.7 6.2E-17 2.1E-21 117.1 10.7 80 109-193 16-95 (97)
142 1why_A Hypothetical protein ri 99.7 6.6E-17 2.3E-21 116.9 10.6 79 109-193 14-94 (97)
143 2lmi_A GRSF-1, G-rich sequence 99.7 1E-17 3.4E-22 123.6 6.0 80 109-190 8-90 (107)
144 1x4g_A Nucleolysin TIAR; struc 99.7 1E-16 3.5E-21 118.5 10.9 80 109-194 22-101 (109)
145 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.5E-17 1.5E-21 115.2 8.6 70 213-282 4-73 (87)
146 2dha_A FLJ20171 protein; RRM d 99.7 3E-17 1E-21 123.7 8.0 79 110-190 21-103 (123)
147 3p5t_L Cleavage and polyadenyl 99.7 1.7E-17 5.8E-22 118.4 6.3 67 216-282 2-70 (90)
148 1x4e_A RNA binding motif, sing 99.7 3.4E-17 1.2E-21 115.4 7.7 69 214-282 4-72 (85)
149 3ns6_A Eukaryotic translation 99.7 1.4E-17 4.9E-22 121.2 5.8 68 215-282 6-79 (100)
150 1x4c_A Splicing factor, argini 99.7 1.6E-16 5.6E-21 117.2 11.3 78 110-194 13-95 (108)
151 3mdf_A Peptidyl-prolyl CIS-tra 99.7 5.1E-17 1.7E-21 114.4 8.2 70 213-282 5-74 (85)
152 2cqc_A Arginine/serine-rich sp 99.7 8.7E-17 3E-21 115.7 9.6 71 212-282 12-82 (95)
153 3egn_A RNA-binding protein 40; 99.7 1.1E-17 3.7E-22 129.9 5.2 88 107-194 40-132 (143)
154 2dnh_A Bruno-like 5, RNA bindi 99.7 1.5E-16 5E-21 116.7 11.0 69 213-282 13-81 (105)
155 2jvo_A Nucleolar protein 3; nu 99.7 8.5E-17 2.9E-21 118.8 9.7 77 109-193 28-104 (108)
156 2div_A TRNA selenocysteine ass 99.7 7.5E-17 2.6E-21 117.0 9.3 70 213-282 7-77 (99)
157 1nu4_A U1A RNA binding domain; 99.7 2.7E-17 9.1E-22 118.9 6.8 81 109-192 5-89 (97)
158 2e5h_A Zinc finger CCHC-type a 99.7 1.3E-16 4.4E-21 114.6 10.4 71 212-282 13-83 (94)
159 2cpj_A Non-POU domain-containi 99.7 9.7E-17 3.3E-21 116.5 9.7 80 108-193 11-90 (99)
160 2lcw_A RNA-binding protein FUS 99.5 1.5E-18 5E-23 130.0 0.0 86 109-194 4-97 (116)
161 2xnq_A Nuclear polyadenylated 99.7 1.4E-16 4.7E-21 115.3 10.4 77 107-191 17-94 (97)
162 2cq0_A Eukaryotic translation 99.7 9.9E-17 3.4E-21 117.3 9.8 71 212-282 12-82 (103)
163 2la4_A Nuclear and cytoplasmic 99.7 7.5E-17 2.6E-21 117.5 9.1 75 111-191 26-100 (101)
164 2dnn_A RNA-binding protein 12; 99.7 5.1E-17 1.8E-21 119.9 8.2 76 112-190 16-91 (109)
165 2x1f_A MRNA 3'-END-processing 99.7 6.9E-17 2.4E-21 116.6 8.7 68 215-282 2-69 (96)
166 2dnz_A Probable RNA-binding pr 99.7 1.2E-16 4.2E-21 114.9 10.0 69 214-282 4-72 (95)
167 2ytc_A PRE-mRNA-splicing facto 99.7 9.9E-17 3.4E-21 113.0 9.2 76 109-190 9-85 (85)
168 2la6_A RNA-binding protein FUS 99.7 1.5E-16 5.2E-21 115.4 10.5 71 212-282 10-88 (99)
169 1x4f_A Matrin 3; structural ge 99.7 4.3E-17 1.5E-21 120.4 7.6 79 109-193 22-103 (112)
170 2cpd_A Apobec-1 stimulating pr 99.7 2.9E-16 9.8E-21 114.0 11.9 78 108-193 11-90 (99)
171 1x5u_A Splicing factor 3B subu 99.7 1.3E-16 4.3E-21 117.1 10.0 71 212-282 12-82 (105)
172 3md1_A Nuclear and cytoplasmic 99.7 9.2E-17 3.2E-21 112.6 8.8 67 216-282 2-68 (83)
173 2dgp_A Bruno-like 4, RNA bindi 99.7 7.5E-17 2.6E-21 118.5 8.8 70 213-282 11-80 (106)
174 2dnp_A RNA-binding protein 14; 99.7 2.1E-16 7E-21 112.7 10.7 78 108-193 5-82 (90)
175 2j8a_A Histone-lysine N-methyl 99.7 5.9E-17 2E-21 120.6 7.9 78 113-190 3-94 (136)
176 2dgu_A Heterogeneous nuclear r 99.7 2.6E-16 9E-21 115.0 11.3 78 110-195 9-86 (103)
177 2dgt_A RNA-binding protein 30; 99.7 2.7E-16 9.2E-21 112.5 11.1 79 108-194 6-84 (92)
178 2cqb_A Peptidyl-prolyl CIS-tra 99.7 7.9E-17 2.7E-21 117.6 8.4 71 212-282 9-79 (102)
179 2dgs_A DAZ-associated protein 99.7 1.9E-16 6.5E-21 114.9 10.3 69 213-282 8-76 (99)
180 1whw_A Hypothetical protein ri 99.7 1.1E-16 3.9E-21 116.0 9.1 70 213-282 6-75 (99)
181 2dgo_A Cytotoxic granule-assoc 99.7 1.8E-16 6.3E-21 118.2 10.4 71 212-282 12-82 (115)
182 2kvi_A Nuclear polyadenylated 99.7 1.2E-16 4.2E-21 115.3 9.0 79 108-194 6-85 (96)
183 1x5s_A Cold-inducible RNA-bind 99.7 1.3E-16 4.5E-21 116.4 9.2 71 212-282 9-79 (102)
184 2xs2_A Deleted in azoospermia- 99.7 3.5E-17 1.2E-21 119.5 6.0 79 111-192 8-86 (102)
185 1fjc_A Nucleolin RBD2, protein 99.7 4.4E-17 1.5E-21 117.6 6.4 78 110-192 14-91 (96)
186 2jrs_A RNA-binding protein 39; 99.7 2.5E-16 8.5E-21 116.2 10.6 71 212-282 23-93 (108)
187 1whx_A Hypothetical protein ri 99.7 1.2E-16 4.1E-21 118.5 8.7 76 111-192 9-84 (111)
188 3pgw_S U1-70K; protein-RNA com 99.7 3E-18 1E-22 156.2 -0.1 70 213-282 100-169 (437)
189 2khc_A Testis-specific RNP-typ 99.7 2.4E-16 8.4E-21 118.1 10.3 71 212-282 37-107 (118)
190 2qfj_A FBP-interacting repress 99.7 4E-16 1.4E-20 128.8 12.5 85 110-194 123-207 (216)
191 2dnm_A SRP46 splicing factor; 99.7 1.2E-16 4.1E-21 116.8 8.3 70 213-282 11-80 (103)
192 1p27_B RNA-binding protein 8A; 99.7 1.7E-16 5.7E-21 116.6 9.1 70 213-282 21-90 (106)
193 2do4_A Squamous cell carcinoma 99.7 3.1E-16 1.1E-20 114.0 10.3 69 213-282 15-83 (100)
194 2cpz_A CUG triplet repeat RNA- 99.7 3.4E-16 1.1E-20 116.8 10.7 70 213-282 23-92 (115)
195 2i2y_A Fusion protein consists 99.7 2.3E-16 7.8E-21 123.3 10.2 81 107-192 68-148 (150)
196 2cph_A RNA binding motif prote 99.7 2.8E-16 9.7E-21 115.5 10.1 71 212-282 12-84 (107)
197 2e5g_A U6 snRNA-specific termi 99.7 3.6E-16 1.2E-20 112.3 10.4 79 109-193 5-83 (94)
198 1x5t_A Splicing factor 3B subu 99.7 1.2E-16 4.1E-21 115.2 7.9 69 214-282 4-73 (96)
199 3md3_A Nuclear and cytoplasmic 99.7 3.7E-16 1.3E-20 123.4 11.5 83 108-190 83-165 (166)
200 1x4h_A RNA-binding protein 28; 99.7 3E-16 1E-20 116.2 10.2 67 212-278 12-78 (111)
201 2f3j_A RNA and export factor b 99.7 2.1E-16 7.1E-21 127.0 10.0 83 108-191 84-166 (177)
202 1s79_A Lupus LA protein; RRM, 99.7 1.2E-16 4E-21 116.9 7.7 67 214-282 10-76 (103)
203 2cqh_A IGF-II mRNA-binding pro 99.7 1.6E-16 5.5E-21 113.9 8.4 79 109-194 5-85 (93)
204 4f25_A Polyadenylate-binding p 99.7 1.3E-16 4.5E-21 119.1 8.1 66 215-282 5-70 (115)
205 2hgm_A HNRPF protein, heteroge 99.7 8.5E-17 2.9E-21 121.6 6.9 78 110-190 40-119 (126)
206 1wf1_A RNA-binding protein RAL 99.7 3E-16 1E-20 116.1 9.8 75 111-193 26-101 (110)
207 2hgn_A Heterogeneous nuclear r 99.7 3.9E-17 1.3E-21 125.7 4.9 81 110-193 44-124 (139)
208 2kxn_B Transformer-2 protein h 99.7 2.7E-16 9.3E-21 119.8 9.5 71 212-282 43-113 (129)
209 2cpf_A RNA binding motif prote 99.7 1.7E-16 5.7E-21 114.9 7.9 69 214-282 4-75 (98)
210 3n9u_C Cleavage and polyadenyl 99.7 1.8E-16 6.1E-21 124.7 8.7 69 214-282 54-124 (156)
211 2d9p_A Polyadenylate-binding p 99.7 4.2E-16 1.5E-20 113.9 10.1 68 213-282 13-80 (103)
212 2dhg_A TRNA selenocysteine ass 99.7 3.6E-16 1.2E-20 114.4 9.7 68 213-281 7-75 (104)
213 2krb_A Eukaryotic translation 99.7 1.1E-16 3.8E-21 111.7 6.7 65 216-282 2-72 (81)
214 2cqp_A RNA-binding protein 12; 99.7 1.9E-16 6.5E-21 114.6 8.0 70 213-282 13-82 (98)
215 2fy1_A RNA-binding motif prote 99.7 3.3E-16 1.1E-20 117.0 9.4 69 213-282 5-73 (116)
216 2mss_A Protein (musashi1); RNA 99.7 1.3E-16 4.5E-21 109.6 6.5 65 217-282 1-65 (75)
217 2cpe_A RNA-binding protein EWS 99.7 4E-16 1.4E-20 116.0 9.7 70 213-282 13-90 (113)
218 2dng_A Eukaryotic translation 99.7 4.4E-16 1.5E-20 113.8 9.7 69 212-282 12-80 (103)
219 2m2b_A RNA-binding protein 10; 99.7 2.3E-16 8E-21 120.5 8.4 67 213-280 21-89 (131)
220 1oo0_B CG8781-PA, drosophila Y 99.7 2.8E-16 9.6E-21 116.2 8.5 70 213-282 24-93 (110)
221 2ek1_A RNA-binding protein 12; 99.7 1.3E-16 4.5E-21 114.7 6.3 69 214-282 14-82 (95)
222 3s7r_A Heterogeneous nuclear r 99.7 3.9E-16 1.3E-20 110.4 8.6 64 213-276 9-72 (87)
223 3ulh_A THO complex subunit 4; 99.7 4.4E-16 1.5E-20 114.6 9.1 69 213-282 27-95 (107)
224 1p1t_A Cleavage stimulation fa 99.6 2.9E-16 9.9E-21 114.9 8.0 69 214-282 7-75 (104)
225 1x5p_A Negative elongation fac 99.6 1.2E-15 4.2E-20 110.2 11.1 80 107-194 10-89 (97)
226 2e44_A Insulin-like growth fac 99.6 6E-16 2E-20 111.5 9.4 79 110-192 13-92 (96)
227 1x5o_A RNA binding motif, sing 99.6 1.1E-15 3.7E-20 113.8 11.1 69 213-282 23-91 (114)
228 3ucg_A Polyadenylate-binding p 99.6 3.4E-16 1.2E-20 111.2 7.9 67 215-282 6-72 (89)
229 2g4b_A Splicing factor U2AF 65 99.6 6.5E-16 2.2E-20 123.0 10.4 79 111-189 93-171 (172)
230 2cq2_A Hypothetical protein LO 99.6 3.1E-16 1.1E-20 115.9 7.8 78 108-191 21-105 (114)
231 2ywk_A Putative RNA-binding pr 99.6 3.4E-16 1.2E-20 112.6 7.9 69 213-282 14-82 (95)
232 1wi8_A EIF-4B, eukaryotic tran 99.6 5.3E-16 1.8E-20 113.6 8.9 68 213-282 13-81 (104)
233 1sjr_A Polypyrimidine tract-bi 99.6 2.3E-15 7.7E-20 118.1 13.0 78 112-193 46-125 (164)
234 4a8x_A RNA-binding protein wit 99.6 2.9E-16 9.8E-21 111.2 7.3 69 214-282 3-72 (88)
235 1wg1_A KIAA1579 protein, homol 99.6 3.1E-16 1.1E-20 111.3 7.3 75 110-191 3-77 (88)
236 2do0_A HnRNP M, heterogeneous 99.6 1.2E-15 4.2E-20 113.5 10.6 69 213-282 13-81 (114)
237 2cqd_A RNA-binding region cont 99.6 8.6E-16 2.9E-20 114.7 9.7 68 212-279 14-81 (116)
238 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.3E-15 4.6E-20 117.4 10.9 73 210-282 58-130 (140)
239 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.4E-16 1.2E-20 113.8 7.1 68 213-282 17-85 (100)
240 2dgv_A HnRNP M, heterogeneous 99.6 1.2E-15 4E-20 109.0 9.8 68 213-282 6-73 (92)
241 2dh8_A DAZ-associated protein 99.6 7.8E-16 2.7E-20 112.8 8.9 70 212-282 13-82 (105)
242 2yh0_A Splicing factor U2AF 65 99.6 1.4E-15 4.9E-20 123.8 11.3 84 109-192 111-194 (198)
243 1sjq_A Polypyrimidine tract-bi 99.6 5.9E-16 2E-20 112.8 7.9 62 212-279 13-74 (105)
244 1wez_A HnRNP H', FTP-3, hetero 99.6 7.5E-16 2.6E-20 112.4 8.5 67 213-282 13-79 (102)
245 3ex7_B RNA-binding protein 8A; 99.6 6.8E-16 2.3E-20 117.0 8.6 70 213-282 20-89 (126)
246 2cq3_A RNA-binding protein 9; 99.6 2.3E-15 7.7E-20 110.0 11.1 69 212-282 12-80 (103)
247 2hzc_A Splicing factor U2AF 65 99.6 6.8E-16 2.3E-20 109.1 8.0 72 110-188 4-86 (87)
248 2cq4_A RNA binding motif prote 99.6 4.6E-16 1.6E-20 115.8 7.4 68 214-282 24-91 (114)
249 3zzy_A Polypyrimidine tract-bi 99.6 2.2E-15 7.6E-20 113.9 11.1 78 111-193 27-107 (130)
250 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.6E-16 1.2E-20 107.9 6.1 63 216-278 1-63 (77)
251 1u6f_A Tcubp1, RNA-binding pro 99.6 8E-16 2.7E-20 118.6 8.7 71 212-282 39-109 (139)
252 2diu_A KIAA0430 protein; struc 99.6 1.8E-15 6.3E-20 106.5 9.6 74 110-193 6-85 (96)
253 1b7f_A Protein (SXL-lethal pro 99.6 2.5E-15 8.4E-20 119.0 11.7 81 109-189 86-168 (168)
254 2cjk_A Nuclear polyadenylated 99.6 6.7E-16 2.3E-20 122.3 8.3 80 111-191 86-165 (167)
255 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.8E-15 6.2E-20 110.5 9.8 69 212-282 12-80 (103)
256 1wg5_A Heterogeneous nuclear r 99.6 1.3E-15 4.4E-20 111.6 9.0 68 213-282 13-81 (104)
257 2dnl_A Cytoplasmic polyadenyla 99.6 1.3E-15 4.5E-20 113.4 9.2 78 109-189 5-85 (114)
258 2cqg_A TDP-43, TAR DNA-binding 99.6 1.9E-15 6.6E-20 110.3 9.9 65 212-276 12-76 (103)
259 2dnl_A Cytoplasmic polyadenyla 99.6 6.3E-16 2.2E-20 115.2 7.4 68 214-282 7-80 (114)
260 2cpy_A RNA-binding protein 12; 99.6 8.8E-16 3E-20 114.4 8.1 68 213-282 13-81 (114)
261 2wbr_A GW182, gawky, LD47780P; 99.6 1E-15 3.5E-20 106.8 7.8 63 214-282 6-68 (89)
262 2ki2_A SS-DNA binding protein 99.6 2.4E-16 8.1E-21 112.3 4.7 66 216-282 2-67 (90)
263 2dgw_A Probable RNA-binding pr 99.6 2.1E-15 7E-20 107.6 9.6 67 213-282 8-74 (91)
264 2nlw_A Eukaryotic translation 99.6 8.8E-16 3E-20 112.7 7.7 67 214-282 14-86 (105)
265 2kt5_A RNA and export factor-b 99.6 4.2E-15 1.4E-19 112.3 11.6 70 212-282 32-101 (124)
266 1l3k_A Heterogeneous nuclear r 99.6 2.2E-15 7.4E-20 122.5 10.7 84 110-194 102-185 (196)
267 2dgx_A KIAA0430 protein; RRM d 99.6 1.1E-15 3.6E-20 110.4 7.8 67 213-282 7-77 (96)
268 1wel_A RNA-binding protein 12; 99.6 9E-16 3.1E-20 116.1 7.7 70 212-282 22-91 (124)
269 2cpi_A CCR4-NOT transcription 99.6 1.7E-15 5.8E-20 112.3 8.9 70 213-282 13-88 (111)
270 3beg_B Splicing factor, argini 99.6 1.3E-15 4.5E-20 113.6 8.4 75 110-191 14-93 (115)
271 3d2w_A TAR DNA-binding protein 99.6 1.3E-15 4.5E-20 108.3 7.9 76 108-192 7-84 (89)
272 2hgl_A HNRPF protein, heteroge 99.6 9.2E-16 3.2E-20 117.6 7.5 68 213-282 42-112 (136)
273 4f02_A Polyadenylate-binding p 99.6 2.2E-15 7.6E-20 124.6 10.4 79 111-191 102-180 (213)
274 2dnn_A RNA-binding protein 12; 99.6 1.2E-15 4E-20 112.6 7.8 65 215-282 16-80 (109)
275 1fxl_A Paraneoplastic encephal 99.6 3.9E-15 1.3E-19 117.6 11.4 80 110-189 86-167 (167)
276 2lmi_A GRSF-1, G-rich sequence 99.6 9.5E-16 3.3E-20 112.9 7.3 68 213-282 9-79 (107)
277 2pe8_A Splicing factor 45; RRM 99.6 3.8E-15 1.3E-19 109.1 10.4 82 109-190 5-92 (105)
278 1h2v_Z 20 kDa nuclear CAP bind 99.6 2.1E-15 7.3E-20 118.6 9.7 70 213-282 37-106 (156)
279 2db1_A Heterogeneous nuclear r 99.6 1.6E-15 5.6E-20 113.6 8.5 68 213-282 15-85 (118)
280 2rs2_A Musashi-1, RNA-binding 99.6 1.4E-15 4.6E-20 112.4 8.0 66 213-278 23-88 (109)
281 3nmr_A Cugbp ELAV-like family 99.6 4E-15 1.4E-19 118.5 11.1 79 111-190 94-175 (175)
282 2jwn_A Embryonic polyadenylate 99.6 1.3E-15 4.5E-20 115.0 7.8 67 215-282 36-102 (124)
283 1x4b_A Heterogeneous nuclear r 99.6 2.1E-15 7.1E-20 112.6 8.0 68 214-282 26-93 (116)
284 2hgn_A Heterogeneous nuclear r 99.6 6.4E-16 2.2E-20 118.9 5.3 67 213-282 44-110 (139)
285 2cq1_A PTB-like protein L; RRM 99.6 3.2E-15 1.1E-19 108.7 8.6 61 212-278 12-72 (101)
286 2e5i_A Heterogeneous nuclear r 99.6 8.1E-15 2.8E-19 110.2 10.9 74 114-193 27-103 (124)
287 1x4d_A Matrin 3; structural ge 99.6 1.5E-15 5.3E-20 110.4 6.7 63 212-280 12-75 (102)
288 2a3j_A U1 small nuclear ribonu 99.6 3.2E-15 1.1E-19 113.3 8.6 67 213-282 27-97 (127)
289 2dis_A Unnamed protein product 99.6 1.7E-15 5.8E-20 111.8 6.8 65 214-278 7-73 (109)
290 1iqt_A AUF1, heterogeneous nuc 99.6 6.9E-16 2.4E-20 105.9 4.4 64 217-281 1-64 (75)
291 2voo_A Lupus LA protein; RNA-b 99.6 5.6E-15 1.9E-19 120.3 10.4 79 111-191 108-186 (193)
292 2err_A Ataxin-2-binding protei 99.6 3.7E-15 1.3E-19 110.1 8.5 69 212-282 26-94 (109)
293 3r27_A HnRNP L, heterogeneous 99.6 3E-15 1E-19 108.0 7.6 63 212-280 18-80 (100)
294 2ad9_A Polypyrimidine tract-bi 99.6 3.3E-15 1.1E-19 111.5 8.1 62 212-279 28-89 (119)
295 3q2s_C Cleavage and polyadenyl 99.6 1.7E-15 5.8E-20 126.6 7.3 69 214-282 67-137 (229)
296 1x4a_A Splicing factor, argini 99.6 1.3E-14 4.3E-19 107.1 11.1 67 213-282 20-86 (109)
297 1wex_A Hypothetical protein (r 99.6 5E-15 1.7E-19 108.3 8.8 63 212-280 12-74 (104)
298 1wf0_A TDP-43, TAR DNA-binding 99.6 1.6E-15 5.3E-20 107.6 5.9 78 110-194 3-80 (88)
299 2bz2_A Negative elongation fac 99.6 6.5E-15 2.2E-19 110.8 9.5 78 109-194 36-113 (121)
300 2dha_A FLJ20171 protein; RRM d 99.6 2.2E-15 7.6E-20 113.4 6.8 67 214-282 22-92 (123)
301 2fc9_A NCL protein; structure 99.6 6.9E-15 2.3E-19 107.0 8.9 67 212-282 12-78 (101)
302 1x4c_A Splicing factor, argini 99.6 1.1E-14 3.6E-19 107.4 9.8 63 213-282 13-75 (108)
303 2jvr_A Nucleolar protein 3; RN 99.6 3E-15 1E-19 110.7 6.7 65 214-282 27-92 (111)
304 2j8a_A Histone-lysine N-methyl 99.6 3.1E-15 1.1E-19 111.4 6.4 67 216-282 3-83 (136)
305 2cpj_A Non-POU domain-containi 99.6 1.3E-14 4.5E-19 105.1 9.4 65 212-282 12-76 (99)
306 2xs2_A Deleted in azoospermia- 99.6 1.4E-15 4.7E-20 110.9 3.6 67 214-281 8-77 (102)
307 2cpx_A Hypothetical protein FL 99.6 3.2E-15 1.1E-19 111.4 5.7 70 213-282 23-92 (115)
308 1fj7_A Nucleolin RBD1, protein 99.6 1.1E-15 3.7E-20 111.2 3.0 67 214-282 16-82 (101)
309 1x4f_A Matrin 3; structural ge 99.6 7.6E-15 2.6E-19 108.3 7.5 62 212-279 22-84 (112)
310 2fc8_A NCL protein; structure 99.6 1.8E-14 6.1E-19 104.9 9.5 68 212-282 12-79 (102)
311 1why_A Hypothetical protein ri 99.6 1.2E-14 4.2E-19 104.8 8.4 64 213-282 15-78 (97)
312 3lqv_A PRE-mRNA branch site pr 99.6 1.7E-14 5.8E-19 107.4 9.3 67 213-282 6-72 (115)
313 2dnq_A RNA-binding protein 4B; 99.5 2E-14 6.7E-19 102.3 9.1 62 213-282 6-67 (90)
314 2hgm_A HNRPF protein, heteroge 99.5 9.3E-15 3.2E-19 110.3 7.5 65 213-280 40-106 (126)
315 2ytc_A PRE-mRNA-splicing facto 99.5 2.7E-14 9.2E-19 100.3 9.3 64 213-282 10-74 (85)
316 2lcw_A RNA-binding protein FUS 99.3 4.4E-16 1.5E-20 116.3 0.0 70 213-282 5-82 (116)
317 2cq2_A Hypothetical protein LO 99.5 6.5E-15 2.2E-19 108.8 6.3 64 213-282 23-88 (114)
318 2la4_A Nuclear and cytoplasmic 99.5 2.4E-14 8.4E-19 104.0 9.1 63 214-282 26-88 (101)
319 2e5j_A Methenyltetrahydrofolat 99.5 3E-14 1E-18 102.8 9.5 65 213-282 17-81 (97)
320 2f3j_A RNA and export factor b 99.5 1.5E-14 5.3E-19 116.0 8.7 70 212-282 85-154 (177)
321 3beg_B Splicing factor, argini 99.5 1.1E-14 3.7E-19 108.6 6.9 62 214-282 15-76 (115)
322 2jvo_A Nucleolar protein 3; nu 99.5 2.6E-14 9E-19 105.3 8.8 62 213-282 29-90 (108)
323 2xnq_A Nuclear polyadenylated 99.5 3E-14 1E-18 102.9 8.7 63 212-282 19-82 (97)
324 1nu4_A U1A RNA binding domain; 99.5 5.7E-15 1.9E-19 106.5 4.8 67 213-282 6-76 (97)
325 1wf1_A RNA-binding protein RAL 99.5 2.3E-14 8E-19 105.9 8.2 61 214-282 26-87 (110)
326 1fje_B Nucleolin RBD12, protei 99.5 1.4E-14 4.7E-19 115.7 7.4 78 110-192 97-174 (175)
327 2kvi_A Nuclear polyadenylated 99.5 3.1E-14 1.1E-18 102.5 8.6 62 213-282 8-70 (96)
328 1whx_A Hypothetical protein ri 99.5 1.7E-14 5.9E-19 106.8 7.1 62 215-282 10-71 (111)
329 2dgt_A RNA-binding protein 30; 99.5 4.4E-14 1.5E-18 100.9 9.0 62 213-282 8-69 (92)
330 1x4g_A Nucleolysin TIAR; struc 99.5 2.4E-14 8.3E-19 105.6 7.7 64 213-282 23-86 (109)
331 2cpd_A Apobec-1 stimulating pr 99.5 8E-14 2.7E-18 100.9 10.0 63 212-282 12-76 (99)
332 2hvz_A Splicing factor, argini 99.5 1.3E-14 4.4E-19 105.5 5.7 62 216-282 1-62 (101)
333 3u1l_A PRE-mRNA-splicing facto 99.5 2.7E-14 9.2E-19 119.2 8.4 79 109-193 131-230 (240)
334 2dnp_A RNA-binding protein 14; 99.5 3.8E-14 1.3E-18 100.8 7.8 62 213-282 7-68 (90)
335 2dgu_A Heterogeneous nuclear r 99.5 4.5E-14 1.5E-18 103.0 7.9 62 213-282 9-70 (103)
336 3zzy_A Polypyrimidine tract-bi 99.5 6.7E-14 2.3E-18 105.7 8.6 62 216-282 29-91 (130)
337 3egn_A RNA-binding protein 40; 99.5 9E-15 3.1E-19 113.3 3.7 70 213-282 43-117 (143)
338 1fjc_A Nucleolin RBD2, protein 99.5 1.7E-14 6E-19 103.8 4.8 64 214-282 15-78 (96)
339 3d2w_A TAR DNA-binding protein 99.5 6.1E-14 2.1E-18 99.6 7.3 55 213-272 9-63 (89)
340 3v4m_A Splicing factor U2AF 65 99.5 7E-14 2.4E-18 102.3 7.8 81 110-190 3-95 (105)
341 1sjr_A Polypyrimidine tract-bi 99.5 6.8E-14 2.3E-18 109.7 8.0 64 215-282 46-109 (164)
342 1jmt_A Splicing factor U2AF 35 99.5 1.3E-14 4.3E-19 106.2 3.6 72 117-189 20-103 (104)
343 2e5g_A U6 snRNA-specific termi 99.5 1.4E-13 4.9E-18 98.6 9.1 63 214-282 7-69 (94)
344 3pgw_A U1-A; protein-RNA compl 99.5 1.3E-13 4.6E-18 118.5 10.6 76 110-190 205-281 (282)
345 2pe8_A Splicing factor 45; RRM 99.5 1.4E-13 4.7E-18 100.7 9.0 70 213-282 6-81 (105)
346 1wg1_A KIAA1579 protein, homol 99.5 7E-14 2.4E-18 99.0 7.2 62 214-282 4-65 (88)
347 2e5i_A Heterogeneous nuclear r 99.5 2.7E-13 9.2E-18 101.9 10.8 61 216-282 26-87 (124)
348 2dit_A HIV TAT specific factor 99.5 3.1E-13 1.1E-17 100.1 10.4 81 108-192 11-102 (112)
349 2e44_A Insulin-like growth fac 99.5 9.6E-14 3.3E-18 99.8 7.3 65 214-282 14-79 (96)
350 1x5p_A Negative elongation fac 99.5 3E-13 1E-17 97.5 9.9 62 213-282 13-74 (97)
351 2voo_A Lupus LA protein; RNA-b 99.5 2.8E-13 9.7E-18 110.1 11.0 108 163-279 63-172 (193)
352 2cqh_A IGF-II mRNA-binding pro 99.5 6.1E-14 2.1E-18 100.3 6.1 62 213-281 6-69 (93)
353 1qm9_A Polypyrimidine tract-bi 99.5 1.5E-13 5.2E-18 111.9 8.9 77 110-191 118-196 (198)
354 2hzc_A Splicing factor U2AF 65 99.5 8.3E-14 2.8E-18 98.2 6.2 62 214-282 5-77 (87)
355 3ue2_A Poly(U)-binding-splicin 99.5 2.1E-13 7.1E-18 101.8 8.6 80 111-190 19-107 (118)
356 3tyt_A Heterogeneous nuclear r 99.5 1.4E-13 4.7E-18 113.1 8.3 78 109-188 120-203 (205)
357 2adc_A Polypyrimidine tract-bi 99.4 2.8E-13 9.6E-18 113.1 10.0 78 109-191 148-227 (229)
358 3sde_A Paraspeckle component 1 99.4 4.3E-13 1.5E-17 114.2 10.8 83 109-192 93-179 (261)
359 2diu_A KIAA0430 protein; struc 99.4 3.2E-13 1.1E-17 95.1 8.0 60 214-283 7-72 (96)
360 2bz2_A Negative elongation fac 99.4 8E-13 2.7E-17 99.3 8.5 62 213-282 37-98 (121)
361 1wf0_A TDP-43, TAR DNA-binding 99.4 3.7E-13 1.3E-17 95.2 5.2 56 214-274 4-59 (88)
362 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.3E-11 4.3E-16 89.2 12.2 76 112-194 10-92 (100)
363 3v4m_A Splicing factor U2AF 65 99.4 1.6E-12 5.4E-17 95.1 7.2 69 214-282 4-84 (105)
364 3tht_A Alkylated DNA repair pr 99.3 2.1E-12 7E-17 113.4 7.4 65 212-282 15-81 (345)
365 3u1l_A PRE-mRNA-splicing facto 99.3 3E-12 1E-16 106.8 7.8 64 213-282 132-204 (240)
366 2dit_A HIV TAT specific factor 99.3 1.1E-11 3.7E-16 91.8 10.0 66 213-282 13-89 (112)
367 3tht_A Alkylated DNA repair pr 99.3 4.8E-12 1.7E-16 111.0 9.0 77 107-189 13-96 (345)
368 3ue2_A Poly(U)-binding-splicin 99.3 4E-12 1.4E-16 94.8 7.1 69 214-282 19-96 (118)
369 1jmt_A Splicing factor U2AF 35 99.3 9.9E-13 3.4E-17 96.0 2.6 62 220-282 20-93 (104)
370 3s6e_A RNA-binding protein 39; 99.3 1.6E-11 5.4E-16 91.0 8.2 77 110-190 5-91 (114)
371 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.3E-10 4.5E-15 83.8 9.6 51 225-280 27-77 (100)
372 3s6e_A RNA-binding protein 39; 99.1 2.2E-10 7.6E-15 84.7 7.9 65 214-282 6-80 (114)
373 1owx_A Lupus LA protein, SS-B, 99.0 6.3E-10 2.2E-14 82.6 7.6 76 109-190 15-94 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.0 8.3E-10 2.8E-14 77.0 7.3 73 109-190 4-84 (91)
375 1owx_A Lupus LA protein, SS-B, 99.0 1.1E-09 3.6E-14 81.3 7.7 61 212-278 15-77 (121)
376 3dxb_A Thioredoxin N-terminall 98.9 3.7E-09 1.3E-13 87.5 8.7 67 124-190 141-211 (222)
377 1ufw_A Synaptojanin 2; RNP dom 98.8 3.9E-09 1.3E-13 73.9 5.4 74 108-190 11-93 (95)
378 3dxb_A Thioredoxin N-terminall 98.6 5.1E-08 1.7E-12 80.6 6.8 56 227-282 141-200 (222)
379 2dnr_A Synaptojanin-1; RRM dom 98.6 1E-07 3.5E-12 66.4 6.2 62 212-282 4-73 (91)
380 2l9w_A U4/U6 snRNA-associated- 98.5 4.3E-07 1.5E-11 64.9 8.5 73 110-188 19-96 (117)
381 1ufw_A Synaptojanin 2; RNP dom 98.4 3.8E-07 1.3E-11 63.9 5.2 63 211-282 11-82 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.0 1.9E-05 6.4E-10 56.5 7.8 63 214-282 20-87 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.9 0.00018 6.1E-09 50.9 10.7 89 110-228 6-99 (104)
384 1uw4_A UPF3X; nonsense mediate 97.7 0.00015 5E-09 50.7 7.5 68 216-283 2-71 (91)
385 1uw4_A UPF3X; nonsense mediate 97.4 0.0005 1.7E-08 47.9 7.3 68 113-180 2-71 (91)
386 1wey_A Calcipressin 1; structu 97.2 0.002 6.8E-08 45.7 8.4 74 111-190 4-82 (104)
387 1whv_A Poly(A)-specific ribonu 97.1 0.0038 1.3E-07 43.6 8.4 53 216-277 17-69 (100)
388 2dhx_A Poly (ADP-ribose) polym 97.0 0.002 6.9E-08 45.5 6.9 55 214-276 7-66 (104)
389 1wwh_A Nucleoporin 35, nucleop 96.9 0.0024 8.1E-08 46.6 6.6 61 214-282 23-83 (119)
390 2l08_A Regulator of nonsense t 96.9 0.0011 3.8E-08 46.5 4.5 69 215-283 9-79 (97)
391 3ctr_A Poly(A)-specific ribonu 96.7 0.0023 7.7E-08 44.9 4.7 54 216-278 7-60 (101)
392 1whv_A Poly(A)-specific ribonu 96.6 0.01 3.4E-07 41.5 7.6 55 111-174 15-69 (100)
393 1wey_A Calcipressin 1; structu 96.6 0.0042 1.4E-07 44.1 5.5 64 214-283 4-72 (104)
394 1wwh_A Nucleoporin 35, nucleop 96.3 0.021 7.1E-07 41.6 7.8 69 112-188 24-93 (119)
