Query 023382
Match_columns 283
No_of_seqs 38 out of 40
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 05:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nc7_A Hypothetical protein TM 30.1 17 0.0006 30.7 1.2 44 131-187 15-63 (138)
2 2lnv_A General secretion pathw 24.5 36 0.0012 27.0 2.1 48 152-201 21-81 (104)
3 3oss_C Type 2 secretion system 21.4 50 0.0017 24.4 2.2 44 153-201 5-61 (68)
4 2ka5_A Putative anti-sigma fac 13.6 47 0.0016 25.1 0.4 46 118-165 19-65 (125)
5 2lc4_A PILP protein; type IV p 10.3 2.3E+02 0.0079 22.6 3.5 34 166-199 45-82 (111)
6 2f1f_A Acetolactate synthase i 9.9 71 0.0024 26.7 0.4 30 162-191 107-137 (164)
7 2pc6_A Probable acetolactate s 9.4 72 0.0025 26.7 0.2 31 162-192 108-139 (165)
8 2fgc_A Acetolactate synthase, 8.9 82 0.0028 27.4 0.4 31 162-192 134-165 (193)
9 2y4x_A PILP protein; biosynthe 8.7 2.8E+02 0.0097 21.3 3.4 34 166-199 38-75 (93)
10 1w8x_N Protein P31, protein C, 8.3 1.2E+02 0.0041 25.0 1.1 41 84-127 65-105 (126)
No 1
>1nc7_A Hypothetical protein TM1070; structural genomics, molecular propeller, PSI, protein structure initiative; 1.55A {Thermotoga maritima} SCOP: b.123.1.1
Probab=30.11 E-value=17 Score=30.73 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=25.3
Q ss_pred cccCCCccccc--eEEecCC--CCCCcceEEeecceeeeeeEecCc-cEEEEeecCCchhhh
Q 023382 131 VDLSGDMGAVG--RILVPGT--AEGNHEMFLDLKGTIYKTTLVPSR-TFCIVSFGHSEAKIE 187 (283)
Q Consensus 131 lDLsGD~GAVG--R~~v~~~--~~~~~~l~LDLKG~iY~atIvPs~-T~~VVsvg~tEAKVE 187 (283)
-+|-|.|-.+| ||+|.++ |....+- +.|- ++||+|.|-..|+|+
T Consensus 15 ~~l~~~~~~iG~r~W~IpdGyIP~~s~G~-------------~~SHEslCILN~gd~dA~i~ 63 (138)
T 1nc7_A 15 ENLYFQGHMNGARKWFFPDGYIPNGKRGY-------------LVSHESLCIMNTGDETAKIR 63 (138)
T ss_dssp -------CCCSEEEEEEEEECCCCCEETT-------------EECEEEEEEEECSSSCEEEE
T ss_pred hhhcccccccccEEEEecCcccCCCCCCC-------------cccceeEEEeecCCCCcEEE
Confidence 45777788888 5777643 2211111 4555 899999999999986
No 2
>2lnv_A General secretion pathway protein C; transport protein; NMR {Dickeya dadantii}
Probab=24.54 E-value=36 Score=27.04 Aligned_cols=48 Identities=29% Similarity=0.293 Sum_probs=36.3
Q ss_pred CcceEEeecceeeeeeEecCccEEEEeec-------------CCchhhhheeccceeeccCcc
Q 023382 152 NHEMFLDLKGTIYKTTLVPSRTFCIVSFG-------------HSEAKIEAIMNDFIQLKPQSN 201 (283)
Q Consensus 152 ~~~l~LDLKG~iY~atIvPs~T~~VVsvg-------------~tEAKVEai~~dfiqLr~~~~ 201 (283)
...|.|-|.|++|.. -|...++|+..+ .+.|+|..|+.|.|-|+.++.
