Query 023383
Match_columns 283
No_of_seqs 265 out of 1560
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:37:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3140 Predicted membrane pro 100.0 1E-32 2.2E-37 250.9 15.2 256 28-283 16-272 (275)
2 COG0398 Uncharacterized conser 100.0 4.1E-29 9E-34 222.6 24.2 150 88-245 34-186 (223)
3 PRK10847 hypothetical protein; 99.9 2.3E-20 4.9E-25 166.2 19.1 181 95-281 17-213 (219)
4 PF09335 SNARE_assoc: SNARE as 99.8 2.8E-20 6E-25 149.6 14.7 117 123-243 1-122 (123)
5 COG0586 DedA Uncharacterized m 99.8 5.6E-18 1.2E-22 149.7 18.6 138 108-250 18-169 (208)
6 COG1238 Predicted membrane pro 99.3 9.2E-11 2E-15 99.6 14.5 133 108-247 20-158 (161)
7 PF06695 Sm_multidrug_ex: Puta 95.6 0.36 7.9E-06 39.1 12.2 96 137-236 14-120 (121)
8 PRK01844 hypothetical protein; 81.8 6.5 0.00014 29.0 6.1 33 139-171 3-35 (72)
9 PRK11677 hypothetical protein; 81.7 4.3 9.2E-05 33.6 5.8 24 144-167 4-27 (134)
10 TIGR02359 thiW thiW protein. L 80.5 26 0.00056 29.8 10.3 33 124-156 32-64 (160)
11 PF06695 Sm_multidrug_ex: Puta 79.3 18 0.00039 29.2 8.7 51 98-155 67-120 (121)
12 PLN02953 phosphatidate cytidyl 76.9 13 0.00028 36.2 8.2 26 145-170 273-298 (403)
13 PRK00523 hypothetical protein; 76.8 11 0.00025 27.7 6.0 31 141-171 6-36 (72)
14 COG0398 Uncharacterized conser 69.6 83 0.0018 28.1 13.5 80 87-169 36-115 (223)
15 PF06295 DUF1043: Protein of u 69.4 10 0.00022 31.0 4.8 24 145-168 1-24 (128)
16 COG3763 Uncharacterized protei 65.8 27 0.00058 25.7 5.8 32 140-171 4-35 (71)
17 PRK09609 hypothetical protein; 65.1 34 0.00074 32.3 8.0 23 223-245 171-193 (312)
18 PF03672 UPF0154: Uncharacteri 62.3 19 0.00041 26.0 4.5 27 145-171 2-28 (64)
19 PF07155 ECF-ribofla_trS: ECF- 61.9 13 0.00028 31.2 4.3 33 124-157 37-69 (169)
20 COG4615 PvdE ABC-type sideroph 61.2 1E+02 0.0022 30.7 10.5 22 198-219 105-126 (546)
21 PF09512 ThiW: Thiamine-precur 57.9 26 0.00057 29.5 5.3 27 122-148 27-53 (150)
22 COG3105 Uncharacterized protei 56.6 43 0.00093 27.6 6.2 25 143-167 8-32 (138)
23 PF04246 RseC_MucC: Positive r 55.7 45 0.00098 27.0 6.4 38 131-168 82-121 (135)
24 COG3086 RseC Positive regulato 53.8 33 0.00071 28.8 5.2 36 132-167 91-127 (150)
25 PRK13661 hypothetical protein; 52.8 25 0.00055 30.5 4.6 33 124-157 39-71 (182)
26 PF06781 UPF0233: Uncharacteri 48.1 51 0.0011 25.2 5.1 29 43-71 26-54 (87)
27 COG4956 Integral membrane prot 45.4 2.2E+02 0.0049 27.1 9.8 35 148-187 42-76 (356)
28 PF07332 DUF1469: Protein of u 45.2 1.5E+02 0.0032 23.2 10.1 27 138-164 70-96 (121)
29 PRK00159 putative septation in 45.1 72 0.0016 24.4 5.5 31 42-72 25-55 (87)
30 PRK10862 SoxR reducing system 44.9 73 0.0016 26.8 6.1 24 144-167 104-127 (154)
31 PRK11901 hypothetical protein; 44.1 35 0.00076 32.3 4.4 32 43-74 30-62 (327)
32 PF09335 SNARE_assoc: SNARE as 41.7 1.6E+02 0.0034 22.6 10.4 37 135-171 8-44 (123)
33 PF12822 DUF3816: Protein of u 41.2 24 0.00051 29.4 2.6 28 129-156 34-61 (172)
34 COG1286 CvpA Uncharacterized m 41.0 2.4E+02 0.0051 24.3 13.8 116 130-253 11-129 (182)
35 COG4858 Uncharacterized membra 40.6 1.2E+02 0.0026 26.7 6.8 93 139-280 123-216 (226)
36 PRK12821 aspartyl/glutamyl-tRN 40.5 39 0.00083 33.6 4.2 25 129-153 101-125 (477)
37 PF03773 DUF318: Predicted per 39.8 2.8E+02 0.0061 25.6 9.9 17 94-110 212-228 (307)
38 KOG0474 Cl- channel CLC-7 and 39.8 37 0.0008 35.1 4.1 42 104-145 448-494 (762)
39 PF04123 DUF373: Domain of unk 39.0 3.6E+02 0.0078 25.9 13.4 43 121-167 163-205 (344)
40 COG4732 Predicted membrane pro 38.8 45 0.00097 28.3 3.8 29 122-150 36-64 (177)
41 PF13829 DUF4191: Domain of un 38.8 1.8E+02 0.0039 26.2 7.9 69 87-166 8-77 (224)
42 PF02417 Chromate_transp: Chro 38.8 2.4E+02 0.0051 23.7 8.5 55 194-249 46-101 (169)
43 TIGR00927 2A1904 K+-dependent 37.8 22 0.00047 38.6 2.2 44 204-247 1017-1060(1096)
44 PRK14472 F0F1 ATP synthase sub 35.3 63 0.0014 27.4 4.4 48 130-180 7-54 (175)
45 PF06570 DUF1129: Protein of u 34.9 1.7E+02 0.0036 25.5 7.1 55 221-281 147-202 (206)
46 COG4064 MtrG Tetrahydromethano 33.7 73 0.0016 23.4 3.7 24 133-156 50-73 (75)
47 TIGR03750 conj_TIGR03750 conju 33.5 2.5E+02 0.0054 22.5 8.3 10 177-186 83-92 (111)
48 PF11990 DUF3487: Protein of u 33.2 2.6E+02 0.0057 22.6 7.9 10 178-187 87-96 (121)
49 cd02433 Nodulin-21_like_2 Nodu 33.2 2.7E+02 0.0059 25.0 8.3 15 155-169 195-209 (234)
50 PHA02692 hypothetical protein; 33.1 1.1E+02 0.0023 22.5 4.5 19 42-60 39-57 (70)
51 COG2059 ChrA Chromate transpor 32.9 3.4E+02 0.0074 23.8 9.5 56 193-250 50-107 (195)
52 PF01102 Glycophorin_A: Glycop 32.8 84 0.0018 25.5 4.4 25 133-163 67-91 (122)
53 PF10337 DUF2422: Protein of u 32.5 4.9E+02 0.011 25.5 11.2 35 208-242 146-180 (459)
54 PF01544 CorA: CorA-like Mg2+ 31.4 27 0.00058 31.3 1.5 30 219-249 233-262 (292)
55 PF01788 PsbJ: PsbJ; InterPro 31.0 89 0.0019 20.4 3.4 21 43-65 7-27 (40)
56 PHA02819 hypothetical protein; 29.8 1.3E+02 0.0028 22.1 4.5 8 30-37 32-39 (71)
57 COG0586 DedA Uncharacterized m 29.3 3.2E+02 0.007 23.8 8.0 69 87-168 98-168 (208)
58 PF11139 DUF2910: Protein of u 29.0 3.8E+02 0.0083 23.2 11.6 16 174-189 179-194 (214)
59 PRK12287 tqsA pheromone autoin 29.0 3.9E+02 0.0084 25.1 9.0 55 90-144 187-246 (344)
60 PF12089 DUF3566: Transmembran 27.5 3.3E+02 0.0072 22.0 8.3 45 48-103 18-62 (119)
61 PF10319 7TM_GPCR_Srj: Serpent 27.3 5.4E+02 0.012 24.3 9.9 32 136-167 194-225 (310)
62 PF05915 DUF872: Eukaryotic pr 27.2 1.4E+02 0.003 24.0 4.8 87 6-126 3-91 (115)
63 PF12732 YtxH: YtxH-like prote 27.2 1.5E+02 0.0032 21.4 4.6 26 147-172 6-31 (74)
64 TIGR00915 2A0602 The (Largely 26.8 3.4E+02 0.0075 29.8 9.2 12 225-236 978-989 (1044)
65 COG1300 SpoIIM Uncharacterized 26.8 4.4E+02 0.0096 23.2 9.7 35 125-159 82-116 (207)
66 PF03601 Cons_hypoth698: Conse 26.2 4.9E+02 0.011 24.3 9.0 28 140-167 83-111 (305)
67 cd02434 Nodulin-21_like_3 Nodu 25.3 4.4E+02 0.0096 23.4 8.2 13 156-168 187-199 (225)
68 TIGR02840 spore_YtaF putative 24.3 4.8E+02 0.01 22.8 11.5 36 208-247 144-179 (206)
69 PF09512 ThiW: Thiamine-precur 24.3 3.6E+02 0.0079 22.7 6.9 75 89-164 30-115 (150)
70 PRK11281 hypothetical protein; 23.9 1.1E+03 0.023 26.6 16.2 28 221-248 684-712 (1113)
71 PRK11085 magnesium/nickel/coba 23.8 2.3E+02 0.0049 26.8 6.3 59 218-279 254-312 (316)
72 COG2261 Predicted membrane pro 23.7 2.1E+02 0.0045 21.7 4.8 34 131-164 41-79 (82)
73 PF13038 DUF3899: Domain of un 23.0 77 0.0017 23.8 2.5 25 40-64 62-86 (92)
74 TIGR00937 2A51 chromate transp 23.0 6.6E+02 0.014 24.1 9.4 54 194-248 38-92 (368)
75 PF13858 DUF4199: Protein of u 22.9 2.9E+02 0.0062 22.6 6.2 37 138-174 66-102 (163)
76 TIGR00914 2A0601 heavy metal e 22.8 8.1E+02 0.017 27.0 11.1 13 225-237 986-998 (1051)
77 KOG1109 Vacuole membrane prote 22.6 56 0.0012 31.8 1.9 87 148-234 217-321 (440)
78 PF12273 RCR: Chitin synthesis 22.5 72 0.0016 25.7 2.4 16 48-63 1-16 (130)
79 PRK11404 putative PTS system 22.4 8E+02 0.017 24.6 16.4 34 202-244 389-422 (482)
80 COG0598 CorA Mg2+ and Co2+ tra 22.2 1.6E+02 0.0035 27.5 5.0 60 218-280 260-319 (322)
81 PF12575 DUF3753: Protein of u 21.8 2.1E+02 0.0046 21.1 4.4 16 48-63 47-62 (72)
82 PF06305 DUF1049: Protein of u 21.7 2.8E+02 0.0061 19.1 6.2 10 176-185 56-65 (68)
83 PF12072 DUF3552: Domain of un 21.5 1.4E+02 0.003 26.1 4.1 27 143-169 3-29 (201)
84 COG0575 CdsA CDP-diglyceride s 21.1 2.4E+02 0.0053 25.5 5.8 28 143-170 136-163 (265)
85 TIGR00383 corA magnesium Mg(2+ 20.8 3.2E+02 0.007 25.0 6.7 59 218-279 256-315 (318)
86 PRK09546 zntB zinc transporter 20.6 2.7E+02 0.0059 25.8 6.2 58 220-280 264-322 (324)
87 PF10031 DUF2273: Small integr 20.5 2.9E+02 0.0063 18.8 5.2 25 135-164 25-49 (51)
88 KOG4753 Predicted membrane pro 20.4 3.4E+02 0.0073 22.1 5.6 23 43-65 45-67 (124)
89 PF04226 Transgly_assoc: Trans 20.3 2.8E+02 0.006 18.5 4.8 22 143-164 25-46 (48)
No 1
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1e-32 Score=250.93 Aligned_cols=256 Identities=45% Similarity=0.799 Sum_probs=241.5
Q ss_pred CCCCCCcccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHcccc-cccccccCCCHHhHHHHHHHHHHhHhhCCch
Q 023383 28 KEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAA-DYGKLKLPRTIADLRLLKDNLATYAQDYPVP 106 (283)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~L~~~~~~~P~~-~~~~l~~p~~l~~l~~l~~~l~~~~~~~~~~ 106 (283)
....+|+.+...|++......|+...++++|......+.+.|...|.. |...+++|++++|...+.+-+++|.+.+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~if~~~~~~l~~i~~s~~~~~~~~~l~lp~~i~~~~~L~~vl~~y~~~~~a~ 95 (275)
T KOG3140|consen 16 LLVVGQRAGQFLKKDELLLSLMSIAERLGIFLSFSLVLVYIYLSAPALSELGVLKLPRDILDLRGLGAVLRKYKATYFAA 95 (275)
T ss_pred hhccchhhhhhcchhhhhhhhccHHHHHHHhhHHHHHHHHHHHcccCccccccccccchhHHHHHHHHHHHHHHhhhHHH
Confidence 345677777777777888889999999999999999999999999987 5778999999999999999999999999999
Q ss_pred HHHHHHHhhhhhceeecChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhhhHHHHHHHHHHHH
Q 023383 107 FIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAK 186 (283)
Q Consensus 107 ~~l~f~~l~i~~~~~~iPg~~~L~l~aG~lfG~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~~~~~~~~~~~~~l~k 186 (283)
..++|++.|++.|.+++||..++++.+|++||+|.|.++++.++++|+++||++++.+||+.+.++++++...++..+++
T Consensus 96 ~~~~~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~~~~~~~~~ 175 (275)
T KOG3140|consen 96 VLLGFIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIAFLQQDVEL 175 (275)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHhHHHHhhhccccchhHHHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHH
Q 023383 187 RREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLI 266 (283)
Q Consensus 187 ~~~~~~~~vll~Rl~P~~P~~lin~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~~l~~~~s~~~~~s~~~~~~l~~l 266 (283)
++++.++++.+.|+.|+.|++++|+++++.+++++.|++++++|++|.+++++..|+.+.++++.++.+++.+...+...
T Consensus 176 ~~~~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l~s~~~~~~~~~~~~l~~~ 255 (275)
T KOG3140|consen 176 NRNSLLNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASLTSASDAFSWSSILTLLEL 255 (275)
T ss_pred cccchhhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhhcccccccCCcchHHHHHH
Confidence 98888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcC
Q 023383 267 GSVIILPTLLKRKRIYE 283 (283)
Q Consensus 267 ~~~~llp~~~~r~~~~~ 283 (283)
+++.++|...+||+..|
T Consensus 256 ~~~~l~~~~l~kk~~~~ 272 (275)
T KOG3140|consen 256 ALLSLLPTLLKKKRKLK 272 (275)
T ss_pred HHHHHhHHHHhhhhhhh
Confidence 99999999999988653
No 2
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=4.1e-29 Score=222.60 Aligned_cols=150 Identities=29% Similarity=0.506 Sum_probs=133.0
Q ss_pred hHHHHHHHHHHhHhhCCchHHHH-HHHhhhhhceeecChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcH
Q 023383 88 DLRLLKDNLATYAQDYPVPFIIG-YCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGR 166 (283)
Q Consensus 88 ~l~~l~~~l~~~~~~~~~~~~l~-f~~l~i~~~~~~iPg~~~L~l~aG~lfG~~~G~~l~~ig~~lGa~i~y~lgR~lg~ 166 (283)
+.+++++|++++ +.++++. |++.++.....++|+++ +++++|++||+++|++++++|+++||+++|+++|++||
T Consensus 34 ~~~~l~~~i~~~----g~~~pl~~fil~~l~~~~~~iP~~i-l~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr 108 (223)
T COG0398 34 DPETLREWIQAY----GALGPLVFFILLYLVATLPIIPGSI-LTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGR 108 (223)
T ss_pred CHHHHHHHHHHc----CchHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 566777777665 4456666 77777777778899998 69999999999999999999999999999999999999
Q ss_pred HHHhhhhh--HHHHHHHHHHHHhccchHhHHHHhhhccccchhHHHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHHH
Q 023383 167 PLVSWFWP--EKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLA 244 (283)
Q Consensus 167 ~~v~~~~~--~~~~~~~~~l~k~~~~~~~~vll~Rl~P~~P~~lin~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~~ 244 (283)
+.++++.+ ++.++++++++|+ + ++.++++|++|++|++++||+||++++++++|.++|++|++|++++|+++|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~--g-~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~~ 185 (223)
T COG0398 109 DWVLKFVGGKEKVQRIDAGLERN--G-FWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGSA 185 (223)
T ss_pred HHHHHHhcccHHHHHHHHHHHhC--C-hHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99988765 5788999999986 3 78999999999999999999999999999999999999999999999999964
Q ss_pred h
Q 023383 245 L 245 (283)
Q Consensus 245 l 245 (283)
.
T Consensus 186 ~ 186 (223)
T COG0398 186 F 186 (223)
T ss_pred H
Confidence 3
No 3
>PRK10847 hypothetical protein; Provisional
Probab=99.86 E-value=2.3e-20 Score=166.20 Aligned_cols=181 Identities=20% Similarity=0.258 Sum_probs=132.8
Q ss_pred HHHHhHhhCCchH-HHHHHHhhhhh---ceeecChHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHH
Q 023383 95 NLATYAQDYPVPF-IIGYCSTYIFM---QTFMIPGTIFMSLLAGALFG-------VIRGLILVVFNATAGASSCFFLSKL 163 (283)
Q Consensus 95 ~l~~~~~~~~~~~-~l~f~~l~i~~---~~~~iPg~~~L~l~aG~lfG-------~~~G~~l~~ig~~lGa~i~y~lgR~ 163 (283)
.++++.++++.++ .++|+.++... ...++|++.+ .+++|++.+ ++..++.+++|+++|+.++|++||+
T Consensus 17 ~~~~~~~~~g~~~y~~lfl~~~le~~~~~~~~lPge~~-l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~ 95 (219)
T PRK10847 17 HLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSL-LFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRL 95 (219)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCCchHH-HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455443 23566666554 2346899984 677887754 5677899999999999999999999
Q ss_pred hcHHHHhhh----h-hHHHHHHHHHHHHhccchHhHHHHhhhccccchhHHHHhhhccCCChHHHHHHHHHhHHHHHHHH
Q 023383 164 IGRPLVSWF----W-PEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYIT 238 (283)
Q Consensus 164 lg~~~v~~~----~-~~~~~~~~~~l~k~~~~~~~~vll~Rl~P~~P~~lin~~aG~~~i~~~~F~lat~iG~~P~~~i~ 238 (283)
+|++..++. . ++++++.+++++|++ .+.+++.|++|+++ ++++++||+++||+++|++.+.+|.++|+.++
T Consensus 96 ~G~~~l~~~~~~~~~~~~l~~~~~~~~r~G---~~~v~i~RfiP~~R-~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~ 171 (219)
T PRK10847 96 FGEKLFSNPNSKIFRRSYLDKTHQFYEKHG---GKTIILARFVPIVR-TFAPFVAGMGHMSYRHFAAYNVIGALLWVLLF 171 (219)
T ss_pred hCHHHhhccccccCCHHHHHHHHHHHHHcC---CEEEEeeCCccchH-hHHHHHhHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 999987532 2 245788899999873 35899999999987 68999999999999999999999999999999
Q ss_pred HHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023383 239 VRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKRI 281 (283)
Q Consensus 239 ~~~G~~l~~~~s~~~~~s~~~~~~l~~l~~~~llp~~~~r~~~ 281 (283)
+.+|+.+++.....+... ..+..++++.++..+..++|||++
T Consensus 172 ~~~Gy~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~ 213 (219)
T PRK10847 172 TYAGYFFGTLPFVQDNLK-LLIVGIIVVSILPGVIEIWRHKRA 213 (219)
T ss_pred HHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999987643333221 122233333444555667776654
No 4
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.85 E-value=2.8e-20 Score=149.56 Aligned_cols=117 Identities=30% Similarity=0.526 Sum_probs=102.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhh-h-HHHHH---HHHHHHHhccchHhHHHH
Q 023383 123 IPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFW-P-EKLRF---FQAEIAKRREKLLNYMLF 197 (283)
Q Consensus 123 iPg~~~L~l~aG~lfG~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~~~-~-~~~~~---~~~~l~k~~~~~~~~vll 197 (283)
+|++++ .+++|++||++.|++++++|+++|+.++|+++|+++++..++.. + ++.++ .+++++|+ +++.+++
T Consensus 1 iP~~~~-~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~l~~ 76 (123)
T PF09335_consen 1 IPGSIL-LIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQKY---GFWVLFL 76 (123)
T ss_pred CChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHhhh---hHHHHHH
Confidence 699985 78999999999999999999999999999999999965554433 2 33444 67777665 3678999
Q ss_pred hhhccccchhHHHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHH
Q 023383 198 LRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGL 243 (283)
Q Consensus 198 ~Rl~P~~P~~lin~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~ 243 (283)
.|++|++|++++|+++|++++|+++|++++++|.+|++.+++++|+
T Consensus 77 ~~~~P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~ 122 (123)
T PF09335_consen 77 SRFIPGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGY 122 (123)
T ss_pred HHHHHHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999996
No 5
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.79 E-value=5.6e-18 Score=149.74 Aligned_cols=138 Identities=19% Similarity=0.386 Sum_probs=118.2
Q ss_pred HHHHHHhhhhh---ceeecChHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhhh-----
Q 023383 108 IIGYCSTYIFM---QTFMIPGTIFMSLLAGAL-----FGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWP----- 174 (283)
Q Consensus 108 ~l~f~~l~i~~---~~~~iPg~~~L~l~aG~l-----fG~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~~~~----- 174 (283)
..+|+..+.+. ...++|++++ .+++|++ .+++...+.+++|+++|+.+.|++||++|++..++..+
T Consensus 18 ~~~f~~~f~e~~l~~~~~lPge~i-L~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~~~ 96 (208)
T COG0586 18 LGVFLILFLESGLLVGPPLPGEVL-LLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRLLK 96 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCCchHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhccCC
Confidence 34555555555 5568999995 6788887 45788899999999999999999999999998877654
Q ss_pred -HHHHHHHHHHHHhccchHhHHHHhhhccccchhHHHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Q 023383 175 -EKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQS 250 (283)
Q Consensus 175 -~~~~~~~~~l~k~~~~~~~~vll~Rl~P~~P~~lin~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~~l~~~~s 250 (283)
++++|.+++++||+ .+.+++.|++|.+ .+++++.||+++||+++|.+.+++|.+.|..++++.|..+++.-+
T Consensus 97 ~~~l~~a~~~f~r~G---~~~vf~~RFip~v-Rt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~~~~ 169 (208)