395 2l08_A Regulator of nonsense t 96.2 0.0027 9.2E-08 44.6 2.7 69 112-180 9-79 (97)
396 3pq1_A Poly(A) RNA polymerase; 95.9 0.0048 1.7E-07 55.9 3.6 57 111-173 52-108 (464)
397 3ctr_A Poly(A)-specific ribonu 95.8 0.012 4.3E-07 41.2 4.7 54 113-175 7-60 (101)
398 3pq1_A Poly(A) RNA polymerase; 95.1 0.013 4.5E-07 53.1 3.7 54 216-275 54-107 (464)
399 3p3d_A Nucleoporin 53; structu 95.0 0.015 5.2E-07 43.0 3.1 66 215-282 7-86 (132)
400 3p3d_A Nucleoporin 53; structu 93.1 0.1 3.6E-06 38.5 4.3 76 112-189 7-96 (132)
401 3d45_A Poly(A)-specific ribonu 87.4 1.8 6E-05 39.8 8.0 54 216-278 441-494 (507)
402 3d45_A Poly(A)-specific ribonu 76.7 7 0.00024 35.7 7.6 55 112-175 440-494 (507)
403 4eyt_A Telomerase associated p 73.3 19 0.00063 24.4 7.9 56 214-277 11-66 (129)
404 2g0c_A ATP-dependent RNA helic 48.6 37 0.0012 21.7 5.0 67 114-189 2-74 (76)
405 4e8u_A Putative uncharacterize 44.4 53 0.0018 25.2 5.9 56 114-172 14-81 (172)
406 3bbo_T Ribosomal protein L21; 34.0 8.6 0.00029 31.4 0.0 20 1-20 1-21 (257)
407 4e8u_A Putative uncharacterize 33.3 92 0.0032 23.8 5.7 47 217-266 14-71 (172)
408 3lpe_A Putative transcription 31.8 29 0.001 23.5 2.5 26 256-281 49-74 (92)
409 3h7h_B Transcription elongatio 23.7 71 0.0024 22.3 3.3 34 241-279 40-73 (106)
410 3mfb_A Uncharacterized protein 22.2 96 0.0033 23.3 4.0 35 227-261 3-40 (157)
411 2i9x_A Putative septation prot 21.7 97 0.0033 20.8 3.5 26 241-266 5-30 (87)
412 3fut_A Dimethyladenosine trans 21.5 74 0.0025 26.2 3.6 32 113-145 111-142 (271)
No 1
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=5.2e-34 Score=227.29 Aligned_cols=155 Identities=26% Similarity=0.505 Sum_probs=144.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
+.++|||+|||+++++++|+++|+.||.|..+.++++..+|+++|||||+|.+.++|.+|++.++|..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35799999999999999999999999999999999999899999999999999999999999999999999999999876
Q ss_pred CCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHH
Q 023381 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (283)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A 270 (283)
.... ....++|||+|||..+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|
T Consensus 81 ~~~~-----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 81 PSSA-----------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCCG-----------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCcc-----------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 4321 12357899999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHcCCccc
Q 023381 271 QSALDAMNGVVR 282 (283)
Q Consensus 271 ~~Al~~lnG~~~ 282 (283)
.+|++.|||..+
T Consensus 144 ~~A~~~l~g~~~ 155 (167)
T 1fxl_A 144 EEAIKGLNGQKP 155 (167)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHhcCCcc
Confidence 999999999865
No 2
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=5e-34 Score=227.89 Aligned_cols=155 Identities=26% Similarity=0.465 Sum_probs=144.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
+.++|||+|||+++++++|+++|+.||.|..+.++++..+|+++|||||+|.+.++|.+|++.++|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred CCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHH
Q 023381 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (283)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A 270 (283)
.... ....++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|
T Consensus 82 ~~~~-----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 144 (168)
T 1b7f_A 82 PGGE-----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 144 (168)
T ss_dssp CCSS-----------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCcc-----------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHH
Confidence 4322 12457899999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHcCCccc
Q 023381 271 QSALDAMNGVVR 282 (283)
Q Consensus 271 ~~Al~~lnG~~~ 282 (283)
.+|++.|||..+
T Consensus 145 ~~A~~~l~g~~~ 156 (168)
T 1b7f_A 145 QEAISALNNVIP 156 (168)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHhcCCEe
Confidence 999999999865
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.3e-34 Score=239.41 Aligned_cols=157 Identities=31% Similarity=0.496 Sum_probs=140.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++|+++|+++|++||.|..|+|++|..+|+++|||||+|.+.++|.+|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHH
Q 023381 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (283)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~ 268 (283)
+....... ....++|||+|||+.+++++|+++|+.||.|..++|+.+. +.++|||||+|.+.+
T Consensus 92 ~~~~~~~~---------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 92 SQRDPSLR---------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 154 (213)
T ss_dssp CCCCTHHH---------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHH
T ss_pred cccccccc---------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHH
Confidence 75332111 1134689999999999999999999999999999999885 457999999999999
Q ss_pred HHHHHHHHcCCccc
Q 023381 269 DLQSALDAMNGVVR 282 (283)
Q Consensus 269 ~A~~Al~~lnG~~~ 282 (283)
+|.+|++.|||..+
T Consensus 155 ~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 155 AAERAIEKMNGMLL 168 (213)
T ss_dssp HHHHHHHHHTTCEE
T ss_pred HHHHHHHHhCCCEE
Confidence 99999999999864
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-34 Score=225.47 Aligned_cols=154 Identities=32% Similarity=0.584 Sum_probs=141.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccCC
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~~ 192 (283)
++|||+|||+++++++|+++|+.||.|..|.++++. +++++|||||+|.+.++|.+|++.++|..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999887 5889999999999999999999999999999999999997643
Q ss_pred CCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHH
Q 023381 193 RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272 (283)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~ 272 (283)
... ...+.++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+
T Consensus 80 ~~~---------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 80 QQS---------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp CCC---------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCC---------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 321 12356789999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHcCCccc
Q 023381 273 ALDAMNGVVR 282 (283)
Q Consensus 273 Al~~lnG~~~ 282 (283)
|+..|||..+
T Consensus 145 A~~~l~g~~~ 154 (166)
T 3md3_A 145 AMDSMQGQDL 154 (166)
T ss_dssp HHHHHTTCEE
T ss_pred HHHHhCCCcc
Confidence 9999999764
No 5
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=4.9e-33 Score=223.45 Aligned_cols=155 Identities=24% Similarity=0.391 Sum_probs=139.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCC--CceeEEEEEECCHHHHHHHHHhhCCCccC---CceeE
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD--RSRGFGFVTMGSVEEAKEAIRLFDGSQIG---GRTVK 185 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~i~---gr~l~ 185 (283)
+.++|||+|||+++++++|+++|++||.|..|+++++..++ +++|||||+|.+.++|.+|++.++|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999999776 89999999999999999999999998876 67788
Q ss_pred EecccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeC
Q 023381 186 VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265 (283)
Q Consensus 186 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~ 265 (283)
+.++...... ....++|||+|||+.+++++|+++|++||.|..++++.++ +|.++|||||+|.
T Consensus 82 ~~~~~~~~~~----------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~ 144 (175)
T 3nmr_A 82 MKPADSEKNN----------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFT 144 (175)
T ss_dssp EEECGGGCCS----------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEES
T ss_pred Eccccccccc----------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEEC
Confidence 8776533221 1245689999999999999999999999999999999986 6999999999999
Q ss_pred CHHHHHHHHHHcCCccc
Q 023381 266 TAEDLQSALDAMNGVVR 282 (283)
Q Consensus 266 ~~~~A~~Al~~lnG~~~ 282 (283)
+.++|.+|++.|||..+
T Consensus 145 ~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp SHHHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHHhcCCcc
Confidence 99999999999999754
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.7e-33 Score=228.44 Aligned_cols=160 Identities=28% Similarity=0.476 Sum_probs=139.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++++++|+++|+.||.|..|.++++..+|+++|||||+|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 44678999999999999999999999999999999999998999999999999999999999985 99999999999999
Q ss_pred ccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHH
Q 023381 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (283)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~ 268 (283)
+........ .......++|||+|||+.+++++|+++|+.||.|..++++.++.+|.++|||||+|.+.+
T Consensus 89 ~~~~~~~~~-----------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 157 (196)
T 1l3k_A 89 AVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157 (196)
T ss_dssp CCC----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred ccCcccccc-----------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHH
Confidence 764432211 112235589999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHHcCCcc
Q 023381 269 DLQSALDAMNGVV 281 (283)
Q Consensus 269 ~A~~Al~~lnG~~ 281 (283)
+|.+|+.. +|..
T Consensus 158 ~A~~A~~~-~~~~ 169 (196)
T 1l3k_A 158 SVDKIVIQ-KYHT 169 (196)
T ss_dssp HHHHHHHC-SCCE
T ss_pred HHHHHHHh-CCcE
Confidence 99999985 5543
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2e-33 Score=233.52 Aligned_cols=166 Identities=25% Similarity=0.460 Sum_probs=142.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
+.++|||+|||+++++++|+++|+.||.|..|.++++..+|+++|||||+|.+.++|.+|++.++|..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45699999999999999999999999999999999999899999999999999999999999999999999999998865
Q ss_pred CCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHH
Q 023381 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (283)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A 270 (283)
......... ..........++|||+|||+.+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|
T Consensus 107 ~~~~~~~~~------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 107 NIGQAQPII------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSS 180 (216)
T ss_dssp CCGGGHHHH------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Cccccchhh------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 332110000 00000123457999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHcCCccc
Q 023381 271 QSALDAMNGVVR 282 (283)
Q Consensus 271 ~~Al~~lnG~~~ 282 (283)
.+|++.|||..+
T Consensus 181 ~~A~~~l~g~~~ 192 (216)
T 2qfj_A 181 QDAVSSMNLFDL 192 (216)
T ss_dssp HHHHHHHTTCBC
T ss_pred HHHHHHccCCEe
Confidence 999999999764
No 8
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=3e-32 Score=225.08 Aligned_cols=166 Identities=16% Similarity=0.155 Sum_probs=136.2
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 110 DEAARLYVGNLP-YSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 110 ~~~~~l~v~nLp-~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
.+..+|||+||| +.+++++|+++|+.||.|.+|+++++. +|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 899999999999999999999998653 79999999999999999999999999999999999
Q ss_pred ccCCCCCCccC----CCCc---------c-c------CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCc--eEEE
Q 023381 189 PEVPRGGERAA----MGPK---------L-Q------NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL--LSAK 246 (283)
Q Consensus 189 a~~~~~~~~~~----~~~~---------~-~------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i--~~~~ 246 (283)
+..+....... .... . . ........+.++|||+|||+.+++++|+++|++||.| ..++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 86433211000 0000 0 0 0011123456789999999999999999999999999 8899
Q ss_pred EeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 247 VIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 247 i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
++.+. |..+|+|||+|.+.++|.+|+..|||..+
T Consensus 157 ~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~ 190 (205)
T 3tyt_A 157 VFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQM 190 (205)
T ss_dssp ECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred EEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCc
Confidence 88765 56679999999999999999999999754
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=3.5e-33 Score=222.83 Aligned_cols=152 Identities=26% Similarity=0.517 Sum_probs=137.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
+.++|||+|||+++++++|+++|+.||.|..|.++++..+|+++|||||+|.+.++|.+|++ ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 56899999999999999999999999999999999998899999999999999999999998 4678999999998765
Q ss_pred CCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHH
Q 023381 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (283)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A 270 (283)
.... ....++|||+|||+.+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|
T Consensus 80 ~~~~-----------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 142 (167)
T 2cjk_A 80 PRDE-----------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 142 (167)
T ss_dssp CHHH-----------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHH
T ss_pred chhh-----------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 3211 12346899999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHcCCccc
Q 023381 271 QSALDAMNGVVR 282 (283)
Q Consensus 271 ~~Al~~lnG~~~ 282 (283)
.+|++ +||..+
T Consensus 143 ~~A~~-~~~~~~ 153 (167)
T 2cjk_A 143 DRVCQ-NKFIDF 153 (167)
T ss_dssp HHHHH-CSEECS
T ss_pred HHHHh-CCCEEe
Confidence 99998 787654
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=1.9e-31 Score=213.76 Aligned_cols=149 Identities=26% Similarity=0.514 Sum_probs=132.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc----C-------CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEA----G-------TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~----G-------~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~ 178 (283)
++.++|||+|||+++++++|+++|++| | .|..+.+. +++|||||+|.+.++|.+|+ .++|..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 356899999999999999999999999 6 56666553 45899999999999999999 799999
Q ss_pred cCCceeEEecccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCcc
Q 023381 179 IGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRG 258 (283)
Q Consensus 179 i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg 258 (283)
+.|+.|.|.++..... ....++|||+|||+.+++++|+++|++||.|..++++.++.+|.++|
T Consensus 75 ~~g~~i~v~~~~~~~~-----------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 137 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQP-----------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 137 (172)
T ss_dssp ETTEECEEECCSSCCC-----------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEE
T ss_pred ecCceeeecCCcccCC-----------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcce
Confidence 9999999998653321 12357899999999999999999999999999999999988999999
Q ss_pred EEEEEeCCHHHHHHHHHHcCCccc
Q 023381 259 FGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 259 ~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
||||+|.+.++|.+|++.|||..+
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~ 161 (172)
T 2g4b_A 138 YAFCEYVDINVTDQAIAGLNGMQL 161 (172)
T ss_dssp EEEEEESSTTHHHHHHHHHTTCEE
T ss_pred EEEEEeCCHHHHHHHHHHcCCCEE
Confidence 999999999999999999999764
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=8.4e-31 Score=214.74 Aligned_cols=166 Identities=25% Similarity=0.438 Sum_probs=136.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcC-----------CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAG-----------TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G-----------~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~ 178 (283)
...++|||+|||+++++++|+++|+.|| .|..+.+ ++++|||||+|.+.++|.+|+ .++|..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 3578999999999999999999999995 4444444 566899999999999999999 799999
Q ss_pred cCCceeEEecccCCCCCCccCCCCcc---cCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCC
Q 023381 179 IGGRTVKVNFPEVPRGGERAAMGPKL---QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 255 (283)
Q Consensus 179 i~gr~l~v~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~ 255 (283)
+.|+.|.|.++............... ...........++|||+|||+.+++++|+++|++||.|..+++..++.+|.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~ 154 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 154 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC
Confidence 99999999998754322211111100 011122235678999999999999999999999999999999999988999
Q ss_pred CccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 256 SRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 256 ~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
++|||||+|.+.++|.+|++.|||..+
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~ 181 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQL 181 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEE
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 999999999999999999999999764
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.6e-30 Score=225.21 Aligned_cols=159 Identities=23% Similarity=0.329 Sum_probs=144.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
....++|||+|||+++++++|+++|+.||.|..+.++++..+|+++|||||+|.+.++|.+|++.++|..++|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCC-CHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCH
Q 023381 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL-TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (283)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~ 267 (283)
+....... .....++|||+|||+.+ ++++|+++|+.||.|..++++.++ +|.++|+|||+|.+.
T Consensus 172 a~~~~~~~--------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~ 236 (284)
T 3smz_A 172 TDAGQLTP--------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETA 236 (284)
T ss_dssp CCGGGCCT--------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSH
T ss_pred CCCCCCCc--------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCH
Confidence 86432211 12356789999999995 999999999999999999999987 799999999999999
Q ss_pred HHHHHHHHHcCCccc
Q 023381 268 EDLQSALDAMNGVVR 282 (283)
Q Consensus 268 ~~A~~Al~~lnG~~~ 282 (283)
++|.+|+..|||..+
T Consensus 237 ~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 237 EMAEEAQQQADGLSL 251 (284)
T ss_dssp HHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhCCCcc
Confidence 999999999999864
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=5.1e-30 Score=221.76 Aligned_cols=167 Identities=19% Similarity=0.277 Sum_probs=136.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCce
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~----~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~ 183 (283)
+..+.++|||+|||+++++++|+ ++|+.||.|..|++.+ +|+++|||||+|.+.++|.+|++.+||..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34678899999999999999977 8999999999998875 6889999999999999999999999999999999
Q ss_pred eEEecccCCCCCCccCCCCc------------------------------------------------------------
Q 023381 184 VKVNFPEVPRGGERAAMGPK------------------------------------------------------------ 203 (283)
Q Consensus 184 l~v~~a~~~~~~~~~~~~~~------------------------------------------------------------ 203 (283)
|+|.++...........+..
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 99999864331000000000
Q ss_pred ---------------c-------------------cCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEee
Q 023381 204 ---------------L-------------------QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIF 249 (283)
Q Consensus 204 ---------------~-------------------~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~ 249 (283)
. .........+.++|||+|||..+++++|+++|++||.|..++++.
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 0 000001223567899999999999999999999999999999985
Q ss_pred cCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 250 ERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 250 ~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
++ +|||||+|.+.++|.+|++.|||..+
T Consensus 242 ~~-----~g~afV~f~~~~~A~~A~~~l~g~~~ 269 (282)
T 3pgw_A 242 GR-----HDIAFVEFDNEVQAGAARDALQGFKI 269 (282)
T ss_pred CC-----CcEEEEEeCCHHHHHHHHHHcCCcEe
Confidence 54 68999999999999999999999765
No 14
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1.1e-29 Score=213.38 Aligned_cols=164 Identities=16% Similarity=0.237 Sum_probs=135.9
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 109 SDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 109 ~~~~~~l~v~nLp~-~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
..+.++|||+|||+ ++++++|+++|+.||.|..|+++++. +|||||+|.+.++|.+|++.++|..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999998775 8999999999999999999999999999999999
Q ss_pred cccCCCCCCccCCC------------------CcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCC-CceEEEEe
Q 023381 188 FPEVPRGGERAAMG------------------PKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVI 248 (283)
Q Consensus 188 ~a~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~~~i~ 248 (283)
++............ ............+.++|||+|||..+++++|+++|++|| .|..++++
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 98754211111000 000001112234578999999999999999999999999 99999986
Q ss_pred ecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 249 ~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+ .+|||||+|.+.++|.+|++.|||..+
T Consensus 186 ~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~ 214 (229)
T 2adc_A 186 QK-----DRKMALIQMGSVEEAVQALIDLHNHDL 214 (229)
T ss_dssp SS-----STTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred EC-----CCcEEEEEECCHHHHHHHHHHHCCCcc
Confidence 53 378999999999999999999999764
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=3.7e-31 Score=212.88 Aligned_cols=153 Identities=23% Similarity=0.394 Sum_probs=132.6
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|..||.+.. .++++..+|+++|||||+|.+.++|.+|++ ++|..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4557889999999999999999999999998766 344555578999999999999999999995 99999999999999
Q ss_pred cccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCH
Q 023381 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (283)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~ 267 (283)
++...... .....++|||+|||+.+++++|+++|++||.|..+ ..+|.++|||||+|.+.