T Consensus 21 ~T~L~L~L~GVv~s~--~~~~S~AII~~~g~Q~~Y~vGd~I~g~~a~L~~I~~DrVII~~~Gr 81 (104)
T 2lnv_A 21 PSTLNLSLTGVMAGD--DDSRSIAIISKDNEQFSRGVNEEVPGYNAKIVSIRPDRVVLQYQGR 81 (104)
T ss_dssp CSCCCSEEEEEECCS--SSSSCEEEEESSSCCEEECTTEECSSSCCEEEEEETTEEEEEETTE
T ss_pred CCCcceEEEEEEecC--CccccEEEEEcCCeEeEEeCCCCcCCCCEEEEEEeCCEEEEecCCE
Confidence 356889999998853 455566666544 236899999999999999886
No 3
>3oss_C Type 2 secretion system, GSPC; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=21.44 E-value=50 Score=24.41 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=33.5
Q ss_pred cceEEeecceeeeeeEecCccEEEEeec-------------CCchhhhheeccceeeccCcc
Q 023382 153 HEMFLDLKGTIYKTTLVPSRTFCIVSFG-------------HSEAKIEAIMNDFIQLKPQSN 201 (283)
Q Consensus 153 ~~l~LDLKG~iY~atIvPs~T~~VVsvg-------------~tEAKVEai~~dfiqLr~~~~ 201 (283)
..|.|-|.|++... ..++|+.-+ .+.|+|..|+.|-|-|+.++.
T Consensus 5 T~L~l~L~Gvv~s~-----~s~AII~~~g~q~~Y~vGd~i~g~~a~l~~V~~DrVIl~~~G~ 61 (68)
T 3oss_C 5 TRLNVVLRGIAFGA-----RPGAVIEEGGKQQVYLQGERLDSHNAVIEEINRDHVMLRYQGK 61 (68)
T ss_dssp CCSSCEEEEEEESS-----SCEEEEEETTEEEEECTTCBCSSSSEEEEEECSSEEEEEETTE
T ss_pred ccceeEEEEEEeCC-----CcEEEEecCCcEeEEECCCEeCCCCEEEEEEeCCEEEEecCCE
Confidence 45778899997633 666666644 246899999999999999886
No 4
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=13.61 E-value=47 Score=25.08 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=25.4
Q ss_pred ccceeeeeccCCccccCCCccccceEEec-CCCCCCcceEEeecceeee
Q 023382 118 QRTKALVECEGESVDLSGDMGAVGRILVP-GTAEGNHEMFLDLKGTIYK 165 (283)
Q Consensus 118 ~r~k~LvE~eg~slDLsGD~GAVGR~~v~-~~~~~~~~l~LDLKG~iY~ 165 (283)
...-+++.+.|+ ||+.. ...+-+.+.. --..+...|+|||.++-|-
T Consensus 19 ~~~~~vv~l~G~-Ld~~~-a~~l~~~l~~~~~~~~~~~vvlDls~V~~i 65 (125)
T 2ka5_A 19 VDDVVILMPNKE-LNIEN-AHLFKKWVFDEFLNKGYNKIFLVLSDVESI 65 (125)
T ss_dssp CSSCEEECCCSC-CSGGG-THHHHHHHHHHTTTTTCCEEEEECTTCSCC
T ss_pred eCCEEEEEEecE-Eeccc-HHHHHHHHHHHHhhCCCCEEEEECCCCCEE
Confidence 344566777664 55543 2233333222 1122346799999999874
No 5
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=10.29 E-value=2.3e+02 Score=22.64 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=24.6
Q ss_pred eeEecCccEEEEe----ecCCchhhhheeccceeeccC
Q 023382 166 TTLVPSRTFCIVS----FGHSEAKIEAIMNDFIQLKPQ 199 (283)
Q Consensus 166 atIvPs~T~~VVs----vg~tEAKVEai~~dfiqLr~~ 199 (283)
|=|.|.+.+..|. +|++.-||..|..+.|.|++.
T Consensus 45 ALV~~dG~vyrVk~G~ylG~n~GrI~~It~~~I~l~E~ 82 (111)
T 2lc4_A 45 ALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEI 82 (111)
T ss_dssp EEEEETTEEEEEETTCEETTTTEEEEEECSSEEEEEEE
T ss_pred EEEEeCCcEEEEccCCEeccCCCEEEEEeCCeEEEEEE
Confidence 3344445555555 567788999999999999875
No 6
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=9.90 E-value=71 Score=26.65 Aligned_cols=30 Identities=13% Similarity=0.429 Sum_probs=26.3
Q ss_pred eeeeeeEecCc-cEEEEeecCCchhhhheec
Q 023382 162 TIYKTTLVPSR-TFCIVSFGHSEAKIEAIMN 191 (283)
Q Consensus 162 ~iY~atIvPs~-T~~VVsvg~tEAKVEai~~ 191 (283)
-+|+|+||=-. ..+++-+.+++.||+++..