T COG0586 97 RKKLDKAELLFERHG---LFAIFLGRFIPGV-RTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEVID 169 (208)
T ss_pred HHHHHHHHHHHHHcC---chhhhhhcccchh-HhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 46888899999883 4699999999998 579999999999999999999999999999999999999998643
No 6
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.29 E-value=9.2e-11 Score=99.58 Aligned_cols=133 Identities=14% Similarity=0.211 Sum_probs=104.5
Q ss_pred HHHHHHhhhhhceeecChHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhhh---HHHHHHHH
Q 023383 108 IIGYCSTYIFMQTFMIPGTIFMSLLAGAL--FGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWP---EKLRFFQA 182 (283)
Q Consensus 108 ~l~f~~l~i~~~~~~iPg~~~L~l~aG~l--fG~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~~~~---~~~~~~~~ 182 (283)
..+|+..|+..+.+|+|.+++ +++..+ +.+|.-..++++|+++|++++|++||..++...++... ++.++.++
T Consensus 20 ~~Lf~vaF~eat~lP~~sE~~--l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~~~~~~~~~~~~~ 97 (161)
T COG1238 20 AGLFIVAFLEATLLPVPSEVL--LAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWFPGSEEALEKLQE 97 (161)
T ss_pred HHHHHHHHHHHHhcCCChHHH--HHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhhcchHHHHHHHHH
Confidence 467888888899999999984 333333 56888899999999999999999999998887765332 34555554
Q ss_pred -HHHHhccchHhHHHHhhhccccchhHHHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHHHhcc
Q 023383 183 -EIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGD 247 (283)
Q Consensus 183 -~l~k~~~~~~~~vll~Rl~P~~P~~lin~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~~l~~ 247 (283)
+.+|+ + .+.+++.= +|.+| ++++.+||..++++++|++..++|....-++.+++....++
T Consensus 98 ~~~~ry--g-~~~ll~s~-lp~ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~~~ 158 (161)
T COG1238 98 KWYRRY--G-VWTLLLSW-LPPIG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLGGE 158 (161)
T ss_pred HHHHHH--H-HHHHHHHh-ccccc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 55555 3 44666554 55588 99999999999999999999999999999998888766543
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=95.64 E-value=0.36 Score=39.10 Aligned_cols=96 Identities=17% Similarity=0.199 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHH-----Hhhhh---hHHHHHHHHHHHHhccchHhHHHHhhhccccc---
Q 023383 137 FGVIRGLILVVFNATAGASSCFFLSKLIGRPL-----VSWFW---PEKLRFFQAEIAKRREKLLNYMLFLRITPSLP--- 205 (283)
Q Consensus 137 fG~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~-----v~~~~---~~~~~~~~~~l~k~~~~~~~~vll~Rl~P~~P--- 205 (283)
++++..++++.+|+++.....+++-+.+-+-. .++.. .+|.++-++.++|++ +..+++.=.+| +|
T Consensus 14 l~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~kyg---~~GL~lFVaIP-lP~TG 89 (121)
T PF06695_consen 14 LPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIEKYG---FWGLALFVAIP-LPGTG 89 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHhCC-CCcch
Confidence 34788889999999988777666655543221 12211 233445566677662 44554443455 34
Q ss_pred hhHHHHhhhccCCChHHHHHHHHHhHHHHHH
Q 023383 206 NLFINLASPIVDIPFHIFFLATLIGLIPASY 236 (283)
Q Consensus 206 ~~lin~~aG~~~i~~~~F~lat~iG~~P~~~ 236 (283)
-+.-+.+|-+.+++.++=+++..+|.+-..+
T Consensus 90 ~wtgal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 90 AWTGALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 5677899999999999999999999876543
No 8
>PRK01844 hypothetical protein; Provisional
Probab=81.80 E-value=6.5 Score=29.00 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhh
Q 023383 139 VIRGLILVVFNATAGASSCFFLSKLIGRPLVSW 171 (283)
Q Consensus 139 ~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~ 171 (283)
.|..+++.+++..+|..++|+++|+..++.+++
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666778899999999999999887666654
No 9
>PRK11677 hypothetical protein; Provisional
Probab=81.66 E-value=4.3 Score=33.61 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=19.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcHH
Q 023383 144 ILVVFNATAGASSCFFLSKLIGRP 167 (283)
Q Consensus 144 ~l~~ig~~lGa~i~y~lgR~lg~~ 167 (283)
+++++|.++|.+++|+++|+..+.
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccch
Confidence 567788999999999999986544
No 10
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=80.45 E-value=26 Score=29.84 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 023383 124 PGTIFMSLLAGALFGVIRGLILVVFNATAGASS 156 (283)
Q Consensus 124 Pg~~~L~l~aG~lfG~~~G~~l~~ig~~lGa~i 156 (283)
|-+-+.++++|.+||||+|.+...+++.++...
T Consensus 32 ~~~~i~~vlaavllGP~~g~~~a~i~~ll~~l~ 64 (160)
T TIGR02359 32 PVQHFVNVIAGVLLGPWYALAVAFIIGLLRNTL 64 (160)
T ss_pred ChhHHHHHHHHHHHchHHHHHHHHHHHHHHHHh
Confidence 434346899999999999999988888777664
No 11
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=79.31 E-value=18 Score=29.15 Aligned_cols=51 Identities=14% Similarity=0.254 Sum_probs=29.7
Q ss_pred HhHhhCCchHHHHHHHhhhhhceeecChHH-HHHHHHHHHHH--HHHHHHHHHHHHHHhHH
Q 023383 98 TYAQDYPVPFIIGYCSTYIFMQTFMIPGTI-FMSLLAGALFG--VIRGLILVVFNATAGAS 155 (283)
Q Consensus 98 ~~~~~~~~~~~l~f~~l~i~~~~~~iPg~~-~L~l~aG~lfG--~~~G~~l~~ig~~lGa~ 155 (283)
+..+.++++++.+|+ ..|+|++- ....+.+.++| ....+....+|..++++
T Consensus 67 ~~i~kyg~~GL~lFV-------aIPlP~TG~wtgal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 67 KKIEKYGFWGLALFV-------AIPLPGTGAWTGALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHHHHHhHHHHHHHH-------hCCCCcchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 334444555555553 35778774 22445667777 46666677777766654
No 12
>PLN02953 phosphatidate cytidylyltransferase
Probab=76.93 E-value=13 Score=36.21 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=19.3
Q ss_pred HHHHHHHHhHHHHHHHHHHhcHHHHh
Q 023383 145 LVVFNATAGASSCFFLSKLIGRPLVS 170 (283)
Q Consensus 145 l~~ig~~lGa~i~y~lgR~lg~~~v~ 170 (283)
+.++......+.+|+.||.+||..+.
T Consensus 273 ~~~~~vw~~Di~AY~~G~~fGk~kl~ 298 (403)
T PLN02953 273 ISFSGVIATDTFAFLGGKAFGRTPLT 298 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 34445666788999999999987654
No 13
>PRK00523 hypothetical protein; Provisional
Probab=76.83 E-value=11 Score=27.74 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhcHHHHhh
Q 023383 141 RGLILVVFNATAGASSCFFLSKLIGRPLVSW 171 (283)
Q Consensus 141 ~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~ 171 (283)
..+++.+++..+|.+++|+++|+..++.+++
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k~l~~ 36 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKKQIRE 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778899999999999887666554
No 14
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=69.58 E-value=83 Score=28.08 Aligned_cols=80 Identities=18% Similarity=0.037 Sum_probs=48.2
Q ss_pred HhHHHHHHHHHHhHhhCCchHHHHHHHhhhhhceeecChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcH
Q 023383 87 ADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGR 166 (283)
Q Consensus 87 ~~l~~l~~~l~~~~~~~~~~~~l~f~~l~i~~~~~~iPg~~~L~l~aG~lfG~~~G~~l~~ig~~lGa~i~y~lgR~lg~ 166 (283)
+.+++..+....+..- ...+++.+.-.+......+-+..-..+-|-..|.+...+=+++|+++.=.++=..+|..-+
T Consensus 36 ~~l~~~i~~~g~~~pl---~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~~~~ 112 (223)
T COG0398 36 ETLREWIQAYGALGPL---VFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDWVL 112 (223)
T ss_pred HHHHHHHHHcCchHHH---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3555555555555432 2133333333444444445554335567888888888888888888888888788886555
Q ss_pred HHH
Q 023383 167 PLV 169 (283)
Q Consensus 167 ~~v 169 (283)
+.+
T Consensus 113 ~~~ 115 (223)
T COG0398 113 KFV 115 (223)
T ss_pred HHh
Confidence 443
No 15
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=69.37 E-value=10 Score=30.97 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=19.2
Q ss_pred HHHHHHHHhHHHHHHHHHHhcHHH
Q 023383 145 LVVFNATAGASSCFFLSKLIGRPL 168 (283)
Q Consensus 145 l~~ig~~lGa~i~y~lgR~lg~~~ 168 (283)
|+++|.++|.+++|+++|...+..
T Consensus 1 y~~i~lvvG~iiG~~~~r~~~~~~ 24 (128)
T PF06295_consen 1 YAIIGLVVGLIIGFLIGRLTSSNQ 24 (128)
T ss_pred ChHHHHHHHHHHHHHHHHHhccch
Confidence 467888899999999999876553
No 16
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.85 E-value=27 Score=25.66 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhh
Q 023383 140 IRGLILVVFNATAGASSCFFLSKLIGRPLVSW 171 (283)
Q Consensus 140 ~~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~ 171 (283)
|.+.++..++-..|...+|+++|..-.+.+++
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~~~k~lk~ 35 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQMKKQLKD 35 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666677777888888899999876555543
No 17
>PRK09609 hypothetical protein; Provisional
Probab=65.13 E-value=34 Score=32.27 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=13.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHh
Q 023383 223 FFLATLIGLIPASYITVRAGLAL 245 (283)
Q Consensus 223 F~lat~iG~~P~~~i~~~~G~~l 245 (283)
++.++.+..+-..+++...|...
