Query 023382
Match_columns 283
No_of_seqs 38 out of 40
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 05:50:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023382.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023382hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v5va1 b.44.2.1 (A:313-401) G 22.9 40 0.0029 23.2 3.8 33 139-172 44-76 (89)
2 d1vloa1 b.44.2.1 (A:278-367) G 16.5 57 0.0041 22.3 3.4 21 152-172 58-78 (90)
3 d1wosa1 b.44.2.1 (A:279-361) G 16.2 69 0.005 21.2 3.7 23 150-172 54-76 (83)
4 d1scza_ c.43.1.1 (A:) Dihydrol 16.0 11 0.00079 31.1 -0.8 60 131-204 142-208 (233)
5 d1pj5a1 b.44.2.1 (A:743-830) N 15.7 91 0.0066 21.2 4.3 21 152-172 57-77 (88)
6 d1xe1a_ b.43.3.1 (A:) Hypothet 14.6 45 0.0033 23.2 2.4 29 161-192 28-56 (91)
7 d2bk0a1 d.129.3.1 (A:2-154) Ma 11.2 62 0.0045 24.6 2.4 27 109-147 30-56 (153)
8 d1wfja_ b.7.1.2 (A:) C2 domain 9.9 1.3E+02 0.0091 20.8 3.6 13 134-146 3-15 (136)
9 d2bw4a1 b.6.1.3 (A:8-164) Nitr 9.6 85 0.0062 23.5 2.7 28 153-181 41-72 (157)
10 d1bh9b_ a.22.1.3 (B:) TAF(II)2 9.3 36 0.0027 24.7 0.4 16 258-273 6-21 (89)
No 1
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.91 E-value=40 Score=23.16 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=23.6
Q ss_pred ccceEEecCCCCCCcceEEeecceeeeeeEecCc
Q 023382 139 AVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSR 172 (283)
Q Consensus 139 AVGR~~v~~~~~~~~~l~LDLKG~iY~atIvPs~ 172 (283)
|.|.|-...+.. ...|.+++.|..|.|+|+..+
T Consensus 44 ala~v~~~~~~~-g~~v~v~i~g~~~~a~v~~~P 76 (89)
T d1v5va1 44 GIAFVKEEYAKP-GIEIEVEIRGQRKKAVTVTPP 76 (89)
T ss_dssp EEEEEEGGGCST-TCEEEEEETTEEEEEEEECSC
T ss_pred EEEEECHHHcCC-CCEEEEEECCeEEEEEEECCC
Confidence 345555443333 368899999999999999876
No 2
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]}
Probab=16.47 E-value=57 Score=22.27 Aligned_cols=21 Identities=0% Similarity=0.091 Sum_probs=18.8
Q ss_pred CcceEEeecceeeeeeEecCc
Q 023382 152 NHEMFLDLKGTIYKTTLVPSR 172 (283)
Q Consensus 152 ~~~l~LDLKG~iY~atIvPs~ 172 (283)
+..+.+++.|..|.|+|++.+
T Consensus 58 g~~~~v~v~g~~~~a~v~~~P 78 (90)
T d1vloa1 58 GETAIVQIRNREMPVKVTKPV 78 (90)
T ss_dssp CSEEEEEETTEEEEEEEECSC
T ss_pred CCEEEEEECCEEEEEEEECCC
Confidence 467899999999999999877
No 3
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=16.20 E-value=69 Score=21.23 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=18.4
Q ss_pred CCCcceEEeecceeeeeeEecCc
Q 023382 150 EGNHEMFLDLKGTIYKTTLVPSR 172 (283)
Q Consensus 150 ~~~~~l~LDLKG~iY~atIvPs~ 172 (283)
.+..-+.++..|..|.|+|+..|
T Consensus 54 ~~~~~~~~~~~g~~~~a~v~~~P 76 (83)
T d1wosa1 54 IGDQLGVVFPGGKLVEALVVKKP 76 (83)
T ss_dssp TTCEEEEEETTTEEEEEEEECSC
T ss_pred CCCeEEEEEECCeEEEEEEECCC
Confidence 34566778899999999999876
No 4
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=16.03 E-value=11 Score=31.08 Aligned_cols=60 Identities=15% Similarity=0.328 Sum_probs=40.4
Q ss_pred cccCCCccccceEEecCCCCCCcceEEeecceeeeeeEecCccEEEEeecCCchhhhheecc-------ceeeccCcchh
Q 023382 131 VDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMND-------FIQLKPQSNVY 203 (283)
Q Consensus 131 lDLsGD~GAVGR~~v~~~~~~~~~l~LDLKG~iY~atIvPs~T~~VVsvg~tEAKVEai~~d-------fiqLr~~~~~~ 203 (283)
=||+| |-+.|.+ - -.-|+.|-+-|++-+..|++++|....+...+-.+ .+-|.+++++.