T Consensus 87 ~~~~~~~~---------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~ 146 (175)
T 1fje_B 87 KPKGRDSK---------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSE 146 (175)
T ss_dssp CCCCSSCS---------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSH
T ss_pred cCCCcccc---------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCH
Confidence 98754221 11245799999999999999999999999988765 45889999999999999
Q ss_pred HHHHHHHHHcCCccc
Q 023381 268 EDLQSALDAMNGVVR 282 (283)
Q Consensus 268 ~~A~~Al~~lnG~~~ 282 (283)
++|.+|++.|||..+
T Consensus 147 ~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 147 ADAEKNLEEKQGAEI 161 (175)
T ss_dssp HHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHhCCCEE
Confidence 999999999999764
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=3.7e-30 Score=220.44 Aligned_cols=142 Identities=27% Similarity=0.434 Sum_probs=131.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++|+++|+++|+.||.|..|.+.+ ++|||||+|.+.++|.+|+..++|..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 345667999999999999999999999999999999964 37999999999999999999999999999999999
Q ss_pred cccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCH
Q 023381 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (283)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~ 267 (283)
++. +..+|||+|||+.+++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.
T Consensus 92 ~a~-----------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~ 147 (261)
T 3sde_A 92 FAT-----------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAK 147 (261)
T ss_dssp ECC-----------------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSH
T ss_pred ecc-----------------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCH
Confidence 875 24689999999999999999999999999999999994 899999999999999
Q ss_pred HHHHHHHHHcCC
Q 023381 268 EDLQSALDAMNG 279 (283)
Q Consensus 268 ~~A~~Al~~lnG 279 (283)
++|.+|+..|||
T Consensus 148 ~~A~~A~~~l~~ 159 (261)
T 3sde_A 148 PPARKALERCGD 159 (261)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999944
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=9.8e-30 Score=208.72 Aligned_cols=161 Identities=16% Similarity=0.241 Sum_probs=134.1
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 112 AARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 112 ~~~l~v~nLp~-~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
.++|||+|||+ ++++++|+++|+.||.|..|.++++. +|||||+|.+.++|.+|++.++|..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998765 7999999999999999999999999999999999987
Q ss_pred CCCCCCccCC------------------CCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCC-CceEEEEeecC
Q 023381 191 VPRGGERAAM------------------GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFER 251 (283)
Q Consensus 191 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~~~i~~~~ 251 (283)
.......... .............+.++|||+|||..+++++|+++|++|| .|..++++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~ 157 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 157 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC
Confidence 5421111100 0000011112234578999999999999999999999999 99999987542
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 252 YTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 252 ~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+|+|||+|.+.++|.+|+..|||..+
T Consensus 158 -----~g~afV~f~~~~~A~~A~~~l~g~~~ 183 (198)
T 1qm9_A 158 -----RKMALIQMGSVEEAVQALIDLHNHDL 183 (198)
T ss_dssp -----SSCEEEECSSHHHHHHHHHHHTSSCC
T ss_pred -----CcEEEEEeCCHHHHHHHHHHhcCCcc
Confidence 79999999999999999999999764
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.9e-30 Score=223.58 Aligned_cols=161 Identities=20% Similarity=0.303 Sum_probs=134.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G-~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
...++|||+|||+++++++|+++|+.|| .|..|.++++.. |.++|||||+|.+.++|.+|++.++|..+.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4678999999999999999999999999 999999998874 88999999999999999999999999999999999999
Q ss_pred ccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHhccCCCceEEEEeecCC-CCCCccEEEEEeCC
Q 023381 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG-LTSQGLRDAFQGQPGLLSAKVIFERY-TGRSRGFGFVTFET 266 (283)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~~~i~~~~~-~g~~kg~afV~f~~ 266 (283)
+.+....... .......++|||+|||+. +++++|+++|+.||.|..++++.+.. +|.++|||||+|.+
T Consensus 194 a~~~~~~~~~----------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~ 263 (292)
T 2ghp_A 194 SNPLEKSKRT----------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFEN 263 (292)
T ss_dssp CCCC-------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESS
T ss_pred CCCCcccccc----------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCC
Confidence 8754432221 122345689999999999 99999999999999999999998876 59999999999999
Q ss_pred HHHHHHHHHHcCCccc
Q 023381 267 AEDLQSALDAMNGVVR 282 (283)
Q Consensus 267 ~~~A~~Al~~lnG~~~ 282 (283)
.++|.+|+ .|||..+
T Consensus 264 ~~~A~~A~-~l~g~~~ 278 (292)
T 2ghp_A 264 KDSAERAL-QMNRSLL 278 (292)
T ss_dssp HHHHHHHG-GGTTEEE
T ss_pred HHHHHHHH-HhcCCEE
Confidence 99999999 9999864
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=6.2e-30 Score=221.47 Aligned_cols=143 Identities=21% Similarity=0.356 Sum_probs=133.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.+.++|||+|||+++++++|+++|+.|| |..+.+ ++++|||||+|.+.++|.+|++.++|..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3668999999999999999999999999 888887 567899999999999999999999999999999999974
Q ss_pred cCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHH
Q 023381 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269 (283)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~ 269 (283)
. ...+|||+|||+.+++++|+++|+.||.|..++++.++.+|.++|||||+|.+.++
T Consensus 93 ~-----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 149 (284)
T 3smz_A 93 P-----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS 149 (284)
T ss_dssp C-----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred C-----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHH
Confidence 3 33689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccc
Q 023381 270 LQSALDAMNGVVR 282 (283)
Q Consensus 270 A~~Al~~lnG~~~ 282 (283)
|.+|+..|||..+
T Consensus 150 a~~A~~~l~~~~~ 162 (284)
T 3smz_A 150 AARAKSDLLGKPL 162 (284)
T ss_dssp HHHHHHHHTTCEE
T ss_pred HHHHHHHhCCCEe
Confidence 9999999999754
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2e-29 Score=219.10 Aligned_cols=149 Identities=19% Similarity=0.304 Sum_probs=127.1
Q ss_pred cccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeE
Q 023381 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (283)
Q Consensus 106 ~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~ 185 (283)
.....+.++|||+|||+++++++|+++|+.||.|..|.++++... ++|||||+|.+.++|.+|++ ++|..+.|+.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 344567899999999999999999999999999999999998733 58999999999999999996 899999999999
Q ss_pred EecccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCC-CceEEEEeecCCCCCCccEEEEEe
Q 023381 186 VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTF 264 (283)
Q Consensus 186 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~~~i~~~~~~g~~kg~afV~f 264 (283)
|.++ ..++|||+|||+.+++++|+++|+.|| .|..++++.++. |.++|||||+|
T Consensus 112 v~~~------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f 166 (292)
T 2ghp_A 112 VSHL------------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDV 166 (292)
T ss_dssp EEEC------------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEEC
T ss_pred EEEC------------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEE
Confidence 9874 257899999999999999999999999 999999998874 88999999999
Q ss_pred CCHHHHHHHHHHcCCccc
Q 023381 265 ETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 265 ~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|.+|+..|||..+
T Consensus 167 ~~~~~a~~A~~~l~g~~~ 184 (292)
T 2ghp_A 167 TSKEDARYCVEKLNGLKI 184 (292)
T ss_dssp SSHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHhCCCEe
Confidence 999999999999999764
No 21
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.90 E-value=2.1e-23 Score=190.24 Aligned_cols=167 Identities=22% Similarity=0.332 Sum_probs=113.4
Q ss_pred ccCCCCCcccCCCCCCCCCCCccCCCCCCcccccccccccccccccCCCCCcccCCCCCCCccchhhh----hh------
Q 023381 25 TQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEEE----EE------ 94 (283)
Q Consensus 25 t~~~p~~l~~~f~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------ 94 (283)
|++|||||+.||.|.||++|++|+...|..... ......+..|...+............+...+... +.
T Consensus 2 t~~lPp~L~~lF~p~pPl~~~~P~~~~p~~~~~-~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~ 80 (437)
T 3pgw_S 2 TQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHH-NQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQ 80 (437)
T ss_pred CCcCCccHHHhcCCCCCCcCCCCcccccccccC-CCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999998866532210 0000111111111111111110100000000000 00
Q ss_pred ----hhhhhhccCcccccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHH
Q 023381 95 ----EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (283)
Q Consensus 95 ----~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a 170 (283)
................+.++|||+|||+.+|+++|..+|..||.|..|.|+.+..+|+++|||||+|.+.++|.+|
T Consensus 81 ~~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 160 (437)
T 3pgw_S 81 EVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160 (437)
T ss_pred HHHHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHH
Confidence 0001111112223345678999999999999999999999999999999999988999999999999999999999
Q ss_pred HHhhCCCccCCceeEEecccCC
Q 023381 171 IRLFDGSQIGGRTVKVNFPEVP 192 (283)
Q Consensus 171 ~~~l~g~~i~gr~l~v~~a~~~ 192 (283)
+..|||..|.|+.|.|.++...
T Consensus 161 i~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 161 YKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred HHHcCCCEECCEEEEEEEeCCC
Confidence 9999999999999999998754
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1.4e-22 Score=151.86 Aligned_cols=109 Identities=26% Similarity=0.413 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccC
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~ 191 (283)
..+|||+|||+++++++|+++|++||.|..|+|+++. +.++|||||+|.+.++|.+|++.|+|..|+||.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999986 55899999999999999999999999999999999999875
Q ss_pred CCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHH
Q 023381 192 PRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231 (283)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~ 231 (283)
......... .......+|||+|||..+|++.
T Consensus 83 ~~~~~~~~~---------~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELG---------ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC-------------------------------------
T ss_pred ccccccccc---------cccCCCCceEeCCCCCCccccc
Confidence 433221111 1112345799999999998863
No 23
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=6.7e-22 Score=156.32 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=102.1
Q ss_pred EEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccCCCCCCccCCCCcccCCCCCCCCCCCeEEE
Q 023381 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYA 220 (283)
Q Consensus 141 ~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 220 (283)
.+.++++. .+++|||||+|.+.++|++|++.+++....+....+......... ................++|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTV----TEGSHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEE----ECCCCCSSCCCCCCBCCEEEE
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccc----cccccccccccCCCCCCEEEE
Confidence 35666675 468999999999999999999887765433333333322110000 000001111122345689999
Q ss_pred cCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 221 ~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+|||+.+++++|+++|+.||.|..++++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 137 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL 137 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999998999999999999999999999999999764
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=140.68 Aligned_cols=82 Identities=32% Similarity=0.571 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
...++|||+|||+++|+++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|++.|||..|+||.|+|.+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 023381 190 EV 191 (283)
Q Consensus 190 ~~ 191 (283)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 63
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=4.2e-20 Score=136.99 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.+.++|||+|||+++++++|+++|++||.|..|.|++|..+|+++|||||+|.+.++|++|++.|||..+.||.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 023381 190 EV 191 (283)
Q Consensus 190 ~~ 191 (283)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 63
No 26
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=2.4e-20 Score=146.15 Aligned_cols=125 Identities=19% Similarity=0.212 Sum_probs=100.7
Q ss_pred CCceeEEEEEECCHHHHHHHHHhh-CCCccCCceeEEecccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCH
Q 023381 151 DRSRGFGFVTMGSVEEAKEAIRLF-DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229 (283)
Q Consensus 151 ~~~~g~afv~f~~~~~a~~a~~~l-~g~~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te 229 (283)
.+.+|+++|+|.+.++|++|++.+ +|..++| .+.++++.......... ...............++|||+|||+.+++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS-HHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS-SSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc-ccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 467999999999999999999999 9999999 99999876321110000 00111122233456789999999999999
Q ss_pred HHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 230 ~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
++|+++|++||.|..++++.+ ++|||||+|.+.++|.+|+..|||..+
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~ 135 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTL 135 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCS
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 999999999999999999876 589999999999999999999999764
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=135.19 Aligned_cols=83 Identities=17% Similarity=0.341 Sum_probs=76.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhh-CCCccCCceeEEecc
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF-DGSQIGGRTVKVNFP 189 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G-~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~g~~i~gr~l~v~~a 189 (283)
+++|||+|||+++|+++|+++|++|| .|..|++++++.+|+++|||||+|.+.++|.+|++.+ ++..++||.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999876 466899999999998
Q ss_pred cCCCC
Q 023381 190 EVPRG 194 (283)
Q Consensus 190 ~~~~~ 194 (283)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 75543
No 28
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=5.3e-20 Score=131.53 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=72.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcC--CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G--~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
.+|||+|||+++++++|+++|++|| .|..+++++++.+|+++|||||+|.+.++|.+|++.+||..++||.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 023381 191 VPR 193 (283)
Q Consensus 191 ~~~ 193 (283)
++.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 29
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=127.84 Aligned_cols=82 Identities=30% Similarity=0.584 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.+.++|||+|||+++++++|+++|++||.|..+.++++..+|+++|||||+|.+.++|.+|++.++|..++|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cC
Q 023381 190 EV 191 (283)
Q Consensus 190 ~~ 191 (283)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 30
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=3e-20 Score=133.92 Aligned_cols=81 Identities=21% Similarity=0.458 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC--ceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCC----ccCCce
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT--VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS----QIGGRT 183 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~--i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~----~i~gr~ 183 (283)
..-.+|||+|||+++|+++|+++|++||. +..|++++|+.+|+++|||||+|.+.++|.+|++.+||. .|+||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 35679999999999999999999999995 679999999999999999999999999999999999997 489999
Q ss_pred eEEeccc
Q 023381 184 VKVNFPE 190 (283)
Q Consensus 184 l~v~~a~ 190 (283)
|.|.+|+
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999986
No 31
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.3e-19 Score=127.96 Aligned_cols=85 Identities=28% Similarity=0.544 Sum_probs=80.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.+.++|||+|||+++++++|+++|++||.|..|.+.++..+++++|||||+|.+.++|.+|++.+||..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 023381 190 EVPRG 194 (283)
Q Consensus 190 ~~~~~ 194 (283)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76544
No 32
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=7.9e-19 Score=131.16 Aligned_cols=89 Identities=27% Similarity=0.520 Sum_probs=82.5
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|||+++++++|+++|..||.|..|.++++..+++++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34457789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ecccCCCCC
Q 023381 187 NFPEVPRGG 195 (283)
Q Consensus 187 ~~a~~~~~~ 195 (283)
.++......
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 998865543
No 33
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=131.19 Aligned_cols=86 Identities=24% Similarity=0.367 Sum_probs=80.5
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|||+++++++|+++|+.||.|..|.++++..+|+++|||||+|.+.++|.+|++.++|..|+|+.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC
Q 023381 187 NFPEVP 192 (283)
Q Consensus 187 ~~a~~~ 192 (283)
.++..+
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 998754
No 34
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=3.4e-19 Score=125.15 Aligned_cols=80 Identities=28% Similarity=0.575 Sum_probs=76.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccCC
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~~ 192 (283)
.+|||+|||+++++++|+++|++||.|..+.++++..+|+++|||||+|.+.++|.+|++.++|..++|+.|.|.++..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999998743
No 35
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=2.2e-19 Score=126.73 Aligned_cols=82 Identities=32% Similarity=0.515 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++++++|+++|++||.|..+.++++..+++++|||||+|.+.++|.+|++.+||..++|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45778999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 023381 189 PE 190 (283)
Q Consensus 189 a~ 190 (283)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 36
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=128.75 Aligned_cols=86 Identities=29% Similarity=0.471 Sum_probs=80.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++++++|+++|+.||.|..|.++++..+++++|||||+|.+.++|.+|++.+||..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023381 189 PEVPRG 194 (283)
Q Consensus 189 a~~~~~ 194 (283)
+..+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 886544
No 37
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=2.6e-19 Score=129.41 Aligned_cols=83 Identities=25% Similarity=0.598 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
+.++|||+|||+++++++|+++|++||.|..|.++++..+|+++|||||+|.+.++|.+|++.++|..++|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred CCC
Q 023381 191 VPR 193 (283)
Q Consensus 191 ~~~ 193 (283)
.+.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 38
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.4e-19 Score=128.10 Aligned_cols=86 Identities=27% Similarity=0.533 Sum_probs=80.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|++||.|..|.++++..+++++|||||+|.+.++|.+|++ +++..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999 89999999999999
Q ss_pred cccCCCC
Q 023381 188 FPEVPRG 194 (283)
Q Consensus 188 ~a~~~~~ 194 (283)
++..+..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9875544
No 39
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=6.5e-19 Score=131.66 Aligned_cols=85 Identities=32% Similarity=0.507 Sum_probs=80.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.+.++|||+|||+++++++|+++|+.||.|..|.++++..+++++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 023381 190 EVPRG 194 (283)
Q Consensus 190 ~~~~~ 194 (283)
..+..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 75543
No 40
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=130.42 Aligned_cols=88 Identities=24% Similarity=0.386 Sum_probs=81.9
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|||+++++++|+++|++||.|..|.++++..+++++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 023381 187 NFPEVPRG 194 (283)
Q Consensus 187 ~~a~~~~~ 194 (283)
.++..+..
T Consensus 90 ~~a~~~~~ 97 (103)
T 2cq0_A 90 EWAKPSTN 97 (103)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99875543
No 41
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=130.10 Aligned_cols=101 Identities=25% Similarity=0.359 Sum_probs=84.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccCC
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~~ 192 (283)
++|||+|||+++++++|+++|++||.|..|.+.++ ++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 6899999999999999999999999999999999998865
Q ss_pred CCCCccCCCCcccCCCCCCCCCCCeEEEcCCCC
Q 023381 193 RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225 (283)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~ 225 (283)
........ .........+|||+||+.
T Consensus 76 ~~~~~~~~-------~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDR-------PPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCS-------CCCSCCCCSCCCSCCCCC
T ss_pred CCcccCCC-------CCccccCCCceecCCCCC
Confidence 53322111 111223467899999973
No 42
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=7.3e-19 Score=127.81 Aligned_cols=84 Identities=27% Similarity=0.472 Sum_probs=79.1
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE--------EEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCc
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS--------AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~--------i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~ 178 (283)
....+.++|||+|||+++++++|+++|++||.|.. +++++++.+|+++|||||+|.+.++|.+|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44567889999999999999999999999999999 9999999899999999999999999999999999999
Q ss_pred cCCceeEEeccc
Q 023381 179 IGGRTVKVNFPE 190 (283)
Q Consensus 179 i~gr~l~v~~a~ 190 (283)
+.|+.|+|.+|.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999863
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.1e-19 Score=128.87 Aligned_cols=87 Identities=33% Similarity=0.678 Sum_probs=81.3
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|++||.|..|.++++..+++++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34577899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 023381 188 FPEVPRG 194 (283)
Q Consensus 188 ~a~~~~~ 194 (283)
++.....
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9875543
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.2e-19 Score=127.75 Aligned_cols=85 Identities=27% Similarity=0.475 Sum_probs=79.6
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|++||.|..|.++.+. +|+++|||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cccCCC
Q 023381 188 FPEVPR 193 (283)
Q Consensus 188 ~a~~~~ 193 (283)
++..+.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 987543
No 45
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=130.64 Aligned_cols=85 Identities=29% Similarity=0.575 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++++++|+++|++||.|..|.+..+. +|+++|||||+|.+.++|.+|++.|+|..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023381 189 PEVPRG 194 (283)
Q Consensus 189 a~~~~~ 194 (283)
+..+..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 876543
No 46
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=130.28 Aligned_cols=87 Identities=31% Similarity=0.483 Sum_probs=81.4
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|++||.|..|.++++..+++++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 023381 188 FPEVPRG 194 (283)
Q Consensus 188 ~a~~~~~ 194 (283)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9885543
No 47
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.3e-19 Score=127.84 Aligned_cols=85 Identities=28% Similarity=0.499 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCC---CCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV---TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
.+.++|||+|||+++++++|+++|++||.|..|.+.++.. +++++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999886 5689999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 023381 187 NFPEVPRG 194 (283)
Q Consensus 187 ~~a~~~~~ 194 (283)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99875543
No 48
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8e-19 Score=128.93 Aligned_cols=88 Identities=32% Similarity=0.520 Sum_probs=81.7
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|||+++++++|+++|++||.|..|.++++..+++++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34457789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 023381 187 NFPEVPRG 194 (283)
Q Consensus 187 ~~a~~~~~ 194 (283)
.++.....
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99875543
No 49
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=128.07 Aligned_cols=85 Identities=21% Similarity=0.454 Sum_probs=80.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEE-EEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASA-EIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i-~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
.+.++|||+|||+++++++|+++|++||.|..+ +++++..+++++|||||+|.+.++|.+|++.++|..+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023381 189 PEVPRG 194 (283)
Q Consensus 189 a~~~~~ 194 (283)
+..+..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 875543
No 50
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-19 Score=127.16 Aligned_cols=84 Identities=39% Similarity=0.579 Sum_probs=79.4
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|||+++++++|+++|++||.|..|.++++..+++++|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eccc
Q 023381 187 NFPE 190 (283)
Q Consensus 187 ~~a~ 190 (283)
.++.
T Consensus 90 ~~a~ 93 (95)
T 2cqc_A 90 SGPS 93 (95)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9876
No 51
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=8.7e-19 Score=129.52 Aligned_cols=85 Identities=34% Similarity=0.609 Sum_probs=79.8
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+.+++++|+++|++||.|..|.++++..+|+++|||||+|.+.++|.+|++.++|..+.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cccCC
Q 023381 188 FPEVP 192 (283)
Q Consensus 188 ~a~~~ 192 (283)
++..+
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98643
No 52
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=1.6e-18 Score=127.29 Aligned_cols=85 Identities=24% Similarity=0.406 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCC---ceeE
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG---RTVK 185 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g---r~l~ 185 (283)
..+.++|||+|||+++++++|+++|++||.|..|.++++. +|+++|||||+|.+.++|.+|++.|||..+.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3467899999999999999999999999999999999998 89999999999999999999999999999998 9999
Q ss_pred EecccCCCC
Q 023381 186 VNFPEVPRG 194 (283)
Q Consensus 186 v~~a~~~~~ 194 (283)
|.++.....
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999886544
No 53
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=129.31 Aligned_cols=88 Identities=22% Similarity=0.411 Sum_probs=81.6
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhC------CCccC
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD------GSQIG 180 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~------g~~i~ 180 (283)
....+.++|||+|||+++++++|+++|..||.|..|.++++..+++++|||||+|.+.++|.+|++.++ |..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 344567899999999999999999999999999999999999899999999999999999999999999 99999
Q ss_pred CceeEEecccCCCC
Q 023381 181 GRTVKVNFPEVPRG 194 (283)
Q Consensus 181 gr~l~v~~a~~~~~ 194 (283)
|+.|.|.++..+..
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999875543
No 54
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=1.6e-19 Score=131.64 Aligned_cols=81 Identities=26% Similarity=0.441 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCC-ce
Q 023381 111 EAARLYVGNLPY------SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG-RT 183 (283)
Q Consensus 111 ~~~~l~v~nLp~------~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g-r~ 183 (283)
..++|||+|||+ ++++++|+++|++||.|..|+++++..+|+++|||||+|.+.++|.+|++.|||..+.| |.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eEEecccC
Q 023381 184 VKVNFPEV 191 (283)
Q Consensus 184 l~v~~a~~ 191 (283)
|.|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99998763
No 55
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=129.41 Aligned_cols=88 Identities=31% Similarity=0.459 Sum_probs=81.8
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|++||.|..|.++++..+++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34578899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 023381 188 FPEVPRGG 195 (283)
Q Consensus 188 ~a~~~~~~ 195 (283)
++..+...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 98765443
No 56
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=5.6e-19 Score=130.93 Aligned_cols=87 Identities=24% Similarity=0.365 Sum_probs=80.9
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|||+++++++|+++|+.||.|..|.++.+..+|+++|||||+|.+.++|.+|++.|+|..|+|+.|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ecccCCC
Q 023381 187 NFPEVPR 193 (283)
Q Consensus 187 ~~a~~~~ 193 (283)
.++..+.
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9987543
No 57
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=128.03 Aligned_cols=87 Identities=21% Similarity=0.448 Sum_probs=81.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEec-CCCCCceeEEEEEECCHHHHHHHHHhh-CCCccCCceeE
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD-RVTDRSRGFGFVTMGSVEEAKEAIRLF-DGSQIGGRTVK 185 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l-~g~~i~gr~l~ 185 (283)
...+.++|||+|||+.+++++|+++|+.||.|..|.++++ ..+++++|||||+|.+.++|.+|++.+ +|..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999998 788999999999999999999999999 99999999999
Q ss_pred EecccCCCC
Q 023381 186 VNFPEVPRG 194 (283)
Q Consensus 186 v~~a~~~~~ 194 (283)
|.++.....
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999886544
No 58
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=1.1e-18 Score=128.43 Aligned_cols=87 Identities=22% Similarity=0.397 Sum_probs=80.8
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCcc---CCcee
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI---GGRTV 184 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i---~gr~l 184 (283)
...+.++|||+|||+++++++|+++|++||.|..|+++++..+|+++|||||+|.+.++|.+|++.|+|..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999988 89999
Q ss_pred EEecccCCCC
Q 023381 185 KVNFPEVPRG 194 (283)
Q Consensus 185 ~v~~a~~~~~ 194 (283)
.|.++..+..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999876544
No 59
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=126.91 Aligned_cols=84 Identities=27% Similarity=0.498 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCce-EEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCce----
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA-SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT---- 183 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~-~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~---- 183 (283)
..+.++|||+|||+++++++|+++|++||.|. .+++++++.+++++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45778999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eEEecccCC
Q 023381 184 VKVNFPEVP 192 (283)
Q Consensus 184 l~v~~a~~~ 192 (283)
|+|.++...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998744
No 60
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=126.36 Aligned_cols=86 Identities=26% Similarity=0.438 Sum_probs=80.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHh-cCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCc-cCCceeE
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ-IGGRTVK 185 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~-~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~-i~gr~l~ 185 (283)
...+.++|||+|||+++++++|+++|+. ||.|..|.++++. +|+++|||||+|.+.++|.+|++.++|.. +.|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999999 99999999999999999999999999999 9999999
Q ss_pred EecccCCCC
Q 023381 186 VNFPEVPRG 194 (283)
Q Consensus 186 v~~a~~~~~ 194 (283)
|.++.....
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999875543
No 61
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=2.1e-19 Score=134.30 Aligned_cols=105 Identities=19% Similarity=0.308 Sum_probs=92.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+.+++++|+++|+.||.|..|.++++ +.++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999865 55699999999999999999999999999999999999
Q ss_pred ccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCC
Q 023381 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG 241 (283)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~ 241 (283)
+...... .+++...++++|.++|++||.
T Consensus 82 a~~~~~~-------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF-------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT-------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh-------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 8633221 456778889999999999984
No 62
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=8.7e-19 Score=133.66 Aligned_cols=87 Identities=39% Similarity=0.588 Sum_probs=81.1
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|||+++++++|+++|++||.|..|.++++..+|+++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ecccCCC
Q 023381 187 NFPEVPR 193 (283)
Q Consensus 187 ~~a~~~~ 193 (283)
.++..++
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9987543
No 63
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=126.52 Aligned_cols=85 Identities=29% Similarity=0.508 Sum_probs=79.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|++||.|..|.++.+ +++++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3457789999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 023381 188 FPEVPRG 194 (283)
Q Consensus 188 ~a~~~~~ 194 (283)
++..+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9886544
No 64
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.1e-18 Score=123.65 Aligned_cols=81 Identities=25% Similarity=0.527 Sum_probs=75.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|++||.|..+.++++..+|+++|||||+|.+.++|.+|++ +++..++|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34577899999999999999999999999999999999999899999999999999999999997 58889999999998
Q ss_pred cc
Q 023381 188 FP 189 (283)
Q Consensus 188 ~a 189 (283)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 65
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=3.2e-18 Score=132.21 Aligned_cols=86 Identities=31% Similarity=0.480 Sum_probs=80.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++++++|+++|+.||.|..|.++++..+|+++|||||+|.+.++|.+|++.++|..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023381 189 PEVPRG 194 (283)
Q Consensus 189 a~~~~~ 194 (283)
+.....