T Consensus 171 ~i~a~ii~~~i~l~i~~~~~~~~ 193 (312)
T PRK09609 171 WIAALIILVIIILFIYFVVGFLD 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 45555555566666666666543
No 18
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=62.33 E-value=19 Score=25.99 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHHHHHHHHhcHHHHhh
Q 023383 145 LVVFNATAGASSCFFLSKLIGRPLVSW 171 (283)
Q Consensus 145 l~~ig~~lGa~i~y~lgR~lg~~~v~~ 171 (283)
+..++..+|.+++|+++|+..++.+++
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k~l~~ 28 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEKQLKE 28 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888999999999887666644
No 19
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=61.91 E-value=13 Score=31.15 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 023383 124 PGTIFMSLLAGALFGVIRGLILVVFNATAGASSC 157 (283)
Q Consensus 124 Pg~~~L~l~aG~lfG~~~G~~l~~ig~~lGa~i~ 157 (283)
|+.. ...++|.+|||..|++...+|..++..+.
T Consensus 37 ~~~~-~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 37 LGSI-PIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred hhhH-HHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 3445 47899999999999999999988888744
No 20
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=61.19 E-value=1e+02 Score=30.65 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=16.8
Q ss_pred hhhccccchhHHHHhhhccCCC
Q 023383 198 LRITPSLPNLFINLASPIVDIP 219 (283)
Q Consensus 198 ~Rl~P~~P~~lin~~aG~~~i~ 219 (283)
.|++|..-.++-|+.++.+++|
T Consensus 105 ~rlla~L~~Dvr~ISf~~s~lp 126 (546)
T COG4615 105 ARLLAGLTSDVRNISFAFSRLP 126 (546)
T ss_pred cchhhhhcccccceeehHhhhH
Confidence 5777777788888887777665
No 21
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=57.95 E-value=26 Score=29.53 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=20.7
Q ss_pred ecChHHHHHHHHHHHHHHHHHHHHHHH
Q 023383 122 MIPGTIFMSLLAGALFGVIRGLILVVF 148 (283)
Q Consensus 122 ~iPg~~~L~l~aG~lfG~~~G~~l~~i 148 (283)
+.|.+=++++++|.+.|||++...+.+
T Consensus 27 ~~P~QH~iNviaaVlLGP~ya~~~Af~ 53 (150)
T PF09512_consen 27 CFPMQHMINVIAAVLLGPWYAVAMAFI 53 (150)
T ss_pred cChHHHHHHHHHHHHhchHHHHHHHHH
Confidence 457776679999999999988766554
No 22
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.59 E-value=43 Score=27.59 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcHH
Q 023383 143 LILVVFNATAGASSCFFLSKLIGRP 167 (283)
Q Consensus 143 ~~l~~ig~~lGa~i~y~lgR~lg~~ 167 (283)
..++.+|-++|-+++|++.|..-+.
T Consensus 8 W~~a~igLvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 8 WEYALIGLVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchh
Confidence 3567788899999999999976444
No 23
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=55.66 E-value=45 Score=26.97 Aligned_cols=38 Identities=29% Similarity=0.544 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHhcHHH
Q 023383 131 LLAGALFGVIRG--LILVVFNATAGASSCFFLSKLIGRPL 168 (283)
Q Consensus 131 l~aG~lfG~~~G--~~l~~ig~~lGa~i~y~lgR~lg~~~ 168 (283)
++.|+..|-..+ -..+.+++.+|..++|++.|++.++.
T Consensus 82 li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~~ 121 (135)
T PF04246_consen 82 LIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRRL 121 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444333 46778888888889999999886553
No 24
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=53.81 E-value=33 Score=28.85 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=24.3
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHhcHH
Q 023383 132 LAGALFGVI-RGLILVVFNATAGASSCFFLSKLIGRP 167 (283)
Q Consensus 132 ~aG~lfG~~-~G~~l~~ig~~lGa~i~y~lgR~lg~~ 167 (283)
++..+++-. ..=.++.+++.+|...+|++.|.+-|+
T Consensus 91 v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRk 127 (150)
T COG3086 91 LGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRK 127 (150)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444432 223577889999999999999877543
No 25
>PRK13661 hypothetical protein; Provisional
Probab=52.81 E-value=25 Score=30.52 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 023383 124 PGTIFMSLLAGALFGVIRGLILVVFNATAGASSC 157 (283)
Q Consensus 124 Pg~~~L~l~aG~lfG~~~G~~l~~ig~~lGa~i~ 157 (283)
|+..+ ..+.+++|||..|++...+|..++..+.
T Consensus 39 ~~~~~-i~l~a~lfGp~~G~lvg~ig~~L~dll~ 71 (182)
T PRK13661 39 LAYAF-LALFAVLFGPVVGFLVGFIGHALKDFIA 71 (182)
T ss_pred eHHHH-HHHHHHHHChHHHHHHHHHHHHHHHHHc
Confidence 45553 6788999999999999998888887763
No 26
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=48.12 E-value=51 Score=25.22 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=20.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 023383 43 RFPLTHWEFAAFVGVFLLFVTGLFCIYLT 71 (283)
Q Consensus 43 ~~~l~~w~~~~~~~~~~~~~~~L~~~~~~ 71 (283)
+.|-++|-.-+.++++++-++-++..|..
T Consensus 26 ~~~sp~W~~p~m~~lmllGL~WiVvyYi~ 54 (87)
T PF06781_consen 26 AKPSPRWYAPLMLGLMLLGLLWIVVYYIS 54 (87)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHhhhhcc
Confidence 46778899888888888766666554433
No 27
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=45.43 E-value=2.2e+02 Score=27.07 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=21.1
Q ss_pred HHHHHhHHHHHHHHHHhcHHHHhhhhhHHHHHHHHHHHHh
Q 023383 148 FNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKR 187 (283)
Q Consensus 148 ig~~lGa~i~y~lgR~lg~~~v~~~~~~~~~~~~~~l~k~ 187 (283)
+.+.+||.+.|+++-++++.... -++++++++.|.
T Consensus 42 v~~ligai~~~li~~~~~~~~~~-----~~~~le~~i~k~ 76 (356)
T COG4956 42 VDALIGAIIFFLISFWFGKYVLN-----WLKRLEEQIRKL 76 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhc
Confidence 44677888888887776544332 234555555553
No 28
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=45.23 E-value=1.5e+02 Score=23.22 Aligned_cols=27 Identities=7% Similarity=-0.130 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 023383 138 GVIRGLILVVFNATAGASSCFFLSKLI 164 (283)
Q Consensus 138 G~~~G~~l~~ig~~lGa~i~y~lgR~l 164 (283)
++|.+++++.....+.+.++++.++.-
T Consensus 70 ~~~~a~liv~~~~l~la~i~~~~~~~~ 96 (121)
T PF07332_consen 70 PPWLAFLIVAGLYLLLALILLLIGRRR 96 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777666666667677666543
No 29
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=45.13 E-value=72 Score=24.44 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=23.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHc
Q 023383 42 ERFPLTHWEFAAFVGVFLLFVTGLFCIYLTM 72 (283)
Q Consensus 42 ~~~~l~~w~~~~~~~~~~~~~~~L~~~~~~~ 72 (283)
+..|-++|-..+.++++++-++-++..|...
T Consensus 25 ~~~~sp~W~~~~m~glm~~GllWlvvyYl~~ 55 (87)
T PRK00159 25 KAGPSSVWYVVLMLGLMLIGLAWLVVNYLAG 55 (87)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3677888999999999988777776666543
No 30
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=44.85 E-value=73 Score=26.77 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcHH
Q 023383 144 ILVVFNATAGASSCFFLSKLIGRP 167 (283)
Q Consensus 144 ~l~~ig~~lGa~i~y~lgR~lg~~ 167 (283)
..+.+++.+|-.++|++.|++.++
T Consensus 104 ~~~~~~~~~g~~~g~~~~r~~~~~ 127 (154)
T PRK10862 104 LAALCGALLGGVGGFLLARGLSRK 127 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677788888888888876443
No 31
>PRK11901 hypothetical protein; Reviewed
Probab=44.07 E-value=35 Score=32.35 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=24.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHH-HHccc
Q 023383 43 RFPLTHWEFAAFVGVFLLFVTGLFCIY-LTMPA 74 (283)
Q Consensus 43 ~~~l~~w~~~~~~~~~~~~~~~L~~~~-~~~P~ 74 (283)
++|++|-+..+.+||++++++.+.+-- +-.|.
T Consensus 30 k~~vSRQh~MiGiGilVLlLLIi~IgSALksP~ 62 (327)
T PRK11901 30 KLAVSRQHMMIGIGILVLLLLIIAIGSALKSPT 62 (327)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 899999999999999988887655532 33354
No 32
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=41.73 E-value=1.6e+02 Score=22.56 Aligned_cols=37 Identities=30% Similarity=0.238 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhh
Q 023383 135 ALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSW 171 (283)
Q Consensus 135 ~lfG~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~ 171 (283)
..-|...|.....+.+++|+.++-.+...+||...++
T Consensus 8 ~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~ 44 (123)
T PF09335_consen 8 IAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRR 44 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4567888999999999999999999999999876643
No 33
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=41.25 E-value=24 Score=29.37 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 023383 129 MSLLAGALFGVIRGLILVVFNATAGASS 156 (283)
Q Consensus 129 L~l~aG~lfG~~~G~~l~~ig~~lGa~i 156 (283)
..+++|+++||+.|.+...+...++...
T Consensus 34 ~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 34 PIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999988888776666554
No 34
>COG1286 CvpA Uncharacterized membrane protein, required for colicin V production [General function prediction only]
Probab=40.96 E-value=2.4e+02 Score=24.35 Aligned_cols=116 Identities=20% Similarity=0.203 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHhcHHHHhhhhhHHHHHHHHHHHHhccchHhHHHHhhhccccch
Q 023383 130 SLLAGALFGVIRGLI---LVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPN 206 (283)
Q Consensus 130 ~l~aG~lfG~~~G~~---l~~ig~~lGa~i~y~lgR~lg~~~v~~~~~~~~~~~~~~l~k~~~~~~~~vll~Rl~P~~P~ 206 (283)
.++.+.+.|...|++ ++.+|..+++.++|...+.++....+..-+++.+......- + .....++=..=+
T Consensus 11 ii~~~~~~g~~RGfi~e~~sl~s~i~a~~vA~~fy~~~~~~~~~~i~~~~~~~~~~~~~------~--f~~~l~v~~~i~ 82 (182)
T COG1286 11 IIVASFLLGLRRGFIREVLSLLSWILAAFVASLFYKPLAPLLREYIPYPNIAIGIAIAI------F--FVILLIVGAFVN 82 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCChhHHHhhHHHH------H--HHHHHHHHHHHH
Confidence 345566677777764 45556666666666666555433222221222222111110 1 111111110001
Q ss_pred hHHHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHHHhcccccchh
Q 023383 207 LFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKD 253 (283)
Q Consensus 207 ~lin~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~~l~~~~s~~~ 253 (283)
..+....-.++...-+-+++.+.|.+.+..+...+-..+.......+
T Consensus 83 ~~i~~~i~~~~l~~~dR~LG~~fG~~~g~lil~~~~~~l~~~~~~~~ 129 (182)
T COG1286 83 SLIAFLIIFSGLGFIDRILGFLFGALRGVLILAIVLFFLAGITGFKD 129 (182)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccc
Confidence 34445555578889999999999999996666655555555544443
No 35
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=40.64 E-value=1.2e+02 Score=26.72 Aligned_cols=93 Identities=17% Similarity=0.292 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhhhHHHHHHHHHHHHhccchHhHHHHhhhccccchhHHHHhhhccCC
Q 023383 139 VIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDI 218 (283)
Q Consensus 139 ~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~~~~~~~~~~~~~l~k~~~~~~~~vll~Rl~P~~P~~lin~~aG~~~i 218 (283)
+..|.+...+.+..|....|.+-|+.-|. .+++ .+|.
