Query 023384
Match_columns 283
No_of_seqs 231 out of 2311
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:38:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 100.0 9.3E-46 2E-50 310.6 19.3 235 19-260 3-241 (241)
2 KOG3178 Hydroxyindole-O-methyl 100.0 3.5E-40 7.6E-45 278.3 16.9 275 1-283 64-342 (342)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 4.8E-33 1E-37 241.4 18.5 248 1-270 44-305 (306)
4 PF01209 Ubie_methyltran: ubiE 99.8 2.6E-20 5.7E-25 154.4 9.2 161 116-283 45-233 (233)
5 COG2226 UbiE Methylase involve 99.8 5.4E-19 1.2E-23 145.2 16.8 161 117-283 50-237 (238)
6 TIGR00740 methyltransferase, p 99.8 6.4E-20 1.4E-24 153.8 9.4 164 117-283 52-239 (239)
7 PLN02233 ubiquinone biosynthes 99.8 4.2E-18 9.1E-23 144.2 19.6 160 116-282 71-260 (261)
8 PTZ00098 phosphoethanolamine N 99.8 6.4E-18 1.4E-22 143.2 15.6 155 105-273 42-204 (263)
9 TIGR02752 MenG_heptapren 2-hep 99.8 1E-17 2.2E-22 139.7 16.4 161 116-283 43-231 (231)
10 PRK15451 tRNA cmo(5)U34 methyl 99.8 5.5E-19 1.2E-23 148.6 7.6 151 116-270 54-229 (247)
11 PLN02490 MPBQ/MSBQ methyltrans 99.7 9.4E-17 2E-21 139.3 15.0 139 118-273 113-258 (340)
12 PRK14103 trans-aconitate 2-met 99.7 1.8E-16 3.8E-21 134.2 16.1 154 105-268 19-181 (255)
13 PLN02244 tocopherol O-methyltr 99.7 2.2E-16 4.8E-21 138.7 16.8 151 117-273 117-280 (340)
14 PRK00216 ubiE ubiquinone/menaq 99.7 6.9E-16 1.5E-20 129.2 18.9 160 116-283 49-238 (239)
15 KOG1540 Ubiquinone biosynthesi 99.7 1.8E-16 3.9E-21 128.2 14.2 146 117-268 99-278 (296)
16 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 8.8E-16 1.9E-20 127.2 16.3 160 116-283 37-223 (223)
17 PLN02336 phosphoethanolamine N 99.7 5.4E-16 1.2E-20 142.6 15.6 148 107-271 258-414 (475)
18 smart00828 PKS_MT Methyltransf 99.7 5.8E-16 1.3E-20 128.5 13.6 135 120-272 1-145 (224)
19 PRK15068 tRNA mo(5)U34 methylt 99.7 9.1E-16 2E-20 133.5 15.3 144 118-272 122-275 (322)
20 PRK11873 arsM arsenite S-adeno 99.7 1.3E-15 2.7E-20 130.2 15.1 145 116-271 75-230 (272)
21 PF12847 Methyltransf_18: Meth 99.7 6.2E-16 1.3E-20 114.1 10.7 97 119-218 2-111 (112)
22 PF13847 Methyltransf_31: Meth 99.7 2.7E-16 6E-21 122.6 9.2 136 118-263 3-152 (152)
23 TIGR00452 methyltransferase, p 99.7 2E-15 4.4E-20 130.0 15.0 145 117-272 120-274 (314)
24 PRK11207 tellurite resistance 99.7 2.3E-15 5.1E-20 122.3 14.5 140 105-269 20-168 (197)
25 PRK06922 hypothetical protein; 99.7 1.7E-15 3.6E-20 139.4 14.3 145 75-225 376-544 (677)
26 PLN02396 hexaprenyldihydroxybe 99.7 9E-16 1.9E-20 132.8 11.7 147 118-271 131-289 (322)
27 PF13489 Methyltransf_23: Meth 99.7 1.6E-15 3.4E-20 119.1 11.8 135 116-268 20-160 (161)
28 PRK08317 hypothetical protein; 99.6 6.2E-15 1.3E-19 123.3 15.4 149 116-271 17-176 (241)
29 PRK11036 putative S-adenosyl-L 99.6 3.5E-15 7.7E-20 126.2 13.0 151 117-274 43-210 (255)
30 PRK05785 hypothetical protein; 99.6 2.1E-14 4.5E-19 119.0 16.9 155 118-283 51-224 (226)
31 TIGR02021 BchM-ChlM magnesium 99.6 1.2E-14 2.7E-19 120.1 15.6 183 77-273 15-208 (219)
32 PF02353 CMAS: Mycolic acid cy 99.6 7.2E-15 1.6E-19 124.6 12.6 159 105-272 52-218 (273)
33 PRK01683 trans-aconitate 2-met 99.6 3.1E-14 6.7E-19 120.7 15.9 151 105-266 21-182 (258)
34 PRK06202 hypothetical protein; 99.6 3.9E-14 8.5E-19 118.2 14.7 149 117-272 59-223 (232)
35 TIGR00477 tehB tellurite resis 99.6 3.4E-14 7.4E-19 115.2 13.9 133 116-270 28-168 (195)
36 PF06080 DUF938: Protein of un 99.6 5.9E-14 1.3E-18 112.0 14.1 162 116-283 22-204 (204)
37 PF08241 Methyltransf_11: Meth 99.6 9.4E-15 2E-19 104.1 8.6 88 123-216 1-95 (95)
38 COG2230 Cfa Cyclopropane fatty 99.6 3.8E-14 8.2E-19 118.7 12.9 156 104-272 61-224 (283)
39 TIGR02072 BioC biotin biosynth 99.6 8.1E-14 1.8E-18 116.6 14.5 135 119-270 35-175 (240)
40 TIGR03438 probable methyltrans 99.5 2.3E-13 5.1E-18 117.6 15.9 98 116-216 61-175 (301)
41 PF08242 Methyltransf_12: Meth 99.5 2.6E-15 5.7E-20 108.3 3.1 87 123-214 1-99 (99)
42 TIGR03587 Pse_Me-ase pseudamin 99.5 1.4E-13 3.1E-18 112.1 13.3 103 116-223 41-147 (204)
43 PRK07580 Mg-protoporphyrin IX 99.5 3.7E-13 8.1E-18 112.1 15.8 145 117-273 62-216 (230)
44 PRK08287 cobalt-precorrin-6Y C 99.5 2.5E-13 5.4E-18 109.6 14.1 119 116-270 29-155 (187)
45 COG4106 Tam Trans-aconitate me 99.5 6.8E-14 1.5E-18 110.7 10.3 167 105-283 20-203 (257)
46 PRK10258 biotin biosynthesis p 99.5 5.9E-13 1.3E-17 112.4 15.8 148 103-266 30-182 (251)
47 TIGR00537 hemK_rel_arch HemK-r 99.5 6.3E-13 1.4E-17 106.5 15.1 133 118-283 19-177 (179)
48 PRK12335 tellurite resistance 99.5 3.1E-13 6.8E-18 116.2 14.2 131 118-270 120-258 (287)
49 smart00138 MeTrc Methyltransfe 99.5 3.1E-13 6.8E-18 114.5 13.9 98 118-218 99-242 (264)
50 PLN02336 phosphoethanolamine N 99.5 2.9E-13 6.3E-18 124.6 14.3 143 105-268 27-179 (475)
51 PF13649 Methyltransf_25: Meth 99.5 4.1E-14 8.8E-19 102.5 6.5 86 122-207 1-99 (101)
52 PRK04266 fibrillarin; Provisio 99.5 8.9E-13 1.9E-17 108.9 15.2 141 116-283 70-225 (226)
53 PLN03075 nicotianamine synthas 99.5 3.7E-13 8E-18 114.1 12.9 96 118-217 123-232 (296)
54 PRK11705 cyclopropane fatty ac 99.5 1E-12 2.2E-17 117.0 16.0 145 116-272 165-313 (383)
55 PLN02585 magnesium protoporphy 99.5 6.6E-13 1.4E-17 114.6 12.8 153 118-282 144-313 (315)
56 COG2227 UbiG 2-polyprenyl-3-me 99.5 9.4E-14 2E-18 112.5 6.4 145 118-272 59-216 (243)
57 KOG1270 Methyltransferases [Co 99.4 1.2E-13 2.6E-18 112.7 6.1 140 120-270 91-248 (282)
58 PRK00107 gidB 16S rRNA methylt 99.4 8.5E-12 1.8E-16 100.0 16.2 119 116-272 43-170 (187)
59 TIGR03840 TMPT_Se_Te thiopurin 99.4 7.8E-12 1.7E-16 102.5 16.2 130 117-270 33-186 (213)
60 PRK15001 SAM-dependent 23S rib 99.4 4E-12 8.7E-17 112.1 14.9 97 119-218 229-340 (378)
61 TIGR00138 gidB 16S rRNA methyl 99.4 2.1E-12 4.7E-17 103.2 11.9 119 119-275 43-173 (181)
62 KOG2361 Predicted methyltransf 99.4 1.6E-12 3.4E-17 104.8 10.0 144 121-269 74-235 (264)
63 PRK05134 bifunctional 3-demeth 99.4 5.7E-12 1.2E-16 105.2 13.8 147 117-271 47-205 (233)
64 PRK09489 rsmC 16S ribosomal RN 99.4 1.5E-11 3.2E-16 107.7 16.3 98 119-219 197-304 (342)
65 TIGR02081 metW methionine bios 99.4 6.9E-12 1.5E-16 101.7 12.6 147 116-272 11-168 (194)
66 PF05891 Methyltransf_PK: AdoM 99.4 3.6E-12 7.8E-17 102.3 9.3 140 118-274 55-204 (218)
67 PF08003 Methyltransf_9: Prote 99.4 1.1E-11 2.5E-16 104.0 12.5 143 118-272 115-268 (315)
68 PF03848 TehB: Tellurite resis 99.4 8.2E-12 1.8E-16 99.6 11.0 139 106-269 21-167 (192)
69 TIGR01983 UbiG ubiquinone bios 99.3 1.3E-11 2.9E-16 102.3 11.8 145 118-271 45-203 (224)
70 PF05401 NodS: Nodulation prot 99.3 8.6E-12 1.9E-16 98.5 9.6 133 116-273 41-181 (201)
71 PRK13255 thiopurine S-methyltr 99.3 3.8E-11 8.2E-16 98.8 13.9 131 117-271 36-190 (218)
72 COG2813 RsmC 16S RNA G1207 met 99.3 7.5E-11 1.6E-15 99.3 15.8 109 105-219 148-267 (300)
73 PF05175 MTS: Methyltransferas 99.3 1.6E-11 3.4E-16 97.5 11.2 98 118-218 31-140 (170)
74 PTZ00146 fibrillarin; Provisio 99.3 1.2E-10 2.6E-15 98.5 16.5 141 116-282 130-285 (293)
75 TIGR03534 RF_mod_PrmC protein- 99.3 3.1E-11 6.7E-16 101.8 12.9 123 118-272 87-242 (251)
76 PRK00517 prmA ribosomal protei 99.3 9.6E-11 2.1E-15 98.8 15.2 125 116-282 117-249 (250)
77 KOG4300 Predicted methyltransf 99.3 3.7E-11 8.1E-16 94.6 11.6 149 117-274 75-235 (252)
78 TIGR02469 CbiT precorrin-6Y C5 99.3 3.2E-11 6.9E-16 90.3 10.8 94 116-217 17-121 (124)
79 PRK09328 N5-glutamine S-adenos 99.3 1.4E-10 3.1E-15 99.2 15.8 135 117-283 107-275 (275)
80 PRK00121 trmB tRNA (guanine-N( 99.2 2.4E-11 5.2E-16 99.1 8.2 98 118-218 40-156 (202)
81 PRK14968 putative methyltransf 99.2 7.5E-10 1.6E-14 89.1 16.0 124 117-273 22-175 (188)
82 PRK14966 unknown domain/N5-glu 99.2 4.9E-10 1.1E-14 99.2 16.0 134 117-282 250-417 (423)
83 PLN02232 ubiquinone biosynthes 99.2 6.8E-11 1.5E-15 92.8 9.2 129 146-281 1-158 (160)
84 PF12147 Methyltransf_20: Puta 99.2 4.3E-10 9.3E-15 93.7 13.9 155 117-283 134-311 (311)
85 COG2242 CobL Precorrin-6B meth 99.2 6.2E-10 1.4E-14 87.3 13.5 95 116-219 32-136 (187)
86 PRK13256 thiopurine S-methyltr 99.2 8.1E-10 1.8E-14 90.7 14.5 101 117-222 42-167 (226)
87 TIGR00536 hemK_fam HemK family 99.2 1.1E-09 2.4E-14 94.1 16.0 131 120-282 116-281 (284)
88 PF07021 MetW: Methionine bios 99.2 1.1E-10 2.3E-15 92.1 8.9 149 116-274 11-170 (193)
89 TIGR03533 L3_gln_methyl protei 99.2 5E-10 1.1E-14 96.0 13.6 119 118-269 121-272 (284)
90 PRK13944 protein-L-isoaspartat 99.2 3.6E-10 7.9E-15 92.4 11.0 91 116-217 70-172 (205)
91 PHA03411 putative methyltransf 99.2 6.1E-10 1.3E-14 93.3 12.2 123 119-266 65-209 (279)
92 PRK11805 N5-glutamine S-adenos 99.1 7.8E-10 1.7E-14 95.7 13.1 94 120-216 135-261 (307)
93 PRK00377 cbiT cobalt-precorrin 99.1 9.6E-10 2.1E-14 89.4 12.8 93 116-216 38-143 (198)
94 TIGR00091 tRNA (guanine-N(7)-) 99.1 1.6E-10 3.6E-15 93.6 8.1 97 118-218 16-132 (194)
95 PRK13942 protein-L-isoaspartat 99.1 5.9E-10 1.3E-14 91.6 11.0 99 105-217 66-175 (212)
96 PRK11088 rrmA 23S rRNA methylt 99.1 2.5E-10 5.3E-15 97.6 8.5 90 118-219 85-182 (272)
97 PF06325 PrmA: Ribosomal prote 99.1 1.6E-09 3.6E-14 92.5 13.4 128 116-283 159-295 (295)
98 PF05724 TPMT: Thiopurine S-me 99.1 1.5E-09 3.3E-14 89.1 12.5 132 116-271 35-190 (218)
99 TIGR00406 prmA ribosomal prote 99.1 1.5E-09 3.3E-14 93.3 13.0 120 117-274 158-286 (288)
100 COG4123 Predicted O-methyltran 99.1 1.3E-09 2.8E-14 90.0 11.7 136 116-283 42-212 (248)
101 TIGR00080 pimt protein-L-isoas 99.1 9.2E-10 2E-14 90.7 10.8 99 105-217 67-176 (215)
102 PRK04457 spermidine synthase; 99.1 5.7E-10 1.2E-14 94.5 9.7 97 117-217 65-176 (262)
103 PRK01544 bifunctional N5-gluta 99.1 2.4E-09 5.3E-14 98.7 14.4 131 119-281 139-304 (506)
104 PRK14967 putative methyltransf 99.1 5.7E-09 1.2E-13 86.5 14.5 102 116-221 34-162 (223)
105 PRK11188 rrmJ 23S rRNA methylt 99.1 2.4E-09 5.3E-14 87.7 12.0 96 116-218 49-165 (209)
106 PRK14121 tRNA (guanine-N(7)-)- 99.1 2.9E-09 6.3E-14 93.8 12.7 148 117-270 121-285 (390)
107 cd02440 AdoMet_MTases S-adenos 99.1 1.4E-09 3E-14 77.9 9.1 92 121-217 1-103 (107)
108 PRK07402 precorrin-6B methylas 99.1 2.3E-09 5E-14 87.1 11.3 95 116-219 38-143 (196)
109 PF13659 Methyltransf_26: Meth 99.0 7E-10 1.5E-14 82.2 7.0 95 120-218 2-115 (117)
110 KOG1271 Methyltransferases [Ge 99.0 9.6E-10 2.1E-14 85.1 7.7 122 120-273 69-207 (227)
111 KOG2899 Predicted methyltransf 99.0 1.3E-09 2.7E-14 88.2 8.7 151 106-268 47-254 (288)
112 COG2264 PrmA Ribosomal protein 99.0 7.5E-09 1.6E-13 87.8 13.6 133 111-280 155-297 (300)
113 COG2890 HemK Methylase of poly 99.0 1.1E-08 2.4E-13 87.3 14.5 129 121-281 113-274 (280)
114 TIGR03704 PrmC_rel_meth putati 99.0 1.3E-08 2.8E-13 85.8 13.6 120 119-270 87-239 (251)
115 PF05148 Methyltransf_8: Hypot 98.9 6.5E-08 1.4E-12 77.3 14.0 177 54-283 14-197 (219)
116 PRK00312 pcm protein-L-isoaspa 98.9 1.7E-08 3.8E-13 82.9 11.3 90 116-218 76-175 (212)
117 TIGR01177 conserved hypothetic 98.9 1.9E-08 4.1E-13 88.3 12.1 120 116-272 180-316 (329)
118 PRK00811 spermidine synthase; 98.9 8.2E-09 1.8E-13 88.5 9.1 97 117-216 75-189 (283)
119 TIGR00438 rrmJ cell division p 98.9 1.2E-08 2.6E-13 82.3 9.5 95 116-217 30-145 (188)
120 PF04672 Methyltransf_19: S-ad 98.9 2.4E-08 5.3E-13 83.2 10.7 141 118-268 68-233 (267)
121 PRK10611 chemotaxis methyltran 98.8 9.5E-08 2E-12 81.5 12.8 96 119-217 116-261 (287)
122 TIGR03439 methyl_EasF probable 98.8 6.7E-08 1.5E-12 83.6 12.1 104 116-222 74-202 (319)
123 COG2519 GCD14 tRNA(1-methylade 98.8 7.1E-08 1.5E-12 79.2 11.5 103 106-221 85-198 (256)
124 PLN02366 spermidine synthase 98.8 3.1E-08 6.8E-13 85.5 9.8 97 117-216 90-204 (308)
125 PRK01581 speE spermidine synth 98.8 3.5E-08 7.5E-13 85.9 9.2 99 116-217 148-267 (374)
126 TIGR00417 speE spermidine synt 98.8 3.5E-08 7.6E-13 84.2 8.9 98 117-217 71-185 (270)
127 PRK13943 protein-L-isoaspartat 98.8 7E-08 1.5E-12 83.8 10.9 92 116-218 78-180 (322)
128 PLN02781 Probable caffeoyl-CoA 98.8 7E-08 1.5E-12 80.4 10.5 98 116-222 66-181 (234)
129 PRK03612 spermidine synthase; 98.8 1E-07 2.2E-12 88.5 12.4 97 117-217 296-414 (521)
130 PLN02672 methionine S-methyltr 98.8 9.5E-08 2.1E-12 94.0 12.4 121 120-272 120-304 (1082)
131 PF05219 DREV: DREV methyltran 98.7 1.1E-07 2.4E-12 78.5 10.7 143 118-273 94-242 (265)
132 COG1352 CheR Methylase of chem 98.7 2.8E-07 6E-12 77.6 13.0 98 118-218 96-241 (268)
133 PF01739 CheR: CheR methyltran 98.7 2.6E-08 5.6E-13 80.4 6.5 97 118-217 31-174 (196)
134 smart00650 rADc Ribosomal RNA 98.7 8.7E-08 1.9E-12 75.9 9.1 77 106-187 4-88 (169)
135 KOG3010 Methyltransferase [Gen 98.7 4E-08 8.7E-13 79.7 6.9 97 117-220 32-139 (261)
136 PF01596 Methyltransf_3: O-met 98.7 1.1E-07 2.3E-12 77.4 9.5 98 116-222 43-158 (205)
137 PHA03412 putative methyltransf 98.7 1E-07 2.2E-12 78.3 9.3 92 119-214 50-158 (241)
138 KOG3045 Predicted RNA methylas 98.7 1.4E-06 3E-11 71.4 14.7 157 79-282 139-302 (325)
139 PRK10901 16S rRNA methyltransf 98.7 2.4E-07 5.2E-12 84.1 11.6 103 116-221 242-375 (427)
140 PF08704 GCD14: tRNA methyltra 98.7 3.6E-07 7.8E-12 76.2 11.4 102 107-221 32-149 (247)
141 TIGR00563 rsmB ribosomal RNA s 98.7 1.9E-07 4E-12 84.9 10.4 105 116-223 236-373 (426)
142 PF03291 Pox_MCEL: mRNA cappin 98.6 3.5E-07 7.6E-12 79.8 10.8 97 118-218 62-186 (331)
143 PF01135 PCMT: Protein-L-isoas 98.6 1.6E-07 3.5E-12 76.6 7.9 99 106-218 63-172 (209)
144 PRK14902 16S rRNA methyltransf 98.6 4.4E-07 9.4E-12 82.9 11.3 103 116-221 248-382 (444)
145 PRK14904 16S rRNA methyltransf 98.6 4.4E-07 9.5E-12 82.9 11.1 104 116-222 248-381 (445)
146 COG4976 Predicted methyltransf 98.6 7.2E-08 1.6E-12 77.6 5.1 137 116-272 123-266 (287)
147 PF10294 Methyltransf_16: Puta 98.6 2.3E-07 5.1E-12 73.7 8.0 101 116-221 43-159 (173)
148 PF02390 Methyltransf_4: Putat 98.6 3.9E-07 8.5E-12 73.7 9.4 91 120-218 19-133 (195)
149 COG2518 Pcm Protein-L-isoaspar 98.6 7.9E-07 1.7E-11 71.5 10.7 97 107-219 64-170 (209)
150 COG4122 Predicted O-methyltran 98.6 5.1E-07 1.1E-11 73.6 9.5 101 116-225 57-172 (219)
151 PLN02476 O-methyltransferase 98.6 5.9E-07 1.3E-11 76.1 10.1 99 116-223 116-232 (278)
152 PRK13168 rumA 23S rRNA m(5)U19 98.5 8.4E-07 1.8E-11 81.0 11.7 84 116-207 295-392 (443)
153 PRK14901 16S rRNA methyltransf 98.5 7.1E-07 1.5E-11 81.3 10.6 103 116-221 250-387 (434)
154 PRK11727 23S rRNA mA1618 methy 98.5 9.8E-07 2.1E-11 76.4 10.8 144 118-272 114-293 (321)
155 KOG1541 Predicted protein carb 98.5 1.1E-06 2.3E-11 70.5 9.5 95 116-216 46-158 (270)
156 COG4301 Uncharacterized conser 98.5 1.5E-06 3.3E-11 70.7 9.9 156 57-223 25-199 (321)
157 PRK14896 ksgA 16S ribosomal RN 98.5 1.2E-06 2.5E-11 74.3 9.7 79 104-187 18-102 (258)
158 TIGR00446 nop2p NOL1/NOP2/sun 98.5 1.6E-06 3.4E-11 73.8 10.4 104 116-222 69-203 (264)
159 PRK14903 16S rRNA methyltransf 98.5 1.6E-06 3.4E-11 78.8 10.9 104 116-222 235-370 (431)
160 PRK04148 hypothetical protein; 98.4 2.8E-06 6E-11 63.7 10.0 81 118-206 16-102 (134)
161 TIGR00755 ksgA dimethyladenosi 98.4 1.2E-06 2.7E-11 74.0 9.0 90 105-203 19-116 (253)
162 COG3963 Phospholipid N-methylt 98.4 3E-06 6.5E-11 65.0 9.9 114 101-220 34-158 (194)
163 PF08123 DOT1: Histone methyla 98.4 8.4E-07 1.8E-11 72.1 7.2 109 107-224 34-164 (205)
164 PF11968 DUF3321: Putative met 98.4 5.4E-06 1.2E-10 66.8 11.1 121 119-274 52-184 (219)
165 PRK00274 ksgA 16S ribosomal RN 98.4 1.4E-06 3.1E-11 74.3 8.4 74 105-183 32-112 (272)
166 COG0421 SpeE Spermidine syntha 98.4 1.5E-06 3.2E-11 74.0 8.2 97 117-217 75-189 (282)
167 PLN02823 spermine synthase 98.4 1.3E-06 2.9E-11 76.3 8.2 96 117-216 102-218 (336)
168 PLN02589 caffeoyl-CoA O-methyl 98.4 2.1E-06 4.5E-11 71.8 9.0 99 116-223 77-194 (247)
169 PF05185 PRMT5: PRMT5 arginine 98.4 1E-06 2.2E-11 80.0 7.6 122 77-207 151-289 (448)
170 KOG1975 mRNA cap methyltransfe 98.3 1.8E-06 4E-11 73.0 7.9 95 116-214 115-233 (389)
171 PRK10909 rsmD 16S rRNA m(2)G96 98.3 2.1E-06 4.4E-11 69.6 7.1 96 118-221 53-161 (199)
172 PF04816 DUF633: Family of unk 98.3 7.7E-06 1.7E-10 66.5 10.1 124 122-282 1-138 (205)
173 KOG1331 Predicted methyltransf 98.3 1.6E-06 3.5E-11 72.3 6.0 97 116-219 43-144 (293)
174 PRK00536 speE spermidine synth 98.3 5E-06 1.1E-10 69.9 8.7 88 116-216 70-169 (262)
175 PTZ00338 dimethyladenosine tra 98.3 4.8E-06 1E-10 71.6 8.6 88 105-198 26-122 (294)
176 KOG1500 Protein arginine N-met 98.2 5E-06 1.1E-10 70.7 8.3 92 120-215 179-279 (517)
177 PF09243 Rsm22: Mitochondrial 98.2 1.2E-05 2.6E-10 68.6 9.9 101 119-224 34-145 (274)
178 COG2263 Predicted RNA methylas 98.2 8E-06 1.7E-10 64.2 7.7 71 118-189 45-121 (198)
179 COG0220 Predicted S-adenosylme 98.2 2.1E-06 4.6E-11 70.8 4.7 91 120-218 50-164 (227)
180 TIGR00478 tly hemolysin TlyA f 98.2 1.7E-05 3.7E-10 65.6 10.0 127 118-273 75-219 (228)
181 KOG1661 Protein-L-isoaspartate 98.2 8E-06 1.7E-10 65.1 7.4 99 107-217 72-192 (237)
182 PRK11783 rlmL 23S rRNA m(2)G24 98.2 7.6E-06 1.7E-10 78.8 8.9 98 116-217 536-655 (702)
183 PF01564 Spermine_synth: Sperm 98.2 5.7E-06 1.2E-10 69.5 7.0 99 117-218 75-191 (246)
184 PRK03522 rumB 23S rRNA methylu 98.1 1E-05 2.2E-10 70.6 8.1 64 118-183 173-247 (315)
185 PRK15128 23S rRNA m(5)C1962 me 98.1 1.7E-05 3.7E-10 71.1 9.5 99 116-218 218-339 (396)
186 KOG2940 Predicted methyltransf 98.1 1E-05 2.2E-10 65.4 6.7 141 117-269 71-225 (325)
187 TIGR00479 rumA 23S rRNA (uraci 98.1 2E-05 4.2E-10 71.9 9.4 84 116-207 290-388 (431)
188 PF02527 GidB: rRNA small subu 98.0 2.2E-05 4.8E-10 62.7 7.2 89 121-218 51-148 (184)
189 TIGR00095 RNA methyltransferas 98.0 1.7E-05 3.6E-10 63.9 6.6 96 118-221 49-161 (189)
190 KOG0820 Ribosomal RNA adenine 98.0 2.3E-05 5E-10 65.0 7.1 75 104-183 47-130 (315)
191 KOG3191 Predicted N6-DNA-methy 98.0 0.0006 1.3E-08 53.4 14.4 68 119-186 44-120 (209)
192 KOG1499 Protein arginine N-met 98.0 1.9E-05 4E-10 68.0 6.4 93 118-214 60-163 (346)
193 TIGR02085 meth_trns_rumB 23S r 97.9 4.1E-05 8.9E-10 68.4 8.1 64 118-183 233-307 (374)
194 PRK01544 bifunctional N5-gluta 97.9 3.6E-05 7.8E-10 71.3 7.7 97 118-218 347-462 (506)
195 PRK00050 16S rRNA m(4)C1402 me 97.8 4.1E-05 9E-10 65.6 6.5 75 105-182 9-96 (296)
196 KOG2904 Predicted methyltransf 97.8 5.2E-05 1.1E-09 63.0 6.1 65 119-183 149-229 (328)
197 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 8.4E-05 1.8E-09 62.3 7.1 148 118-283 56-256 (256)
198 PF07942 N2227: N2227-like pro 97.8 0.00053 1.1E-08 57.9 11.9 134 118-271 56-242 (270)
199 PF03141 Methyltransf_29: Puta 97.7 1.3E-05 2.9E-10 72.0 2.1 97 118-221 117-222 (506)
200 PF13679 Methyltransf_32: Meth 97.7 0.00011 2.3E-09 56.3 6.7 84 116-203 23-122 (141)
201 COG0357 GidB Predicted S-adeno 97.7 0.00013 2.8E-09 59.5 6.3 119 119-272 68-196 (215)
202 PRK04338 N(2),N(2)-dimethylgua 97.6 0.00015 3.2E-09 64.8 6.9 90 119-217 58-157 (382)
203 COG2521 Predicted archaeal met 97.6 0.00049 1.1E-08 56.0 8.7 127 116-272 132-278 (287)
204 COG4798 Predicted methyltransf 97.6 0.00086 1.9E-08 53.1 9.7 138 115-269 45-203 (238)
205 COG0030 KsgA Dimethyladenosine 97.6 0.00056 1.2E-08 57.3 9.2 75 104-182 19-101 (259)
206 COG4076 Predicted RNA methylas 97.5 0.00018 3.8E-09 56.5 5.2 95 120-219 34-136 (252)
207 COG4262 Predicted spermidine s 97.5 0.00075 1.6E-08 58.5 9.0 92 117-217 288-406 (508)
208 TIGR02143 trmA_only tRNA (urac 97.4 0.00038 8.2E-09 61.7 6.6 51 120-172 199-256 (353)
209 PRK11760 putative 23S rRNA C24 97.4 0.0076 1.6E-07 52.4 14.2 99 116-224 209-310 (357)
210 KOG2915 tRNA(1-methyladenosine 97.4 0.0043 9.4E-08 51.8 12.0 118 92-221 78-213 (314)
211 PF00398 RrnaAD: Ribosomal RNA 97.4 0.0009 2E-08 56.8 8.1 97 102-207 17-123 (262)
212 KOG3420 Predicted RNA methylas 97.4 0.0002 4.4E-09 53.8 3.6 68 118-187 48-125 (185)
213 PF02475 Met_10: Met-10+ like- 97.4 0.00039 8.4E-09 56.3 5.4 86 116-207 99-194 (200)
214 COG3897 Predicted methyltransf 97.3 0.0022 4.7E-08 50.9 9.3 103 116-224 77-185 (218)
215 PF03059 NAS: Nicotianamine sy 97.3 0.00093 2E-08 56.6 7.7 95 119-217 121-229 (276)
216 KOG2798 Putative trehalase [Ca 97.3 0.005 1.1E-07 52.4 11.8 136 119-271 151-337 (369)
217 PRK05031 tRNA (uracil-5-)-meth 97.3 0.00052 1.1E-08 61.1 6.4 51 120-172 208-265 (362)
218 KOG1663 O-methyltransferase [S 97.3 0.0021 4.6E-08 52.3 9.2 99 116-223 71-187 (237)
219 COG0293 FtsJ 23S rRNA methylas 97.3 0.0026 5.6E-08 51.3 9.6 104 106-218 35-159 (205)
220 COG2384 Predicted SAM-dependen 97.3 0.0077 1.7E-07 48.9 12.0 116 117-269 15-141 (226)
221 KOG3115 Methyltransferase-like 97.3 0.00035 7.5E-09 55.6 4.2 100 119-221 61-186 (249)
222 TIGR00027 mthyl_TIGR00027 meth 97.3 0.0085 1.8E-07 50.8 13.0 147 117-269 80-248 (260)
223 PF09445 Methyltransf_15: RNA 97.3 0.00012 2.7E-09 57.0 1.5 62 120-183 1-76 (163)
224 COG5459 Predicted rRNA methyla 97.2 0.00014 3E-09 62.5 1.7 100 120-222 115-229 (484)
225 PF01728 FtsJ: FtsJ-like methy 97.2 0.00028 6E-09 56.4 3.2 92 118-216 23-137 (181)
226 COG0500 SmtA SAM-dependent met 97.2 0.0039 8.6E-08 47.6 9.5 95 122-223 52-160 (257)
227 PF07091 FmrO: Ribosomal RNA m 97.1 0.00072 1.6E-08 56.0 4.9 89 118-207 105-201 (251)
228 KOG3201 Uncharacterized conser 97.1 0.00028 6E-09 54.1 2.1 94 120-218 31-140 (201)
229 PF01170 UPF0020: Putative RNA 97.1 0.0014 3.1E-08 52.2 6.2 92 116-207 26-143 (179)
230 PF13578 Methyltransf_24: Meth 97.1 0.00048 1E-08 49.8 3.0 90 123-218 1-105 (106)
231 PRK11933 yebU rRNA (cytosine-C 97.1 0.007 1.5E-07 55.6 11.1 103 116-221 111-245 (470)
232 KOG3987 Uncharacterized conser 97.0 0.00025 5.4E-09 56.6 1.0 147 118-273 112-262 (288)
233 PF02384 N6_Mtase: N-6 DNA Met 97.0 0.0038 8.2E-08 54.4 8.5 100 116-218 44-183 (311)
234 TIGR01444 fkbM_fam methyltrans 97.0 0.002 4.2E-08 49.2 5.8 52 121-172 1-59 (143)
235 COG3315 O-Methyltransferase in 96.8 0.015 3.2E-07 50.2 10.1 145 119-269 93-262 (297)
236 PRK11783 rlmL 23S rRNA m(2)G24 96.8 0.016 3.4E-07 56.2 11.4 100 117-219 189-348 (702)
237 PF11312 DUF3115: Protein of u 96.7 0.0026 5.7E-08 54.4 4.5 99 119-220 87-244 (315)
238 PF01269 Fibrillarin: Fibrilla 96.6 0.077 1.7E-06 43.4 12.4 141 116-282 71-226 (229)
239 COG1889 NOP1 Fibrillarin-like 96.6 0.19 4.2E-06 40.3 14.3 140 116-282 74-228 (231)
240 KOG1269 SAM-dependent methyltr 96.5 0.0037 8.1E-08 55.3 4.8 103 116-224 108-221 (364)
241 TIGR02987 met_A_Alw26 type II 96.5 0.011 2.5E-07 55.3 8.0 66 118-183 31-119 (524)
242 PF03602 Cons_hypoth95: Conser 96.4 0.0072 1.6E-07 48.4 5.6 98 118-222 42-156 (183)
243 PF04989 CmcI: Cephalosporin h 96.4 0.011 2.3E-07 47.9 6.6 96 120-221 34-150 (206)
244 KOG4589 Cell division protein 96.4 0.031 6.7E-07 44.2 8.4 63 116-182 67-142 (232)
245 COG1041 Predicted DNA modifica 96.3 0.1 2.3E-06 45.5 12.3 99 116-219 195-311 (347)
246 KOG2918 Carboxymethyl transfer 96.3 0.09 1.9E-06 45.0 11.5 151 116-272 85-278 (335)
247 KOG1709 Guanidinoacetate methy 96.3 0.057 1.2E-06 43.7 9.8 117 95-220 82-208 (271)
248 COG1092 Predicted SAM-dependen 96.3 0.011 2.3E-07 52.9 6.3 95 119-218 218-336 (393)
249 TIGR00006 S-adenosyl-methyltra 96.2 0.017 3.7E-07 49.8 7.1 65 105-172 10-80 (305)
250 KOG2793 Putative N2,N2-dimethy 96.2 0.035 7.7E-07 46.3 8.5 96 118-219 86-200 (248)
251 PLN02668 indole-3-acetate carb 96.2 0.056 1.2E-06 48.2 10.1 149 118-269 63-307 (386)
252 TIGR00308 TRM1 tRNA(guanine-26 96.0 0.02 4.3E-07 51.1 6.8 89 120-217 46-146 (374)
253 COG2520 Predicted methyltransf 96.0 0.069 1.5E-06 46.8 9.7 118 116-265 186-314 (341)
254 COG2265 TrmA SAM-dependent met 95.9 0.024 5.1E-07 51.5 6.8 84 116-207 291-388 (432)
255 PF03492 Methyltransf_7: SAM d 95.9 0.18 3.9E-06 44.4 12.1 149 116-267 14-249 (334)
256 PF01861 DUF43: Protein of unk 95.8 0.52 1.1E-05 39.1 13.5 86 118-207 44-140 (243)
257 PF03141 Methyltransf_29: Puta 95.7 0.051 1.1E-06 49.5 8.0 130 117-283 364-506 (506)
258 COG1189 Predicted rRNA methyla 95.7 0.18 4E-06 41.6 10.3 139 117-273 78-226 (245)
259 COG1064 AdhP Zn-dependent alco 95.6 0.11 2.4E-06 45.5 9.3 93 116-221 164-262 (339)
260 PF07757 AdoMet_MTase: Predict 95.5 0.012 2.6E-07 42.1 2.5 31 118-150 58-88 (112)
261 PF10672 Methyltrans_SAM: S-ad 95.4 0.11 2.4E-06 44.6 8.7 98 117-218 122-238 (286)
262 PF01795 Methyltransf_5: MraW 95.3 0.048 1.1E-06 47.1 6.1 66 104-172 9-80 (310)
263 KOG2730 Methylase [General fun 95.1 0.015 3.2E-07 47.2 2.3 53 118-172 94-154 (263)
264 COG0742 N6-adenine-specific me 94.9 0.2 4.4E-06 39.9 8.1 100 118-222 43-157 (187)
265 PF04072 LCM: Leucine carboxyl 94.8 0.15 3.2E-06 40.8 7.5 85 117-201 77-182 (183)
266 COG0116 Predicted N6-adenine-s 94.6 0.094 2E-06 46.4 6.2 69 116-184 189-307 (381)
267 KOG1562 Spermidine synthase [A 94.5 0.09 1.9E-06 44.7 5.6 98 116-219 119-237 (337)
268 PF06859 Bin3: Bicoid-interact 94.4 0.036 7.9E-07 39.9 2.7 87 177-273 2-94 (110)
269 PF03514 GRAS: GRAS domain fam 94.3 0.32 6.8E-06 43.6 9.1 112 104-223 99-248 (374)
270 KOG2352 Predicted spermine/spe 93.9 0.45 9.8E-06 43.3 9.1 102 120-225 50-170 (482)
271 KOG4058 Uncharacterized conser 93.8 0.33 7.1E-06 37.0 6.7 97 118-223 72-177 (199)
272 COG0144 Sun tRNA and rRNA cyto 93.4 0.92 2E-05 40.3 10.2 104 116-222 154-292 (355)
273 PF05958 tRNA_U5-meth_tr: tRNA 93.2 0.11 2.4E-06 46.0 4.1 49 120-170 198-253 (352)
274 COG0275 Predicted S-adenosylme 92.9 0.33 7.2E-06 41.5 6.2 66 104-172 12-84 (314)
275 KOG3924 Putative protein methy 92.8 0.34 7.4E-06 42.9 6.4 103 116-224 190-314 (419)
276 KOG2187 tRNA uracil-5-methyltr 92.3 0.21 4.5E-06 45.7 4.5 55 116-172 381-442 (534)
277 COG4627 Uncharacterized protei 91.9 0.042 9.1E-07 42.1 -0.3 41 176-219 47-87 (185)
278 PF02153 PDH: Prephenate dehyd 91.7 0.76 1.6E-05 38.9 7.1 70 132-207 1-71 (258)
279 PF01189 Nol1_Nop2_Fmu: NOL1/N 91.6 0.67 1.5E-05 39.8 6.8 103 116-221 83-222 (283)
280 PF10354 DUF2431: Domain of un 91.3 3.9 8.4E-05 32.1 10.2 119 125-272 3-153 (166)
281 PF05971 Methyltransf_10: Prot 91.2 0.5 1.1E-05 40.7 5.5 74 118-192 102-193 (299)
282 COG1255 Uncharacterized protei 91.0 4.6 9.9E-05 29.5 9.3 81 117-207 12-96 (129)
283 KOG1099 SAM-dependent methyltr 91.0 1.1 2.5E-05 36.8 7.0 93 116-215 39-160 (294)
284 COG1565 Uncharacterized conser 90.9 0.57 1.2E-05 41.2 5.6 60 85-152 51-119 (370)
285 KOG0822 Protein kinase inhibit 90.9 0.78 1.7E-05 42.3 6.6 121 78-207 334-470 (649)
286 cd00315 Cyt_C5_DNA_methylase C 90.7 2.7 5.9E-05 35.9 9.7 124 121-268 2-140 (275)
287 PRK01747 mnmC bifunctional tRN 90.4 1.1 2.3E-05 43.5 7.7 94 119-215 58-203 (662)
288 PF11899 DUF3419: Protein of u 90.1 0.59 1.3E-05 41.8 5.2 61 160-223 274-339 (380)
289 PF03686 UPF0146: Uncharacteri 89.9 2.5 5.3E-05 31.4 7.4 78 117-206 12-95 (127)
290 PRK10742 putative methyltransf 89.9 0.79 1.7E-05 38.3 5.5 73 105-182 76-170 (250)
291 PF06962 rRNA_methylase: Putat 89.0 2.7 5.8E-05 32.0 7.2 105 144-273 1-127 (140)
292 cd08283 FDH_like_1 Glutathione 88.7 4.8 0.0001 36.1 10.1 99 116-219 182-307 (386)
293 PF05206 TRM13: Methyltransfer 88.1 0.91 2E-05 38.4 4.7 36 116-151 16-56 (259)
294 KOG0024 Sorbitol dehydrogenase 87.4 3 6.5E-05 36.2 7.3 96 116-223 167-278 (354)
295 PF02636 Methyltransf_28: Puta 87.3 0.76 1.6E-05 38.7 3.8 33 119-151 19-59 (252)
296 PF05711 TylF: Macrocin-O-meth 87.2 1.6 3.5E-05 36.6 5.6 95 119-218 75-211 (248)
297 PF13460 NAD_binding_10: NADH( 87.0 12 0.00025 29.3 10.4 133 125-272 3-144 (183)
298 PF05430 Methyltransf_30: S-ad 86.7 5.8 0.00013 29.5 7.8 53 196-283 71-123 (124)
299 KOG1501 Arginine N-methyltrans 85.4 1 2.2E-05 40.7 3.6 88 118-206 66-165 (636)
300 COG1063 Tdh Threonine dehydrog 85.4 3 6.5E-05 37.0 6.7 93 120-223 170-274 (350)
301 COG0287 TyrA Prephenate dehydr 85.1 3.8 8.3E-05 35.1 7.0 82 120-207 4-90 (279)
302 cd01842 SGNH_hydrolase_like_5 84.9 1.7 3.7E-05 34.3 4.3 43 177-223 51-103 (183)
303 PF07109 Mg-por_mtran_C: Magne 84.7 2.1 4.5E-05 30.2 4.2 83 184-283 3-97 (97)
304 PF03721 UDPG_MGDP_dh_N: UDP-g 84.3 1.7 3.6E-05 34.8 4.2 99 121-224 2-125 (185)
305 PRK07502 cyclohexadienyl dehyd 83.9 5 0.00011 34.8 7.4 84 119-207 6-92 (307)
306 PF02254 TrkA_N: TrkA-N domain 83.3 6.1 0.00013 28.4 6.7 81 127-216 4-94 (116)
307 PRK07417 arogenate dehydrogena 83.1 4.8 0.0001 34.4 6.9 79 121-207 2-83 (279)
308 PF14740 DUF4471: Domain of un 82.1 1.1 2.3E-05 38.5 2.4 78 160-268 199-286 (289)
309 COG1748 LYS9 Saccharopine dehy 80.8 9.6 0.00021 34.3 8.0 65 120-184 2-76 (389)
310 PTZ00357 methyltransferase; Pr 80.7 7.8 0.00017 37.4 7.6 129 77-207 640-823 (1072)
311 KOG2651 rRNA adenine N-6-methy 80.6 3.6 7.8E-05 36.6 5.1 37 116-153 151-187 (476)
312 PF01210 NAD_Gly3P_dh_N: NAD-d 79.1 2.4 5.2E-05 32.8 3.3 87 121-217 1-101 (157)
313 PRK06719 precorrin-2 dehydroge 79.0 17 0.00037 28.2 8.1 63 118-183 12-77 (157)
314 PRK09424 pntA NAD(P) transhydr 78.4 12 0.00026 35.1 8.1 94 118-219 164-286 (509)
315 COG0541 Ffh Signal recognition 77.7 7.3 0.00016 35.3 6.2 103 119-224 100-227 (451)
316 TIGR01470 cysG_Nterm siroheme 77.5 7.6 0.00017 31.6 5.9 63 119-183 9-76 (205)
317 PRK05562 precorrin-2 dehydroge 77.1 13 0.00028 30.7 7.2 66 118-184 24-93 (223)
318 PF00107 ADH_zinc_N: Zinc-bind 77.0 10 0.00022 27.7 6.2 82 128-221 1-92 (130)
319 TIGR00675 dcm DNA-methyltransf 76.8 14 0.00031 32.2 7.8 118 122-267 1-136 (315)
320 COG3510 CmcI Cephalosporin hyd 76.6 28 0.00061 28.1 8.5 103 118-225 69-187 (237)
321 cd08237 ribitol-5-phosphate_DH 76.3 37 0.0008 29.7 10.5 93 117-219 162-257 (341)
322 TIGR01202 bchC 2-desacetyl-2-h 73.1 53 0.0011 28.3 10.5 85 119-219 145-232 (308)
323 KOG2920 Predicted methyltransf 72.7 3.1 6.7E-05 35.4 2.5 36 118-154 116-152 (282)
324 PLN02353 probable UDP-glucose 72.3 26 0.00056 32.5 8.7 100 120-224 2-132 (473)
325 COG0686 Ald Alanine dehydrogen 72.0 15 0.00033 31.9 6.5 85 120-207 169-260 (371)
326 PF07279 DUF1442: Protein of u 71.9 33 0.00072 28.1 8.1 94 119-222 42-152 (218)
327 KOG1209 1-Acyl dihydroxyaceton 71.8 56 0.0012 27.0 9.5 74 117-214 5-82 (289)
328 KOG2352 Predicted spermine/spe 71.7 3.3 7.2E-05 37.9 2.6 131 85-225 267-422 (482)
329 PRK08507 prephenate dehydrogen 71.5 12 0.00026 31.8 6.0 79 121-207 2-83 (275)
330 COG5379 BtaA S-adenosylmethion 71.5 5.4 0.00012 34.2 3.6 56 160-218 306-366 (414)
331 PRK13699 putative methylase; P 69.9 25 0.00055 29.0 7.4 76 163-270 2-95 (227)
332 KOG2539 Mitochondrial/chloropl 69.5 15 0.00032 33.7 6.1 99 120-221 202-318 (491)
333 KOG2666 UDP-glucose/GDP-mannos 66.5 7.8 0.00017 33.7 3.6 64 120-183 2-85 (481)
334 PTZ00117 malate dehydrogenase; 65.7 54 0.0012 28.7 8.9 65 119-184 5-81 (319)
335 CHL00194 ycf39 Ycf39; Provisio 65.6 89 0.0019 27.0 10.6 61 121-183 2-71 (317)
336 PRK11064 wecC UDP-N-acetyl-D-m 64.8 70 0.0015 29.2 9.8 99 120-223 4-123 (415)
337 KOG1269 SAM-dependent methyltr 64.1 15 0.00033 32.7 5.2 104 118-226 180-321 (364)
338 PF04445 SAM_MT: Putative SAM- 64.1 8.6 0.00019 32.0 3.4 65 120-186 77-161 (234)
339 PF11599 AviRa: RRNA methyltra 64.1 26 0.00057 28.8 6.0 97 117-216 50-212 (246)
340 PRK03659 glutathione-regulated 63.7 32 0.00069 33.0 7.7 85 121-216 402-496 (601)
341 PF12692 Methyltransf_17: S-ad 63.5 57 0.0012 25.1 7.3 51 120-172 30-82 (160)
342 PRK00066 ldh L-lactate dehydro 62.3 51 0.0011 28.8 8.1 100 118-218 5-122 (315)
343 cd05213 NAD_bind_Glutamyl_tRNA 62.2 42 0.00091 29.2 7.6 122 118-261 177-302 (311)
344 PRK11730 fadB multifunctional 62.1 47 0.001 32.7 8.6 148 119-275 313-497 (715)
345 PHA01634 hypothetical protein 61.5 12 0.00027 27.9 3.4 36 119-155 29-65 (156)
346 PRK09880 L-idonate 5-dehydroge 61.4 37 0.0008 29.7 7.2 91 118-219 169-267 (343)
347 cd05290 LDH_3 A subgroup of L- 60.8 48 0.001 28.8 7.7 96 122-218 2-119 (307)
348 PRK12491 pyrroline-5-carboxyla 60.5 30 0.00066 29.4 6.3 82 120-207 3-89 (272)
349 PF07991 IlvN: Acetohydroxy ac 60.1 14 0.0003 28.9 3.7 89 119-219 4-95 (165)
350 KOG1098 Putative SAM-dependent 59.5 19 0.00041 34.3 5.0 37 116-152 42-79 (780)
351 cd05291 HicDH_like L-2-hydroxy 59.3 76 0.0016 27.5 8.7 97 121-218 2-117 (306)
352 PRK09496 trkA potassium transp 59.1 97 0.0021 28.3 9.8 80 121-207 2-91 (453)
353 PRK06545 prephenate dehydrogen 59.0 39 0.00084 30.1 6.9 82 121-207 2-87 (359)
354 TIGR02822 adh_fam_2 zinc-bindi 58.8 76 0.0016 27.6 8.7 89 116-220 163-256 (329)
355 PF10017 Methyltransf_33: Hist 58.3 20 0.00043 26.7 4.2 28 247-274 93-120 (127)
356 PRK09496 trkA potassium transp 58.2 45 0.00097 30.5 7.5 62 119-182 231-303 (453)
357 PF03807 F420_oxidored: NADP o 57.9 6.8 0.00015 27.1 1.6 79 128-216 6-91 (96)
358 PRK10669 putative cation:proto 57.6 48 0.001 31.5 7.7 81 127-216 423-513 (558)
359 smart00859 Semialdhyde_dh Semi 57.1 71 0.0015 23.1 7.1 74 129-207 11-91 (122)
360 TIGR03026 NDP-sugDHase nucleot 57.0 1E+02 0.0022 28.0 9.4 96 121-221 2-122 (411)
361 PRK08293 3-hydroxybutyryl-CoA 56.0 57 0.0012 27.9 7.3 84 120-207 4-112 (287)
362 TIGR02437 FadB fatty oxidation 55.7 56 0.0012 32.2 7.9 150 118-275 312-497 (714)
363 PRK06718 precorrin-2 dehydroge 55.6 1.1E+02 0.0024 24.7 8.7 65 118-184 9-78 (202)
364 PRK07819 3-hydroxybutyryl-CoA 55.5 55 0.0012 28.1 7.1 90 120-218 6-120 (286)
365 TIGR00561 pntA NAD(P) transhyd 55.4 40 0.00088 31.6 6.5 95 119-222 164-286 (511)
366 PRK11154 fadJ multifunctional 55.2 73 0.0016 31.3 8.6 148 119-275 309-494 (708)
367 PRK10637 cysG siroheme synthas 55.0 48 0.001 30.6 7.0 64 118-183 11-79 (457)
368 PRK08818 prephenate dehydrogen 54.6 47 0.001 29.8 6.6 70 120-207 5-80 (370)
369 PRK09260 3-hydroxybutyryl-CoA 54.5 88 0.0019 26.7 8.2 145 120-275 2-186 (288)
370 PF03446 NAD_binding_2: NAD bi 54.3 12 0.00026 29.0 2.6 84 121-216 3-91 (163)
371 PF10237 N6-adenineMlase: Prob 54.1 1E+02 0.0023 24.0 11.8 93 117-218 24-123 (162)
372 PRK05479 ketol-acid reductoiso 54.0 28 0.00061 30.6 5.1 81 119-207 17-100 (330)
373 cd05188 MDR Medium chain reduc 53.7 1.2E+02 0.0027 24.7 10.6 92 117-220 133-234 (271)
374 PF14338 Mrr_N: Mrr N-terminal 53.4 5.2 0.00011 27.9 0.4 30 2-35 62-91 (92)
375 PRK09273 hypothetical protein; 53.4 13 0.00029 30.2 2.7 41 118-158 62-102 (211)
376 PRK08267 short chain dehydroge 52.9 1.3E+02 0.0028 24.8 9.2 52 120-172 2-59 (260)
377 PRK03562 glutathione-regulated 52.6 61 0.0013 31.3 7.5 87 120-216 401-496 (621)
378 cd08254 hydroxyacyl_CoA_DH 6-h 51.8 84 0.0018 27.0 7.9 91 116-219 163-264 (338)
379 KOG1227 Putative methyltransfe 51.0 5.6 0.00012 34.2 0.3 99 119-224 195-303 (351)
380 COG0270 Dcm Site-specific DNA 50.5 1.2E+02 0.0027 26.5 8.6 120 119-266 3-142 (328)
381 PRK06223 malate dehydrogenase; 50.5 1.1E+02 0.0024 26.3 8.4 64 120-184 3-78 (307)
382 PF03435 Saccharop_dh: Sacchar 50.2 57 0.0012 29.2 6.6 63 122-184 1-75 (386)
383 PRK10458 DNA cytosine methylas 49.8 1.7E+02 0.0036 27.3 9.6 30 119-150 88-118 (467)
384 TIGR02764 spore_ybaN_pdaB poly 49.5 47 0.001 26.4 5.4 55 189-269 133-187 (191)
385 PRK05225 ketol-acid reductoiso 49.5 16 0.00034 33.6 2.9 88 119-217 36-130 (487)
386 PF03269 DUF268: Caenorhabditi 49.5 23 0.0005 27.7 3.3 100 120-224 3-117 (177)
387 TIGR01120 rpiB ribose 5-phosph 49.5 20 0.00043 27.4 3.0 40 120-159 57-96 (143)
388 PRK07680 late competence prote 49.1 49 0.0011 28.0 5.8 81 121-207 2-88 (273)
389 TIGR00872 gnd_rel 6-phosphoglu 49.0 33 0.00072 29.6 4.8 83 121-216 2-90 (298)
390 COG2085 Predicted dinucleotide 49.0 34 0.00073 28.0 4.4 85 127-222 7-95 (211)
391 cd01338 MDH_choloroplast_like 48.9 1.6E+02 0.0035 25.8 9.0 97 120-218 3-128 (322)
392 PRK07530 3-hydroxybutyryl-CoA 48.7 1.1E+02 0.0024 26.1 8.0 146 119-274 4-187 (292)
393 COG0604 Qor NADPH:quinone redu 48.4 38 0.00082 29.7 5.1 94 116-221 140-244 (326)
394 COG2910 Putative NADH-flavin r 48.3 1.5E+02 0.0032 24.0 8.3 87 127-218 7-104 (211)
395 PRK06482 short chain dehydroge 48.2 1.6E+02 0.0035 24.5 9.5 52 120-172 3-59 (276)
396 PF05050 Methyltransf_21: Meth 47.9 28 0.00061 26.4 3.8 30 124-153 1-35 (167)
397 TIGR00689 rpiB_lacA_lacB sugar 47.8 22 0.00047 27.2 3.0 39 121-159 57-95 (144)
398 COG0677 WecC UDP-N-acetyl-D-ma 47.2 2.2E+02 0.0049 25.9 11.4 99 120-224 10-133 (436)
399 PF01555 N6_N4_Mtase: DNA meth 47.1 26 0.00057 28.2 3.7 39 117-157 190-229 (231)
400 PHA03108 poly(A) polymerase sm 47.1 97 0.0021 26.5 6.8 31 120-150 62-96 (300)
401 TIGR01771 L-LDH-NAD L-lactate 46.9 59 0.0013 28.2 6.0 93 125-218 2-113 (299)
402 PF01358 PARP_regulatory: Poly 46.3 29 0.00063 29.8 3.8 50 118-167 58-111 (294)
403 PRK15057 UDP-glucose 6-dehydro 46.3 2.3E+02 0.0049 25.6 10.0 96 121-223 2-121 (388)
404 TIGR01763 MalateDH_bact malate 46.1 1.2E+02 0.0026 26.3 7.8 98 120-218 2-118 (305)
405 PRK05571 ribose-5-phosphate is 46.0 24 0.00052 27.1 3.0 37 123-159 62-98 (148)
406 COG0039 Mdh Malate/lactate deh 45.8 2.1E+02 0.0044 25.1 9.0 98 121-219 2-119 (313)
407 TIGR02441 fa_ox_alpha_mit fatt 45.7 83 0.0018 31.1 7.3 149 119-275 335-519 (737)
408 PF08845 SymE_toxin: Toxin Sym 45.3 19 0.00041 22.7 1.9 14 257-270 31-44 (57)
409 KOG3851 Sulfide:quinone oxidor 45.3 34 0.00073 30.1 4.0 34 117-150 37-72 (446)
410 PF02502 LacAB_rpiB: Ribose/Ga 45.0 16 0.00034 27.8 1.8 40 120-159 57-96 (140)
411 PTZ00082 L-lactate dehydrogena 44.8 2.2E+02 0.0047 25.0 9.6 64 120-184 7-82 (321)
412 PLN02896 cinnamyl-alcohol dehy 44.5 2.2E+02 0.0047 24.9 10.1 68 117-185 8-88 (353)
413 cd00300 LDH_like L-lactate deh 44.2 1.1E+02 0.0024 26.4 7.3 94 124-218 3-115 (300)
414 COG2933 Predicted SAM-dependen 44.2 63 0.0014 27.5 5.3 84 116-207 209-295 (358)
415 cd05294 LDH-like_MDH_nadp A la 44.0 1.9E+02 0.0042 25.0 8.8 97 121-218 2-121 (309)
416 PRK14806 bifunctional cyclohex 43.9 83 0.0018 31.0 7.2 83 120-207 4-89 (735)
417 PF07101 DUF1363: Protein of u 43.7 10 0.00022 26.4 0.6 19 122-140 6-24 (124)
418 COG2081 Predicted flavoprotein 43.6 23 0.00051 31.8 3.0 51 120-170 4-57 (408)
419 PRK05993 short chain dehydroge 43.5 2E+02 0.0042 24.1 10.3 98 120-220 5-136 (277)
420 PRK07666 fabG 3-ketoacyl-(acyl 42.5 1.8E+02 0.0039 23.5 8.7 65 120-185 8-93 (239)
421 TIGR03366 HpnZ_proposed putati 42.4 2.1E+02 0.0045 24.1 9.7 92 118-221 120-221 (280)
422 PRK15182 Vi polysaccharide bio 42.3 93 0.002 28.5 6.8 97 120-224 7-125 (425)
423 TIGR03376 glycerol3P_DH glycer 42.1 1.4E+02 0.0031 26.4 7.7 28 175-207 81-108 (342)
424 PF11253 DUF3052: Protein of u 42.0 1.4E+02 0.0031 22.2 7.2 72 177-277 46-118 (127)
425 PRK07679 pyrroline-5-carboxyla 42.0 82 0.0018 26.8 6.1 82 120-207 4-91 (279)
426 PTZ00325 malate dehydrogenase; 41.9 2.3E+02 0.005 24.8 8.9 100 119-218 8-125 (321)
427 PLN02688 pyrroline-5-carboxyla 41.9 84 0.0018 26.3 6.1 85 121-216 2-92 (266)
428 PF03698 UPF0180: Uncharacteri 41.3 38 0.00081 23.0 3.0 25 249-273 7-31 (80)
429 PRK12921 2-dehydropantoate 2-r 41.0 1.4E+02 0.0031 25.4 7.5 86 121-217 2-101 (305)
430 PRK04176 ribulose-1,5-biphosph 40.7 71 0.0015 26.9 5.4 31 120-150 26-56 (257)
431 PRK06181 short chain dehydroge 40.5 1.9E+02 0.0041 23.8 8.1 52 120-172 2-61 (263)
432 TIGR00631 uvrb excinuclease AB 40.5 1.6E+02 0.0034 28.8 8.3 32 245-276 159-190 (655)
433 PF03486 HI0933_like: HI0933-l 40.0 6.3 0.00014 35.8 -1.2 47 121-167 2-51 (409)
434 PRK13403 ketol-acid reductoiso 39.5 67 0.0014 28.3 5.0 88 119-219 16-106 (335)
435 TIGR01692 HIBADH 3-hydroxyisob 39.3 94 0.002 26.5 6.1 80 128-217 3-88 (288)
436 PF13241 NAD_binding_7: Putati 39.3 1.3E+02 0.0029 21.1 8.2 60 119-183 7-67 (103)
437 PLN02712 arogenate dehydrogena 39.1 1.1E+02 0.0024 29.8 7.1 81 118-207 51-135 (667)
438 PRK08655 prephenate dehydrogen 39.0 93 0.002 28.6 6.2 79 121-207 2-84 (437)
439 PRK12615 galactose-6-phosphate 39.0 36 0.00078 26.8 3.1 39 121-159 59-97 (171)
440 PRK12490 6-phosphogluconate de 39.0 38 0.00083 29.2 3.6 78 122-207 3-86 (299)
441 PLN03209 translocon at the inn 38.9 2.8E+02 0.0061 26.6 9.4 102 117-220 78-209 (576)
442 COG0698 RpiB Ribose 5-phosphat 38.3 38 0.00082 26.1 3.0 40 120-159 59-98 (151)
443 COG0373 HemA Glutamyl-tRNA red 38.2 1.1E+02 0.0023 28.0 6.3 99 118-227 177-281 (414)
444 PRK06928 pyrroline-5-carboxyla 38.1 98 0.0021 26.3 5.9 81 121-207 3-90 (277)
445 COG0451 WcaG Nucleoside-diphos 38.0 1.3E+02 0.0028 25.5 6.8 83 122-207 3-105 (314)
446 TIGR03329 Phn_aa_oxid putative 38.0 39 0.00083 31.1 3.7 32 120-151 25-58 (460)
447 PRK06522 2-dehydropantoate 2-r 37.7 1.5E+02 0.0032 25.2 7.1 88 121-219 2-101 (304)
448 PLN00112 malate dehydrogenase 37.6 2.1E+02 0.0046 26.4 8.2 102 116-218 97-226 (444)
449 TIGR01119 lacB galactose-6-pho 37.6 38 0.00082 26.7 3.0 38 122-159 60-97 (171)
450 PRK05298 excinuclease ABC subu 37.5 1.9E+02 0.004 28.2 8.3 32 245-276 162-193 (652)
451 PRK09489 rsmC 16S ribosomal RN 37.4 2.9E+02 0.0064 24.4 9.7 94 120-222 21-116 (342)
452 PRK15001 SAM-dependent 23S rib 37.4 1.4E+02 0.003 26.9 6.9 90 120-220 46-144 (378)
453 PF08484 Methyltransf_14: C-me 37.4 2E+02 0.0042 22.4 9.8 90 117-216 66-157 (160)
454 PF00145 DNA_methylase: C-5 cy 36.8 71 0.0015 27.5 5.0 119 121-267 2-138 (335)
455 PF01488 Shikimate_DH: Shikima 36.7 37 0.0008 25.4 2.8 70 118-187 11-86 (135)
456 PLN02602 lactate dehydrogenase 36.6 2.3E+02 0.0049 25.3 8.1 98 120-218 38-154 (350)
457 PF02056 Glyco_hydro_4: Family 36.5 26 0.00057 27.9 2.0 63 121-183 1-80 (183)
458 COG0503 Apt Adenine/guanine ph 36.4 80 0.0017 25.0 4.8 44 200-271 108-151 (179)
459 TIGR02440 FadJ fatty oxidation 36.1 1.8E+02 0.0039 28.6 8.0 147 120-275 305-489 (699)
460 PRK05708 2-dehydropantoate 2-r 35.7 2.9E+02 0.0063 23.8 9.3 94 120-222 3-108 (305)
461 cd08232 idonate-5-DH L-idonate 35.7 2.9E+02 0.0062 23.8 9.0 89 118-218 165-262 (339)
462 cd00401 AdoHcyase S-adenosyl-L 35.7 1.5E+02 0.0031 27.2 6.8 86 118-218 201-289 (413)
463 TIGR01772 MDH_euk_gproteo mala 35.7 2.1E+02 0.0046 25.0 7.6 98 122-219 2-117 (312)