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 886543
No 66
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=1.3e-18 Score=123.84 Aligned_cols=80 Identities=28% Similarity=0.532 Sum_probs=76.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccC
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~ 191 (283)
.++|||+|||+++++++|+++|+.||.|..+.++++..+++++|||||+|.+.++|.+|+ .++|..+.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999889999999999999999999999 7999999999999999875
Q ss_pred C
Q 023381 192 P 192 (283)
Q Consensus 192 ~ 192 (283)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 67
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2e-18 Score=126.35 Aligned_cols=86 Identities=29% Similarity=0.617 Sum_probs=79.2
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|||+++++++|+++|.+|| |..|+++++..+++++|||||+|.+.++|.+|+ .++|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3345678999999999999999999999997 999999999999999999999999999999999 79999999999999
Q ss_pred ecccCCCC
Q 023381 187 NFPEVPRG 194 (283)
Q Consensus 187 ~~a~~~~~ 194 (283)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99875543
No 68
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.4e-19 Score=128.36 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.+.++|||+|||+++|+++|+++|++||.|..|+++++.. |+++|||||+|.+.++|.+|+. ++|..++|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3467999999999999999999999999999999999986 9999999999999999999999 8999999999999986
Q ss_pred c
Q 023381 190 E 190 (283)
Q Consensus 190 ~ 190 (283)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 5
No 69
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=9.6e-19 Score=124.17 Aligned_cols=83 Identities=23% Similarity=0.516 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCC-ceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR-SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
..++|||+|||+++++++|+++|++||.|..+.++.+..++. ++|||||+|.+.++|.+|++.+||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999987766 8999999999999999999999999999999999998
Q ss_pred cCCC
Q 023381 190 EVPR 193 (283)
Q Consensus 190 ~~~~ 193 (283)
..+.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 70
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=7.3e-19 Score=126.46 Aligned_cols=82 Identities=28% Similarity=0.528 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++++++|+++|++||.|..|.++++..+++++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45678999999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred cc
Q 023381 189 PE 190 (283)
Q Consensus 189 a~ 190 (283)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 71
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=129.20 Aligned_cols=87 Identities=28% Similarity=0.429 Sum_probs=80.8
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCce--------EEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCcc
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA--------SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI 179 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~--------~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i 179 (283)
...+.++|||+|||+++++++|+++|++||.|. .|+++.++.+|+++|||||+|.+.++|.+|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCceeEEecccCCCC
Q 023381 180 GGRTVKVNFPEVPRG 194 (283)
Q Consensus 180 ~gr~l~v~~a~~~~~ 194 (283)
.|+.|.|.++..+..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999876544
No 72
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=136.75 Aligned_cols=80 Identities=24% Similarity=0.429 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC--CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G--~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..++|||+|||+++++++|+++|+.|| .|..|++++|..+|+++|||||+|.+.++|.+|++.|||..|+||.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 023381 189 PE 190 (283)
Q Consensus 189 a~ 190 (283)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 76
No 73
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=124.73 Aligned_cols=81 Identities=31% Similarity=0.537 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+.+++++|+++|++||.|..|.+.++.. ++++|||||+|.+.++|.+|++.++|..+.|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34568999999999999999999999999999999999984 99999999999999999999999999999999999998
Q ss_pred cc
Q 023381 189 PE 190 (283)
Q Consensus 189 a~ 190 (283)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 74
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=8.7e-19 Score=120.68 Aligned_cols=75 Identities=28% Similarity=0.527 Sum_probs=72.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 114 ~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
+|||+|||+++++++|+++|++||.|..+.+.++..+|+++|||||+|.+.++|++|++ ++|..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999998 8999999999999875
No 75
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=126.62 Aligned_cols=83 Identities=34% Similarity=0.679 Sum_probs=78.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
+.++|||+|||+.+++++|+++|+.||.|..+.++++..+|+++|||||+|.+.++|.+|++.++|..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCC
Q 023381 191 VPR 193 (283)
Q Consensus 191 ~~~ 193 (283)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 543
No 76
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.1e-18 Score=126.97 Aligned_cols=85 Identities=34% Similarity=0.561 Sum_probs=79.2
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|||+++++++|+++|++||.|..|+++++..+++++|||||+|.+.++|.+|++.+++ .|.|+.|.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3345678999999999999999999999999999999999998999999999999999999999999998 899999999
Q ss_pred ecccCC
Q 023381 187 NFPEVP 192 (283)
Q Consensus 187 ~~a~~~ 192 (283)
.++...
T Consensus 91 ~~a~~~ 96 (116)
T 2cqd_A 91 NLAYLG 96 (116)
T ss_dssp EESTTT
T ss_pred EEcccC
Confidence 998754
No 77
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=126.19 Aligned_cols=70 Identities=30% Similarity=0.461 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.+|||+|||+.+++++|+++|++||.|..+++++++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 86 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE
Confidence 3457899999999999999999999999999999999999999999999999999999999999999864
No 78
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=126.49 Aligned_cols=85 Identities=19% Similarity=0.499 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC-CCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT-DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
..+.++|||+|||+++++++|+++|+.|| |..|.++++..+ |+++|||||+|.+.++|.+|+ .++|..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45678999999999999999999999999 999999999887 999999999999999999999 899999999999999
Q ss_pred cccCCCCC
Q 023381 188 FPEVPRGG 195 (283)
Q Consensus 188 ~a~~~~~~ 195 (283)
++..+...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 98865443
No 79
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=3.3e-18 Score=126.06 Aligned_cols=82 Identities=28% Similarity=0.544 Sum_probs=78.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+.+++++|+++|..||.|..|.++++. +|+++|||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44577899999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccc
Q 023381 188 FPE 190 (283)
Q Consensus 188 ~a~ 190 (283)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 80
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=9e-19 Score=134.00 Aligned_cols=84 Identities=23% Similarity=0.457 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE--EEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCC----ccCCc
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS--AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS----QIGGR 182 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~--i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~----~i~gr 182 (283)
..+.++|||+|||+++++++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|+|. .++||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346789999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred eeEEecccCCC
Q 023381 183 TVKVNFPEVPR 193 (283)
Q Consensus 183 ~l~v~~a~~~~ 193 (283)
.|.|.++....
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999987643
No 81
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.9e-18 Score=123.48 Aligned_cols=86 Identities=26% Similarity=0.486 Sum_probs=78.0
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|||+++++++|+++|++||.|..|.++++. +.++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 344577899999999999999999999999999999999885 336899999999999999999999999999999999
Q ss_pred ecccCCCC
Q 023381 187 NFPEVPRG 194 (283)
Q Consensus 187 ~~a~~~~~ 194 (283)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99886543
No 82
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=124.70 Aligned_cols=85 Identities=35% Similarity=0.521 Sum_probs=79.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|.+||.|..|.++++. +++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999998 69999999999999999999999999999999999999
Q ss_pred cccCCC
Q 023381 188 FPEVPR 193 (283)
Q Consensus 188 ~a~~~~ 193 (283)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 987543
No 83
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=2.6e-18 Score=130.43 Aligned_cols=88 Identities=24% Similarity=0.349 Sum_probs=81.5
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|||+++++++|+++|+.||.|..|.++.+..+++++|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 023381 187 NFPEVPRG 194 (283)
Q Consensus 187 ~~a~~~~~ 194 (283)
.++.....
T Consensus 97 ~~a~~~~~ 104 (126)
T 3ex7_B 97 DWCFVRGP 104 (126)
T ss_dssp EESEESSS
T ss_pred EEecCCCC
Confidence 99875543
No 84
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=126.60 Aligned_cols=86 Identities=28% Similarity=0.452 Sum_probs=80.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|.+||.|..|.++++..+++++|||||+|.+.++|.+|++. ++..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999998 9999999999999
Q ss_pred cccCCCC
Q 023381 188 FPEVPRG 194 (283)
Q Consensus 188 ~a~~~~~ 194 (283)
++..+..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9875543
No 85
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=5e-18 Score=133.73 Aligned_cols=87 Identities=24% Similarity=0.482 Sum_probs=81.4
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|+.||.|..|.|+++..+++++|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 023381 188 FPEVPRG 194 (283)
Q Consensus 188 ~a~~~~~ 194 (283)
++.....
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9986543
No 86
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=5.7e-18 Score=121.23 Aligned_cols=83 Identities=33% Similarity=0.562 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++++++|+++|++||.|..+.+.++ +|+++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999874 789999999999999999999999999999999999999
Q ss_pred ccCCC
Q 023381 189 PEVPR 193 (283)
Q Consensus 189 a~~~~ 193 (283)
+....
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 87543
No 87
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=8.9e-19 Score=131.49 Aligned_cols=81 Identities=33% Similarity=0.575 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.+.++|||+|||+++++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999986
Q ss_pred c
Q 023381 190 E 190 (283)
Q Consensus 190 ~ 190 (283)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 3
No 88
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=125.78 Aligned_cols=84 Identities=19% Similarity=0.290 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
....++|||+|||+++++++|+++|.+||.|..+.++.+..+|+++|||||+|.+.++|.+|++.++|..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34567899999999999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred ccCC
Q 023381 189 PEVP 192 (283)
Q Consensus 189 a~~~ 192 (283)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7643
No 89
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.1e-18 Score=125.05 Aligned_cols=86 Identities=24% Similarity=0.324 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEE-ecCCCCCceeEEEEEECCHHHHHHHHHhhC--CCccCCcee
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIV-YDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGRTV 184 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~-i~~i~i~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~i~gr~l 184 (283)
..+.++|||+|||+++++++|+++|..||. |..+.++ .+..+|+++|||||+|.+.++|.+|++.++ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEecccCCCC
Q 023381 185 KVNFPEVPRG 194 (283)
Q Consensus 185 ~v~~a~~~~~ 194 (283)
.|.++.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999886544
No 90
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.8e-19 Score=124.60 Aligned_cols=81 Identities=23% Similarity=0.453 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.+.++|||+|||+++++++|+++|++||.|..+.++++..+|+++|||||+|.+.++|.+|++.|||..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999988865
Q ss_pred c
Q 023381 190 E 190 (283)
Q Consensus 190 ~ 190 (283)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 91
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=122.20 Aligned_cols=86 Identities=28% Similarity=0.438 Sum_probs=78.5
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|||+++++++|+++|..||.|..|.++++..+|+++|||||+|.+.++|.+|++ ++..++|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 334567899999999999999999999999999999999999899999999999999999999998 578999999999
Q ss_pred ecccCCCC
Q 023381 187 NFPEVPRG 194 (283)
Q Consensus 187 ~~a~~~~~ 194 (283)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99876543
No 92
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=1.4e-18 Score=125.14 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
..++|||+|||+++++++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+|++.+||..|.||.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999875
No 93
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=3e-18 Score=126.84 Aligned_cols=84 Identities=25% Similarity=0.464 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++++++|+++|+.||.|..|+++++..+|+++|||||+|.+.++|.+|++.+ +..++|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 446789999999999999999999999999999999999989999999999999999999999974 6999999999999
Q ss_pred ccCCC
Q 023381 189 PEVPR 193 (283)
Q Consensus 189 a~~~~ 193 (283)
+....
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87543
No 94
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=122.30 Aligned_cols=86 Identities=28% Similarity=0.550 Sum_probs=78.1
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|||+++++++|+++|++||.|..|.++++. +.++|||||+|.+.++|.+|++.|+|..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999886 348999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 023381 187 NFPEVPRG 194 (283)
Q Consensus 187 ~~a~~~~~ 194 (283)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99876543
No 95
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=126.40 Aligned_cols=70 Identities=10% Similarity=0.113 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|++||.|..++|+.|+.+|+++|||||+|.+.++|.+|++.|||..+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~ 73 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV 73 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3568999999999999999999999999999999999999999999999999999999999999999864
No 96
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.2e-18 Score=124.21 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhC--CCccCCceeEE
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGRTVKV 186 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~i~gr~l~v 186 (283)
..+.++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.++ +..|.||.|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999864 6999999999999999999876 47899999999
Q ss_pred ecccCCCC
Q 023381 187 NFPEVPRG 194 (283)
Q Consensus 187 ~~a~~~~~ 194 (283)
.++..+..
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99875433
No 97
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9e-18 Score=120.01 Aligned_cols=81 Identities=21% Similarity=0.366 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
....++|||+|||+++++++|+++|+.| .|..|+++++ .+|+++|||||+|.+.++|.+|++ +||..|+||.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 689999999999999999999999 999999999999999
Q ss_pred ccCC
Q 023381 189 PEVP 192 (283)
Q Consensus 189 a~~~ 192 (283)
+..+
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8754
No 98
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=9.3e-19 Score=124.92 Aligned_cols=80 Identities=39% Similarity=0.679 Sum_probs=74.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccCC
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~~ 192 (283)
++|||+|||+++++++|+++|++||.|..+.+.++..+|+++|||||+|.+.+ |.+|+..+||..++|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999989999999999999999 99999999999999999999998754
Q ss_pred C
Q 023381 193 R 193 (283)
Q Consensus 193 ~ 193 (283)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 99
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-18 Score=120.02 Aligned_cols=76 Identities=26% Similarity=0.517 Sum_probs=72.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
++|||+|||+++++++|+++|++||.|..+.+.+++.+|+++|||||+|.+.++|.+|++.++ ..++|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999888 9999999999876
No 100
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.6e-18 Score=122.04 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeE
Q 023381 110 DEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~----~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~ 185 (283)
.+..+|||+|||+++++++|+ ++|++||.|..|+++++..+ +|||||+|.+.++|.+|++.+||..++||.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456799999999999999999 99999999999999988754 89999999999999999999999999999999
Q ss_pred EecccCC
Q 023381 186 VNFPEVP 192 (283)
Q Consensus 186 v~~a~~~ 192 (283)
|.++...
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9998644
No 101
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=8.5e-18 Score=127.23 Aligned_cols=81 Identities=23% Similarity=0.491 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccC
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~ 191 (283)
.++|||+|||+++++++|+++|++||.|..|.++++..+|+++|||||+|.+.++|.+|+ .++|..|+|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 469999999999999999999999999999999999889999999999999999999999 6999999999999999875
Q ss_pred CC
Q 023381 192 PR 193 (283)
Q Consensus 192 ~~ 193 (283)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 102
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=4.1e-18 Score=118.97 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
...-|||+||++.+|+++|+++|.+||+|..++++. ++|||||+|.++++|.+|++.||+..+.||.|+|++|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356799999999999999999999999999999964 5899999999999999999999999999999999976
No 103
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.74 E-value=9.4e-18 Score=132.37 Aligned_cols=85 Identities=33% Similarity=0.550 Sum_probs=80.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
...++|||+|||+++++++|+++|+.||.|..|.++++..+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 023381 190 EVPRG 194 (283)
Q Consensus 190 ~~~~~ 194 (283)
.....
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 75543
No 104
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=1.6e-17 Score=125.70 Aligned_cols=85 Identities=28% Similarity=0.506 Sum_probs=79.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+.+++++|+++|+.||.|..|.+.++. +|+++|||||+|.+.++|.+|++.++|..+.|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cccCCC
Q 023381 188 FPEVPR 193 (283)
Q Consensus 188 ~a~~~~ 193 (283)
++....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 987543
No 105
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.3e-18 Score=125.80 Aligned_cols=82 Identities=29% Similarity=0.511 Sum_probs=77.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccC
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~ 191 (283)
.++|||+|||+++++++|+++|..||.|..|.++++..+++++|||||+|.+.++|.+|++. ++..|+|+.|.|.++..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 47999999999999999999999999999999999998999999999999999999999997 99999999999999876
Q ss_pred CCC
Q 023381 192 PRG 194 (283)
Q Consensus 192 ~~~ 194 (283)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 106
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-17 Score=121.79 Aligned_cols=84 Identities=29% Similarity=0.553 Sum_probs=75.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344678999999999999999999999999999999954 35689999999999999999999999999999999999
Q ss_pred cccCCCC
Q 023381 188 FPEVPRG 194 (283)
Q Consensus 188 ~a~~~~~ 194 (283)
++.....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9876543
No 107
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=3.9e-18 Score=131.07 Aligned_cols=86 Identities=33% Similarity=0.540 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++++++|+++|+.||.|..|.++++..+++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023381 189 PEVPRG 194 (283)
Q Consensus 189 a~~~~~ 194 (283)
+.....
T Consensus 124 a~~~~~ 129 (135)
T 2lea_A 124 ARYGRP 129 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 875543
No 108
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=122.75 Aligned_cols=82 Identities=21% Similarity=0.343 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE-EEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS-AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~-i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
.....+|||+|||+++++++|+++|..||.|.. |.++++ .+|+++|||||+|.+.++|.+|++. ++..++||.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 346789999999999999999999999999987 888888 6999999999999999999999997 9999999999999
Q ss_pred cccCC
Q 023381 188 FPEVP 192 (283)
Q Consensus 188 ~a~~~ 192 (283)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 87643
No 109
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=124.62 Aligned_cols=82 Identities=20% Similarity=0.321 Sum_probs=74.9
Q ss_pred cCCCCCeEEEcCCCCCC------CHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCC
Q 023381 108 ASDEAARLYVGNLPYSM------TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~------te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g 181 (283)
.....++|||+|||+.+ ++++|+++|++||.|..|.+. ..+|+++|||||+|.+.++|.+|++.|||..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 789999999999999999988 3579999999999999999999999999999999
Q ss_pred c-eeEEecccC
Q 023381 182 R-TVKVNFPEV 191 (283)
Q Consensus 182 r-~l~v~~a~~ 191 (283)
+ .|.|.++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999998763
No 110
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=120.70 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=71.9
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCc--cCCcee
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ--IGGRTV 184 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~--i~gr~l 184 (283)
....+.++|||+|||+++++++|+++|++||.|.++.+++ .||||||+|.+.++|.+|++.++|.. +.||.|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 4456789999999999999999999999999999999974 36999999999999999999999876 789999
Q ss_pred EEecccCC
Q 023381 185 KVNFPEVP 192 (283)
Q Consensus 185 ~v~~a~~~ 192 (283)
.|.++..+
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99998743
No 111
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-18 Score=128.80 Aligned_cols=79 Identities=23% Similarity=0.413 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccC
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~ 191 (283)
.++|||+|||+++++++|+++|+.||.|..|.++++..+|+++|||||+|.+.++|.+|+ .++|..|.|+.|.|.++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 479999999999999999999999999999999999988999999999999999999999 8999999999999999764
No 112
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=125.89 Aligned_cols=82 Identities=21% Similarity=0.517 Sum_probs=73.8
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecC-CCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR-VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
.....++|||+|||+++++++|+++|+.|| |..|+++++. .+|+++|||||+|.+.++|.+|+ .++|..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345678999999999999999999999999 9999999988 68999999999999999999999 79999999999999
Q ss_pred ecccC
Q 023381 187 NFPEV 191 (283)
Q Consensus 187 ~~a~~ 191 (283)
.++..
T Consensus 93 ~~a~~ 97 (100)
T 2j76_E 93 DVADQ 97 (100)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 99864
No 113
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=6.4e-18 Score=134.38 Aligned_cols=124 Identities=14% Similarity=0.140 Sum_probs=67.0
Q ss_pred EEECCHHHHHHHHHhhCCCccC--CceeEEecccCCCCCCccCC---CCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHH
Q 023381 159 VTMGSVEEAKEAIRLFDGSQIG--GRTVKVNFPEVPRGGERAAM---GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233 (283)
Q Consensus 159 v~f~~~~~a~~a~~~l~g~~i~--gr~l~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~ 233 (283)
.+|.+.+++..|+..+++.... |+...+..+........... .............+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6788999999999988887665 66666665332111111110 000011122233456789999999999999999
Q ss_pred HHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 234 ~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..+
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 139 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 139 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 9999999999999999999999999999999999999999999999764
No 114
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=126.17 Aligned_cols=81 Identities=16% Similarity=0.381 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCcee
Q 023381 109 SDEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~----~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l 184 (283)
..+.++|||+|||+.+++++|+ ++|++||.|..|.+.+ +++++|||||+|.+.++|..|++.|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4567899999999999999876 6999999999987742 68899999999999999999999999999999999
Q ss_pred EEecccCC
Q 023381 185 KVNFPEVP 192 (283)
Q Consensus 185 ~v~~a~~~ 192 (283)
.|.++..+
T Consensus 103 ~V~~a~~~ 110 (127)
T 2a3j_A 103 VITFSETP 110 (127)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 99998744
No 115
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=9.4e-18 Score=129.54 Aligned_cols=80 Identities=33% Similarity=0.519 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.+.++|||+|||+.+++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|++.++|..|.|+.|+|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999875
No 116
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=121.96 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
....++|||+|||+++++++|+++|+.||.+ .|+|++++ +|+++|||||+|.+.++|++|++ +|+..|.||.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4466899999999999999999999999955 99999998 89999999999999999999996 799999999999998
Q ss_pred ccCCC
Q 023381 189 PEVPR 193 (283)
Q Consensus 189 a~~~~ 193 (283)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 76443
No 117
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=122.90 Aligned_cols=81 Identities=32% Similarity=0.540 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCcc--------CC
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI--------GG 181 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i--------~g 181 (283)
.+.++|||+|||+++++++|+++|..||.|..+.++++. +++++|||||+|.+.++|.+|++.|||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456899999999999999999999999999999999998 999999999999999999999999999999 57
Q ss_pred ceeEEecccC
Q 023381 182 RTVKVNFPEV 191 (283)
Q Consensus 182 r~l~v~~a~~ 191 (283)
+.|.|.++.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 7899988763
No 118
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=3.2e-18 Score=117.76 Aligned_cols=75 Identities=25% Similarity=0.450 Sum_probs=71.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 114 ~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
+|||+|||+++++++|+++|++||.|..+.+.++..+|+++|||||+|.+.++|.+|++. ++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999998999999999999999999999995 999999999999864
No 119
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.9e-18 Score=124.55 Aligned_cols=82 Identities=29% Similarity=0.601 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++++++|+++|++||.|..|.++++. +.++|||||+|.+.++|.+|++.++|..++|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4467899999999999999999999999999999999885 45899999999999999999999999999999999999
Q ss_pred ccCC
Q 023381 189 PEVP 192 (283)
Q Consensus 189 a~~~ 192 (283)
+..+
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8643
No 120
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=123.33 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhC--CCccCCceeEE
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGRTVKV 186 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~i~gr~l~v 186 (283)
..+.++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++.++ +..|.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 456789999999999999999999999999999999865 6999999999999999999887 46899999999
Q ss_pred ecccCCCC
Q 023381 187 NFPEVPRG 194 (283)
Q Consensus 187 ~~a~~~~~ 194 (283)
.++..+..
T Consensus 102 ~~a~~k~~ 109 (119)
T 2ad9_A 102 QFSNHKEL 109 (119)
T ss_dssp EECSSSSC
T ss_pred EEccCCCC
Confidence 99875443
No 121
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=7.5e-18 Score=129.29 Aligned_cols=79 Identities=24% Similarity=0.424 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC---ceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT---VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~---i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
.+.++|||+|||+++|+++|+++|+.||. |..|+++++.. |+++|||||+|.+.++|.+|++ +||..|+||.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45679999999999999999999999999 89999999986 9999999999999999999999 9999999999999
Q ss_pred eccc
Q 023381 187 NFPE 190 (283)
Q Consensus 187 ~~a~ 190 (283)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 9865
No 122
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.8e-17 Score=131.72 Aligned_cols=86 Identities=24% Similarity=0.366 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+.+++++|+.+|.+||.|..|.++.+..+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023381 189 PEVPRG 194 (283)
Q Consensus 189 a~~~~~ 194 (283)
+.....
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 875543
No 123
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=9.6e-18 Score=124.51 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=78.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHH---HHHHhcCCceEEEEEecCCCC---CceeEEEEEECCHHHHHHHHHhhCCCccCC
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLA---EVFAEAGTVASAEIVYDRVTD---RSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~---~~F~~~G~i~~i~i~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~g~~i~g 181 (283)
.....++|||+|||+++++++|+ ++|.+||.|..|.+.++..++ +++|||||+|.+.++|.+|++.|||..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34467899999999999999999 999999999999999887654 566999999999999999999999999999
Q ss_pred ceeEEecccCCC
Q 023381 182 RTVKVNFPEVPR 193 (283)
Q Consensus 182 r~l~v~~a~~~~ 193 (283)
+.|.|.++..+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999988654
No 124
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=5.8e-18 Score=118.36 Aligned_cols=73 Identities=19% Similarity=0.363 Sum_probs=67.8
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCc-ee
Q 023381 112 AARLYVGNLPYSM------TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR-TV 184 (283)
Q Consensus 112 ~~~l~v~nLp~~~------te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr-~l 184 (283)
.++|||+|||+.+ ++++|+++|++||.|..+.+. +.+|+++|||||+|.+.++|.+|++.|||..++|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 34799999999999999999999999999999999 88
Q ss_pred EE
Q 023381 185 KV 186 (283)
Q Consensus 185 ~v 186 (283)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 125
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7.1e-18 Score=122.80 Aligned_cols=81 Identities=14% Similarity=0.253 Sum_probs=72.4
Q ss_pred ccCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCC--ccCCce
Q 023381 107 AASDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS--QIGGRT 183 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~-~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~--~i~gr~ 183 (283)
....+.++|||+|||+ ++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++. .|.||.
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3455789999999999 9999999999999999999999865 589999999999999999988865 599999
Q ss_pred eEEecccCCC
Q 023381 184 VKVNFPEVPR 193 (283)
Q Consensus 184 l~v~~a~~~~ 193 (283)
|.|.++....
T Consensus 84 l~V~~a~~~~ 93 (102)
T 1x4d_A 84 VRVHLSQKYK 93 (102)
T ss_dssp CEEEEECCCT
T ss_pred EEEEECCCCC
Confidence 9999987543
No 126
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=8.4e-18 Score=126.20 Aligned_cols=80 Identities=24% Similarity=0.397 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCC---ceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeE
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT---VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~---i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~ 185 (283)
..+.++|||+|||+++++++|+++|+.||. |..|+++++.. |+++|||||+|.+.++|.+|++ +||..|+||.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346789999999999999999999999999 89999999985 9999999999999999999999 899999999999
Q ss_pred Eeccc
Q 023381 186 VNFPE 190 (283)
Q Consensus 186 v~~a~ 190 (283)
|.++.
T Consensus 92 V~~a~ 96 (118)
T 2db1_A 92 VFKSH 96 (118)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 99875
No 127
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.9e-18 Score=126.69 Aligned_cols=81 Identities=16% Similarity=0.318 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCc-eEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i-~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
..+.++|||+|||+++++++|+++|+.||.| ..|+|+++. +|+++|||||+|.+.++|.+|++. |+..|.||.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3467899999999999999999999999999 899999998 999999999999999999999996 9999999999999
Q ss_pred cccC
Q 023381 188 FPEV 191 (283)
Q Consensus 188 ~a~~ 191 (283)
++..
T Consensus 90 ~a~~ 93 (114)
T 2cpy_A 90 VVTL 93 (114)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9864
No 128
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.6e-17 Score=119.73 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCC--ccCCceeEE
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS--QIGGRTVKV 186 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~--~i~gr~l~v 186 (283)
..+.++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++.+++. .+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999998753 799999999999999999988654 599999999
Q ss_pred ecccCCCC
Q 023381 187 NFPEVPRG 194 (283)
Q Consensus 187 ~~a~~~~~ 194 (283)
.++..+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99875443
No 129
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-18 Score=126.70 Aligned_cols=86 Identities=26% Similarity=0.402 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++++++|+++|..||.|..+.+..+..+|+++|||||+|.+.++|.+|++.|+|..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 44678999999999999999999999999995443333333889999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023381 189 PEVPRG 194 (283)
Q Consensus 189 a~~~~~ 194 (283)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 886544
No 130
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.9e-17 Score=115.51 Aligned_cols=78 Identities=26% Similarity=0.511 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.++|..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999997 68999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023381 189 PEVPRG 194 (283)
Q Consensus 189 a~~~~~ 194 (283)
+..+..