T Consensus 123 ~~~GlItlll~a~vgGfamy~my~y~yr~-----~ad~---------sqr~----------------------------- 159 (226)
T COG4858 123 QVYGLITLLLTAVVGGFAMYIMYYYAYRM-----RADN---------SQRP----------------------------- 159 (226)
T ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHHHh-----hccc---------ccCC-----------------------------
Confidence 56777777778888888887776664221 1110 1111
Q ss_pred ChHHHHHHHHHhHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH-Hhhh
Q 023383 219 PFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLL-KRKR 280 (283)
Q Consensus 219 ~~~~F~lat~iG~~P~~~i~~~~G~~l~~~~s~~~~~s~~~~~~l~~l~~~~llp~~~-~r~~ 280 (283)
+++++++++...++.|.+++..-+..=. |++-..+ .++++++|.+++.-.++ |||.
T Consensus 160 ~~~K~~lv~~~sm~lWi~v~i~t~~lPt---slN~~L~---pi~l~IiGav~lalRfylkkk~ 216 (226)
T COG4858 160 GTWKYLLVAVLSMLLWIAVMIATVFLPT---SLNPQLP---PIALTIIGAVILALRFYLKKKK 216 (226)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCC---cCCcCCc---hHHHHHHHHHHHHHHHHHHHhh
Confidence 2356777777888889888844332222 2332223 25677777777766655 4443
No 36
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=40.51 E-value=39 Score=33.56 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 023383 129 MSLLAGALFGVIRGLILVVFNATAG 153 (283)
Q Consensus 129 L~l~aG~lfG~~~G~~l~~ig~~lG 153 (283)
.+.++|++|||++|.+...++-.+|
T Consensus 101 pi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 101 LVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3678999999999999999988888
No 37
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=39.78 E-value=2.8e+02 Score=25.64 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=8.4
Q ss_pred HHHHHhHhhCCchHHHH
Q 023383 94 DNLATYAQDYPVPFIIG 110 (283)
Q Consensus 94 ~~l~~~~~~~~~~~~l~ 110 (283)
+++.+|..+++++.+++
T Consensus 212 ~~l~~~~g~~~~~~ill 228 (307)
T PF03773_consen 212 EWLSTLLGSNGLLAILL 228 (307)
T ss_pred HHHHHHhhcCchHHHHH
Confidence 44555444455544433
No 38
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=39.77 E-value=37 Score=35.14 Aligned_cols=42 Identities=24% Similarity=0.619 Sum_probs=26.4
Q ss_pred CchHHHHHHHhhhhhce----eecChHHHH-HHHHHHHHHHHHHHHH
Q 023383 104 PVPFIIGYCSTYIFMQT----FMIPGTIFM-SLLAGALFGVIRGLIL 145 (283)
Q Consensus 104 ~~~~~l~f~~l~i~~~~----~~iPg~~~L-~l~aG~lfG~~~G~~l 145 (283)
....+.+|.++|.+... +.+|..+|+ +++.|..||-..|.++
T Consensus 448 ~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l 494 (762)
T KOG0474|consen 448 GILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLL 494 (762)
T ss_pred chhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHH
Confidence 44556667666655443 256766543 5677888887777554
No 39
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=39.04 E-value=3.6e+02 Score=25.88 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=25.0
Q ss_pred eecChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcHH
Q 023383 121 FMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRP 167 (283)
Q Consensus 121 ~~iPg~~~L~l~aG~lfG~~~G~~l~~ig~~lGa~i~y~lgR~lg~~ 167 (283)
+.+||..++......++|. .-..++...+.+-.|++.|-+|=+
T Consensus 163 lGvPG~~lLiy~i~~l~~~----~~~a~~~i~~~iG~yll~kGfgld 205 (344)
T PF04123_consen 163 LGVPGLILLIYAILALLGY----PAYALGIILLLIGLYLLYKGFGLD 205 (344)
T ss_pred ecchHHHHHHHHHHHHHcc----hHHHHHHHHHHHHHHHHHHhcCcH
Confidence 3489776543333444554 222344455556678899988843
No 40
>COG4732 Predicted membrane protein [Function unknown]
Probab=38.78 E-value=45 Score=28.34 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=23.5
Q ss_pred ecChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023383 122 MIPGTIFMSLLAGALFGVIRGLILVVFNA 150 (283)
Q Consensus 122 ~iPg~~~L~l~aG~lfG~~~G~~l~~ig~ 150 (283)
..|.+-+.++++|...|||++...+.+.+
T Consensus 36 aaP~qh~VNvlAgV~~GPwyala~A~~~s 64 (177)
T COG4732 36 AAPMQHFVNVLAGVMMGPWYALAMALVTS 64 (177)
T ss_pred cCcHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 45777678999999999999987776644
No 41
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=38.78 E-value=1.8e+02 Score=26.17 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=36.0
Q ss_pred HhHHHHHHHHHHhHhhCCchHHHHHHHhhhhhceeecChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHhc
Q 023383 87 ADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCF-FLSKLIG 165 (283)
Q Consensus 87 ~~l~~l~~~l~~~~~~~~~~~~l~f~~l~i~~~~~~iPg~~~L~l~aG~lfG~~~G~~l~~ig~~lGa~i~y-~lgR~lg 165 (283)
...+++.+..+--..+++...++.. .++..|..+ .++.|+++|.|+- ...+|..+|.+++. .++|+.-
T Consensus 8 ~~~~Qi~q~y~~trk~dp~l~~~ml-------~a~l~~~~v--~v~ig~l~~~~~~--~~i~gi~~g~l~am~vl~rra~ 76 (224)
T PF13829_consen 8 GRRKQIWQAYKMTRKEDPKLPWLML-------GAFLGPIAV--FVLIGLLFGSWWY--WLIIGILLGLLAAMIVLSRRAQ 76 (224)
T ss_pred hHHHHHHHHHHHHHHHCcchHHHHH-------HHHHHHHHH--HHHHHHHHccHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666655566665433322 123345443 4677888885432 33445555555443 5677654
Q ss_pred H
Q 023383 166 R 166 (283)
Q Consensus 166 ~ 166 (283)
+
T Consensus 77 r 77 (224)
T PF13829_consen 77 R 77 (224)
T ss_pred H
Confidence 3
No 42
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=38.76 E-value=2.4e+02 Score=23.69 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=35.9
Q ss_pred HHHHhhhccccchhH-HHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHHHhcccc
Q 023383 194 YMLFLRITPSLPNLF-INLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQ 249 (283)
Q Consensus 194 ~vll~Rl~P~~P~~l-in~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~~l~~~~ 249 (283)
.+.+.+.+|. |... +....|...-.+.-=+.+++--.+|..++...++....+.+
T Consensus 46 ~~al~q~~PG-P~~~n~a~~iG~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~~~~~~ 101 (169)
T PF02417_consen 46 GLALAQALPG-PIAINLATFIGYRLAGFLGAIVATIGFILPSFLLILLLSPLYSRFR 101 (169)
T ss_pred HHHHHHcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5778899996 7655 44455555444555556665557888887777777666653
No 43
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=37.78 E-value=22 Score=38.55 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=23.0
Q ss_pred cchhHHHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHHHhcc
Q 023383 204 LPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGD 247 (283)
Q Consensus 204 ~P~~lin~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~~l~~ 247 (283)
+|..+.++..|...+.+..+-+-..++++-.++++++..-.+.+
T Consensus 1017 lPWlI~~li~g~~pV~V~S~GL~~sI~LLF~~LlflissI~l~k 1060 (1096)
T TIGR00927 1017 VPWLLFSLINGLQPVPVSSNGLFCAIVLLFLMLLFVISSIASCK 1060 (1096)
T ss_pred HHHHHHHHhccCcceeecCccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56555555556555555554444444555555555555443333
No 44
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=35.31 E-value=63 Score=27.42 Aligned_cols=48 Identities=21% Similarity=0.138 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhhhHHHHHH
Q 023383 130 SLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFF 180 (283)
Q Consensus 130 ~l~aG~lfG~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~~~~~~~~~~ 180 (283)
+++.|-+|++.+|.++..+-+++ ++.+++.+++. +.+.+.+.+|-+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~i~Fl--il~~lL~~~l~-kpi~~~l~~R~~~I 54 (175)
T PRK14472 7 ILLSGGLLSPNPGLIFWTAVTFV--IVLLILKKIAW-GPILSALEEREKGI 54 (175)
T ss_pred hhhcCCccCCCHHHHHHHHHHHH--HHHHHHHHHhH-HHHHHHHHHHHHHH
Confidence 45666678887666543333332 33344444444 44555554443333
No 45
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=34.91 E-value=1.7e+02 Score=25.50 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=26.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH-HHHHhhhh
Q 023383 221 HIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILP-TLLKRKRI 281 (283)
Q Consensus 221 ~~F~lat~iG~~P~~~i~~~~G~~l~~~~s~~~~~s~~~~~~l~~l~~~~llp-~~~~r~~~ 281 (283)
+++++...+..+.|.++++...- +-.. .+-..++.. ..++|++.+.. .++|||.+
T Consensus 147 ~k~~~~~~~~~~~w~~~~~~~~~-lp~~--inp~l~~~~---~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 147 WKYILISVLAMVLWIVIFVLTSF-LPPV--INPVLPPWV---YIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cccc--CCcCCCHHH---HHHHHHHHHHHHHHHHHHhC
Confidence 34444455666677666665544 3332 222233332 33444444444 44566543
No 46
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=33.74 E-value=73 Score=23.40 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 023383 133 AGALFGVIRGLILVVFNATAGASS 156 (283)
Q Consensus 133 aG~lfG~~~G~~l~~ig~~lGa~i 156 (283)
.|.+||.+.|.+++.+-..+++.+
T Consensus 50 IGILYGlVIGlil~~i~~~l~~~~ 73 (75)
T COG4064 50 IGILYGLVIGLILCMIYILLGVAF 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999998888877777653
No 47
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=33.53 E-value=2.5e+02 Score=22.45 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 023383 177 LRFFQAEIAK 186 (283)
Q Consensus 177 ~~~~~~~l~k 186 (283)
.++++.+.++
T Consensus 83 ~r~l~~~~~~ 92 (111)
T TIGR03750 83 YRKLEWKLAR 92 (111)
T ss_pred HHHHHHHHHH
Confidence 3445544444
No 48
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=33.23 E-value=2.6e+02 Score=22.58 Aligned_cols=10 Identities=40% Similarity=0.521 Sum_probs=5.1
Q ss_pred HHHHHHHHHh
Q 023383 178 RFFQAEIAKR 187 (283)
Q Consensus 178 ~~~~~~l~k~ 187 (283)
++++.+++++
T Consensus 87 r~l~~~l~~~ 96 (121)
T PF11990_consen 87 RRLQWRLARR 96 (121)
T ss_pred HHHHHHHHHh
Confidence 3455555554
No 49
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=33.19 E-value=2.7e+02 Score=25.01 Aligned_cols=15 Identities=20% Similarity=0.085 Sum_probs=7.9
Q ss_pred HHHHHHHHHhcHHHH
Q 023383 155 SSCFFLSKLIGRPLV 169 (283)
Q Consensus 155 ~i~y~lgR~lg~~~v 169 (283)
+++|+.+|.-+.+..