464 PF12242 Eno-Rase_NADH_b: NAD( 35.5 40 0.00086 22.7 2.4 33 116-148 36-70 (78)
465 PRK07574 formate dehydrogenase 35.5 1E+02 0.0022 27.8 5.8 81 120-207 193-276 (385)
466 cd00704 MDH Malate dehydrogena 35.4 1.8E+02 0.0039 25.5 7.2 47 172-218 72-126 (323)
467 PRK05808 3-hydroxybutyryl-CoA 35.3 2E+02 0.0044 24.3 7.5 88 120-218 4-117 (282)
468 TIGR03451 mycoS_dep_FDH mycoth 35.1 1.8E+02 0.0038 25.6 7.3 94 116-220 174-278 (358)
469 PTZ00215 ribose 5-phosphate is 35.0 45 0.00096 25.7 3.0 37 123-159 65-101 (151)
470 PRK08229 2-dehydropantoate 2-r 34.9 2.3E+02 0.0051 24.6 8.0 80 120-207 3-99 (341)
471 cd08255 2-desacetyl-2-hydroxye 34.8 2.6E+02 0.0057 23.1 8.2 90 116-218 95-190 (277)
472 PF02558 ApbA: Ketopantoate re 34.7 97 0.0021 23.2 4.9 90 122-221 1-104 (151)
473 PRK05442 malate dehydrogenase; 34.6 3.2E+02 0.0069 24.0 8.9 100 118-218 3-130 (326)
474 COG3129 Predicted SAM-dependen 34.6 68 0.0015 26.8 4.1 72 118-191 78-168 (292)
475 PRK12939 short chain dehydroge 34.5 2.5E+02 0.0054 22.7 9.6 53 119-172 7-67 (250)
476 PRK08622 galactose-6-phosphate 34.3 44 0.00096 26.3 2.9 38 122-159 60-97 (171)
477 PLN02819 lysine-ketoglutarate 34.3 79 0.0017 32.6 5.3 66 119-184 569-656 (1042)
478 PF14947 HTH_45: Winged helix- 34.1 15 0.00033 24.6 0.2 26 1-31 40-65 (77)
479 PF01638 HxlR: HxlR-like helix 33.8 15 0.00031 25.4 0.1 32 1-32 40-73 (90)
480 PLN03139 formate dehydrogenase 33.4 99 0.0022 27.9 5.4 81 119-207 199-283 (386)
481 PRK07066 3-hydroxybutyryl-CoA 33.1 1.3E+02 0.0029 26.4 6.0 85 119-207 7-111 (321)
482 cd08230 glucose_DH Glucose deh 32.8 3.4E+02 0.0073 23.7 9.1 91 118-221 172-272 (355)
483 PRK06130 3-hydroxybutyryl-CoA 32.6 2E+02 0.0044 24.7 7.2 91 119-218 4-114 (311)
484 cd05298 GH4_GlvA_pagL_like Gly 32.4 70 0.0015 29.4 4.3 62 121-183 2-81 (437)
485 KOG2811 Uncharacterized conser 32.4 72 0.0016 28.5 4.1 31 120-150 184-217 (420)
486 PRK05565 fabG 3-ketoacyl-(acyl 32.4 2.7E+02 0.0058 22.4 8.6 52 120-172 6-66 (247)
487 PRK13243 glyoxylate reductase; 32.3 94 0.002 27.4 5.0 80 119-207 150-232 (333)
488 COG4353 Uncharacterized conser 32.3 1E+02 0.0022 24.0 4.4 61 194-273 72-132 (192)
489 cd05197 GH4_glycoside_hydrolas 32.2 72 0.0016 29.2 4.4 62 121-183 2-81 (425)
490 PF02005 TRM: N2,N2-dimethylgu 32.2 1.6E+02 0.0035 26.5 6.5 93 117-218 48-154 (377)
491 PF10727 Rossmann-like: Rossma 32.1 1.9E+02 0.0042 21.4 5.9 88 119-219 10-104 (127)
492 COG0059 IlvC Ketol-acid reduct 32.1 1.5E+02 0.0033 25.9 5.9 81 119-207 18-101 (338)
493 COG1568 Predicted methyltransf 32.0 1.3E+02 0.0028 26.0 5.3 82 118-207 152-249 (354)
494 KOG1596 Fibrillarin and relate 31.9 3E+02 0.0065 23.3 7.3 94 116-217 154-260 (317)
495 PF13319 DUF4090: Protein of u 31.7 42 0.00091 22.4 2.0 27 244-270 53-79 (84)
496 PRK12480 D-lactate dehydrogena 31.7 2.1E+02 0.0045 25.2 7.0 78 120-207 147-226 (330)
497 PF09822 ABC_transp_aux: ABC-t 31.7 1.2E+02 0.0027 25.5 5.6 49 163-218 182-232 (271)
498 TIGR01758 MDH_euk_cyt malate d 31.5 2.5E+02 0.0055 24.6 7.5 46 173-218 72-125 (324)
499 cd05278 FDH_like Formaldehyde 31.0 3.3E+02 0.0072 23.4 8.4 92 116-218 165-267 (347)
500 PRK08263 short chain dehydroge 30.8 3.1E+02 0.0068 22.8 8.9 52 120-172 4-60 (275)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=9.3e-46 Score=310.65 Aligned_cols=235 Identities=33% Similarity=0.632 Sum_probs=205.6
Q ss_pred CceEecchhcchhhcCCC-CChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhCCchhhHhhcCccHHHHHHHHhh
Q 023384 19 EEAYGLTAASTLLIKDKP-YCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMA 97 (283)
Q Consensus 19 ~~~y~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 97 (283)
++.|+||++|+.|+.+++ .++..++.+...+..+..|.+|.+++++|. ++|...+|.++|+++.++|+..+.|..+|.
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 689999999997666655 577888877666788999999999999998 889999999999999999999999999999
Q ss_pred hhhhhhH-HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCCCCCC
Q 023384 98 SDTEILT-SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPP 176 (283)
Q Consensus 98 ~~~~~~~-~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~ 176 (283)
..++... ..+.. .++ +++..+|||||||+|.++.++++++|+++++++|+|++++.+++.+||+++.||||+++|.
T Consensus 82 ~~~~~~~~~~~~~-~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~ 158 (241)
T PF00891_consen 82 EYSRLNAFDILLE-AFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPV 158 (241)
T ss_dssp HHHHHHHHHHHHH-HST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSS
T ss_pred hhhhcchhhhhhc-ccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcc
Confidence 9888877 77777 788 8888999999999999999999999999999999999999888899999999999998888
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCC--cEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHH
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGER--GKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 254 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~g--g~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 254 (283)
+|+|+++++||+|+|+++++||++++++|+| | |+|+|+|.++++....+........+|++|++.++|++||.+|
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e 235 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEE 235 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHH
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHH
Confidence 9999999999999999999999999999999 7 9999999999998877533222358999999998999999999
Q ss_pred HHHHHH
Q 023384 255 WAKLFF 260 (283)
Q Consensus 255 ~~~ll~ 260 (283)
|++||+
T Consensus 236 ~~~ll~ 241 (241)
T PF00891_consen 236 WEALLK 241 (241)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999985
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=3.5e-40 Score=278.30 Aligned_cols=275 Identities=27% Similarity=0.409 Sum_probs=241.3
Q ss_pred CccccccCeeEeeccCCCCceEecchhcchhhcCC-CCChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhCCchh
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDK-PYCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGIKFW 79 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~ 79 (283)
||.|++++++++.... ...|++++.++++.+++ ..++.++++...++..++.|..+.++++.++ .+|..++|...+
T Consensus 64 lr~L~s~~i~k~~~~~--~~~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~ 140 (342)
T KOG3178|consen 64 LRLLVSYSILKCRLVG--GEVYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLG 140 (342)
T ss_pred HHHHHHhhhceeeeec--ceeeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhh
Confidence 6889999999988620 11799999999666433 4688999998888888999999999999987 688899998899
Q ss_pred hHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 80 EFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 80 ~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
+|...+......|+++|...+......+++ .+. +|++....||+|||.|..+..++..||+++++.+|+|.+++.+..
T Consensus 141 ~~~~~~~~~~~~~~~sm~~l~~~~~~~il~-~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~ 218 (342)
T KOG3178|consen 141 GYGGADERFSKDFNGSMSFLSTLVMKKILE-VYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPY 218 (342)
T ss_pred hhcccccccHHHHHHHHHHHHHHHHHhhhh-hhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhh
Confidence 999999988999999999999988888888 776 488899999999999999999999999999999999999999887
Q ss_pred C-CCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhh-hhhhhhc
Q 023384 160 A-DNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHEL-TETKFLF 237 (283)
Q Consensus 160 ~-~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~-~~~~~~~ 237 (283)
. ..|+.+.||+|++.|..|+||+.++||||+|++|+++|+||+++|+| +|+|++.|.+.++....... ......+
T Consensus 219 ~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~ 295 (342)
T KOG3178|consen 219 LAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDM 295 (342)
T ss_pred hcCCcceecccccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehh
Confidence 5 77999999999999999999999999999999999999999999999 79999999999863322111 1123567
Q ss_pred cccccccc-CCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 238 DIVMSVNA-TGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 238 ~~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
|+.|+... +|++|+.+|++.++.++||.+.++.-.+...++|+++|
T Consensus 296 d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 296 DLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 88888875 59999999999999999999999999999999999987
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=4.8e-33 Score=241.38 Aligned_cols=248 Identities=20% Similarity=0.360 Sum_probs=175.7
Q ss_pred CccccccCeeEeeccCCCCceEecchhcchhhcCCCC----ChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhCC
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPY----CLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGI 76 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ 76 (283)
||+|+++|+|++. ++.|+||+.++.+..+++. ++.++..+... .....|.+|.+++|++. +|...+
T Consensus 44 L~~L~~lgll~~~-----~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~r~~~--~~~~~~-- 113 (306)
T TIGR02716 44 LETLRQMRVINLE-----DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAF-LADDFYMGLSQAVRGQK--NFKGQV-- 113 (306)
T ss_pred HHHHHhCCCeEec-----CCcEecchhHHhhccCCccchhhhcCchHHHHHH-HHHHHHHhHHHHhcCCc--cccccc--
Confidence 6899999999987 5899999999854444332 11233333211 22356899999998543 343222
Q ss_pred chhhHhhcCccHHHHHHHHhh-hhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHh
Q 023384 77 KFWEFMNQNPGINQRFNEAMA-SDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVA 155 (283)
Q Consensus 77 ~~~~~~~~~~~~~~~f~~~m~-~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~ 155 (283)
++....++. ..|...|. .......+.+++ .++ +++..+|||||||+|.+++.+++++|+++++++|+|++++
T Consensus 114 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~ 186 (306)
T TIGR02716 114 ---PYPPVTRED-NLYFEEIHRSNAKFAIQLLLE-EAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAID 186 (306)
T ss_pred ---CCCCCCHHH-HHhHHHHHHhcchhHHHHHHH-HcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHH
Confidence 111122222 23444443 333444566666 666 7788899999999999999999999999999999998887
Q ss_pred cCCC-------CCCeEEEEcCCCC-CCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccc
Q 023384 156 NLPE-------ADNLKYIAGDMFQ-FIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEE 227 (283)
Q Consensus 156 ~a~~-------~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~ 227 (283)
.+++ .+|++++.+|+++ ++|++|+|++++++|+|+++++.++|++++++|+| ||+++|.|.+.++....
T Consensus 187 ~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~~ 263 (306)
T TIGR02716 187 LVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENP 263 (306)
T ss_pred HHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc
Confidence 6653 5789999999997 77789999999999999999999999999999999 89999999988765432
Q ss_pred hhhhhhh-hhcccccccccCCccCCHHHHHHHHHHCCCCeeeEE
Q 023384 228 HELTETK-FLFDIVMSVNATGKERTESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 228 ~~~~~~~-~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 270 (283)
. +.... ......|.... ...++.+||.++|+++||+.++++
T Consensus 264 ~-~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 264 N-FDYLSHYILGAGMPFSV-LGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred h-hhHHHHHHHHccccccc-ccCCCHHHHHHHHHHcCCCeeEec
Confidence 1 11101 11111111111 123458999999999999988764
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.82 E-value=2.6e-20 Score=154.37 Aligned_cols=161 Identities=19% Similarity=0.331 Sum_probs=82.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCCC--ceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIPP--ADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~--~D~v~~~~ 184 (283)
.....+|||+|||||..+..+++.. |+.+++++|+ +++++.+++ ..+|+++.+|..+ |+++ ||+|+++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4556799999999999999999875 6789999999 889988774 3589999999999 8874 99999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcc--cccccc--cC------------Cc
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFD--IVMSVN--AT------------GK 248 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~------------~~ 248 (283)
.||+++|.+ +.|++++++||| ||+++|+|...|+........ ..++. ++.+.. .+ ..
T Consensus 125 glrn~~d~~--~~l~E~~RVLkP---GG~l~ile~~~p~~~~~~~~~--~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~ 197 (233)
T PF01209_consen 125 GLRNFPDRE--RALREMYRVLKP---GGRLVILEFSKPRNPLLRALY--KFYFKYILPLIGRLLSGDREAYRYLPESIRR 197 (233)
T ss_dssp -GGG-SSHH--HHHHHHHHHEEE---EEEEEEEEEEB-SSHHHHHHH--HH-----------------------------
T ss_pred hHHhhCCHH--HHHHHHHHHcCC---CeEEEEeeccCCCCchhhcee--eeeeccccccccccccccccccccccccccc
Confidence 999999865 679999999999 899999999888764321110 01111 111110 01 12
Q ss_pred cCCHHHHHHHHHHCCCCeeeEEEc-CCcceEEEEeC
Q 023384 249 ERTESEWAKLFFDACFSHYKITPI-FGMRFLIEIYP 283 (283)
Q Consensus 249 ~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~~ 283 (283)
..+.+++.++++++||+.++..+. .|..++..++|
T Consensus 198 f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 198 FPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccCC
Confidence 237889999999999999988776 45677777765
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.82 E-value=5.4e-19 Score=145.18 Aligned_cols=161 Identities=17% Similarity=0.284 Sum_probs=122.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCCC--ceEEEecccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIPP--ADAFLFKLVF 186 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~--~D~v~~~~vl 186 (283)
..+.+|||||||||..+..+++..+..+++++|+ +.+++.+++ ...++|+.+|..+ |+|+ ||+|.+++.|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 3578999999999999999999999999999999 889988875 1239999999999 9984 9999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcc--ccccccc---CC-----------ccC
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFD--IVMSVNA---TG-----------KER 250 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~-----------~~~ 250 (283)
|+++|.+ +.|++++|+||| ||+++++|...+.......... ..++. ++.+... +. +..
T Consensus 130 rnv~d~~--~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~~~~~-~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 130 RNVTDID--KALKEMYRVLKP---GGRLLVLEFSKPDNPVLRKAYI-LYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hcCCCHH--HHHHHHHHhhcC---CeEEEEEEcCCCCchhhHHHHH-HHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 9999876 779999999999 8999999998887644321111 01111 1111111 11 234
Q ss_pred CHHHHHHHHHHCCCCeeeEEEc-CCcceEEEEeC
Q 023384 251 TESEWAKLFFDACFSHYKITPI-FGMRFLIEIYP 283 (283)
Q Consensus 251 t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~~ 283 (283)
+.+++.++++++||+.+..... .|...+...+|
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 7899999999999998875444 34455555544
No 6
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.81 E-value=6.4e-20 Score=153.76 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=120.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCCCceEEEeccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIPPADAFLFKLV 185 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~v~~~~v 185 (283)
.+..+|||||||+|..+..+++.+ |+.+++++|+ +++++.+++ ..+++++.+|+.+ +++.+|++++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 456799999999999999999974 7899999999 888877754 3578999999998 7778999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhh--hhc---ccc-------cccc-cCCccCCH
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETK--FLF---DIV-------MSVN-ATGKERTE 252 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~--~~~---~~~-------~~~~-~~~~~~t~ 252 (283)
+|++++++...+|++++++|+| ||.+++.|.+.+++....+..... .+. ... .... ..-...|.
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 9999988888999999999999 899999998776544322110000 000 000 0000 01235689
Q ss_pred HHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 253 SEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 253 ~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
+++++++++|||+.+++........++.++|
T Consensus 209 ~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~~ 239 (239)
T TIGR00740 209 ETHKARLKNVGFSHVELWFQCFNFGSLVAVK 239 (239)
T ss_pred HHHHHHHHHcCCchHHHHHHHHhHhHHheeC
Confidence 9999999999999877644444444444443
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.81 E-value=4.2e-18 Score=144.20 Aligned_cols=160 Identities=21% Similarity=0.210 Sum_probs=120.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC---------CCCeEEEEcCCCC-CCC--CceEEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE---------ADNLKYIAGDMFQ-FIP--PADAFL 181 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~~p--~~D~v~ 181 (283)
.....+|||||||+|.++..+++.+ |+.+++++|+ +++++.+++ ..+++++.+|+.+ |++ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4566899999999999999998875 6789999999 888877643 2479999999988 776 399999
Q ss_pred ecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccc--ccc-cC------------
Q 023384 182 FKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM--SVN-AT------------ 246 (283)
Q Consensus 182 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~------------ 246 (283)
+..++|++++.. ++|++++++||| ||+++++|...++....++.. ..+....+ +.. .+
T Consensus 151 ~~~~l~~~~d~~--~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~l~~s~ 223 (261)
T PLN02233 151 MGYGLRNVVDRL--KAMQEMYRVLKP---GSRVSILDFNKSTQPFTTSMQ--EWMIDNVVVPVATGYGLAKEYEYLKSSI 223 (261)
T ss_pred EecccccCCCHH--HHHHHHHHHcCc---CcEEEEEECCCCCcHHHHHHH--HHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence 999999998765 789999999999 899999998766543221110 00111000 000 00
Q ss_pred CccCCHHHHHHHHHHCCCCeeeEEEcC-CcceEEEEe
Q 023384 247 GKERTESEWAKLFFDACFSHYKITPIF-GMRFLIEIY 282 (283)
Q Consensus 247 ~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~ 282 (283)
...++.+|+.++++++||+.++..... +...+.+++
T Consensus 224 ~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 224 NEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 234689999999999999999887765 566777765
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.78 E-value=6.4e-18 Score=143.24 Aligned_cols=155 Identities=17% Similarity=0.225 Sum_probs=117.3
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCC--C
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIP--P 176 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p--~ 176 (283)
..+++ .+. +.+..+|||||||+|..+..+++.+ ..+++++|+ +.+++.+++ ..++.++.+|+.+ ++| .
T Consensus 42 ~~~l~-~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 42 TKILS-DIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHH-hCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 34455 554 6777899999999999999998875 679999999 777766554 4689999999987 666 4
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHH
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 256 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 256 (283)
||+|++..+++|++.++..++|++++++||| ||++++.|............ .... +........+.+++.
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~ 187 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWDEE--FKAY-----IKKRKYTLIPIQEYG 187 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcHHH--HHHH-----HHhcCCCCCCHHHHH
Confidence 9999999998888876778999999999999 89999999876543221100 0000 000112345889999
Q ss_pred HHHHHCCCCeeeEEEcC
Q 023384 257 KLFFDACFSHYKITPIF 273 (283)
Q Consensus 257 ~ll~~aGf~~~~~~~~~ 273 (283)
++|+++||+.+++....
T Consensus 188 ~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 188 DLIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHHCCCCeeeEEeCc
Confidence 99999999999887653
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.78 E-value=1e-17 Score=139.72 Aligned_cols=161 Identities=18% Similarity=0.228 Sum_probs=119.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC--CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p--~~D~v~~~~ 184 (283)
.....+|||+|||+|.++..+++.+ |..+++++|+ +++++.+++ .++++++.+|..+ +++ .||+|++..
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 5567899999999999999999886 6789999999 777766553 3579999999987 655 499999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccc----------------ccccCCc
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM----------------SVNATGK 248 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 248 (283)
++|++++.. ++|+++.++|+| ||.+++.+...+......... ..++...+ +......
T Consensus 123 ~l~~~~~~~--~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 195 (231)
T TIGR02752 123 GLRNVPDYM--QVLREMYRVVKP---GGKVVCLETSQPTIPGFKQLY--FFYFKYIMPLFGKLFAKSYKEYSWLQESTRD 195 (231)
T ss_pred ccccCCCHH--HHHHHHHHHcCc---CeEEEEEECCCCCChHHHHHH--HHHHcChhHHhhHHhcCCHHHHHHHHHHHHH
Confidence 999988764 789999999999 799998886554432110000 00000000 0000113
Q ss_pred cCCHHHHHHHHHHCCCCeeeEEEcC-CcceEEEEeC
Q 023384 249 ERTESEWAKLFFDACFSHYKITPIF-GMRFLIEIYP 283 (283)
Q Consensus 249 ~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 283 (283)
..+.+++.++|+++||+.+++.... +..++++++|
T Consensus 196 ~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 196 FPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred cCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 3578999999999999999998886 7788888887
No 10
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.77 E-value=5.5e-19 Score=148.64 Aligned_cols=151 Identities=14% Similarity=0.156 Sum_probs=113.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCCCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEA--FPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIPPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~v~~~~ 184 (283)
..+..+|||||||+|..+..+++. .|+.+++++|+ +++++.+++ ..+++++.+|+.+ +.+++|++++..
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~ 133 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 133 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence 346689999999999999999884 68999999999 888887764 3489999999988 777899999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccc---ccc---------ccC--CccC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV---MSV---------NAT--GKER 250 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~--~~~~ 250 (283)
++|++++++...++++++++|+| ||.+++.|.+..+.....+... ..+.++. -+. ... -...
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~ 209 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGELLF-NMHHDFKRANGYSELEISQKRSMLENVMLTD 209 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHhhcccC
Confidence 99999988888999999999999 8999999977655433211100 0011110 000 000 1224
Q ss_pred CHHHHHHHHHHCCCCeeeEE
Q 023384 251 TESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 251 t~~e~~~ll~~aGf~~~~~~ 270 (283)
|+++..++|++|||+.++..
T Consensus 210 ~~~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 210 SVETHKARLHKAGFEHSELW 229 (247)
T ss_pred CHHHHHHHHHHcCchhHHHH
Confidence 88999999999999987654
No 11
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.73 E-value=9.4e-17 Score=139.31 Aligned_cols=139 Identities=27% Similarity=0.286 Sum_probs=110.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCC-CCC--CceEEEecccccCCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLG 190 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~ 190 (283)
...+|||||||+|.++..+++.++..+++++|. +++++.+++ ..+++++.+|+.+ +++ .||+|++..++|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 457999999999999999999998889999999 777777664 4578999999987 655 499999999999999
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEE
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 270 (283)
+.+ ++|++++++|+| ||++++++...++.... ....+..+ ...+.+|+.++++++||+.+++.
T Consensus 193 d~~--~~L~e~~rvLkP---GG~LvIi~~~~p~~~~~------r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 193 DPQ--RGIKEAYRVLKI---GGKACLIGPVHPTFWLS------RFFADVWM------LFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred CHH--HHHHHHHHhcCC---CcEEEEEEecCcchhHH------HHhhhhhc------cCCCHHHHHHHHHHCCCeEEEEE
Confidence 876 689999999999 89998887655432111 11111111 12478999999999999999887
Q ss_pred EcC
Q 023384 271 PIF 273 (283)
Q Consensus 271 ~~~ 273 (283)
...
T Consensus 256 ~i~ 258 (340)
T PLN02490 256 RIG 258 (340)
T ss_pred EcC
Confidence 753
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.73 E-value=1.8e-16 Score=134.20 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=108.5
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-C-CCCceEEE
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-F-IPPADAFL 181 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~-~p~~D~v~ 181 (283)
..+++ .+. .....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .+++++.+|+.+ + .+.||+|+
T Consensus 19 ~~ll~-~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 19 YDLLA-RVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHHH-hCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEE
Confidence 34455 554 55678999999999999999999999999999999 888888764 468899999876 3 23599999
Q ss_pred ecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhh----hhccc-ccc-cccCCccCCHHHH
Q 023384 182 FKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETK----FLFDI-VMS-VNATGKERTESEW 255 (283)
Q Consensus 182 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~----~~~~~-~~~-~~~~~~~~t~~e~ 255 (283)
+..++|++++.. ++|++++++|+| ||++++......+..... ..... .+... ... ...+....+.+++
T Consensus 95 ~~~~l~~~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 168 (255)
T PRK14103 95 SNAALQWVPEHA--DLLVRWVDELAP---GSWIAVQVPGNFDAPSHA-AVRALARREPWAKLLRDIPFRVGAVVQTPAGY 168 (255)
T ss_pred EehhhhhCCCHH--HHHHHHHHhCCC---CcEEEEEcCCCcCChhHH-HHHHHhccCchhHHhcccccccCcCCCCHHHH
Confidence 999999998764 789999999999 788887642211111000 00000 01000 000 0112334589999
Q ss_pred HHHHHHCCCCeee
Q 023384 256 AKLFFDACFSHYK 268 (283)
Q Consensus 256 ~~ll~~aGf~~~~ 268 (283)
.++|+++||++..
T Consensus 169 ~~~l~~aGf~v~~ 181 (255)
T PRK14103 169 AELLTDAGCKVDA 181 (255)
T ss_pred HHHHHhCCCeEEE
Confidence 9999999998543
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.72 E-value=2.2e-16 Score=138.66 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=109.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEeccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKLV 185 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~v 185 (283)
....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++|+.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456799999999999999999988 789999999 777765543 3589999999988 665 4999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccch-hhh-hhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH-ELT-ETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
+||++|.. +++++++++||| ||+++|.+.......... ... ......+-...........+.++|.++++++|
T Consensus 196 ~~h~~d~~--~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDKR--KFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCHH--HHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 99998864 789999999999 899999886543221110 000 00000000000000112347999999999999
Q ss_pred CCeeeEEEcC
Q 023384 264 FSHYKITPIF 273 (283)
Q Consensus 264 f~~~~~~~~~ 273 (283)
|..+++....
T Consensus 271 f~~v~~~d~s 280 (340)
T PLN02244 271 LQDIKTEDWS 280 (340)
T ss_pred CCeeEeeeCc
Confidence 9999887653
No 14
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.72 E-value=6.9e-16 Score=129.16 Aligned_cols=160 Identities=18% Similarity=0.238 Sum_probs=118.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~ 183 (283)
..+..+|||||||+|.++..+++.+| +.+++++|+ +..++.+++ ..++.++.+|+.+ +.+ .||+|++.
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 34568999999999999999999998 789999999 666665544 3578999999987 443 49999999
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccc-----cccC------------
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMS-----VNAT------------ 246 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------------ 246 (283)
.++|++++.. .+|+++.++|+| ||.+++++...+...... .........++ ...+
T Consensus 129 ~~l~~~~~~~--~~l~~~~~~L~~---gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (239)
T PRK00216 129 FGLRNVPDID--KALREMYRVLKP---GGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGKLISKNAEAYSYLAESI 200 (239)
T ss_pred cccccCCCHH--HHHHHHHHhccC---CcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHH
Confidence 9999988754 789999999999 799999987765442111 00000000000 0000
Q ss_pred CccCCHHHHHHHHHHCCCCeeeEEEcC-CcceEEEEeC
Q 023384 247 GKERTESEWAKLFFDACFSHYKITPIF-GMRFLIEIYP 283 (283)
Q Consensus 247 ~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 283 (283)
...++.++|.++++++||+.+++.... +...++.++|
T Consensus 201 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 201 RAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123578999999999999999998864 6788988876
No 15
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.72 E-value=1.8e-16 Score=128.23 Aligned_cols=146 Identities=21% Similarity=0.304 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC------CeEEEeec-hHHHhcCCC---------CCCeEEEEcCCCC-CCCC--c
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPG------IKCTVLDL-PHVVANLPE---------ADNLKYIAGDMFQ-FIPP--A 177 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~~p~--~ 177 (283)
....++||++||||..+..+++..++ .+++++|+ |+++..+++ ..++.++++|..+ |+|+ +
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 34589999999999999999999887 78999999 999876654 3569999999999 9984 9
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccc-ccccc-c-C--------
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI-VMSVN-A-T-------- 246 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~-~~~~~-~-~-------- 246 (283)
|.|.+..-+.+|++.+ +.|++++|+||| ||++.++|+..-++.....+.. ...++. ..+.. . +
T Consensus 179 D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cLeFskv~~~~l~~fy~-~ysf~VlpvlG~~iagd~~sYqYL 252 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCLEFSKVENEPLKWFYD-QYSFDVLPVLGEIIAGDRKSYQYL 252 (296)
T ss_pred eeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEEEccccccHHHHHHHH-hhhhhhhchhhHhhhhhHhhhhhH
Confidence 9999999999999976 889999999999 8999999976655322111111 111111 11110 0 0
Q ss_pred ----CccCCHHHHHHHHHHCCCCeee
Q 023384 247 ----GKERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 247 ----~~~~t~~e~~~ll~~aGf~~~~ 268 (283)
.+..+.+|++.+.++|||+.+.
T Consensus 253 veSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 253 VESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 1334789999999999999876
No 16
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.70 E-value=8.8e-16 Score=127.16 Aligned_cols=160 Identities=15% Similarity=0.146 Sum_probs=117.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCC--CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIP--PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p--~~D~v~~~~vl 186 (283)
.....+|||+|||+|..+..+++.+|. .+++++|+ +..++.+++ ..++.++.+|+.+ +.+ .||+|++..++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 345689999999999999999999987 79999999 677666543 3578999999988 544 49999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccccc--------C---------Ccc
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNA--------T---------GKE 249 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---------~~~ 249 (283)
|+.++. ..+|+++++.|+| ||++++++...+...... .........++... + ...
T Consensus 117 ~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (223)
T TIGR01934 117 RNVTDI--QKALREMYRVLKP---GGRLVILEFSKPANALLK---KFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAF 188 (223)
T ss_pred CCcccH--HHHHHHHHHHcCC---CcEEEEEEecCCCchhhH---HHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhC
Confidence 988775 4789999999999 899999887655432110 00000000000000 0 123
Q ss_pred CCHHHHHHHHHHCCCCeeeEEEcCC-cceEEEEeC
Q 023384 250 RTESEWAKLFFDACFSHYKITPIFG-MRFLIEIYP 283 (283)
Q Consensus 250 ~t~~e~~~ll~~aGf~~~~~~~~~~-~~~~i~~~~ 283 (283)
.+.++|.++|+++||+.+++.+..+ ...+++++|
T Consensus 189 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 189 PSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred CCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 4789999999999999999988865 467788775
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.69 E-value=5.4e-16 Score=142.62 Aligned_cols=148 Identities=16% Similarity=0.196 Sum_probs=113.6
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC--Cc
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP--PA 177 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p--~~ 177 (283)
+++ .+. .+...+|||||||+|..+..+++.+ +.+++++|+ +++++.+++ ..+++|+.+|+++ ++| .|
T Consensus 258 l~~-~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 258 FVD-KLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHH-hcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 444 444 4566799999999999999998876 779999999 777776643 4589999999998 665 39
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHH
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAK 257 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 257 (283)
|+|++..+++|+++.. ++|++++++|+| ||++++.+.........+.. ... +...+...++.+++.+
T Consensus 334 D~I~s~~~l~h~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~~~---~~~-----~~~~g~~~~~~~~~~~ 400 (475)
T PLN02336 334 DVIYSRDTILHIQDKP--ALFRSFFKWLKP---GGKVLISDYCRSPGTPSPEF---AEY-----IKQRGYDLHDVQAYGQ 400 (475)
T ss_pred EEEEECCcccccCCHH--HHHHHHHHHcCC---CeEEEEEEeccCCCCCcHHH---HHH-----HHhcCCCCCCHHHHHH
Confidence 9999999999998865 789999999999 79999998766543222101 111 1112345678999999
Q ss_pred HHHHCCCCeeeEEE
Q 023384 258 LFFDACFSHYKITP 271 (283)
Q Consensus 258 ll~~aGf~~~~~~~ 271 (283)
+++++||+++++..
T Consensus 401 ~l~~aGF~~i~~~d 414 (475)
T PLN02336 401 MLKDAGFDDVIAED 414 (475)
T ss_pred HHHHCCCeeeeeec
Confidence 99999999987654
No 18
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.69 E-value=5.8e-16 Score=128.53 Aligned_cols=135 Identities=18% Similarity=0.225 Sum_probs=106.1
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC-CceEEEecccccCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGL 189 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~ 189 (283)
++|||||||+|..+..+++.+|+.+++++|+ +++++.+++ .++++++.+|+.+ +.+ .||+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999999 777665553 4688999999976 555 49999999999999
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeE
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKI 269 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 269 (283)
++. ..+|++++++|+| ||.+++.+...+...... .. .......+.++|.++++++||++++.
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~-----~~--------~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLADFIANLLSAIE-----HE--------ETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEEEcccccCcccc-----cc--------ccccccCCHHHHHHHHHHCCCeEEEe
Confidence 875 4889999999999 799999887533211000 00 00112457899999999999999987
Q ss_pred EEc
Q 023384 270 TPI 272 (283)
Q Consensus 270 ~~~ 272 (283)
...
T Consensus 143 ~~~ 145 (224)
T smart00828 143 VDA 145 (224)
T ss_pred EEC
Confidence 765
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.68 E-value=9.1e-16 Score=133.47 Aligned_cols=144 Identities=15% Similarity=0.098 Sum_probs=104.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEEcCCCC-CCC-CceEEEeccccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP-------EADNLKYIAGDMFQ-FIP-PADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh 187 (283)
...+|||||||+|.++..+++..+. +++++|. +..+..++ ...++.++.+|+.+ +.+ .||+|++..+||
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4589999999999999999998766 5999998 54443211 14579999999987 654 499999999999
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
|..+.. .+|++++++|+| ||.+++-+.+.+...... ......+..+.. .-..++.+++.++|+++||+.+
T Consensus 201 H~~dp~--~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~-l~p~~~y~~~~~----~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 201 HRRSPL--DHLKQLKDQLVP---GGELVLETLVIDGDENTV-LVPGDRYAKMRN----VYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred ccCCHH--HHHHHHHHhcCC---CcEEEEEEEEecCCCccc-cCchhHHhcCcc----ceeCCCHHHHHHHHHHcCCceE
Confidence 988764 789999999999 788877666555433211 000001111000 0113589999999999999999
Q ss_pred eEEEc
Q 023384 268 KITPI 272 (283)
Q Consensus 268 ~~~~~ 272 (283)
++...
T Consensus 271 ~~~~~ 275 (322)
T PRK15068 271 RIVDV 275 (322)
T ss_pred EEEeC
Confidence 88754
No 20
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.68 E-value=1.3e-15 Score=130.22 Aligned_cols=145 Identities=19% Similarity=0.323 Sum_probs=111.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC--CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p--~~D~v~~~~ 184 (283)
+....+|||||||+|..+..+++.. +..+++++|+ +++++.+++ ..++++..+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 5667899999999999988777764 6678999999 888877764 3589999999987 665 499999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
++|++++.. +++++++++||| ||++++.+......... ....++.++....+...+.+++.++|+++||
T Consensus 155 v~~~~~d~~--~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDKE--RVFKEAFRVLKP---GGRFAISDVVLRGELPE------EIRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCHH--HHHHHHHHHcCC---CcEEEEEEeeccCCCCH------HHHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 999888754 789999999999 89999998776443211 1112222222233456689999999999999
Q ss_pred CeeeEEE
Q 023384 265 SHYKITP 271 (283)
Q Consensus 265 ~~~~~~~ 271 (283)
..+++..
T Consensus 224 ~~v~i~~ 230 (272)
T PRK11873 224 VDITIQP 230 (272)
T ss_pred CceEEEe
Confidence 9987643
No 21
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.67 E-value=6.2e-16 Score=114.11 Aligned_cols=97 Identities=26% Similarity=0.512 Sum_probs=81.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCC-CC-CC-CCceEEEecc-cc
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDM-FQ-FI-PPADAFLFKL-VF 186 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~-~~-~~-p~~D~v~~~~-vl 186 (283)
..+|||||||+|.++..+++.+|..+++++|+ |++++.+++ .+|++++.+|+ .. +. +.||+|++.. .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 47999999999999999999999999999999 888776654 68999999999 33 33 3599999999 66
Q ss_pred cCCCh-hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 187 HGLGD-EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 187 h~~~d-~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
|++.+ ++..++|+++++.|+| ||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 65543 6778999999999999 78877754
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.67 E-value=2.7e-16 Score=122.57 Aligned_cols=136 Identities=26% Similarity=0.350 Sum_probs=100.8
Q ss_pred CCCeEEEEcCCccHHHHHHH-HHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CC-CceEEEeccc
Q 023384 118 GLGSLVDVGGGNGSLSRIIS-EAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IP-PADAFLFKLV 185 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p-~~D~v~~~~v 185 (283)
...+|||+|||+|.++..++ +.+|+.+++++|+ +++++.+++ .++++|+.+|+++ + ++ .||+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 45899999999999999999 5688999999999 888887765 4589999999999 5 43 6999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhh--hcccccccccCCccCCHHHHHHHHHHCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKF--LFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
+|++++.. .+|+++++.|++ +|.+++.+....+..... ...... .-.+.+.. .+. +.++|..+|++||
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKP---GGILIISDPNHNDELPEQ-LEELMNLYSEVWSMIY--IGN--DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEEHSHHHHHH-HHHHHHHHHHHHHHCC-------CCCGHHHHHHHTT
T ss_pred hhhccCHH--HHHHHHHHHcCC---CcEEEEEECChHHHHHHH-HHHHHHHHHHHhhhhh--ccc--CHHHHHHHHHhcC
Confidence 99999875 789999999999 799888887732221110 100000 11111111 122 7889999999998
No 23
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.67 E-value=2e-15 Score=130.02 Aligned_cols=145 Identities=13% Similarity=0.069 Sum_probs=103.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC-------CCCCCeEEEEcCCCC-CC-CCceEEEecccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANL-------PEADNLKYIAGDMFQ-FI-PPADAFLFKLVF 186 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~rv~~~~~d~~~-~~-p~~D~v~~~~vl 186 (283)
....+|||||||+|.++..++...+. .++++|. +.++..+ ....++.+..+++.+ +. ..||+|++..+|
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchh
Confidence 34589999999999999999988664 7999998 5554332 114678888888876 43 359999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
||+.+.. ..|++++++|+| ||.+++.+.+.+...... ......+. .|.. .-...+.+++.++|+++||+.
T Consensus 199 ~H~~dp~--~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~-l~p~~ry~--k~~n--v~flpS~~~L~~~L~~aGF~~ 268 (314)
T TIGR00452 199 YHRKSPL--EHLKQLKHQLVI---KGELVLETLVIDGDLNTV-LVPKDRYA--KMKN--VYFIPSVSALKNWLEKVGFEN 268 (314)
T ss_pred hccCCHH--HHHHHHHHhcCC---CCEEEEEEEEecCccccc-cCchHHHH--hccc--cccCCCHHHHHHHHHHCCCeE
Confidence 9998764 789999999999 799888777665432110 00000000 0000 011348899999999999999
Q ss_pred eeEEEc
Q 023384 267 YKITPI 272 (283)
Q Consensus 267 ~~~~~~ 272 (283)
+++...