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876544
No 131
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=6.9e-18 Score=121.50 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=63.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCC--ceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPG--LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
.-++|||+|||+.+|+++|+++|++||. |.+|++++|+.+|++||||||+|.+.++|.+|++.|||.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC
Confidence 4579999999999999999999999995 679999999999999999999999999999999999885
No 132
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=119.18 Aligned_cols=81 Identities=11% Similarity=0.209 Sum_probs=71.9
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhh--CCCccCCceeE
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF--DGSQIGGRTVK 185 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~g~~i~gr~l~ 185 (283)
...+.++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++.+ ++..+.||.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3457789999999999999999999999999999988754 799999999999999999976 46789999999
Q ss_pred EecccCCCC
Q 023381 186 VNFPEVPRG 194 (283)
Q Consensus 186 v~~a~~~~~ 194 (283)
|.++..+..
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999875443
No 133
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.5e-18 Score=127.93 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++++++|+++|..||.|..+.++.+..+|+++|||||+|.+.++|.+|++ +||..|+||.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999987777777799999999999999999999999 999999999999998
Q ss_pred cc
Q 023381 189 PE 190 (283)
Q Consensus 189 a~ 190 (283)
+.
T Consensus 101 a~ 102 (124)
T 1wel_A 101 IT 102 (124)
T ss_dssp EC
T ss_pred CC
Confidence 76
No 134
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.7e-17 Score=122.83 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G-~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
....+|||+|||+++++++|+++|++|| .|..+.+.. ++++|||||+|.+.++|.+|++.|||..+.||.|.|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3467999999999999999999999999 899998853 35799999999999999999999999999999999999
Q ss_pred ccCC
Q 023381 189 PEVP 192 (283)
Q Consensus 189 a~~~ 192 (283)
+..+
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8644
No 135
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-18 Score=124.74 Aligned_cols=82 Identities=26% Similarity=0.376 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++++++|+++|+.||.|.. .++.+..+|+++|||||+|.+.++|.+|++ ++|..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345779999999999999999999999999988 667777789999999999999999999999 999999999999999
Q ss_pred ccCC
Q 023381 189 PEVP 192 (283)
Q Consensus 189 a~~~ 192 (283)
+..+
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8754
No 136
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=120.23 Aligned_cols=83 Identities=30% Similarity=0.520 Sum_probs=74.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|++||.| +++++ .+++++|||||+|.+.++|.+|++.++|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34578899999999999999999999999977 56666 589999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 023381 188 FPEVPRG 194 (283)
Q Consensus 188 ~a~~~~~ 194 (283)
++..+..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9876543
No 137
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=3.7e-18 Score=122.11 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=61.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCC-CceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G-~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
++|||+|||+.+|+++|+++|++|| .|.+|+|++++.+|.+||||||+|.+.++|.+|++.|+|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~ 67 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHS 67 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCC
Confidence 6899999999999999999999999 8999999999999999999999999999999999987543
No 138
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=2e-17 Score=138.34 Aligned_cols=80 Identities=25% Similarity=0.441 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC--CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G--~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..++|||+|||+++++++|+++|.+|| .|..|+|++++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 023381 189 PE 190 (283)
Q Consensus 189 a~ 190 (283)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 139
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=6.5e-18 Score=129.84 Aligned_cols=110 Identities=25% Similarity=0.338 Sum_probs=67.5
Q ss_pred eEEEEEECCHHHHHHHHHhhCCCccCCceeEEecccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHH
Q 023381 155 GFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234 (283)
Q Consensus 155 g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~ 234 (283)
-|+|++|.+...+..|+..++|....|+.- +.+.. ........++|||+|||+.+++++|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~-----------------~~~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR-----------------PPPDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp -------------------------------CCSCC-----------------SCSSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCC-----------------CCCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 467888888888889998888776665431 11111 011223457899999999999999999
Q ss_pred HhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 235 ~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+|+.||.|..++++.++.+|.++|||||+|.+.++|.+|+..|||..+
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i 114 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL 114 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 999999999999999998999999999999999999999999999764
No 140
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=118.33 Aligned_cols=85 Identities=34% Similarity=0.508 Sum_probs=76.8
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|||+++++++|+++|+.| ..+.++++..+++++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345578899999999999999999999977 36888888889999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 023381 187 NFPEVPRG 194 (283)
Q Consensus 187 ~~a~~~~~ 194 (283)
.++..+..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99886544
No 141
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.2e-17 Score=117.06 Aligned_cols=80 Identities=28% Similarity=0.468 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
....++|||+|||+++++++|+++|++||.|. +.++. ++++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 66664 46789999999999999999999999999999999999
Q ss_pred ccCCC
Q 023381 189 PEVPR 193 (283)
Q Consensus 189 a~~~~ 193 (283)
+..+.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87543
No 142
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.6e-17 Score=116.90 Aligned_cols=79 Identities=24% Similarity=0.462 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccC--CceeEE
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG--GRTVKV 186 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~--gr~l~v 186 (283)
..+.++|||+|||+++++++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|++.|||..+. |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456789999999999999999999999999999998743 789999999999999999999999999 999999
Q ss_pred ecccCCC
Q 023381 187 NFPEVPR 193 (283)
Q Consensus 187 ~~a~~~~ 193 (283)
.++..+.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9987553
No 143
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=123.56 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCC---ceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeE
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT---VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~---i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~ 185 (283)
.....+|||+|||+++++++|+++|+.||. |..|+++++.. |+++|||||+|.+.++|.+|++ ++|..++||.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 456789999999999999999999999988 89999999986 9999999999999999999999 899999999999
Q ss_pred Eeccc
Q 023381 186 VNFPE 190 (283)
Q Consensus 186 v~~a~ 190 (283)
|.++.
T Consensus 86 V~~a~ 90 (107)
T 2lmi_A 86 VYEIN 90 (107)
T ss_dssp CEECC
T ss_pred EEECC
Confidence 99875
No 144
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=118.46 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
....++|||+|||+++++++|+++|+.||.|..|.+.++ +|||||+|.+.++|.+|++.|+|..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345789999999999999999999999999999999865 79999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023381 189 PEVPRG 194 (283)
Q Consensus 189 a~~~~~ 194 (283)
+.....
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 876543
No 145
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=4.5e-17 Score=115.23 Aligned_cols=70 Identities=29% Similarity=0.477 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 73 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3567999999999999999999999999999999999988999999999999999999999999999764
No 146
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3e-17 Score=123.74 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCc----eEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeE
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTV----ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i----~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~ 185 (283)
.+..+|||+|||+++|+++|+++|+.||.| ..|+|+++. +|+++|||||+|.+.++|.+|++. |+..++||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999999999975 689999985 899999999999999999999996 99999999999
Q ss_pred Eeccc
Q 023381 186 VNFPE 190 (283)
Q Consensus 186 v~~a~ 190 (283)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98764
No 147
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.70 E-value=1.7e-17 Score=118.40 Aligned_cols=67 Identities=25% Similarity=0.420 Sum_probs=62.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCC--CceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQP--GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G--~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+|||+|||+.+++++|+++|++|| .|..++++.++.+|+++|||||+|.+.++|.+|++.|||..+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~ 70 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL 70 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee
Confidence 4799999999999999999999999 999999999999999999999999999999999999999764
No 148
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=115.41 Aligned_cols=69 Identities=28% Similarity=0.434 Sum_probs=65.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV 72 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE
Confidence 568999999999999999999999999999999999998999999999999999999999999998754
No 149
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=1.4e-17 Score=121.21 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=65.3
Q ss_pred CCeEEEcCCCC------CCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 215 PHKIYAGNLGW------GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 215 ~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.++|||+|||+ .+++++|+++|++||.|..++|+.++.+|+++|||||+|.+.++|.+|++.|||..+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc
Confidence 57899999999 999999999999999999999999999999999999999999999999999999865
No 150
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=117.22 Aligned_cols=78 Identities=26% Similarity=0.340 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCC-----cee
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG-----RTV 184 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g-----r~l 184 (283)
...++|||+|||+++++++|+++|.+||.|..|.++.+ |||||+|.+.++|.+|++.|||..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999865 899999999999999999999999999 999
Q ss_pred EEecccCCCC
Q 023381 185 KVNFPEVPRG 194 (283)
Q Consensus 185 ~v~~a~~~~~ 194 (283)
.|.++.....
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999886543
No 151
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=5.1e-17 Score=114.43 Aligned_cols=70 Identities=30% Similarity=0.438 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 74 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 74 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4568999999999999999999999999999999999988999999999999999999999999999864
No 152
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.7e-17 Score=115.68 Aligned_cols=71 Identities=27% Similarity=0.411 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 82 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 82 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999764
No 153
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=129.86 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=75.3
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEE-----EecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCC
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEI-----VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i-----~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g 181 (283)
....+.++|||+|||+++++++|+.+|+.||.|..+.+ ++...+|+++|||||+|.+.++|.+|+..|||..|.|
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 34567889999999999999999999999999987411 1122378999999999999999999999999999999
Q ss_pred ceeEEecccCCCC
Q 023381 182 RTVKVNFPEVPRG 194 (283)
Q Consensus 182 r~l~v~~a~~~~~ 194 (283)
+.|.|.++.....
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999875443
No 154
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=1.5e-16 Score=116.74 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=65.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|..++++.++ +|.++|||||+|.+.++|.+|++.|||..+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 81 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQT 81 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 457899999999999999999999999999999999998 799999999999999999999999999865
No 155
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=8.5e-17 Score=118.75 Aligned_cols=77 Identities=27% Similarity=0.538 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+++++++|+++|++||.|..|.+. +|||||+|.+.++|.+|++.|+|..++|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4467899999999999999999999999999999997 79999999999999999999999999999999999
Q ss_pred ccCCC
Q 023381 189 PEVPR 193 (283)
Q Consensus 189 a~~~~ 193 (283)
+..+.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 87543
No 156
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.5e-17 Score=117.01 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCce-EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|. .++++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL 77 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 4568999999999999999999999999999 999999999999999999999999999999999999764
No 157
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=2.7e-17 Score=118.92 Aligned_cols=81 Identities=19% Similarity=0.385 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCcee
Q 023381 109 SDEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~----~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l 184 (283)
..+.++|||+|||+++++++|+ ++|++||.|..|.+.+ +|+++|||||+|.+.++|.+|++.|+|..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4577899999999999999999 9999999999998863 57789999999999999999999999999999999
Q ss_pred EEecccCC
Q 023381 185 KVNFPEVP 192 (283)
Q Consensus 185 ~v~~a~~~ 192 (283)
.|.++..+
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99998754
No 158
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=114.57 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 83 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL 83 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee
Confidence 44668999999999999999999999999999999999998999999999999999999999999999764
No 159
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9.7e-17 Score=116.48 Aligned_cols=80 Identities=28% Similarity=0.486 Sum_probs=73.3
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999999744 6999999999999999999999999999999999
Q ss_pred cccCCC
Q 023381 188 FPEVPR 193 (283)
Q Consensus 188 ~a~~~~ 193 (283)
++..+.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 987543
No 160
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-18 Score=129.95 Aligned_cols=86 Identities=27% Similarity=0.451 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE--------EEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccC
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS--------AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~--------i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~ 180 (283)
..+.++|||+|||+++++++|+++|++||.|.. |.++++..+++++|||||+|.+.++|.+|++.|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999998 899999889999999999999999999999999999999
Q ss_pred CceeEEecccCCCC
Q 023381 181 GRTVKVNFPEVPRG 194 (283)
Q Consensus 181 gr~l~v~~a~~~~~ 194 (283)
|+.|.|.++..+..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999876543
No 161
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=1.4e-16 Score=115.31 Aligned_cols=77 Identities=22% Similarity=0.452 Sum_probs=70.5
Q ss_pred ccCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeE
Q 023381 107 AASDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~-~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~ 185 (283)
....+.++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.++|..++|+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4456788999999998 99999999999999999999883 79999999999999999999999999999999
Q ss_pred EecccC
Q 023381 186 VNFPEV 191 (283)
Q Consensus 186 v~~a~~ 191 (283)
|.++..
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 999764
No 162
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.9e-17 Score=117.26 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 82 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY 82 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee
Confidence 34568999999999999999999999999999999999998999999999999999999999999999764
No 163
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=7.5e-17 Score=117.47 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
..++|||+|||.++++++|+++|++||.|..+++. +++|||||+|.+.++|.+|+..++|..++|+.|+|.++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999997 457999999999999999999999999999999999876
Q ss_pred C
Q 023381 191 V 191 (283)
Q Consensus 191 ~ 191 (283)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 164
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.1e-17 Score=119.90 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=71.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
..+|||+|||+++++++|+++|+.| .|..|+|+++. .|+++|||||+|.+.++|.+|+. +|+..|+||.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 4689999999999999999999999 89999999997 49999999999999999999995 89999999999998765
No 165
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=6.9e-17 Score=116.58 Aligned_cols=68 Identities=26% Similarity=0.514 Sum_probs=65.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.++|||+|||+.+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 69 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL 69 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE
Confidence 57899999999999999999999999999999999998999999999999999999999999999754
No 166
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=114.95 Aligned_cols=69 Identities=30% Similarity=0.539 Sum_probs=66.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 72 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee
Confidence 568999999999999999999999999999999999998999999999999999999999999999764
No 167
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.9e-17 Score=112.98 Aligned_cols=76 Identities=21% Similarity=0.374 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhh-CCCccCCceeEEe
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF-DGSQIGGRTVKVN 187 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~g~~i~gr~l~v~ 187 (283)
..+.++|||+|||+++++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|++.| +|..+.|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456789999999999999999999999999999999864 799999999999999999988 9999999999999
Q ss_pred ccc
Q 023381 188 FPE 190 (283)
Q Consensus 188 ~a~ 190 (283)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 863
No 168
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=115.43 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS--------AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....++|||+|||+.+++++|+++|++||.|.. ++++.++.+|+++|||||+|.+.++|.+|++.|||..+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 345689999999999999999999999999999 99999999999999999999999999999999999764
No 169
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.3e-17 Score=120.40 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhC--CCccCCceeE
Q 023381 109 SDEAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGRTVK 185 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~-~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~i~gr~l~ 185 (283)
..+.++|||+|||++ +++++|+++|++||.|.+|++++ ++|||||+|.+.++|.+|++.++ +..|.||.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 99999999999999999999973 47999999999999999999875 4569999999
Q ss_pred EecccCCC
Q 023381 186 VNFPEVPR 193 (283)
Q Consensus 186 v~~a~~~~ 193 (283)
|.++....
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99987443
No 170
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.9e-16 Score=113.96 Aligned_cols=78 Identities=24% Similarity=0.452 Sum_probs=71.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhc--CCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeE
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEA--GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~--G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~ 185 (283)
...+.++|||+|||+++++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|++.|||..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 889888764 68999999999999999999999999999999
Q ss_pred EecccCCC
Q 023381 186 VNFPEVPR 193 (283)
Q Consensus 186 v~~a~~~~ 193 (283)
|.++....
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99987554
No 171
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=117.08 Aligned_cols=71 Identities=24% Similarity=0.408 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL 82 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 34668999999999999999999999999999999999998999999999999999999999999999764
No 172
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=9.2e-17 Score=112.57 Aligned_cols=67 Identities=37% Similarity=0.726 Sum_probs=64.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 68 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 68 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee
Confidence 5799999999999999999999999999999999998999999999999999999999999999764
No 173
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=7.5e-17 Score=118.51 Aligned_cols=70 Identities=21% Similarity=0.387 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999764
No 174
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=112.67 Aligned_cols=78 Identities=27% Similarity=0.544 Sum_probs=71.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|++||.|..+.++ ++||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999997 4599999999999999999999999999999999
Q ss_pred cccCCC
Q 023381 188 FPEVPR 193 (283)
Q Consensus 188 ~a~~~~ 193 (283)
++....
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 987553
No 175
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.9e-17 Score=120.63 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=70.8
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECC----HHH----HHHHHH--hhCCCc
Q 023381 113 ARLYVGNL----PYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS----VEE----AKEAIR--LFDGSQ 178 (283)
Q Consensus 113 ~~l~v~nL----p~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~----~~~----a~~a~~--~l~g~~ 178 (283)
..|||+|| |+.+++.+|+++|+.||.|..+.++.|+.||+++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred cCCceeEEeccc
Q 023381 179 IGGRTVKVNFPE 190 (283)
Q Consensus 179 i~gr~l~v~~a~ 190 (283)
|+||.|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999754
No 176
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=2.6e-16 Score=115.03 Aligned_cols=78 Identities=19% Similarity=0.452 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.+.++|||+|||+++++++|+++|++||.|..|.+. +|||||+|.+.++|.+|++.|+|..|.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 467899999999999999999999999999999886 569999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023381 190 EVPRGG 195 (283)
Q Consensus 190 ~~~~~~ 195 (283)
..+...
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 865543
No 177
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.7e-16 Score=112.53 Aligned_cols=79 Identities=30% Similarity=0.502 Sum_probs=72.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+++++++|+++|++||.|..|.+. ++||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999996 4599999999999999999999999999999999
Q ss_pred cccCCCC
Q 023381 188 FPEVPRG 194 (283)
Q Consensus 188 ~a~~~~~ 194 (283)
++..+..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9875543
No 178
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.9e-17 Score=117.55 Aligned_cols=71 Identities=30% Similarity=0.432 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.++|||+|||+.+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 79 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999764
No 179
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=114.89 Aligned_cols=69 Identities=26% Similarity=0.457 Sum_probs=65.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|++ |||..+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~ 76 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI 76 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE
Confidence 456899999999999999999999999999999999999999999999999999999999998 898764
No 180
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=116.02 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF 75 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3568999999999999999999999999999999999998999999999999999999999999999764
No 181
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.68 E-value=1.8e-16 Score=118.20 Aligned_cols=71 Identities=27% Similarity=0.488 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....++|||+|||+.+++++|+++|+.||.|..|+++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 82 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999764
No 182
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.2e-16 Score=115.29 Aligned_cols=79 Identities=20% Similarity=0.410 Sum_probs=71.0
Q ss_pred cCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 108 ASDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~-~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
...+.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.++|..+.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345788999999998 99999999999999999999984 799999999999999999999999999999999
Q ss_pred ecccCCCC
Q 023381 187 NFPEVPRG 194 (283)
Q Consensus 187 ~~a~~~~~ 194 (283)
.++.....
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99875443
No 183
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=116.38 Aligned_cols=71 Identities=37% Similarity=0.572 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.++|||+|||+.+++++|+++|++||.|..++++.++.++.++|||||+|.+.++|.+|++.|||..+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 79 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999764
No 184
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=3.5e-17 Score=119.47 Aligned_cols=79 Identities=23% Similarity=0.435 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
+.++|||+|||+++++++|+++|+.||.|..|.++++. +|+++|||||+|.+.++|.+|++ +|..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45799999999999999999999999999999999998 99999999999999999999998 9999999999999886
Q ss_pred CC
Q 023381 191 VP 192 (283)
Q Consensus 191 ~~ 192 (283)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 44
No 185
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=4.4e-17 Score=117.58 Aligned_cols=78 Identities=24% Similarity=0.443 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.+.++|||+|||+.+++++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|++.++|..+.|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 356899999999999999999999999988766 337899999999999999999999999999999999999998
Q ss_pred cCC
Q 023381 190 EVP 192 (283)
Q Consensus 190 ~~~ 192 (283)
..+
T Consensus 89 ~~~ 91 (96)
T 1fjc_A 89 GEK 91 (96)
T ss_dssp SSS
T ss_pred CCC
Confidence 754
No 186
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.68 E-value=2.5e-16 Score=116.24 Aligned_cols=71 Identities=32% Similarity=0.616 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.++|||+|||..+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i 93 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 93 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 44668999999999999999999999999999999999999999999999999999999999999999764
No 187
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=118.52 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
..++|||+|||+++++++|+++|++||.|..|.+.+ ++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998863 57999999999999999999999999999999999987
Q ss_pred CC
Q 023381 191 VP 192 (283)
Q Consensus 191 ~~ 192 (283)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 188
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.68 E-value=3e-18 Score=156.17 Aligned_cols=70 Identities=20% Similarity=0.480 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|.++|++||.|+.|.|+.++.+|.++|||||+|.+.++|.+||..|||..+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i 169 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE
Confidence 3567999999999999999999999999999999999999999999999999999999999999999865
No 189
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.67 E-value=2.4e-16 Score=118.06 Aligned_cols=71 Identities=30% Similarity=0.429 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....++|||+|||+.+++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|.+|++.|||..+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 107 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV 107 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999764
No 190
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=4e-16 Score=128.83 Aligned_cols=85 Identities=21% Similarity=0.461 Sum_probs=80.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
...++|||+|||+++++++|+++|+.||.|..++++++..+|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 46689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 023381 190 EVPRG 194 (283)
Q Consensus 190 ~~~~~ 194 (283)
..+..
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 86544
No 191
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=116.83 Aligned_cols=70 Identities=29% Similarity=0.352 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL 80 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4568999999999999999999999999999999999998999999999999999999999999999764
No 192
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=116.63 Aligned_cols=70 Identities=20% Similarity=0.338 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 90 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL 90 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE
Confidence 3557899999999999999999999999999999999999999999999999999999999999999764
No 193
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=113.97 Aligned_cols=69 Identities=19% Similarity=0.437 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|++||.|..++++.++ +|.++|||||+|.+.++|.+|++.|||..+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 83 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI 83 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456899999999999999999999999999999999998 899999999999999999999999999764
No 194
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=3.4e-16 Score=116.79 Aligned_cols=70 Identities=27% Similarity=0.408 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|+.||.|..++|+.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 92 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI 92 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE
Confidence 4568999999999999999999999999999999999999999999999999999999999999999764
No 195
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=2.3e-16 Score=123.35 Aligned_cols=81 Identities=26% Similarity=0.444 Sum_probs=74.5
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|||+++++++|+++|++||.|..|+++++ ++|||||+|.+.++|.+|+..|||..+.|+.|.|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 33456789999999999999999999999999999999876 5899999999999999999999999999999999
Q ss_pred ecccCC
Q 023381 187 NFPEVP 192 (283)
Q Consensus 187 ~~a~~~ 192 (283)
.++..+
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998754
No 196
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=115.55 Aligned_cols=71 Identities=27% Similarity=0.423 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeec-CCCCCCccEEEEEeCCHHHHHHHHHHc-CCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE-RYTGRSRGFGFVTFETAEDLQSALDAM-NGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~-~~~g~~kg~afV~f~~~~~A~~Al~~l-nG~~~ 282 (283)
....++|||+|||+.+++++|+++|++||.|..|+++.+ +.+|.++|||||+|.+.++|.+|+..| ||..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 345689999999999999999999999999999999999 789999999999999999999999999 88764
No 197
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=112.35 Aligned_cols=79 Identities=28% Similarity=0.439 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
....++|||+|||+++++++|+++|+.||.|..| +.+..+|+ ||||+|.+.++|.+|+. ++|..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 55665665 99999999999999999 999999999999998
Q ss_pred ccCCC
Q 023381 189 PEVPR 193 (283)
Q Consensus 189 a~~~~ 193 (283)
+....
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 76443
No 198
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=115.24 Aligned_cols=69 Identities=29% Similarity=0.495 Sum_probs=65.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~-~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+.++|||+|||+.+++++|+++|++||.|..+ +++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 73 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 56899999999999999999999999999999 9999988999999999999999999999999999764
No 199
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.7e-16 Score=123.39 Aligned_cols=83 Identities=29% Similarity=0.616 Sum_probs=78.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+.+++++|+++|+.||.|..+.++++..+|.++|||||+|.+.++|.+|++.+||..++|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34567799999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccc
Q 023381 188 FPE 190 (283)
Q Consensus 188 ~a~ 190 (283)
++.
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 975
No 200
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=116.21 Aligned_cols=67 Identities=25% Similarity=0.370 Sum_probs=64.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ln 278 (283)
..+.++|||+|||+.+++++|+++|+.||.|..|+++.++.+|.++|||||+|.+.++|.+|+..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 3456899999999999999999999999999999999999999999999999999999999999999
No 201
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=2.1e-16 Score=126.96 Aligned_cols=83 Identities=29% Similarity=0.528 Sum_probs=78.3
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
...+.++|||+|||+.+++++|+++|+.||.|..|.++.+. +|.++|||||+|.+.++|.+|++.++|..|.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cccC
Q 023381 188 FPEV 191 (283)
Q Consensus 188 ~a~~ 191 (283)
++..
T Consensus 163 ~a~~ 166 (177)
T 2f3j_A 163 LVAS 166 (177)
T ss_dssp EESS
T ss_pred EecC
Confidence 9864
No 202
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=116.90 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=62.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+|||+.+++++|+++|++||.|..|+++.++. |.++|||||+|.+.++|.+|+. +||..+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~ 76 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKY 76 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEE
Confidence 357899999999999999999999999999999999986 9999999999999999999998 888654
No 203
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=113.90 Aligned_cols=79 Identities=24% Similarity=0.464 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCC-CccCCceeEE
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG-SQIGGRTVKV 186 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~-i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g-~~i~gr~l~v 186 (283)
..+.++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.+|| ..++|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6666552 479999999999999999999999 9999999999
Q ss_pred ecccCCCC
Q 023381 187 NFPEVPRG 194 (283)
Q Consensus 187 ~~a~~~~~ 194 (283)
.++..+..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99876543
No 204
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.67 E-value=1.3e-16 Score=119.08 Aligned_cols=66 Identities=35% Similarity=0.622 Sum_probs=61.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+|||+|||+.+++++|+++|++||.|.+|+|+.+. +.+||||||+|.+.++|.+|++.|||..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~ 70 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL 70 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEE
Confidence 4579999999999999999999999999999999986 45799999999999999999999999764
No 205
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=8.5e-17 Score=121.57 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCce--EEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVA--SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~--~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
....+|||+|||+++++++|+++|+.| .|. .|+|+++.. |+++|||||+|.+.++|.+|++. ++..|+||.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 456789999999999999999999999 566 899999986 99999999999999999999995 8899999999998
Q ss_pred ccc
Q 023381 188 FPE 190 (283)
Q Consensus 188 ~a~ 190 (283)
.+.
T Consensus 117 ~a~ 119 (126)
T 2hgm_A 117 KSS 119 (126)
T ss_dssp EEC
T ss_pred ECC
Confidence 764
No 206
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=3e-16 Score=116.11 Aligned_cols=75 Identities=25% Similarity=0.548 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 111 EAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 111 ~~~~l~v~nLp~~-~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
..++|||+|||++ +++++|+++|++||.|..|.+ ++|||||+|.+.++|.+|++.|+|..|+|+.|.|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999999 999999999999999999988 4799999999999999999999999999999999998
Q ss_pred cCCC
Q 023381 190 EVPR 193 (283)
Q Consensus 190 ~~~~ 193 (283)
..+.