T Consensus 195 ~lG~~~a~~s~~~~~ 209 (234)
T cd02433 195 ATGAVTGLLSGRSPG 209 (234)
T ss_pred HHHHHHHhhCCCcHH
Confidence 355566665554443
No 50
>PHA02692 hypothetical protein; Provisional
Probab=33.09 E-value=1.1e+02 Score=22.53 Aligned_cols=19 Identities=0% Similarity=-0.328 Sum_probs=8.2
Q ss_pred CCCCchhHHHHHHHHHHHH
Q 023383 42 ERFPLTHWEFAAFVGVFLL 60 (283)
Q Consensus 42 ~~~~l~~w~~~~~~~~~~~ 60 (283)
++.+.++|..++...++++
T Consensus 39 ~~~~~~~~~~ii~~~~~~~ 57 (70)
T PHA02692 39 RSKGVPWTTVFLIGLIAAA 57 (70)
T ss_pred ccCCcchHHHHHHHHHHHH
Confidence 3445544444444234333
No 51
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=32.91 E-value=3.4e+02 Score=23.80 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=40.1
Q ss_pred hHHHHhhhccccchhHHHH--hhhccCCChHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Q 023383 193 NYMLFLRITPSLPNLFINL--ASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLQS 250 (283)
Q Consensus 193 ~~vll~Rl~P~~P~~lin~--~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~~l~~~~s 250 (283)
..+.++.++|. |. .+|+ .-|.-.-.+.--+++.+...+|..++...+...+.+..+
T Consensus 50 ~~laisq~lPG-P~-a~~la~~vGy~~~G~~Ga~ia~lafvLPs~i~~~~l~~~~~~~~~ 107 (195)
T COG2059 50 DALAISQLLPG-PI-ATQLAIYVGYKLAGILGALIAGLAFVLPSILIMLGLALLLKRFGD 107 (195)
T ss_pred HHHHHHhcCCC-HH-HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 36788999996 64 3333 345555566677788888889999998888877776643
No 52
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.79 E-value=84 Score=25.55 Aligned_cols=25 Identities=28% Similarity=0.660 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 023383 133 AGALFGVIRGLILVVFNATAGASSCFFLSKL 163 (283)
Q Consensus 133 aG~lfG~~~G~~l~~ig~~lGa~i~y~lgR~ 163 (283)
+|++||...|++... .++.|++.|.
T Consensus 67 ~~Ii~gv~aGvIg~I------lli~y~irR~ 91 (122)
T PF01102_consen 67 IGIIFGVMAGVIGII------LLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred eehhHHHHHHHHHHH------HHHHHHHHHH
Confidence 345555555543322 2677777664
No 53
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=32.53 E-value=4.9e+02 Score=25.52 Aligned_cols=35 Identities=6% Similarity=-0.068 Sum_probs=25.8
Q ss_pred HHHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHH
Q 023383 208 FINLASPIVDIPFHIFFLATLIGLIPASYITVRAG 242 (283)
Q Consensus 208 lin~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G 242 (283)
+.-|+.+..+....+|..++.+|.+-..+.+++..
T Consensus 146 ~~i~~~~~lRa~~p~~~~~~I~~~I~~~i~~t~g~ 180 (459)
T PF10337_consen 146 VFIYFHGWLRAKNPKLNFPVIFGSIFVDIFLTYGP 180 (459)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHhCc
Confidence 44577888888888888888888877766665533
No 54
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=31.44 E-value=27 Score=31.32 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHhHHHHHHHHHHHHHHhcccc
Q 023383 219 PFHIFFLATLIGLIPASYITVRAGLALGDLQ 249 (283)
Q Consensus 219 ~~~~F~lat~iG~~P~~~i~~~~G~~l~~~~ 249 (283)
..+.+.+.|++- +|.+++...+|-...++.
T Consensus 233 ~m~~LT~~t~if-lPlt~i~g~fGMN~~~~p 262 (292)
T PF01544_consen 233 VMKVLTIVTAIF-LPLTFITGIFGMNFKGMP 262 (292)
T ss_dssp HHHHHHHHHHHH-HHHHHHTTSTTS-SS---
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhhCCccCCC
Confidence 345566667666 899999888888777654
No 55
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=30.99 E-value=89 Score=20.36 Aligned_cols=21 Identities=33% Similarity=0.782 Sum_probs=12.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH
Q 023383 43 RFPLTHWEFAAFVGVFLLFVTGL 65 (283)
Q Consensus 43 ~~~l~~w~~~~~~~~~~~~~~~L 65 (283)
|-|+ |.+....++.++.++++
T Consensus 7 RIPL--WlVgtv~G~~vi~lvgl 27 (40)
T PF01788_consen 7 RIPL--WLVGTVAGIAVIGLVGL 27 (40)
T ss_dssp SS-H--HHHHHHHHHHHHHHHHH
T ss_pred cccc--hHHHHHHHHHHHHHHHH
Confidence 6677 87766666665555543
No 56
>PHA02819 hypothetical protein; Provisional
Probab=29.76 E-value=1.3e+02 Score=22.10 Aligned_cols=8 Identities=25% Similarity=0.306 Sum_probs=4.7
Q ss_pred CCCCcccc
Q 023383 30 GDESPTAK 37 (283)
Q Consensus 30 ~~~~~~~~ 37 (283)
+||+|++|
T Consensus 32 td~s~~~~ 39 (71)
T PHA02819 32 NNENYNKK 39 (71)
T ss_pred cCCCCccc
Confidence 45666663
No 57
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=29.27 E-value=3.2e+02 Score=23.84 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=43.5
Q ss_pred HhHHHHHHHHHHhHhhCCchHHHHHHHhhhhhceeecChH-HHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 023383 87 ADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGT-IFMSLLAGAL-FGVIRGLILVVFNATAGASSCFFLSKLI 164 (283)
Q Consensus 87 ~~l~~l~~~l~~~~~~~~~~~~l~f~~l~i~~~~~~iPg~-~~L~l~aG~l-fG~~~G~~l~~ig~~lGa~i~y~lgR~l 164 (283)
+++++-++++++| +... +|+ .=++|+. .++.+.+|.. .....=.+++.+|+.+=+.+..++|..+
T Consensus 98 ~~l~~a~~~f~r~----G~~~--vf~-------~RFip~vRt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~ 164 (208)
T COG0586 98 KKLDKAELLFERH----GLFA--IFL-------GRFIPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLL 164 (208)
T ss_pred HHHHHHHHHHHHc----Cchh--hhh-------hcccchhHhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666654 4321 222 2245543 2346777776 4445556788999999999999999988
Q ss_pred cHHH
Q 023383 165 GRPL 168 (283)
Q Consensus 165 g~~~ 168 (283)
|+..
T Consensus 165 G~~~ 168 (208)
T COG0586 165 GEVI 168 (208)
T ss_pred ccch
Confidence 8553
No 58
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=29.03 E-value=3.8e+02 Score=23.20 Aligned_cols=16 Identities=6% Similarity=0.059 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHhcc
Q 023383 174 PEKLRFFQAEIAKRRE 189 (283)
Q Consensus 174 ~~~~~~~~~~l~k~~~ 189 (283)
.+.++++++|+++|++
T Consensus 179 ~~~l~r~~~wl~~~~~ 194 (214)
T PF11139_consen 179 EPWLERLRSWLRRHSR 194 (214)
T ss_pred HHHHHHHHHHHHHccH
Confidence 3457788899998854
No 59
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=28.99 E-value=3.9e+02 Score=25.10 Aligned_cols=55 Identities=20% Similarity=0.163 Sum_probs=29.4
Q ss_pred HHHHHHHHHhHhhCCchHHHHHHHhhhhhceeecChHHHHHHHHHHH-----HHHHHHHH
Q 023383 90 RLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGAL-----FGVIRGLI 144 (283)
Q Consensus 90 ~~l~~~l~~~~~~~~~~~~l~f~~l~i~~~~~~iPg~~~L~l~aG~l-----fG~~~G~~ 144 (283)
++..+.+.+|....-....+..+..++....+.+|...++.+.+|.+ +|+..|.+
T Consensus 187 ~~~~~~~~~Y~~g~~i~~~i~gv~~~i~l~ilgv~~alllgil~glln~IPyiG~~i~~i 246 (344)
T PRK12287 187 QRALDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAI 246 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhcchhHHHHHH
Confidence 33334455555433233344444545555556778777667777765 45555543
No 60
>PF12089 DUF3566: Transmembrane domain of unknown function (DUF3566); InterPro: IPR021949 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 136 to 304 amino acids in length. This region represents a transmembrane region found at the C terminus of the proteins.
Probab=27.55 E-value=3.3e+02 Score=22.03 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcccccccccccCCCHHhHHHHHHHHHHhHhhC
Q 023383 48 HWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDY 103 (283)
Q Consensus 48 ~w~~~~~~~~~~~~~~~L~~~~~~~P~~~~~~l~~p~~l~~l~~l~~~l~~~~~~~ 103 (283)
|-.+.+.++.+++.+++...+|..+.... -.+++.+.+.+...+.
T Consensus 18 K~sfllSva~~iv~vVAv~vlw~vL~~~G-----------Vf~~in~~~~~~~~~~ 62 (119)
T PF12089_consen 18 KVSFLLSVALFIVWVVAVAVLWLVLDAMG-----------VFDSINSLVGDLGGSD 62 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------hHHHHHHHHHHhccCC
Confidence 44567777778888888888888775432 2455556666555544
No 61
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=27.30 E-value=5.4e+02 Score=24.34 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhcHH
Q 023383 136 LFGVIRGLILVVFNATAGASSCFFLSKLIGRP 167 (283)
Q Consensus 136 lfG~~~G~~l~~ig~~lGa~i~y~lgR~lg~~ 167 (283)
.+-.|.|+.+.++-++..-.+.+.+|+..-++
T Consensus 194 v~rSW~gi~~~T~iS~~Si~~y~vlg~~I~~k 225 (310)
T PF10319_consen 194 VFRSWIGIIILTIISSYSIILYFVLGYKIMKK 225 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46679999888888888777777888876543
No 62
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=27.24 E-value=1.4e+02 Score=23.95 Aligned_cols=87 Identities=20% Similarity=0.143 Sum_probs=0.0
Q ss_pred ccccCCCCcccchhhh--hccCCCCCCCCCcccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHcccccccccccC
Q 023383 6 NVAAGDGSRVFRDEEE--SVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLP 83 (283)
Q Consensus 6 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~L~~~~~~~P~~~~~~l~~p 83 (283)
|+. .+||+. ....+.+.+..++..++....+.+-.-|+.++....+.++-..+.......