T Consensus 269 V~i~~~ 274 (314)
T TIGR00452 269 FRILDV 274 (314)
T ss_pred EEEEec
Confidence 988654
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.66 E-value=2.3e-15 Score=122.26 Aligned_cols=140 Identities=22% Similarity=0.219 Sum_probs=105.5
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC-
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP- 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p- 175 (283)
+.+++ .++ .....+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ ..++++...|+.+ +++
T Consensus 20 ~~l~~-~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (197)
T PRK11207 20 SEVLE-AVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG 94 (197)
T ss_pred HHHHH-hcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC
Confidence 34445 444 445589999999999999999986 568999999 777776653 2458888899887 555
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHH
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 255 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 255 (283)
.||+|++..++|++++++...++++++++|+| ||.+++++.+.++....+ .. ....++.+|+
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~~--------~~-------~~~~~~~~el 156 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT--------VG-------FPFAFKEGEL 156 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCCC--------CC-------CCCccCHHHH
Confidence 49999999999999988889999999999999 798877775544322110 00 0123578899
Q ss_pred HHHHHHCCCCeeeE
Q 023384 256 AKLFFDACFSHYKI 269 (283)
Q Consensus 256 ~~ll~~aGf~~~~~ 269 (283)
.++++ ||++++.
T Consensus 157 ~~~~~--~~~~~~~ 168 (197)
T PRK11207 157 RRYYE--GWEMVKY 168 (197)
T ss_pred HHHhC--CCeEEEe
Confidence 99997 8988765
No 25
>PRK06922 hypothetical protein; Provisional
Probab=99.66 E-value=1.7e-15 Score=139.36 Aligned_cols=145 Identities=19% Similarity=0.306 Sum_probs=111.5
Q ss_pred CCchhhHhhcCccHHHHHHHHhhhhhhhh--HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-h
Q 023384 75 GIKFWEFMNQNPGINQRFNEAMASDTEIL--TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-P 151 (283)
Q Consensus 75 g~~~~~~~~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~ 151 (283)
...+|+++...++....|...|....... ...... .++ +....+|||||||+|..+..+++.+|+.+++++|+ +
T Consensus 376 ~~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~-i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~ 452 (677)
T PRK06922 376 NVLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRI-ILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISE 452 (677)
T ss_pred HhHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHH-Hhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCH
Confidence 34788998888888888876665432221 111122 334 44678999999999999999999999999999999 7
Q ss_pred HHHhcCCC-----CCCeEEEEcCCCC-C--CC--CceEEEecccccCC-----------ChhHHHHHHHHHHHhhccCCC
Q 023384 152 HVVANLPE-----ADNLKYIAGDMFQ-F--IP--PADAFLFKLVFHGL-----------GDEDGLKILKKRRAAIASNGE 210 (283)
Q Consensus 152 ~~~~~a~~-----~~rv~~~~~d~~~-~--~p--~~D~v~~~~vlh~~-----------~d~~~~~iL~~~~~~L~p~~~ 210 (283)
.+++.+++ ..++.++.+|..+ + ++ .||+|+++.++|+| ++++..++|++++++|||
T Consensus 453 ~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP--- 529 (677)
T PRK06922 453 NVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP--- 529 (677)
T ss_pred HHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---
Confidence 77776653 3467889999876 4 43 49999999999986 346788999999999999
Q ss_pred CcEEEEEeeecCCCc
Q 023384 211 RGKVIIIDIVINAEE 225 (283)
Q Consensus 211 gg~lli~d~~~~~~~ 225 (283)
||++++.|.+.++..
T Consensus 530 GGrLII~D~v~~E~~ 544 (677)
T PRK06922 530 GGRIIIRDGIMTEDK 544 (677)
T ss_pred CcEEEEEeCccCCch
Confidence 899999998766543
No 26
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.66 E-value=9e-16 Score=132.77 Aligned_cols=147 Identities=15% Similarity=0.137 Sum_probs=103.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEecccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKLVF 186 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~vl 186 (283)
...+|||||||+|.++..+++ ++.+++++|. +++++.+++ ..+++++.+|+.+ +.+ .||+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 346899999999999998876 4789999999 888877653 2479999999876 543 49999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccc-ccCCccCCHHHHHHHHHHCCCC
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV-NATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
||+.|.. .+|++++++||| ||.+++.+....................+.--. ....+.++.+|+.++|+++||+
T Consensus 209 eHv~d~~--~~L~~l~r~LkP---GG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP---NGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC---CcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 9999876 789999999999 788887764322100000000000001100000 0113467999999999999999
Q ss_pred eeeEEE
Q 023384 266 HYKITP 271 (283)
Q Consensus 266 ~~~~~~ 271 (283)
++++.-
T Consensus 284 i~~~~G 289 (322)
T PLN02396 284 VKEMAG 289 (322)
T ss_pred EEEEee
Confidence 988743
No 27
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.65 E-value=1.6e-15 Score=119.11 Aligned_cols=135 Identities=18% Similarity=0.190 Sum_probs=96.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CC--CCceEEEecccccCCCh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FI--PPADAFLFKLVFHGLGD 191 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~--p~~D~v~~~~vlh~~~d 191 (283)
.....+|||||||+|.++..+++... +++++|+ +.+++. ..+.....+... +. ..||+|++..+||++++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45678999999999999999966633 9999999 777766 223333222223 22 35999999999999997
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc--cCCccCCHHHHHHHHHHCCCCeee
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN--ATGKERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~t~~e~~~ll~~aGf~~~~ 268 (283)
. ..+|+++++.||| ||.+++.++........ ....+.+... .....++.++|+++++++||++++
T Consensus 94 ~--~~~l~~l~~~Lkp---gG~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 P--EEFLKELSRLLKP---GGYLVISDPNRDDPSPR-------SFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp H--HHHHHHHHHCEEE---EEEEEEEEEBTTSHHHH-------HHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred H--HHHHHHHHHhcCC---CCEEEEEEcCCcchhhh-------HHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 4 5889999999999 78888888765431111 1111111111 234677999999999999999875
No 28
>PRK08317 hypothetical protein; Provisional
Probab=99.65 E-value=6.2e-15 Score=123.32 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=106.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC--CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP--PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p--~~D~v~~~~v 185 (283)
+....+|||+|||+|.++..+++.+ |..+++++|+ +..++.+++ ..++.+..+|+.+ +++ .||+|++.++
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech
Confidence 5667899999999999999999998 7889999999 666665543 4678999999887 554 4999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhh-hhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHEL-TETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
+|++++.. .++++++++|+| ||.+++.+.........+.. ........ .+........+..+|.++++++||
T Consensus 97 ~~~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~aGf 169 (241)
T PRK08317 97 LQHLEDPA--RALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILN--FWSDHFADPWLGRRLPGLFREAGL 169 (241)
T ss_pred hhccCCHH--HHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHH--HHHhcCCCCcHHHHHHHHHHHcCC
Confidence 99998865 779999999999 79999887532211100000 00000000 111112234456789999999999
Q ss_pred CeeeEEE
Q 023384 265 SHYKITP 271 (283)
Q Consensus 265 ~~~~~~~ 271 (283)
+.+++..
T Consensus 170 ~~~~~~~ 176 (241)
T PRK08317 170 TDIEVEP 176 (241)
T ss_pred CceeEEE
Confidence 9876643
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.64 E-value=3.5e-15 Score=126.21 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=104.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--CCC--CceEEEecc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--FIP--PADAFLFKL 184 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~~p--~~D~v~~~~ 184 (283)
+...+|||||||+|.++..+++. +.+++++|+ +++++.+++ .++++++.+|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 44579999999999999999987 578999999 888877764 3578999999866 233 499999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhh--hhhhcccc---cccccCCccCCHHHHHHHH
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTE--TKFLFDIV---MSVNATGKERTESEWAKLF 259 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~t~~e~~~ll 259 (283)
+||++++.. .+|+++.++||| ||.++++............... ......+. ..........+.+++.+++
T Consensus 121 vl~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l 195 (255)
T PRK11036 121 VLEWVADPK--SVLQTLWSVLRP---GGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWL 195 (255)
T ss_pred HHHhhCCHH--HHHHHHHHHcCC---CeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHH
Confidence 999998775 789999999999 7888876543221100000000 00000000 0000112346889999999
Q ss_pred HHCCCCeeeEEEcCC
Q 023384 260 FDACFSHYKITPIFG 274 (283)
Q Consensus 260 ~~aGf~~~~~~~~~~ 274 (283)
+++||+++++.-+..
T Consensus 196 ~~aGf~~~~~~gi~~ 210 (255)
T PRK11036 196 EEAGWQIMGKTGVRV 210 (255)
T ss_pred HHCCCeEeeeeeEEE
Confidence 999999987655433
No 30
>PRK05785 hypothetical protein; Provisional
Probab=99.63 E-value=2.1e-14 Score=119.05 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=107.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCC--CceEEEecccccCCChhH
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDED 193 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~ 193 (283)
...+|||||||+|..+..+++.+ +.+++++|+ +++++.+++. ..++.+|+.+ |++ .||+|++..+||+++|.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCHH
Confidence 46799999999999999999987 679999999 8899888653 3467889888 766 399999999999998865
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc-cCC-------------ccCCHHHHHHHH
Q 023384 194 GLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATG-------------KERTESEWAKLF 259 (283)
Q Consensus 194 ~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~t~~e~~~ll 259 (283)
+.|++++++||| . +.++|...++......+...-...-++.+.. .++ ...+.+++.+++
T Consensus 128 --~~l~e~~RvLkp---~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~ 200 (226)
T PRK05785 128 --KVIAEFTRVSRK---Q--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIF 200 (226)
T ss_pred --HHHHHHHHHhcC---c--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 779999999998 2 3455655544322110100000001111111 111 123789999999
Q ss_pred HHCCCCeeeEEEcC-CcceEEEEeC
Q 023384 260 FDACFSHYKITPIF-GMRFLIEIYP 283 (283)
Q Consensus 260 ~~aGf~~~~~~~~~-~~~~~i~~~~ 283 (283)
+++| +.++..... |..++.+++|
T Consensus 201 ~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 201 EKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHh-CceEEEEccccEEEEEEEee
Confidence 9984 667776664 5677887765
No 31
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.63 E-value=1.2e-14 Score=120.13 Aligned_cols=183 Identities=10% Similarity=0.072 Sum_probs=120.5
Q ss_pred chhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHh
Q 023384 77 KFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVA 155 (283)
Q Consensus 77 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 155 (283)
..|+.+...+.....+...|..........+++ .+........+|||||||+|.++..+++. +.+++++|+ ++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~ 91 (219)
T TIGR02021 15 QRWARIYGSGDPVSRVRQTVREGRAAMRRKLLD-WLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQ 91 (219)
T ss_pred HHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHH
Confidence 345556665555555566554444344444454 33211234689999999999999999876 568999999 88887
Q ss_pred cCCC-------CCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccch
Q 023384 156 NLPE-------ADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH 228 (283)
Q Consensus 156 ~a~~-------~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~ 228 (283)
.+++ ..++.+..+|+.+....||+|++..+++++++++...+++++.+.+++ +.++.+. +......
T Consensus 92 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~----~~~i~~~---~~~~~~~ 164 (219)
T TIGR02021 92 MARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE----RVIFTFA---PKTAWLA 164 (219)
T ss_pred HHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC----CEEEEEC---CCchHHH
Confidence 7654 248999999998733669999999999999888788899999998886 4433332 1111110
Q ss_pred hhhhhhhhccccccc---ccCCccCCHHHHHHHHHHCCCCeeeEEEcC
Q 023384 229 ELTETKFLFDIVMSV---NATGKERTESEWAKLFFDACFSHYKITPIF 273 (283)
Q Consensus 229 ~~~~~~~~~~~~~~~---~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 273 (283)
. ...+.-.... ...-..++.+++.++++++||++++.....
T Consensus 165 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 165 ---F-LKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred ---H-HHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 0 0000000000 011234589999999999999999876553
No 32
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.61 E-value=7.2e-15 Score=124.58 Aligned_cols=159 Identities=15% Similarity=0.172 Sum_probs=108.3
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIPP 176 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~ 176 (283)
..+++ .++ ++++.+|||||||.|.+++.+++++ +++++++.+ ++..+.+++ .+++++...|+.+-.+.
T Consensus 52 ~~~~~-~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 52 DLLCE-KLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHHT-TTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred HHHHH-HhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence 45566 666 7888999999999999999999998 899999999 666554432 57899999998873337
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHH
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 256 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 256 (283)
||.|++...+.|+..+....+++++.+.|+| ||++++......+............++.-. ...+|...+.+++.
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~~~~~~~~~i~ky--iFPgg~lps~~~~~ 202 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHAERRSSSDFIRKY--IFPGGYLPSLSEIL 202 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHHCTTCCCHHHHHH--TSTTS---BHHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchhhcCCCceEEEEe--eCCCCCCCCHHHHH
Confidence 9999999999999988888999999999999 799888777766543221000000111111 12467777899999
Q ss_pred HHHHHCCCCeeeEEEc
Q 023384 257 KLFFDACFSHYKITPI 272 (283)
Q Consensus 257 ~ll~~aGf~~~~~~~~ 272 (283)
..++++||++.++...
T Consensus 203 ~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 203 RAAEDAGLEVEDVENL 218 (273)
T ss_dssp HHHHHTT-EEEEEEE-
T ss_pred HHHhcCCEEEEEEEEc
Confidence 9999999998887654
No 33
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.61 E-value=3.1e-14 Score=120.72 Aligned_cols=151 Identities=13% Similarity=0.147 Sum_probs=106.2
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CC-CCceEE
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FI-PPADAF 180 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~-p~~D~v 180 (283)
..++. .++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..++.++.+|+.+ .. ..||+|
T Consensus 21 ~~ll~-~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 21 RDLLA-RVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHh-hCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 44555 554 56678999999999999999999999999999999 888887765 5678999999977 32 259999
Q ss_pred EecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhh---hhhcccccc-cc---cCCccCCHH
Q 023384 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTET---KFLFDIVMS-VN---ATGKERTES 253 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~---~~~~~~~~~-~~---~~~~~~t~~ 253 (283)
+++.++|+.+|.. ++|++++++|+| ||.+++.- ++....+..... .....+... .. ......+.+
T Consensus 98 ~~~~~l~~~~d~~--~~l~~~~~~Lkp---gG~~~~~~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 169 (258)
T PRK01683 98 FANASLQWLPDHL--ELFPRLVSLLAP---GGVLAVQM---PDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPH 169 (258)
T ss_pred EEccChhhCCCHH--HHHHHHHHhcCC---CcEEEEEC---CCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHH
Confidence 9999999888754 789999999999 78877742 222111100000 000000000 00 012335778
Q ss_pred HHHHHHHHCCCCe
Q 023384 254 EWAKLFFDACFSH 266 (283)
Q Consensus 254 e~~~ll~~aGf~~ 266 (283)
++.+++.++|+.+
T Consensus 170 ~~~~~l~~~g~~v 182 (258)
T PRK01683 170 AYYDALAPAACRV 182 (258)
T ss_pred HHHHHHHhCCCce
Confidence 9999999999864
No 34
>PRK06202 hypothetical protein; Provisional
Probab=99.59 E-value=3.9e-14 Score=118.19 Aligned_cols=149 Identities=17% Similarity=0.148 Sum_probs=100.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCC-CCC--CceEEEeccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEA----FPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQ-FIP--PADAFLFKLV 185 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p--~~D~v~~~~v 185 (283)
.+..+|||||||+|.++..+++. .|+.+++++|+ +++++.+++ ..++++...+... +.+ .||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45679999999999999888764 46679999999 888887765 3456666655443 322 4999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccC-----CccCCHHHHHHHHH
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT-----GKERTESEWAKLFF 260 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~e~~~ll~ 260 (283)
|||+++++...+|++++++++ |.+++.|...+.....- +........-..+.... -+.++.+|+.++++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLAYAL-FWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHHHHH-HHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 999999888899999999987 46666665554211100 00000000000000111 24569999999999
Q ss_pred HCCCCeeeEEEc
Q 023384 261 DACFSHYKITPI 272 (283)
Q Consensus 261 ~aGf~~~~~~~~ 272 (283)
+ ||++...++.
T Consensus 213 ~-Gf~~~~~~~~ 223 (232)
T PRK06202 213 Q-GWRVERQWPF 223 (232)
T ss_pred C-CCeEEeccce
Confidence 9 9997766543
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.59 E-value=3.4e-14 Score=115.23 Aligned_cols=133 Identities=20% Similarity=0.174 Sum_probs=99.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC-CceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP-PADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh 187 (283)
.....+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ .-++.+...|+.. +++ .||+|++..++|
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVVFM 105 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEecccc
Confidence 344579999999999999999985 578999999 777776543 2246777788765 444 499999999999
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
++++++...++++++++|+| ||.+++++....+....+ . ......+++|+.++++ +|+++
T Consensus 106 ~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~~--------~-------~~~~~~~~~el~~~f~--~~~~~ 165 (195)
T TIGR00477 106 FLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPCH--------M-------PFSFTFKEDELRQYYA--DWELL 165 (195)
T ss_pred cCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCCC--------C-------CcCccCCHHHHHHHhC--CCeEE
Confidence 99888888999999999999 799888775543221110 0 0012357899999986 58877
Q ss_pred eEE
Q 023384 268 KIT 270 (283)
Q Consensus 268 ~~~ 270 (283)
...
T Consensus 166 ~~~ 168 (195)
T TIGR00477 166 KYN 168 (195)
T ss_pred Eee
Confidence 654
No 36
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.58 E-value=5.9e-14 Score=112.02 Aligned_cols=162 Identities=12% Similarity=0.094 Sum_probs=121.9
Q ss_pred cCCCC-eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC----C--CCCeE-EEEcCCCCC---CC--------
Q 023384 116 FEGLG-SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP----E--ADNLK-YIAGDMFQF---IP-------- 175 (283)
Q Consensus 116 ~~~~~-~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~--~~rv~-~~~~d~~~~---~p-------- 175 (283)
++... +||+||+|||..+..+++.+|+++..-.|. +....... + ..++. -+..|..++ .+
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 44445 499999999999999999999999988887 33321111 1 22221 234455542 11
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc-cCCccCCHHH
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKERTESE 254 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~e 254 (283)
.||+|++.+++|..+-+.+..+++.+.++|+| ||.+++.-++..+....+ .....+|...-.. .....|+.++
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~ 175 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIED 175 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHH
Confidence 48999999999999999999999999999999 799999998877654322 2334555554443 2456789999
Q ss_pred HHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 255 WAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 255 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
+.++.+++||+..+++.+|...-+++.+|
T Consensus 176 v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 176 VEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 99999999999999999998877777775
No 37
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.58 E-value=9.4e-15 Score=104.11 Aligned_cols=88 Identities=20% Similarity=0.402 Sum_probs=75.1
Q ss_pred EEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCC-CCCC--ceEEEecccccCCChhHHH
Q 023384 123 VDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQ-FIPP--ADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 123 lDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p~--~D~v~~~~vlh~~~d~~~~ 195 (283)
||||||+|..+..+++. +..+++++|. +++++.+++ ..++.+..+|+.+ ++++ ||+|++.+++|++++ ..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--PE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH--HH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC--HH
Confidence 89999999999999999 9999999999 777777665 5667799999998 7773 999999999999944 46
Q ss_pred HHHHHHHHhhccCCCCcEEEE
Q 023384 196 KILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 196 ~iL~~~~~~L~p~~~gg~lli 216 (283)
+++++++++||| ||+++|
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 889999999999 788765
No 38
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=3.8e-14 Score=118.69 Aligned_cols=156 Identities=21% Similarity=0.263 Sum_probs=124.2
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP 175 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p 175 (283)
...+++ .+. +.++.+|||||||-|.+++..+++| +.+++++++ ++..+.+++ .++++++..|+.+..+
T Consensus 61 ~~~~~~-kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e 136 (283)
T COG2230 61 LDLILE-KLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE 136 (283)
T ss_pred HHHHHH-hcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc
Confidence 345566 666 8899999999999999999999999 999999999 666665554 5689999999987444
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHH
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 255 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 255 (283)
.||-|++...++|+..+.-...++++++.|+| ||++++.....++..... ...+..- ....+|...+.+++
T Consensus 137 ~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~~----~~~~i~~--yiFPgG~lPs~~~i 207 (283)
T COG2230 137 PFDRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFRR----FPDFIDK--YIFPGGELPSISEI 207 (283)
T ss_pred ccceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCccccc----chHHHHH--hCCCCCcCCCHHHH
Confidence 59999999999999998889999999999999 799999998877644310 0011111 11247788889999
Q ss_pred HHHHHHCCCCeeeEEEc
Q 023384 256 AKLFFDACFSHYKITPI 272 (283)
Q Consensus 256 ~~ll~~aGf~~~~~~~~ 272 (283)
.+..+++||.+.++...
T Consensus 208 ~~~~~~~~~~v~~~~~~ 224 (283)
T COG2230 208 LELASEAGFVVLDVESL 224 (283)
T ss_pred HHHHHhcCcEEehHhhh
Confidence 99999999998876544
No 39
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.57 E-value=8.1e-14 Score=116.57 Aligned_cols=135 Identities=19% Similarity=0.282 Sum_probs=102.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC-CCC--CceEEEecccccCCChh
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDE 192 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~ 192 (283)
..+|||||||+|.++..+++.+|..+++++|+ ++.+..+++ .+++.++.+|+.+ +++ .||+|++..++|+..+.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~ 114 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDL 114 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCH
Confidence 47899999999999999999999999999999 777766554 4578999999988 544 49999999999988775
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEE
Q 023384 193 DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 193 ~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 270 (283)
. ++|++++++|+| ||.+++.+......... .... ...+....+.++|.++++++ |+...+.
T Consensus 115 ~--~~l~~~~~~L~~---~G~l~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 115 S--QALSELARVLKP---GGLLAFSTFGPGTLHEL------RQSF-----GQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred H--HHHHHHHHHcCC---CcEEEEEeCCccCHHHH------HHHH-----HHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4 789999999999 78888876433221100 0000 00223456889999999998 8876653
No 40
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.54 E-value=2.3e-13 Score=117.63 Aligned_cols=98 Identities=17% Similarity=0.306 Sum_probs=78.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC--CC-Cc-----e
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF--IP-PA-----D 178 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~--~p-~~-----D 178 (283)
.+...+|||+|||+|..+..++++.+ ..+++++|+ +++++.+.+ ..++.++.+|+.+. .+ .+ .
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 34557899999999999999999987 689999999 777766543 23567789999873 33 22 3
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 179 AFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 179 ~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
++++...+|+++++++.++|++++++|+| ||.++|
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 55666899999999999999999999999 677765
No 41
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.54 E-value=2.6e-15 Score=108.28 Aligned_cols=87 Identities=28% Similarity=0.480 Sum_probs=58.0
Q ss_pred EEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC---CeEEEEcCCCCC-CC-CceEEEecccccCCC
Q 023384 123 VDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------AD---NLKYIAGDMFQF-IP-PADAFLFKLVFHGLG 190 (283)
Q Consensus 123 lDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~---rv~~~~~d~~~~-~p-~~D~v~~~~vlh~~~ 190 (283)
||||||+|.++..+++++|..+++++|+ +.+++.+++ .. ++++...|.++. .+ .||+|++..+||+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 888877776 22 334444455442 33 699999999999994
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEE
Q 023384 191 DEDGLKILKKRRAAIASNGERGKV 214 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~l 214 (283)
+ ...+|+++++.|+| ||++
T Consensus 81 ~--~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TS---S-EE
T ss_pred h--HHHHHHHHHHHcCC---CCCC
Confidence 4 45899999999999 6764
No 42
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.54 E-value=1.4e-13 Score=112.12 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=88.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCCCCC--CceEEEecccccCCCh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQFIP--PADAFLFKLVFHGLGD 191 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~~p--~~D~v~~~~vlh~~~d 191 (283)
.....+|||||||+|..+..+++..|..+++++|+ +++++.+++ ..++++..+|+.++++ .||+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 45667899999999999999999989999999999 888888876 4678899999888654 4999999999999998
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
++..++++++.++++ +.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~~-----~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCSN-----RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence 888899999999865 688888876544
No 43
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.53 E-value=3.7e-13 Score=112.09 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=100.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCCCceEEEecccccC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIPPADAFLFKLVFHG 188 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~D~v~~~~vlh~ 188 (283)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++.+..+|+......||+|++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456799999999999999999874 46999999 777776654 25899999995434346999999999999
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccc-ccc-cccCCccCCHHHHHHHHHHCCCCe
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI-VMS-VNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
+++++...+++++.+.+++ +.++... +...... ........ .-. ........+.++|.++++++||++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~---~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG----SLIFTFA---PYTPLLA---LLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC----eEEEEEC---CccHHHH---HHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 9999989999999987654 4443322 1111100 00000000 000 001234458899999999999999
Q ss_pred eeEEEcC
Q 023384 267 YKITPIF 273 (283)
Q Consensus 267 ~~~~~~~ 273 (283)
.++.+..
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 9887764
No 44
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.53 E-value=2.5e-13 Score=109.58 Aligned_cols=119 Identities=21% Similarity=0.283 Sum_probs=93.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC-CceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP-PADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-~~D~v~~~~vlh 187 (283)
.....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|...+.+ .||+|++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 55678999999999999999999999999999999 777776654 3578999999865544 499999977654
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
+ ...+++.+.+.|+| ||++++..... -+.+++.+++++.||+.+
T Consensus 109 ~-----~~~~l~~~~~~Lk~---gG~lv~~~~~~----------------------------~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 N-----LTAIIDWSLAHLHP---GGRLVLTFILL----------------------------ENLHSALAHLEKCGVSEL 152 (187)
T ss_pred C-----HHHHHHHHHHhcCC---CeEEEEEEecH----------------------------hhHHHHHHHHHHCCCCcc
Confidence 3 34678999999999 78876643211 025677889999999877
Q ss_pred eEE
Q 023384 268 KIT 270 (283)
Q Consensus 268 ~~~ 270 (283)
+++
T Consensus 153 ~~~ 155 (187)
T PRK08287 153 DCV 155 (187)
T ss_pred eEE
Confidence 653
No 45
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.53 E-value=6.8e-14 Score=110.73 Aligned_cols=167 Identities=14% Similarity=0.199 Sum_probs=119.0
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC--CCCCceEE
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ--FIPPADAF 180 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~--~~p~~D~v 180 (283)
..++. ..+ .....+|+|+|||+|..+..|++++|...++++|. +++++.|++ ..+++|..+|.-+ |-+..|++
T Consensus 20 ~dLla-~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 20 RDLLA-RVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred HHHHh-hCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 34455 555 66778999999999999999999999999999999 999998876 7889999999988 34469999
Q ss_pred EecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhc---ccccccc----cCCccCCHH
Q 023384 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLF---DIVMSVN----ATGKERTES 253 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~t~~ 253 (283)
+.+.+||.++|-- ++|.++...|.| ||.+.+.= |++..++......... -+..... ......+..
T Consensus 97 faNAvlqWlpdH~--~ll~rL~~~L~P---gg~LAVQm---PdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a 168 (257)
T COG4106 97 FANAVLQWLPDHP--ELLPRLVSQLAP---GGVLAVQM---PDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPA 168 (257)
T ss_pred hhhhhhhhccccH--HHHHHHHHhhCC---CceEEEEC---CCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHH
Confidence 9999999888864 889999999999 67665543 3333332110000000 0111111 123345889
Q ss_pred HHHHHHHHCCCCeeeEEEc------CCcceEEEEeC
Q 023384 254 EWAKLFFDACFSHYKITPI------FGMRFLIEIYP 283 (283)
Q Consensus 254 e~~~ll~~aGf~~~~~~~~------~~~~~~i~~~~ 283 (283)
.|-++|...+-+ ++++.+ ++...|++++|
T Consensus 169 ~Yy~lLa~~~~r-vDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 169 AYYELLAPLACR-VDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HHHHHhCcccce-eeeeeeeccccCCCccchhhhee
Confidence 999999888743 455433 45677887765
No 46
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.52 E-value=5.9e-13 Score=112.43 Aligned_cols=148 Identities=19% Similarity=0.211 Sum_probs=102.8
Q ss_pred hHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC--Cc
Q 023384 103 LTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP--PA 177 (283)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p--~~ 177 (283)
.+..+++ .++ .....+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ...+.++.+|+.+ +++ .|
T Consensus 30 ~a~~l~~-~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 30 SADALLA-MLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHHHH-hcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcE
Confidence 3344455 444 335679999999999999888764 578999999 888887765 3346788999987 665 49
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHH
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAK 257 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 257 (283)
|+|++..++|..++. ..+|++++++|+| ||.+++.......... + ...+..+. .........+.+++.+
T Consensus 105 D~V~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~e---l--~~~~~~~~-~~~~~~~~~~~~~l~~ 173 (251)
T PRK10258 105 DLAWSNLAVQWCGNL--STALRELYRVVRP---GGVVAFTTLVQGSLPE---L--HQAWQAVD-ERPHANRFLPPDAIEQ 173 (251)
T ss_pred EEEEECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEeCCCCchHH---H--HHHHHHhc-cCCccccCCCHHHHHH
Confidence 999999999877765 4789999999999 7888876654322111 0 00111000 0011234568899999
Q ss_pred HHHHCCCCe
Q 023384 258 LFFDACFSH 266 (283)
Q Consensus 258 ll~~aGf~~ 266 (283)
++.+.|+..
T Consensus 174 ~l~~~~~~~ 182 (251)
T PRK10258 174 ALNGWRYQH 182 (251)
T ss_pred HHHhCCcee
Confidence 999888764
No 47
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.52 E-value=6.3e-13 Score=106.46 Aligned_cols=133 Identities=17% Similarity=0.171 Sum_probs=102.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCCCceEEEecccccCCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIPPADAFLFKLVFHGLG 190 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~ 190 (283)
...+|||+|||+|.++..+++..+ +++++|+ +++++.+++ ..+++++.+|.++ ..+.||+|++...+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 447899999999999999999876 8999999 888776654 3468889999887 334699999998887665
Q ss_pred hhH-------------------HHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCC
Q 023384 191 DED-------------------GLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERT 251 (283)
Q Consensus 191 d~~-------------------~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 251 (283)
++. ..++|+++.+.|+| ||++++++.... .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~----------------------------~ 145 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN----------------------------G 145 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC----------------------------C
Confidence 421 35789999999999 799888763221 2
Q ss_pred HHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 252 ESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 252 ~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
..++.+++++.||....+....-+.--+.++|
T Consensus 146 ~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 146 EPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred hHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 56788999999999888777665555555543
No 48
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.52 E-value=3.1e-13 Score=116.19 Aligned_cols=131 Identities=21% Similarity=0.208 Sum_probs=100.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC-CceEEEecccccCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGL 189 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~ 189 (283)
...+|||||||+|..+..+++. +.+++++|. +.+++.+++ .-++++...|+.+ +++ .||+|++..+||++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4469999999999999999885 579999999 777766543 3378888889877 444 49999999999999
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeE
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKI 269 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 269 (283)
++++...+++++.++|+| ||.++++.....+....+ . .....++.+|++++++. |++++.
T Consensus 198 ~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~~--------~-------p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPCP--------M-------PFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCCC--------C-------CCCcccCHHHHHHHhCC--CEEEEE
Confidence 988889999999999999 798887765443321110 0 00123578999999964 888776
Q ss_pred E
Q 023384 270 T 270 (283)
Q Consensus 270 ~ 270 (283)
.
T Consensus 258 ~ 258 (287)
T PRK12335 258 N 258 (287)
T ss_pred e
Confidence 4
No 49
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.51 E-value=3.1e-13 Score=114.50 Aligned_cols=98 Identities=14% Similarity=0.279 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCCC---------------------------
Q 023384 118 GLGSLVDVGGGNGS----LSRIISEAFP-----GIKCTVLDL-PHVVANLPEA--------------------------- 160 (283)
Q Consensus 118 ~~~~vlDvGgG~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------- 160 (283)
...+|+|+|||+|. +++.+++.+| +.++++.|+ +.+++.|++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 44799999999997 5666666655 578999999 8888877651
Q ss_pred ------CCeEEEEcCCCC-CCC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 161 ------DNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 161 ------~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.+|+|..+|+.+ +.+ .||+|+++++||++++++..+++++++++|+| ||.+++-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 378999999998 443 49999999999999998888999999999999 78887754
No 50
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.51 E-value=2.9e-13 Score=124.60 Aligned_cols=143 Identities=13% Similarity=0.173 Sum_probs=108.7
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC---CCC-
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ---FIP- 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~---~~p- 175 (283)
..+++ .++ .....+|||||||+|.++..+++.. .+++++|+ +++++.+++ ..++.++.+|+.+ ++|
T Consensus 27 ~~il~-~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILS-LLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHh-hcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 44445 444 3455799999999999999999874 47899999 777766542 4578999999964 344
Q ss_pred -CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHH
Q 023384 176 -PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 254 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 254 (283)
.||+|++..++|++++++..++|+++++.|+| ||.+++.|.......... . .......++..+
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~~------~-------~~~~~~~~~~~~ 165 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDSK------R-------KNNPTHYREPRF 165 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCccc------c-------cCCCCeecChHH
Confidence 49999999999999998889999999999999 799999887654332110 0 001233456889
Q ss_pred HHHHHHHCCCCeee
Q 023384 255 WAKLFFDACFSHYK 268 (283)
Q Consensus 255 ~~~ll~~aGf~~~~ 268 (283)
|.+++.++||....
T Consensus 166 ~~~~f~~~~~~~~~ 179 (475)
T PLN02336 166 YTKVFKECHTRDED 179 (475)
T ss_pred HHHHHHHheeccCC
Confidence 99999999987763
No 51
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.50 E-value=4.1e-14 Score=102.46 Aligned_cols=86 Identities=19% Similarity=0.412 Sum_probs=72.5
Q ss_pred EEEEcCCccHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC--CceEEEec-ccccC
Q 023384 122 LVDVGGGNGSLSRIISEAF---PGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP--PADAFLFK-LVFHG 188 (283)
Q Consensus 122 vlDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p--~~D~v~~~-~vlh~ 188 (283)
|||+|||+|..+..+++.+ |..+++++|+ +++++.+++ ..+++++..|+.+ ++. .||+|++. .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999997 5689999999 888877765 3589999999988 533 59999995 55999
Q ss_pred CChhHHHHHHHHHHHhhcc
Q 023384 189 LGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p 207 (283)
+++++..++|+++.+.|+|
T Consensus 81 ~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP 99 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE
T ss_pred CCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999
No 52
>PRK04266 fibrillarin; Provisional
Probab=99.50 E-value=8.9e-13 Score=108.86 Aligned_cols=141 Identities=9% Similarity=0.078 Sum_probs=97.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHh----cCCCCCCeEEEEcCCCCC-----CC-CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVA----NLPEADNLKYIAGDMFQF-----IP-PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~rv~~~~~d~~~~-----~p-~~D~v~~~~ 184 (283)
+.+..+|||+|||+|.++..+++..+..+++++|+ +++++ .+++..++.++.+|..++ ++ .+|+++.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~-- 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ-- 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE--
Confidence 56778999999999999999999988778999999 76555 333346799999998753 22 4898873
Q ss_pred cccCCChh-HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 185 VFHGLGDE-DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 185 vlh~~~d~-~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
+.+++ ....+|+++++.||| ||+++|.=...+-+...+ .. +..++..++++++|
T Consensus 148 ---d~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~~~d~~~~------------------~~-~~~~~~~~~l~~aG 202 (226)
T PRK04266 148 ---DVAQPNQAEIAIDNAEFFLKD---GGYLLLAIKARSIDVTKD------------------PK-EIFKEEIRKLEEGG 202 (226)
T ss_pred ---CCCChhHHHHHHHHHHHhcCC---CcEEEEEEecccccCcCC------------------HH-HHHHHHHHHHHHcC
Confidence 34433 234568999999999 899988411111000000 00 11244469999999
Q ss_pred CCeeeEEEcCCc---ceEEEEeC
Q 023384 264 FSHYKITPIFGM---RFLIEIYP 283 (283)
Q Consensus 264 f~~~~~~~~~~~---~~~i~~~~ 283 (283)
|+.++....... +..+++++
T Consensus 203 F~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 203 FEILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred CeEEEEEcCCCCcCCeEEEEEEc
Confidence 999998877533 66666653
No 53
>PLN03075 nicotianamine synthase; Provisional
Probab=99.50 E-value=3.7e-13 Score=114.07 Aligned_cols=96 Identities=15% Similarity=0.267 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCccHHHHH--HHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCCCC---CCceEEEec
Q 023384 118 GLGSLVDVGGGNGSLSRI--ISEAFPGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQFI---PPADAFLFK 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~---p~~D~v~~~ 183 (283)
+.++|+|||||.|.++.. +++.+|+.+++++|+ +++++.|++ .++++|..+|..+.. .+||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999998855443 334689999999999 877776654 478999999998732 369999999
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
++|+|+.++-.++|+++++.|+| ||.+++-
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr 232 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAP---GALLMLR 232 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCC---CcEEEEe
Confidence 99999877778999999999999 5666553
No 54
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.49 E-value=1e-12 Score=116.97 Aligned_cols=145 Identities=14% Similarity=0.128 Sum_probs=107.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCCCCCCceEEEecccccCCCh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQFIPPADAFLFKLVFHGLGD 191 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d 191 (283)
..+..+|||||||+|.++..+++.+ +.+++++|+ +++++.+++ ...+++...|+.+....||+|++..++++.++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCCh
Confidence 5677899999999999999998876 679999999 888877664 33578888887653235999999999999988
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEE
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 271 (283)
.....++++++++|+| ||.+++.+...+...... ..+.+-. ...+|...+.+++.++++ .||.+.++..
T Consensus 244 ~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~~-----~~~i~~y--ifp~g~lps~~~i~~~~~-~~~~v~d~~~ 312 (383)
T PRK11705 244 KNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTNV-----DPWINKY--IFPNGCLPSVRQIAQASE-GLFVMEDWHN 312 (383)
T ss_pred HHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCCC-----CCCceee--ecCCCcCCCHHHHHHHHH-CCcEEEEEec
Confidence 7778899999999999 799888876544322110 1111111 123566668888888766 5898777654
Q ss_pred c
Q 023384 272 I 272 (283)
Q Consensus 272 ~ 272 (283)
.
T Consensus 313 ~ 313 (383)
T PRK11705 313 F 313 (383)
T ss_pred C
Confidence 4
No 55
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.47 E-value=6.6e-13 Score=114.65 Aligned_cols=153 Identities=15% Similarity=0.094 Sum_probs=99.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEEcCCCCCCCCceEEEeccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------ADNLKYIAGDMFQFIPPADAFLFKLV 185 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~p~~D~v~~~~v 185 (283)
...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++|..+|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 3579999999999999999986 578999999 778766654 13578888887653245999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccc-cccc-ccCCccCCHHHHHHHHHHCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI-VMSV-NATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~t~~e~~~ll~~aG 263 (283)
+||++++....+++.+.+ +.+ |+++|.. .+...... . ......+ .... .......+.++++++++++|
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~----g~liIs~--~p~~~~~~-~--l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AG 291 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAE----KRLIISF--APKTLYYD-I--LKRIGELFPGPSKATRAYLHAEADVERALKKAG 291 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcC----CEEEEEe--CCcchHHH-H--HHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCC
Confidence 999999877778888775 454 5555532 22211100 0 0000000 0000 00112347999999999999
Q ss_pred CCeeeEEEcCC---cceEEEEe
Q 023384 264 FSHYKITPIFG---MRFLIEIY 282 (283)
Q Consensus 264 f~~~~~~~~~~---~~~~i~~~ 282 (283)
|++.+..-... +..++||+
T Consensus 292 f~v~~~~~~~~~~y~~~l~~~~ 313 (315)
T PLN02585 292 WKVARREMTATQFYFSRLLEAV 313 (315)
T ss_pred CEEEEEEEeecceeHHhhhhhc
Confidence 99876544332 23455554
No 56
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.46 E-value=9.4e-14 Score=112.51 Aligned_cols=145 Identities=15% Similarity=0.097 Sum_probs=102.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CC--CCceEEEecccccC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FI--PPADAFLFKLVFHG 188 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~--p~~D~v~~~~vlh~ 188 (283)
...+|||||||.|.++..+++. +.+++++|+ ++.++.|+. .-.+++.+...++ .. ..||+|++..+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 4589999999999999999998 489999999 777887774 2334466666665 33 36999999999999
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc----cCCccCCHHHHHHHHHHCCC
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN----ATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~t~~e~~~ll~~aGf 264 (283)
.+|++ .+++.+.+.+|| ||.+++...........- .....- .+..+.- .-.+...++|...++.++|+
T Consensus 137 v~dp~--~~~~~c~~lvkP---~G~lf~STinrt~ka~~~--~i~~ae-~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDPE--SFLRACAKLVKP---GGILFLSTINRTLKAYLL--AIIGAE-YVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCHH--HHHHHHHHHcCC---CcEEEEeccccCHHHHHH--HHHHHH-HHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 99988 589999999999 687777665532211110 000000 0001111 12455688999999999999
Q ss_pred CeeeEEEc
Q 023384 265 SHYKITPI 272 (283)
Q Consensus 265 ~~~~~~~~ 272 (283)
.+.+....
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 88876543
No 57
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.45 E-value=1.2e-13 Score=112.69 Aligned_cols=140 Identities=22% Similarity=0.247 Sum_probs=104.3
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CC----CeEEEEcCCCCCCCCceEEEecccc
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--------AD----NLKYIAGDMFQFIPPADAFLFKLVF 186 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~----rv~~~~~d~~~~~p~~D~v~~~~vl 186 (283)
.+|||||||+|.++..|++. +..++++|. +.+++.|++ .. |+++...|.....+.||+|+++.++
T Consensus 91 ~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevl 168 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVL 168 (282)
T ss_pred ceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHH
Confidence 67999999999999999998 578999999 778877764 22 5777888877755569999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc-----cCCccCCHHHHHHHHHH
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-----ATGKERTESEWAKLFFD 261 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~t~~e~~~ll~~ 261 (283)
+|..|.+ .+++.+.+.|+| +|+++|......-.... ......+...... ...+..++++..++++.
T Consensus 169 eHV~dp~--~~l~~l~~~lkP---~G~lfittinrt~lS~~----~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~ 239 (282)
T KOG1270|consen 169 EHVKDPQ--EFLNCLSALLKP---NGRLFITTINRTILSFA----GTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNA 239 (282)
T ss_pred HHHhCHH--HHHHHHHHHhCC---CCceEeeehhhhHHHhh----ccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHh
Confidence 9998875 889999999999 79999887543321111 0111111111111 23456689999999999
Q ss_pred CCCCeeeEE
Q 023384 262 ACFSHYKIT 270 (283)
Q Consensus 262 aGf~~~~~~ 270 (283)
+++.+..+.
T Consensus 240 ~~~~v~~v~ 248 (282)
T KOG1270|consen 240 NGAQVNDVV 248 (282)
T ss_pred cCcchhhhh
Confidence 999877664
No 58
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.44 E-value=8.5e-12 Score=100.02 Aligned_cols=119 Identities=19% Similarity=0.159 Sum_probs=92.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC-CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP-PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p-~~D~v~~~~vl 186 (283)
++...+|||||||+|..+..++++.|+.+++++|. +++++.+++ .++++++.+|+.+ +.. .||+|++..+
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-
Confidence 34468999999999999999999999999999999 777766654 3459999999987 333 5999998652
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
. ....+++.+++.|+| ||++++++... ...++.++.++.|+.+
T Consensus 122 ---~--~~~~~l~~~~~~Lkp---GG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 122 ---A--SLSDLVELCLPLLKP---GGRFLALKGRD-----------------------------PEEEIAELPKALGGKV 164 (187)
T ss_pred ---c--CHHHHHHHHHHhcCC---CeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceE
Confidence 2 235789999999999 78888774210 2455677778889998
Q ss_pred eeEEEc
Q 023384 267 YKITPI 272 (283)
Q Consensus 267 ~~~~~~ 272 (283)
.+++..
T Consensus 165 ~~~~~~ 170 (187)
T PRK00107 165 EEVIEL 170 (187)
T ss_pred eeeEEE
Confidence 876544
No 59
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.44 E-value=7.8e-12 Score=102.47 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=99.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEEcCCCC-C---
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP------------------EADNLKYIAGDMFQ-F--- 173 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~rv~~~~~d~~~-~--- 173 (283)
....+|||+|||.|..+..|+++ +.+++++|+ +..++.+. +..+|++..+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45579999999999999999986 789999999 66666531 13578999999998 4
Q ss_pred CCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCcc-chhhhhhhhhcccccccccCCccCCH
Q 023384 174 IPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEE-EHELTETKFLFDIVMSVNATGKERTE 252 (283)
Q Consensus 174 ~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~t~ 252 (283)
.+.||+|+-+.++|+++.+...+.++++.++|+| ||.++++....+.... .+ -...+.
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~~gp------------------p~~~~~ 169 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEMAGP------------------PFSVSP 169 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCCCCc------------------CCCCCH
Confidence 2359999999999999999989999999999999 7887777665432211 11 123588
Q ss_pred HHHHHHHHHCCCCeeeEE
Q 023384 253 SEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 253 ~e~~~ll~~aGf~~~~~~ 270 (283)
+|+.+++.. +|.+..+.
T Consensus 170 ~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 170 AEVEALYGG-HYEIELLE 186 (213)
T ss_pred HHHHHHhcC-CceEEEEe
Confidence 999998864 46555443
No 60
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.43 E-value=4e-12 Score=112.09 Aligned_cols=97 Identities=25% Similarity=0.427 Sum_probs=80.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEEcCCCCCC-C-CceEEEecccc
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---------ADNLKYIAGDMFQFI-P-PADAFLFKLVF 186 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~~~-p-~~D~v~~~~vl 186 (283)
..+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ ..++++...|.++.. + .||+|+++-.+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF 308 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence 46999999999999999999999999999999 667766653 137899999998854 3 59999997655
Q ss_pred cC---CChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 187 HG---LGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 187 h~---~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
|. ++++.+.++++.++++|+| ||.++++-
T Consensus 309 h~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 309 HQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred ccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 53 5666678999999999999 79888874
No 61
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.43 E-value=2.1e-12 Score=103.22 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=88.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CC-CCceEEEecccccCC
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FI-PPADAFLFKLVFHGL 189 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~-p~~D~v~~~~vlh~~ 189 (283)
..+|||||||+|..+..++...|+.+++++|. +++++.+++ .++++++.+|+.+ +. +.||+|++.. +|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 58999999999999999999999999999999 666654432 3579999999987 33 3599998866 5432
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHH---CCCCe
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFD---ACFSH 266 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~---aGf~~ 266 (283)
..+++.+++.|+| ||.+++... . ....++..+.+. .||+.
T Consensus 122 -----~~~~~~~~~~Lkp---gG~lvi~~~---~--------------------------~~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 122 -----NVLLELTLNLLKV---GGYFLAYKG---K--------------------------KYLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred -----HHHHHHHHHhcCC---CCEEEEEcC---C--------------------------CcHHHHHHHHHhhhhcCceE
Confidence 3568888999999 788776531 0 023445555544 79998
Q ss_pred eeEEEcCCc
Q 023384 267 YKITPIFGM 275 (283)
Q Consensus 267 ~~~~~~~~~ 275 (283)
++..+..++
T Consensus 165 ~~~~~~~~~ 173 (181)
T TIGR00138 165 LEVPPLTGP 173 (181)
T ss_pred eeccccCCC
Confidence 888776543
No 62
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.41 E-value=1.6e-12 Score=104.80 Aligned_cols=144 Identities=17% Similarity=0.232 Sum_probs=110.6
Q ss_pred eEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCC-----CC--CceEEEeccc
Q 023384 121 SLVDVGGGNGSLSRIISEAFPG--IKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQF-----IP--PADAFLFKLV 185 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~-----~p--~~D~v~~~~v 185 (283)
+||+||||.|...--+++..|+ +++..+|. |..++..++ ..++.-...|+..+ .+ ..|++++..+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999999999988 99999999 888877665 34555555565542 22 3899999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCC---ccCCHHHHHHHHHHC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATG---KERTESEWAKLFFDA 262 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~~e~~~ll~~a 262 (283)
|-..+++...+.++++++.||| ||.|++-|....+-.... +. ....++.+..+...| ..++.+++.+++++|
T Consensus 154 LSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHHh-cc-CCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 9999999999999999999999 899999998776543321 11 122344444444333 346999999999999
Q ss_pred CCCeeeE
Q 023384 263 CFSHYKI 269 (283)
Q Consensus 263 Gf~~~~~ 269 (283)
||..++.
T Consensus 229 gf~~~~~ 235 (264)
T KOG2361|consen 229 GFEEVQL 235 (264)
T ss_pred ccchhcc
Confidence 9987764
No 63
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.41 E-value=5.7e-12 Score=105.19 Aligned_cols=147 Identities=15% Similarity=0.104 Sum_probs=98.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-C--C-CCceEEEecccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-F--I-PPADAFLFKLVF 186 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~--~-p~~D~v~~~~vl 186 (283)
....+|||||||+|.++..+++. ..+++++|+ +..++.+++ ..++++...|+.+ + . ..||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 34678999999999999988875 568999999 666665543 3457788887765 2 2 249999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccch-hhhhhhhhccccccc-ccCCccCCHHHHHHHHHHCCC
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH-ELTETKFLFDIVMSV-NATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~t~~e~~~ll~~aGf 264 (283)
++.++.. .+|+++.+.|+| ||.+++..... ...... ............-.. .......+.++|.++++++||
T Consensus 125 ~~~~~~~--~~l~~~~~~L~~---gG~l~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 125 EHVPDPA--SFVRACAKLVKP---GGLVFFSTLNR-NLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred hccCCHH--HHHHHHHHHcCC---CcEEEEEecCC-ChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence 9988764 789999999999 78887765321 110000 000000000000000 011345588999999999999
Q ss_pred CeeeEEE
Q 023384 265 SHYKITP 271 (283)
Q Consensus 265 ~~~~~~~ 271 (283)
++++...
T Consensus 199 ~~v~~~~ 205 (233)
T PRK05134 199 EVQDITG 205 (233)
T ss_pred eEeeeee
Confidence 9987753
No 64
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.40 E-value=1.5e-11 Score=107.75 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=80.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCC-CceEEEecccccCC--
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIP-PADAFLFKLVFHGL-- 189 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p-~~D~v~~~~vlh~~-- 189 (283)
..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .-..+++.+|.+++.+ .||+|+++-.+|+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~ 276 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQ 276 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCcc
Confidence 46899999999999999999999999999999 777776654 2345678889887544 49999999999863
Q ss_pred -ChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 190 -GDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 190 -~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
..+...++++++.+.|+| ||.++|+-.
T Consensus 277 ~~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 277 TSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred ccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 345568999999999999 799888653
No 65
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.39 E-value=6.9e-12 Score=101.75 Aligned_cols=147 Identities=11% Similarity=0.111 Sum_probs=93.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC---CCC--CceEEEecccccCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ---FIP--PADAFLFKLVFHGL 189 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p--~~D~v~~~~vlh~~ 189 (283)
.+...+|||||||+|.++..+++. ...+++++|+ ++.++.+++ .+++++.+|+.+ +++ .||+|++..++|++
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 445679999999999999888765 4667899999 777776653 467888888865 233 49999999999999
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhh-----cccccccccCCccCCHHHHHHHHHHCCC
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFL-----FDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
.+.. .+|+++.+.+++ + ++.-+................. ...........+..+.+++.++++++||
T Consensus 89 ~d~~--~~l~e~~r~~~~----~--ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 89 RNPE--EILDEMLRVGRH----A--IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred cCHH--HHHHHHHHhCCe----E--EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 8754 678888776554 2 2221110000000000000000 0000000112346789999999999999
Q ss_pred CeeeEEEc
Q 023384 265 SHYKITPI 272 (283)
Q Consensus 265 ~~~~~~~~ 272 (283)
++++....