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 207
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=3.9e-17 Score=125.67 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
...++|||+|||+++++++|+++|++|| |..|+|+++.. |+++|||||+|.+.++|++|+ .+|+..|.||.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4567999999999999999999999999 66999999985 999999999999999999999 58999999999999887
Q ss_pred cCCC
Q 023381 190 EVPR 193 (283)
Q Consensus 190 ~~~~ 193 (283)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6443
No 208
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.66 E-value=2.7e-16 Score=119.77 Aligned_cols=71 Identities=27% Similarity=0.411 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.++|||+|||+.+++++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i 113 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 113 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34668999999999999999999999999999999999999999999999999999999999999999764
No 209
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=114.91 Aligned_cols=69 Identities=25% Similarity=0.407 Sum_probs=64.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCC---CCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY---TGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~---~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+.++|||+|||+.+++++|+++|++||.|..+.++.++. ++.++|||||+|.+.++|.+|+..|||..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV 75 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee
Confidence 567999999999999999999999999999999999886 668999999999999999999999999764
No 210
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=1.8e-16 Score=124.69 Aligned_cols=69 Identities=22% Similarity=0.400 Sum_probs=64.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC--CceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQP--GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+|||+.+++++|+++|+.|| .|..++|+.|+.+|+++|||||+|.+.++|.+|+..|||..+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~ 124 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL 124 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999764
No 211
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.2e-16 Score=113.86 Aligned_cols=68 Identities=40% Similarity=0.623 Sum_probs=64.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|..+.++.+ +|.++|||||+|.+.++|.+|+..|||..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 80 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 46689999999999999999999999999999999988 899999999999999999999999999865
No 212
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.6e-16 Score=114.44 Aligned_cols=68 Identities=28% Similarity=0.493 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcc-CCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQG-QPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
.+.++|||+|||+.+++++|+++|++ ||.|..++++.++ +|.++|||||+|.+.++|.+|++.|||..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 75 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAV 75 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCc
Confidence 45689999999999999999999999 9999999999998 99999999999999999999999999976
No 213
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=111.74 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=60.4
Q ss_pred CeEEEcCCCCCC------CHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGL------TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~------te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
++|||+|||+.+ ++++|+++|++||.|..+++. +.+|+++|||||+|.+.++|.+|++.|||..+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 689999999999 779999999999999999987 45899999999999999999999999999865
No 214
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=114.65 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 82 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI 82 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee
Confidence 4568899999999999999999999999999999999988999999999999999999999999999754
No 215
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.66 E-value=3.3e-16 Score=117.05 Aligned_cols=69 Identities=33% Similarity=0.548 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|||..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~ 73 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL 73 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 356799999999999999999999999999999999998 999999999999999999999999999765
No 216
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.66 E-value=1.3e-16 Score=109.63 Aligned_cols=65 Identities=29% Similarity=0.494 Sum_probs=61.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 217 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++ |||..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~ 65 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI 65 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE
Confidence 58999999999999999999999999999999999899999999999999999999998 888754
No 217
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4e-16 Score=115.95 Aligned_cols=70 Identities=20% Similarity=0.291 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCce--------EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL--------SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|. .++|+.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 4568999999999999999999999999999 699999988999999999999999999999999999765
No 218
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=4.4e-16 Score=113.80 Aligned_cols=69 Identities=23% Similarity=0.524 Sum_probs=64.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.++|||+|||+.+++++|+++|+.|| |..|+++.++.+|.++|||||+|.+.++|.+|+ .|||..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~ 80 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL 80 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE
Confidence 34568999999999999999999999996 999999999999999999999999999999999 8999764
No 219
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=120.48 Aligned_cols=67 Identities=24% Similarity=0.313 Sum_probs=64.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceE--EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS--AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
...++|||+|||+.+++++|+++|++||.|.. |+|+.|+.+|++||||||+|.+. +|.+|+..|||.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 45689999999999999999999999999976 99999999999999999999999 999999999997
No 220
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.65 E-value=2.8e-16 Score=116.23 Aligned_cols=70 Identities=19% Similarity=0.310 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 93 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 93 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999764
No 221
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=1.3e-16 Score=114.75 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=64.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 82 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI 82 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE
Confidence 458999999999999999999999999999999999999999999999999999999999999999764
No 222
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.65 E-value=3.9e-16 Score=110.41 Aligned_cols=64 Identities=31% Similarity=0.685 Sum_probs=61.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ 276 (283)
...++|||+|||+.+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|++.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 4568999999999999999999999999999999999999999999999999999999999976
No 223
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=4.4e-16 Score=114.57 Aligned_cols=69 Identities=30% Similarity=0.470 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|.+|++.|||..+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 95 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL 95 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 456899999999999999999999999999999999998 999999999999999999999999999764
No 224
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=114.89 Aligned_cols=69 Identities=28% Similarity=0.578 Sum_probs=65.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 75 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee
Confidence 347899999999999999999999999999999999998999999999999999999999999999765
No 225
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-15 Score=110.21 Aligned_cols=80 Identities=26% Similarity=0.365 Sum_probs=71.5
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEE
Q 023381 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (283)
Q Consensus 107 ~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v 186 (283)
....+.++|||+|| ++++++|+++|++||.|..|.+. +++|||||+|.+.++|.+|+..|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 33456789999996 89999999999999999999884 56899999999999999999999999999999999
Q ss_pred ecccCCCC
Q 023381 187 NFPEVPRG 194 (283)
Q Consensus 187 ~~a~~~~~ 194 (283)
.++..+..
T Consensus 82 ~~a~~~~~ 89 (97)
T 1x5p_A 82 NIARKQPM 89 (97)
T ss_dssp ECCSSCCC
T ss_pred EECCCCCC
Confidence 99876543
No 226
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6e-16 Score=111.55 Aligned_cols=79 Identities=24% Similarity=0.320 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEE-EEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASA-EIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i-~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
...++|||+|||+++++++|+++|++||.|..+ .++.+..++ .|||+|.+.++|.+|++.+||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356899999999999999999999999999999 477765443 399999999999999999999999999999999
Q ss_pred ccCC
Q 023381 189 PEVP 192 (283)
Q Consensus 189 a~~~ 192 (283)
+...
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8754
No 227
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-15 Score=113.78 Aligned_cols=69 Identities=25% Similarity=0.514 Sum_probs=65.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|+.||.|..++++.++ +|.++|||||+|.+.++|.+|++.|||..+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 91 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFI 91 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456899999999999999999999999999999999998 999999999999999999999999999865
No 228
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=3.4e-16 Score=111.15 Aligned_cols=67 Identities=24% Similarity=0.633 Sum_probs=64.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.++|||+|||+.+++++|+++|+.||.|..++++.++.+|.++|||||+|.+.++|.+|+ .|||..+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~ 72 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF 72 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE
Confidence 468999999999999999999999999999999999989999999999999999999999 8999764
No 229
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=6.5e-16 Score=122.98 Aligned_cols=79 Identities=24% Similarity=0.475 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
..++|||+|||+++++++|+++|++||.|..+.+.++..+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4689999999999999999999999999999999999889999999999999999999999999999999999999986
No 230
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=115.93 Aligned_cols=78 Identities=24% Similarity=0.352 Sum_probs=69.6
Q ss_pred cCCCCCeEEE--cCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCcc-----C
Q 023381 108 ASDEAARLYV--GNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI-----G 180 (283)
Q Consensus 108 ~~~~~~~l~v--~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i-----~ 180 (283)
...+.++||| |||++++++++|+++|++||.|..|.+.. .+|||||+|.+.++|.+|++.|||..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3456789999 77999999999999999999999998753 379999999999999999999999988 6
Q ss_pred CceeEEecccC
Q 023381 181 GRTVKVNFPEV 191 (283)
Q Consensus 181 gr~l~v~~a~~ 191 (283)
|+.|.|.++..
T Consensus 95 g~~l~v~~a~~ 105 (114)
T 2cq2_A 95 KITLYLNFVEK 105 (114)
T ss_dssp EEECEEEEESC
T ss_pred CcEEEEEeccc
Confidence 88999998763
No 231
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=112.58 Aligned_cols=69 Identities=25% Similarity=0.463 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|..++++.++. |.++|||||+|.+.++|.+|++.|||..+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL 82 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4568999999999999999999999999999999999985 99999999999999999999999999764
No 232
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.3e-16 Score=113.59 Aligned_cols=68 Identities=28% Similarity=0.534 Sum_probs=63.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCC-CCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT-GRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~-g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|+.|| |..|.|+.++.+ |.++|||||+|.+.++|.+|+ .|||..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~ 81 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL 81 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe
Confidence 4568999999999999999999999999 999999999887 999999999999999999999 8998764
No 233
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=2.3e-15 Score=118.08 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=70.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCC--ceeEEecc
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNFP 189 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g--r~l~v~~a 189 (283)
..+|||+||++.+++++|+++|++||.|.+|++..+ .++|||||+|.+.++|.+|++.|||..|.| +.|+|.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 456899999999999999999999999999998643 357999999999999999999999999965 99999999
Q ss_pred cCCC
Q 023381 190 EVPR 193 (283)
Q Consensus 190 ~~~~ 193 (283)
+...
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8653
No 234
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=111.25 Aligned_cols=69 Identities=25% Similarity=0.425 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCC-CccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR-SRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~-~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+|||+.+++++|+++|++||.|..+.++.++.++. ++|||||+|.+.++|.+|++.|||..+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI 72 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE
Confidence 357899999999999999999999999999999999987766 899999999999999999999999764
No 235
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.64 E-value=3.1e-16 Score=111.25 Aligned_cols=75 Identities=20% Similarity=0.354 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
...++|||+|||+++++++|+++|++| .|..+++. +++|||||+|.+.++|.+|++.+||..+.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 456899999999999999999999999 99999884 57899999999999999999999999999999999997
Q ss_pred cC
Q 023381 190 EV 191 (283)
Q Consensus 190 ~~ 191 (283)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 236
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=113.49 Aligned_cols=69 Identities=25% Similarity=0.453 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|..++|+.++ +|.++|||||+|.+.++|.+|++.|||..+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 81 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL 81 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 456899999999999999999999999999999999998 699999999999999999999999999764
No 237
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.6e-16 Score=114.73 Aligned_cols=68 Identities=35% Similarity=0.504 Sum_probs=64.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCC
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG 279 (283)
....++|||+|||+.+++++|+++|++||.|..++|+.++.++.++|||||+|.+.++|.+|++.|||
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999998
No 238
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=117.36 Aligned_cols=73 Identities=30% Similarity=0.438 Sum_probs=67.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 210 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 210 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....+.++|||+|||..+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 130 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 130 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3345678999999999999999999999999999999999998999999999999999999999999999754
No 239
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=113.82 Aligned_cols=68 Identities=28% Similarity=0.534 Sum_probs=62.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecC-CCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER-YTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~-~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|+.|| |..++++.++ .+|+++|||||+|.+.++|.+|+ .|||..+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~ 85 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL 85 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE
Confidence 4568999999999999999999999999 9999999998 68999999999999999999999 8999765
No 240
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.64 E-value=1.2e-15 Score=109.04 Aligned_cols=68 Identities=32% Similarity=0.494 Sum_probs=63.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|++||.|..+++..+ +|.++|||||+|.+.++|.+|++.|||..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 73 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKL 73 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 35689999999999999999999999999999999874 789999999999999999999999999764
No 241
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.8e-16 Score=112.84 Aligned_cols=70 Identities=27% Similarity=0.513 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....++|||+|||+.+++++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|+.. ||..+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~ 82 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL 82 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE
Confidence 34668999999999999999999999999999999999999999999999999999999999998 88654
No 242
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=1.4e-15 Score=123.77 Aligned_cols=84 Identities=25% Similarity=0.479 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|||+.+++++|+++|++||.|..+.+.++..+|.++|||||+|.+.++|.+|++.|+|..++|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCC
Q 023381 189 PEVP 192 (283)
Q Consensus 189 a~~~ 192 (283)
+.+.
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 243
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.9e-16 Score=112.78 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=57.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCC
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG 279 (283)
..+.++|||+|||+.+++++|+++|++||.|.+++|+++ ||||||+|.+.++|.+|++.|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcc
Confidence 456789999999999999999999999999999999854 79999999999999999998864
No 244
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.5e-16 Score=112.42 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=61.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|+.|| ++.|+|+.++ +|+++|||||+|.+.++|.+||+ +||..+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~ 79 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANM 79 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeE
Confidence 4567999999999999999999999999 5599999998 89999999999999999999995 788654
No 245
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.63 E-value=6.8e-16 Score=116.97 Aligned_cols=70 Identities=20% Similarity=0.338 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 89 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL 89 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee
Confidence 3467999999999999999999999999999999999998999999999999999999999999999765
No 246
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.3e-15 Score=109.96 Aligned_cols=69 Identities=30% Similarity=0.584 Sum_probs=63.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....++|||+|||+.+++++|+++|++||.|..++++.++. .++|||||+|.+.++|.+|+..|||..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~ 80 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV 80 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34668999999999999999999999999999999998863 3899999999999999999999999764
No 247
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=6.8e-16 Score=109.09 Aligned_cols=72 Identities=35% Similarity=0.695 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc----C-------CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEA----G-------TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~----G-------~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~ 178 (283)
.+.++|||+|||+++++++|+++|++| | .|..+.+.++ +|||||+|.+.++|.+|+ .+||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999988644 799999999999999999 899999
Q ss_pred cCCceeEEec
Q 023381 179 IGGRTVKVNF 188 (283)
Q Consensus 179 i~gr~l~v~~ 188 (283)
+.|+.|+|.+
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 248
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.6e-16 Score=115.85 Aligned_cols=68 Identities=19% Similarity=0.377 Sum_probs=64.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+|||+.+++++|+++|+.||.|..|+++.++.+|.++|||||+|.+.++|.+|+ .|||..+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~ 91 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL 91 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe
Confidence 3479999999999999999999999999999999999999999999999999999999999 9999765
No 249
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=2.2e-15 Score=113.86 Aligned_cols=78 Identities=24% Similarity=0.369 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeE-EEEEECCHHHHHHHHHhhCCCccCC--ceeEEe
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF-GFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVN 187 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~g~~i~g--r~l~v~ 187 (283)
.-..|||+||++.+|+++|+++|++||.|.+|+++.+. +|+ |||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34468899999999999999999999999999987643 577 9999999999999999999999988 899999
Q ss_pred cccCCC
Q 023381 188 FPEVPR 193 (283)
Q Consensus 188 ~a~~~~ 193 (283)
+++...
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 987553
No 250
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.6e-16 Score=107.89 Aligned_cols=63 Identities=35% Similarity=0.589 Sum_probs=60.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ln 278 (283)
++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 479999999999999999999999999999999999899999999999999999999999776
No 251
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=8e-16 Score=118.63 Aligned_cols=71 Identities=27% Similarity=0.431 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....++|||+|||+.+++++|+++|+.||.|..|+++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 109 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI 109 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999764
No 252
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=106.54 Aligned_cols=74 Identities=24% Similarity=0.315 Sum_probs=66.0
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHHhc-CCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCce
Q 023381 110 DEAAR-LYVGNLPYSMTSSS----LAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183 (283)
Q Consensus 110 ~~~~~-l~v~nLp~~~te~~----l~~~F~~~-G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~ 183 (283)
.+..| |||+|||+++++++ |+++|++| |+|..| ++ |+|||.|.+.++|.+|++.|+|..+.||.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 45666 99999999999988 55899999 599988 34 99999999999999999999999999999
Q ss_pred eEEecccCCC
Q 023381 184 VKVNFPEVPR 193 (283)
Q Consensus 184 l~v~~a~~~~ 193 (283)
|+|.+|....
T Consensus 76 i~v~~A~~~s 85 (96)
T 2diu_A 76 IIVSFTPKNR 85 (96)
T ss_dssp CEEESSCCSC
T ss_pred EEEEecCCCc
Confidence 9999987544
No 253
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.63 E-value=2.5e-15 Score=119.04 Aligned_cols=81 Identities=33% Similarity=0.561 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCC--ceeEE
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKV 186 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g--r~l~v 186 (283)
..+.++|||+|||..+++++|+++|++||.|..+.+.++..+|+++|||||+|.+.++|.+|++.|||..+.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3467899999999999999999999999999999999999899999999999999999999999999999988 99999
Q ss_pred ecc
Q 023381 187 NFP 189 (283)
Q Consensus 187 ~~a 189 (283)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 254
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=6.7e-16 Score=122.31 Aligned_cols=80 Identities=25% Similarity=0.478 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
+.++|||+|||+++++++|+++|+.||.|..+.++++..+|.++|||||+|.+.++|.+|++ ++|..++|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45689999999999999999999999999999999998899999999999999999999998 79999999999999986
Q ss_pred C
Q 023381 191 V 191 (283)
Q Consensus 191 ~ 191 (283)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 255
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=110.49 Aligned_cols=69 Identities=30% Similarity=0.365 Sum_probs=63.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....++|||+|||+.+++++|+++|++||.|..|+++.++. .++|||||+|.+.++|.+|++.|||..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~ 80 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKI 80 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCc
Confidence 34568999999999999999999999999999999998853 3689999999999999999999999764
No 256
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=111.58 Aligned_cols=68 Identities=21% Similarity=0.284 Sum_probs=62.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceE-EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|+.||.|.. ++|+.+ .+|+++|||||+|.+.++|.+|+.. ||..+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~ 81 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI 81 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh
Confidence 45689999999999999999999999999997 888888 6899999999999999999999997 77653
No 257
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=113.44 Aligned_cols=78 Identities=14% Similarity=0.262 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCC---CCceeEEEEEECCHHHHHHHHHhhCCCccCCceeE
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT---DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~ 185 (283)
....++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.++ .++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34678999999999999999999999999999 888887766 7999999999999999999999884 36777777
Q ss_pred Eecc
Q 023381 186 VNFP 189 (283)
Q Consensus 186 v~~a 189 (283)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 7643
No 258
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=110.34 Aligned_cols=65 Identities=29% Similarity=0.446 Sum_probs=61.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ 276 (283)
..+.++|||+|||+.+++++|+++|+.||.|..++++.++.+|.++|||||+|.+.++|.+|+..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 34568999999999999999999999999999999999998999999999999999999999986
No 259
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=6.3e-16 Score=115.16 Aligned_cols=68 Identities=18% Similarity=0.357 Sum_probs=62.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCC---CCCccEEEEEeCCHHHHHHHHHHc---CCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT---GRSRGFGFVTFETAEDLQSALDAM---NGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~---g~~kg~afV~f~~~~~A~~Al~~l---nG~~~ 282 (283)
..++|||+|||+.+++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.| ||..+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 468899999999999999999999999999 888888777 799999999999999999999998 88754
No 260
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.8e-16 Score=114.38 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=63.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCc-eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGL-LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|+.||.| ..|+|+.++ +|+++|||||+|.+.++|.+||+. ||..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~ 81 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKL 81 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCcc
Confidence 456899999999999999999999999999 899999998 999999999999999999999986 88654
No 261
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1e-15 Score=106.83 Aligned_cols=63 Identities=21% Similarity=0.234 Sum_probs=58.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...-|+|+||++.+|+++|+++|.+||.|..+.+.. +||||||+|.+.++|.+|++.|||..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l 68 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVL 68 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEE
Confidence 356799999999999999999999999999999864 699999999999999999999999764
No 262
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.62 E-value=2.4e-16 Score=112.28 Aligned_cols=66 Identities=27% Similarity=0.560 Sum_probs=63.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.+ |.+|+..|||..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~ 67 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF 67 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE
Confidence 57999999999999999999999999999999999999999999999999999 9999999999764
No 263
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=107.62 Aligned_cols=67 Identities=16% Similarity=0.296 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|+.| .|..++++.+ .+|+++|||||+|.+.++|.+|+. |||..+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~ 74 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYM 74 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCcee
Confidence 356899999999999999999999999 9999999999 689999999999999999999999 999764
No 264
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=8.8e-16 Score=112.65 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCCCC------CHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGL------TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+|||+.+ ++++|+++|++||.|..+.++ +.+|+++|||||+|.+.++|.+|+..|||..+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 45799999999999 789999999999999999988 45899999999999999999999999999765
No 265
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.62 E-value=4.2e-15 Score=112.31 Aligned_cols=70 Identities=30% Similarity=0.460 Sum_probs=65.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....++|||+|||+.+++++|+++|+.||.|..+++..++ +|.++|||||+|.+.++|.+|++.|||..+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 101 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL 101 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3456899999999999999999999999999999999998 999999999999999999999999999754
No 266
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=2.2e-15 Score=122.49 Aligned_cols=84 Identities=20% Similarity=0.373 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
...++|||+|||+++++++|+++|+.||.|..|.++++..+|+++|||||+|.+.++|.+|+.. +|..++|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3568999999999999999999999999999999999998999999999999999999999986 899999999999998
Q ss_pred cCCCC
Q 023381 190 EVPRG 194 (283)
Q Consensus 190 ~~~~~ 194 (283)
..+..
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 75543
No 267
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=110.35 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=62.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLR----DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+ ++|++||.|..++++.++.+ +|||||+|.+.++|.+|++.|||..+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~ 77 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI 77 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 356799999999999999999 99999999999999988755 89999999999999999999999864
No 268
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9e-16 Score=116.05 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=64.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....++|||+|||+.+++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||. |||..+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 91 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM 91 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE
Confidence 3456899999999999999999999999999997777777799999999999999999999999 999764
No 269
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=112.28 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHhccCCCceEEEEeecCCCC---CCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLR---DAFQGQPGLLSAKVIFERYTG---RSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~~~i~~~~~~g---~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+ ++|++||.|..+.++.+..++ .++|||||+|.+.++|.+|++.|||..+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 356799999999999999999 999999999999999888654 5569999999999999999999999864
No 270
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=1.3e-15 Score=113.61 Aligned_cols=75 Identities=27% Similarity=0.379 Sum_probs=65.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCce-----e
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT-----V 184 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~-----l 184 (283)
....+|||+|||+++++++|+++|.+||.|..|.++.+ |||||+|.+.++|.+|++.|||..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34679999999999999999999999999999999755 99999999999999999999999999999 6
Q ss_pred EEecccC
Q 023381 185 KVNFPEV 191 (283)
Q Consensus 185 ~v~~a~~ 191 (283)
.|..+..
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 6665543
No 271
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=1.3e-15 Score=108.29 Aligned_cols=76 Identities=26% Similarity=0.405 Sum_probs=62.3
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCc--cCCceeE
Q 023381 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ--IGGRTVK 185 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~--i~gr~l~ 185 (283)
...+..+|||+|||+++++++|+++|++||.|..|+++++ ++|||||+|.+.++|.+ ++|.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3457789999999999999999999999999999999864 69999999999999883 45554 4599999
Q ss_pred EecccCC
Q 023381 186 VNFPEVP 192 (283)
Q Consensus 186 v~~a~~~ 192 (283)
|.++.++
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9987643
No 272
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=9.2e-16 Score=117.60 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=63.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCC---ceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPG---LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+|++ |||..+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 45689999999999999999999999999 89999999986 9999999999999999999999 998754
No 273
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.61 E-value=2.2e-15 Score=124.58 Aligned_cols=79 Identities=28% Similarity=0.492 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
...+|||+|||+.+++++|+++|+.||.|..++++++. +.++|||||+|.+.++|.+|++.|||..|+||.|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45689999999999999999999999999999999985 5579999999999999999999999999999999999986
Q ss_pred C
Q 023381 191 V 191 (283)
Q Consensus 191 ~ 191 (283)
.
T Consensus 180 ~ 180 (213)
T 4f02_A 180 S 180 (213)
T ss_dssp C
T ss_pred C
Confidence 4
No 274
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=112.60 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=60.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+|||+|||+.+++++|+++|+.| .|..|+|+.++. |+++|||||+|.+.++|.+|+ .|||..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~ 80 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLM 80 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeE
Confidence 4689999999999999999999999 899999999985 999999999999999999999 6888754
No 275
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=3.9e-15 Score=117.58 Aligned_cols=80 Identities=38% Similarity=0.630 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCce--eEEe
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT--VKVN 187 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~--l~v~ 187 (283)
...++|||+|||+.+++++|+++|++||.|..+++.++..+|.++|||||+|.+.++|.+|++.|||..+.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 35678999999999999999999999999999999999989999999999999999999999999999999976 7777
Q ss_pred cc
Q 023381 188 FP 189 (283)
Q Consensus 188 ~a 189 (283)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 276
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=9.5e-16 Score=112.87 Aligned_cols=68 Identities=24% Similarity=0.347 Sum_probs=63.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCC---ceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPG---LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+|+. |||..+
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~ 79 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM 79 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee
Confidence 45689999999999999999999999888 89999999986 9999999999999999999999 898654
No 277
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=3.8e-15 Score=109.08 Aligned_cols=82 Identities=22% Similarity=0.176 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHHhcCCceEEEEEecCCC-CCceeEEEEEECCHHHHHHHHHhhCCCccCCc
Q 023381 109 SDEAARLYVGNLPY-----SMTSSSLAEVFAEAGTVASAEIVYDRVT-DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR 182 (283)
Q Consensus 109 ~~~~~~l~v~nLp~-----~~te~~l~~~F~~~G~i~~i~i~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr 182 (283)
..+.++|+|.||.. +-++++|+++|++||.|.+|.|.++..+ ++++|||||+|.+.++|.+|++.|||..++||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45788999999963 2478999999999999999999988654 68999999999999999999999999999999
Q ss_pred eeEEeccc
Q 023381 183 TVKVNFPE 190 (283)
Q Consensus 183 ~l~v~~a~ 190 (283)
.|.|.++.
T Consensus 85 ~i~v~~a~ 92 (105)
T 2pe8_A 85 VVKACFYN 92 (105)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999875
No 278
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=2.1e-15 Score=118.58 Aligned_cols=70 Identities=20% Similarity=0.367 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 106 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL 106 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4568999999999999999999999999999999999999999999999999999999999999999764
No 279
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=1.6e-15 Score=113.63 Aligned_cols=68 Identities=19% Similarity=0.321 Sum_probs=63.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCC---ceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPG---LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+|++ |||..+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 35688999999999999999999999999 89999999986 9999999999999999999999 998754
No 280
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=1.4e-15 Score=112.43 Aligned_cols=66 Identities=35% Similarity=0.568 Sum_probs=60.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ln 278 (283)
...++|||+|||+.+++++|+++|+.||.|..|+++.++.+|.++|||||+|.+.++|.+|++.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 456899999999999999999999999999999999999999999999999999999999998653
No 281
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.61 E-value=4e-15 Score=118.55 Aligned_cols=79 Identities=24% Similarity=0.411 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccC---CceeEEe
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG---GRTVKVN 187 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~---gr~l~v~ 187 (283)
..++|||+|||+++++++|+++|+.||.|..+.+.++. +|+++|||||+|.+.++|.+|++.|||..+. |+.|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56789999999999999999999999999999999987 6999999999999999999999999998776 4999999
Q ss_pred ccc
Q 023381 188 FPE 190 (283)
Q Consensus 188 ~a~ 190 (283)
+|.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 282
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.61 E-value=1.3e-15 Score=115.04 Aligned_cols=67 Identities=22% Similarity=0.579 Sum_probs=64.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.++|||+|||+.+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|+ .|||..+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~ 102 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF 102 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE
Confidence 479999999999999999999999999999999999989999999999999999999999 7999764
No 283
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=112.62 Aligned_cols=68 Identities=29% Similarity=0.484 Sum_probs=63.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+|||+.+++++|+++|+.||.|..|+|+.++.+|.++|||||+|.+.++|.+|++. ||..+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~ 93 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI 93 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE
Confidence 347999999999999999999999999999999999999999999999999999999999987 77653
No 284
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=6.4e-16 Score=118.88 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=61.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+++++++|+++|++|| |+.|+|+.++. |+++|||||+|.+.++|.+|| .+||..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l 110 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANM 110 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEE
Confidence 3567999999999999999999999999 77999999985 999999999999999999999 7888654
No 285
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.2e-15 Score=108.65 Aligned_cols=61 Identities=8% Similarity=-0.010 Sum_probs=55.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ln 278 (283)
..+.++|||+|||+.+++++|+++|++||.|..++++.+ ||||||+|.+.++|.+|++.||
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~ 72 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhc
Confidence 346789999999999999999999999999999998753 8999999999999999999764
No 286
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=8.1e-15 Score=110.22 Aligned_cols=74 Identities=27% Similarity=0.335 Sum_probs=66.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeE-EEEEECCHHHHHHHHHhhCCCccCC--ceeEEeccc
Q 023381 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF-GFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNFPE 190 (283)
Q Consensus 114 ~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~g~~i~g--r~l~v~~a~ 190 (283)
.|||+||++.+++++|+++|++||.|..|+++.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4789999999999999999999999999999642 285 9999999999999999999999988 689999987
Q ss_pred CCC
Q 023381 191 VPR 193 (283)
Q Consensus 191 ~~~ 193 (283)
...