T Consensus 142 ~d~~g-----gTfTISN-----l----G~~g~~~~tpii~ppq~aIl~vG~i~~~pv~~~g~i~~r~~~~lsls~DHRvi 207 (233)
T d1scza_ 142 EDLTG-----GNFTITN-----G----GVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLI 207 (233)
T ss_dssp HHHSC-----CSEEEEE-----G----GGGTCCCCCCCCCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTC
T ss_pred HHhCC-----CcEEEEc-----C----ccccceeeeeecCCCCceEEecccceeeccccCCeEEEEEEeEEEEEhhcchh
Confidence 46666 6677764 3 34688898999999999999999987765322111 25556666654
Q ss_pred h
Q 023382 204 E 204 (283)
Q Consensus 204 e 204 (283)
+
T Consensus 208 D 208 (233)
T d1scza_ 208 D 208 (233)
T ss_dssp C
T ss_pred c
Confidence 3
No 5
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}
Probab=15.73 E-value=91 Score=21.16 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=18.3
Q ss_pred CcceEEeecceeeeeeEecCc
Q 023382 152 NHEMFLDLKGTIYKTTLVPSR 172 (283)
Q Consensus 152 ~~~l~LDLKG~iY~atIvPs~ 172 (283)
...|.+++-|..|.|+|+..+
T Consensus 57 g~~~~V~~~g~~~~a~v~~~P 77 (88)
T d1pj5a1 57 GDSVDIEYFGRRITATVTEDP 77 (88)
T ss_dssp TCEEEEEETTEEEEEEEECSC
T ss_pred CCEEEEEECCEEEEEEEEccC
Confidence 467899999999999999765
No 6
>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]}
Probab=14.64 E-value=45 Score=23.24 Aligned_cols=29 Identities=14% Similarity=-0.007 Sum_probs=18.4
Q ss_pred ceeeeeeEecCccEEEEeecCCchhhhheecc
Q 023382 161 GTIYKTTLVPSRTFCIVSFGHSEAKIEAIMND 192 (283)
Q Consensus 161 G~iY~atIvPs~T~~VVsvg~tEAKVEai~~d 192 (283)
|++..++|-+.-++ .+.+.+++|.+|...
T Consensus 28 GtV~sG~i~~Gd~v---~~~p~~~~VksIq~~ 56 (91)
T d1xe1a_ 28 GTVESGMIGVGFKV---KGPSGIGGIVRIERN 56 (91)
T ss_dssp EEEEEEEEETTCEE---ECSSCEEEEEEEEET
T ss_pred EEEeeCCcCCCCEE---EECCccEEEEEEEEc
Confidence 55555555555543 356778898887653
No 7
>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}
Probab=11.18 E-value=62 Score=24.59 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=16.3
Q ss_pred cceeeccccccceeeeeccCCccccCCCccccceEEecC
Q 023382 109 LPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPG 147 (283)
Q Consensus 109 lPlvlp~kv~r~k~LvE~eg~slDLsGD~GAVGR~~v~~ 147 (283)
+|=++|..+ .+++++|| |.+|.|..-.
T Consensus 30 ~Pk~~P~~i-----------~sveveGd-G~~GsIr~~~ 56 (153)
T d2bk0a1 30 LPKAAPGAY-----------KSVEIKGD-GGPGTLKIIT 56 (153)
T ss_dssp HHHHCGGGC-----------SEEEEESS-SSTTCEEEEE
T ss_pred cccccccee-----------eEEEEECC-CCCCeEEEEE
Confidence 466666644 34556677 7777765543
No 8
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.93 E-value=1.3e+02 Score=20.83 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=9.2
Q ss_pred CCCccccceEEec
Q 023382 134 SGDMGAVGRILVP 146 (283)
Q Consensus 134 sGD~GAVGR~~v~ 146 (283)
+|-.|.+|.|.|.
T Consensus 3 ~~~~~p~G~L~V~ 15 (136)
T d1wfja_ 3 SGSSGPHGTLEVV 15 (136)
T ss_dssp CCCCCCEEEEEEE
T ss_pred CCCCCCcEEEEEE
Confidence 4667778877764
No 9
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}
Probab=9.56 E-value=85 Score=23.52 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=15.1
Q ss_pred cceEEeecceeeeeeE----ecCccEEEEeecC
Q 023382 153 HEMFLDLKGTIYKTTL----VPSRTFCIVSFGH 181 (283)
Q Consensus 153 ~~l~LDLKG~iY~atI----vPs~T~~VVsvg~ 181 (283)
..+.|++.|..|+++. +|.+| +.|+.|.
T Consensus 41 ~~~~i~~~G~~~~~~~~NG~~PGP~-I~v~~GD 72 (157)
T d2bw4a1 41 KKLVIDREGTEIHAMTFNGSVPGPL-MVVHEND 72 (157)
T ss_dssp EEEECSTTCCEEEEEEETTBSSCCE-EEEETTC
T ss_pred EEEEECCCCeEEEEEEECCccCCce-EEEECCc
Confidence 3455555555544432 57776 4555554
No 10
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.34 E-value=36 Score=24.69 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=12.2
Q ss_pred chhhhhhhhhhhhhhc
Q 023382 258 KERYECWRTATATKES 273 (283)
Q Consensus 258 ~~~~~~~~~~~~~~~~ 273 (283)
..|||+||.+.-.|..
T Consensus 6 ~~RyE~fRRs~~~K~~ 21 (89)
T d1bh9b_ 6 LNRYEMYRRSAFPKAA 21 (89)
T ss_dssp HHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHHhhCCHHH
Confidence 4699999988766543
Done!