T Consensus 161 ~v~~~~~~ 168 (194)
T TIGR02081 161 RILDRAAF 168 (194)
T ss_pred EEEEEEEe
Confidence 99887655
No 66
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.36 E-value=3.6e-12 Score=102.35 Aligned_cols=140 Identities=17% Similarity=0.248 Sum_probs=97.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCe-EEEEcCCCC--CCC-CceEEEeccccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNL-KYIAGDMFQ--FIP-PADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv-~~~~~d~~~--~~p-~~D~v~~~~vlh 187 (283)
...+.||.|+|.|..+..++..+ --++-++|. +.-++.|++ ..++ ++.+.-+.+ |.+ .||+||+.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 45799999999999999887654 235677787 777777663 2343 455554444 443 499999999999
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
|++|++.++.|++++++|+| +|.|+|=|.+....... +|- ..++--|+.+.|++++++||++++
T Consensus 134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~~---------~D~----~DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFDE---------FDE----EDSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEEE---------EET----TTTEEEEEHHHHHHHHHHCT-EEE
T ss_pred cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCcc---------cCC----ccCeeecCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999 78888888877654311 110 123456789999999999999999
Q ss_pred eEEEcCC
Q 023384 268 KITPIFG 274 (283)
Q Consensus 268 ~~~~~~~ 274 (283)
+...-.+
T Consensus 198 ~~~~Q~~ 204 (218)
T PF05891_consen 198 KEEKQKG 204 (218)
T ss_dssp EEEE-TT
T ss_pred EeccccC
Confidence 8654443
No 67
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.36 E-value=1.1e-11 Score=104.03 Aligned_cols=143 Identities=13% Similarity=0.089 Sum_probs=94.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhc---CCC----CCCeEEEEcCCCC-C-CCCceEEEeccccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVAN---LPE----ADNLKYIAGDMFQ-F-IPPADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~----~~rv~~~~~d~~~-~-~p~~D~v~~~~vlh 187 (283)
.+++|||||||+|.++..++.+.|. .++++|. +-...+ +++ ..++.+...-+.. + ...||+|++..||+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehh
Confidence 3489999999999999999999654 5899996 322211 111 2334444333333 3 23499999999999
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccC-CccCCHHHHHHHHHHCCCCe
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT-GKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~e~~~ll~~aGf~~ 266 (283)
|..++- ..|+.+++.|+| ||.+++-..+++.+.... +....++.. | .+ --..|...++.|++++||+.
T Consensus 194 Hrr~Pl--~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~-L~P~~rYa~--m---~nv~FiPs~~~L~~wl~r~gF~~ 262 (315)
T PF08003_consen 194 HRRSPL--DHLKQLKDSLRP---GGELVLETLVIDGDENTV-LVPEDRYAK--M---RNVWFIPSVAALKNWLERAGFKD 262 (315)
T ss_pred ccCCHH--HHHHHHHHhhCC---CCEEEEEEeeecCCCceE-EccCCcccC--C---CceEEeCCHHHHHHHHHHcCCce
Confidence 998875 779999999999 677666555555443221 000001100 0 00 11238999999999999999
Q ss_pred eeEEEc
Q 023384 267 YKITPI 272 (283)
Q Consensus 267 ~~~~~~ 272 (283)
+++...
T Consensus 263 v~~v~~ 268 (315)
T PF08003_consen 263 VRCVDV 268 (315)
T ss_pred EEEecC
Confidence 998764
No 68
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.36 E-value=8.2e-12 Score=99.64 Aligned_cols=139 Identities=18% Similarity=0.226 Sum_probs=93.7
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC-Cc
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP-PA 177 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p-~~ 177 (283)
.+.+ ..+ .-...++||+|||.|..+..|+++ +..++.+|. +..++.+++ .-.|+....|+.+ .++ .|
T Consensus 21 ~v~~-a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 21 EVLE-AVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHHH-HCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred HHHH-HHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 3445 444 445689999999999999999998 889999999 655655442 4458899999988 665 49
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHH
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAK 257 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 257 (283)
|+|++..+++++..+...++++++.++++| ||.++++..+. ....+. .... ...+...|+.+
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~-~~d~p~-------~~~~-------~f~~~~~EL~~ 157 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFME-TPDYPC-------PSPF-------PFLLKPGELRE 157 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB---SSS---------SS---------S--B-TTHHHH
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecc-cCCCCC-------CCCC-------CcccCHHHHHH
Confidence 999999999999999999999999999999 67766655433 221110 0000 12235677888
Q ss_pred HHHHCCCCeeeE
Q 023384 258 LFFDACFSHYKI 269 (283)
Q Consensus 258 ll~~aGf~~~~~ 269 (283)
.+. ||++++.
T Consensus 158 ~y~--dW~il~y 167 (192)
T PF03848_consen 158 YYA--DWEILKY 167 (192)
T ss_dssp HTT--TSEEEEE
T ss_pred HhC--CCeEEEE
Confidence 875 6877653
No 69
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.34 E-value=1.3e-11 Score=102.31 Aligned_cols=145 Identities=14% Similarity=0.050 Sum_probs=98.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-CeEEEEcCCCC-CC---CCceEEEecccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----AD-NLKYIAGDMFQ-FI---PPADAFLFKLVF 186 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-rv~~~~~d~~~-~~---p~~D~v~~~~vl 186 (283)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .. ++++...|+.+ +. ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 35799999999999999888864 46999999 666665543 22 58888888776 32 249999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc---cCCccCCHHHHHHHHHHCC
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN---ATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t~~e~~~ll~~aG 263 (283)
|+..+.. .+|+++++.|+| ||.+++.....+..... .........+..... ......+.+++.++++++|
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~---gG~l~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 195 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKP---GGILFFSTINRTPKSYL--LAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG 195 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCC---CcEEEEEecCCCchHHH--HHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC
Confidence 9988765 789999999999 78887765422110000 000000000000000 1123457899999999999
Q ss_pred CCeeeEEE
Q 023384 264 FSHYKITP 271 (283)
Q Consensus 264 f~~~~~~~ 271 (283)
|+++++..
T Consensus 196 ~~i~~~~~ 203 (224)
T TIGR01983 196 LRVKDVKG 203 (224)
T ss_pred Ceeeeeee
Confidence 99988754
No 70
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.33 E-value=8.6e-12 Score=98.51 Aligned_cols=133 Identities=19% Similarity=0.243 Sum_probs=97.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCCCCC--CceEEEecccccC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQFIP--PADAFLFKLVFHG 188 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~~p--~~D~v~~~~vlh~ 188 (283)
-....+++|+|||.|.++..|+.+. -+++++|+ +..++.+++ ..+|+++..|+-+..| .||+|+++-++|.
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4455799999999999999999985 47899999 888887765 5789999999988544 4999999999999
Q ss_pred CCh-hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 189 LGD-EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 189 ~~d-~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
+++ ++...+++++.++|+| ||.+++.... +.. . ...|.....+.+.++|++. |..+
T Consensus 119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~r-d~~-----------c-------~~wgh~~ga~tv~~~~~~~-~~~~ 175 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP---GGHLVFGHAR-DAN-----------C-------RRWGHAAGAETVLEMLQEH-LTEV 175 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE--HHH-----------H-------HHTT-S--HHHHHHHHHHH-SEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC---CCEEEEEEec-CCc-----------c-------cccCcccchHHHHHHHHHH-hhhe
Confidence 986 6788899999999999 7887776642 110 0 1135556788899999987 7777
Q ss_pred eEEEcC
Q 023384 268 KITPIF 273 (283)
Q Consensus 268 ~~~~~~ 273 (283)
+.+.+.
T Consensus 176 ~~~~~~ 181 (201)
T PF05401_consen 176 ERVECR 181 (201)
T ss_dssp EEEEEE
T ss_pred eEEEEc
Confidence 766653
No 71
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.33 E-value=3.8e-11 Score=98.76 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=99.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEEcCCCCC----
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP------------------EADNLKYIAGDMFQF---- 173 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~rv~~~~~d~~~~---- 173 (283)
....+|||+|||.|..+..|+++ +.+++++|+ +..++.+. ...+|++..+|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45579999999999999999986 789999999 66666431 136789999999983
Q ss_pred CCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCcc-chhhhhhhhhcccccccccCCccCCH
Q 023384 174 IPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEE-EHELTETKFLFDIVMSVNATGKERTE 252 (283)
Q Consensus 174 ~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~t~ 252 (283)
.+.||+|+-+.++|+++.+...+.++++.++|+| ||.++++....++... .| -...+.
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~~gP------------------p~~~~~ 172 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEELAGP------------------PFSVSD 172 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccCCCC------------------CCCCCH
Confidence 2358999999999999999999999999999999 7876665554432221 11 123589
Q ss_pred HHHHHHHHHCCCCeeeEEE
Q 023384 253 SEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 253 ~e~~~ll~~aGf~~~~~~~ 271 (283)
+|+++++.. +|.+..+..
T Consensus 173 ~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 173 EEVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHHhcC-CceEEEeee
Confidence 999999963 366665543
No 72
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=7.5e-11 Score=99.25 Aligned_cols=109 Identities=17% Similarity=0.287 Sum_probs=86.4
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC-C
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP-P 176 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-~ 176 (283)
+-+++ .++ .....+|+|+|||.|.+++.+++.+|+.+++.+|. ...++.+++ .++..+...|.+++.. .
T Consensus 148 ~lLl~-~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k 224 (300)
T COG2813 148 RLLLE-TLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK 224 (300)
T ss_pred HHHHH-hCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence 34455 555 34445999999999999999999999999999999 667777765 2333678889988655 5
Q ss_pred ceEEEecccccCC---ChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 177 ADAFLFKLVFHGL---GDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 177 ~D~v~~~~vlh~~---~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
||+|+++=-+|.= .+.-+.++++...+.|++ ||.+.|+-.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 9999999999842 233455899999999999 899988764
No 73
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.33 E-value=1.6e-11 Score=97.47 Aligned_cols=98 Identities=22% Similarity=0.431 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC--CceEEEecccccC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP--PADAFLFKLVFHG 188 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p--~~D~v~~~~vlh~ 188 (283)
...+|||+|||+|.++..+++.+|+.+++.+|+ +.+++.+++ .+.++++..|.+++.+ .||+|++.=.+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 558999999999999999999999999999999 777777654 2339999999999655 4999999888876
Q ss_pred CCh---hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 189 LGD---EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 189 ~~d---~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
-.+ +-..++++.+.+.|+| ||.++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 554 3467899999999999 78886644
No 74
>PTZ00146 fibrillarin; Provisional
Probab=99.32 E-value=1.2e-10 Score=98.46 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=96.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hH----HHhcCCCCCCeEEEEcCCCCC------CCCceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PH----VVANLPEADNLKYIAGDMFQF------IPPADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~rv~~~~~d~~~~------~p~~D~v~~~ 183 (283)
+....+|||+|||+|.++..+++.. |.-+++.+|+ +. +++.+++..+|.++.+|...+ .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5677899999999999999999986 4568999998 54 445554457899999998653 2348999886
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
... +| +...++.++++.||| ||.++|...........+ ..++-.+|. ++|+++|
T Consensus 210 va~---pd-q~~il~~na~r~LKp---GG~~vI~ika~~id~g~~------------------pe~~f~~ev-~~L~~~G 263 (293)
T PTZ00146 210 VAQ---PD-QARIVALNAQYFLKN---GGHFIISIKANCIDSTAK------------------PEVVFASEV-QKLKKEG 263 (293)
T ss_pred CCC---cc-hHHHHHHHHHHhccC---CCEEEEEEeccccccCCC------------------HHHHHHHHH-HHHHHcC
Confidence 631 23 344566789999999 788888321111111000 011112444 8899999
Q ss_pred CCeeeEEEcCC---cceEEEEe
Q 023384 264 FSHYKITPIFG---MRFLIEIY 282 (283)
Q Consensus 264 f~~~~~~~~~~---~~~~i~~~ 282 (283)
|+.++.+.+.. .+++++++
T Consensus 264 F~~~e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 264 LKPKEQLTLEPFERDHAVVIGV 285 (293)
T ss_pred CceEEEEecCCccCCcEEEEEE
Confidence 99999887743 46666653
No 75
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.32 E-value=3.1e-11 Score=101.85 Aligned_cols=123 Identities=20% Similarity=0.285 Sum_probs=93.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC--CceEEEeccccc-
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP--PADAFLFKLVFH- 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p--~~D~v~~~~vlh- 187 (283)
...+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++.++.+|++++++ .||+|++.-..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346899999999999999999999999999999 777776654 3479999999988553 499999853332
Q ss_pred -----CCChh------------------HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc
Q 023384 188 -----GLGDE------------------DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 244 (283)
Q Consensus 188 -----~~~d~------------------~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
.+..+ ....+++++.+.|+| ||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~~~------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLEIG------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEEEC-------------------------
Confidence 22211 124789999999999 687665210
Q ss_pred cCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 245 ATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 245 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
....+++.++++++||+.++++..
T Consensus 219 ----~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 219 ----YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred ----ccHHHHHHHHHHhCCCCceEEEeC
Confidence 013567899999999998887664
No 76
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.30 E-value=9.6e-11 Score=98.77 Aligned_cols=125 Identities=19% Similarity=0.222 Sum_probs=90.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCCCceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIPPADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~D~v~~~~vlh 187 (283)
.....+|||||||+|.+++.+++..+ .+++++|+ +.+++.+++ .+++.+..+|. .||+|+++..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~-- 188 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL-- 188 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc--
Confidence 35678999999999999988776544 46999999 778777664 13343333321 5899987532
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
.+....+++++.+.|+| ||.+++...... ..+++.+.+++.||++.
T Consensus 189 ---~~~~~~l~~~~~~~Lkp---gG~lilsgi~~~----------------------------~~~~v~~~l~~~Gf~~~ 234 (250)
T PRK00517 189 ---ANPLLELAPDLARLLKP---GGRLILSGILEE----------------------------QADEVLEAYEEAGFTLD 234 (250)
T ss_pred ---HHHHHHHHHHHHHhcCC---CcEEEEEECcHh----------------------------hHHHHHHHHHHCCCEEE
Confidence 23356789999999999 788887643210 35678899999999999
Q ss_pred eEEEcCCcceEEEEe
Q 023384 268 KITPIFGMRFLIEIY 282 (283)
Q Consensus 268 ~~~~~~~~~~~i~~~ 282 (283)
++.....+.+++..+
T Consensus 235 ~~~~~~~W~~~~~~~ 249 (250)
T PRK00517 235 EVLERGEWVALVGKK 249 (250)
T ss_pred EEEEeCCEEEEEEEe
Confidence 988888888776543
No 77
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.30 E-value=3.7e-11 Score=94.65 Aligned_cols=149 Identities=20% Similarity=0.198 Sum_probs=101.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeE-EEEcCCCC-C-CC--CceEEEecc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLK-YIAGDMFQ-F-IP--PADAFLFKL 184 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~-~~~~d~~~-~-~p--~~D~v~~~~ 184 (283)
++...||+||||||..-.. ..--|..++|.+|. +.+.+.+.+ ...+. |+.++..+ + ++ ++|+|+...
T Consensus 75 ~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 4456789999999987642 22226789999999 555443332 45566 88888877 5 44 499999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
+|- +-++.++.|+++++.|+| ||+++++|.+..+.+.-..+ .. ...+-.--....|-..|.+-| +.|++|-|
T Consensus 154 vLC--Sve~~~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~i-~q-~v~ep~~~~~~dGC~ltrd~~-e~Leda~f 225 (252)
T KOG4300|consen 154 VLC--SVEDPVKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNRI-LQ-QVAEPLWHLESDGCVLTRDTG-ELLEDAEF 225 (252)
T ss_pred EEe--ccCCHHHHHHHHHHhcCC---CcEEEEEecccccchHHHHH-HH-HHhchhhheeccceEEehhHH-HHhhhccc
Confidence 887 445567999999999999 89999999988776543211 11 111111111234555676655 67788889
Q ss_pred CeeeEEEcCC
Q 023384 265 SHYKITPIFG 274 (283)
Q Consensus 265 ~~~~~~~~~~ 274 (283)
+..+..+.+.
T Consensus 226 ~~~~~kr~~~ 235 (252)
T KOG4300|consen 226 SIDSCKRFNF 235 (252)
T ss_pred ccchhhcccC
Confidence 9988777654
No 78
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.30 E-value=3.2e-11 Score=90.28 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=74.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC--C-C-CCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ--F-I-PPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~-~-p~~D~v~~~~ 184 (283)
.....+|||+|||+|.++..+++++|..+++++|. +..++.+++ ..+++++.+|... + . +.||+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 45567999999999999999999999999999999 777766543 3578899888764 1 2 3599999976
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
..+ ...++++++++.|+| ||.+++.
T Consensus 97 ~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 97 SGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred cch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 543 335889999999999 6877653
No 79
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.29 E-value=1.4e-10 Score=99.19 Aligned_cols=135 Identities=16% Similarity=0.270 Sum_probs=98.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC--CceEEEeccccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP--PADAFLFKLVFH 187 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p--~~D~v~~~~vlh 187 (283)
....+|||+|||+|..+..+++.+|+.+++++|+ +..++.+++ ..++.++.+|++++.+ .||+|++.-...
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 4567999999999999999999999999999999 777766553 3589999999988654 599998842211
Q ss_pred ------CCCh------------------hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccc
Q 023384 188 ------GLGD------------------EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV 243 (283)
Q Consensus 188 ------~~~d------------------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
...+ +...++++++.+.|+| ||.+++ +. +
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~-----g------------------ 239 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EI-----G------------------ 239 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EE-----C------------------
Confidence 1111 1235788999999999 677666 21 0
Q ss_pred ccCCccCCHHHHHHHHHHCCCCeeeEEE-cCCcceEEEEeC
Q 023384 244 NATGKERTESEWAKLFFDACFSHYKITP-IFGMRFLIEIYP 283 (283)
Q Consensus 244 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~~ 283 (283)
....+++.+++++.||+.++++. ..+...++.+++
T Consensus 240 -----~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~~ 275 (275)
T PRK09328 240 -----YDQGEAVRALLAAAGFADVETRKDLAGRDRVVLGRR 275 (275)
T ss_pred -----chHHHHHHHHHHhCCCceeEEecCCCCCceEEEEEC
Confidence 01245688999999999777643 345556665553
No 80
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.25 E-value=2.4e-11 Score=99.10 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCC-CC-C--CC--CceEEEecc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDM-FQ-F--IP--PADAFLFKL 184 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~-~~-~--~p--~~D~v~~~~ 184 (283)
...+|||||||+|..+..+++.+|+.+++++|+ +++++.+++ ..+++++.+|+ .. + ++ .+|+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 457999999999999999999999999999999 777776653 36799999999 43 3 43 499999865
Q ss_pred cccCCC------hhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 185 VFHGLG------DEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 185 vlh~~~------d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
..+... ......+|++++++|+| ||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 442111 11235789999999999 78888754
No 81
>PRK14968 putative methyltransferase; Provisional
Probab=99.23 E-value=7.5e-10 Score=89.11 Aligned_cols=124 Identities=18% Similarity=0.257 Sum_probs=91.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCC-eEEEEcCCCCCCC--CceEEEeccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADN-LKYIAGDMFQFIP--PADAFLFKLV 185 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~r-v~~~~~d~~~~~p--~~D~v~~~~v 185 (283)
.+..+|||+|||+|.++..+++. ..+++++|+ +++++.+++ ..+ +.++.+|+.++++ .+|+|++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45578999999999999999988 688999999 777776643 222 8899999988544 4999998765
Q ss_pred ccCCC-------------------hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccC
Q 023384 186 FHGLG-------------------DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT 246 (283)
Q Consensus 186 lh~~~-------------------d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
+.... ......+++++.++|+| ||.++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~~------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSSL------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEccc-------------------------
Confidence 43211 12245689999999999 68777653110
Q ss_pred CccCCHHHHHHHHHHCCCCeeeEEEcC
Q 023384 247 GKERTESEWAKLFFDACFSHYKITPIF 273 (283)
Q Consensus 247 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 273 (283)
...+++.++++++||++..+....
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~~~~ 175 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVAEEK 175 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeeeecc
Confidence 124678899999999988775543
No 82
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.23 E-value=4.9e-10 Score=99.25 Aligned_cols=134 Identities=15% Similarity=0.209 Sum_probs=96.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC---CceEEEecccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP---PADAFLFKLVF 186 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p---~~D~v~~~~vl 186 (283)
+...+|||+|||+|.++..+++.+|+.+++++|+ +++++.+++ ..+++++.+|+++ ..+ .||+|+++-.-
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 4456999999999999999999999999999999 888877764 4589999999987 332 49999984422
Q ss_pred cCCC---------------------h--hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccc
Q 023384 187 HGLG---------------------D--EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV 243 (283)
Q Consensus 187 h~~~---------------------d--~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
..-. | +-..++++.+.+.|+| ||.+ ++|.-.
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~l-ilEiG~---------------------- 383 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFL-LLEHGF---------------------- 383 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEE-EEEECc----------------------
Confidence 1100 0 1134677777888998 5664 344311
Q ss_pred ccCCccCCHHHHHHHHHHCCCCeeeEEEc-CCcceEEEEe
Q 023384 244 NATGKERTESEWAKLFFDACFSHYKITPI-FGMRFLIEIY 282 (283)
Q Consensus 244 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~ 282 (283)
...+++++++++.||+.+++.+- .+...++.++
T Consensus 384 ------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 384 ------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred ------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 12567889999999998876554 5556666554
No 83
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.22 E-value=6.8e-11 Score=92.79 Aligned_cols=129 Identities=18% Similarity=0.167 Sum_probs=88.6
Q ss_pred EEeec-hHHHhcCCC---------CCCeEEEEcCCCC-CCC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCc
Q 023384 146 TVLDL-PHVVANLPE---------ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERG 212 (283)
Q Consensus 146 ~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg 212 (283)
+++|+ +++++.|++ ..+++++.+|..+ |++ .||+|++..++|+++|.. +.|++++++||| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~--~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL--RAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH--HHHHHHHHHcCc---Ce
Confidence 36888 788876632 2479999999988 765 399999999999998764 889999999999 89
Q ss_pred EEEEEeeecCCCccchhhhhhhhhcccccc-----ccc-C---------CccCCHHHHHHHHHHCCCCeeeEEEcC-Ccc
Q 023384 213 KVIIIDIVINAEEEEHELTETKFLFDIVMS-----VNA-T---------GKERTESEWAKLFFDACFSHYKITPIF-GMR 276 (283)
Q Consensus 213 ~lli~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~---------~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~ 276 (283)
.++|.|...++....... .......... ... . ....+.+|+.++|+++||+.++..... +..
T Consensus 76 ~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 76 RVSILDFNKSNQSVTTFM--QGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred EEEEEECCCCChHHHHHH--HHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 999999876553221100 0000000000 000 0 123488999999999999999877764 345
Q ss_pred eEEEE
Q 023384 277 FLIEI 281 (283)
Q Consensus 277 ~~i~~ 281 (283)
++..+
T Consensus 154 ~~~~~ 158 (160)
T PLN02232 154 GNLVA 158 (160)
T ss_pred HeeEe
Confidence 55554
No 84
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.21 E-value=4.3e-10 Score=93.69 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=111.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC------CCCceEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPG--IKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF------IPPADAF 180 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~------~p~~D~v 180 (283)
....+||||.||+|.+....+..+|. .++.+.|. +..++..++ .+-++|..+|.|+. .|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35579999999999999999999998 78899998 666665543 44559999999983 2458999
Q ss_pred EecccccCCChhHHHH-HHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccC-----CccCCHHH
Q 023384 181 LFKLVFHGLGDEDGLK-ILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT-----GKERTESE 254 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~-iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~e 254 (283)
+.+.++..|+|++.++ .|+.+++++.| ||.++....-. .|.. + +........-+ -+.||+.|
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPw-----HPQl-e---~IAr~LtsHr~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPW-----HPQL-E---MIARVLTSHRDGKAWVMRRRSQAE 281 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCC-----Ccch-H---HHHHHHhcccCCCceEEEecCHHH
Confidence 9999999999987555 69999999999 56655433111 1100 0 00001111111 24689999
Q ss_pred HHHHHHHCCCCeeeE-EEcCCcceEEEEeC
Q 023384 255 WAKLFFDACFSHYKI-TPIFGMRFLIEIYP 283 (283)
Q Consensus 255 ~~~ll~~aGf~~~~~-~~~~~~~~~i~~~~ 283 (283)
..+|+++|||+.++. +...|.++|-.|+|
T Consensus 282 mD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 282 MDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 999999999997764 34456788877765
No 85
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.20 E-value=6.2e-10 Score=87.30 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=79.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC---CCCceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF---IPPADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~p~~D~v~~~~v 185 (283)
..+..+++|||||||..+++++...|+.+++.+|. ++.++..++ .+++.++.||.-+. .+.+|.+++...
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg 111 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG 111 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC
Confidence 67788999999999999999999999999999998 777665543 78999999998773 446999999775
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
- ....+|+.+...|+| ||++++.-.
T Consensus 112 ~------~i~~ile~~~~~l~~---ggrlV~nai 136 (187)
T COG2242 112 G------NIEEILEAAWERLKP---GGRLVANAI 136 (187)
T ss_pred C------CHHHHHHHHHHHcCc---CCeEEEEee
Confidence 2 245889999999999 788776543
No 86
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.19 E-value=8.1e-10 Score=90.69 Aligned_cols=101 Identities=12% Similarity=0.137 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEEcCCCC-CC--
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP------------------EADNLKYIAGDMFQ-FI-- 174 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~rv~~~~~d~~~-~~-- 174 (283)
....+||+.|||.|.-+..|++. +.+++++|+ +..++.+. ...++++.++|+|+ +.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34579999999999999999997 778999999 66666531 15689999999999 42
Q ss_pred ---CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 175 ---PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 175 ---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
..||+|+-+.+|+.++++...+..+.+.+.|+| ||.++++....+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~ 167 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHD 167 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecC
Confidence 259999999999999999999999999999999 788888875443
No 87
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.19 E-value=1.1e-09 Score=94.10 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=93.8
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC--CceEEEec------
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP--PADAFLFK------ 183 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p--~~D~v~~~------ 183 (283)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ ..+++++.+|++++++ .||+|++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 777776664 3569999999998654 49999885
Q ss_pred -------ccccCCCh----------hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccC
Q 023384 184 -------LVFHGLGD----------EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT 246 (283)
Q Consensus 184 -------~vlh~~~d----------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
.++++-+. +...++++++.+.|+| ||. +++|....
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~-l~~e~g~~------------------------ 247 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGF-LVCEIGNW------------------------ 247 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCE-EEEEECcc------------------------
Confidence 23332221 2456789999999999 565 45553211
Q ss_pred CccCCHHHHHHHHH-HCCCCeeeEEEc-CCcceEEEEe
Q 023384 247 GKERTESEWAKLFF-DACFSHYKITPI-FGMRFLIEIY 282 (283)
Q Consensus 247 ~~~~t~~e~~~ll~-~aGf~~~~~~~~-~~~~~~i~~~ 282 (283)
..+.+.+++. +.||..+++++- .+...++.++
T Consensus 248 ----q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 248 ----QQKSLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred ----HHHHHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 1345667777 468887766543 4545555443
No 88
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.19 E-value=1.1e-10 Score=92.12 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=95.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC---CC--CceEEEecccccCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF---IP--PADAFLFKLVFHGL 189 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~---~p--~~D~v~~~~vlh~~ 189 (283)
.++.++|||+|||.|.++..|.+. .++++.++|+ ++.+..+- ...+.++++|+.+. +| .||.|+++++|.+.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 456799999999999999887775 7999999999 55444333 35678999999883 55 39999999999988
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhh---hhhhhccccccc-c-cCCccCCHHHHHHHHHHCCC
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELT---ETKFLFDIVMSV-N-ATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~---~~~~~~~~~~~~-~-~~~~~~t~~e~~~ll~~aGf 264 (283)
..++ ++|+++.++- .+.+|.=+.+..-..-.... .....-.+..-+ . .+-+..|..+++++.++.|+
T Consensus 89 ~~P~--~vL~EmlRVg------r~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i 160 (193)
T PF07021_consen 89 RRPD--EVLEEMLRVG------RRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGI 160 (193)
T ss_pred hHHH--HHHHHHHHhc------CeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCC
Confidence 8776 6688876653 33333222111000000000 000000011101 1 13345589999999999999
Q ss_pred CeeeEEEcCC
Q 023384 265 SHYKITPIFG 274 (283)
Q Consensus 265 ~~~~~~~~~~ 274 (283)
++.+.....+
T Consensus 161 ~I~~~~~~~~ 170 (193)
T PF07021_consen 161 RIEERVFLDG 170 (193)
T ss_pred EEEEEEEEcC
Confidence 9998776643
No 89
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.18 E-value=5e-10 Score=96.01 Aligned_cols=119 Identities=18% Similarity=0.336 Sum_probs=88.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC--CceEEEecc---
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP--PADAFLFKL--- 184 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p--~~D~v~~~~--- 184 (283)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|++++++ .||+|++.=
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 347899999999999999999999999999999 788777664 3579999999988554 499999851
Q ss_pred ----------cccCCCh----------hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc
Q 023384 185 ----------VFHGLGD----------EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 244 (283)
Q Consensus 185 ----------vlh~~~d----------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
.+++.+. +...++++.+.+.|+| ||+++ +|...
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~-~e~g~----------------------- 253 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLV-VEVGN----------------------- 253 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEE-EEECc-----------------------
Confidence 1121111 1236789999999999 67654 44211
Q ss_pred cCCccCCHHHHHHHHHHCCCCeeeE
Q 023384 245 ATGKERTESEWAKLFFDACFSHYKI 269 (283)
Q Consensus 245 ~~~~~~t~~e~~~ll~~aGf~~~~~ 269 (283)
+.+++++++.++||.....
T Consensus 254 ------~~~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 254 ------SMEALEEAYPDVPFTWLEF 272 (284)
T ss_pred ------CHHHHHHHHHhCCCceeee
Confidence 2356778888888876544
No 90
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.16 E-value=3.6e-10 Score=92.38 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=71.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC---CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP---PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p---~~D~v~~~ 183 (283)
.....+|||||||+|..+..+++..+ ..+++++|+ ++.++.+++ ..+++++.+|..+..+ .||+|++.
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 45668999999999999999998874 568999999 777766653 2468999999987332 59999999
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
..+++++ +++.+.|+| ||++++.
T Consensus 150 ~~~~~~~--------~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 150 AAASTIP--------SALVRQLKD---GGVLVIP 172 (205)
T ss_pred cCcchhh--------HHHHHhcCc---CcEEEEE
Confidence 8887554 356788999 7887663
No 91
>PHA03411 putative methyltransferase; Provisional
Probab=99.15 E-value=6.1e-10 Score=93.27 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=90.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC-CceEEEecccccCCChhHH
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGLGDEDG 194 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~~d~~~ 194 (283)
..+|||+|||+|.++..++++.+..+++++|+ +.+++.+++ ..+++++.+|+++ ..+ .||+|++.-.+++.+.++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 47999999999999999999888889999999 888887765 4578999999998 333 5999999888887654322
Q ss_pred ------------------HHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHH
Q 023384 195 ------------------LKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 256 (283)
Q Consensus 195 ------------------~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 256 (283)
.+.++.+...|+| +|.+.++ ... .+ + + ....+.+||+
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~---yss---~~-~------y---------~~sl~~~~y~ 199 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA---YSG---RP-Y------Y---------DGTMKSNKYL 199 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE---Eec---cc-c------c---------cccCCHHHHH
Confidence 3456666777787 5655444 111 00 0 0 1123689999
Q ss_pred HHHHHCCCCe
Q 023384 257 KLFFDACFSH 266 (283)
Q Consensus 257 ~ll~~aGf~~ 266 (283)
++|+++||..
T Consensus 200 ~~l~~~g~~~ 209 (279)
T PHA03411 200 KWSKQTGLVT 209 (279)
T ss_pred HHHHhcCcEe
Confidence 9999999853
No 92
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.15 E-value=7.8e-10 Score=95.71 Aligned_cols=94 Identities=19% Similarity=0.362 Sum_probs=73.8
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC--CceEEEecc-----
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP--PADAFLFKL----- 184 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p--~~D~v~~~~----- 184 (283)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++.++ .||+|++.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888877664 3579999999988554 499999851
Q ss_pred --------cccCCCh----------hHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 185 --------VFHGLGD----------EDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 185 --------vlh~~~d----------~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.+++.+. +....+++++.+.|+| ||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 1122111 2246889999999999 676654
No 93
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.14 E-value=9.6e-10 Score=89.43 Aligned_cols=93 Identities=22% Similarity=0.291 Sum_probs=73.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--C-C-CCceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--F-I-PPADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~-~-p~~D~v~~ 182 (283)
.....+|||+|||+|.++..+++.. +..+++++|+ ++.++.+++ .+++.++.+|+.+ + . +.||+|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 5667899999999999999998864 6689999999 878776543 3678999999876 2 2 35999998
Q ss_pred cccccCCChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 183 KLVFHGLGDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 183 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.. ...+...+++.+.+.|+| ||++++
T Consensus 118 ~~-----~~~~~~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 118 GG-----GSEKLKEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CC-----CcccHHHHHHHHHHHcCC---CcEEEE
Confidence 53 223346789999999999 788765
No 94
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.14 E-value=1.6e-10 Score=93.62 Aligned_cols=97 Identities=13% Similarity=0.219 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C---CC--CceEEEecc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F---IP--PADAFLFKL 184 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~---~p--~~D~v~~~~ 184 (283)
...+|||||||+|.++..+++++|+..++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .+|.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 447999999999999999999999999999999 777766543 3589999999975 2 33 388888765
Q ss_pred cccCCChhH-------HHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 185 VFHGLGDED-------GLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 185 vlh~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
..+ |+... ...+++.++++|+| ||.+++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 433 22211 14689999999999 78887754
No 95
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.13 E-value=5.9e-10 Score=91.57 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=75.9
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC-CC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF-IP 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~-~p 175 (283)
..+++ .++ .....+|||||||+|..+..+++.. ++.+++++|+ +++++.+++ ..+++++.+|.... .+
T Consensus 66 ~~~~~-~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 66 AIMCE-LLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHH-HcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 34445 454 6677899999999999999888875 4579999999 888776664 35799999999873 22
Q ss_pred --CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 176 --PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 176 --~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.||+|++...+++. .+.+.+.|+| ||++++.
T Consensus 143 ~~~fD~I~~~~~~~~~--------~~~l~~~Lkp---gG~lvi~ 175 (212)
T PRK13942 143 NAPYDRIYVTAAGPDI--------PKPLIEQLKD---GGIMVIP 175 (212)
T ss_pred CCCcCEEEECCCcccc--------hHHHHHhhCC---CcEEEEE
Confidence 49999998776543 3456678999 7888774
No 96
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.11 E-value=2.5e-10 Score=97.55 Aligned_cols=90 Identities=17% Similarity=0.260 Sum_probs=72.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCC---eEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC--CceEEEecccccCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGI---KCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGL 189 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~ 189 (283)
...+|||||||+|.++..+++.+|.. +++++|+ +.+++.+++ ..++.+..+|..+ |++ .||+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 44789999999999999999988753 6899999 888887765 5678999999888 765 4999987543
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
. ..+++++++|+| ||.++++.+
T Consensus 161 -~----~~~~e~~rvLkp---gG~li~~~p 182 (272)
T PRK11088 161 -P----CKAEELARVVKP---GGIVITVTP 182 (272)
T ss_pred -C----CCHHHHHhhccC---CCEEEEEeC
Confidence 1 236789999999 799888753
No 97
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.11 E-value=1.6e-09 Score=92.51 Aligned_cols=128 Identities=16% Similarity=0.122 Sum_probs=88.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCCCceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIPPADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~v~~~~vl 186 (283)
.....+|||||||||.++++.++.. ..+++++|+ |..++.+++ .+++.+. ...+ ....||+|+.+-
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI-- 233 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANI-- 233 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES--
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECC--
Confidence 4556899999999999999877763 347999999 777777664 4566553 1111 123599998743
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
-.+-...++..+.+.|+| ||.+++.-. +.+ ..+++.+.+++ ||++
T Consensus 234 ---~~~vL~~l~~~~~~~l~~---~G~lIlSGI-l~~---------------------------~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 234 ---LADVLLELAPDIASLLKP---GGYLILSGI-LEE---------------------------QEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp ----HHHHHHHHHHCHHHEEE---EEEEEEEEE-EGG---------------------------GHHHHHHHHHT-TEEE
T ss_pred ---CHHHHHHHHHHHHHhhCC---CCEEEEccc-cHH---------------------------HHHHHHHHHHC-CCEE
Confidence 234567888889999999 566655432 221 24677788877 9999
Q ss_pred eeEEEcCCcceEEEEeC
Q 023384 267 YKITPIFGMRFLIEIYP 283 (283)
Q Consensus 267 ~~~~~~~~~~~~i~~~~ 283 (283)
.+......+.+++--+|
T Consensus 279 ~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 279 VEEREEGEWVALVFKKK 295 (295)
T ss_dssp EEEEEETTEEEEEEEE-
T ss_pred EEEEEECCEEEEEEEeC
Confidence 99888888888765544
No 98
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.11 E-value=1.5e-09 Score=89.09 Aligned_cols=132 Identities=19% Similarity=0.224 Sum_probs=99.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC---C---------------CCCeEEEEcCCCC-CCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP---E---------------ADNLKYIAGDMFQ-FIP 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---------------~~rv~~~~~d~~~-~~p 175 (283)
.....+||..|||.|.-+..|+++ +.+++++|+ +..++.+. . .++|++.++|||+ +..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 455679999999999999999987 679999999 66665541 0 4678999999999 322
Q ss_pred ---CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCcc-chhhhhhhhhcccccccccCCccCC
Q 023384 176 ---PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEE-EHELTETKFLFDIVMSVNATGKERT 251 (283)
Q Consensus 176 ---~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~t 251 (283)
.||+|+=+.+|+.++++...+..+.+.+.|+| ||+++++....+.... +||+ ..+
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~GPPf------------------~v~ 171 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEMEGPPF------------------SVT 171 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSSSSS----------------------
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCCCcCC------------------CCC
Confidence 49999999999999999999999999999999 7886665554433221 2211 236
Q ss_pred HHHHHHHHHHCCCCeeeEEE
Q 023384 252 ESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 252 ~~e~~~ll~~aGf~~~~~~~ 271 (283)
.+|+++++. .+|++..+..
T Consensus 172 ~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 172 EEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHHhc-CCcEEEEEec
Confidence 899999998 7888776643
No 99
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.10 E-value=1.5e-09 Score=93.30 Aligned_cols=120 Identities=19% Similarity=0.177 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC-CceEEEeccccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP-PADAFLFKLVFH 187 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p-~~D~v~~~~vlh 187 (283)
....+|||+|||+|.+++.+++. +..+++++|+ +.+++.+++ ..++.+..++.....+ .||+|++....
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence 35589999999999999887764 4568999999 777776654 3466677666433223 59999986433
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
+....+++++++.|+| ||.+++..... ...+++.+.+++. |+++
T Consensus 236 ----~~l~~ll~~~~~~Lkp---gG~li~sgi~~----------------------------~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 236 ----EVIKELYPQFSRLVKP---GGWLILSGILE----------------------------TQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred ----HHHHHHHHHHHHHcCC---CcEEEEEeCcH----------------------------hHHHHHHHHHHcc-Ccee
Confidence 2346789999999999 78887755321 1245677777766 8887
Q ss_pred eEEEcCC
Q 023384 268 KITPIFG 274 (283)
Q Consensus 268 ~~~~~~~ 274 (283)
++.....
T Consensus 280 ~~~~~~~ 286 (288)
T TIGR00406 280 EIRQREE 286 (288)
T ss_pred eEeccCC
Confidence 7765544
No 100
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.10 E-value=1.3e-09 Score=90.02 Aligned_cols=136 Identities=15% Similarity=0.289 Sum_probs=102.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-C--CC--CceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-F--IP--PADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~--~p--~~D~v~~ 182 (283)
.+...+|||+|||+|..+..++++.+..+++++++ ++..+.|++ .+|+++++.|+.. . .+ .||+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34478999999999999999999999999999999 666666654 7899999999987 2 22 3899999
Q ss_pred cccccCCChh----------------HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccC
Q 023384 183 KLVFHGLGDE----------------DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT 246 (283)
Q Consensus 183 ~~vlh~~~d~----------------~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
+=-.+.-.+. ....+++.+.+.||| ||++.++-..
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r~-------------------------- 172 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHRP-------------------------- 172 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEecH--------------------------
Confidence 7665544333 246788999999999 7888775410
Q ss_pred CccCCHHHHHHHHHHCCCCeeeEEEc---CC---cceEEEEeC
Q 023384 247 GKERTESEWAKLFFDACFSHYKITPI---FG---MRFLIEIYP 283 (283)
Q Consensus 247 ~~~~t~~e~~~ll~~aGf~~~~~~~~---~~---~~~~i~~~~ 283 (283)
-...|+.+++++.+|...++..+ .+ ..-+|+++|
T Consensus 173 ---erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k 212 (248)
T COG4123 173 ---ERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIK 212 (248)
T ss_pred ---HHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEec
Confidence 02567888999988888776554 22 345666664
No 101
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.09 E-value=9.2e-10 Score=90.73 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=75.6
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCC--
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFI-- 174 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~-- 174 (283)
..+++ .++ .....+|||||||+|..+..+++..+ +.+++++|+ ++.++.+++ .++++++.+|..+..
T Consensus 67 ~~~~~-~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 67 AMMTE-LLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHH-HhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 34444 444 56778999999999999999999865 577999998 888877654 357999999998732
Q ss_pred -CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 175 -PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 175 -p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
..||+|++....++ +.+.+.+.|+| ||++++.
T Consensus 144 ~~~fD~Ii~~~~~~~--------~~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPK--------IPEALIDQLKE---GGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCccc--------ccHHHHHhcCc---CcEEEEE
Confidence 25999998765543 34567788999 7887764
No 102
>PRK04457 spermidine synthase; Provisional
Probab=99.09 E-value=5.7e-10 Score=94.51 Aligned_cols=97 Identities=23% Similarity=0.384 Sum_probs=76.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC---CCC-CceEEEecc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ---FIP-PADAFLFKL 184 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~---~~p-~~D~v~~~~ 184 (283)
+...+|||||||+|.++..+++.+|+.+++++|+ |++++.+++ .+|++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4557999999999999999999999999999999 888887664 3789999999865 233 599998753
Q ss_pred cccC--CChh-HHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 185 VFHG--LGDE-DGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 185 vlh~--~~d~-~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
++. .+.. ....+++++++.|+| ||.+++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 221 1111 136899999999999 6777764
No 103
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.09 E-value=2.4e-09 Score=98.74 Aligned_cols=131 Identities=16% Similarity=0.294 Sum_probs=93.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC--CceEEEecc----
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP--PADAFLFKL---- 184 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p--~~D~v~~~~---- 184 (283)
..+|||+|||+|.+++.+++.+|+.+++++|+ +.+++.+++ .+++.++.+|+++.++ .||+|++.-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 778777664 3589999999988543 499999832
Q ss_pred ----------cccCCC------h----hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc
Q 023384 185 ----------VFHGLG------D----EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 244 (283)
Q Consensus 185 ----------vlh~~~------d----~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
++.+.+ . +...++++++.+.|+| ||.+++ |...
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l-Eig~----------------------- 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL-EIGF----------------------- 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE-EECC-----------------------
Confidence 111111 0 1235678888999999 676654 4211
Q ss_pred cCCccCCHHHHHHHHHHCCCCeeeEEE-cCCcceEEEE
Q 023384 245 ATGKERTESEWAKLFFDACFSHYKITP-IFGMRFLIEI 281 (283)
Q Consensus 245 ~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~ 281 (283)
...+.+.+++.+.||..+++.. ..+...++.+
T Consensus 272 -----~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 272 -----KQEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred -----chHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 0245678889999998877655 3454444443
No 104
>PRK14967 putative methyltransferase; Provisional
Probab=99.07 E-value=5.7e-09 Score=86.53 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=74.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCC--CceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIP--PADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p--~~D~v~~~~vlh 187 (283)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..++.++.+|+.+.++ .||+|++.-..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 445679999999999999998876 3458999999 777765543 3468899999987443 599999864322
Q ss_pred CCCh-------------------hHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 188 GLGD-------------------EDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 188 ~~~d-------------------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.-+. .....+++++.+.|+| ||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence 1111 1235688999999999 79988765443
No 105
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.06 E-value=2.4e-09 Score=87.66 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=73.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEEcCCCCC---------CC--CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDLPHVVANLPEADNLKYIAGDMFQF---------IP--PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~---------~p--~~D~v~~~ 183 (283)
++...+|||||||+|.++..+++.. +..+++++|+.++. ...++.++.+|+.++ .+ .+|+|++.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 4566799999999999999999986 45799999995432 234689999999883 32 49999997
Q ss_pred ccccCCChhH---------HHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 184 LVFHGLGDED---------GLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 184 ~vlh~~~d~~---------~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
...|...+.. ...+|+.+++.|+| ||.+++..
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~ 165 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKV 165 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEE
Confidence 7665543321 24689999999999 78887754
No 106
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.05 E-value=2.9e-09 Score=93.80 Aligned_cols=148 Identities=11% Similarity=0.104 Sum_probs=94.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC---CCC--CceEEEecc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ---FIP--PADAFLFKL 184 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p--~~D~v~~~~ 184 (283)
.....+||||||+|.++..+++++|+..++++|+ +.+++.+.+ ..++.++.+|... .++ .+|.|++..
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 3456899999999999999999999999999999 667655543 4689999999843 344 489998754
Q ss_pred cccCCChhH-----HHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHH
Q 023384 185 VFHGLGDED-----GLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLF 259 (283)
Q Consensus 185 vlh~~~d~~-----~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 259 (283)
.. -|+... ...+|+.++++|+| ||.+.+.....+-.... .........+......+...+-..++++-.
T Consensus 201 Pd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~TD~~~y~~~~--~e~~~~~~~~~~~~~~~~~~~i~TkyE~r~ 274 (390)
T PRK14121 201 PV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELRTDSELYFEFS--LELFLKLPKAKIEIKKNAQLEVSSKYEDRW 274 (390)
T ss_pred CC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEEEECHHHHHHH--HHHHHhCCCceeecccCCCCCCCCHHHHHH
Confidence 32 232211 24789999999999 78887755322111000 000000000111011111223346788888
Q ss_pred HHCCCCeeeEE
Q 023384 260 FDACFSHYKIT 270 (283)
Q Consensus 260 ~~aGf~~~~~~ 270 (283)
.+.|-.+.++.
T Consensus 275 ~~~G~~Iy~l~ 285 (390)
T PRK14121 275 KKQNKDIYDLR 285 (390)
T ss_pred HHCCCCEEEEE
Confidence 88898776654
No 107
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.05 E-value=1.4e-09 Score=77.86 Aligned_cols=92 Identities=25% Similarity=0.414 Sum_probs=75.1
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------CCCCeEEEEcCCCCCC----CCceEEEecccccCC
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP------EADNLKYIAGDMFQFI----PPADAFLFKLVFHGL 189 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~rv~~~~~d~~~~~----p~~D~v~~~~vlh~~ 189 (283)
+|+|+|||.|..+..+++ .+..+++++|+ +..+..++ ...++++..+|+.+.. +++|++++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67889999999 66655444 1568899999998832 249999999999875
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.+....+++++.+.|+| ||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 55667899999999999 6877664
No 108
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.05 E-value=2.3e-09 Score=87.07 Aligned_cols=95 Identities=18% Similarity=0.251 Sum_probs=73.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC---CC-CCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ---FI-PPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~-p~~D~v~~~~ 184 (283)
.....+|||+|||+|.++..+++..|..+++++|+ +++++.+++ ..+++++.+|..+ .. +.+|.+++..
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 55678999999999999999998889999999999 888776654 3578999998865 22 2367665421
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
......+++++.+.|+| ||++++...
T Consensus 118 ------~~~~~~~l~~~~~~Lkp---gG~li~~~~ 143 (196)
T PRK07402 118 ------GRPIKEILQAVWQYLKP---GGRLVATAS 143 (196)
T ss_pred ------CcCHHHHHHHHHHhcCC---CeEEEEEee
Confidence 22346889999999999 788877764
No 109
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.03 E-value=7e-10 Score=82.24 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=74.9
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-C--CC--CceEEEecccc
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-F--IP--PADAFLFKLVF 186 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~--~p--~~D~v~~~~vl 186 (283)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .++++++.+|+++ . .+ .||+|++.-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 889999999 777766553 4789999999988 3 43 49999998777
Q ss_pred cCCCh------hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 187 HGLGD------EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 187 h~~~d------~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+.... +....+++++.+.|+| ||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 64321 2346889999999999 78777653
No 110
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.03 E-value=9.6e-10 Score=85.07 Aligned_cols=122 Identities=18% Similarity=0.176 Sum_probs=91.3
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC-C-C-CceEEEecccccC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF-I-P-PADAFLFKLVFHG 188 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~-~-p-~~D~v~~~~vlh~ 188 (283)
.+|||+|||.|+++..|++.--..+.+++|. +..++.|+. .+.|+|.+.|+++| + + +||+|+=...+..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 4999999999999999999865556789998 666665543 45599999999995 2 3 4999876655443
Q ss_pred C------ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHC
Q 023384 189 L------GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDA 262 (283)
Q Consensus 189 ~------~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 262 (283)
. .+......+..+.+.|+| ||.++|... -+|.+|+.+.++.-
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSC-----------------------------N~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSC-----------------------------NFTKDELVEEFENF 196 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCC---CcEEEEEec-----------------------------CccHHHHHHHHhcC
Confidence 2 222334457888899999 677777442 13789999999999
Q ss_pred CCCeeeEEEcC
Q 023384 263 CFSHYKITPIF 273 (283)
Q Consensus 263 Gf~~~~~~~~~ 273 (283)
||+....+|.+
T Consensus 197 ~f~~~~tvp~p 207 (227)
T KOG1271|consen 197 NFEYLSTVPTP 207 (227)
T ss_pred CeEEEEeeccc
Confidence 99988877765
No 111
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=1.3e-09 Score=88.19 Aligned_cols=151 Identities=13% Similarity=0.164 Sum_probs=97.0
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------------------
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------------------------- 159 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------------- 159 (283)
..++ .+...+-....+|||||.+|.++..+++.|-...+.++|+ +..+..|++
T Consensus 47 ~rLk-~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
T KOG2899|consen 47 PRLK-VLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG 125 (288)
T ss_pred hhhh-hccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence 3344 4433355668999999999999999999998889999999 666655542
Q ss_pred -----------------------CCCeEEEEcCCCC-CCCCceEEEec----ccccCCChhHHHHHHHHHHHhhccCCCC
Q 023384 160 -----------------------ADNLKYIAGDMFQ-FIPPADAFLFK----LVFHGLGDEDGLKILKKRRAAIASNGER 211 (283)
Q Consensus 160 -----------------------~~rv~~~~~d~~~-~~p~~D~v~~~----~vlh~~~d~~~~~iL~~~~~~L~p~~~g 211 (283)
..+..+..-||.+ ..|.||+|++- +|=-+|.|+-..++++++++.|.|
T Consensus 126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---- 201 (288)
T KOG2899|consen 126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---- 201 (288)
T ss_pred cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc----
Confidence 1122233334554 34569999774 444479999999999999999999
Q ss_pred cEEEEEeeecCCCccchhhhhhhhhc-ccccccccCCccCCHHHHHHHHHHC--CCCeee
Q 023384 212 GKVIIIDIVINAEEEEHELTETKFLF-DIVMSVNATGKERTESEWAKLFFDA--CFSHYK 268 (283)
Q Consensus 212 g~lli~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~t~~e~~~ll~~a--Gf~~~~ 268 (283)
|.++|+|+---+.-. ...... -+.+ ..-.-...++.+..++.+. ||+-++
T Consensus 202 gGiLvvEPQpWksY~-----kaar~~e~~~~--ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 202 GGILVVEPQPWKSYK-----KAARRSEKLAA--NYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred CcEEEEcCCchHHHH-----HHHHHHHHhhc--CccceecCHHHHHhhhhhhhhheeeec
Confidence 556777743211110 000000 0000 0012234789999999887 565543
No 112
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=7.5e-09 Score=87.76 Aligned_cols=133 Identities=14% Similarity=0.205 Sum_probs=91.7
Q ss_pred hhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeE----EEEcCCCC-CCC-CceEE
Q 023384 111 ECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLK----YIAGDMFQ-FIP-PADAF 180 (283)
Q Consensus 111 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~----~~~~d~~~-~~p-~~D~v 180 (283)
.++....+..+|||+|||+|.++++.++.. ..+++++|+ |..++.+++ ...|. ....+..+ +.. .||+|
T Consensus 155 ~Le~~~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvI 233 (300)
T COG2264 155 ALEKLLKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVI 233 (300)
T ss_pred HHHHhhcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEE
Confidence 333334577999999999999999888763 447999999 777777765 23333 22233333 222 59998
Q ss_pred EecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHH
Q 023384 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFF 260 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 260 (283)
+.+= | .+ -.+++...+.+.++| ||.+++.- ++.+ ..+.+.+.++
T Consensus 234 VANI-L---A~-vl~~La~~~~~~lkp---gg~lIlSG-Il~~---------------------------q~~~V~~a~~ 277 (300)
T COG2264 234 VANI-L---AE-VLVELAPDIKRLLKP---GGRLILSG-ILED---------------------------QAESVAEAYE 277 (300)
T ss_pred Eehh-h---HH-HHHHHHHHHHHHcCC---CceEEEEe-ehHh---------------------------HHHHHHHHHH
Confidence 8743 3 22 356888999999999 67766544 2211 2567788999
Q ss_pred HCCCCeeeEEEcCCcceEEE
Q 023384 261 DACFSHYKITPIFGMRFLIE 280 (283)
Q Consensus 261 ~aGf~~~~~~~~~~~~~~i~ 280 (283)
++||++.++.....+.+++-
T Consensus 278 ~~gf~v~~~~~~~eW~~i~~ 297 (300)
T COG2264 278 QAGFEVVEVLEREEWVAIVG 297 (300)
T ss_pred hCCCeEeEEEecCCEEEEEE
Confidence 99999999888877776653
No 113
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.1e-08 Score=87.27 Aligned_cols=129 Identities=20% Similarity=0.291 Sum_probs=92.1
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C-CCeEEEEcCCCCCCC-CceEEEecc--ccc---
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----A-DNLKYIAGDMFQFIP-PADAFLFKL--VFH--- 187 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~rv~~~~~d~~~~~p-~~D~v~~~~--vlh--- 187 (283)
+|||||||+|..++.+++++|++++++.|+ |..++.|++ . .++.++.+|.|++++ .||+|+++= +=.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 799999999999999999999999999999 888877764 2 667778889999766 599998732 111
Q ss_pred CCC------------------hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCcc
Q 023384 188 GLG------------------DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKE 249 (283)
Q Consensus 188 ~~~------------------d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
+.. -+-..+++..+.+.|+| |.+++++.-..