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 553
No 287
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-15 Score=110.37 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=57.3
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 212 VDSPHKIYAGNLGW-GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 212 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
..+.++|||+|||+ .+++++|+++|++||.|.+++++++ +|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~ 75 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTT 75 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCC
Confidence 34678999999999 9999999999999999999999854 589999999999999999988764
No 288
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=3.2e-15 Score=113.27 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=60.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLR----DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +|+++|||||+|.+.++|..|+..|||..+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l 97 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF 97 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 456899999999999999876 6999999999988753 688999999999999999999999999865
No 289
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=111.79 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=61.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCC-ceEEEEe-ecCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVI-FERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~~~i~-~~~~~g~~kg~afV~f~~~~~A~~Al~~ln 278 (283)
+.++|||+|||+.+++++|+++|+.||. |..+.++ .++.+|.++|||||+|.+.++|.+|++.||
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 4679999999999999999999999998 9999998 788889999999999999999999999995
No 290
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=6.9e-16 Score=105.93 Aligned_cols=64 Identities=25% Similarity=0.433 Sum_probs=60.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 217 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++. +|..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~ 64 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHN 64 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCe
Confidence 589999999999999999999999999999999998999999999999999999999985 6543
No 291
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=5.6e-15 Score=120.25 Aligned_cols=79 Identities=19% Similarity=0.298 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
..++|||+|||+++++++|+++|++||.|..|+++++. +|+++|||||+|.+.++|.+|++.+ +..++||.|.|.++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35799999999999999999999999999999999987 6999999999999999999999864 569999999999866
Q ss_pred C
Q 023381 191 V 191 (283)
Q Consensus 191 ~ 191 (283)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 292
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.7e-15 Score=110.06 Aligned_cols=69 Identities=30% Similarity=0.582 Sum_probs=63.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....++|||+|||..+++++|+++|++||.|..++++.++ +.++|||||+|.+.++|.+|++.|||..+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~ 94 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVV 94 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3466899999999999999999999999999999999885 45899999999999999999999999764
No 293
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.59 E-value=3e-15 Score=108.01 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=57.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
..+.++|||+|||+.+++++|+++|++||.|.++++++ .||+|||+|.+.++|.+|++.|||.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCC
Confidence 34678999999999999999999999999999999874 4799999999999999999998875
No 294
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.3e-15 Score=111.46 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=57.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCC
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG 279 (283)
..+.++|||+|||+.+++++|+++|++||.|.+++++.+ ||||||+|.+.++|.+|++.|||
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~ 89 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTS 89 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhcc
Confidence 345689999999999999999999999999999999864 79999999999999999998875
No 295
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.59 E-value=1.7e-15 Score=126.61 Aligned_cols=69 Identities=25% Similarity=0.404 Sum_probs=64.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC--CceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQP--GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+||++.+++++|+++|++|| .|+.|+|+.++.+|++||||||+|.+.++|.+||+.|||..+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~ 137 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL 137 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999865
No 296
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=107.10 Aligned_cols=67 Identities=22% Similarity=0.349 Sum_probs=61.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++.|||..+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 86 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDY 86 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4568999999999999999999999999999999865 456899999999999999999999999764
No 297
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5e-15 Score=108.27 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=56.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
..+.++|||+|||+.+++++|+++|++||.|..++++.+ ||||||+|.+.++|.+|++.|||.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~ 74 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADV 74 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccC
Confidence 345689999999999999999999999999999998742 799999999999999999987653
No 298
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.6e-15 Score=107.58 Aligned_cols=78 Identities=26% Similarity=0.335 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.+.++|||+|||+++++++|+++|++||.|..|+++++ ++|||||+|.+.++|++|.. .+..+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 45789999999999999999999999999999999754 68999999999999976543 234568999999998
Q ss_pred cCCCC
Q 023381 190 EVPRG 194 (283)
Q Consensus 190 ~~~~~ 194 (283)
..+..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75543
No 299
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.58 E-value=6.5e-15 Score=110.77 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEec
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~ 188 (283)
..+.++|||+|+ ++++++|+++|++||.|..|.+. +++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999995 69999999999999999999985 5689999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023381 189 PEVPRG 194 (283)
Q Consensus 189 a~~~~~ 194 (283)
+..+..
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 875543
No 300
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=113.43 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=60.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCc----eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGL----LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i----~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...+|||+|||+.+++++|+++|+.||.| ..|+|+.+. +|+++|||||+|.+.++|.+|++. ||..+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 45799999999999999999999999875 689999885 899999999999999999999985 77643
No 301
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.9e-15 Score=106.97 Aligned_cols=67 Identities=25% Similarity=0.435 Sum_probs=60.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.++|||+|||+.+++++|+++|++||.| +++.+ .+|+++|||||+|.+.++|.+|+..|||..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 78 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI 78 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3467899999999999999999999999977 55665 5899999999999999999999999999764
No 302
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=107.38 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=58.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|..+.|+.+ |||||+|.+.++|.+||+.|||..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~ 75 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF 75 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCc
Confidence 35689999999999999999999999999999999865 8999999999999999999999764
No 303
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.57 E-value=3e-15 Score=110.69 Aligned_cols=65 Identities=25% Similarity=0.213 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC-CceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...+|||+|||+.+++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|.+|++.|||..+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l 92 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEF 92 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 457999999999999999999999999 899998853 35799999999999999999999999764
No 304
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.1e-15 Score=111.36 Aligned_cols=67 Identities=9% Similarity=0.084 Sum_probs=60.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCC----HHH----HHHHHH--HcCCcc
Q 023381 216 HKIYAGNL----GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET----AED----LQSALD--AMNGVV 281 (283)
Q Consensus 216 ~~l~V~nL----p~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~----~~~----A~~Al~--~lnG~~ 281 (283)
..|||+|| |+.+++++|+++|+.||.|..+.++.|+.||+++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 433 889988 788875
Q ss_pred c
Q 023381 282 R 282 (283)
Q Consensus 282 ~ 282 (283)
+
T Consensus 83 I 83 (136)
T 2j8a_A 83 I 83 (136)
T ss_dssp E
T ss_pred e
Confidence 4
No 305
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=105.08 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=59.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.++|||+|||+.+++++|+++|++||.|..+++.++ +|||||+|.+.++|.+|++.|||..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~ 76 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL 76 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 346689999999999999999999999999999998743 79999999999999999999999764
No 306
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.56 E-value=1.4e-15 Score=110.93 Aligned_cols=67 Identities=27% Similarity=0.557 Sum_probs=62.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHH---HcCCcc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD---AMNGVV 281 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~---~lnG~~ 281 (283)
..++|||+|||+.+++++|+++|+.||.|..++++.++ +|.++|||||+|.+.++|.+|+. .|+|..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~ 77 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKK 77 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEE
Confidence 35789999999999999999999999999999999998 99999999999999999999999 676653
No 307
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.2e-15 Score=111.35 Aligned_cols=70 Identities=29% Similarity=0.350 Sum_probs=60.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 92 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL 92 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4568999999999999999999999999995443333333889999999999999999999999999764
No 308
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-15 Score=111.25 Aligned_cols=67 Identities=31% Similarity=0.513 Sum_probs=62.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+|||+.+++++|+++|+.||.|.. .++.+..+|.++|||||+|.+.++|.+|++ |||..+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~ 82 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV 82 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE
Confidence 4679999999999999999999999999988 777777789999999999999999999998 998764
No 309
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=7.6e-15 Score=108.33 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=56.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCC
Q 023381 212 VDSPHKIYAGNLGWG-LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG 279 (283)
..+.++|||+|||+. +++++|+++|++||.|.++++++ +||||||+|.+.++|.+|++.|||
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhcc
Confidence 456789999999998 99999999999999999999963 489999999999999999998764
No 310
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.8e-14 Score=104.89 Aligned_cols=68 Identities=31% Similarity=0.580 Sum_probs=61.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.++|||+|||+.+++++|+++|+.| ..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 79 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 3466899999999999999999999977 4788888888999999999999999999999999999764
No 311
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=104.82 Aligned_cols=64 Identities=17% Similarity=0.344 Sum_probs=58.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|++.|||..+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~ 78 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPL 78 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 45689999999999999999999999999999998743 78999999999999999999999764
No 312
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=1.7e-14 Score=107.41 Aligned_cols=67 Identities=22% Similarity=0.352 Sum_probs=61.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|+.||.|..+.++.+ +.++|||||+|.+.++|.+|+..|||..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 72 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNV 72 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 35689999999999999999999999999999999864 45699999999999999999999999865
No 313
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=102.28 Aligned_cols=62 Identities=24% Similarity=0.413 Sum_probs=57.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|++||.|..+.++ +|||||+|.+.++|.+|++.|||..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~ 67 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKL 67 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCcc
Confidence 456899999999999999999999999999999987 68999999999999999999999754
No 314
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.55 E-value=9.3e-15 Score=110.33 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=59.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCce--EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL--SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
...++|||+|||+.+++++|+++|+.| .|+ .|+|+.++. |+++|||||+|.+.++|.+|++. +|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~ 106 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKE 106 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCC
Confidence 356789999999999999999999999 677 899999986 99999999999999999999985 554
No 315
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.7e-14 Score=100.35 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=58.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHc-CCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM-NGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~l-nG~~~ 282 (283)
...++|||+|||..+++++|+++|++||.|..+++.. ++|||||+|.+.++|.+|++.| ||..+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~ 74 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIV 74 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeE
Confidence 4568999999999999999999999999999999985 3799999999999999999988 87654
No 316
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=4.4e-16 Score=116.34 Aligned_cols=70 Identities=21% Similarity=0.334 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS--------AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|++||.|.. ++++.++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 35678999999999999999999999999999 99999988999999999999999999999999999764
No 317
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.5e-15 Score=108.81 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=57.7
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYA--GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V--~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++||| +||++.+++++|+++|++||.|..+.++. .||||||+|.+.++|.+|++.|||+.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45678999 77999999999999999999999988753 379999999999999999999999854
No 318
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.4e-14 Score=104.01 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=58.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+|||..+++++|+++|++||.|..+++. +++|||||+|.+.++|.+|+..|||..+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 88 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPF 88 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 45799999999999999999999999999999987 4589999999999999999999999764
No 319
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3e-14 Score=102.79 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=58.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|. +.++. +.++|||||+|.+.++|.+|++.|||..+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 81 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRL 81 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCS
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3468999999999999999999999999997 66664 46799999999999999999999999865
No 320
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.54 E-value=1.5e-14 Score=116.00 Aligned_cols=70 Identities=30% Similarity=0.460 Sum_probs=65.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
....++|||+|||+.+++++|+++|+.||.|+.|.|+.++ +|.++|||||+|.+.++|.+|++.|||..+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l 154 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL 154 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3456899999999999999999999999999999999998 899999999999999999999999999754
No 321
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.53 E-value=1.1e-14 Score=108.61 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=56.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+|||+.+++++|+++|++||.|..+.|+.+ |||||+|.+.++|.+||+.|||..+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~ 76 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF 76 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4578999999999999999999999999999999755 8999999999999999999999865
No 322
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.53 E-value=2.6e-14 Score=105.28 Aligned_cols=62 Identities=23% Similarity=0.397 Sum_probs=58.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|||..+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF 90 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 456899999999999999999999999999999987 79999999999999999999999764
No 323
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.53 E-value=3e-14 Score=102.86 Aligned_cols=63 Identities=16% Similarity=0.415 Sum_probs=58.0
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGW-GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.++|||+|||+ .+++++|+++|++||.|..+++. +|||||+|.+.++|.+|+..|||..+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34678999999998 99999999999999999999983 79999999999999999999999764
No 324
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=5.7e-15 Score=106.54 Aligned_cols=67 Identities=27% Similarity=0.359 Sum_probs=61.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLR----DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+ ++|++||.|..+.+.. +|.++|||||+|.+.++|.+|++.|||..+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 456899999999999999999 9999999999998873 578899999999999999999999999764
No 325
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.53 E-value=2.3e-14 Score=105.85 Aligned_cols=61 Identities=20% Similarity=0.389 Sum_probs=56.9
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWG-LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.++|.+|++.|||..+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~ 87 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL 87 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4579999999999 999999999999999999998 489999999999999999999999764
No 326
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.53 E-value=1.4e-14 Score=115.70 Aligned_cols=78 Identities=24% Similarity=0.443 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEecc
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a 189 (283)
.+.++|||+|||+++++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|++.|+|..++|+.|.|.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 356799999999999999999999999988766 447899999999999999999999999999999999999998
Q ss_pred cCC
Q 023381 190 EVP 192 (283)
Q Consensus 190 ~~~ 192 (283)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 327
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.1e-14 Score=102.52 Aligned_cols=62 Identities=16% Similarity=0.437 Sum_probs=57.3
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGW-GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|||..+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~ 70 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMN 70 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee
Confidence 4578999999998 99999999999999999999984 78999999999999999999999764
No 328
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=106.79 Aligned_cols=62 Identities=16% Similarity=0.057 Sum_probs=57.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.++|||+|||+.+++++|+++|++||.|..|.++. ++|||||+|.+.++|.+|++.|||..+
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~ 71 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF 71 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 46899999999999999999999999999998863 578999999999999999999999764
No 329
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.4e-14 Score=100.89 Aligned_cols=62 Identities=24% Similarity=0.417 Sum_probs=57.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|..+.++ ++||||+|.+.++|.+|++.|||..+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~ 69 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEF 69 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCee
Confidence 456899999999999999999999999999999987 45999999999999999999999765
No 330
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.4e-14 Score=105.57 Aligned_cols=64 Identities=30% Similarity=0.513 Sum_probs=59.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||..+++++|+++|++||.|..++++.+ +|||||+|.+.++|.+|+..|||..+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~ 86 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI 86 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 35689999999999999999999999999999999865 79999999999999999999999764
No 331
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8e-14 Score=100.90 Aligned_cols=63 Identities=29% Similarity=0.428 Sum_probs=57.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccC--CCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQ--PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+..|||..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 3466899999999999999999999999 999988864 67999999999999999999999865
No 332
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=105.50 Aligned_cols=62 Identities=34% Similarity=0.506 Sum_probs=57.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
++|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+|.+.++|.+|++.|||..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~ 62 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI 62 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE
Confidence 47999999999999999999999999999999876 689999999999999999999988754
No 333
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=2.7e-14 Score=119.17 Aligned_cols=79 Identities=22% Similarity=0.331 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCcc
Q 023381 109 SDEAARLYVGNLPYSM---------TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI 179 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~---------te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i 179 (283)
....++|||+||+..+ ++++|+++|++||.|..|+++. ++|||||+|.+.++|..|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 7999999999999999999985 379999999999999999999999999
Q ss_pred ------------CCceeEEecccCCC
Q 023381 180 ------------GGRTVKVNFPEVPR 193 (283)
Q Consensus 180 ------------~gr~l~v~~a~~~~ 193 (283)
.|+.|.|.||....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997543
No 334
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.8e-14 Score=100.76 Aligned_cols=62 Identities=29% Similarity=0.519 Sum_probs=57.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|||+.+++++|+++|++||.|..++++ +|||||+|.+.++|.+|++.|||..+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~ 68 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEV 68 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456899999999999999999999999999999987 45999999999999999999999764
No 335
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.50 E-value=4.5e-14 Score=103.04 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=57.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|++||.|..+.++ +|||||+|.+.++|.+|++.|||..+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~ 70 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDL 70 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCcc
Confidence 456899999999999999999999999999999986 56999999999999999999999764
No 336
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.50 E-value=6.7e-14 Score=105.72 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=56.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccE-EEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~-afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+|||+||++.+++++|+++|++||.|.+|+++.+. +|+ |||+|.+.++|.+|++.|||..+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i 91 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNI 91 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCee
Confidence 468899999999999999999999999999987643 677 99999999999999999999865
No 337
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.49 E-value=9e-15 Score=113.29 Aligned_cols=70 Identities=24% Similarity=0.334 Sum_probs=59.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEE--E---eecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAK--V---IFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~--i---~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|||+|||+.+++++|+++|+.||.|..+. + +....+|.++|||||+|.+.++|.+|+..|||..+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 3568999999999999999999999999998741 1 11123789999999999999999999999999865
No 338
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=1.7e-14 Score=103.76 Aligned_cols=64 Identities=20% Similarity=0.466 Sum_probs=58.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+.++|||+|||+.+++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 78 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 78 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 56899999999999999999999999988766 34788999999999999999999999998754
No 339
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.48 E-value=6.1e-14 Score=99.56 Aligned_cols=55 Identities=24% Similarity=0.305 Sum_probs=49.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHH
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~ 272 (283)
.+..+|||+|||+.+++++|+++|++||.|.+++++.+ +||||||+|.+.++|.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS 63 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH
Confidence 46689999999999999999999999999999999864 69999999999999984
No 340
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.48 E-value=7e-14 Score=102.34 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=70.9
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHHhcCCceEEEEEecCCC--CCceeEEEEEECCHHHHHHHHHhhCCC
Q 023381 110 DEAARLYVGNL--PYSMT--------SSSLAEVFAEAGTVASAEIVYDRVT--DRSRGFGFVTMGSVEEAKEAIRLFDGS 177 (283)
Q Consensus 110 ~~~~~l~v~nL--p~~~t--------e~~l~~~F~~~G~i~~i~i~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~g~ 177 (283)
.+++.|.+.|+ |.+.. +++|+++|++||.|.+|.|.++..+ ++++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47889999998 43443 3689999999999999999988754 468999999999999999999999999
Q ss_pred ccCCceeEEeccc
Q 023381 178 QIGGRTVKVNFPE 190 (283)
Q Consensus 178 ~i~gr~l~v~~a~ 190 (283)
.++||.|.|.+..
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999865
No 341
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.48 E-value=6.8e-14 Score=109.66 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=58.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+|||+||++.+++++|+++|++||.|.+|++..+ ..+|||||+|.+.++|.+|++.|||..+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 357899999999999999999999999999998643 2578999999999999999999999865
No 342
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=1.3e-14 Score=106.16 Aligned_cols=72 Identities=15% Similarity=0.282 Sum_probs=62.4
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCcee
Q 023381 117 VGNLPYSMTSSSLAEVF------------AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (283)
Q Consensus 117 v~nLp~~~te~~l~~~F------------~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l 184 (283)
+.+||+.+++++|++.| ++||.|.+|.+.++. +++++|||||+|.+.++|.+|++.|||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666666776666555 999999999999877 58899999999999999999999999999999999
Q ss_pred EEecc
Q 023381 185 KVNFP 189 (283)
Q Consensus 185 ~v~~a 189 (283)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 343
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=98.60 Aligned_cols=63 Identities=14% Similarity=0.245 Sum_probs=56.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+|||+.+++++|+++|++||.|..| +.++.+|. ||||+|.+.++|.+|+. |||..+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~ 69 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL 69 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE
Confidence 34789999999999999999999999999987 56665665 99999999999999999 999764
No 344
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=1.3e-13 Score=118.48 Aligned_cols=76 Identities=21% Similarity=0.325 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccC-CceeEEec
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG-GRTVKVNF 188 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~-gr~l~v~~ 188 (283)
.+.++|||+|||.++++++|+++|++||.|..|+++.++ +|||||+|.+.++|.+|++.|||..+. |+.|+|.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 457899999999999999999999999999999998654 699999999999999999999999999 99999999
Q ss_pred cc
Q 023381 189 PE 190 (283)
Q Consensus 189 a~ 190 (283)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 75
No 345
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.48 E-value=1.4e-13 Score=100.75 Aligned_cols=70 Identities=11% Similarity=-0.027 Sum_probs=61.4
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhccCCCceEEEEeecCCC-CCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGW-----GLTSQGLRDAFQGQPGLLSAKVIFERYT-GRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~i~~~~i~~~~~~-g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.+.++|+|.||.. +-++++|++.|++||.|..+.|+.++.+ +.++|+|||+|.+.++|.+|++.|||..|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF 81 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 3567899999973 2378999999999999999999998754 68899999999999999999999999876
No 346
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=7e-14 Score=99.01 Aligned_cols=62 Identities=23% Similarity=0.216 Sum_probs=57.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+|||+.+++++|+++|++| .|..+++. +++|||||+|.+.++|.+|++.|||..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 65 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSF 65 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 45789999999999999999999999 99999884 5689999999999999999999999764
No 347
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=2.7e-13 Score=101.88 Aligned_cols=61 Identities=21% Similarity=0.152 Sum_probs=54.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccE-EEEEeCCHHHHHHHHHHcCCccc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~-afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..|||+||++.+++++|+++|++||.|..|+|+. + +|| |||+|.+.++|..|++.|||..+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3468999999999999999999999999999864 2 386 99999999999999999999864
No 348
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.1e-13 Score=100.11 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=69.6
Q ss_pred cCCCCCeEEEcCCCCCCC-----------HHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCC
Q 023381 108 ASDEAARLYVGNLPYSMT-----------SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~~t-----------e~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g 176 (283)
...+.++|+|.||..... +++|+++|++||.|..|.| .+. .++|||||+|.+.++|.+|++.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 455788999999944332 5799999999999999966 443 3799999999999999999999999
Q ss_pred CccCCceeEEecccCC
Q 023381 177 SQIGGRTVKVNFPEVP 192 (283)
Q Consensus 177 ~~i~gr~l~v~~a~~~ 192 (283)
..++||.|.|.++...
T Consensus 87 ~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 87 RWFGGRQITAQAWDGT 102 (112)
T ss_dssp CEETTEECEEEECCSC
T ss_pred CEECCcEEEEEEeCCC
Confidence 9999999999998754
No 349
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=9.6e-14 Score=99.83 Aligned_cols=65 Identities=22% Similarity=0.148 Sum_probs=58.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEE-EeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAK-VIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~-i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+|||+.+++++|+++|++||.|..++ ++.++.+| .|||+|.+.++|.+|+..|||..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~ 79 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQL 79 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEE
Confidence 457899999999999999999999999999994 88776543 399999999999999999999764
No 350
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3e-13 Score=97.51 Aligned_cols=62 Identities=24% Similarity=0.345 Sum_probs=56.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|+ .+++++|+++|++||.|..|.+. .++|||||+|.+.++|.+|+..|||..+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 74 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV 74 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 45689999996 89999999999999999999984 5689999999999999999999999764
No 351
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.47 E-value=2.8e-13 Score=110.13 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=79.2
Q ss_pred CHHHHHHHHHhh--CCCccCCceeEEecccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCC
Q 023381 163 SVEEAKEAIRLF--DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP 240 (283)
Q Consensus 163 ~~~~a~~a~~~l--~g~~i~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G 240 (283)
+.+.+..|++.. ....+.+....|......+...... ........++|||+|||+.+++++|+++|++||
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~--------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G 134 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTD--------EYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKG 134 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCH--------HHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSC
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccch--------hhhhccccCEEEecCCCCcCCHHHHHHHHhcCC
Confidence 567788888866 4556666666665542111000000 000011247899999999999999999999999
Q ss_pred CceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCC
Q 023381 241 GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (283)
Q Consensus 241 ~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG 279 (283)
.|..|++.++. +|.++|||||+|.+.++|.+|+..+++
T Consensus 135 ~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~ 172 (193)
T 2voo_A 135 QVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQ 172 (193)
T ss_dssp CEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTC
T ss_pred CEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCC
Confidence 99999999887 589999999999999999999987654
No 352
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6.1e-14 Score=100.31 Aligned_cols=62 Identities=26% Similarity=0.463 Sum_probs=54.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCC-ceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCC-cc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG-VV 281 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG-~~ 281 (283)
...++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~ 69 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVE 69 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCee
Confidence 35679999999999999999999999999 6666552 479999999999999999999999 54
No 353
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.46 E-value=1.5e-13 Score=111.91 Aligned_cols=77 Identities=27% Similarity=0.473 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccC-CceeEEe
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG-GRTVKVN 187 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~G-~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~-gr~l~v~ 187 (283)
.+.++|||+|||..+++++|+++|+.|| .|..++++.+. +|||||+|.+.++|.+|+..++|..++ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4678999999999999999999999999 99999997543 799999999999999999999999999 9999999
Q ss_pred cccC
Q 023381 188 FPEV 191 (283)
Q Consensus 188 ~a~~ 191 (283)
++.+
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9864
No 354
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.46 E-value=8.3e-14 Score=98.22 Aligned_cols=62 Identities=26% Similarity=0.644 Sum_probs=56.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC----C-------CceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQ----P-------GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|||+|||+.+++++|+++|++| | .|..+++..+ +|||||+|.+.++|.+|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45799999999999999999999999 8 8999988743 799999999999999999 9999764
No 355
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=2.1e-13 Score=101.80 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCC--C---CCHHHHHHHHHhcCCceEEEEEecCC----CCCceeEEEEEECCHHHHHHHHHhhCCCccCC
Q 023381 111 EAARLYVGNLPY--S---MTSSSLAEVFAEAGTVASAEIVYDRV----TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (283)
Q Consensus 111 ~~~~l~v~nLp~--~---~te~~l~~~F~~~G~i~~i~i~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g 181 (283)
+.++|+|.|+-. + --+++|++.|++||.|.+|.|+++.. +++++|++||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 788999999942 2 23689999999999999999998864 45788999999999999999999999999999
Q ss_pred ceeEEeccc
Q 023381 182 RTVKVNFPE 190 (283)
Q Consensus 182 r~l~v~~a~ 190 (283)
|.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999865
No 356
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.45 E-value=1.4e-13 Score=113.08 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCc--eEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCc----
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTV--ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR---- 182 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i--~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr---- 182 (283)
..+.++|||+|||+++++++|+++|++||.| ..++++.+. +..+|||||+|.+.++|.+|+..|||..|.|+
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 3467899999999999999999999999999 899988775 55679999999999999999999999999886
Q ss_pred eeEEec
Q 023381 183 TVKVNF 188 (283)
Q Consensus 183 ~l~v~~ 188 (283)
++.|.+
T Consensus 198 p~~vk~ 203 (205)
T 3tyt_A 198 PYTLKL 203 (205)
T ss_dssp CEECEE
T ss_pred ceEEEe
Confidence 455554
No 357
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.45 E-value=2.8e-13 Score=113.12 Aligned_cols=78 Identities=27% Similarity=0.459 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccC-CceeEE
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG-GRTVKV 186 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G-~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~-gr~l~v 186 (283)
..+.++|||+|||+.+++++|+++|+.|| .|..+.++.+ .+|||||+|.+.++|.+|++.|+|..+. |+.|.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 34578999999999999999999999999 9999999653 3799999999999999999999999999 999999
Q ss_pred ecccC
Q 023381 187 NFPEV 191 (283)
Q Consensus 187 ~~a~~ 191 (283)
.++..
T Consensus 223 ~~a~~ 227 (229)
T 2adc_A 223 SFSKS 227 (229)
T ss_dssp EECSS
T ss_pred EEecC
Confidence 99874
No 358
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.44 E-value=4.3e-13 Score=114.22 Aligned_cols=83 Identities=29% Similarity=0.354 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhC-CCccC---Ccee
Q 023381 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD-GSQIG---GRTV 184 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~-g~~i~---gr~l 184 (283)
..+..+|||+|||+.+++++|+++|+.||.|..|.++++. +|+++|||||+|.+.++|.+|+..++ |..+. ||.|
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 4567899999999999999999999999999999999995 89999999999999999999999994 44444 9999
Q ss_pred EEecccCC
Q 023381 185 KVNFPEVP 192 (283)
Q Consensus 185 ~v~~a~~~ 192 (283)
.|.++...