T Consensus 107 ~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~ 137 (164)
T 2f1f_A 107 EIFRGQIIDVTPSLYTVQLAGTSGKLDAFLA 137 (164)
T ss_dssp HHTTCEEEEECSSEEEEEEEECHHHHHHHHH
T ss_pred HHcCCEEEEECCCEEEEEEeCCHHHHHHHHH
Confidence 47999999986 7999999999999998765
No 7
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=9.38 E-value=72 Score=26.75 Aligned_cols=31 Identities=6% Similarity=0.380 Sum_probs=26.7
Q ss_pred eeeeeeEecCc-cEEEEeecCCchhhhheecc
Q 023382 162 TIYKTTLVPSR-TFCIVSFGHSEAKIEAIMND 192 (283)
Q Consensus 162 ~iY~atIvPs~-T~~VVsvg~tEAKVEai~~d 192 (283)
-+|+|+||=-. ..+++-+.++..||+++.+-
T Consensus 108 ~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~ 139 (165)
T 2pc6_A 108 DIFRGNIIDVTNELYTIELTGTRSKLDGFLQA 139 (165)
T ss_dssp HHTTCEEEEEETTEEEEEEEECHHHHHHHHHH
T ss_pred HHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHH
Confidence 47999999985 79999999999999987653
No 8
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=8.87 E-value=82 Score=27.41 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=26.8
Q ss_pred eeeeeeEecCc-cEEEEeecCCchhhhheecc
Q 023382 162 TIYKTTLVPSR-TFCIVSFGHSEAKIEAIMND 192 (283)
Q Consensus 162 ~iY~atIvPs~-T~~VVsvg~tEAKVEai~~d 192 (283)
-+|+|+||=-. ..++|-+..+..||+++.+-
T Consensus 134 ~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~ 165 (193)
T 2fgc_A 134 EIFRGKIIDVSREGAIIEITGARSKVEAFINL 165 (193)
T ss_dssp HHTTCEEEEECSSEEEEEEEECHHHHHHHHHH
T ss_pred HHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHH
Confidence 57999999986 79999999999999987653
No 9
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=8.68 E-value=2.8e+02 Score=21.27 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=24.8
Q ss_pred eeEecCccEEEEe----ecCCchhhhheeccceeeccC
Q 023382 166 TTLVPSRTFCIVS----FGHSEAKIEAIMNDFIQLKPQ 199 (283)
Q Consensus 166 atIvPs~T~~VVs----vg~tEAKVEai~~dfiqLr~~ 199 (283)
|=|.|.+.+..|. +|++.-||.+|..+.|.|++.
T Consensus 38 ALV~~dg~v~~V~~G~yiG~n~G~I~~I~~~~I~l~E~ 75 (93)
T 2y4x_A 38 ALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEI 75 (93)
T ss_dssp EEEEETTEEEEECTTCEETTTTEEEEEEETTEEEEEEE
T ss_pred EEEEeCCCEEEEccCCEeccCCCEEEEEeCCeEEEEEE
Confidence 3344555555565 567788999999999999874
No 10
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=8.31 E-value=1.2e+02 Score=25.01 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=34.8
Q ss_pred CCCCCcchhhhhHhhhhcCCCCCcccceeeccccccceeeeecc
Q 023382 84 GNNDHEDAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECE 127 (283)
Q Consensus 84 ~~~d~~vaeE~~~dK~~~~~vs~~~lPlvlp~kv~r~k~LvE~e 127 (283)
.+++.++.-||+-..++.+---||-.||+.| +|.|+++--.
T Consensus 65 ~~G~~~i~v~eTGQRIt~~AG~QGYfPlL~~---~~~KFv~~~~ 105 (126)
T 1w8x_N 65 NDGAFEIDVEETGQRIKCPAGKQGYFPLLVP---GRAKFVARHL 105 (126)
T ss_dssp CCTTSCCEEEECSSCEECCCCCCSSCCEEEC---CSSSSEEEEE
T ss_pred ccCcEEEeccccCcEEEccCCCcccceeecc---chhhhhhhhh
Confidence 6778888889999999999999999999988 5888777544
Done!