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~----~g~l~le~g~~--------------------------- 241 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP----GGVLILEIGLT--------------------------- 241 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC----CcEEEEEECCC---------------------------
Confidence 010 12346778888889998 55566553221
Q ss_pred CCHHHHHHHHHHCC-CCeeeEEEc-CCcceEEEE
Q 023384 250 RTESEWAKLFFDAC-FSHYKITPI-FGMRFLIEI 281 (283)
Q Consensus 250 ~t~~e~~~ll~~aG-f~~~~~~~~-~~~~~~i~~ 281 (283)
..+++++++.+.| |..+.+.+- .+...++.+
T Consensus 242 -q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~ 274 (280)
T COG2890 242 -QGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA 274 (280)
T ss_pred -cHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence 2567889999999 665555544 334444443
No 114
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.99 E-value=1.3e-08 Score=85.78 Aligned_cols=120 Identities=16% Similarity=0.174 Sum_probs=86.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCCCC-----CCceEEEeccccc--
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQFI-----PPADAFLFKLVFH-- 187 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~~~-----p~~D~v~~~~vlh-- 187 (283)
..+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++++.+|+++.. ..||+|++.-...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 888877765 233688999998743 2499999853221
Q ss_pred ----CCChh------------------HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccccc
Q 023384 188 ----GLGDE------------------DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNA 245 (283)
Q Consensus 188 ----~~~d~------------------~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
..+++ -..++++.+.+.|+| ||++++.- ..
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~~-~~------------------------ 218 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVET-SE------------------------ 218 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEE-Cc------------------------
Confidence 11111 134788888899999 67766432 11
Q ss_pred CCccCCHHHHHHHHHHCCCCeeeEE
Q 023384 246 TGKERTESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 246 ~~~~~t~~e~~~ll~~aGf~~~~~~ 270 (283)
...+++.+++++.||+..-+.
T Consensus 219 ----~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 219 ----RQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred ----chHHHHHHHHHHCCCCceeeE
Confidence 024567888999999765443
No 115
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.91 E-value=6.5e-08 Score=77.25 Aligned_cols=177 Identities=13% Similarity=0.158 Sum_probs=102.8
Q ss_pred hhhhHHHhhccCCcchhHHhhCCchhhHhhcCccHHHHHHHHhhhh----hhhhHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 023384 54 PYQSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASD----TEILTSFVVKAECKQIFEGLGSLVDVGGGN 129 (283)
Q Consensus 54 ~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~----~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~ 129 (283)
-++.|-|.+-+.. + .+-++.+.++|+....|+.+.+.. -....+.+++ .+. ..+....|.|+|||.
T Consensus 14 rFR~lNE~LYT~~-s-------~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~-~l~-~~~~~~viaD~GCGd 83 (219)
T PF05148_consen 14 RFRWLNEQLYTTS-S-------EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIE-WLK-KRPKSLVIADFGCGD 83 (219)
T ss_dssp HHHHHHHHHHHS--H-------HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHH-HHC-TS-TTS-EEEES-TT
T ss_pred chHHHHHhHhcCC-H-------HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHH-HHH-hcCCCEEEEECCCch
Confidence 3556666665443 1 123355667777766666655532 2223455555 333 134456899999999
Q ss_pred cHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCC-CCCC--ceEEEecccccCCChhHHHHHHHHHHHhhc
Q 023384 130 GSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQ-FIPP--ADAFLFKLVFHGLGDEDGLKILKKRRAAIA 206 (283)
Q Consensus 130 G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~ 206 (283)
+.++..+.+ ..++.-+|+-.. .++ ++..|+-. |+++ .|+++++..|-. -+....|+++.|+||
T Consensus 84 A~la~~~~~---~~~V~SfDLva~------n~~--Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK 149 (219)
T PF05148_consen 84 AKLAKAVPN---KHKVHSFDLVAP------NPR--VTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLK 149 (219)
T ss_dssp -HHHHH--S------EEEEESS-S------STT--EEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEE
T ss_pred HHHHHhccc---CceEEEeeccCC------CCC--EEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheec
Confidence 999966432 357888998321 123 56788977 8764 899999887742 235688999999999
Q ss_pred cCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 207 SNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 207 p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
| ||.+.|.|... +.-+.+++.+.+++.||+....-..+....+++.+|
T Consensus 150 ~---~G~L~IAEV~S--------------------------Rf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 150 P---GGILKIAEVKS--------------------------RFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp E---EEEEEEEEEGG--------------------------G-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred c---CcEEEEEEecc--------------------------cCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 9 79999988422 111568899999999999887544455566666654
No 116
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.91 E-value=1.7e-08 Score=82.94 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=68.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC---CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP---PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p---~~D~v~~~~v 185 (283)
..+..+|||||||+|..+..+++.. .+++++|. ++.++.+++ ..++++..+|..+..+ .||+|++...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 5667899999999999998777775 37899998 777766653 3469999999877432 4999999876
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
++++ .+.+.+.|+| ||++++.-
T Consensus 154 ~~~~--------~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 154 APEI--------PRALLEQLKE---GGILVAPV 175 (212)
T ss_pred chhh--------hHHHHHhcCC---CcEEEEEE
Confidence 6543 4567789999 78877643
No 117
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.90 E-value=1.9e-08 Score=88.29 Aligned_cols=120 Identities=16% Similarity=0.053 Sum_probs=86.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC--CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP--PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p--~~D~v~~~~v 185 (283)
+.+..+|||+|||+|.++++.+.. ..+++++|+ +.++..++. ...+.+..+|+.+ +.+ .+|+|++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 566789999999999999886653 678999999 777765543 2347899999998 654 4999998532
Q ss_pred cc-------CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHH
Q 023384 186 FH-------GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKL 258 (283)
Q Consensus 186 lh-------~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 258 (283)
.. +...+...++|+.+++.|+| ||+++++-+ + ..++.++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~---~----------------------------~~~~~~~ 303 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVP---T----------------------------RIDLESL 303 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEc---C----------------------------CCCHHHH
Confidence 21 11123346899999999999 788877542 1 1134578
Q ss_pred HHHCCCCeeeEEEc
Q 023384 259 FFDACFSHYKITPI 272 (283)
Q Consensus 259 l~~aGf~~~~~~~~ 272 (283)
++++|| +...+..
T Consensus 304 ~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 304 AEDAFR-VVKRFEV 316 (329)
T ss_pred HhhcCc-chheeee
Confidence 999999 7766554
No 118
>PRK00811 spermidine synthase; Provisional
Probab=98.89 E-value=8.2e-09 Score=88.48 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEEcCCCC--CC--CCceEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------ADNLKYIAGDMFQ--FI--PPADAF 180 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~--~~--p~~D~v 180 (283)
++..+||+||||+|..+..+++..+..+++++|+ +++++.+++ .+|++++.+|..+ .. ..||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4568999999999999999997655668999999 888877664 4689999999876 21 249999
Q ss_pred EecccccCCChhH--HHHHHHHHHHhhccCCCCcEEEE
Q 023384 181 LFKLVFHGLGDED--GLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 181 ~~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gg~lli 216 (283)
++...-+..+... ...+++.+++.|+| ||.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~ 189 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVA 189 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 9865433222221 35778999999999 676654
No 119
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.89 E-value=1.2e-08 Score=82.29 Aligned_cols=95 Identities=15% Similarity=0.223 Sum_probs=70.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEEcCCCC-C--------CC--CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDLPHVVANLPEADNLKYIAGDMFQ-F--------IP--PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~--------~p--~~D~v~~~ 183 (283)
.....+|||+|||+|.++..+++++ +..+++++|+.+.. ...++.++.+|+.+ + .+ .+|+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4667899999999999999999887 56789999994432 23568889999876 2 23 49999985
Q ss_pred cccc---CCCh------hHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 184 LVFH---GLGD------EDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 184 ~vlh---~~~d------~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
...| .|.- +...++|+++++.|+| ||++++.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 4322 1211 2235789999999999 7887774
No 120
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.86 E-value=2.4e-08 Score=83.19 Aligned_cols=141 Identities=23% Similarity=0.353 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCc---cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCC--eEEEEcCCCCC---C--C---C-ce
Q 023384 118 GLGSLVDVGGGN---GSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADN--LKYIAGDMFQF---I--P---P-AD 178 (283)
Q Consensus 118 ~~~~vlDvGgG~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~r--v~~~~~d~~~~---~--p---~-~D 178 (283)
+...+||||||- |+.-....+..|+.+++.+|. |-++..++. .++ ..++.+|+.++ + | . .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 678999999993 344444455689999999999 777877764 344 89999999984 1 1 1 23
Q ss_pred -----EEEecccccCCCh-hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCH
Q 023384 179 -----AFLFKLVFHGLGD-EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTE 252 (283)
Q Consensus 179 -----~v~~~~vlh~~~d-~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 252 (283)
.+++..+||+.+| ++...+++.++++|.| |+.|.|..... +..... .................||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~-d~~p~~----~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATD-DGAPER----AEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB--TTSHHH----HHHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCC-CCCHHH----HHHHHHHHHcCCCCceecCH
Confidence 7899999999988 7789999999999999 66666655544 322211 01112222222345678999
Q ss_pred HHHHHHHHHCCCCeee
Q 023384 253 SEWAKLFFDACFSHYK 268 (283)
Q Consensus 253 ~e~~~ll~~aGf~~~~ 268 (283)
+|+.++|. ||+.++
T Consensus 220 ~ei~~~f~--g~elve 233 (267)
T PF04672_consen 220 EEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHHCCT--TSEE-T
T ss_pred HHHHHHcC--CCccCC
Confidence 99999996 888765
No 121
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.81 E-value=9.5e-08 Score=81.46 Aligned_cols=96 Identities=14% Similarity=0.164 Sum_probs=75.5
Q ss_pred CCeEEEEcCCccHH--HHH--HHHHCC----CCeEEEeec-hHHHhcCCC------------------------------
Q 023384 119 LGSLVDVGGGNGSL--SRI--ISEAFP----GIKCTVLDL-PHVVANLPE------------------------------ 159 (283)
Q Consensus 119 ~~~vlDvGgG~G~~--~~~--l~~~~p----~~~~~~~D~-~~~~~~a~~------------------------------ 159 (283)
.-+|...||+||.- +++ +.+..+ +.++++.|+ +.+++.|++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 46999999999973 333 334332 467999999 777766542
Q ss_pred -------CCCeEEEEcCCCC-CCC---CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 160 -------ADNLKYIAGDMFQ-FIP---PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 160 -------~~rv~~~~~d~~~-~~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
..+|.|..+|..+ +.| .||+|++.++|.+++++...+++++++++|+| ||.+++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence 2567899999998 443 49999999999999999999999999999999 6766553
No 122
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.81 E-value=6.7e-08 Score=83.58 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=75.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC----CCeEEEeec-hHHHhcCCC------CCCeEE--EEcCCCCC---CC----
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP----GIKCTVLDL-PHVVANLPE------ADNLKY--IAGDMFQF---IP---- 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~------~~rv~~--~~~d~~~~---~p---- 175 (283)
+.....|+|+|||+|.-...|+++.. ..+++.+|+ .+.++.+.+ ...+++ +.+||.+. ++
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 44556899999999998887777663 467999999 556554432 244555 78898662 21
Q ss_pred --CceE-EEecccccCCChhHHHHHHHHHHH-hhccCCCCcEEEE-EeeecC
Q 023384 176 --PADA-FLFKLVFHGLGDEDGLKILKKRRA-AIASNGERGKVII-IDIVIN 222 (283)
Q Consensus 176 --~~D~-v~~~~vlh~~~d~~~~~iL~~~~~-~L~p~~~gg~lli-~d~~~~ 222 (283)
...+ +++.+.+.+++++++..+|+++++ .|+| |+.++| +|...+
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLiG~D~~k~ 202 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLIGLDGCKD 202 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEEecCCCCC
Confidence 1344 466779999999999999999999 9999 566665 565433
No 123
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=7.1e-08 Score=79.20 Aligned_cols=103 Identities=18% Similarity=0.299 Sum_probs=84.7
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHH-HCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC-CC
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISE-AFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF-IP 175 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~-~p 175 (283)
.|+. ... .....+|+|.|-|+|.++..|+. ..|.-+++.+|+ ++..+.|.+ .+++.+..+|+.+. .+
T Consensus 85 ~I~~-~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 85 YIVA-RLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHH-HcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 3444 444 78889999999999999999997 568899999999 777777664 67799999999983 34
Q ss_pred -CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 176 -PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.+|++++ |++++. +.+.+++++|+| ||.+.+.-+..
T Consensus 162 ~~vDav~L-----Dmp~PW--~~le~~~~~Lkp---gg~~~~y~P~v 198 (256)
T COG2519 162 EDVDAVFL-----DLPDPW--NVLEHVSDALKP---GGVVVVYSPTV 198 (256)
T ss_pred cccCEEEE-----cCCChH--HHHHHHHHHhCC---CcEEEEEcCCH
Confidence 5999998 778876 779999999999 78888876554
No 124
>PLN02366 spermidine synthase
Probab=98.80 E-value=3.1e-08 Score=85.48 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC---CC-C-CceEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ---FI-P-PADAF 180 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~-p-~~D~v 180 (283)
++.++||+||||.|..+.++++..+..+++++|+ +.+++.+++ .+|++++.+|..+ .. + .||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 5668999999999999999986633457999999 777776654 3699999999754 23 2 49999
Q ss_pred EecccccCCChh--HHHHHHHHHHHhhccCCCCcEEEE
Q 023384 181 LFKLVFHGLGDE--DGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 181 ~~~~vlh~~~d~--~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
++...-+.-+.. -...+++.++++|+| ||.+++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 985433322211 135789999999999 677654
No 125
>PRK01581 speE spermidine synthase; Validated
Probab=98.78 E-value=3.5e-08 Score=85.95 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=73.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEEcCCCCC---CC-Cc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------------ADNLKYIAGDMFQF---IP-PA 177 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~---~p-~~ 177 (283)
..+..+||+||||+|..+.++++..+..+++++|+ +++++.|++ .+|++++.+|..+- .+ .|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 35568999999999999999998656678999999 888876662 47999999998872 22 49
Q ss_pred eEEEeccccc---CCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 178 DAFLFKLVFH---GLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 178 D~v~~~~vlh---~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
|+|++...-. ....-....+++.++++|+| ||.+++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9999863210 01112235789999999999 6776554
No 126
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.77 E-value=3.5e-08 Score=84.15 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC--C--CCCceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ--F--IPPADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~--~--~p~~D~v~ 181 (283)
++..+||+||||+|..+..+++..+..+++++|+ +++++.+++ ..+++++.+|.++ . ...||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999988766778999999 777766553 3678888888765 1 22599999
Q ss_pred ecccccCCChhH--HHHHHHHHHHhhccCCCCcEEEEE
Q 023384 182 FKLVFHGLGDED--GLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 182 ~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
+....+.-+... ....++++++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 866533222222 45788999999999 6777664
No 127
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.77 E-value=7e-08 Score=83.78 Aligned_cols=92 Identities=14% Similarity=0.275 Sum_probs=70.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCC---CCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFI---PPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~---p~~D~v~~~~ 184 (283)
.+...+|||||||+|.++..+++..+. .+++++|+ +++++.+++ .+++.++.+|..+.. ..||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 556689999999999999999998764 57899999 777766553 457999999987632 2499999976
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.+++. ...+.+.|+| ||++++..
T Consensus 158 g~~~i--------p~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 158 GVDEV--------PETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred chHHh--------HHHHHHhcCC---CCEEEEEe
Confidence 55433 3346678999 78877743
No 128
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.77 E-value=7e-08 Score=80.44 Aligned_cols=98 Identities=14% Similarity=0.165 Sum_probs=75.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---------CCCc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---------IPPA 177 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---------~p~~ 177 (283)
..+.++|||||||+|..+..+++..| +.+++.+|+ ++.++.+++ .++++++.+|..+- .+.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45678999999999999999998865 689999999 777776654 57899999999762 1259
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
|+|++- -..+.-..++..+.+.|+| || ++++|.++-
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~---GG-~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKV---GG-IIAFDNTLW 181 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCC---Ce-EEEEEcCCc
Confidence 999883 2334556889999999999 45 566665543
No 129
>PRK03612 spermidine synthase; Provisional
Probab=98.76 E-value=1e-07 Score=88.55 Aligned_cols=97 Identities=16% Similarity=0.309 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCeEEEEcCCCCC---CC-Cc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE-------------ADNLKYIAGDMFQF---IP-PA 177 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~---~p-~~ 177 (283)
++.++|||||||+|..+.++++ +|. .+++++|+ +++++.+++ .+|++++.+|..+- .+ .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4568999999999999999987 565 79999999 888887654 26899999998772 23 59
Q ss_pred eEEEecccccCCChh---HHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 178 DAFLFKLVFHGLGDE---DGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 178 D~v~~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
|+|++...-...+.. -..++++++++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 999986433221111 124688999999999 6776554
No 130
>PLN02672 methionine S-methyltransferase
Probab=98.75 E-value=9.5e-08 Score=94.03 Aligned_cols=121 Identities=21% Similarity=0.257 Sum_probs=86.6
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------------CCCeEEEEcCCCCCCC-
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------------------ADNLKYIAGDMFQFIP- 175 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~rv~~~~~d~~~~~p- 175 (283)
.+|||||||+|..++.+++++|+.+++++|+ +.+++.|++ .+|++|+.+|+++..+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~ 199 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD 199 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence 5899999999999999999999999999999 777765532 2479999999998543
Q ss_pred ---CceEEEeccc--c--------------------cCC----------Chh----HHHHHHHHHHHhhccCCCCcEEEE
Q 023384 176 ---PADAFLFKLV--F--------------------HGL----------GDE----DGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 176 ---~~D~v~~~~v--l--------------------h~~----------~d~----~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.||+|+.+=. . |.. .++ -..++++.+.+.|+| ||. ++
T Consensus 200 ~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~p---gG~-l~ 275 (1082)
T PLN02672 200 NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKP---MGI-MI 275 (1082)
T ss_pred cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccC---CCE-EE
Confidence 4899887421 1 100 001 125677777788898 554 44
Q ss_pred EeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHH-HHHHHCCCCeeeEEEc
Q 023384 217 IDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA-KLFFDACFSHYKITPI 272 (283)
Q Consensus 217 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~-~ll~~aGf~~~~~~~~ 272 (283)
+|.-. ...+.+. +++++.||+.++++..
T Consensus 276 lEiG~----------------------------~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 276 FNMGG----------------------------RPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred EEECc----------------------------cHHHHHHHHHHHHCCCCeeEEeee
Confidence 55321 1234667 6899999999888765
No 131
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.74 E-value=1.1e-07 Score=78.47 Aligned_cols=143 Identities=18% Similarity=0.178 Sum_probs=89.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCC-CceEEEecccccCCChhHHH
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIP-PADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p-~~D~v~~~~vlh~~~d~~~~ 195 (283)
...++||||.|.|..+..++..|.+ +++.+. +.+....++ ...+++..|-....+ .||+|.+.++|-...++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~-- 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPL-- 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCHH--
Confidence 3468999999999999999998876 566666 455444432 344444443333222 599999999998777764
Q ss_pred HHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhh--hccc-cccccc-CCccCCHHHHHHHHHHCCCCeeeEEE
Q 023384 196 KILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKF--LFDI-VMSVNA-TGKERTESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 196 ~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~--~~~~-~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~ 271 (283)
.+|+.++++|+| +|++++. .++|-.. +.+... ...- ..+-.. ...|-..+.+.+.|+.+||++....+
T Consensus 169 ~LL~~i~~~l~p---~G~lilA-vVlP~~p----yVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 169 TLLRDIRRALKP---NGRLILA-VVLPFRP----YVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHHHhCC---CCEEEEE-EEecccc----cEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 889999999999 5766553 3333211 000000 0000 001011 11222334455889999999999877
Q ss_pred cC
Q 023384 272 IF 273 (283)
Q Consensus 272 ~~ 273 (283)
.|
T Consensus 241 ~P 242 (265)
T PF05219_consen 241 LP 242 (265)
T ss_pred cC
Confidence 65
No 132
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.73 E-value=2.8e-07 Score=77.63 Aligned_cols=98 Identities=13% Similarity=0.192 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCC----------------------------
Q 023384 118 GLGSLVDVGGGNGS----LSRIISEAFP-----GIKCTVLDL-PHVVANLPE---------------------------- 159 (283)
Q Consensus 118 ~~~~vlDvGgG~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~---------------------------- 159 (283)
+.-+|.-.||+||. .++.+.+.+| ..++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36799999999997 4555666675 478899999 778877652
Q ss_pred -------CCCeEEEEcCCCC-C-CCC-ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 160 -------ADNLKYIAGDMFQ-F-IPP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 160 -------~~rv~~~~~d~~~-~-~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
...|.|..+|..+ + .++ ||+|+|++||=.++.+.-.+++++++..|+| ||.+++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEcc
Confidence 2568999999998 4 444 9999999999999999999999999999999 67777743
No 133
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.73 E-value=2.6e-08 Score=80.36 Aligned_cols=97 Identities=12% Similarity=0.199 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCccHH--HHH--HHHHC----C-CCeEEEeec-hHHHhcCCC----------------------------
Q 023384 118 GLGSLVDVGGGNGSL--SRI--ISEAF----P-GIKCTVLDL-PHVVANLPE---------------------------- 159 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~--~~~--l~~~~----p-~~~~~~~D~-~~~~~~a~~---------------------------- 159 (283)
..-+|...||++|.- +++ +.+.. + ..++++.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 457899999999973 333 33311 2 467899999 778877652
Q ss_pred ------CCCeEEEEcCCCC-CCC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 160 ------ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 160 ------~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
..+|+|...|..+ +.+ .+|+|+|++||-.++++...+++++++++|+| ||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 3789999999999 322 49999999999999999999999999999999 6766663
No 134
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.71 E-value=8.7e-08 Score=75.91 Aligned_cols=77 Identities=25% Similarity=0.485 Sum_probs=59.2
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCCC--c
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIPP--A 177 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~--~ 177 (283)
.+++ .++ ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+. +
T Consensus 4 ~i~~-~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 4 KIVR-AAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHH-hcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 3445 444 566679999999999999999988 578999999 667666543 4589999999998 6553 8
Q ss_pred eEEEeccccc
Q 023384 178 DAFLFKLVFH 187 (283)
Q Consensus 178 D~v~~~~vlh 187 (283)
|.|+..-..|
T Consensus 79 d~vi~n~Py~ 88 (169)
T smart00650 79 YKVVGNLPYN 88 (169)
T ss_pred CEEEECCCcc
Confidence 8887765544
No 135
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.71 E-value=4e-08 Score=79.66 Aligned_cols=97 Identities=20% Similarity=0.299 Sum_probs=70.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEE-------EcCCCCCC--C-CceEEEeccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYI-------AGDMFQFI--P-PADAFLFKLV 185 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~-------~~d~~~~~--p-~~D~v~~~~v 185 (283)
++...++|||||+|..++.++..|. ++++.|. +.+++.+++..+++.. ..++.+-. + +.|+|++..+
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3445899999999988888888765 5799999 8889988874443321 11222201 2 3899999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
+|.++-+ ++.+.++++||+ + ||.+++....
T Consensus 110 ~HWFdle---~fy~~~~rvLRk-~-Gg~iavW~Y~ 139 (261)
T KOG3010|consen 110 VHWFDLE---RFYKEAYRVLRK-D-GGLIAVWNYN 139 (261)
T ss_pred HHhhchH---HHHHHHHHHcCC-C-CCEEEEEEcc
Confidence 9977665 788999999998 3 5666665543
No 136
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.70 E-value=1.1e-07 Score=77.37 Aligned_cols=98 Identities=22% Similarity=0.307 Sum_probs=77.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--C-------CCCc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--F-------IPPA 177 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~-------~p~~ 177 (283)
..+.++||+||+++|..+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+ + ..+|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 34568999999999999999999987 589999999 777776654 5799999999876 2 1259
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
|+|++-. ...+-...++.+.+.|+| |.++|+|.++.
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~----ggvii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRP----GGVIIADNVLW 158 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEE----EEEEEEETTTG
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccC----CeEEEEccccc
Confidence 9999944 455667889999999999 77788886654
No 137
>PHA03412 putative methyltransferase; Provisional
Probab=98.70 E-value=1e-07 Score=78.25 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=71.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC-CceEEEecccccCCCh
Q 023384 119 LGSLVDVGGGNGSLSRIISEAF---PGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGLGD 191 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~~d 191 (283)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.+++ ..++.++.+|+.. +.. .||+|+++=-.+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 4678999999 888888876 4578999999987 444 5999999766553221
Q ss_pred ----------hHHHHHHHHHHHhhccCCCCcEE
Q 023384 192 ----------EDGLKILKKRRAAIASNGERGKV 214 (283)
Q Consensus 192 ----------~~~~~iL~~~~~~L~p~~~gg~l 214 (283)
.-...+++++.+.+++ |.+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ----GTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC----CEE
Confidence 1134588888887776 665
No 138
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.67 E-value=1.4e-06 Score=71.44 Aligned_cols=157 Identities=16% Similarity=0.188 Sum_probs=103.9
Q ss_pred hhHhhcCccHHHHHHHHhhhhh----hhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHH
Q 023384 79 WEFMNQNPGINQRFNEAMASDT----EILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVV 154 (283)
Q Consensus 79 ~~~~~~~~~~~~~f~~~m~~~~----~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~ 154 (283)
++.+.++|.....|+.+.+... ..-.+.+++ .+. .-+....|-|+|||.+.++. --..++.-+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~-~ik-~r~~~~vIaD~GCGEakiA~-----~~~~kV~SfDL~a-- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIR-KIK-RRPKNIVIADFGCGEAKIAS-----SERHKVHSFDLVA-- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHH-HHH-hCcCceEEEecccchhhhhh-----ccccceeeeeeec--
Confidence 3455667776666666555322 122344555 443 13566789999999999886 1233577788732
Q ss_pred hcCCCCCCeEEEEcCCCC-CCC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhh
Q 023384 155 ANLPEADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELT 231 (283)
Q Consensus 155 ~~a~~~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~ 231 (283)
.+-.++..|+.. |++ +.|+++++..|-. .+....+++++++|+| ||.+.|.|.-.
T Consensus 210 ------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~---gG~l~IAEv~S---------- 267 (325)
T KOG3045|consen 210 ------VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKP---GGLLYIAEVKS---------- 267 (325)
T ss_pred ------CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhcc---CceEEEEehhh----------
Confidence 233457788888 766 3899888776642 2356889999999999 89999988321
Q ss_pred hhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEe
Q 023384 232 ETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIY 282 (283)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 282 (283)
+.-+..++.+.|...||...+..-.+....+++..
T Consensus 268 ----------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefk 302 (325)
T KOG3045|consen 268 ----------------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFK 302 (325)
T ss_pred ----------------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEe
Confidence 12245568899999999887765555566666654
No 139
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.66 E-value=2.4e-07 Score=84.15 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=76.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-C--C-C-CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-F--I-P-PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~--~-p-~~D~v~~~~ 184 (283)
.....+|||+|||+|..+..+++..++.+++++|+ +..+..+++ .-+++++.+|..+ + . + .||.|++.-
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45668999999999999999999998889999999 777766654 3357899999986 2 2 2 499998522
Q ss_pred ------ccc-------CCChhH-------HHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 185 ------VFH-------GLGDED-------GLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 185 ------vlh-------~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
++. ....++ ..++|+++.+.|+| ||++++....+
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 375 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSI 375 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 111 112222 24789999999999 79988777544
No 140
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.65 E-value=3.6e-07 Score=76.15 Aligned_cols=102 Identities=17% Similarity=0.253 Sum_probs=76.2
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CC--
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FI-- 174 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~-- 174 (283)
++. .++ ..++.+|||-|.|+|.++..|++. .|.-+++-+|. .+..+.|++ .++|++...|+.+ -+
T Consensus 32 I~~-~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 32 ILM-RLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHH-HTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHH-HcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 444 455 788899999999999999999975 68999999999 666666654 5789999999965 33
Q ss_pred ---CCceEEEecccccCCChhHHHHHHHHHHHhh-ccCCCCcEEEEEeeec
Q 023384 175 ---PPADAFLFKLVFHGLGDEDGLKILKKRRAAI-ASNGERGKVIIIDIVI 221 (283)
Q Consensus 175 ---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L-~p~~~gg~lli~d~~~ 221 (283)
..+|.|++ |++++. ..+..+.++| +| ||++.+.-+.+
T Consensus 109 ~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~---gG~i~~fsP~i 149 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDPW--EAIPHAKRALKKP---GGRICCFSPCI 149 (247)
T ss_dssp T-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EE---EEEEEEEESSH
T ss_pred cccCcccEEEE-----eCCCHH--HHHHHHHHHHhcC---CceEEEECCCH
Confidence 24899988 778876 6699999999 88 78888876544
No 141
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.65 E-value=1.9e-07 Score=84.88 Aligned_cols=105 Identities=18% Similarity=0.178 Sum_probs=77.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C--CCeEEEEcCCCC-CC----CCceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----A--DNLKYIAGDMFQ-FI----PPADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~--~rv~~~~~d~~~-~~----p~~D~v~~ 182 (283)
.....+|||+|||+|..+..+++..++.+++++|+ ++.++.+++ + .++.+..+|... +. ..||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 55668999999999999999999988889999999 777766553 1 134447777765 22 24999986
Q ss_pred c------ccccCCCh-------hH-------HHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 183 K------LVFHGLGD-------ED-------GLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 183 ~------~vlh~~~d-------~~-------~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
. .+++..++ ++ -.++|+++.+.||| ||++++....+..
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~ 373 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLP 373 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence 2 35655443 11 25799999999999 7999888766643
No 142
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.62 E-value=3.5e-07 Score=79.76 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------CCCeEEEEcCCCCC-----C-
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------------ADNLKYIAGDMFQF-----I- 174 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~rv~~~~~d~~~~-----~- 174 (283)
...+|||+|||.|.-+.-...+. -..++++|+ ...+++|++ .-...|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 56899999999999888887763 346899999 666766653 12346788888862 1
Q ss_pred -C--CceEEEecccccC-C-ChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 175 -P--PADAFLFKLVFHG-L-GDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 175 -p--~~D~v~~~~vlh~-~-~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+ .||+|-+...||. | +.+.+..+|+++.+.|+| ||.++..-
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEe
Confidence 2 4999999999997 3 456677799999999999 67665544
No 143
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.61 E-value=1.6e-07 Score=76.61 Aligned_cols=99 Identities=13% Similarity=0.271 Sum_probs=71.1
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC--
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP-- 175 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-- 175 (283)
.+++ .++ +....+|||||||+|..+..++... +.-+++.+|. +...+.|++ ..+|.++.+|.....+
T Consensus 63 ~~l~-~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 63 RMLE-ALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHH-HTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHH-HHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 4455 555 7788999999999999999998875 4457899998 777777765 4589999999887443
Q ss_pred -CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 176 -PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.||.|++.......+. .+.+-|++ ||++++--
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~pi 172 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAPI 172 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEEE
Confidence 4999999887754332 35567899 78887743
No 144
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.60 E-value=4.4e-07 Score=82.95 Aligned_cols=103 Identities=21% Similarity=0.234 Sum_probs=75.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CC-CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IP-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p-~~D~v~~~ 183 (283)
..+..+|||+|||+|..+..+++.. ++.+++++|+ +..++.+++ ..+++++.+|+.+ . ++ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4556899999999999999999986 6789999999 777766543 2458999999976 2 33 59999874
Q ss_pred cc------ccC-------CChhH-------HHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 184 LV------FHG-------LGDED-------GLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 184 ~v------lh~-------~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
-- +.+ ++..+ ...+|+++.+.|+| ||+++.....+
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCC
Confidence 21 111 11122 24689999999999 78887655433
No 145
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.59 E-value=4.4e-07 Score=82.88 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=76.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC-CceEEEec--
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP-PADAFLFK-- 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p-~~D~v~~~-- 183 (283)
.....+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++ ..+|+++.+|..+ +.+ .||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 34567999999999999999888764 468999999 777766654 3468999999987 322 49999962
Q ss_pred ----ccc-------cCCChhHH-------HHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 184 ----LVF-------HGLGDEDG-------LKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 184 ----~vl-------h~~~d~~~-------~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
.++ ..++.++. .++|+++.+.|+| ||+++.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 111 12333322 3689999999999 788888775554
No 146
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.59 E-value=7.2e-08 Score=77.55 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=91.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCC---CCeEEE-EcCCCC--CCCCceEEEecccccC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEA---DNLKYI-AGDMFQ--FIPPADAFLFKLVFHG 188 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~-~~d~~~--~~p~~D~v~~~~vlh~ 188 (283)
.....++||+|||||.....+...- -+.+++|+ ..+++.|.+. +....- ..+|.. ....+|+|....||-.
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Y 200 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPY 200 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHh
Confidence 3447899999999999999887763 35689999 7788887752 111111 112443 2235999999999987
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeee
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 268 (283)
+.+-+ .++--+...|+| ||-+.+.-...++.... ++.-..-...+++-++++++..||++++
T Consensus 201 lG~Le--~~~~~aa~~L~~---gGlfaFSvE~l~~~~~f-------------~l~ps~RyAH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 201 LGALE--GLFAGAAGLLAP---GGLFAFSVETLPDDGGF-------------VLGPSQRYAHSESYVRALLAASGLEVIA 262 (287)
T ss_pred hcchh--hHHHHHHHhcCC---CceEEEEecccCCCCCe-------------ecchhhhhccchHHHHHHHHhcCceEEE
Confidence 77744 789999999999 66665544333332211 0000001123677789999999999998
Q ss_pred EEEc
Q 023384 269 ITPI 272 (283)
Q Consensus 269 ~~~~ 272 (283)
+.++
T Consensus 263 ~~~t 266 (287)
T COG4976 263 IEDT 266 (287)
T ss_pred eecc
Confidence 8665
No 147
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.58 E-value=2.3e-07 Score=73.66 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=66.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEEcCCCCCC------C-CceE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE---------ADNLKYIAGDMFQFI------P-PADA 179 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~~~------p-~~D~ 179 (283)
.....+|||||||+|..++.+++.++..+++..|.+++++..+. ..++.+...|..++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 44568999999999999999999878889999999666543332 477888888886632 2 4999
Q ss_pred EEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 180 FLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 180 v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
|+.+.++++ ++....+++-+.+.|+| ++.+++.....
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence 999999984 56677889999999999 56666665544
No 148
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.58 E-value=3.9e-07 Score=73.70 Aligned_cols=91 Identities=16% Similarity=0.327 Sum_probs=67.5
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC--C--CC--CceEEEecccc
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ--F--IP--PADAFLFKLVF 186 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~--~p--~~D~v~~~~vl 186 (283)
..+||||||.|.++..+|+.+|+..++++|+ ...+..+.+ ..++.++.+|... + ++ ..|-|++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~--- 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN--- 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE---
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe---
Confidence 4899999999999999999999999999999 655544432 6899999999887 1 23 36666552
Q ss_pred cCCChh-----------HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 187 HGLGDE-----------DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 187 h~~~d~-----------~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+||+ -...+|+.+++.|+| ||.+.+..
T Consensus 96 --FPDPWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T 133 (195)
T PF02390_consen 96 --FPDPWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT 133 (195)
T ss_dssp --S-----SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred --CCCCCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence 3433 125789999999999 78886655
No 149
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=7.9e-07 Score=71.47 Aligned_cols=97 Identities=11% Similarity=0.209 Sum_probs=74.7
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC---C
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP---P 176 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p---~ 176 (283)
+++ .+. .+...+|||||||+|..+..+++.-- +++.+++ ++..+.|++ ..+|.++.+|-..-.| .
T Consensus 64 m~~-~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 64 MLQ-LLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHH-HhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 344 454 77889999999999999999888754 8899998 777777764 4569999999998433 5
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
||.|+.....-..|+ .+.+-|+| ||++++-.-
T Consensus 139 yD~I~Vtaaa~~vP~--------~Ll~QL~~---gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPE--------ALLDQLKP---GGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCH--------HHHHhccc---CCEEEEEEc
Confidence 999999776654444 34556898 799888664
No 150
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.56 E-value=5.1e-07 Score=73.58 Aligned_cols=101 Identities=17% Similarity=0.249 Sum_probs=83.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEE-cCCCC--C---CCCceEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIA-GDMFQ--F---IPPADAF 180 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~-~d~~~--~---~p~~D~v 180 (283)
.++.++||+||.+.|..++.++...| +.+.+.+|+ ++..+.|++ .++|..+. +|..+ . .++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999999 889999999 888877775 67788888 57766 2 2359999
Q ss_pred EecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCc
Q 023384 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEE 225 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~ 225 (283)
++ +-...+-...|..+.+.|+| |.++|+|.++....
T Consensus 137 FI-----DadK~~yp~~le~~~~lLr~----GGliv~DNvl~~G~ 172 (219)
T COG4122 137 FI-----DADKADYPEYLERALPLLRP----GGLIVADNVLFGGR 172 (219)
T ss_pred EE-----eCChhhCHHHHHHHHHHhCC----CcEEEEeecccCCc
Confidence 98 44556667889999999999 77788887776643
No 151
>PLN02476 O-methyltransferase
Probab=98.55 E-value=5.9e-07 Score=76.09 Aligned_cols=99 Identities=13% Similarity=0.089 Sum_probs=78.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---C------CCc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---I------PPA 177 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~------p~~ 177 (283)
..+.++|||||+++|..++.+++..| +.+++.+|. ++..+.|++ .++|+++.||..+- + +.|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 56679999999999999999999876 668999999 777766654 57999999998762 1 259
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
|+|++- -+...-...++.+.+.|+| |.++++|.++..
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~~----GGvIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVRV----GGVIVMDNVLWH 232 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCC----CcEEEEecCccC
Confidence 999984 3456678889999999999 455666766544
No 152
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.55 E-value=8.4e-07 Score=81.02 Aligned_cols=84 Identities=11% Similarity=0.121 Sum_probs=61.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC-----CC--CceEEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF-----IP--PADAFL 181 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~-----~p--~~D~v~ 181 (283)
.....+|||+|||+|.++..+++.. .+++++|+ +++++.+++ .++++++.+|+.+. ++ .||+|+
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 3456799999999999999999885 58999999 888877664 35799999998752 21 389998
Q ss_pred ecccccCCChhHHHHHHHHHHHhhcc
Q 023384 182 FKLVFHGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 182 ~~~vlh~~~d~~~~~iL~~~~~~L~p 207 (283)
+. -+...+..+++.+.+ ++|
T Consensus 373 ~d-----PPr~g~~~~~~~l~~-~~~ 392 (443)
T PRK13168 373 LD-----PPRAGAAEVMQALAK-LGP 392 (443)
T ss_pred EC-----cCCcChHHHHHHHHh-cCC
Confidence 73 232223355555554 577
No 153
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=7.1e-07 Score=81.26 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=77.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C----C--CCceEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F----I--PPADAF 180 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~----~--p~~D~v 180 (283)
.....+|||+|||+|..+..+++... ..+++++|+ ++.++.+++ ..+|+++.+|..+ + . ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 45668999999999999999999864 568999999 777766654 3468999999876 3 1 149999
Q ss_pred Eec------ccccCCCh-------hH-------HHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 181 LFK------LVFHGLGD-------ED-------GLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 181 ~~~------~vlh~~~d-------~~-------~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
++. .+++..++ ++ -.++|+++.+.||| ||+++.....+
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 973 34444333 11 25889999999999 79888776544
No 154
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.52 E-value=9.8e-07 Score=76.42 Aligned_cols=144 Identities=16% Similarity=0.152 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEE----cCCCCCC--C--CceEE
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--------ADNLKYIA----GDMFQFI--P--PADAF 180 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~----~d~~~~~--p--~~D~v 180 (283)
...++||||||+|.....++.+.++.+++++|+ +..++.|++ .++|++.. .+++..+ + .||++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999999888999999999999999 777777664 35777753 2444422 2 49999
Q ss_pred EecccccCCChhH---HHHHHHHHH----------------HhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccc
Q 023384 181 LFKLVFHGLGDED---GLKILKKRR----------------AAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM 241 (283)
Q Consensus 181 ~~~~vlh~~~d~~---~~~iL~~~~----------------~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
++.=-+|.-..+. +.+-.++.. +.+-+ ||.+-++..+..+.... .....+..
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS~~~------~~~~gwft 264 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEESKAF------AKQVLWFT 264 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHHHHH------HhhCcEEE
Confidence 9998888654432 122223222 22224 56666665555443211 11111111
Q ss_pred ccccCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 242 SVNATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 242 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
..-|+.-+.+.+.+.|++.|.+.++++..
T Consensus 265 --smv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 265 --SLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred --EEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 11255568999999999999988887776
No 155
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.50 E-value=1.1e-06 Score=70.54 Aligned_cols=95 Identities=18% Similarity=0.295 Sum_probs=69.8
Q ss_pred cCC--CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCC--eEEEEcCCCC--CCC--CceEEEecccc
Q 023384 116 FEG--LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADN--LKYIAGDMFQ--FIP--PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~--~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~r--v~~~~~d~~~--~~p--~~D~v~~~~vl 186 (283)
+++ ..-|||||||+|..+..+... ...++++|+ |++++.|.+ .. -.++-+|+-+ |++ .||.+|+...+
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeee
Confidence 444 678999999999999887765 578999999 999988875 22 3477888888 443 39998876655
Q ss_pred cCC---------ChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 187 HGL---------GDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 187 h~~---------~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
..+ +......++..++.+|++ |++.++
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~ 158 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKR---GARAVL 158 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhcc---CceeEE
Confidence 321 233455667789999998 677554
No 156
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=1.5e-06 Score=70.72 Aligned_cols=156 Identities=17% Similarity=0.242 Sum_probs=98.3
Q ss_pred hHHHhhccCCcchhHHhhCCchhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHH
Q 023384 57 SLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRII 136 (283)
Q Consensus 57 ~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l 136 (283)
.|.+.-++-+|--|...-|..+||.+..-|+.-..-.+ ...-+..+..+.. ..+...++|+|+|+..-++.+
T Consensus 25 GL~qtpktlpP~~FYD~~GS~LFe~I~~LPEYYpTRtE--aaIl~~~a~Eia~------~~g~~~lveLGsGns~Ktr~L 96 (321)
T COG4301 25 GLQQTPKTLPPKYFYDDRGSELFEQITRLPEYYPTRTE--AAILQARAAEIAS------ITGACTLVELGSGNSTKTRIL 96 (321)
T ss_pred HhhcCCcCCCCceeecccHHHHHHHHhccccccCchhH--HHHHHHHHHHHHH------hhCcceEEEecCCccHHHHHH
Confidence 33333333333334444456677777665543211110 1111222233333 456789999999999999888
Q ss_pred HHHCCC----CeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---CCC---ceEEEecccccCCChhHHHHHH
Q 023384 137 SEAFPG----IKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---IPP---ADAFLFKLVFHGLGDEDGLKIL 198 (283)
Q Consensus 137 ~~~~p~----~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~p~---~D~v~~~~vlh~~~d~~~~~iL 198 (283)
+.++-. ++++-+|+ ..+++...+ .-.+.-+++|+..+ +|. ==.+++.+.|.++++++|..+|
T Consensus 97 lda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl 176 (321)
T COG4301 97 LDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFL 176 (321)
T ss_pred HHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHH
Confidence 888766 78999999 555443221 34456677888763 343 2355778899999999999999
Q ss_pred HHHHHhhccCCCCcEEEE-EeeecCC
Q 023384 199 KKRRAAIASNGERGKVII-IDIVINA 223 (283)
Q Consensus 199 ~~~~~~L~p~~~gg~lli-~d~~~~~ 223 (283)
.+++.+|+| |-.+++ +|...+.
T Consensus 177 ~~l~~a~~p---Gd~~LlGvDl~k~A 199 (321)
T COG4301 177 TQLRGALRP---GDYFLLGVDLRKPA 199 (321)
T ss_pred HHHHhcCCC---cceEEEeccccCHH
Confidence 999999999 455544 6665543
No 157
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.46 E-value=1.2e-06 Score=74.28 Aligned_cols=79 Identities=20% Similarity=0.399 Sum_probs=61.5
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCCCc
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIPPA 177 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~ 177 (283)
...+++ ..+ .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +++.+
T Consensus 18 ~~~iv~-~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~ 92 (258)
T PRK14896 18 VDRIVE-YAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEF 92 (258)
T ss_pred HHHHHH-hcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhc
Confidence 345555 444 556689999999999999999998 358999999 667665543 4689999999998 77788
Q ss_pred eEEEeccccc
Q 023384 178 DAFLFKLVFH 187 (283)
Q Consensus 178 D~v~~~~vlh 187 (283)
|.|+++-..+
T Consensus 93 d~Vv~NlPy~ 102 (258)
T PRK14896 93 NKVVSNLPYQ 102 (258)
T ss_pred eEEEEcCCcc
Confidence 9888766544
No 158
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.46 E-value=1.6e-06 Score=73.76 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=75.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CCCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IPPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~~D~v~~~~ 184 (283)
.....+|||+|||+|..+..+++... ..+++.+|+ +..++.+++ ..++.++..|... + .+.||+|++.-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45668999999999999999998875 468999999 777765543 3568889888765 2 23599998721
Q ss_pred ------ccc-------CCChhHH-------HHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 185 ------VFH-------GLGDEDG-------LKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 185 ------vlh-------~~~d~~~-------~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
++. .|++++. .++|+++.+.||| ||+++.....+.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 221 2333322 4699999999999 788877665443
No 159
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.46 E-value=1.6e-06 Score=78.76 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=75.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C-C-C-CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F-I-P-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~-~-p-~~D~v~~~ 183 (283)
.....+|||+|||+|..+..+++.. +..+++.+|+ +..++.+++ ..+++++.+|..+ + . + .||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5566899999999999999999886 5679999999 777766654 2468899999876 3 2 2 49999872
Q ss_pred ---c---cccC-------CChh-------HHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 184 ---L---VFHG-------LGDE-------DGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 184 ---~---vlh~-------~~d~-------~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
. +++. ++.+ .-.++|.++.+.|+| ||.++.....+.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence 2 2221 1211 126789999999999 788777665544
No 160
>PRK04148 hypothetical protein; Provisional
Probab=98.44 E-value=2.8e-06 Score=63.74 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCccH-HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCC----CceEEEecccccCCCh
Q 023384 118 GLGSLVDVGGGNGS-LSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIP----PADAFLFKLVFHGLGD 191 (283)
Q Consensus 118 ~~~~vlDvGgG~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p----~~D~v~~~~vlh~~~d 191 (283)
...+|||||||+|. ++..|.+. +.+++++|+ +..++.+++ ..+.++.+|.|++-+ ++|+|...+ ++
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liysir-----pp 87 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIYSIR-----PP 87 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEEEeC-----CC
Confidence 34789999999996 77777765 679999999 777777764 457899999999533 589999876 55
Q ss_pred hHHHHHHHHHHHhhc
Q 023384 192 EDGLKILKKRRAAIA 206 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~ 206 (283)
.+...-+.++++...
T Consensus 88 ~el~~~~~~la~~~~ 102 (134)
T PRK04148 88 RDLQPFILELAKKIN 102 (134)
T ss_pred HHHHHHHHHHHHHcC
Confidence 666666666766655
No 161
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.43 E-value=1.2e-06 Score=73.96 Aligned_cols=90 Identities=17% Similarity=0.262 Sum_probs=62.3
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCCCce
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIPPAD 178 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~D 178 (283)
..+++ ..+ ..+..+|||||||+|.++..++++.+ +++++|. +..++.+++ ..+++++.+|+.+ +++.+|
T Consensus 19 ~~i~~-~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 19 QKIVE-AAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHH-hcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 44555 444 55678999999999999999999986 4888888 666655543 4689999999998 666566
Q ss_pred --EEEecccccCCChhHHHHHHHHHHH
Q 023384 179 --AFLFKLVFHGLGDEDGLKILKKRRA 203 (283)
Q Consensus 179 --~v~~~~vlh~~~d~~~~~iL~~~~~ 203 (283)
.+++++.=++++. .++.++..
T Consensus 94 ~~~~vvsNlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 94 KQLKVVSNLPYNISS----PLIFKLLE 116 (253)
T ss_pred CcceEEEcCChhhHH----HHHHHHhc
Confidence 3333343333443 44555544
No 162
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.42 E-value=3e-06 Score=65.03 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=90.6
Q ss_pred hhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-C--C
Q 023384 101 EILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-F--I 174 (283)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~--~ 174 (283)
...+..... ..+ +..+.-||++|.|||.++.+++++- +....+.++. ++-.....+ .+.++++.||.+. . .