T Consensus 172 ~v~~~~~~ 179 (261)
T 3sde_A 172 IVEPMEQF 179 (261)
T ss_dssp EEEECCCE
T ss_pred EEeecccc
Confidence 99987643
No 359
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.2e-13 Score=95.14 Aligned_cols=60 Identities=22% Similarity=0.214 Sum_probs=52.3
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHHhccC-CCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcccC
Q 023381 214 SPHK-IYAGNLGWGLTSQG----LRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVRL 283 (283)
Q Consensus 214 ~~~~-l~V~nLp~~~te~~----L~~~F~~~-G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~~ 283 (283)
+..+ |||+|||+.+++++ |+++|++| |.|.+| +| |+|||+|.+.++|.+|++.|||..++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~ 72 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVF 72 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccC
Confidence 3455 89999999999988 55899999 599988 33 99999999999999999999998753
No 360
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.40 E-value=8e-13 Score=99.27 Aligned_cols=62 Identities=24% Similarity=0.345 Sum_probs=56.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+|+ .+++++|+++|++||.|..|.+. .++|||||+|.+.++|.+|+..|||..+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~ 98 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV 98 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45689999995 69999999999999999999985 5689999999999999999999999764
No 361
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.7e-13 Score=95.18 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=50.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHH
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al 274 (283)
..++|||+|||+.+++++|+++|++||.|..++++.+ ++|||||+|.+.++|++|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHh
Confidence 4589999999999999999999999999999998754 6899999999999997643
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.3e-11 Score=89.25 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=62.8
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCcee
Q 023381 112 AARLYVGNLP-------YSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (283)
Q Consensus 112 ~~~l~v~nLp-------~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l 184 (283)
..+|.|.-.. ..+++++|+++|++||.|..|.++ ++++|||||+|.+.++|..|++.+ ..+.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE--VGLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC--CBCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc--CCCCCCeE
Confidence 3455555433 458999999999999999999997 467999999999999999999964 44789999
Q ss_pred EEecccCCCC
Q 023381 185 KVNFPEVPRG 194 (283)
Q Consensus 185 ~v~~a~~~~~ 194 (283)
+|.++..+..
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999875543
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.35 E-value=1.6e-12 Score=95.10 Aligned_cols=69 Identities=19% Similarity=0.083 Sum_probs=59.4
Q ss_pred CCCeEEEcCCC--CCCC--------HHHHHHHhccCCCceEEEEeecCCC--CCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 214 SPHKIYAGNLG--WGLT--------SQGLRDAFQGQPGLLSAKVIFERYT--GRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 214 ~~~~l~V~nLp--~~~t--------e~~L~~~F~~~G~i~~~~i~~~~~~--g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
+.+.|.+.|+- ..+. +++|++.|++||.|.++.|++++.+ +.++|+|||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 56789999983 3333 4699999999999999999988755 4689999999999999999999999987
Q ss_pred c
Q 023381 282 R 282 (283)
Q Consensus 282 ~ 282 (283)
|
T Consensus 84 f 84 (105)
T 3v4m_A 84 F 84 (105)
T ss_dssp E
T ss_pred e
Confidence 5
No 364
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=2.1e-12 Score=113.39 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=57.9
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGN--LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..+.++|||+| |++.+++++|+++|++||.|..+.+.. +||||||+|.+.++|++|++.|||+.+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 35678999999 578999999999999999999887642 589999999999999999999999864
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.32 E-value=3e-12 Score=106.82 Aligned_cols=64 Identities=20% Similarity=0.314 Sum_probs=59.2
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 213 DSPHKIYAGNLGWGL---------TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...++|||+||+..+ ++++|+++|++||.|.+|+|+. +||||||+|.+.++|..|++.|||+.+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 456899999999998 7999999999999999999984 489999999999999999999999876
No 366
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.1e-11 Score=91.75 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=56.2
Q ss_pred CCCCeEEEcCCCCCCC-----------HHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 213 DSPHKIYAGNLGWGLT-----------SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 213 ~~~~~l~V~nLp~~~t-----------e~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
.+.++|+|.||..... +++|+++|++||.|..+.| .++ .++|||||+|.+.++|.+|+..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4578999999955432 5899999999999999966 444 379999999999999999999999986
Q ss_pred c
Q 023381 282 R 282 (283)
Q Consensus 282 ~ 282 (283)
+
T Consensus 89 ~ 89 (112)
T 2dit_A 89 F 89 (112)
T ss_dssp E
T ss_pred E
Confidence 4
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.31 E-value=4.8e-12 Score=111.02 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=66.4
Q ss_pred ccCCCCCeEEEcC--CCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCcc---CC
Q 023381 107 AASDEAARLYVGN--LPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI---GG 181 (283)
Q Consensus 107 ~~~~~~~~l~v~n--Lp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i---~g 181 (283)
....+.++|||+| |++.+|+++|+++|++||.|..|.+.. +||||||+|.+.++|++|++.|||..+ .|
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 4467889999999 589999999999999999999987752 479999999999999999999999977 35
Q ss_pred c--eeEEecc
Q 023381 182 R--TVKVNFP 189 (283)
Q Consensus 182 r--~l~v~~a 189 (283)
+ .+.|.++
T Consensus 87 ~~~~ly~~~~ 96 (345)
T 3tht_A 87 QKITLYLNFV 96 (345)
T ss_dssp CEEECEEEEC
T ss_pred CceEEEEEEe
Confidence 6 4666665
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.30 E-value=4e-12 Score=94.79 Aligned_cols=69 Identities=14% Similarity=0.040 Sum_probs=59.7
Q ss_pred CCCeEEEcCCCCC-----CCHHHHHHHhccCCCceEEEEeecCC----CCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWG-----LTSQGLRDAFQGQPGLLSAKVIFERY----TGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~-----~te~~L~~~F~~~G~i~~~~i~~~~~----~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+.++|++.|+-.. --++||++.|++||.|..+.|+.++. ++.++|+|||+|.+.++|.+|++.|||..|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 5678999998432 23689999999999999999999864 457789999999999999999999999876
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.28 E-value=9.9e-13 Score=96.02 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=54.0
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 220 AGNLGWGLTSQGLRDAF------------QGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 220 V~nLp~~~te~~L~~~F------------~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+.||++.+++++|++.| ++||.|.++.|+.+. +|+++|||||+|.+.++|.+|+..|||..+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~ 93 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWF 93 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 56777777887777666 999999999999876 488999999999999999999999999865
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.26 E-value=1.6e-11 Score=90.95 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCcc
Q 023381 110 DEAARLYVGNLPYSMT----------SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI 179 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~t----------e~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i 179 (283)
-+.++|.+.|+=.... +++|+++|++||.|.+|.+.++. ++|+|||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4677888888833221 35789999999999999986553 589999999999999999999999999
Q ss_pred CCceeEEeccc
Q 023381 180 GGRTVKVNFPE 190 (283)
Q Consensus 180 ~gr~l~v~~a~ 190 (283)
+||.|.|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999875
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-10 Score=83.85 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 225 ~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
..+++++|+++|++||.|..|+++ ++++|||||+|.+.++|..|++.++|.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~ 77 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGL 77 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCC
Confidence 468999999999999999999987 467999999999999999999987764
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.10 E-value=2.2e-10 Score=84.70 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=54.5
Q ss_pred CCCeEEEcCCCCCCC----------HHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLT----------SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~t----------e~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
+.+.|.+.|+-.... ++||++.|++||.|..+.|.++. .+|+|||+|.+.++|.+|++.|||..|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456788888854322 45899999999999999986543 589999999999999999999999876
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=6.3e-10 Score=82.57 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECC-HHHHHHHHHhh--CCCccCCcee
Q 023381 109 SDEAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS-VEEAKEAIRLF--DGSQIGGRTV 184 (283)
Q Consensus 109 ~~~~~~l~v~nLp~~-~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~-~~~a~~a~~~l--~g~~i~gr~l 184 (283)
-.....|+|+||+++ +++++|+++|+.||.|..|.+.++.. .|||.|.+ +.+|..|++.+ ++..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 346778999999999 99999999999999999999987763 59999999 89999999988 4778999988
Q ss_pred EEeccc
Q 023381 185 KVNFPE 190 (283)
Q Consensus 185 ~v~~a~ 190 (283)
.+.+..
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887643
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=8.3e-10 Score=76.98 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=61.9
Q ss_pred CCCCCeEEEcCCCC----CCCH----HHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccC
Q 023381 109 SDEAARLYVGNLPY----SMTS----SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (283)
Q Consensus 109 ~~~~~~l~v~nLp~----~~te----~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~ 180 (283)
..+..||+|.-.+. ..-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++ |||..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 45667888877662 2333 6789999999999999998664 8999999999999999 9999999
Q ss_pred CceeEEeccc
Q 023381 181 GRTVKVNFPE 190 (283)
Q Consensus 181 gr~l~v~~a~ 190 (283)
||.|+|.++.
T Consensus 75 Gr~LkV~lkt 84 (91)
T 2dnr_A 75 NRTITIALKS 84 (91)
T ss_dssp TEEEEEEECC
T ss_pred CeEEEEEeCC
Confidence 9999999876
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.1e-09 Score=81.34 Aligned_cols=61 Identities=10% Similarity=-0.019 Sum_probs=55.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCC-HHHHHHHHHHcC
Q 023381 212 VDSPHKIYAGNLGWG-LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET-AEDLQSALDAMN 278 (283)
Q Consensus 212 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~-~~~A~~Al~~ln 278 (283)
.+.++.|+|+||++. +++++|+++|++||.|..|.+..+.. .|||+|.+ .++|..|++.||
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTT
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhh
Confidence 456789999999999 99999999999999999999987764 59999999 899999999985
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.91 E-value=3.7e-09 Score=87.50 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHhcCCceEEEEEecCCC----CCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEeccc
Q 023381 124 MTSSSLAEVFAEAGTVASAEIVYDRVT----DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (283)
Q Consensus 124 ~te~~l~~~F~~~G~i~~i~i~~~~~~----~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~~a~ 190 (283)
-.+++|...|++||.|..+.+.++..+ ++++|++||+|.+.++|.+|++.|+|..++||.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 346789999999999999999866543 4899999999999999999999999999999999999864
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=3.9e-09 Score=73.95 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=62.5
Q ss_pred cCCCCCeEEEcCCCCC-----CCH----HHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCc
Q 023381 108 ASDEAARLYVGNLPYS-----MTS----SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (283)
Q Consensus 108 ~~~~~~~l~v~nLp~~-----~te----~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~ 178 (283)
...+..||+|.-++.. .-. .+|.+.|..||.|..++++.++ +||+|.+.++|.+|++ |||..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3567789999877643 222 5688999999999999999764 9999999999999999 99999
Q ss_pred cCCceeEEeccc
Q 023381 179 IGGRTVKVNFPE 190 (283)
Q Consensus 179 i~gr~l~v~~a~ 190 (283)
+.||.|+|.+..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998743
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.62 E-value=5.1e-08 Score=80.58 Aligned_cols=56 Identities=16% Similarity=0.083 Sum_probs=50.1
Q ss_pred CCHHHHHHHhccCCCceEEEEeecCC----CCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 227 LTSQGLRDAFQGQPGLLSAKVIFERY----TGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 227 ~te~~L~~~F~~~G~i~~~~i~~~~~----~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
-.+++|++.|++||.|..+.|..+.. +|.++|++||+|.+.++|.+|++.|||..|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 45789999999999999999986543 458999999999999999999999999876
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=1e-07 Score=66.37 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=50.8
Q ss_pred CCCCCeEEEcCCCC----CCCH----HHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 212 VDSPHKIYAGNLGW----GLTS----QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 212 ~~~~~~l~V~nLp~----~~te----~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
.++..+|+|...+. .+-. .+|.+.|.+||.|..+++..+. +||+|.+.++|.+|+. |||.-+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe
Confidence 35667888887762 3333 6799999999999999998764 8999999999999998 999753
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.54 E-value=4.3e-07 Score=64.91 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc-----CCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCcee
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAEA-----GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~~-----G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l 184 (283)
+..++|-+-|||-.+++..|+.+.+.+ |.+..|.++.|. |-|+|+|.+...|-+|.-.|+|..|.||.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 357889999999999999999999999 999999998775 779999999999999887899999999999
Q ss_pred EEec
Q 023381 185 KVNF 188 (283)
Q Consensus 185 ~v~~ 188 (283)
++.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9863
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=3.8e-07 Score=63.87 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=52.3
Q ss_pred CCCCCCeEEEcCCCCC-----CCH----HHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 211 FVDSPHKIYAGNLGWG-----LTS----QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 211 ~~~~~~~l~V~nLp~~-----~te----~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
..++..+|+|..++.. +-. .+|.+.|..||.|..+++..++ +||+|.+.++|.+||+ |||..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 4567789999988743 222 5699999999999999998765 9999999999999998 99975
Q ss_pred c
Q 023381 282 R 282 (283)
Q Consensus 282 ~ 282 (283)
+
T Consensus 82 v 82 (95)
T 1ufw_A 82 V 82 (95)
T ss_dssp E
T ss_pred e
Confidence 4
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.04 E-value=1.9e-05 Score=56.47 Aligned_cols=63 Identities=11% Similarity=0.016 Sum_probs=57.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC-----CCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQ-----PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~-----G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
..++|-+-|||..+++..|+.+.+++ |.++.+.+..|- |-|+|+|.+...|.+|.-.|||..|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef 87 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQF 87 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeee
Confidence 46789999999999999999999999 999999988664 4699999999999999999999865
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=0.00018 Score=50.94 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHh-----cCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCcee
Q 023381 110 DEAARLYVGNLPYSMTSSSLAEVFAE-----AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (283)
Q Consensus 110 ~~~~~l~v~nLp~~~te~~l~~~F~~-----~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l 184 (283)
.-..+|.|.|||..+.++.|.-+|+. -|+|..+... + +-|+|+|.+...|++.++. ....|+|..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-----~---~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-----G---CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-----T---TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-----C---CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 34678999999999999999999987 2578877764 1 6689999999999999984 4778899999
Q ss_pred EEecccCCCCCCccCCCCcccCCCCCCCCCCCeEEEcCCCCCCC
Q 023381 185 KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228 (283)
Q Consensus 185 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 228 (283)
.|.-.. ...+.+|++.||+..++
T Consensus 77 sV~P~~---------------------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAP---------------------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECC---------------------CCCCCCCCCCSCCCCCC
T ss_pred EEEcCC---------------------CCCcceEeeecCCCCCC
Confidence 996422 11345788888888765
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.71 E-value=0.00015 Score=50.69 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=56.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCC--CCccEEEEEeCCHHHHHHHHHHcCCcccC
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTG--RSRGFGFVTFETAEDLQSALDAMNGVVRL 283 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g--~~kg~afV~f~~~~~A~~Al~~lnG~~~~ 283 (283)
.+|.|++||..+|++++.+.++..+.+.....+..+.+. ..-..|+|.|.+.+++..-.+.++|..|+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 479999999999999999999999888777766554332 23457999999999999999999999874
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.44 E-value=0.0005 Score=47.93 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=56.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCC--ceeEEEEEECCHHHHHHHHHhhCCCccC
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~~i~ 180 (283)
.+|.|++||+.+|++++.+.++.+..+.....+..+.+.+ .-+-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4688999999999999999999998877777765554332 3467999999999999999999998774
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.22 E-value=0.002 Score=45.75 Aligned_cols=74 Identities=9% Similarity=0.078 Sum_probs=62.3
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeE
Q 023381 111 EAARLYVGNLPYSM-T----SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (283)
Q Consensus 111 ~~~~l~v~nLp~~~-t----e~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~ 185 (283)
-..+|+|.||+.++ . .+.++.+|..|+++......+.- .-..|.|.+.++|.+|-..||+..+.|++++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 45689999998864 2 25778999999999887776443 3468999999999999999999999999999
Q ss_pred Eeccc
Q 023381 186 VNFPE 190 (283)
Q Consensus 186 v~~a~ 190 (283)
|-++.
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99976
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.08 E-value=0.0038 Score=43.62 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=44.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHc
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~l 277 (283)
..++| +.|..+...||.++|+.||.|. |+.+.|- -|||.|.+++.|..|+..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 45566 9999999999999999999554 5555443 6999999999999999876
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=0.002 Score=45.54 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=46.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC-----CCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQ-----PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~-----G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ 276 (283)
...+|.|.|||..+.++.|.-+|+.- |.|..+.... +-|+|+|.+.+.|++.|+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC
Confidence 45789999999999999999999762 5777776642 4699999999999999986
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.92 E-value=0.0024 Score=46.62 Aligned_cols=61 Identities=8% Similarity=0.088 Sum_probs=50.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCccc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVR 282 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~ 282 (283)
...-|.|.+.|.. ....|.+.|++||.|++.... ...++..|+|.+..+|++||. .||.++
T Consensus 23 ~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii 83 (119)
T 1wwh_A 23 DDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIF 83 (119)
T ss_dssp GGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEE
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEe
Confidence 3567889999887 477899999999999988751 235799999999999999997 687764
No 390
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.89 E-value=0.0011 Score=46.50 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=51.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCC--CCccEEEEEeCCHHHHHHHHHHcCCcccC
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTG--RSRGFGFVTFETAEDLQSALDAMNGVVRL 283 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g--~~kg~afV~f~~~~~A~~Al~~lnG~~~~ 283 (283)
.-+|.|+.||..+|++++.+.++..-.+.....+..+.+. ..-..|+|.|.+.++...-.+..+|.+|+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4579999999999999999998876554433332222211 12245999999999999999999999874
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.68 E-value=0.0023 Score=44.91 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=44.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ln 278 (283)
..++| +.|..+...||.++|+.||.| .|+.+.|- -|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34556 999999999999999999944 45555443 69999999999999998763
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.62 E-value=0.01 Score=41.50 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=45.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhh
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 174 (283)
-.+.++| ..|.+....||.++|+.||.|. |..+-| --|||.|.+++.|..|+..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 3456666 9999999999999999999553 555544 36999999999999999965
No 393
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.57 E-value=0.0042 Score=44.10 Aligned_cols=64 Identities=8% Similarity=-0.074 Sum_probs=52.0
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCCcccC
Q 023381 214 SPHKIYAGNLGWGL-T----SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVVRL 283 (283)
Q Consensus 214 ~~~~l~V~nLp~~~-t----e~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG~~~~ 283 (283)
-+++|+|.||+..+ . .+.++++|..|+.+.....++.- .-..|.|.+.++|.+|...|||..|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~ 72 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFL 72 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEET
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceec
Confidence 35789999998754 2 25779999999999988776432 25799999999999999999998764
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.25 E-value=0.021 Score=41.62 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=55.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCC-ceeEEec
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG-RTVKVNF 188 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~g-r~l~v~~ 188 (283)
.+-|.|-+.|... ...+.+.|.+||.|.+.... ....+-.|.|.+..+|++|+.. ||..+.| -.|-|..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence 4568888888875 56788899999999888761 2357899999999999999995 9999986 4455554
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.19 E-value=0.0027 Score=44.55 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=48.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCC--CceeEEEEEECCHHHHHHHHHhhCCCccC
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD--RSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~i~ 180 (283)
..+|.|++||+.+|++++.+.++.+-.+.....+..+.+. ..-.-|||.|.+.+++....+.++|..+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4578999999999999877666655443322222222111 12356899999999999999999998774
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.89 E-value=0.0048 Score=55.89 Aligned_cols=57 Identities=7% Similarity=0.069 Sum_probs=44.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHh
Q 023381 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (283)
Q Consensus 111 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 173 (283)
..++|+|. .|..+++.+|.++|++||+|.++.+..+. .-||.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 45789997 79999999999999999999999887654 37999999999999988763
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.82 E-value=0.012 Score=41.15 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=43.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhC
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 175 (283)
+.++| +.|.+....+|.++|+.||. ..|..+-| --|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34556 99999999999999999993 34555544 369999999999999999653
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.13 E-value=0.013 Score=53.07 Aligned_cols=54 Identities=7% Similarity=-0.031 Sum_probs=40.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHH
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~ 275 (283)
+.|+|. .|...++.+|.++|++||.|..+....+. .-||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 679997 78899999999999999999998776543 3699999999999987764
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.03 E-value=0.015 Score=42.98 Aligned_cols=66 Identities=15% Similarity=0.064 Sum_probs=45.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeec-------------CCCC-CCccEEEEEeCCHHHHHHHHHHcCCc
Q 023381 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE-------------RYTG-RSRGFGFVTFETAEDLQSALDAMNGV 280 (283)
Q Consensus 215 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~-------------~~~g-~~kg~afV~f~~~~~A~~Al~~lnG~ 280 (283)
..-|.|.+.|.. ....+.+.|++||.|.+-.-..+ +..+ ...++..|+|.+..+|.+||. .||+
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 345778888654 56678899999999987221111 0001 136789999999999999997 7777
Q ss_pred cc
Q 023381 281 VR 282 (283)
Q Consensus 281 ~~ 282 (283)
++
T Consensus 85 ii 86 (132)
T 3p3d_A 85 VF 86 (132)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.10 E-value=0.1 Score=38.49 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=52.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEE-EEe------------cCCCC-CceeEEEEEECCHHHHHHHHHhhCCC
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAE-IVY------------DRVTD-RSRGFGFVTMGSVEEAKEAIRLFDGS 177 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~-i~~------------~~~~~-~~~g~afv~f~~~~~a~~a~~~l~g~ 177 (283)
...|.|-+.|.+.. ..+-+.|++||.|..-. ..+ .+... ...++..|.|.+..+|.+|+.. ||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 34566777877655 46678899999986521 111 00001 1356789999999999999995 999
Q ss_pred ccCCceeEEecc
Q 023381 178 QIGGRTVKVNFP 189 (283)
Q Consensus 178 ~i~gr~l~v~~a 189 (283)
.|.|.-|-|...
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999987777654
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.42 E-value=1.8 Score=39.78 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=43.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 023381 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (283)
Q Consensus 216 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~ln 278 (283)
..++|+ .|..+...+|.++|+.||.+ +|+.+.+ ..|||.|.+.+.|..++..++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 456665 88899999999999999954 5554433 369999999999999999884
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=76.68 E-value=7 Score=35.75 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=43.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhC
Q 023381 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (283)
Q Consensus 112 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 175 (283)
...++|+ .|..+...+|.+.|+.||.+ .|+.+-+ ..|||.|.+.+.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3467776 88899999999999999954 4544422 459999999999999999774
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=73.35 E-value=19 Score=24.42 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=46.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHc
Q 023381 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (283)
Q Consensus 214 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~l 277 (283)
..+-|.|-|+|..+-..++.-.....|---.|..+ .|.|+|.|.+.++...|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 45778899999999998888777777877777765 356999999999999999875
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=48.60 E-value=37 Score=21.71 Aligned_cols=67 Identities=13% Similarity=0.301 Sum_probs=39.6
Q ss_pred eEEEcCCC-CCCCHHHHHHHHHhcCC-----ceEEEEEecCCCCCceeEEEEEECCHHHHHHHHHhhCCCccCCceeEEe
Q 023381 114 RLYVGNLP-YSMTSSSLAEVFAEAGT-----VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (283)
Q Consensus 114 ~l~v~nLp-~~~te~~l~~~F~~~G~-----i~~i~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~i~gr~l~v~ 187 (283)
++||..-- ..++..+|..++..-+. |-.|.+. -.|.||+-.. ..+..+++.+++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 45553222 23566777777776543 3445552 3478888774 45677888889999999999887
Q ss_pred cc
Q 023381 188 FP 189 (283)
Q Consensus 188 ~a 189 (283)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.42 E-value=53 Score=25.18 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=37.8
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--HhcCCceEEEEEecCCCCCceeEEEEEECC-HHHHHHHHH
Q 023381 114 RLYVGNLPY-S--------MTSSSLAEVF--AEAGTVASAEIVYDRVTDRSRGFGFVTMGS-VEEAKEAIR 172 (283)
Q Consensus 114 ~l~v~nLp~-~--------~te~~l~~~F--~~~G~i~~i~i~~~~~~~~~~g~afv~f~~-~~~a~~a~~ 172 (283)
++.|-|+|. . ....+|++.| ..|.+++ ++.+.+. .-++|+|.|.|.. -.....|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 456678886 2 3347899977 8999877 5555554 3468999999975 334555554
No 406
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=34.01 E-value=8.6 Score=31.40 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=0.0
Q ss_pred Ccccchhh-hhchhhhhhhcc
Q 023381 1 MAASTVSM-AASSSLCNKLYN 20 (283)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~~~~ 20 (283)
||+.+.|. |+|++.+-++.+
T Consensus 1 ~~~~~~~~~c~~~~~~~~~~~ 21 (257)
T 3bbo_T 1 MASATLAFSCSSLCATLKLPQ 21 (257)
T ss_dssp ---------------------
T ss_pred CcceEEEeeeccceeeeeccC
Confidence 88888887 777777655544
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=33.32 E-value=92 Score=23.84 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=32.5
Q ss_pred eEEEcCCCC---------CCCHHHHHHHh--ccCCCceEEEEeecCCCCCCccEEEEEeCC
Q 023381 217 KIYAGNLGW---------GLTSQGLRDAF--QGQPGLLSAKVIFERYTGRSRGFGFVTFET 266 (283)
Q Consensus 217 ~l~V~nLp~---------~~te~~L~~~F--~~~G~i~~~~i~~~~~~g~~kg~afV~f~~ 266 (283)
.+.|.|+|. ..+..+|++.| ..|..+. ++.+.++ ..+.|+|.|+|.+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNK 71 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecC
Confidence 455666665 14457899977 8998776 5545554 2468999999965
No 408
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=31.84 E-value=29 Score=23.48 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHcCCcc
Q 023381 256 SRGFGFVTFETAEDLQSALDAMNGVV 281 (283)
Q Consensus 256 ~kg~afV~f~~~~~A~~Al~~lnG~~ 281 (283)
..||.||++...++...+++...|..
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCce
Confidence 68999999999999999998877653
No 409
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=23.66 E-value=71 Score=22.26 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=25.8
Q ss_pred CceEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHcCC
Q 023381 241 GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (283)
Q Consensus 241 ~i~~~~i~~~~~~g~~kg~afV~f~~~~~A~~Al~~lnG 279 (283)
.|.++... ...|||-||+=.+..+...|++.+-+
T Consensus 40 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 40 QIKSVVAP-----EHVKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCCEEEEC-----TTCCSEEEEEESSHHHHHHHHTTCGG
T ss_pred ceEEEEec-----CCCceEEEEEeCCHHHHHHHHhcccc
Confidence 35555543 23599999999999999999987643
No 410
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=22.22 E-value=96 Score=23.35 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=0.0
Q ss_pred CCHHHHHHHhccCCCc---eEEEEeecCCCCCCccEEE
Q 023381 227 LTSQGLRDAFQGQPGL---LSAKVIFERYTGRSRGFGF 261 (283)
Q Consensus 227 ~te~~L~~~F~~~G~i---~~~~i~~~~~~g~~kg~af 261 (283)
.++++|+++-...|.+ ++.++..+..+|+.+.+||
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv 40 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGY 40 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEE
No 411
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.66 E-value=97 Score=20.79 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=19.5
Q ss_pred CceEEEEeecCCCCCCccEEEEEeCC
Q 023381 241 GLLSAKVIFERYTGRSRGFGFVTFET 266 (283)
Q Consensus 241 ~i~~~~i~~~~~~g~~kg~afV~f~~ 266 (283)
.|.+++|..-...|+-+++|=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 46677776665567889999998875
No 412
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=21.49 E-value=74 Score=26.18 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=25.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEE
Q 023381 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145 (283)
Q Consensus 113 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~i~i~ 145 (283)
..+.|+||||.++..-|.+++.. +.+..+.++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 45789999999999999999987 666555443
Done!