T Consensus 3 ~l~-------~~d~d~~~~~~~s~~~~~~~~~~~~~~c~P~~k~pwK~I~la~~Lli~G~~li~~g~l~----------- 64 (115)
T PF05915_consen 3 NLS-------NEDEDDNNDIDDSDSFENSSPQFNRSPCHPKVKIPWKSIALAVFLLIFGTVLIIIGLLL----------- 64 (115)
T ss_pred CCC-------CCCcccCCCCCcchhcccCccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q ss_pred CCHHhHHHHHHHHHHhHhhCCchHHHHHHHhhhhhceeecChH
Q 023383 84 RTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGT 126 (283)
Q Consensus 84 ~~l~~l~~l~~~l~~~~~~~~~~~~l~f~~l~i~~~~~~iPg~ 126 (283)
..+..+...-.+..++++ ....++||.
T Consensus 65 ------------~~~~i~~~~~~~~~llil----G~L~fIPG~ 91 (115)
T PF05915_consen 65 ------------FFGHIDGDRDRGWALLIL----GILCFIPGF 91 (115)
T ss_pred ------------HhcccCCCCcccchHHHH----HHHHHhccH
No 63
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=27.22 E-value=1.5e+02 Score=21.36 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=20.1
Q ss_pred HHHHHHhHHHHHHHHHHhcHHHHhhh
Q 023383 147 VFNATAGASSCFFLSKLIGRPLVSWF 172 (283)
Q Consensus 147 ~ig~~lGa~i~y~lgR~lg~~~v~~~ 172 (283)
.+|+.+|+.++++++-.-|++..++.
T Consensus 6 l~Ga~~Ga~~glL~aP~sG~e~R~~l 31 (74)
T PF12732_consen 6 LAGAAAGAAAGLLFAPKSGKETREKL 31 (74)
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 56788889999998888887765543
No 64
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=26.85 E-value=3.4e+02 Score=29.82 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=9.2
Q ss_pred HHHHHhHHHHHH
Q 023383 225 LATLIGLIPASY 236 (283)
Q Consensus 225 lat~iG~~P~~~ 236 (283)
++|.+|++|..+
T Consensus 978 ltti~gllPla~ 989 (1044)
T TIGR00915 978 LAFILGVVPLAI 989 (1044)
T ss_pred HHHHHHHHHHHH
Confidence 457888999876
No 65
>COG1300 SpoIIM Uncharacterized membrane protein [Function unknown]
Probab=26.80 E-value=4.4e+02 Score=23.22 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 023383 125 GTIFMSLLAGALFGVIRGLILVVFNATAGASSCFF 159 (283)
Q Consensus 125 g~~~L~l~aG~lfG~~~G~~l~~ig~~lGa~i~y~ 159 (283)
...++..++|..+|.+.-.++..-|..+|+.+.+.
T Consensus 82 ~vall~~~g~~~lGl~~il~l~fNG~ivG~~~~~~ 116 (207)
T COG1300 82 KVALLAIAGGLTLGLPTILVLLFNGFIVGFFVGLV 116 (207)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH
Confidence 33446778888888877777777788888887766
No 66
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=26.22 E-value=4.9e+02 Score=24.33 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH-HHhcHH
Q 023383 140 IRGLILVVFNATAGASSCFFLS-KLIGRP 167 (283)
Q Consensus 140 ~~G~~l~~ig~~lGa~i~y~lg-R~lg~~ 167 (283)
+.+.+..++.......++|+++ |.++-|
T Consensus 83 ~~~~~~~~~~v~~~~~~~~~lg~r~~~l~ 111 (305)
T PF03601_consen 83 WKGLLIIIIVVILTFLLTYWLGRRLFGLD 111 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3566667777777778889999 777654
No 67
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=25.29 E-value=4.4e+02 Score=23.39 Aligned_cols=13 Identities=31% Similarity=0.125 Sum_probs=6.9
Q ss_pred HHHHHHHHhcHHH
Q 023383 156 SCFFLSKLIGRPL 168 (283)
Q Consensus 156 i~y~lgR~lg~~~ 168 (283)
++|+.++.-+++.
T Consensus 187 ~G~~~~~~~~~~~ 199 (225)
T cd02434 187 LGSFKSKLYNGKW 199 (225)
T ss_pred HHHHHHHhcCCch
Confidence 5555565555443
No 68
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=24.32 E-value=4.8e+02 Score=22.78 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=20.6
Q ss_pred HHHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHHHhcc
Q 023383 208 FINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGD 247 (283)
Q Consensus 208 lin~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~~l~~ 247 (283)
.+.+.+|+++++.....+.. ...++++++.|..+++
T Consensus 144 avG~s~~~~g~~~~~~~~~i----givs~i~~~~G~~lG~ 179 (206)
T TIGR02840 144 GAGIGASLLGLNPLATSILV----AVMSFIFVSLGLFLGK 179 (206)
T ss_pred HHHHHHHHhCccHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 44566777788755444333 3445666666655554
No 69
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=24.27 E-value=3.6e+02 Score=22.74 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhHhhCCchHHHHHHHhhhhh------ceeecChHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHH
Q 023383 89 LRLLKDNLATYAQDYPVPFIIGYCSTYIFM------QTFMIPGTIFMSLLAGALFGVIRGLILVVFNA-----TAGASSC 157 (283)
Q Consensus 89 l~~l~~~l~~~~~~~~~~~~l~f~~l~i~~------~~~~iPg~~~L~l~aG~lfG~~~G~~l~~ig~-----~lGa~i~ 157 (283)
.|+..+.+...-- .|+++...-++.-++. +.+.+||+.+=.+++|++|-...-...+++|- .+|+.++
T Consensus 30 ~QH~iNviaaVlL-GP~ya~~~Af~~sliR~~lg~Gt~lAfPGsm~GA~laGllyr~~~k~~~a~lGEviGTGiIGal~s 108 (150)
T PF09512_consen 30 MQHMINVIAAVLL-GPWYAVAMAFITSLIRNLLGTGTLLAFPGSMFGALLAGLLYRKTKKLWAAALGEVIGTGIIGALLS 108 (150)
T ss_pred HHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHhCCCCHHHhccchHHHHHHHHHHHHhCcchHHHHHHHHhhHHHHHHHH
Confidence 4666666655432 4555433333333332 23467888754667788876544334444443 5667777
Q ss_pred HHHHHHh
Q 023383 158 FFLSKLI 164 (283)
Q Consensus 158 y~lgR~l 164 (283)
|-+.+++
T Consensus 109 ypva~~~ 115 (150)
T PF09512_consen 109 YPVAKLF 115 (150)
T ss_pred HHHHHHH
Confidence 7766654
No 70
>PRK11281 hypothetical protein; Provisional
Probab=23.87 E-value=1.1e+03 Score=26.57 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHHHHHH-HHHHHHHhccc
Q 023383 221 HIFFLATLIGLIPASYI-TVRAGLALGDL 248 (283)
Q Consensus 221 ~~F~lat~iG~~P~~~i-~~~~G~~l~~~ 248 (283)
.++++.+++-..|..++ .+..|+.....
T Consensus 684 ~~~~~~~~l~~~P~~l~~l~~~GY~yTa~ 712 (1113)
T PRK11281 684 LRLVVRTVLTIAPIALIVLVVLGYYYTAL 712 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666554 66777766553
No 71
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=23.83 E-value=2.3e+02 Score=26.75 Aligned_cols=59 Identities=15% Similarity=0.317 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHhHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 023383 218 IPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRK 279 (283)
Q Consensus 218 i~~~~F~lat~iG~~P~~~i~~~~G~~l~~~~s~~~~~s~~~~~~l~~l~~~~llp~~~~r~ 279 (283)
--.+.+.+.|.+ .+|.+++....|-....+...+ +.+.....+.+.+++++++.++=||
T Consensus 254 ~~mk~lTv~s~i-f~pptliagiyGMNf~~mP~~~--~~~g~~~~l~~~~~~~~~~~~~f~r 312 (316)
T PRK11085 254 RIIKIFSVVSVV-FLPPTLVASSYGMNFEFMPELK--WSFGYPGAIILMILAGLAPYLYFKR 312 (316)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhhcccccCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666655 4577888888888776653222 2333344555555566666555333
No 72
>COG2261 Predicted membrane protein [Function unknown]
Probab=23.67 E-value=2.1e+02 Score=21.71 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=24.6
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHh
Q 023383 131 LLAGALFGVI-----RGLILVVFNATAGASSCFFLSKLI 164 (283)
Q Consensus 131 l~aG~lfG~~-----~G~~l~~ig~~lGa~i~y~lgR~l 164 (283)
.+++.+++.| .+-..+.+.+++||++.-++.|.+
T Consensus 41 ~vg~~l~~~~g~~~~~~~~~~~i~avIGAvIll~i~~~v 79 (82)
T COG2261 41 FVGGWLLGALGFGGPGGNIASFIVAVIGAVILLAIVRLV 79 (82)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666665 345677888999999888887765
No 73
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=23.04 E-value=77 Score=23.84 Aligned_cols=25 Identities=20% Similarity=0.586 Sum_probs=13.2
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHH
Q 023383 40 KSERFPLTHWEFAAFVGVFLLFVTG 64 (283)
Q Consensus 40 ~~~~~~l~~w~~~~~~~~~~~~~~~ 64 (283)
|..+....+|...+.++..+..++.
T Consensus 62 ~~~~~~~~~~~~~~ll~~~ll~l~~ 86 (92)
T PF13038_consen 62 KKEKYRVSRWTYPLLLIGLLLILLS 86 (92)
T ss_pred HHhhhHhHHHHHHHHHHHHHHHHHH
Confidence 3345666677765555554443333
No 74
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=23.01 E-value=6.6e+02 Score=24.09 Aligned_cols=54 Identities=15% Similarity=0.071 Sum_probs=35.4
Q ss_pred HHHHhhhccccchhH-HHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHHHhccc
Q 023383 194 YMLFLRITPSLPNLF-INLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDL 248 (283)
Q Consensus 194 ~vll~Rl~P~~P~~l-in~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~~l~~~ 248 (283)
.+.+++.+|. |... ++...|...=.+.-=+.+++--.+|..++...++....+.
T Consensus 38 ~~alaq~~PG-P~~~n~a~~iG~~~~G~~Gal~a~~~~~lP~~ili~~l~~~~~~~ 92 (368)
T TIGR00937 38 LVALAQFLPG-PASSQVAIYLGYLLGGIVGAILAGLAFTLPSFLLVVALAWAYVHY 92 (368)
T ss_pred HHHHHHcCCC-HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778899997 7644 3434555544555566666666788877777777666554
No 75
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=22.94 E-value=2.9e+02 Score=22.58 Aligned_cols=37 Identities=8% Similarity=0.140 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhhh
Q 023383 138 GVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWP 174 (283)
Q Consensus 138 G~~~G~~l~~ig~~lGa~i~y~lgR~lg~~~v~~~~~ 174 (283)
|...|+.++.+++.+.++..|..-++...+..++...