T Consensus 34 s~lA~~M~s-~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l 110 (194)
T COG3963 34 SILARKMAS-VID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHHHHh-ccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHH
Confidence 344455555 555 6777899999999999999998874 5666788887 666665554 5677799999987 3 2
Q ss_pred ---C--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 175 ---P--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 175 ---p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
+ .||.|++.--+-.++-....++|+.+...|++ ||.++.+...
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 2 39999999999999999999999999999998 7888777754
No 163
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.41 E-value=8.4e-07 Score=72.10 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=64.9
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEEcCC
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---------------ADNLKYIAGDM 170 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~rv~~~~~d~ 170 (283)
+++ .+. +.....++|||||.|......+..++--+.+++++ +...+.+.. ..++++..+||
T Consensus 34 il~-~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 34 ILD-ELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHH-HTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHH-HhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 344 444 66678999999999999998888776556999998 554433321 46788999999
Q ss_pred CC-CC-----CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 171 FQ-FI-----PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 171 ~~-~~-----p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
.+ +. ..+|+|++++.+ |+++- ..-|++....||+ |.+++-...+.+..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~l-~~~L~~~~~~lk~---G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPDL-NLALAELLLELKP---GARIISTKPFCPRR 164 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HHH-HHHHHHHHTTS-T---T-EEEESS-SS-TT
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHHH-HHHHHHHHhcCCC---CCEEEECCCcCCCC
Confidence 98 42 358999999875 45554 4445777788998 67766655555443
No 164
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.39 E-value=5.4e-06 Score=66.79 Aligned_cols=121 Identities=15% Similarity=0.148 Sum_probs=90.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCC-CCC-----CceEEEecccccCCCh-
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQ-FIP-----PADAFLFKLVFHGLGD- 191 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p-----~~D~v~~~~vlh~~~d- 191 (283)
..++|||||=+...... .++-..++-+|+.+. . -.+...||++ |+| .||+|.++.||-..++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~------~--~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ------H--PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC------C--CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 36999999976654433 355667899998431 1 2246789999 876 2999999999999886
Q ss_pred hHHHHHHHHHHHhhccCCCCcE-----EEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 192 EDGLKILKKRRAAIASNGERGK-----VIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~-----lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
.+.-++|+++++.|+| +|. ++|+- |.. ...+.+..+.+.|.++++.-||..
T Consensus 121 ~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVl---P~~------------------Cv~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKP---PGLSLFPSLFLVL---PLP------------------CVTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHhCC---CCccCcceEEEEe---Cch------------------HhhcccccCHHHHHHHHHhCCcEE
Confidence 4577899999999999 576 55543 111 124677779999999999999999
Q ss_pred eeEEEcCC
Q 023384 267 YKITPIFG 274 (283)
Q Consensus 267 ~~~~~~~~ 274 (283)
++....+-
T Consensus 177 ~~~~~~~K 184 (219)
T PF11968_consen 177 VKYKKSKK 184 (219)
T ss_pred EEEEecCe
Confidence 88766543
No 165
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.39 E-value=1.4e-06 Score=74.30 Aligned_cols=74 Identities=22% Similarity=0.317 Sum_probs=56.8
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCC-CCCCc--
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQ-FIPPA-- 177 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p~~-- 177 (283)
..+++ .++ .....+|||||||+|.++..++++.+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++.+
T Consensus 32 ~~i~~-~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 32 DKIVD-AAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHH-hcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCc
Confidence 44455 444 55668999999999999999999975 8899999 777776654 3689999999998 65543
Q ss_pred eEEEec
Q 023384 178 DAFLFK 183 (283)
Q Consensus 178 D~v~~~ 183 (283)
+.++.+
T Consensus 107 ~~vv~N 112 (272)
T PRK00274 107 LKVVAN 112 (272)
T ss_pred ceEEEe
Confidence 555543
No 166
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.38 E-value=1.5e-06 Score=73.99 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=75.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC---CCC-CceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ---FIP-PADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p-~~D~v~ 181 (283)
++.++||-||||.|..++++++..+--+++.+|+ +.+++.+++ .+|++++..|..+ ..+ +||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3447999999999999999999998889999999 889887775 3899999999887 234 499999
Q ss_pred ecccccCCChh---HHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 182 FKLVFHGLGDE---DGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 182 ~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
+-..=.. ... -....++.++++|++ +|.++..
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 8543210 110 125789999999999 5665554
No 167
>PLN02823 spermine synthase
Probab=98.38 E-value=1.3e-06 Score=76.26 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=71.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCCC---CC-CceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQF---IP-PADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p-~~D~v~ 181 (283)
++.++||.||||.|..+.++++..+..+++++|+ +++++.+++ .+|++++.+|..+- .+ .||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3557999999999999999998767778999999 888877764 47999999998872 22 499999
Q ss_pred ecccccCCCh--h---HHHHHHH-HHHHhhccCCCCcEEEE
Q 023384 182 FKLVFHGLGD--E---DGLKILK-KRRAAIASNGERGKVII 216 (283)
Q Consensus 182 ~~~vlh~~~d--~---~~~~iL~-~~~~~L~p~~~gg~lli 216 (283)
+-.. ..+.. . -....++ .+++.|+| ||.+++
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 8531 11100 0 0246777 89999999 565544
No 168
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.38 E-value=2.1e-06 Score=71.79 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=77.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--C-C-------CC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--F-I-------PP 176 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~-~-------p~ 176 (283)
..+.++||+||.++|..++.+++..| +.+++.+|. ++..+.|++ .++|+++.||..+ + + .+
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 45668999999999999999999874 779999999 776666654 6899999998876 2 1 35
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
||+|++-. ....-...++.+.+.|+| |.++|+|.++-.
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~----GGviv~DNvl~~ 194 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKV----GGVIGYDNTLWN 194 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCC----CeEEEEcCCCCC
Confidence 99999843 455567888999999999 666777866543
No 169
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.38 E-value=1e-06 Score=79.99 Aligned_cols=122 Identities=21% Similarity=0.343 Sum_probs=74.7
Q ss_pred chhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhh--cCCCCeEEEEcCCccHHHHHHHHHC----CCCeEEEeec
Q 023384 77 KFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQI--FEGLGSLVDVGGGNGSLSRIISEAF----PGIKCTVLDL 150 (283)
Q Consensus 77 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~~~~----p~~~~~~~D~ 150 (283)
..|+.+++|+..-..|.+++.. .+.+ ..... -.....|+|||||+|.++...+++. -..+++.++-
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D-~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEk 222 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKD-RVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEK 222 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHH-HHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEES
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHh-hhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 3467777777666666655432 2222 11100 0124689999999999998776654 4578999997
Q ss_pred -hHHHhcC------CC-CCCeEEEEcCCCC-CCC-CceEEEecccccCCC-hhHHHHHHHHHHHhhcc
Q 023384 151 -PHVVANL------PE-ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGLG-DEDGLKILKKRRAAIAS 207 (283)
Q Consensus 151 -~~~~~~a------~~-~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~~-d~~~~~iL~~~~~~L~p 207 (283)
+...... .. .++|+++.+|+.+ ..| .+|+++.-.. -.+. .+-....|....+.|||
T Consensus 223 n~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp 289 (448)
T PF05185_consen 223 NPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELL-GSFGDNELSPECLDAADRFLKP 289 (448)
T ss_dssp STHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEE
T ss_pred CHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEecc-CCccccccCHHHHHHHHhhcCC
Confidence 5433221 11 6899999999999 667 5999977443 2222 34456678888899999
No 170
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.35 E-value=1.8e-06 Score=72.98 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=72.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHH-HhcCCC------------CCCeEEEEcCCCC-C----C---
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHV-VANLPE------------ADNLKYIAGDMFQ-F----I--- 174 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~-~~~a~~------------~~rv~~~~~d~~~-~----~--- 174 (283)
.+....++|+|||-|.-++..-++- --.++++|++++ ++++++ .-.+.|+++|.+. . +
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 3566789999999999998877762 236899999665 666664 1246789998876 2 2
Q ss_pred -CCceEEEecccccC-CC-hhHHHHHHHHHHHhhccCCCCcEE
Q 023384 175 -PPADAFLFKLVFHG-LG-DEDGLKILKKRRAAIASNGERGKV 214 (283)
Q Consensus 175 -p~~D~v~~~~vlh~-~~-d~~~~~iL~~~~~~L~p~~~gg~l 214 (283)
|.||+|-+..++|. |. .+.+...|+++.+.|+| ||.+
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~F 233 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVF 233 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEE
Confidence 34999999999996 44 46678889999999999 5543
No 171
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.31 E-value=2.1e-06 Score=69.62 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=65.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCC---C-CceEEEecccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFI---P-PADAFLFKLVF 186 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~---p-~~D~v~~~~vl 186 (283)
...+|||+|||+|.++.+++.+.. .+++++|. ++.++.+++ ..+++++.+|+++.+ . .||+|++.=-.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 347999999999999997666653 68999999 777665543 357999999987722 2 49999986554
Q ss_pred cCCChhHHHHHHHHHHHh--hccCCCCcEEEEEeeec
Q 023384 187 HGLGDEDGLKILKKRRAA--IASNGERGKVIIIDIVI 221 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~--L~p~~~gg~lli~d~~~ 221 (283)
+. .....+++.+.+. |+| +.+++++...
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~----~~iv~ve~~~ 161 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLAD----EALIYVESEV 161 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCC----CcEEEEEecC
Confidence 32 1122344444443 677 5566777543
No 172
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.29 E-value=7.7e-06 Score=66.50 Aligned_cols=124 Identities=19% Similarity=0.269 Sum_probs=86.4
Q ss_pred EEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC--C-ceEEEecccccCCC
Q 023384 122 LVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP--P-ADAFLFKLVFHGLG 190 (283)
Q Consensus 122 vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p--~-~D~v~~~~vlh~~~ 190 (283)
|.||||-+|.+.+.|++....-+++..|+ +.-++.|++ .+++++..+|-++.++ . .|+|++..+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988889999999 777776654 6899999999988554 3 788877664 5
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEE
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 270 (283)
-....+||.+....++. ..-+|+.+.. ....+++||.+.||.+.+-.
T Consensus 77 G~lI~~ILe~~~~~~~~----~~~lILqP~~-----------------------------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS----AKRLILQPNT-----------------------------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGTT------EEEEEESS------------------------------HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhcc----CCeEEEeCCC-----------------------------ChHHHHHHHHHCCCEEEEeE
Confidence 66678888887777665 3234433211 35678999999999998643
Q ss_pred Ec--CC-cceEEEEe
Q 023384 271 PI--FG-MRFLIEIY 282 (283)
Q Consensus 271 ~~--~~-~~~~i~~~ 282 (283)
-. .+ +.-||.+.
T Consensus 124 lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 124 LVEENGRFYEIIVAE 138 (205)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEeECCEEEEEEEEE
Confidence 33 33 45666654
No 173
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.28 E-value=1.6e-06 Score=72.30 Aligned_cols=97 Identities=20% Similarity=0.148 Sum_probs=77.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCC--CceEEEecccccCCCh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGD 191 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d 191 (283)
.+....++|+|||.|.+.. .+|.+-.+++|+ ...+..+++.+.......|+.. |.+ .+|..+...++|||+.
T Consensus 43 ~~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cCCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 4457889999999998875 358889999999 6666777664443677788888 765 4999999999999975
Q ss_pred -hHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 192 -EDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 192 -~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
....++++++.+.++| ||..+|.-.
T Consensus 119 ~~RR~~~l~e~~r~lrp---gg~~lvyvw 144 (293)
T KOG1331|consen 119 RERRERALEELLRVLRP---GGNALVYVW 144 (293)
T ss_pred HHHHHHHHHHHHHHhcC---CCceEEEEe
Confidence 4467889999999999 788777654
No 174
>PRK00536 speE spermidine synthase; Provisional
Probab=98.26 E-value=5e-06 Score=69.92 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=66.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCCC-CCCceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQF-IPPADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~-~p~~D~v~~~ 183 (283)
-++.++||=||||.|..++++++. |. +++.+|+ +++++.+++ .+|++++.. +.+. ...||+|++-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEc
Confidence 356699999999999999999986 54 9999999 888877664 678888762 2222 2359999986
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.. .+ ....+.++++|+| ||.++.
T Consensus 147 s~----~~---~~fy~~~~~~L~~---~Gi~v~ 169 (262)
T PRK00536 147 QE----PD---IHKIDGLKRMLKE---DGVFIS 169 (262)
T ss_pred CC----CC---hHHHHHHHHhcCC---CcEEEE
Confidence 43 22 3667999999999 465444
No 175
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.25 E-value=4.8e-06 Score=71.63 Aligned_cols=88 Identities=22% Similarity=0.384 Sum_probs=63.8
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p 175 (283)
..+++ ... .....+|||||||+|.++..+++.. .+++++|+ +..++.+++ .++++++.+|+.+ +.+
T Consensus 26 ~~Iv~-~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 26 DKIVE-KAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHHH-hcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 44555 444 5566899999999999999999874 46899998 777665543 3689999999998 677
Q ss_pred CceEEEecccccCCChhHHHHHH
Q 023384 176 PADAFLFKLVFHGLGDEDGLKIL 198 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL 198 (283)
.+|+++.+- =++++.+-..++|
T Consensus 101 ~~d~VvaNl-PY~Istpil~~ll 122 (294)
T PTZ00338 101 YFDVCVANV-PYQISSPLVFKLL 122 (294)
T ss_pred ccCEEEecC-CcccCcHHHHHHH
Confidence 789877643 3345554444444
No 176
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.25 E-value=5e-06 Score=70.70 Aligned_cols=92 Identities=23% Similarity=0.278 Sum_probs=69.3
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEEcCCCC-CCCC-ceEEEecccccCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ-FIPP-ADAFLFKLVFHGLG 190 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~-~D~v~~~~vlh~~~ 190 (283)
+-|||||||+|.++...+++. .-++..++-.++.+.|++ .+||.++.|.+.+ ++|. .|++|.--.=..+-
T Consensus 179 kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL~ 257 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYMLV 257 (517)
T ss_pred cEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhhh
Confidence 789999999999998777663 346888888887776664 7999999999999 8885 99998754333334
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEE
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVI 215 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~ll 215 (283)
++....-.-..++.|+| .|+++
T Consensus 258 NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 258 NERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred hHHHHHHHHHHHhhcCC---CCccc
Confidence 55444444557799999 57664
No 177
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.20 E-value=1.2e-05 Score=68.64 Aligned_cols=101 Identities=18% Similarity=0.305 Sum_probs=71.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC----CCCeEE--EEcCCCC---CCCCceEEEeccccc
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGI-KCTVLDL-PHVVANLPE----ADNLKY--IAGDMFQ---FIPPADAFLFKLVFH 187 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----~~rv~~--~~~d~~~---~~p~~D~v~~~~vlh 187 (283)
..+|||+|+|.|..+-+....++.. +++.+|. +.+++.++. ...... ...++.. +++..|+|+++++|-
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L~ 113 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVLN 113 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhhh
Confidence 4799999999999999888888854 5889998 666655443 111110 1112221 334579999999999
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
.++++...++++++.+.+. +.++|+|+-.+..
T Consensus 114 EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~G 145 (274)
T PF09243_consen 114 ELPSAARAELVRSLWNKTA-----PVLVLVEPGTPAG 145 (274)
T ss_pred cCCchHHHHHHHHHHHhcc-----CcEEEEcCCChHH
Confidence 9999777788888777665 4889999766543
No 178
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=8e-06 Score=64.24 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCCCceEEEecccccCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIPPADAFLFKLVFHGL 189 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~ 189 (283)
..++|+|+|||||.+++..+...| .+++++|+ |+.++.+++ ..++.|+..|..+.-..+|.++++=-+--+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~ 121 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQ 121 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccc
Confidence 457899999999999998776644 48999999 888887765 568999999998754568888886555433
No 179
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.18 E-value=2.1e-06 Score=70.75 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=67.5
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-CeEEEEcCCCC--C--CC--CceEEEecccc
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----AD-NLKYIAGDMFQ--F--IP--PADAFLFKLVF 186 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-rv~~~~~d~~~--~--~p--~~D~v~~~~vl 186 (283)
..+||||||.|.+...+|+++|+..++++++ ...+..+.+ .- ++.++++|..+ + ++ +-|-|.+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--- 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--- 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE---
Confidence 5899999999999999999999999999998 555443332 33 89999998876 2 22 24555442
Q ss_pred cCCChh-----------HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 187 HGLGDE-----------DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 187 h~~~d~-----------~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
|||+ -....|+.+.+.|+| ||.+.+..
T Consensus 127 --FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aT 164 (227)
T COG0220 127 --FPDPWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFAT 164 (227)
T ss_pred --CCCCCCCccccccccCCHHHHHHHHHHccC---CCEEEEEe
Confidence 3332 124689999999999 78887654
No 180
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.18 E-value=1.7e-05 Score=65.56 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhc-CCCCCCeE-EEEcCCCC--------CCCCceEEEecccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVAN-LPEADNLK-YIAGDMFQ--------FIPPADAFLFKLVF 186 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~rv~-~~~~d~~~--------~~p~~D~v~~~~vl 186 (283)
...++||+|||+|.++..+++. +..+++++|. +.++.. .++..++. +...|+.. +++.+|+.+++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~- 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI- 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH-
Confidence 4578999999999999999986 4568999999 545543 44445543 23334332 1224787777654
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCcc-------CCHHHHHHHH
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKE-------RTESEWAKLF 259 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~t~~e~~~ll 259 (283)
.+|..+.++|+| |-.++++-+-+.-.... .+ -+|-. .-.+++..++
T Consensus 153 ---------~~l~~i~~~l~~---~~~~~L~KPqFE~~~~~---------~~------~~giv~~~~~~~~~~~~~~~~~ 205 (228)
T TIGR00478 153 ---------SILPELDLLLNP---NDLTLLFKPQFEAGREK---------KN------KKGVVRDKEAIALALHKVIDKG 205 (228)
T ss_pred ---------hHHHHHHHHhCc---CeEEEEcChHhhhcHhh---------cC------cCCeecCHHHHHHHHHHHHHHH
Confidence 358889999998 44555554333211100 00 11222 2356777888
Q ss_pred HHCCCCeeeEEEcC
Q 023384 260 FDACFSHYKITPIF 273 (283)
Q Consensus 260 ~~aGf~~~~~~~~~ 273 (283)
.+.||++..+.+.+
T Consensus 206 ~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 206 ESPDFQEKKIIFSL 219 (228)
T ss_pred HcCCCeEeeEEECC
Confidence 88999998887764
No 181
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=8e-06 Score=65.09 Aligned_cols=99 Identities=18% Similarity=0.304 Sum_probs=72.4
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC----------------CCCeEEEE
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPE----------------ADNLKYIA 167 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~----------------~~rv~~~~ 167 (283)
+++ .++..+....+.||||+|+|.++..++... +....+++|. |+.++.+++ ..++.++.
T Consensus 72 ~le-~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 72 ALE-YLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHH-HHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 444 444446778999999999999999888543 3333488898 888765543 46788999
Q ss_pred cCCCC-C--CCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 168 GDMFQ-F--IPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 168 ~d~~~-~--~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
||... . ...||.|.+... +.++.++...-|+| ||+++|-
T Consensus 151 GDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~---gGrllip 192 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKP---GGRLLIP 192 (237)
T ss_pred CCccccCCccCCcceEEEccC--------ccccHHHHHHhhcc---CCeEEEe
Confidence 99988 2 235999988632 34667788888999 7988873
No 182
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.16 E-value=7.6e-06 Score=78.81 Aligned_cols=98 Identities=10% Similarity=0.129 Sum_probs=70.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEEcCCCCC---CC-CceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------A-DNLKYIAGDMFQF---IP-PADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~rv~~~~~d~~~~---~p-~~D~v~~ 182 (283)
.....+|||+|||+|.++..+++. ...+++.+|+ +.+++.+++ . ++++++.+|.++. .+ .||+|++
T Consensus 536 ~~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 536 MAKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred hcCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 334589999999999999999986 3447999999 777877664 2 5899999998872 23 5999998
Q ss_pred ccccc--------CC-ChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 183 KLVFH--------GL-GDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 183 ~~vlh--------~~-~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.=--. .+ ....-..+++.+.+.|+| ||.+++.
T Consensus 615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 42110 00 112345788899999999 6766543
No 183
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.16 E-value=5.7e-06 Score=69.46 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC---C-CC-CceEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ---F-IP-PADAF 180 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~-~p-~~D~v 180 (283)
++.++||=||+|.|..+.++++..+-.+++++|+ |.+++.+++ .+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4679999999999999999998766778999999 888887764 4799999999866 2 23 59999
Q ss_pred EecccccCCChh--HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 181 LFKLVFHGLGDE--DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 181 ~~~~vlh~~~d~--~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
++-..--..+.. -....++.++++|+| +|.+++.-
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 984432111111 135889999999999 56555443
No 184
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.12 E-value=1e-05 Score=70.60 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CC-CceEEEec
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IP-PADAFLFK 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p-~~D~v~~~ 183 (283)
...+|||+|||+|.++..+++. ..+++++|+ +++++.+++ ..+++|+.+|+.+ . .. .||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3489999999999999999984 568999999 888877664 3579999999976 2 22 48999885
No 185
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.11 E-value=1.7e-05 Score=71.08 Aligned_cols=99 Identities=7% Similarity=0.060 Sum_probs=68.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEEcCCCCCC------C-CceE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------A-DNLKYIAGDMFQFI------P-PADA 179 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~rv~~~~~d~~~~~------p-~~D~ 179 (283)
+....+|||+|||+|.++...+.. ...+++.+|+ +..++.+++ . ++++++.+|+++.. . .||+
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 345689999999999998876543 3458999999 777776654 2 47899999998721 2 4999
Q ss_pred EEecccccCCCh-------hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 180 FLFKLVFHGLGD-------EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 180 v~~~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
|++.-.-..-+. ..-..+++.+.+.|+| ||.++...
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~s 339 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFS 339 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 998533211111 1234556678899999 67766644
No 186
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=1e-05 Score=65.37 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=90.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CC--CeEEEEcCCCC-CCC--CceEEEecccccC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--AD--NLKYIAGDMFQ-FIP--PADAFLFKLVFHG 188 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~--rv~~~~~d~~~-~~p--~~D~v~~~~vlh~ 188 (283)
+....++|||||.|+....+.... --+.+..|. ..+++.++. .. .+....+|-.. ++. ++|+++.+..+|.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 456789999999999999999885 336788898 677776664 22 33455666555 554 4999999999986
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCcc-----C-CHHHHHHHHHHC
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKE-----R-TESEWAKLFFDA 262 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-t~~e~~~ll~~a 262 (283)
.+| ...-+.+|+.+||| .| ++|...+-.+.- ++.....-+.-+-..||-. + ...++-.+|..|
T Consensus 150 ~Nd--LPg~m~~ck~~lKP---Dg-~FiasmlggdTL-----yELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rA 218 (325)
T KOG2940|consen 150 TND--LPGSMIQCKLALKP---DG-LFIASMLGGDTL-----YELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRA 218 (325)
T ss_pred hcc--CchHHHHHHHhcCC---Cc-cchhHHhccccH-----HHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhc
Confidence 555 34667899999999 34 344443333321 1111111111111122211 1 246788999999
Q ss_pred CCCeeeE
Q 023384 263 CFSHYKI 269 (283)
Q Consensus 263 Gf~~~~~ 269 (283)
||....+
T Consensus 219 GF~m~tv 225 (325)
T KOG2940|consen 219 GFSMLTV 225 (325)
T ss_pred Cccccee
Confidence 9987654
No 187
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.08 E-value=2e-05 Score=71.93 Aligned_cols=84 Identities=15% Similarity=0.282 Sum_probs=60.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC-----C-C-CceEEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF-----I-P-PADAFL 181 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~-----~-p-~~D~v~ 181 (283)
..+..+|||+|||+|.++..+++.. .+++++|+ +++++.+++ ..+++|+.+|+.+. . . .+|+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4556799999999999999999874 47999999 888877764 35899999998651 1 1 389998
Q ss_pred ecccccCCChhH-HHHHHHHHHHhhcc
Q 023384 182 FKLVFHGLGDED-GLKILKKRRAAIAS 207 (283)
Q Consensus 182 ~~~vlh~~~d~~-~~~iL~~~~~~L~p 207 (283)
+.- +... ...+++.+. .++|
T Consensus 368 ~dP-----Pr~G~~~~~l~~l~-~l~~ 388 (431)
T TIGR00479 368 LDP-----PRKGCAAEVLRTII-ELKP 388 (431)
T ss_pred ECc-----CCCCCCHHHHHHHH-hcCC
Confidence 732 2111 235555544 3777
No 188
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.00 E-value=2.2e-05 Score=62.73 Aligned_cols=89 Identities=19% Similarity=0.258 Sum_probs=67.3
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHH---hcCCC---CCCeEEEEcCCCC-CCC-CceEEEecccccCCCh
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVV---ANLPE---ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGLGD 191 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~---~~a~~---~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~~d 191 (283)
+++|||+|.|.-++.++-.+|+.+++.+|. ..-+ +.+.. -++++++.+...+ ..+ .||+++++.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999997 3322 22221 5689999998888 333 599999988742
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
...+++-+...+++ ||+++..-
T Consensus 127 --l~~l~~~~~~~l~~---~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKP---GGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred --HHHHHHHHHHhcCC---CCEEEEEc
Confidence 34778888889999 78877754
No 189
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.00 E-value=1.7e-05 Score=63.92 Aligned_cols=96 Identities=11% Similarity=0.101 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---C--C-C-ceEEEe
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---I--P-P-ADAFLF 182 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~--p-~-~D~v~~ 182 (283)
...++||++||+|.++.+++.+... +++.+|. +..++.+++ .++++++.+|.++. . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 3479999999999999999998653 7999998 666655543 35789999999652 1 1 2 677777
Q ss_pred cccccCCChhHHHHHHHHHHH--hhccCCCCcEEEEEeeec
Q 023384 183 KLVFHGLGDEDGLKILKKRRA--AIASNGERGKVIIIDIVI 221 (283)
Q Consensus 183 ~~vlh~~~d~~~~~iL~~~~~--~L~p~~~gg~lli~d~~~ 221 (283)
-=.... .....+++.+.+ .|++ +.++|+|...
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~----~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILED----TVLIVVEEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCC----CeEEEEEecC
Confidence 443322 112344444433 4665 5677777543
No 190
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.99 E-value=2.3e-05 Score=64.95 Aligned_cols=75 Identities=25% Similarity=0.499 Sum_probs=60.3
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FI 174 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~ 174 (283)
.+.+++ .-+ ......||+||.|||.++..++++ ..+++.+++ |.++...++ +...+++.||+++ +.
T Consensus 47 ~~~I~~-ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 47 IDQIVE-KAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHh-ccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 344555 444 777889999999999999999998 667888888 777665543 5789999999999 88
Q ss_pred CCceEEEec
Q 023384 175 PPADAFLFK 183 (283)
Q Consensus 175 p~~D~v~~~ 183 (283)
|-||+++..
T Consensus 122 P~fd~cVsN 130 (315)
T KOG0820|consen 122 PRFDGCVSN 130 (315)
T ss_pred cccceeecc
Confidence 989988873
No 191
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=0.0006 Score=53.38 Aligned_cols=68 Identities=16% Similarity=0.358 Sum_probs=52.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCC--CCceEEEecccc
Q 023384 119 LGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFI--PPADAFLFKLVF 186 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~--p~~D~v~~~~vl 186 (283)
..-++|||||+|..+..+++.. |+..+...|+ |+.++...+ ..++..+..|+.+.+ .+.|+.+++--.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCc
Confidence 5789999999999999988864 8888999999 887766443 456778888888833 358888876543
No 192
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.96 E-value=1.9e-05 Score=67.99 Aligned_cols=93 Identities=19% Similarity=0.175 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEeccccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh 187 (283)
..+.|||||||+|.+++.-+++. ..++.++|-.++++.+.+ .+.|+++.|.+.+ .+| ..|+|+.-+.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 34899999999999999888886 568999998777766554 6779999999888 555 599997755333
Q ss_pred CC-ChhHHHHHHHHHHHhhccCCCCcEE
Q 023384 188 GL-GDEDGLKILKKRRAAIASNGERGKV 214 (283)
Q Consensus 188 ~~-~d~~~~~iL~~~~~~L~p~~~gg~l 214 (283)
.+ -+...-.+|-.=-+.|+| ||.+
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~---~G~i 163 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKE---GGLI 163 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCC---CceE
Confidence 22 132333444444467998 5644
No 193
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.92 E-value=4.1e-05 Score=68.39 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=50.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC---C-CCceEEEec
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF---I-PPADAFLFK 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~-p~~D~v~~~ 183 (283)
...+|||++||+|.++..++.. ..+++++|+ +..++.+++ .++++|+.+|+.+. . ..+|+|++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 3479999999999999999864 468999999 888776654 34799999998662 2 248998884
No 194
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.90 E-value=3.6e-05 Score=71.34 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=68.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC-CC-----CCCeEEEEcCCCC---CCC--CceEEEeccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANL-PE-----ADNLKYIAGDMFQ---FIP--PADAFLFKLV 185 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~-----~~rv~~~~~d~~~---~~p--~~D~v~~~~v 185 (283)
....+||||||.|.++..+++++|+..++++|+ ...+..+ ++ ..++.++.+|+.. .++ +.|-+++...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 457899999999999999999999999999998 4433322 21 4678888887642 344 2676666332
Q ss_pred ccCCChh-------HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 186 FHGLGDE-------DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 186 lh~~~d~-------~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
= =|+.. -....|+.+++.|+| ||.+.+..
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence 1 12111 135789999999999 78887654
No 195
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.84 E-value=4.1e-05 Score=65.60 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=58.8
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-C--CC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-F--IP 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~--~p 175 (283)
..+++ .+. ..+...+||.+||.|..+..+++.+| +.+++++|. |++++.+++ .+|++++.+||.+ . .+
T Consensus 9 ~Evl~-~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 9 DEVVD-ALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHH-hhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 45566 554 45567999999999999999999996 789999999 888887765 3589999998876 2 21
Q ss_pred ----CceEEEe
Q 023384 176 ----PADAFLF 182 (283)
Q Consensus 176 ----~~D~v~~ 182 (283)
.+|.|++
T Consensus 86 ~~~~~vDgIl~ 96 (296)
T PRK00050 86 EGLGKVDGILL 96 (296)
T ss_pred cCCCccCEEEE
Confidence 4777766
No 196
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.79 E-value=5.2e-05 Score=62.97 Aligned_cols=65 Identities=20% Similarity=0.342 Sum_probs=50.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEE----cCCCCCCC----CceEEEe
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIA----GDMFQFIP----PADAFLF 182 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~----~d~~~~~p----~~D~v~~ 182 (283)
...|||+|||+|..+..++...|+++++.+|. +.++..|.+ .+++.++. .|.+.+.+ ..|++++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 35799999999999999999999999999999 555554443 78888874 45554332 3788776
Q ss_pred c
Q 023384 183 K 183 (283)
Q Consensus 183 ~ 183 (283)
+
T Consensus 229 N 229 (328)
T KOG2904|consen 229 N 229 (328)
T ss_pred C
Confidence 4
No 197
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.77 E-value=8.4e-05 Score=62.28 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=84.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hHHHhcCC---------------------C-------------CC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIK-CTVLDL-PHVVANLP---------------------E-------------AD 161 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~---------------------~-------------~~ 161 (283)
...++||||+|.-.+. ++.+.+..+ ++..|. +...+..+ + ..
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 3468999999986653 333334443 677776 43332111 0 12
Q ss_pred CeE-EEEcCCCC--CC------CC-ceEEEecccccCCC--hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchh
Q 023384 162 NLK-YIAGDMFQ--FI------PP-ADAFLFKLVFHGLG--DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHE 229 (283)
Q Consensus 162 rv~-~~~~d~~~--~~------p~-~D~v~~~~vlh~~~--d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~ 229 (283)
.|+ ++..|.++ |+ |. +|++++..+|.--. .++-.+.++++.++||| ||.++++...- ...-.
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l~-~t~Y~-- 207 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVLG-STYYM-- 207 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEESS--SEEE--
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEcC-ceeEE--
Confidence 243 67788887 22 33 99999999887543 35678889999999999 77777766533 22100
Q ss_pred hhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEc---CCc--ceEEEEeC
Q 023384 230 LTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPI---FGM--RFLIEIYP 283 (283)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~---~~~--~~~i~~~~ 283 (283)
. .-..+ ..-..+.+.+++.|+++||.+.+.... ... ...+.|+|
T Consensus 208 ---v-G~~~F------~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 208 ---V-GGHKF------PCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp ---E-TTEEE------E---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred ---E-CCEec------ccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 0 00001 122347899999999999998887641 112 34566665
No 198
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.77 E-value=0.00053 Score=57.90 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=89.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechH-H-------Hhc---CC----------------------------
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPH-V-------VAN---LP---------------------------- 158 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~-~-------~~~---a~---------------------------- 158 (283)
...+||--|||-|.++-++++. +-.+.+.+..- + +.. ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4579999999999999999998 44455555421 1 111 00
Q ss_pred --------CCCCeEEEEcCCCC--CCC----CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 159 --------EADNLKYIAGDMFQ--FIP----PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 159 --------~~~rv~~~~~d~~~--~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
...++....|||.+ +.+ .+|+|+.+..+. +-+.....|+.|.+.||| ||..+=+-+.+-..
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkp---gG~WIN~GPLlyh~ 208 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKP---GGYWINFGPLLYHF 208 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhcc---CCEEEecCCccccC
Confidence 03567889999998 333 499999987775 345578999999999999 56333233333222
Q ss_pred ccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEE
Q 023384 225 EEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 271 (283)
... . ......-+.+.+|+.++.++.||++++-..
T Consensus 209 ~~~------------~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 EPM------------S-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCC------------C-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 110 0 000123577999999999999999986544
No 199
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.74 E-value=1.3e-05 Score=72.00 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=64.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEe---ec-hHHHhcCCCCCCeEEEEcCCCC---CCCC--ceEEEecccccC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVL---DL-PHVVANLPEADNLKYIAGDMFQ---FIPP--ADAFLFKLVFHG 188 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~--~D~v~~~~vlh~ 188 (283)
....+||||||+|.++..|+++ ++..+.+ |. +..+..|.+ ..+.-+-+-+.+ |+|. ||+|.+++++..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhccccccc
Confidence 3467999999999999999987 4433222 22 222333322 113323233322 6664 999999999999
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
|...+ ..+|-++-|+|+| ||.+++..+-.
T Consensus 194 W~~~~-g~~l~evdRvLRp---GGyfv~S~ppv 222 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRP---GGYFVLSGPPV 222 (506)
T ss_pred chhcc-cceeehhhhhhcc---CceEEecCCcc
Confidence 98876 3588899999999 77766655433
No 200
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.73 E-value=0.00011 Score=56.35 Aligned_cols=84 Identities=24% Similarity=0.354 Sum_probs=59.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---------CCCeEEEEcCCCC-C-CCCceE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEA----FPGIKCTVLDL-PHVVANLPE---------ADNLKYIAGDMFQ-F-IPPADA 179 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~-~p~~D~ 179 (283)
..+..+|+|+|||.|+++..++.. .|+.+++++|. +..++.+.+ ..++.+..+++.+ . ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356689999999999999999982 28899999998 665555442 3567777776665 2 224678
Q ss_pred EEecccccCCChhHHHHHHHHHHH
Q 023384 180 FLFKLVFHGLGDEDGLKILKKRRA 203 (283)
Q Consensus 180 v~~~~vlh~~~d~~~~~iL~~~~~ 203 (283)
++.-|.--++++ .+|+...+
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred EEEeecccchHH----HHHHHHHH
Confidence 777666555555 45555554
No 201
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=0.00013 Score=59.49 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=83.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHH---HhcCCC---CCCeEEEEcCCCC-C-CCC-ceEEEecccccC
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHV---VANLPE---ADNLKYIAGDMFQ-F-IPP-ADAFLFKLVFHG 188 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~---~~rv~~~~~d~~~-~-~p~-~D~v~~~~vlh~ 188 (283)
..+++|||.|.|.-++-++-.+|+++++.+|. ..- ++.+.+ -++++++.+...+ . .+. ||+|+++.+--
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 58999999999999999999999999999997 322 333332 5779999998887 3 335 99999987631
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeee
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 268 (283)
...++.-+...+++ ||+++..-... ++. -..+.+.....-|+.+.+
T Consensus 147 -----L~~l~e~~~pllk~---~g~~~~~k~~~-------------------------~~~-e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 147 -----LNVLLELCLPLLKV---GGGFLAYKGLA-------------------------GKD-ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred -----hHHHHHHHHHhccc---CCcchhhhHHh-------------------------hhh-hHHHHHHHHHhhcCcEEE
Confidence 34556667777887 56654321100 111 134556677777888888
Q ss_pred EEEc
Q 023384 269 ITPI 272 (283)
Q Consensus 269 ~~~~ 272 (283)
+...
T Consensus 193 ~~~~ 196 (215)
T COG0357 193 VFSL 196 (215)
T ss_pred EEEe
Confidence 7665
No 202
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.63 E-value=0.00015 Score=64.80 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=67.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC--C-CCCceEEEecccccC
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ--F-IPPADAFLFKLVFHG 188 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~-~p~~D~v~~~~vlh~ 188 (283)
..+|||++||+|..++.+++..+..++++.|+ +..++.+++ .+.+++..+|..+ . .+.||+|++.= .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 36899999999999999999887668999999 877776654 3456688888865 2 23599998832 2
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.. ...+|..+.+.+++ ||.+.|.
T Consensus 135 -Gs--~~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred -CC--cHHHHHHHHHHhcC---CCEEEEE
Confidence 11 23667887788898 6777776
No 203
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.59 E-value=0.00049 Score=56.03 Aligned_cols=127 Identities=15% Similarity=0.089 Sum_probs=88.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCC---CCC--CceEEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQ---FIP--PADAFL 181 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~---~~p--~~D~v~ 181 (283)
.+...+|||.-.|-|..+++-+++- .++++-++- |.+++.|+- ..+++++.||..+ +++ +||+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 3467899999999999999988873 237777777 888877763 4578999999987 355 388865
Q ss_pred ecccccCCC------hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHH
Q 023384 182 FKLVFHGLG------DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 255 (283)
Q Consensus 182 ~~~vlh~~~------d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 255 (283)
||-+ .--...+-+++++.|+| ||+++-.-- .+.. .+. |+. -+..+
T Consensus 211 -----HDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHYvG---~Pg~--------ryr---------G~d-~~~gV 261 (287)
T COG2521 211 -----HDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHYVG---NPGK--------RYR---------GLD-LPKGV 261 (287)
T ss_pred -----eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEEeC---CCCc--------ccc---------cCC-hhHHH
Confidence 4432 22356789999999999 788764321 1110 011 111 25678
Q ss_pred HHHHHHCCCCeeeEEEc
Q 023384 256 AKLFFDACFSHYKITPI 272 (283)
Q Consensus 256 ~~ll~~aGf~~~~~~~~ 272 (283)
.+.|+++||.+++....
T Consensus 262 a~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 262 AERLRRVGFEVVKKVRE 278 (287)
T ss_pred HHHHHhcCceeeeeehh
Confidence 89999999998876554
No 204
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.58 E-value=0.00086 Score=53.08 Aligned_cols=138 Identities=16% Similarity=0.077 Sum_probs=85.6
Q ss_pred hcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechHHHhc-----------CCC--CCCeEEEEcCCCC-CCC-Cce
Q 023384 115 IFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDLPHVVAN-----------LPE--ADNLKYIAGDMFQ-FIP-PAD 178 (283)
Q Consensus 115 ~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~-----------a~~--~~rv~~~~~d~~~-~~p-~~D 178 (283)
+++...+|+|+=.|.|.++..+.... |.-.++.+--.+...- +++ ..+++.+..+... ..| +.|
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 37788999999999999999887764 4444443322222111 111 3445555555444 333 367
Q ss_pred EEEecccccCC-----ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHH
Q 023384 179 AFLFKLVFHGL-----GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTES 253 (283)
Q Consensus 179 ~v~~~~vlh~~-----~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 253 (283)
+++..+.-|++ ....+.++-+.++++||| ||.++|.|.......... .... -..++..
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~~---dt~~-----------~~ri~~a 187 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGLS---DTIT-----------LHRIDPA 187 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCChh---hhhh-----------hcccChH
Confidence 77664444433 245678899999999999 788888887765433221 1110 1123567
Q ss_pred HHHHHHHHCCCCeeeE
Q 023384 254 EWAKLFFDACFSHYKI 269 (283)
Q Consensus 254 e~~~ll~~aGf~~~~~ 269 (283)
-..+..+++||+..--
T Consensus 188 ~V~a~veaaGFkl~ae 203 (238)
T COG4798 188 VVIAEVEAAGFKLEAE 203 (238)
T ss_pred HHHHHHHhhcceeeee
Confidence 7888999999987643
No 205
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00056 Score=57.30 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=53.1
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCC----CCCCeEEEEcCCCC-CCCC--
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLP----EADNLKYIAGDMFQ-FIPP-- 176 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~----~~~rv~~~~~d~~~-~~p~-- 176 (283)
.+.+++ ..+ ......|||||+|.|.++..|+++...+.++-+| +..++..+ ..++++++.+|+.+ ++++
T Consensus 19 ~~kIv~-~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVE-AAN--ISPGDNVLEIGPGLGALTEPLLERAARVTAIEID-RRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHH-hcC--CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC-HHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 456666 544 5557899999999999999999996654444444 43333332 36899999999999 8873
Q ss_pred -ceEEEe
Q 023384 177 -ADAFLF 182 (283)
Q Consensus 177 -~D~v~~ 182 (283)
++.++.
T Consensus 95 ~~~~vVa 101 (259)
T COG0030 95 QPYKVVA 101 (259)
T ss_pred CCCEEEE
Confidence 455444
No 206
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.53 E-value=0.00018 Score=56.52 Aligned_cols=95 Identities=18% Similarity=0.277 Sum_probs=73.9
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCCCceEEEecccccCCCh
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIPPADAFLFKLVFHGLGD 191 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d 191 (283)
..+.|+|.|+|.++...+++ .-+++.++. |...+.+.+ ..+++++.+|..+ ++.++|+|++-..=-.+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 68999999999999876665 557888888 777666665 5789999999999 8878999988654333445
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
++-+.+++.+.+-|+- .++++=.+.
T Consensus 112 E~qVpV~n~vleFLr~---d~tiiPq~v 136 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTIIPQEV 136 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccccHHH
Confidence 6668889999999997 477665443
No 207
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.49 E-value=0.00075 Score=58.46 Aligned_cols=92 Identities=22% Similarity=0.435 Sum_probs=70.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCeEEEEcCCCCCC----CCc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE-------------ADNLKYIAGDMFQFI----PPA 177 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~~----p~~ 177 (283)
++..++|-+|||.|..++++++ +|+ -+++.+|+ |.+++.++. ..|++++.-|.++-. ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5668999999999999999875 685 46899999 999988773 689999999998822 249
Q ss_pred eEEEecccccCCChhH--------HHHHHHHHHHhhccCCCCcEEEEE
Q 023384 178 DAFLFKLVFHGLGDED--------GLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~--------~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
|++|. |++|+. ...+-+-+++.|++ +|.+++.
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQ 406 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQ 406 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEe
Confidence 99887 455543 34556777888998 5766654
No 208
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.42 E-value=0.00038 Score=61.72 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=42.9
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ 172 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~ 172 (283)
.+|||++||+|.++..+++... +++++|. +++++.+++ .++++|+.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998863 8999999 888877765 3478999999865
No 209
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.41 E-value=0.0076 Score=52.44 Aligned_cols=99 Identities=15% Similarity=0.229 Sum_probs=72.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCCCC--C-CceEEEecccccCCChh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFI--P-PADAFLFKLVFHGLGDE 192 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~--p-~~D~v~~~~vlh~~~d~ 192 (283)
+....++|||||++|.++..++++ +.+++.+|...+.......++|+...+|-+... + .+|++++-.+-. +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P- 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---P- 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---H-
Confidence 356789999999999999999998 569999998666555555789999999998833 2 489998866642 2
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 193 DGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 193 ~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
.++++-+.+.|.. + -.+-.|+..-++-.
T Consensus 283 --~rva~lm~~Wl~~-g-~cr~aIfnLKlpmk 310 (357)
T PRK11760 283 --ARVAELMAQWLVN-G-WCREAIFNLKLPMK 310 (357)
T ss_pred --HHHHHHHHHHHhc-C-cccEEEEEEEcCCC
Confidence 2666777777775 1 13456666555433
No 210
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0043 Score=51.77 Aligned_cols=118 Identities=19% Similarity=0.265 Sum_probs=81.5
Q ss_pred HHHHhhhhhhhh----HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechHH-HhcCCC------
Q 023384 92 FNEAMASDTEIL----TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDLPHV-VANLPE------ 159 (283)
Q Consensus 92 f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~-~~~a~~------ 159 (283)
|-..|-..++.+ ...|+. .++ ...+.+|++-|.|+|.++.+++++. |.-+..-+|..+. .+.|.+
T Consensus 78 WTl~LphRTQI~Yt~Dia~I~~-~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg 154 (314)
T KOG2915|consen 78 WTLALPHRTQILYTPDIAMILS-MLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG 154 (314)
T ss_pred hhhhccCcceEEecccHHHHHH-Hhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC
Confidence 444455444322 344555 666 7888999999999999999999985 8888999998333 333332
Q ss_pred -CCCeEEEEcCCCC-CCC----CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 160 -ADNLKYIAGDMFQ-FIP----PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 160 -~~rv~~~~~d~~~-~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.+++++...|... -++ .+|.|++ |++.+. ..+-.++++||. + ||++.-+.+++
T Consensus 155 i~~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~-~-g~r~csFSPCI 213 (314)
T KOG2915|consen 155 IGDNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPW--EAIPHAAKILKD-E-GGRLCSFSPCI 213 (314)
T ss_pred CCcceEEEEeecccCCccccccccceEEE-----cCCChh--hhhhhhHHHhhh-c-CceEEeccHHH
Confidence 7899999999887 333 3899988 555543 335566668886 3 66776666554
No 211
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.36 E-value=0.0009 Score=56.83 Aligned_cols=97 Identities=16% Similarity=0.245 Sum_probs=65.4
Q ss_pred hhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCC
Q 023384 102 ILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIP 175 (283)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p 175 (283)
..++.+++ ..+ ......|||||+|.|.++..|++.. .++++++. +...+..++ .++++++.+|+.+ +.+
T Consensus 17 ~~~~~Iv~-~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 17 NIADKIVD-ALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHH-HHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGG
T ss_pred HHHHHHHH-hcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccH
Confidence 34566666 665 6677999999999999999999997 67888887 555444332 6899999999998 544
Q ss_pred C----ceEEEecccccCCChhHHHHHHHHHHHhhcc
Q 023384 176 P----ADAFLFKLVFHGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 176 ~----~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p 207 (283)
. -.+.+..+.=+ .-...++.++...-+.
T Consensus 92 ~~~~~~~~~vv~NlPy----~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY----NISSPILRKLLELYRF 123 (262)
T ss_dssp GHCSSSEEEEEEEETG----TGHHHHHHHHHHHGGG
T ss_pred HhhcCCceEEEEEecc----cchHHHHHHHhhcccc
Confidence 3 23334433322 2334667777664443
No 212
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.0002 Score=53.80 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCC--C-ceEEEeccccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIP--P-ADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p--~-~D~v~~~~vlh 187 (283)
.++.+.|+|||.|-++. +-.+|. -.++++|+ |+.++...+ .-.+.+.+.|+.++.+ . ||..++.--+.
T Consensus 48 Egkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 45899999999999994 444454 45889999 998887664 4456888899988433 3 89998877654
No 213
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.35 E-value=0.00039 Score=56.30 Aligned_cols=86 Identities=22% Similarity=0.307 Sum_probs=61.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCC-C-CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFI-P-PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~-p-~~D~v~~~~v 185 (283)
......|+|.-||.|.+++.+++..+..+++..|+ |..++..++ .+++..+.+|..+-. . .+|-|+|...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 45678999999999999999999778889999999 877655443 678999999998732 3 4998888553
Q ss_pred ccCCChhHHHHHHHHHHHhhcc
Q 023384 186 FHGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p 207 (283)
- .+...|..+.+.+++
T Consensus 179 ~------~~~~fl~~~~~~~~~ 194 (200)
T PF02475_consen 179 E------SSLEFLDAALSLLKE 194 (200)
T ss_dssp S------SGGGGHHHHHHHEEE
T ss_pred H------HHHHHHHHHHHHhcC
Confidence 2 234678888889998
No 214
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.34 E-value=0.0022 Score=50.93 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=71.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCCCceEEEecccccCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIPPADAFLFKLVFHGL 189 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~ 189 (283)
.-..++|||+|.|+|..+++-+++- ...++..|+ |..+..+.- .-.+.+...|..-+-+.+|+++...++++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 4456899999999999999877763 234566666 444333321 456677777776644569999999999865
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
+. +.+++. ....|+.. |..++|.|+..+.-
T Consensus 156 ~~--a~~l~~-~~~~l~~~--g~~vlvgdp~R~~l 185 (218)
T COG3897 156 TE--ADRLIP-WKDRLAEA--GAAVLVGDPGRAYL 185 (218)
T ss_pred hH--HHHHHH-HHHHHHhC--CCEEEEeCCCCCCC
Confidence 54 447777 66666652 67888877665543
No 215
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.33 E-value=0.00093 Score=56.63 Aligned_cols=95 Identities=16% Similarity=0.325 Sum_probs=55.7
Q ss_pred CCeEEEEcCCccHHHHH-HHHH-CCCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCC-C--CCCceEEEecc
Q 023384 119 LGSLVDVGGGNGSLSRI-ISEA-FPGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQ-F--IPPADAFLFKL 184 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~-l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~--~p~~D~v~~~~ 184 (283)
.++|+=||||.=-++.- +++. .++..++++|+ |+..+.+++ +.+++|+++|..+ + +..||+|++..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 36999999996655554 4444 36788999999 777766543 7899999999976 3 44699999877
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
..- .+.++..+||+++.+.|+| |.++++-
T Consensus 201 lVg-~~~e~K~~Il~~l~~~m~~---ga~l~~R 229 (276)
T PF03059_consen 201 LVG-MDAEPKEEILEHLAKHMAP---GARLVVR 229 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred hcc-cccchHHHHHHHHHhhCCC---CcEEEEe
Confidence 653 3344557999999999999 5666554
No 216
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.005 Score=52.43 Aligned_cols=136 Identities=13% Similarity=0.096 Sum_probs=89.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-----h-HHHhc-------------------------CC--------C
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-----P-HVVAN-------------------------LP--------E 159 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-----~-~~~~~-------------------------a~--------~ 159 (283)
..+||--|||.|.++..|+...+.+++--+.. . -++.. .+ .
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 56899999999999999999987776531110 0 00100 00 0
Q ss_pred ------CCCeEEEEcCCCC--CCC----CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccc
Q 023384 160 ------ADNLKYIAGDMFQ--FIP----PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEE 227 (283)
Q Consensus 160 ------~~rv~~~~~d~~~--~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~ 227 (283)
.+..+...|||.+ +.+ .+|+|+.+..+. +-......|..|.+.|+| ||..+=+-+.+-.....
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~---GGvWiNlGPLlYHF~d~ 305 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKP---GGVWINLGPLLYHFEDT 305 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccC---CcEEEeccceeeeccCC
Confidence 2334557799988 333 299999887664 445578889999999999 56555455554433221
Q ss_pred hhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEE
Q 023384 228 HELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 271 (283)
+ + .-...+-+.+.+++..+.+.-||++.+-..
T Consensus 306 ~---------g---~~~~~siEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 306 H---------G---VENEMSIELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred C---------C---CcccccccccHHHHHHHHHhcCcEEEEeee
Confidence 1 0 001125577999999999999999887543
No 217
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.32 E-value=0.00052 Score=61.05 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=42.4
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ 172 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~ 172 (283)
.+|||++||+|.++..+++... +++++|. +.+++.+++ .++++|+.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988753 7999999 777776654 3478999999865
No 218
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.31 E-value=0.0021 Score=52.34 Aligned_cols=99 Identities=14% Similarity=0.180 Sum_probs=74.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCC---------CCc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFI---------PPA 177 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~---------p~~ 177 (283)
+-+.++.||||.=||..+.+++.+.|. -+++.+|+ ++..+.+.+ ...|+++.++..+.+ .+|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 445689999999999999999999975 67899998 444443332 688999999887732 138
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
|.+++- +|-+. ......++.+.+++ |.++++|.++..
T Consensus 151 DfaFvD----adK~n-Y~~y~e~~l~Llr~----GGvi~~DNvl~~ 187 (237)
T KOG1663|consen 151 DFAFVD----ADKDN-YSNYYERLLRLLRV----GGVIVVDNVLWP 187 (237)
T ss_pred eEEEEc----cchHH-HHHHHHHHHhhccc----ccEEEEeccccC
Confidence 988873 34444 45889999999999 667777765543
No 219
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0026 Score=51.33 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=69.4
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeechHHHhcCCCCCCeEEEEcCCCCC-C--------C
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDLPHVVANLPEADNLKYIAGDMFQF-I--------P 175 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~-~--------p 175 (283)
.+.+ .+ ..+++..+|+|+|+..|.+++.+++... ..+++++|+.++-.. ..|.++++|++.+ . +
T Consensus 35 el~~-k~-~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 35 ELNE-KF-KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred HHHH-hc-CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccCccHHHHHHHHcC
Confidence 3444 55 2477889999999999999998888764 456999998544333 3499999999983 2 2
Q ss_pred C--ceEEEec---ccccCCCh------hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 176 P--ADAFLFK---LVFHGLGD------EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 176 ~--~D~v~~~---~vlh~~~d------~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
. +|+|++- ++--+++- .-+...+.-+...|+| ||.+++-.
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~ 159 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKV 159 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEE
Confidence 2 5998842 12222221 2234456666778998 67666544
No 220
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.28 E-value=0.0077 Score=48.85 Aligned_cols=116 Identities=12% Similarity=0.179 Sum_probs=83.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC---CceEEEeccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP---PADAFLFKLV 185 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p---~~D~v~~~~v 185 (283)
+...++.||||-++.+.+.+.+.+|..+++..|. +.-++.|.+ .++++...+|-+.++. ..|+++....
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 3445699999999999999999999999999998 655554432 7899999999988543 3788877553
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
.-.-...||++-.+-|+. --++ |..+.. ...++++||.+.+|.
T Consensus 95 ----GG~lI~~ILee~~~~l~~---~~rl-ILQPn~-----------------------------~~~~LR~~L~~~~~~ 137 (226)
T COG2384 95 ----GGTLIREILEEGKEKLKG---VERL-ILQPNI-----------------------------HTYELREWLSANSYE 137 (226)
T ss_pred ----cHHHHHHHHHHhhhhhcC---cceE-EECCCC-----------------------------CHHHHHHHHHhCCce
Confidence 455567777777777763 1122 222111 356788899999998
Q ss_pred eeeE
Q 023384 266 HYKI 269 (283)
Q Consensus 266 ~~~~ 269 (283)
+..-
T Consensus 138 I~~E 141 (226)
T COG2384 138 IKAE 141 (226)
T ss_pred eeee
Confidence 7653
No 221
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.28 E-value=0.00035 Score=55.59 Aligned_cols=100 Identities=18% Similarity=0.262 Sum_probs=63.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHh-------cCCC------CCCeEEEEcCCCCCCCC-ceEEEec
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVA-------NLPE------ADNLKYIAGDMFQFIPP-ADAFLFK 183 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~-------~a~~------~~rv~~~~~d~~~~~p~-~D~v~~~ 183 (283)
.-.+.|||||.|.+++.++..||+.-+.++++ -.|.+ .++. ..++.+...+.+.-.|+ |.--.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35799999999999999999999988888877 33322 2221 34556665555553443 2222222
Q ss_pred ccccCCChhH-----------HHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 184 LVFHGLGDED-----------GLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 184 ~vlh~~~d~~-----------~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
-.++-++|+. +..++.+..=.|++ ||.++.+..+.
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv~ 186 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDVK 186 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeHH
Confidence 2233333331 24567778888998 78888776543
No 222
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.27 E-value=0.0085 Score=50.78 Aligned_cols=147 Identities=16% Similarity=0.125 Sum_probs=94.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEEcCCCCCC----------CC-
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE---------ADNLKYIAGDMFQFI----------PP- 176 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~~~----------p~- 176 (283)
.+...||.+|||-=.-...+.. -++++++-+|.|++++.-++ ..+..++..|+.+.. ++
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCC-CCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 3456899999997766665532 12588889999998754332 468889999987321 11
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccc--cccccCCccCCHHH
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV--MSVNATGKERTESE 254 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~t~~e 254 (283)
.-++++-.++..++.++..++|+.+.+...| |..++.|.+.+-..... ........... .....--...+.++
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~----gs~l~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP----GSRLAFDYVRPLDGEWR-AGMRAPVYHAARGVDGSGLVFGIDRAD 233 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCC----CcEEEEEeccccchhHH-HHHHHHHHHhhhcccccccccCCChhh
Confidence 3478888899999999999999999998887 45566776655211110 00000000000 00000011246899
Q ss_pred HHHHHHHCCCCeeeE
Q 023384 255 WAKLFFDACFSHYKI 269 (283)
Q Consensus 255 ~~~ll~~aGf~~~~~ 269 (283)
..++|.+.||+..+.
T Consensus 234 ~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 234 VAEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHHCCCeeecC
Confidence 999999999998765
No 223
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.25 E-value=0.00012 Score=56.98 Aligned_cols=62 Identities=23% Similarity=0.482 Sum_probs=46.2
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---CC--C-ceEEEec
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---IP--P-ADAFLFK 183 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~p--~-~D~v~~~ 183 (283)
..|+|+-||.|..++.+++.++ +++.+|+ |..++.++. .++|.++.+|+++- +. . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3699999999999999999954 5889999 777776664 67999999999982 22 2 7999874
No 224
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.00014 Score=62.53 Aligned_cols=100 Identities=20% Similarity=0.392 Sum_probs=65.1
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCe-EEEeechHHHhc----CCC---CCCeEEEEcCCCC---CCCCceEEEecccccC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIK-CTVLDLPHVVAN----LPE---ADNLKYIAGDMFQ---FIPPADAFLFKLVFHG 188 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~~~~~~~----a~~---~~rv~~~~~d~~~---~~p~~D~v~~~~vlh~ 188 (283)
.+|||+|.|.|.-+.++-.-+|.++ ++++.....+.. ..+ ..+......|+.. ++|..|.|.+..++|.
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~e 194 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLDE 194 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhhh
Confidence 5699999999999988888899886 555555332221 111 2222333444443 4666666655555444
Q ss_pred ----CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 189 ----LGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 189 ----~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
=........++++...+.| ||.++|+|...+
T Consensus 195 Ll~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp 229 (484)
T COG5459 195 LLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTP 229 (484)
T ss_pred hccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCc
Confidence 3344445589999999999 899999997554
No 225
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.22 E-value=0.00028 Score=56.42 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEEcCCCCC---------C----CCceEEEec
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDLPHVVANLPEADNLKYIAGDMFQF---------I----PPADAFLFK 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~---------~----p~~D~v~~~ 183 (283)
...++||+||++|.++..++++. +..+++++|+...-. ...+.++.+|+.++ . ..+|+|++-
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 45899999999999999999987 778999999944311 13344445554431 1 248998875
Q ss_pred ccccCC---------ChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 184 LVFHGL---------GDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 184 ~vlh~~---------~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.....- .-+-+...|.-+.+.|+| ||.+++
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~ 137 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVI 137 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEE
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEE
Confidence 422111 112234445555567898 676555
No 226
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.19 E-value=0.0039 Score=47.56 Aligned_cols=95 Identities=19% Similarity=0.333 Sum_probs=63.1
Q ss_pred EEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-C--CC---eEEEEcCCCC---CCC---CceEEEeccccc
Q 023384 122 LVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE-A--DN---LKYIAGDMFQ---FIP---PADAFLFKLVFH 187 (283)
Q Consensus 122 vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-~--~r---v~~~~~d~~~---~~p---~~D~v~~~~vlh 187 (283)
++|+|||+|... .+....+. ..++++|. +..+..+.. . .. +.+..+|... ++. .+|++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999987 44444333 47788898 555554322 1 11 5777777664 333 48999 544444
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
++.+ ....++++.+.++| +|.+++.+.....
T Consensus 130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCC
Confidence 4444 56889999999999 6888777765443
No 227
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.14 E-value=0.00072 Score=55.99 Aligned_cols=89 Identities=21% Similarity=0.189 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCC--CceEEEecccccCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIP--PADAFLFKLVFHGL 189 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p--~~D~v~~~~vlh~~ 189 (283)
...+|+|||||.=-++.-.....|+.++++.|+ ...++.... ..+.++...|..+..| .+|+.++.-++|.+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPCL 184 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHHH
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHHH
Confidence 468999999999999998888889999999999 666655443 5677888889998544 49999999999877
Q ss_pred ChhHHHHHHHHHHHhhcc
Q 023384 190 GDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p 207 (283)
..+.. ..-.++.+.++.
T Consensus 185 e~q~~-g~g~~ll~~~~~ 201 (251)
T PF07091_consen 185 ERQRR-GAGLELLDALRS 201 (251)
T ss_dssp HHHST-THHHHHHHHSCE
T ss_pred HHHhc-chHHHHHHHhCC
Confidence 66543 222345555553
No 228
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.00028 Score=54.08 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=66.5
Q ss_pred CeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEEcCCCCC-----CCCceEEEec
Q 023384 120 GSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---------ADNLKYIAGDMFQF-----IPPADAFLFK 183 (283)
Q Consensus 120 ~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~~-----~p~~D~v~~~ 183 (283)
.+||++||| +|..+..++..-|...+-+.|- .+.++..++ ..++..+..+.... ...||.|++.
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 689999999 5666667777888888999997 444544432 34555555454442 1249999999
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.++. =|+.-..+.+-|...|+| .|+-++..
T Consensus 111 DClF--fdE~h~sLvdtIk~lL~p---~g~Al~fs 140 (201)
T KOG3201|consen 111 DCLF--FDEHHESLVDTIKSLLRP---SGRALLFS 140 (201)
T ss_pred cchh--HHHHHHHHHHHHHHHhCc---ccceeEec
Confidence 9874 466667889999999999 57755544
No 229
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.09 E-value=0.0014 Score=52.22 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=61.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCe---------EEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC--
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIK---------CTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP-- 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p-- 175 (283)
+.....|+|-=||+|.++++.+...++.. +++.|+ +.+++.+++ ...+.+...|+.+ +++
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 55668999999999999999888777776 899999 777766654 5678999999998 633
Q ss_pred CceEEEecccccC-CCh-hHH----HHHHHHHHHhhcc
Q 023384 176 PADAFLFKLVFHG-LGD-EDG----LKILKKRRAAIAS 207 (283)
Q Consensus 176 ~~D~v~~~~vlh~-~~d-~~~----~~iL~~~~~~L~p 207 (283)
.+|+|++.--.-. ... .+. .++++.+.+.+++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 4899998554332 122 222 3446666777775
No 230
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.08 E-value=0.00048 Score=49.83 Aligned_cols=90 Identities=23% Similarity=0.376 Sum_probs=39.2
Q ss_pred EEEcCCccHHHHHHHHHCCCC---eEEEeec-h---HHHhcCCC---CCCeEEEEcCCCCC---CC--CceEEEeccccc
Q 023384 123 VDVGGGNGSLSRIISEAFPGI---KCTVLDL-P---HVVANLPE---ADNLKYIAGDMFQF---IP--PADAFLFKLVFH 187 (283)
Q Consensus 123 lDvGgG~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~rv~~~~~d~~~~---~p--~~D~v~~~~vlh 187 (283)
||||+..|..+..+++..+.. +++.+|. + ...+..++ .++++++.+|..+- ++ .+|++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999998887655 5899998 5 23333332 67899999998762 33 589988854 23
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
..+....-++.+.+.|+| ||.+++-|
T Consensus 80 --~~~~~~~dl~~~~~~l~~---ggviv~dD 105 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAP---GGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred --CHHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence 345667789999999999 55555443
No 231
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.07 E-value=0.007 Score=55.55 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=71.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC---CCC-CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ---FIP-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p-~~D~v~~~ 183 (283)
.....+|||+++|.|.=+..+++...+ ..++..|+ +.-+...++ ..++.+...|... .++ .||.|++-
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456789999999999999999998754 57889998 555544432 3567777777654 234 38999852
Q ss_pred c------ccc-------CCChhHH-------HHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 184 L------VFH-------GLGDEDG-------LKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 184 ~------vlh-------~~~d~~~-------~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
- +++ .|+.++. .+||+++.+.||| ||.|+-....+
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEECCCC
Confidence 1 222 3333322 6889999999999 78776555443
No 232
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.00 E-value=0.00025 Score=56.59 Aligned_cols=147 Identities=16% Similarity=0.221 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechH-HHhcCCCCCCeEEEEc-CCCCCCCCceEEEecccccCCChhHHH
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPH-VVANLPEADNLKYIAG-DMFQFIPPADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~rv~~~~~-d~~~~~p~~D~v~~~~vlh~~~d~~~~ 195 (283)
...++||+|.|.|..+..++..+.. +...+++. +....++ .+.+++.. +..+.--++|+|.+.++|....++ -
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p--~ 186 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP--F 186 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--H
Confidence 3479999999999999887766543 33334422 3333332 22222221 222111149999999999766665 4
Q ss_pred HHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccC--CHHHHHHHHHHCCCCeeeEEEcC
Q 023384 196 KILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKER--TESEWAKLFFDACFSHYKITPIF 273 (283)
Q Consensus 196 ~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~~~~~~~~ 273 (283)
++|+.++.+|+|. .|++++ ..++|-..--. .........-.-+...+|+.+ ....+.++|+++||.+....+.|
T Consensus 187 kLL~Di~~vl~ps--ngrviv-aLVLP~~hYVE-~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlP 262 (288)
T KOG3987|consen 187 KLLEDIHLVLAPS--NGRVIV-ALVLPYMHYVE-TNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLP 262 (288)
T ss_pred HHHHHHHHHhccC--CCcEEE-EEEecccceee-cCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcCC
Confidence 8999999999993 466544 34443211000 000000000000011234433 23456788999999877655543
No 233
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.00 E-value=0.0038 Score=54.37 Aligned_cols=100 Identities=19% Similarity=0.209 Sum_probs=65.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHH-------CCCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCC-C-CC--
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEA-------FPGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQ-F-IP-- 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~-~p-- 175 (283)
.....+|+|-.||+|.++.++.+. .+..+++++|+ +..+..++. .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 345568999999999999998874 47889999999 666544331 3334688899887 3 32
Q ss_pred -CceEEEecccccCC--Ch-----------------hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 176 -PADAFLFKLVFHGL--GD-----------------EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 176 -~~D~v~~~~vlh~~--~d-----------------~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.||+|++.=.+-.. .+ ..-...+..+.+.|++ ||++.++-
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEe
Confidence 49999884332211 11 1112478889999999 78876654
No 234
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.97 E-value=0.002 Score=49.20 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=42.5
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ 172 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~ 172 (283)
.++|||||.|.++..+++.+|..+++.+|. |...+.+++ ..++.++.....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999999 777765553 2457777766665
No 235
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.78 E-value=0.015 Score=50.25 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=90.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHCC-CCeEEEeechHHHhcCCC---------CCCeEEEEcCCCC-CCC------Cc----
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDLPHVVANLPE---------ADNLKYIAGDMFQ-FIP------PA---- 177 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~-~~p------~~---- 177 (283)
...||-+|||-=.-+ ..-..| ++++.-+|+|++++.-++ ..++.+++.|+++ +.+ +|
T Consensus 93 ~~qvViLgaGLDTRa--yRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 93 IRQVVILGAGLDTRA--YRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred ccEEEEeccccccce--eecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 589999999743332 222334 478888899999875443 3489999999995 543 13
Q ss_pred -eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchh--hhhhhhhccccc-ccccCCccCCHH
Q 023384 178 -DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHE--LTETKFLFDIVM-SVNATGKERTES 253 (283)
Q Consensus 178 -D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~t~~ 253 (283)
-++++-.+|-.++.++..++|++|.....| |+. ++.+...+....... ............ .....-......
T Consensus 171 pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 246 (297)
T COG3315 171 PTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSR-VAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPA 246 (297)
T ss_pred CeEEEeccccccCCHHHHHHHHHHHHHhCCC---Cce-EEEeccccHHHHhcccchhhhhhccccccccccceeccCCHH
Confidence 378889999999999999999999999998 454 444443221111000 000000000000 000011123578
Q ss_pred HHHHHHHHCCCCeeeE
Q 023384 254 EWAKLFFDACFSHYKI 269 (283)
Q Consensus 254 e~~~ll~~aGf~~~~~ 269 (283)
+++.++.+.||.....
T Consensus 247 e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 247 EIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHHhcCEEEEec
Confidence 9999999999987765
No 236
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.77 E-value=0.016 Score=56.23 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHC----C--------------------------------------CCeEEEeec-hHH
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAF----P--------------------------------------GIKCTVLDL-PHV 153 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~----p--------------------------------------~~~~~~~D~-~~~ 153 (283)
.+...++|..||+|.++++.+... | ..+++++|+ +.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 446899999999999999876531 1 236899999 888
Q ss_pred HhcCCC-------CCCeEEEEcCCCC-CCC----CceEEEeccccc-CCC-hhHHHHHHHHHHHhhc---cCCCCcEEEE
Q 023384 154 VANLPE-------ADNLKYIAGDMFQ-FIP----PADAFLFKLVFH-GLG-DEDGLKILKKRRAAIA---SNGERGKVII 216 (283)
Q Consensus 154 ~~~a~~-------~~rv~~~~~d~~~-~~p----~~D~v~~~~vlh-~~~-d~~~~~iL~~~~~~L~---p~~~gg~lli 216 (283)
++.|++ .+++.+..+|+.+ +.+ .+|+|+++=-.- .+. .++...+.+.+-+.++ + |+++.+
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~---g~~~~l 345 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFG---GWNAAL 345 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCC---CCeEEE
Confidence 877664 4678999999987 433 389998864322 122 2344555555555555 5 677776
Q ss_pred Eee
Q 023384 217 IDI 219 (283)
Q Consensus 217 ~d~ 219 (283)
+..
T Consensus 346 lt~ 348 (702)
T PRK11783 346 FSS 348 (702)
T ss_pred EeC
Confidence 653
No 237
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.65 E-value=0.0026 Score=54.36 Aligned_cols=99 Identities=21% Similarity=0.349 Sum_probs=71.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHC--------------------CCCeEEEeec---hHHHhcCC-----------------
Q 023384 119 LGSLVDVGGGNGSLSRIISEAF--------------------PGIKCTVLDL---PHVVANLP----------------- 158 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~----------------- 158 (283)
..+||-||||.|.-..+++..+ |.++++.+|+ ..++....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999999888888776 2367899998 33442211
Q ss_pred ----C--CCCeEEEEcCCCC-CC---------CCceEEEecccccCC---ChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 159 ----E--ADNLKYIAGDMFQ-FI---------PPADAFLFKLVFHGL---GDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 159 ----~--~~rv~~~~~d~~~-~~---------p~~D~v~~~~vlh~~---~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+ .-+++|...|+.+ .. |+.++|.+...++-+ +-.+..++|.++-+.++| |..++|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence 0 2356899999988 32 135777776665532 356778999999999999 788999985
Q ss_pred e
Q 023384 220 V 220 (283)
Q Consensus 220 ~ 220 (283)
-
T Consensus 244 p 244 (315)
T PF11312_consen 244 P 244 (315)
T ss_pred C
Confidence 3
No 238
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.61 E-value=0.077 Score=43.37 Aligned_cols=141 Identities=12% Similarity=0.092 Sum_probs=88.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHH----HhcCCCCCCeEEEEcCCCCCC------CCceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHV----VANLPEADNLKYIAGDMFQFI------PPADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~rv~~~~~d~~~~~------p~~D~v~~~ 183 (283)
+....+||-+|.++|.....+..-- |.-.+.+++. |.. +..+++..+|--+-.|...|. +..|+++.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 6778999999999999999998864 4778888887 533 445555778888888888752 347888763
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
-. + + +++.-++.|+..-||+ ||.++|.=-...-+...+| .+ .-.+-.+.|++.|
T Consensus 151 Va-Q--p-~Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t~~p------------------~~-vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 151 VA-Q--P-DQARIAALNARHFLKP---GGHLIISIKARSIDSTADP------------------EE-VFAEEVKKLKEEG 204 (229)
T ss_dssp -S-S--T-THHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SSSSH------------------HH-HHHHHHHHHHCTT
T ss_pred CC-C--h-HHHHHHHHHHHhhccC---CcEEEEEEecCcccCcCCH------------------HH-HHHHHHHHHHHcC
Confidence 32 2 2 4556678888899999 6777665322111111000 00 0123346678889
Q ss_pred CCeeeEEEcCC---cceEEEEe
Q 023384 264 FSHYKITPIFG---MRFLIEIY 282 (283)
Q Consensus 264 f~~~~~~~~~~---~~~~i~~~ 282 (283)
|++.+...+.. .+.+++++
T Consensus 205 ~~~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 205 FKPLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp CEEEEEEE-TTTSTTEEEEEEE
T ss_pred CChheEeccCCCCCCcEEEEEE
Confidence 99999888843 46666653
No 239
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.19 Score=40.35 Aligned_cols=140 Identities=11% Similarity=0.093 Sum_probs=93.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHH----HhcCCCCCCeEEEEcCCCCCC------CCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHV----VANLPEADNLKYIAGDMFQFI------PPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~rv~~~~~d~~~~~------p~~D~v~~~~ 184 (283)
+++..+||=+|..+|.....+..-.++-.+.+++. |.. +..+++..++--+-+|...|. +..|+++.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-- 151 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ-- 151 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE--
Confidence 78889999999999999999999888777777776 443 455666778888888888763 34788776
Q ss_pred cccCCC-hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 185 VFHGLG-DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 185 vlh~~~-d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
+.+ ++++.-+..|+..-||+ ||.+++.=-...-+.+.+| ++.-.+| .+-|++.|
T Consensus 152 ---DVAQp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~dp------------------~~vf~~e-v~kL~~~~ 206 (231)
T COG1889 152 ---DVAQPNQAEILADNAEFFLKK---GGYVVIAIKARSIDVTADP------------------EEVFKDE-VEKLEEGG 206 (231)
T ss_pred ---ecCCchHHHHHHHHHHHhccc---CCeEEEEEEeecccccCCH------------------HHHHHHH-HHHHHhcC
Confidence 333 34455567778888998 5655554322222222110 0001223 35677889
Q ss_pred CCeeeEEEcCC---cceEEEEe
Q 023384 264 FSHYKITPIFG---MRFLIEIY 282 (283)
Q Consensus 264 f~~~~~~~~~~---~~~~i~~~ 282 (283)
|++.+...+.. .|.+|.+.
T Consensus 207 f~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 207 FEILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred ceeeEEeccCCcccceEEEEEe
Confidence 99999888743 47777664
No 240
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.51 E-value=0.0037 Score=55.28 Aligned_cols=103 Identities=20% Similarity=0.204 Sum_probs=77.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~ 184 (283)
......++|+|||.|..+..+.. +.....+++|. +..+..... .....++.+|+.. +++ .||.+.+..
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 33445899999999999987665 45678888888 444433332 4556668889988 666 399999988
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
+.-+.++.. .++++++++++| ||..++-+.+....
T Consensus 187 ~~~~~~~~~--~~y~Ei~rv~kp---GG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 187 VVCHAPDLE--KVYAEIYRVLKP---GGLFIVKEWIKTAK 221 (364)
T ss_pred ecccCCcHH--HHHHHHhcccCC---CceEEeHHHHHhhh
Confidence 888888865 779999999999 78777777665443
No 241
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.46 E-value=0.011 Score=55.30 Aligned_cols=66 Identities=11% Similarity=0.156 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCC--------CeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC--------C
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPG--------IKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF--------I 174 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~--------~ 174 (283)
...+|+|.+||+|.++.++++..+. ..++++|+ +..+..++. ...+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4469999999999999999887752 56789999 666655432 12345565665431 1
Q ss_pred CCceEEEec
Q 023384 175 PPADAFLFK 183 (283)
Q Consensus 175 p~~D~v~~~ 183 (283)
+.||+|+..
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 359999874
No 242
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.45 E-value=0.0072 Score=48.36 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---C----CCceEEEe
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---I----PPADAFLF 182 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~----p~~D~v~~ 182 (283)
...++||+=||+|.++.+.+.+. ..+++.+|. +..+...++ .+++.++..|.+.. . ..||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 35899999999999999988874 347889998 666555443 45789999997652 1 24999999
Q ss_pred cccccCCChhHHHHHHHHHH--HhhccCCCCcEEEEEeeecC
Q 023384 183 KLVFHGLGDEDGLKILKKRR--AAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 183 ~~vlh~~~d~~~~~iL~~~~--~~L~p~~~gg~lli~d~~~~ 222 (283)
-=....... ..+++..+. ..|++ +.++|+|....
T Consensus 121 DPPY~~~~~--~~~~l~~l~~~~~l~~----~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGLY--YEELLELLAENNLLNE----DGLIIIEHSKK 156 (183)
T ss_dssp --STTSCHH--HHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred CCCcccchH--HHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence 544332111 256677766 67887 67888887665
No 243
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.44 E-value=0.011 Score=47.88 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=52.9
Q ss_pred CeEEEEcCCccHHHH---HHHHHC-CCCeEEEeec-h-HHHhcCCC----CCCeEEEEcCCCCC-----C------CCce
Q 023384 120 GSLVDVGGGNGSLSR---IISEAF-PGIKCTVLDL-P-HVVANLPE----ADNLKYIAGDMFQF-----I------PPAD 178 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~---~l~~~~-p~~~~~~~D~-~-~~~~~a~~----~~rv~~~~~d~~~~-----~------p~~D 178 (283)
..|+++|--.|..+. .+++.+ +..+++++|+ . ..-..+.+ ..||++++||-.++ . +...
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~v 113 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHPV 113 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SSE
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCce
Confidence 899999976666555 455565 8889999998 2 22222222 58999999998763 1 1123
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 179 AFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 179 ~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
+|+. ..-|.. +.+...|+.....+++ |+.++|-|...
T Consensus 114 lVil-Ds~H~~--~hvl~eL~~y~plv~~---G~Y~IVeDt~~ 150 (206)
T PF04989_consen 114 LVIL-DSSHTH--EHVLAELEAYAPLVSP---GSYLIVEDTII 150 (206)
T ss_dssp EEEE-SS------SSHHHHHHHHHHT--T---T-EEEETSHHH
T ss_pred EEEE-CCCccH--HHHHHHHHHhCccCCC---CCEEEEEeccc
Confidence 4444 444433 3467889999999999 67777766554
No 244
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.36 E-value=0.031 Score=44.22 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=44.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEEc-CCCCC---------CCC--ceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDLPHVVANLPEADNLKYIAG-DMFQF---------IPP--ADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~-d~~~~---------~p~--~D~v~~ 182 (283)
+....+|||+||..|.++.-..++. |+..+.++|+-.... ...+.++.+ |+.+| .|+ .|+|+.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlS 142 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLS 142 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCCCcccEEEe
Confidence 5677899999999999999877765 999999999844322 233445555 55553 243 677765
No 245
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.32 E-value=0.1 Score=45.51 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=71.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEc-CCCC-CCCC--ceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAG-DMFQ-FIPP--ADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~-d~~~-~~p~--~D~v~~~~ 184 (283)
...+..|||==||||.++++.... ++++++.|+ ..+++.++. -....+..+ |... |+++ +|.|..--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456679999999999999987765 889999999 667777664 234444555 8887 7775 89887622
Q ss_pred c------ccCCC-hhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 185 V------FHGLG-DEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 185 v------lh~~~-d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
- ..--. ++-..++|+.+.+.|++ ||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence 1 21111 44467889999999998 787776553
No 246
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.09 Score=44.97 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=98.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC--CCCeEEEeechHHHhcCCC----------------------------CCCeEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF--PGIKCTVLDLPHVVANLPE----------------------------ADNLKY 165 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~----------------------------~~rv~~ 165 (283)
+.+...|+.+|||.-.+...+...+ +.++++-+|.|++++.--. +.+...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 6778899999999999999999988 7889999999877542110 233333
Q ss_pred EEcCCCC--CC----C------C-ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhh
Q 023384 166 IAGDMFQ--FI----P------P-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTE 232 (283)
Q Consensus 166 ~~~d~~~--~~----p------~-~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~ 232 (283)
+..|..+ .+ . + .-+++.--+|-.+.++++..+++.+.+..+. +.+++.|.+.+.+.-+.-...
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~Fg~vM~~ 240 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDRFGKVMLA 240 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCChHHHHHHH
Confidence 4444432 10 0 1 2244555577778899999999999998885 888999998866644320000
Q ss_pred hhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 233 TKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
.+-....-...--..-|.+..++=+.++||+-+.+..+
T Consensus 241 --nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 241 --NLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred --HHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 00011100000022347888888899999998887655
No 247
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.29 E-value=0.057 Score=43.74 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=81.9
Q ss_pred HhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCeEEEEcC
Q 023384 95 AMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-----ADNLKYIAGD 169 (283)
Q Consensus 95 ~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~rv~~~~~d 169 (283)
.|..+.+...+...+ .. ...+.+||.||=|-|.....+.++-|..++++---|+|....+. .++|....|-
T Consensus 82 VMm~WEtpiMha~A~-ai---~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~ 157 (271)
T KOG1709|consen 82 VMMRWETPIMHALAE-AI---STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGR 157 (271)
T ss_pred hhhhhhhHHHHHHHH-HH---hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecc
Confidence 455555555555555 32 46779999999999999999999888877766555888877664 6788888875
Q ss_pred CCC---CCCC--ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 170 MFQ---FIPP--ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 170 ~~~---~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
..+ .+|+ ||-|+.--.-- .-++...+-+.+.+.||| +|.+-.+.-.
T Consensus 158 WeDvl~~L~d~~FDGI~yDTy~e--~yEdl~~~hqh~~rLLkP---~gv~SyfNg~ 208 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYDTYSE--LYEDLRHFHQHVVRLLKP---EGVFSYFNGL 208 (271)
T ss_pred hHhhhccccccCcceeEeechhh--HHHHHHHHHHHHhhhcCC---CceEEEecCc
Confidence 555 3443 88876643211 135677888899999999 6776555543
No 248
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.29 E-value=0.011 Score=52.87 Aligned_cols=95 Identities=17% Similarity=0.249 Sum_probs=71.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC--------CCCeEEEEcCCCCCC----C---CceEEE
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGI-KCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQFI----P---PADAFL 181 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~----p---~~D~v~ 181 (283)
+++|||+=|=||.++...+.. +. ++|.+|+ ..+++.+++ ..++.|+.+|.|+-+ . .||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 789999999999999887776 55 8999999 667777764 577899999999832 2 499999
Q ss_pred eccc------ccCCC-hhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 182 FKLV------FHGLG-DEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 182 ~~~v------lh~~~-d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+-=. =.-|+ ..+-.+++..+.+.|+| ||.+++..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s 336 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSS 336 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence 8210 00011 23457889999999999 67777655
No 249
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.23 E-value=0.017 Score=49.85 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=52.3
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ 172 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~ 172 (283)
+.+++ .+. ......+||.=+|.|..+.+++++.|+.+++++|. |.+++.+++ .+|+.++.++|.+
T Consensus 10 ~Evl~-~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 10 DEVVE-GLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHH-hcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 45555 444 45567999999999999999999998899999999 888877764 4588888887765
No 250
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.20 E-value=0.035 Score=46.29 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=61.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC------------CCCeEEEEcCCCCC------CCC-ce
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE------------ADNLKYIAGDMFQF------IPP-AD 178 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------~~rv~~~~~d~~~~------~p~-~D 178 (283)
...+||++|+|+|..++..+ ......++.-|.+.+++..+. +..+.+...+...+ .|. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa-~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAA-LLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHH-HHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 35689999999996655444 446788999998776544331 33566655555442 235 89
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 179 AFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 179 ~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+++.+.++.+-.. -..+++-++..|.. ++.+++.-.
T Consensus 165 lilasDvvy~~~~--~e~Lv~tla~ll~~---~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEES--FEGLVKTLAFLLAK---DGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecCCc--chhHHHHHHHHHhc---CCeEEEEEe
Confidence 9999998875433 23556666666765 464444433
No 251
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.16 E-value=0.056 Score=48.20 Aligned_cols=149 Identities=19% Similarity=0.235 Sum_probs=85.9
Q ss_pred CCCeEEEEcCCccHHHHHH--------HHH-------CCCCeEEEeechHH----H-hcCC---------------CCCC
Q 023384 118 GLGSLVDVGGGNGSLSRII--------SEA-------FPGIKCTVLDLPHV----V-ANLP---------------EADN 162 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l--------~~~-------~p~~~~~~~D~~~~----~-~~a~---------------~~~r 162 (283)
...+|+|+|||+|..+..+ .++ -|.+++..-|+|.. + .... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 3568999999999776543 222 25678888888632 1 1110 0112
Q ss_pred ---eEEEEcCCCC-CCCC--ceEEEecccccCCCh--h----------------------------------HHHHHHHH
Q 023384 163 ---LKYIAGDMFQ-FIPP--ADAFLFKLVFHGLGD--E----------------------------------DGLKILKK 200 (283)
Q Consensus 163 ---v~~~~~d~~~-~~p~--~D~v~~~~vlh~~~d--~----------------------------------~~~~iL~~ 200 (283)
+.-++|.|.. -+|. -++++.+..||.++. + |...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2345678888 4663 899999999997763 0 12345555
Q ss_pred HHHhhccCCCCcEEEEEeeecCCCccchh------hh--hhhhhcccccccc----------cCCccCCHHHHHHHHHHC
Q 023384 201 RRAAIASNGERGKVIIIDIVINAEEEEHE------LT--ETKFLFDIVMSVN----------ATGKERTESEWAKLFFDA 262 (283)
Q Consensus 201 ~~~~L~p~~~gg~lli~d~~~~~~~~~~~------~~--~~~~~~~~~~~~~----------~~~~~~t~~e~~~ll~~a 262 (283)
=++-|.| ||++++.-...++...... +. ....+.|+..-.. ..-..++.+|+++.+++.
T Consensus 223 Ra~ELvp---GG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~ 299 (386)
T PLN02668 223 RAQEMKR---GGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEAN 299 (386)
T ss_pred HHHHhcc---CcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhc
Confidence 5667898 8999888766653221100 00 0001111111110 112446899999999988
Q ss_pred C-CCeeeE
Q 023384 263 C-FSHYKI 269 (283)
Q Consensus 263 G-f~~~~~ 269 (283)
| |++.++
T Consensus 300 gsF~I~~l 307 (386)
T PLN02668 300 GSFAIDKL 307 (386)
T ss_pred CCEEeeee
Confidence 7 544443
No 252
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.03 E-value=0.02 Score=51.08 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=67.1
Q ss_pred CeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC--C--CCceEEEeccccc
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF--I--PPADAFLFKLVFH 187 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~--~--p~~D~v~~~~vlh 187 (283)
.+|||+-||+|..++..+++.++ -+++..|+ |+.++.+++ ..++++..+|...- . ..||+|.+-- ..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 58999999999999999998755 46899999 877766654 34578888888862 1 2499998843 32
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.+ ..++..+.+++++ ||.+.+.
T Consensus 125 ---s~--~~fld~al~~~~~---~glL~vT 146 (374)
T TIGR00308 125 ---TP--APFVDSAIQASAE---RGLLLVT 146 (374)
T ss_pred ---Cc--HHHHHHHHHhccc---CCEEEEE
Confidence 11 2678888888987 6777776
No 253
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.97 E-value=0.069 Score=46.77 Aligned_cols=118 Identities=20% Similarity=0.207 Sum_probs=86.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--CC-CCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--FI-PPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~~-p~~D~v~~~~ 184 (283)
...+.+|||.=+|.|.+++.++++-.- +++.+|+ |..++..++ .+++..+.||..+ +. +.+|=|+|..
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 345789999999999999999987543 3999999 888765554 5679999999988 33 4599999977
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
.- .+.+.+....+.+++ ||.+...+.+-.+... ++...++++...+.|.
T Consensus 265 p~------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~~~~----------------------~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 265 PK------SAHEFLPLALELLKD---GGIIHYYEFVPEDDIE----------------------ERPEKRIKSAARKGGY 313 (341)
T ss_pred CC------cchhhHHHHHHHhhc---CcEEEEEeccchhhcc----------------------cchHHHHHHHHhhccC
Confidence 53 234677888888998 6777777755443321 1245667777777775
Q ss_pred C
Q 023384 265 S 265 (283)
Q Consensus 265 ~ 265 (283)
+
T Consensus 314 ~ 314 (341)
T COG2520 314 K 314 (341)
T ss_pred c
Confidence 3
No 254
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.91 E-value=0.024 Score=51.55 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=60.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC--C-CC---CceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ--F-IP---PADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~-~p---~~D~v~~ 182 (283)
..+..+++|+=||.|.++..++++ ..+++++++ ++.++.|++ .+++.|+.+|.++ + .. .+|+|++
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 345679999999999999999965 567999999 888877765 5669999999887 2 21 3788887
Q ss_pred cccccCCChhHHH-HHHHHHHHhhcc
Q 023384 183 KLVFHGLGDEDGL-KILKKRRAAIAS 207 (283)
Q Consensus 183 ~~vlh~~~d~~~~-~iL~~~~~~L~p 207 (283)
|-|..-+. .+++.+.+ ++|
T Consensus 369 -----DPPR~G~~~~~lk~l~~-~~p 388 (432)
T COG2265 369 -----DPPRAGADREVLKQLAK-LKP 388 (432)
T ss_pred -----CCCCCCCCHHHHHHHHh-cCC
Confidence 44544344 44554444 455
No 255
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.89 E-value=0.18 Score=44.40 Aligned_cols=149 Identities=18% Similarity=0.203 Sum_probs=79.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC----------------CCCeEEEeechHH-----HhcCCC-------CCCe--EE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF----------------PGIKCTVLDLPHV-----VANLPE-------ADNL--KY 165 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~----------------p~~~~~~~D~~~~-----~~~a~~-------~~rv--~~ 165 (283)
.++.-+|+|+||.+|..+..+.... |.++++.-|+|.. ...... ..++ .-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 3455689999999999887654322 3467888898632 111110 2333 34
Q ss_pred EEcCCCC-CCCC--ceEEEecccccCCCh-------------------------------------hHHHHHHHHHHHhh
Q 023384 166 IAGDMFQ-FIPP--ADAFLFKLVFHGLGD-------------------------------------EDGLKILKKRRAAI 205 (283)
Q Consensus 166 ~~~d~~~-~~p~--~D~v~~~~vlh~~~d-------------------------------------~~~~~iL~~~~~~L 205 (283)
++|.|.. =+|. -|+++.+..||.++. .+...+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 6789998 3563 899999999997752 12345565556678
Q ss_pred ccCCCCcEEEEEeeecCCCccchh----hhh--hhhhcccccccc----------cCCccCCHHHHHHHHHHCC-CCee
Q 023384 206 ASNGERGKVIIIDIVINAEEEEHE----LTE--TKFLFDIVMSVN----------ATGKERTESEWAKLFFDAC-FSHY 267 (283)
Q Consensus 206 ~p~~~gg~lli~d~~~~~~~~~~~----~~~--~~~~~~~~~~~~----------~~~~~~t~~e~~~ll~~aG-f~~~ 267 (283)
+| ||++++.-...++...... ... ...+.++.--.. ..-..++.+|+++.+++.| |++.
T Consensus 174 v~---GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~ 249 (334)
T PF03492_consen 174 VP---GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIE 249 (334)
T ss_dssp EE---EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEE
T ss_pred cc---CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEE
Confidence 99 8998888877776322110 000 011222111110 1124569999999998776 5443
No 256
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.80 E-value=0.52 Score=39.11 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCC-----CceEEEecccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIP-----PADAFLFKLVF 186 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p-----~~D~v~~~~vl 186 (283)
.+++||=|| -.=..+++++...+..+++++|+ ...++..++ +-+|+.+..|+..++| .||+++.-=.
T Consensus 44 ~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 458999998 55566777777777889999999 555554432 4459999999999876 3999988332
Q ss_pred cCCChhHHHHHHHHHHHhhcc
Q 023384 187 HGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p 207 (283)
++.+-..-.+.+..++||.
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKG 140 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-S
T ss_pred --CCHHHHHHHHHHHHHHhCC
Confidence 3445666779999999997
No 257
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.73 E-value=0.051 Score=49.50 Aligned_cols=130 Identities=17% Similarity=0.164 Sum_probs=85.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-----hHHHhcCCCCCCeEEEEcCCCCCC---C-CceEEEeccccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-----PHVVANLPEADNLKYIAGDMFQFI---P-PADAFLFKLVFH 187 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~rv~~~~~d~~~~~---p-~~D~v~~~~vlh 187 (283)
.....|+|..+|.|.++.+|.+. | +.+... +..+...-+ -..--+-+|..+++ | +||++...++|-
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIyd-RGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYD-RGLIGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhh-cccchhccchhhccCCCCcchhheehhhhhh
Confidence 44578999999999999999754 3 333322 233322221 11222445666654 4 499999999888
Q ss_pred CCCh-hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 188 GLGD-EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 188 ~~~d-~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
.+.+ -+...||-++-|.|+| ||.++|-|.+- ..++++.+++.-.++.
T Consensus 439 ~~~~rC~~~~illEmDRILRP---~G~~iiRD~~~-----------------------------vl~~v~~i~~~lrW~~ 486 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRP---GGWVIIRDTVD-----------------------------VLEKVKKIAKSLRWEV 486 (506)
T ss_pred hhcccccHHHHHHHhHhhcCC---CceEEEeccHH-----------------------------HHHHHHHHHHhCcceE
Confidence 7654 4567889999999999 78888866311 2467778888887775
Q ss_pred eeEEEcCC---cceEEEEeC
Q 023384 267 YKITPIFG---MRFLIEIYP 283 (283)
Q Consensus 267 ~~~~~~~~---~~~~i~~~~ 283 (283)
.....-.+ ...|++|+|
T Consensus 487 ~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 487 RIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEEecCCCCCCCceEEEEEC
Confidence 43332232 478898887
No 258
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.18 Score=41.57 Aligned_cols=139 Identities=11% Similarity=0.087 Sum_probs=82.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-h-HHHhcCCCCCCeEEEEc-CCCC----CCC-CceEEEecccccC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-P-HVVANLPEADNLKYIAG-DMFQ----FIP-PADAFLFKLVFHG 188 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~-~~~~~a~~~~rv~~~~~-d~~~----~~p-~~D~v~~~~vlh~ 188 (283)
.....+||||..||.++..++++- ..+++++|. - +.....+..+||...+. |+.. .+. ..|++++--.+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSF-- 154 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSF-- 154 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeeh--
Confidence 456899999999999999888873 346888887 2 22333444667765443 3332 122 25666653322
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEE-EEEeeecCCCccchhhhhhhhhcccccccc-cCCccCCHHHHHHHHHHCCCCe
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKV-IIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~l-li~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
--...+|-.+...++| ++-+ +++-+-+...+.. ..-.-... ......-.+++.+++++.||++
T Consensus 155 ---ISL~~iLp~l~~l~~~---~~~~v~LvKPQFEagr~~---------v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~ 219 (245)
T COG1189 155 ---ISLKLILPALLLLLKD---GGDLVLLVKPQFEAGREQ---------VGKKGVVRDPKLHAEVLSKIENFAKELGFQV 219 (245)
T ss_pred ---hhHHHHHHHHHHhcCC---CceEEEEecchhhhhhhh---------cCcCceecCcchHHHHHHHHHHHHhhcCcEE
Confidence 2245789999999998 4433 3344333222111 11000000 1122334678899999999999
Q ss_pred eeEEEcC
Q 023384 267 YKITPIF 273 (283)
Q Consensus 267 ~~~~~~~ 273 (283)
..+...+
T Consensus 220 ~gl~~Sp 226 (245)
T COG1189 220 KGLIKSP 226 (245)
T ss_pred eeeEccC
Confidence 9887664
No 259
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.59 E-value=0.11 Score=45.49 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=65.5
Q ss_pred cCCCCeEEEEcC-CccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcC---CCCCCCC-ceEEEecccccCC
Q 023384 116 FEGLGSLVDVGG-GNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGD---MFQFIPP-ADAFLFKLVFHGL 189 (283)
Q Consensus 116 ~~~~~~vlDvGg-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d---~~~~~p~-~D~v~~~~vlh~~ 189 (283)
..+..+|+=+|. |.|+.+..++++.- .+++++|. ++-.+.+++-..-.++... ..++... +|+++..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 556788888874 67788888999765 99999999 7778777774444444433 2222333 898887554 2
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
..+....++|++ ||+++++-...
T Consensus 240 ------~~~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhc---CCEEEEECCCC
Confidence 336677788998 79999988763
No 260
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.47 E-value=0.012 Score=42.07 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL 150 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~ 150 (283)
.....+|||||+|.+.-.|.+. +-++.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 4578999999999999888876 667788885
No 261
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.43 E-value=0.11 Score=44.55 Aligned_cols=98 Identities=15% Similarity=0.244 Sum_probs=67.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCCCC------CCceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQFI------PPADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~------p~~D~v~ 181 (283)
...++|||+=|=||.++...++. ...+++.+|. ...++.+++ .++++|+..|.++.+ ..||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 45689999999999999976654 3457999999 667776654 478999999999721 2599998
Q ss_pred ecc---cccCCC-hhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 182 FKL---VFHGLG-DEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 182 ~~~---vlh~~~-d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+-= .=..+. ..+-.++++++.+.|+| ||.++...
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~s 238 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCS 238 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEc
Confidence 811 100111 23456789999999999 67655443
No 262
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.28 E-value=0.048 Score=47.07 Aligned_cols=66 Identities=24% Similarity=0.311 Sum_probs=48.0
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ 172 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~ 172 (283)
.+.+++ .+. ......+||.=-|.|..+.++++++|+.+++++|. |++++.+++ .+|+.++.++|.+
T Consensus 9 l~Evl~-~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLE-ALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHH-HHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHH-hhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 355566 554 56678999999999999999999999999999999 888866654 5788888877654
No 263
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.12 E-value=0.015 Score=47.17 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=44.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ 172 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~ 172 (283)
....|+|.-||.|...+.++.++| .++.+|+ |.-+..|+. .+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 557899999999999999999976 5678888 666766654 5799999999997
No 264
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=94.88 E-value=0.2 Score=39.93 Aligned_cols=100 Identities=16% Similarity=0.245 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---C---CCceEEEec
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---I---PPADAFLFK 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~---p~~D~v~~~ 183 (283)
.+.++||+=+|+|.++.+.+.+. ..+++.+|. ..+....++ ..++.++..|...- . +.||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 35899999999999999988885 346788887 555443332 47888888888741 1 139999996
Q ss_pred cccc-CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 184 LVFH-GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 184 ~vlh-~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
=-.+ ...+.+..-++-.-...|+| +.++++|.-..
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD 157 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence 6665 12222212222223466898 66677775443
No 265
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=94.84 E-value=0.15 Score=40.78 Aligned_cols=85 Identities=22% Similarity=0.340 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEEcCCCC-CC----------CC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE---------ADNLKYIAGDMFQ-FI----------PP 176 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~-~~----------p~ 176 (283)
++...||.+|||-=.....+....++++++-+|+|++++.-++ ..+..++..|+.+ .. ++
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 4445999999999999999988888999999999998765543 1235679999997 21 12
Q ss_pred -ceEEEecccccCCChhHHHHHHHHH
Q 023384 177 -ADAFLFKLVFHGLGDEDGLKILKKR 201 (283)
Q Consensus 177 -~D~v~~~~vlh~~~d~~~~~iL~~~ 201 (283)
.-++++-.++..++.+++..+|+.+
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 4578888899999999998888876
No 266
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.64 E-value=0.094 Score=46.43 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=55.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCC---------------------------------------eEEEeec-hHHHh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGI---------------------------------------KCTVLDL-PHVVA 155 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~---------------------------------------~~~~~D~-~~~~~ 155 (283)
+.....++|-=||+|.++++.+...+++ .++++|+ +.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 5555799999999999999988877542 2679999 88887
Q ss_pred cCCC-------CCCeEEEEcCCCC-CCC--CceEEEecc
Q 023384 156 NLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKL 184 (283)
Q Consensus 156 ~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~ 184 (283)
.|+. .+.|+|.++|+.. +-| .+|+++++=
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP 307 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP 307 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence 7664 6889999999987 444 589999853
No 267
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.52 E-value=0.09 Score=44.67 Aligned_cols=98 Identities=16% Similarity=0.229 Sum_probs=68.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC----------CCCeEEEEcCCCC---CC--CCce
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIK-CTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ---FI--PPAD 178 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~--p~~D 178 (283)
.++.++++-||||.|.+.++.++. +.+. +..+|+ ..+++..++ ..+|...-||-+. .. ..||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 456789999999999999998887 6654 667787 555554443 6899999998876 23 3599
Q ss_pred EEEecccccCCChhH----HHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 179 AFLFKLVFHGLGDED----GLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 179 ~v~~~~vlh~~~d~~----~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+|+.-.. +.--+. -...+.-+.++||+ +|.+.+...
T Consensus 198 Vii~dss--dpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDSS--DPVGPACALFQKPYFGLVLDALKG---DGVVCTQGE 237 (337)
T ss_pred EEEEecC--CccchHHHHHHHHHHHHHHHhhCC---CcEEEEecc
Confidence 9988431 100111 13456678899998 577766653
No 268
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.43 E-value=0.036 Score=39.90 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=44.8
Q ss_pred ceEEEecccc---c-CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCH
Q 023384 177 ADAFLFKLVF---H-GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTE 252 (283)
Q Consensus 177 ~D~v~~~~vl---h-~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 252 (283)
||+|++.+|. | +|.|+-...+++++++.|+| |.++|+|+-.-.. +..... ..-.+......-...+
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p----GG~lilEpQ~w~s-----Y~~~~~-~~~~~~~n~~~i~lrP 71 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP----GGILILEPQPWKS-----YKKAKR-LSEEIRENYKSIKLRP 71 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEE---HHH-----HHTTTT-S-HHHHHHHHH----G
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC----CCEEEEeCCCcHH-----HHHHhh-hhHHHHhHHhceEECh
Confidence 7999886653 2 57899999999999999999 6667777422110 000000 0000000011122355
Q ss_pred HHHHHHHHH--CCCCeeeEEEcC
Q 023384 253 SEWAKLFFD--ACFSHYKITPIF 273 (283)
Q Consensus 253 ~e~~~ll~~--aGf~~~~~~~~~ 273 (283)
+++.++|.+ .||+..+....+
T Consensus 72 ~~F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 72 DQFEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp GGHHHHHTSTTT---EEEEE---
T ss_pred HHHHHHHHhcccceEEEEEcccC
Confidence 678888877 599988765543
No 269
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=94.34 E-value=0.32 Score=43.59 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=64.7
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccH----HHHHHHHHC---CCCeEEEeechH-----HHhcCCC---------CCC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGS----LSRIISEAF---PGIKCTVLDLPH-----VVANLPE---------ADN 162 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~----~~~~l~~~~---p~~~~~~~D~~~-----~~~~a~~---------~~r 162 (283)
.+.|++ .+. -...-.|+|+|.|.|. +..+|+.+- |.+++|+++.|. .++.+.+ .-.