T Consensus 66 a~~~g~~~~~ia~li~~v~~~i~~~~IdP~~~~~~~~ 102 (163)
T PF13858_consen 66 AFKVGFLISLIAGLISAVFQYIYFNYIDPDFFENYIE 102 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 3567888999999999999999999999888877654
No 76
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=22.75 E-value=8.1e+02 Score=26.95 Aligned_cols=13 Identities=23% Similarity=0.605 Sum_probs=9.6
Q ss_pred HHHHHhHHHHHHH
Q 023383 225 LATLIGLIPASYI 237 (283)
Q Consensus 225 lat~iG~~P~~~i 237 (283)
++|.+|.+|..+.
T Consensus 986 ltti~g~lPl~~~ 998 (1051)
T TIGR00914 986 LVASLGFVPMAIA 998 (1051)
T ss_pred HHHHHHHHHHHhc
Confidence 4578889997763
No 77
>KOG1109 consensus Vacuole membrane protein VMP1 [General function prediction only]
Probab=22.57 E-value=56 Score=31.83 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=55.8
Q ss_pred HHHHHhHHHHHHHHHHh---cH---H-HHhh----------hhhHHHHHHHHHHHHhcc-chHhHHHHhhhccccchhHH
Q 023383 148 FNATAGASSCFFLSKLI---GR---P-LVSW----------FWPEKLRFFQAEIAKRRE-KLLNYMLFLRITPSLPNLFI 209 (283)
Q Consensus 148 ig~~lGa~i~y~lgR~l---g~---~-~v~~----------~~~~~~~~~~~~l~k~~~-~~~~~vll~Rl~P~~P~~li 209 (283)
.|+++|-+..|+++|.- |. + ...- ...++.++.+-+++++-+ -+|..+++.--+|=-=|++.
T Consensus 217 ~gtalgElppyFmaraarlsg~~p~dee~~ef~~g~~~d~e~~~~r~~r~k~wv~~~v~~lgffgIli~aSIpnPlfdla 296 (440)
T KOG1109|consen 217 AGTALGELPPYFMARAARLSGVEPDDEEYTEFEEGLNWDAEIALSRVHRAKSWVENQVQRLGFFGILICASIPNPLFDLA 296 (440)
T ss_pred cccccccCchHHHHHHHHhcCCCCcHHHhhhhhhhhhhhHHHHhhHHHHhHHHHHHHhhhcccceeEEEecCCCcchhhc
Confidence 58899999999999853 10 0 0000 011234455555555422 12445555555552237888
Q ss_pred HHhhhccCCChHHHHHHHHHhHHHH
Q 023383 210 NLASPIVDIPFHIFFLATLIGLIPA 234 (283)
Q Consensus 210 n~~aG~~~i~~~~F~lat~iG~~P~ 234 (283)
...+|...+|||.|+.+|++|....
T Consensus 297 Gitcghflvpfw~ffGaTLigKaii 321 (440)
T KOG1109|consen 297 GITCGHFLVPFWTFFGATLIGKAII 321 (440)
T ss_pred ccccccccchHHHHhhHHHHHHHHH
Confidence 9999999999999999999998654
No 78
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.52 E-value=72 Score=25.75 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 023383 48 HWEFAAFVGVFLLFVT 63 (283)
Q Consensus 48 ~w~~~~~~~~~~~~~~ 63 (283)
||-+++++.+++++++
T Consensus 1 RW~l~~iii~~i~l~~ 16 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFL 16 (130)
T ss_pred CeeeHHHHHHHHHHHH
Confidence 5766665555544443
No 79
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=22.36 E-value=8e+02 Score=24.59 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=22.5
Q ss_pred cccchhHHHHhhhccCCChHHHHHHHHHhHHHHHHHHHHHHHH
Q 023383 202 PSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLA 244 (283)
Q Consensus 202 P~~P~~lin~~aG~~~i~~~~F~lat~iG~~P~~~i~~~~G~~ 244 (283)
|.+||.+. .|+ +|+.++.+|....-.+...+|-.
T Consensus 389 pAIPfgv~--------~p~-~~i~a~~iG~avgGa~~~~~gv~ 422 (482)
T PRK11404 389 PAIPYALA--------APL-PMITANTLAGGITGVLVIAFGIK 422 (482)
T ss_pred chhHHHHc--------Cch-HHHHHHHHHHHHHHHHHHHhCCc
Confidence 77776432 333 77777778888777777776643
No 80
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=22.24 E-value=1.6e+02 Score=27.52 Aligned_cols=60 Identities=18% Similarity=0.286 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHhHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023383 218 IPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLLKRKR 280 (283)
Q Consensus 218 i~~~~F~lat~iG~~P~~~i~~~~G~~l~~~~s~~~~~s~~~~~~l~~l~~~~llp~~~~r~~ 280 (283)
--.+.+.+.|.+ .+|.|++....|-....+.-.+. .+....++++.+++++++.++-||+
T Consensus 260 ~imk~LTi~s~i-flPpTlIagiyGMNf~~mPel~~--~~Gy~~~l~~m~~~~~~~~~~frrk 319 (322)
T COG0598 260 EIMKILTIVSTI-FLPPTLITGFYGMNFKGMPELDW--PYGYPIALILMLLLALLLYLYFRRK 319 (322)
T ss_pred HHHHHHHHHHHH-HHhhHHHHcccccCCCCCcCCCC--cccHHHHHHHHHHHHHHHHHHHHhc
Confidence 334556666654 56778998888987776533332 2222345555556666666654444
No 81
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=21.80 E-value=2.1e+02 Score=21.14 Aligned_cols=16 Identities=19% Similarity=0.567 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 023383 48 HWEFAAFVGVFLLFVT 63 (283)
Q Consensus 48 ~w~~~~~~~~~~~~~~ 63 (283)
.|..++...+++++++
T Consensus 47 ~~~~~ii~ii~v~ii~ 62 (72)
T PF12575_consen 47 NWIILIISIIFVLIIV 62 (72)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 82
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.72 E-value=2.8e+02 Score=19.15 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 023383 176 KLRFFQAEIA 185 (283)
Q Consensus 176 ~~~~~~~~l~ 185 (283)
+.++.++.++
T Consensus 56 ~l~~le~e~~ 65 (68)
T PF06305_consen 56 ELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 83
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=21.51 E-value=1.4e+02 Score=26.06 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcHHHH
Q 023383 143 LILVVFNATAGASSCFFLSKLIGRPLV 169 (283)
Q Consensus 143 ~~l~~ig~~lGa~i~y~lgR~lg~~~v 169 (283)
+++++++..+|..++|++.+...+..+
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~~~~~~ 29 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKINRKKL 29 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888777665544
No 84
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=21.06 E-value=2.4e+02 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.528 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcHHHHh
Q 023383 143 LILVVFNATAGASSCFFLSKLIGRPLVS 170 (283)
Q Consensus 143 ~~l~~ig~~lGa~i~y~lgR~lg~~~v~ 170 (283)
.++..++...+.+.+|+.||.+|++...
T Consensus 136 ~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~ 163 (265)
T COG0575 136 LLLLFLGVWAGDIGAYFVGRRFGKHKLA 163 (265)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcCCCCCC
Confidence 4456677888999999999999988543
No 85
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=20.82 E-value=3.2e+02 Score=25.00 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHhHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH-Hhh
Q 023383 218 IPFHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTLL-KRK 279 (283)
Q Consensus 218 i~~~~F~lat~iG~~P~~~i~~~~G~~l~~~~s~~~~~s~~~~~~l~~l~~~~llp~~~-~r~ 279 (283)
-..+.+.+.|.+ .+|.+++....|-....+...+. .+.....+++.+++++++.++ |||
T Consensus 256 ~~mk~LTvvt~I-flP~t~IaGiyGMNf~~mP~l~~--~~gy~~~l~~m~~i~~~~~~~fkrk 315 (318)
T TIGR00383 256 EIMKILTVVSTI-FIPLTFIAGIYGMNFKFMPELNW--KYGYPAVLIVMAVIALGPLIYFRRK 315 (318)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCcccCccccc--hhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555555555 45778888888877765543332 233334444444555555544 544
No 86
>PRK09546 zntB zinc transporter; Reviewed
Probab=20.61 E-value=2.7e+02 Score=25.84 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHH-HHHhhh
Q 023383 220 FHIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPT-LLKRKR 280 (283)
Q Consensus 220 ~~~F~lat~iG~~P~~~i~~~~G~~l~~~~s~~~~~s~~~~~~l~~l~~~~llp~-~~~r~~ 280 (283)
.+.+.+.|.+.+ |.+++....|-...++...+.-+++ ...+++.++++++.. ++|||+
T Consensus 264 m~~Ltilt~Ifl-PlT~IaGiyGMNf~~mPel~~~~gy--~~~l~im~~i~~~~~~~fkrk~ 322 (324)
T PRK09546 264 TYTMSLMAMVFL-PTTFLTGLFGVNLGGIPGGGWPFGF--SIFCLLLVVLIGGVAWWLKRSK 322 (324)
T ss_pred HHHHHHHHHHHH-HHHHHHhhhccccCCCCCcCCcchH--HHHHHHHHHHHHHHHHHHHhcc
Confidence 334555555544 8889988889877666433322233 233334444444443 445543
No 87
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.55 E-value=2.9e+02 Score=18.81 Aligned_cols=25 Identities=20% Similarity=0.515 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 023383 135 ALFGVIRGLILVVFNATAGASSCFFLSKLI 164 (283)
Q Consensus 135 ~lfG~~~G~~l~~ig~~lGa~i~y~lgR~l 164 (283)
..||+|.-.++. +.+ .++|.+|+++
T Consensus 25 l~~GF~~tl~i~-~~~----~iG~~iG~~~ 49 (51)
T PF10031_consen 25 LTFGFWKTLFIL-LFA----AIGYYIGKYL 49 (51)
T ss_pred HHHHHHHHHHHH-HHH----HHHHHHHHHh
Confidence 456766544433 333 3446666654
No 88
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=20.39 E-value=3.4e+02 Score=22.09 Aligned_cols=23 Identities=35% Similarity=0.558 Sum_probs=11.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH
Q 023383 43 RFPLTHWEFAAFVGVFLLFVTGL 65 (283)
Q Consensus 43 ~~~l~~w~~~~~~~~~~~~~~~L 65 (283)
+-|..+.-+...+..|.++++++
T Consensus 45 r~P~k~i~lavvL~~fg~Lli~l 67 (124)
T KOG4753|consen 45 RHPVKEIALAVVLLVFGLLLIGL 67 (124)
T ss_pred CCchHHHHHHHHHHHHHHHHHHH
Confidence 56664444444444444444443
No 89
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=20.33 E-value=2.8e+02 Score=18.50 Aligned_cols=22 Identities=27% Similarity=0.239 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHh
Q 023383 143 LILVVFNATAGASSCFFLSKLI 164 (283)
Q Consensus 143 ~~l~~ig~~lGa~i~y~lgR~l 164 (283)
..-.++.+++||++.-++.|.+
T Consensus 25 ~~~~~i~aviGAiill~i~~~i 46 (48)
T PF04226_consen 25 SWGSFIVAVIGAIILLFIYRLI 46 (48)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777766665543
Done!