T Consensus 99 NqaIle-A~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~ 175 (374)
T PF03514_consen 99 NQAILE-AFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP 175 (374)
T ss_pred hHHHHH-Hhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc
Confidence 456777 555 3456789999999987 344445443 778999998832 2222221 233
Q ss_pred eEEEEc--CCCCCC--------C-CceEEEecccccCCChh------HHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 163 LKYIAG--DMFQFI--------P-PADAFLFKLVFHGLGDE------DGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 163 v~~~~~--d~~~~~--------p-~~D~v~~~~vlh~~~d~------~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
.+|... +-.+++ + .+=+|-+...||++.++ ....+|+.+ +.|+| -.++++|.-.+.
T Consensus 176 fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P----~vvv~~E~ea~~ 248 (374)
T PF03514_consen 176 FEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNP----KVVVLVEQEADH 248 (374)
T ss_pred EEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCC----CEEEEEeecCCC
Confidence 445442 211111 1 13345556678888633 233466554 57899 677888866544
No 270
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.94 E-value=0.45 Score=43.34 Aligned_cols=102 Identities=25% Similarity=0.280 Sum_probs=72.2
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC-----CCCCCeEEEEcCCCC-CCC--CceEEEecccccCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANL-----PEADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLG 190 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-----~~~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~ 190 (283)
-+++-+|||.-.++..+-+.. .-.++-+|. +-+++.. ++..-..+...|+.. .++ +||+++....++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 389999999998888776642 223566777 3333332 225567888889988 666 499999999999853
Q ss_pred -hhHH-------HHHHHHHHHhhccCCCCcEEEEEeee--cCCCc
Q 023384 191 -DEDG-------LKILKKRRAAIASNGERGKVIIIDIV--INAEE 225 (283)
Q Consensus 191 -d~~~-------~~iL~~~~~~L~p~~~gg~lli~d~~--~~~~~ 225 (283)
|+++ -..+..++++|+| ||+.+.+... .+..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~~~vp~~r 170 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLVQVVPQGR 170 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEeeeeccCCC
Confidence 3332 3458899999999 7998888774 44443
No 271
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.77 E-value=0.33 Score=37.00 Aligned_cols=97 Identities=16% Similarity=0.221 Sum_probs=62.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC-----C--CCCeEEEEcCCCC-CCCCceEEEecccccC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP-----E--ADNLKYIAGDMFQ-FIPPADAFLFKLVFHG 188 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~--~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~ 188 (283)
...+.+|+|+|.|....+.++.. -...+++++ |-.+..++ . +.++.|..-|.++ ++.+|.-+.+..+
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFga--- 147 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGA--- 147 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeeh---
Confidence 44799999999999888776654 345788888 55444333 1 6788999999998 7776543333221
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
+.-...+-.+++.-|+. +.+++-.-+-+|+
T Consensus 148 --es~m~dLe~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 148 --ESVMPDLEDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred --HHHHhhhHHHHHhhCcC---CCeEEEEecCCCc
Confidence 11122333455556666 6787777766655
No 272
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=93.40 E-value=0.92 Score=40.34 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=70.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCC----C--CCCeEEEEcCCCC-C--CC---CceEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG--IKCTVLDL-PHVVANLP----E--ADNLKYIAGDMFQ-F--IP---PADAF 180 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~----~--~~rv~~~~~d~~~-~--~p---~~D~v 180 (283)
...+.+|||.-.+.|.=+..+++..++ ..++.+|. +.-+.... + ..++..+..|... + .+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 566799999999999999999999876 55689998 54443333 2 3456677777543 1 22 28988
Q ss_pred Ee------ccccc-------CCChhH-------HHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 181 LF------KLVFH-------GLGDED-------GLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 181 ~~------~~vlh-------~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
++ ..+++ .++.++ -.+||+...+.||| ||.|+-....+.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~ 292 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLT 292 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCc
Confidence 77 22332 333332 25789999999999 787766665443
No 273
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.18 E-value=0.11 Score=46.05 Aligned_cols=49 Identities=27% Similarity=0.456 Sum_probs=37.0
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDM 170 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~ 170 (283)
.+|||+=||.|.++..+++.. -++++++. ++.++.|++ -++++|+.++.
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 389999999999999999875 47899998 888877764 57899988754
No 274
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.86 E-value=0.33 Score=41.53 Aligned_cols=66 Identities=24% Similarity=0.279 Sum_probs=53.6
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-----CCCeEEEEcCCCC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIK-CTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ 172 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~ 172 (283)
.+.+++ .+. .......||.==|.|..+.++++++|... .+++|. |.+++.+++ .+|+.++.++|.+
T Consensus 12 l~E~i~-~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVE-LLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHH-hcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 355566 555 55668999999999999999999998765 999999 999988875 6789888887654
No 275
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.84 E-value=0.34 Score=42.88 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=70.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec---hHHHhcCCC-------------CCCeEEEEcCCCCC------
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL---PHVVANLPE-------------ADNLKYIAGDMFQF------ 173 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~-------------~~rv~~~~~d~~~~------ 173 (283)
.......+|+|+|.|+....++...-.-.-+++.+ |.-....+. ...++.+.++|..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 56667899999999999987766543334445443 333322221 35678899999884
Q ss_pred CCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 174 IPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 174 ~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
.+.++++++.++.. +++...+ ++++..-+++ |.+++-.++..+..
T Consensus 270 ~~eatvi~vNN~~F--dp~L~lr-~~eil~~ck~---gtrIiS~~~L~~r~ 314 (419)
T KOG3924|consen 270 QTEATVIFVNNVAF--DPELKLR-SKEILQKCKD---GTRIISSKPLVPRP 314 (419)
T ss_pred hhcceEEEEecccC--CHHHHHh-hHHHHhhCCC---cceEeccccccccc
Confidence 23599999999874 5554444 4478888888 78988888887743
No 276
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=92.29 E-value=0.21 Score=45.69 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=44.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ 172 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~ 172 (283)
++..+.+||+=||||..+.++++. -.+++++++ |+.++.|+. -.+.+|++|-.++
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 566789999999999999988886 457888888 887777664 5788999994444
No 277
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.88 E-value=0.042 Score=42.08 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=37.1
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+.|+|+..|++.|++-++-...++.+++.||| ||++-|.-+
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvP 87 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVP 87 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcC
Confidence 38999999999999999999999999999999 798877653
No 278
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=91.67 E-value=0.76 Score=38.88 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=45.9
Q ss_pred HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHHHHHHHHhhcc
Q 023384 132 LSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 132 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p 207 (283)
++.+|.++.+..++++.|. +..++.+.+.+-+.-...+ .+.+.++|+|+++- |.....++|+++...+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCC
Confidence 3677888889999999999 7777776442323222222 22344689999865 556678888888888887
No 279
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=91.64 E-value=0.67 Score=39.82 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=70.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC----CCC-ceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF----IPP-ADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~----~p~-~D~v~~ 182 (283)
.....+|||..++.|.=+..+++..+ ..+++..|+ +.-+...++ ..++.....|.... .+. ||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45668899999999999999999887 678999998 555544332 45677776776652 233 899987
Q ss_pred c------ccccCCChh--------------HHHHHHHHHHHhh----ccCCCCcEEEEEeeec
Q 023384 183 K------LVFHGLGDE--------------DGLKILKKRRAAI----ASNGERGKVIIIDIVI 221 (283)
Q Consensus 183 ~------~vlh~~~d~--------------~~~~iL~~~~~~L----~p~~~gg~lli~d~~~ 221 (283)
- .++..-++- --.++|+++.+.+ +| ||+++-....+
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccH
Confidence 2 123322211 1257899999999 99 67776665443
No 280
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=91.31 E-value=3.9 Score=32.12 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=70.6
Q ss_pred EcCCccHHHHHHHHHCC---CCeEEEeec-hHHHhcCCC---------CCCeEE-EEcCCCC-C--C--C--CceEEEec
Q 023384 125 VGGGNGSLSRIISEAFP---GIKCTVLDL-PHVVANLPE---------ADNLKY-IAGDMFQ-F--I--P--PADAFLFK 183 (283)
Q Consensus 125 vGgG~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~rv~~-~~~d~~~-~--~--p--~~D~v~~~ 183 (283)
||=|.=.++.+|+++++ ++..|.+|. .++.+.-.. ...+.+ ...|..+ . . . .||.|++.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 66677778888999987 344567776 333333321 223332 3335554 1 2 1 39999997
Q ss_pred ccccCCC-----------hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCH
Q 023384 184 LVFHGLG-----------DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTE 252 (283)
Q Consensus 184 ~vlh~~~-----------d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 252 (283)
..---.. .+-...+++.+.+.|++ +|.|.|.=. .++.++.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~--------------------------~~~py~~ 133 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLK--------------------------DGQPYDS 133 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeC--------------------------CCCCCcc
Confidence 7643311 22345677888889998 687766331 1112222
Q ss_pred HHHHHHHHHCCCCeeeEEEc
Q 023384 253 SEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 253 ~e~~~ll~~aGf~~~~~~~~ 272 (283)
=+++++.+++||...+..+.
T Consensus 134 W~i~~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 134 WNIEELAAEAGLVLVRKVPF 153 (166)
T ss_pred ccHHHHHHhcCCEEEEEecC
Confidence 24567888999998887665
No 281
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=91.22 E-value=0.5 Score=40.68 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=40.7
Q ss_pred CCCeEEEEcCCccHH-HHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEEc----CCCCCC--C--CceE
Q 023384 118 GLGSLVDVGGGNGSL-SRIISEAFPGIKCTVLDL-PHVVANLPE--------ADNLKYIAG----DMFQFI--P--PADA 179 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~----d~~~~~--p--~~D~ 179 (283)
...++||||+|.... .+--++. .+.++++.|+ +..++.|++ .++|+++.. +++..+ + .||+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred cceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 357899999887754 4433444 4899999999 777776664 678888654 455532 1 3999
Q ss_pred EEecccccCCChh
Q 023384 180 FLFKLVFHGLGDE 192 (283)
Q Consensus 180 v~~~~vlh~~~d~ 192 (283)
.++.=-+|.-.++
T Consensus 181 tmCNPPFy~s~~e 193 (299)
T PF05971_consen 181 TMCNPPFYSSQEE 193 (299)
T ss_dssp EEE-----SS---
T ss_pred EecCCccccChhh
Confidence 9998888865554
No 282
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.05 E-value=4.6 Score=29.46 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=55.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCCC-C---CCceEEEecccccCCChh
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQF-I---PPADAFLFKLVFHGLGDE 192 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~-~---p~~D~v~~~~vlh~~~d~ 192 (283)
...++|++||-|.=......++++ ++.++..|+.+- .+ ...++++.-|.++| . .++|+|.+.. +++
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cC--cccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 445799999887655444444443 488999998433 33 36788999999996 2 3589888855 555
Q ss_pred HHHHHHHHHHHhhcc
Q 023384 193 DGLKILKKRRAAIAS 207 (283)
Q Consensus 193 ~~~~iL~~~~~~L~p 207 (283)
+..+-+-++.++.+-
T Consensus 82 El~~~ildva~aVga 96 (129)
T COG1255 82 ELQSAILDVAKAVGA 96 (129)
T ss_pred HHHHHHHHHHHhhCC
Confidence 666666667777653
No 283
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.99 E-value=1.1 Score=36.78 Aligned_cols=93 Identities=24% Similarity=0.387 Sum_probs=63.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC----CC--C---eEEEeechHHHhcCCCCCCeEEEEcCCCCC---------CC--
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF----PG--I---KCTVLDLPHVVANLPEADNLKYIAGDMFQF---------IP-- 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~----p~--~---~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~---------~p-- 175 (283)
|.+..++||+-...|.++..+.++. |. - +++.+|+..+.. -+.|.-+++|+..+ +.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCCC
Confidence 5677899999999999999988875 21 1 278889855533 35677788898873 12
Q ss_pred CceEEEec-----ccccCCChhHH----HHHHHHHHHhhccCCCCcEEE
Q 023384 176 PADAFLFK-----LVFHGLGDEDG----LKILKKRRAAIASNGERGKVI 215 (283)
Q Consensus 176 ~~D~v~~~-----~vlh~~~d~~~----~~iL~~~~~~L~p~~~gg~ll 215 (283)
.+|+|++- --+|+++.=-- ...|.-...+|+| ||.++
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FV 160 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFV 160 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeee
Confidence 38999984 35887765322 2334445567898 66643
No 284
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=90.93 E-value=0.57 Score=41.17 Aligned_cols=60 Identities=22% Similarity=0.395 Sum_probs=39.4
Q ss_pred CccHHHHHHHHhhhhhhhhHHHHHHHhhhh-hcCCCCeEEEEcCCccHHHHHHHHHC----C----CCeEEEeechH
Q 023384 85 NPGINQRFNEAMASDTEILTSFVVKAECKQ-IFEGLGSLVDVGGGNGSLSRIISEAF----P----GIKCTVLDLPH 152 (283)
Q Consensus 85 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~~----p----~~~~~~~D~~~ 152 (283)
.|+..+.|.+....+ +++ .+.. ..+....+|++|.|+|.++..+++.. | .+++..++..+
T Consensus 51 Apels~lFGella~~-------~~~-~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 51 APELSQLFGELLAEQ-------FLQ-LWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred chhHHHHHHHHHHHH-------HHH-HHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 356667777655433 222 2211 03345689999999999999887654 4 57888888843
No 285
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=90.89 E-value=0.78 Score=42.26 Aligned_cols=121 Identities=17% Similarity=0.302 Sum_probs=77.6
Q ss_pred hhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhh-hcCCCCeEEEEcCCccHHHHHHHHHC----CCCeEEEeec-h
Q 023384 78 FWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQ-IFEGLGSLVDVGGGNGSLSRIISEAF----PGIKCTVLDL-P 151 (283)
Q Consensus 78 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~~----p~~~~~~~D~-~ 151 (283)
-|+.++++|-.-..|.++.. ..+.+ ..+. ..+....|+-+|+|.|-+..+.+++- -.++.+.++- |
T Consensus 334 TYetFEkD~VKY~~Yq~Ai~-------~AL~D-rvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAIL-------KALLD-RVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhccchHHHHHHHHHH-------HHHHh-hCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 45666777755555544332 22223 2221 12224568889999999988766543 4566788887 7
Q ss_pred HHHhcCCC------CCCeEEEEcCCCC-CCC--CceEEEecccccCCChhH-HHHHHHHHHHhhcc
Q 023384 152 HVVANLPE------ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDED-GLKILKKRRAAIAS 207 (283)
Q Consensus 152 ~~~~~a~~------~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~-~~~iL~~~~~~L~p 207 (283)
.++...+. ..||+++..||.+ ..| ++|+++. -.|.-|.|.+ ...-|..+-+.|||
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkp 470 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKP 470 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCC
Confidence 66544432 7899999999998 544 4787653 4455566543 45668888899999
No 286
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=90.74 E-value=2.7 Score=35.90 Aligned_cols=124 Identities=12% Similarity=0.100 Sum_probs=72.3
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCCCCCeEEEEcCCCC-C----CCCceEEEecccccCCCh--
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIK-CTVLDL-PHVVANLPEADNLKYIAGDMFQ-F----IPPADAFLFKLVFHGLGD-- 191 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~----~p~~D~v~~~~vlh~~~d-- 191 (283)
+++|+-||.|.++..+.++. .+ +..+|+ +..++..+..-.-.+..+|+.+ . .+.+|+++..-....++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999999988873 55 567888 6555444331111145666665 2 245899988765554432
Q ss_pred ------hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCC
Q 023384 192 ------EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 192 ------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
+....++..+.+.++.. .-+++++|.+..-.. ..+....+++.+.|++.|+.
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~--~P~~~v~ENV~g~~~--------------------~~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEK--KPKYFLLENVKGLLT--------------------HDNGNTLKVILNTLEELGYN 137 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhc--CCCEEEEEcCcchhc--------------------cCchHHHHHHHHHHHhCCcE
Confidence 11222344443333321 136788886543111 01122467788889999987
Q ss_pred eee
Q 023384 266 HYK 268 (283)
Q Consensus 266 ~~~ 268 (283)
+..
T Consensus 138 ~~~ 140 (275)
T cd00315 138 VYW 140 (275)
T ss_pred EEE
Confidence 643
No 287
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=90.43 E-value=1.1 Score=43.54 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=56.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHC-------C-----CCeEEEeec-h---HHHhcCC---------------------C--
Q 023384 119 LGSLVDVGGGNGSLSRIISEAF-------P-----GIKCTVLDL-P---HVVANLP---------------------E-- 159 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~---------------------~-- 159 (283)
.-+|+|+|=|+|......++.+ | .++++.++. | +.+..+. .
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999888777655 4 467888885 3 1111110 0
Q ss_pred ------CCC--eEEEEcCCCCC---CC-CceEEEecccccC-CChhHHHHHHHHHHHhhccCCCCcEEE
Q 023384 160 ------ADN--LKYIAGDMFQF---IP-PADAFLFKLVFHG-LGDEDGLKILKKRRAAIASNGERGKVI 215 (283)
Q Consensus 160 ------~~r--v~~~~~d~~~~---~p-~~D~v~~~~vlh~-~~d~~~~~iL~~~~~~L~p~~~gg~ll 215 (283)
.++ +++..||+.+- +. .+|++++--.-=. -++--...+|+++++.++| ||.+.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~---~~~~~ 203 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARP---GATLA 203 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCC---CCEEE
Confidence 122 34566787652 22 3888887431110 0111124789999999998 56654
No 288
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.06 E-value=0.59 Score=41.84 Aligned_cols=61 Identities=10% Similarity=0.121 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCC---CCC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 160 ADNLKYIAGDMFQ---FIP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 160 ~~rv~~~~~d~~~---~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
.+|++++.+++.+ ..| ++|.+++..++-.+++++..++++.+.++++| ||+|+.-....+.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence 6899999998887 243 49999999999989999999999999999999 8999887765543
No 289
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=89.95 E-value=2.5 Score=31.43 Aligned_cols=78 Identities=17% Similarity=0.275 Sum_probs=42.5
Q ss_pred CCCCeEEEEcCCccHHH-HHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCC----CCceEEEecccccCCC
Q 023384 117 EGLGSLVDVGGGNGSLS-RIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFI----PPADAFLFKLVFHGLG 190 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~-~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~----p~~D~v~~~~vlh~~~ 190 (283)
....+|++||-|.=.-. ..|.+. +..+++.|+ +. .+ ...+.++.-|.|+|- .++|+|.+.+ +
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiR-----P 79 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIR-----P 79 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES------
T ss_pred CCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---cc--ccCcceeeecccCCCHHHhcCCcEEEEeC-----C
Confidence 34569999997765544 444444 489999999 54 22 267889999999963 2589998866 4
Q ss_pred hhHHHHHHHHHHHhhc
Q 023384 191 DEDGLKILKKRRAAIA 206 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~ 206 (283)
+.+...-+.++++...
T Consensus 80 P~El~~~il~lA~~v~ 95 (127)
T PF03686_consen 80 PPELQPPILELAKKVG 95 (127)
T ss_dssp -TTSHHHHHHHHHHHT
T ss_pred ChHHhHHHHHHHHHhC
Confidence 4455555666666654
No 290
>PRK10742 putative methyltransferase; Provisional
Probab=89.94 E-value=0.79 Score=38.33 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=48.9
Q ss_pred HHHHHHhhhhhcCCCC--eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHH-------hcCC------C--CCCeEEE
Q 023384 105 SFVVKAECKQIFEGLG--SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVV-------ANLP------E--ADNLKYI 166 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~--~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~-------~~a~------~--~~rv~~~ 166 (283)
+.+++ +.. +++.. +|||.=+|+|..+..++.. +++++.++. |.+. ..+. . ..|++++
T Consensus 76 ~~l~k-Avg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~ 150 (250)
T PRK10742 76 EAVAK-AVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (250)
T ss_pred cHHHH-HhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence 34555 443 45544 8999999999999999988 778999998 4432 2221 0 1467777
Q ss_pred EcCCCCC---CC-CceEEEe
Q 023384 167 AGDMFQF---IP-PADAFLF 182 (283)
Q Consensus 167 ~~d~~~~---~p-~~D~v~~ 182 (283)
.+|..+- .+ .||+|++
T Consensus 151 ~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 151 HASSLTALTDITPRPQVVYL 170 (250)
T ss_pred eCcHHHHHhhCCCCCcEEEE
Confidence 7776651 22 3777776
No 291
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=88.99 E-value=2.7 Score=31.96 Aligned_cols=105 Identities=25% Similarity=0.294 Sum_probs=60.9
Q ss_pred eEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC---CCC--CceEEEecccccCCC---------hhHHHHHHHHH
Q 023384 144 KCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ---FIP--PADAFLFKLVFHGLG---------DEDGLKILKKR 201 (283)
Q Consensus 144 ~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~---~~p--~~D~v~~~~vlh~~~---------d~~~~~iL~~~ 201 (283)
++.+||+ +++++..++ .+|++++..+-.. -++ ..|+++++.- .+| .+...+.|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 5789999 777776654 4689988875544 233 3788777432 222 34567789999
Q ss_pred HHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcC
Q 023384 202 RAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIF 273 (283)
Q Consensus 202 ~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 273 (283)
.+.|+| ||.+.|+-..--+.+.. +. ....+|.+-|.+..|.+.+....+
T Consensus 79 l~lL~~---gG~i~iv~Y~GH~gG~e----E~----------------~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKP---GGIITIVVYPGHPGGKE----ES----------------EAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEE---EEEEEEEE--STCHHHH----HH----------------HHHHHHHHTS-TTTEEEEEEEESS
T ss_pred HHhhcc---CCEEEEEEeCCCCCCHH----HH----------------HHHHHHHHhCCcceEEEEEEEccC
Confidence 999999 67776665332221111 00 013445555555678877776664
No 292
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.68 E-value=4.8 Score=36.08 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=61.6
Q ss_pred cCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEE---cC-CCCC---C-C--CceEEEec
Q 023384 116 FEGLGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIA---GD-MFQF---I-P--PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~---~d-~~~~---~-p--~~D~v~~~ 183 (283)
.....+||.+|+|. |..+..++++....+++++|. ++..+.+++.....++. .+ +.+. . + .+|+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45567899999988 889999999986546888887 66666554321122222 11 1111 1 1 37777653
Q ss_pred c---------------cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 184 L---------------VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 184 ~---------------vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
- +|+...+. ...++.+.+.|++ +|+++++..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcC
Confidence 2 12222333 3568888999999 799988764
No 293
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.06 E-value=0.91 Score=38.41 Aligned_cols=36 Identities=25% Similarity=0.505 Sum_probs=31.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-----CCCeEEEeech
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-----PGIKCTVLDLP 151 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~D~~ 151 (283)
+.+...++|+|||.|.++..++... +...++.+|..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 4566899999999999999999998 56789999983
No 294
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.41 E-value=3 Score=36.24 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=68.5
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCC-eEEEEcCCCC--C--------CC--CceE
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADN-LKYIAGDMFQ--F--------IP--PADA 179 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~r-v~~~~~d~~~--~--------~p--~~D~ 179 (283)
++...+||-+|+| .|.++...++++-..++++.|+ ++.++.|++ +.. +......- + . .. .+|+
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~-~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKS-SPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccc-cHHHHHHHHHhhccccCCCe
Confidence 5667899999999 5888888899999999999999 888988887 222 22222211 1 1 11 2788
Q ss_pred EEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 180 FLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 180 v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
.+-+..++ ..++....++++ ||.++++....+.
T Consensus 246 ~~dCsG~~--------~~~~aai~a~r~---gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 246 TFDCSGAE--------VTIRAAIKATRS---GGTVVLVGMGAEE 278 (354)
T ss_pred EEEccCch--------HHHHHHHHHhcc---CCEEEEeccCCCc
Confidence 88887765 446667889998 7998888765443
No 295
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=87.30 E-value=0.76 Score=38.71 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=25.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHCC--------CCeEEEeech
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFP--------GIKCTVLDLP 151 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p--------~~~~~~~D~~ 151 (283)
.-+|+|+|+|+|.++..+++... .++++.++.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~S 59 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEIS 59 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TT
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCC
Confidence 36999999999999999988654 3589999974
No 296
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=87.19 E-value=1.6 Score=36.58 Aligned_cols=95 Identities=22% Similarity=0.354 Sum_probs=50.8
Q ss_pred CCeEEEEcCCccHHHHHH---HHHC--CCCeEEEeec----hHHHh---------------------------cCCC---
Q 023384 119 LGSLVDVGGGNGSLSRII---SEAF--PGIKCTVLDL----PHVVA---------------------------NLPE--- 159 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l---~~~~--p~~~~~~~D~----~~~~~---------------------------~a~~--- 159 (283)
...|++.|+-.|..++.+ ++.+ ++-++.++|. |+.-. ...+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 379999999998766544 4443 4556888884 22211 0001
Q ss_pred -CCCeEEEEcCCCCCCCC--ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 160 -ADNLKYIAGDMFQFIPP--ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 160 -~~rv~~~~~d~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.+++.++.|.|.+.+|. -+-|-+.++=-++-+. ....|+.++..|.| |.++|+|
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYes-T~~aLe~lyprl~~----GGiIi~D 211 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYES-TKDALEFLYPRLSP----GGIIIFD 211 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHH-HHHHHHHHGGGEEE----EEEEEES
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEeccchHH-HHHHHHHHHhhcCC----CeEEEEe
Confidence 36899999999774442 1222222221133333 57789999999999 5555555
No 297
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=87.00 E-value=12 Score=29.31 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=72.6
Q ss_pred EcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC------CCCceEEEecccccCCChhHHH
Q 023384 125 VGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF------IPPADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 125 vGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~------~p~~D~v~~~~vlh~~~d~~~~ 195 (283)
|=||+|..+..+++.. .+.+++++-. ++-.+. ..+++++.+|++++ +.++|+++..-.- ..++ .
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~--~~~~--~ 75 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP--PPKD--V 75 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS--TTTH--H
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh--hccc--c
Confidence 3467888777776654 3467877776 554444 57899999999983 2358888776532 1222 4
Q ss_pred HHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 196 KILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 196 ~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
...+++.++++.++ -.+++++....-...... ...+.. ............+.++.+++.|+..+-+++.
T Consensus 76 ~~~~~~~~a~~~~~-~~~~v~~s~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~ivrp~ 144 (183)
T PF13460_consen 76 DAAKNIIEAAKKAG-VKRVVYLSSAGVYRDPPG------LFSDED-KPIFPEYARDKREAEEALRESGLNWTIVRPG 144 (183)
T ss_dssp HHHHHHHHHHHHTT-SSEEEEEEETTGTTTCTS------EEEGGT-CGGGHHHHHHHHHHHHHHHHSTSEEEEEEES
T ss_pred cccccccccccccc-cccceeeeccccCCCCCc------cccccc-ccchhhhHHHHHHHHHHHHhcCCCEEEEECc
Confidence 56677777776521 235555443332211110 000000 0000111223446678888899876655553
No 298
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=86.68 E-value=5.8 Score=29.48 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=34.6
Q ss_pred HHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCCc
Q 023384 196 KILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGM 275 (283)
Q Consensus 196 ~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 275 (283)
.+++++++.++| ||.+.-.. ....+++-|.++||.+.+....++=
T Consensus 71 e~~~~l~~~~~~---~~~l~Tys--------------------------------~a~~Vr~~L~~aGF~v~~~~g~g~K 115 (124)
T PF05430_consen 71 ELFKKLARLSKP---GGTLATYS--------------------------------SAGAVRRALQQAGFEVEKVPGFGRK 115 (124)
T ss_dssp HHHHHHHHHEEE---EEEEEES----------------------------------BHHHHHHHHHCTEEEEEEE-STTS
T ss_pred HHHHHHHHHhCC---CcEEEEee--------------------------------chHHHHHHHHHcCCEEEEcCCCCCc
Confidence 689999999999 55442211 1245788999999998766554444
Q ss_pred ceEEEEeC
Q 023384 276 RFLIEIYP 283 (283)
Q Consensus 276 ~~~i~~~~ 283 (283)
.-.+.|+|
T Consensus 116 r~~~~a~~ 123 (124)
T PF05430_consen 116 REMLRAVK 123 (124)
T ss_dssp SEEEEEEC
T ss_pred chheEEEc
Confidence 45555543
No 299
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=85.43 E-value=1 Score=40.66 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=54.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CC-CC--ceEEEeccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FI-PP--ADAFLFKLV 185 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~-p~--~D~v~~~~v 185 (283)
+...|||||.|||.++...+++.-+ .++.++. .++.+.|++ +++|+++.---.+ .+ |. +|++....+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 4467999999999999988888644 5888877 666666654 6777766543333 22 22 565544333
Q ss_pred ccCCChhHHHHHHHHHHHhhc
Q 023384 186 FHGLGDEDGLKILKKRRAAIA 206 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~ 206 (283)
.-.+--+-+..-++.+++.|-
T Consensus 145 dtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhccccchhHHHHHHHhc
Confidence 333333334455666666553
No 300
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.39 E-value=3 Score=37.01 Aligned_cols=93 Identities=20% Similarity=0.230 Sum_probs=65.5
Q ss_pred CeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--C-CCeEEEEcC-CC----C-CCC-CceEEEeccccc
Q 023384 120 GSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPE--A-DNLKYIAGD-MF----Q-FIP-PADAFLFKLVFH 187 (283)
Q Consensus 120 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~-~rv~~~~~d-~~----~-~~p-~~D~v~~~~vlh 187 (283)
.+|+=+|+|. |.++..+++.+...++++.|. ++-++.|++ . +.+.....+ .- + .-+ .+|+++-..-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 3899999994 777788899998899999999 888888876 2 222221121 00 1 112 4899887665
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
....+..+.++++| ||++.++-....+
T Consensus 248 ------~~~~~~~ai~~~r~---gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALRP---GGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhcC---CCEEEEEeccCCc
Confidence 12468889999999 8999988876555
No 301
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=85.13 E-value=3.8 Score=35.08 Aligned_cols=82 Identities=20% Similarity=0.087 Sum_probs=54.2
Q ss_pred CeEEEEcCC--ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEE-EcCC-CCCCCCceEEEecccccCCChhHH
Q 023384 120 GSLVDVGGG--NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYI-AGDM-FQFIPPADAFLFKLVFHGLGDEDG 194 (283)
Q Consensus 120 ~~vlDvGgG--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~-~~d~-~~~~p~~D~v~~~~vlh~~~d~~~ 194 (283)
.+|+=+|.| -|.++..+.++.+...+++.|. ......+.+. .+... ..+. ......+|+|+++- |-...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~d~~~~~~~~~~~~~aD~Vivav-----Pi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVIDELTVAGLAEAAAEADLVIVAV-----PIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-CcccccccchhhhhcccCCEEEEec-----cHHHH
Confidence 466777766 4667777777777778899998 5556655532 22221 2233 22445689999966 44567
Q ss_pred HHHHHHHHHhhcc
Q 023384 195 LKILKKRRAAIAS 207 (283)
Q Consensus 195 ~~iL~~~~~~L~p 207 (283)
..+++++...|++
T Consensus 78 ~~~l~~l~~~l~~ 90 (279)
T COG0287 78 EEVLKELAPHLKK 90 (279)
T ss_pred HHHHHHhcccCCC
Confidence 7889999999998
No 302
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=84.93 E-value=1.7 Score=34.32 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=33.7
Q ss_pred ceEEEecccccCCCh----------hHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 177 ADAFLFKLVFHGLGD----------EDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d----------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
.|||+++++||+++. +...+++.+++++|+| +.++|..+..|-
T Consensus 51 ~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~----~allIW~tt~Pv 103 (183)
T cd01842 51 LDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI----ECLIVWNTAMPV 103 (183)
T ss_pred eeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC----ccEEEEecCCCC
Confidence 699999999999875 4567788888888888 566776666553
No 303
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=84.72 E-value=2.1 Score=30.24 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=49.2
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccc-c-cCCcc-------CCHHH
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV-N-ATGKE-------RTESE 254 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-------~t~~e 254 (283)
.+|=|++.++..++|+++...-+ +++++. +.|.+. .+.+...+ . +.+.. ..+++
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t~-----~~~ifT--fAP~T~----------~L~~m~~iG~lFP~~dRsp~i~~~~e~~ 65 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRTR-----GSLIFT--FAPRTP----------LLALMHAIGKLFPRPDRSPRIYPHREED 65 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhcc-----CcEEEE--ECCCCH----------HHHHHHHHhccCCCCCCCCcEEEeCHHH
Confidence 34556889999999999887765 454442 122211 11111111 0 22222 26789
Q ss_pred HHHHHHHCCCCeeeEEEcC-Cc--ceEEEEeC
Q 023384 255 WAKLFFDACFSHYKITPIF-GM--RFLIEIYP 283 (283)
Q Consensus 255 ~~~ll~~aGf~~~~~~~~~-~~--~~~i~~~~ 283 (283)
+.+.++++||++.+...+. ++ ..++|+++
T Consensus 66 l~~~l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 66 LRRALAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred HHHHHHhCCCeeeecccccCcChHHHHhhccC
Confidence 9999999999988876663 32 45666654
No 304
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=84.33 E-value=1.7 Score=34.82 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=55.6
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------------CCCeEEEEcCCCCCCCCceEE
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------------------ADNLKYIAGDMFQFIPPADAF 180 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------------~~rv~~~~~d~~~~~p~~D~v 180 (283)
+|-=+|.|.=.+..+++-+-.+.+++++|. ++.++..++ ..|..+. -|+.+.+..+|++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~~adv~ 80 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIKDADVV 80 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHHH-SEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhhccceE
Confidence 466677776555555544445789999999 766655442 2333332 2222223357888
Q ss_pred EecccccCCC-----hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 181 LFKLVFHGLG-----DEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 181 ~~~~vlh~~~-----d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
+++----.-. -....+.++.+.+.+++ +.++|++...+..
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~----~~lvV~~STvppG 125 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRP----GDLVVIESTVPPG 125 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCS----CEEEEESSSSSTT
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhh----cceEEEccEEEEe
Confidence 7754211111 12356789999999998 8899988776654
No 305
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=83.94 E-value=5 Score=34.76 Aligned_cols=84 Identities=14% Similarity=0.047 Sum_probs=47.2
Q ss_pred CCeEEEEcCCc-c-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHH
Q 023384 119 LGSLVDVGGGN-G-SLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 119 ~~~vlDvGgG~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~ 195 (283)
..+|.=||+|. | .++..+.+.....+++++|. ++..+.+++..-......+..+...++|+|+++- +.....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHHH
Confidence 36788898775 2 23333443322247889998 6666555431111111112111234589988865 344456
Q ss_pred HHHHHHHHhhcc
Q 023384 196 KILKKRRAAIAS 207 (283)
Q Consensus 196 ~iL~~~~~~L~p 207 (283)
.+++.+...+++
T Consensus 81 ~v~~~l~~~l~~ 92 (307)
T PRK07502 81 AVAAEIAPHLKP 92 (307)
T ss_pred HHHHHHHhhCCC
Confidence 778888888887
No 306
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=83.34 E-value=6.1 Score=28.42 Aligned_cols=81 Identities=30% Similarity=0.396 Sum_probs=48.0
Q ss_pred CCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC--C-----CCceEEEecccccCCChhHHHH
Q 023384 127 GGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF--I-----PPADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 127 gG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~--~-----p~~D~v~~~~vlh~~~d~~~~~ 196 (283)
||.|.++..+++.+ ...+++++|. ++.++.+.+ ..+.++.||..++ + ..++.+++..- +|+....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-EGVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-TTSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-cccccccccchhhhHHhhcCccccCEEEEccC----CHHHHHH
Confidence 45566777666654 3457999999 777777664 3388999999983 1 24777666432 4444444
Q ss_pred HHHHHHHhhccCCCCcEEEE
Q 023384 197 ILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 197 iL~~~~~~L~p~~~gg~lli 216 (283)
+...+ +.+.| ..+++.
T Consensus 79 ~~~~~-r~~~~---~~~ii~ 94 (116)
T PF02254_consen 79 IALLA-RELNP---DIRIIA 94 (116)
T ss_dssp HHHHH-HHHTT---TSEEEE
T ss_pred HHHHH-HHHCC---CCeEEE
Confidence 44444 44455 355443
No 307
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.07 E-value=4.8 Score=34.40 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=47.1
Q ss_pred eEEEEcCCc--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHH
Q 023384 121 SLVDVGGGN--GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKI 197 (283)
Q Consensus 121 ~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~i 197 (283)
+|.=||+|. |.++..+.++ +.+++++|. ++.++.+.+...+.....+. +...++|+|+++- +.....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILAL-----PIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcC-----CHHHHHHH
Confidence 456677663 3444444443 568899998 66666554322221111111 1233589998864 56667788
Q ss_pred HHHHHHhhcc
Q 023384 198 LKKRRAAIAS 207 (283)
Q Consensus 198 L~~~~~~L~p 207 (283)
++++...+++
T Consensus 74 ~~~l~~~l~~ 83 (279)
T PRK07417 74 SEQLIPALPP 83 (279)
T ss_pred HHHHHHhCCC
Confidence 9999888887
No 308
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=82.09 E-value=1.1 Score=38.47 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCCCCCC------C-ceEEEecc-cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee--cCCCccchh
Q 023384 160 ADNLKYIAGDMFQFIP------P-ADAFLFKL-VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV--INAEEEEHE 229 (283)
Q Consensus 160 ~~rv~~~~~d~~~~~p------~-~D~v~~~~-vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~--~~~~~~~~~ 229 (283)
.-+|.|++.|....++ + ||++++++ ..|.+.++ +.++|+| +.++|+|.. +-+...+.
T Consensus 199 ~vkVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~----~A~LvvEtaKfmvdLrKEq- 265 (289)
T PF14740_consen 199 NVKVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAP----DAVLVVETAKFMVDLRKEQ- 265 (289)
T ss_pred CcEEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCC----CCEEEEEcchhheeCCHHH-
Confidence 3567788887766443 2 89887644 66666654 6668898 566777753 11221110
Q ss_pred hhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeee
Q 023384 230 LTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 268 (283)
..--.+.+.+++++|||+.+.
T Consensus 266 ------------------~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 266 ------------------LQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred ------------------HHHHHHHHHHHHHHCCCcccc
Confidence 011256789999999998764
No 309
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.80 E-value=9.6 Score=34.27 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=46.8
Q ss_pred CeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCCC------CCCceEEEecc
Q 023384 120 GSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQF------IPPADAFLFKL 184 (283)
Q Consensus 120 ~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~~------~p~~D~v~~~~ 184 (283)
.+||=|||| -|......+.+.-+.++++.|. ++..+.+.. ..+++..+.|..+. +.++|+++..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 478899985 4555555555666689999999 677777654 45899999999883 23578887754
No 310
>PTZ00357 methyltransferase; Provisional
Probab=80.74 E-value=7.8 Score=37.36 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=75.3
Q ss_pred chhhHhhcCccHHHHHHHHhhhhhhhhHH------------HH------HHHhhhh-h-cCCCCeEEEEcCCccHHHHHH
Q 023384 77 KFWEFMNQNPGINQRFNEAMASDTEILTS------------FV------VKAECKQ-I-FEGLGSLVDVGGGNGSLSRII 136 (283)
Q Consensus 77 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~------------~~------~~~~~~~-~-~~~~~~vlDvGgG~G~~~~~l 136 (283)
..||.+++++-.-..|.+++.....-... .+ ++ ..+. . -.....|+-+|+|.|-+....
T Consensus 640 ~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~md-rvp~~~~d~~~vVImVVGAGRGPLVdra 718 (1072)
T PTZ00357 640 GVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQ-RVPVPSPDERTLHLVLLGCGRGPLIDEC 718 (1072)
T ss_pred hhHHHHcCCcHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccc-ccccccCCCceEEEEEEcCCccHHHHHH
Confidence 45788888887777777776654321100 00 00 0000 0 011135899999999998887
Q ss_pred HHHCC----CCeEEEeec-hHHH----hcC-C--C--------CCCeEEEEcCCCC-CCC-------------CceEEEe
Q 023384 137 SEAFP----GIKCTVLDL-PHVV----ANL-P--E--------ADNLKYIAGDMFQ-FIP-------------PADAFLF 182 (283)
Q Consensus 137 ~~~~p----~~~~~~~D~-~~~~----~~a-~--~--------~~rv~~~~~d~~~-~~p-------------~~D~v~~ 182 (283)
+++.. .++++.++- |+.+ ..- + . +++|+++..|+.+ ..+ .+|+++.
T Consensus 719 LrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 719 LHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVS 798 (1072)
T ss_pred HHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehH
Confidence 77654 456777777 4521 111 1 1 3579999999988 322 3787764
Q ss_pred cccccCCChhH-HHHHHHHHHHhhcc
Q 023384 183 KLVFHGLGDED-GLKILKKRRAAIAS 207 (283)
Q Consensus 183 ~~vlh~~~d~~-~~~iL~~~~~~L~p 207 (283)
-.|--|.|++ ..+.|..+.+.||+
T Consensus 799 -ELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 799 -ELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred -hhhcccccccCCHHHHHHHHHhhhh
Confidence 4455566643 34556666666663
No 311
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=80.59 E-value=3.6 Score=36.56 Aligned_cols=37 Identities=35% Similarity=0.728 Sum_probs=31.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHH
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHV 153 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~ 153 (283)
+.+...++|+|.|.|+++..+.-.| ++.+.++|-...
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~ 187 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQR 187 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchH
Confidence 6678899999999999999887766 788999997443
No 312
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=79.09 E-value=2.4 Score=32.82 Aligned_cols=87 Identities=18% Similarity=0.271 Sum_probs=50.3
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEEcCCCCCCCCceEEEecccc
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------------ADNLKYIAGDMFQFIPPADAFLFKLVF 186 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~~p~~D~v~~~~vl 186 (283)
+|.=+|+|.+..+.+..-..-..++++... ++.++..++ ..++.+ .-|+.+-+.++|++++.-
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~Iiiav-- 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIAV-- 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE-S--
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEecc--
Confidence 366788888777766544444568888887 454433221 123322 333333344689888743
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
+-.....+++++...+++ +..+|.
T Consensus 78 ---Ps~~~~~~~~~l~~~l~~----~~~ii~ 101 (157)
T PF01210_consen 78 ---PSQAHREVLEQLAPYLKK----GQIIIS 101 (157)
T ss_dssp ----GGGHHHHHHHHTTTSHT----T-EEEE
T ss_pred ---cHHHHHHHHHHHhhccCC----CCEEEE
Confidence 444456889999999987 554443
No 313
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=79.01 E-value=17 Score=28.16 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCccHHHH--HHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCC-CCCCceEEEec
Q 023384 118 GLGSLVDVGGGNGSLSR--IISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQ-FIPPADAFLFK 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~--~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~v~~~ 183 (283)
...+||=||||.=..-. .|++. +.++++++ |+..+...+...+++....+.+ ++.++|+++..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaa 77 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAA 77 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEEC
Confidence 45889999998655433 34443 55666665 3322222223456666666665 56678988884
No 314
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=78.35 E-value=12 Score=35.06 Aligned_cols=94 Identities=11% Similarity=0.152 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC--------------C--------
Q 023384 118 GLGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ--------------F-------- 173 (283)
Q Consensus 118 ~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~--------------~-------- 173 (283)
...+|+=+|+|. |..++..++..- .+++++|. ++..+.+++- ..++...|..+ +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 467999999985 666667777764 58999999 8888777651 11221111100 1
Q ss_pred ----CCCceEEEecccccCCChhHHHHH-HHHHHHhhccCCCCcEEEEEee
Q 023384 174 ----IPPADAFLFKLVFHGLGDEDGLKI-LKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 174 ----~p~~D~v~~~~vlh~~~d~~~~~i-L~~~~~~L~p~~~gg~lli~d~ 219 (283)
...+|+++-..-. +...+..+ .+...+.||| ||.++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mkp---GgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALI---PGKPAPKLITAEMVASMKP---GSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCC---CcccCcchHHHHHHHhcCC---CCEEEEEcc
Confidence 1348999886643 22212244 5999999999 787666543
No 315
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=77.68 E-value=7.3 Score=35.33 Aligned_cols=103 Identities=16% Similarity=0.240 Sum_probs=67.9
Q ss_pred CCeEEEEc-CCccH------HHHHHHHHCCCCeEEEeec--hHHHhcCCC---CCCeEEEEcCCCC-CC-----------
Q 023384 119 LGSLVDVG-GGNGS------LSRIISEAFPGIKCTVLDL--PHVVANLPE---ADNLKYIAGDMFQ-FI----------- 174 (283)
Q Consensus 119 ~~~vlDvG-gG~G~------~~~~l~~~~p~~~~~~~D~--~~~~~~a~~---~~rv~~~~~d~~~-~~----------- 174 (283)
...|+=+| -|+|- ++..+.++....=.+..|. |..+++.+. .-+|.|..-+-.. |.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak 179 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK 179 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHH
Confidence 35677776 24443 3344444333344678887 888777665 4556665543333 42
Q ss_pred -CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 175 -PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 175 -p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
..+|+++.--.=.+.-|++...-+++++++++| .-.++|+|....-.
T Consensus 180 ~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P---~E~llVvDam~GQd 227 (451)
T COG0541 180 EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINP---DETLLVVDAMIGQD 227 (451)
T ss_pred HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCC---CeEEEEEecccchH
Confidence 127999986655555688889999999999999 58999999776543
No 316
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=77.52 E-value=7.6 Score=31.59 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=41.1
Q ss_pred CCeEEEEcCCccHHHHH--HHHHCCCCeEEEeec--hHHHhcCCCCCCeEEEEcCCCC-CCCCceEEEec
Q 023384 119 LGSLVDVGGGNGSLSRI--ISEAFPGIKCTVLDL--PHVVANLPEADNLKYIAGDMFQ-FIPPADAFLFK 183 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~--l~~~~p~~~~~~~D~--~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~v~~~ 183 (283)
..+||=||||.-..... |++ -+.++++++. .+.+....+..+++++.+++.. ++.++|+|+..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEEC
Confidence 46999999997655433 333 3567777764 2223222224589999998876 56678888874
No 317
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=77.07 E-value=13 Score=30.69 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=42.9
Q ss_pred CCCeEEEEcCCccHHHHH--HHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCCCceEEEecc
Q 023384 118 GLGSLVDVGGGNGSLSRI--ISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIPPADAFLFKL 184 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~v~~~~ 184 (283)
...+||=||||.-..-.. |++.-..++++.-++ ++..+.++ .++++++..++.. ++.++++|+..-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~-~~~i~~~~r~~~~~dl~g~~LViaAT 93 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK-YGNLKLIKGNYDKEFIKDKHLIVIAT 93 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh-CCCEEEEeCCCChHHhCCCcEEEECC
Confidence 457899999998876643 444433444444466 44444333 5789999988876 566788887753
No 318
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=76.99 E-value=10 Score=27.72 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=53.8
Q ss_pred CccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC---C----CC--CceEEEecccccCCChhHHHHH
Q 023384 128 GNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ---F----IP--PADAFLFKLVFHGLGDEDGLKI 197 (283)
Q Consensus 128 G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~----~p--~~D~v~~~~vlh~~~d~~~~~i 197 (283)
|.|..+..+++... .++++.|. +.-.+.+++..--.++..+-.+ . .+ .+|+++-+-- . ...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~---~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----S---GDT 71 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----S---HHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----c---HHH
Confidence 45888899999887 99999998 5566666542211222222111 1 12 3888877543 1 256
Q ss_pred HHHHHHhhccCCCCcEEEEEeeec
Q 023384 198 LKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 198 L~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
++...+++++ +|+++++-...
T Consensus 72 ~~~~~~~l~~---~G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRP---GGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEE---EEEEEEESSTS
T ss_pred HHHHHHHhcc---CCEEEEEEccC
Confidence 8889999999 79998887665
No 319
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.80 E-value=14 Score=32.21 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=69.1
Q ss_pred EEEEcCCccHHHHHHHHHCCCCeEE-Eeec-hHHHhcCCC-CCCeEEEEcCCCC-C---CCCceEEEecccccCCC----
Q 023384 122 LVDVGGGNGSLSRIISEAFPGIKCT-VLDL-PHVVANLPE-ADNLKYIAGDMFQ-F---IPPADAFLFKLVFHGLG---- 190 (283)
Q Consensus 122 vlDvGgG~G~~~~~l~~~~p~~~~~-~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~---~p~~D~v~~~~vlh~~~---- 190 (283)
|+|+=||.|.++..+.++ +.+++ ..|+ +..++..+. -.. .+..+|+.+ . +|+.|+++..-....|+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 589999999999999877 46654 5787 444443322 111 345567665 2 45688888765555544
Q ss_pred ----hhHHHHHHHHHHHh---hccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 191 ----DEDGLKILKKRRAA---IASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 191 ----d~~~~~iL~~~~~~---L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
++..-.++..+.+. ++| +++++|.+..-.. ........++.+.|++.|
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P-----~~~v~ENV~~l~~--------------------~~~~~~~~~i~~~l~~~G 132 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKP-----KFFLLENVKGLVS--------------------HDKGRTFKVIIETLEELG 132 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCC-----CEEEeeccHHHHh--------------------cccchHHHHHHHHHHhCC
Confidence 11222344444444 455 6777775542100 011234577888889999
Q ss_pred CCee
Q 023384 264 FSHY 267 (283)
Q Consensus 264 f~~~ 267 (283)
+.+.
T Consensus 133 Y~v~ 136 (315)
T TIGR00675 133 YKVY 136 (315)
T ss_pred CEEE
Confidence 8764
No 320
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=76.57 E-value=28 Score=28.07 Aligned_cols=103 Identities=16% Similarity=0.165 Sum_probs=67.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHH---C-CCCeEEEeechHH--HhcCCCCCCeEEEEcCCCCC-C--C------C-ceEEE
Q 023384 118 GLGSLVDVGGGNGSLSRIISEA---F-PGIKCTVLDLPHV--VANLPEADNLKYIAGDMFQF-I--P------P-ADAFL 181 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~---~-p~~~~~~~D~~~~--~~~a~~~~rv~~~~~d~~~~-~--p------~-~D~v~ 181 (283)
....|+++|.-.|..++-++.. . -..+++++|+.-. -..|.+..+|.|+.|+-.+| + + . --+..
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 3478999997777666554442 2 2367888887322 23344478999999998874 1 1 1 24555
Q ss_pred ecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCc
Q 023384 182 FKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEE 225 (283)
Q Consensus 182 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~ 225 (283)
+-..-| +-+.....|+-..+.|.- |..+++.|...++-.
T Consensus 149 ilDsdH--s~~hvLAel~~~~pllsa---G~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDH--SMEHVLAELKLLAPLLSA---GDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCc--hHHHHHHHHHHhhhHhhc---CceEEEecccccCCC
Confidence 555555 445566778888888887 788888887776654
No 321
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=76.28 E-value=37 Score=29.75 Aligned_cols=93 Identities=14% Similarity=0.186 Sum_probs=54.3
Q ss_pred CCCCeEEEEcCC-ccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhH
Q 023384 117 EGLGSLVDVGGG-NGSLSRIISEA-FPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDED 193 (283)
Q Consensus 117 ~~~~~vlDvGgG-~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~ 193 (283)
....+||=+|+| .|.++..++++ ....++++.|. ++-++.+++.+.. ....+. .....+|+++=.-- ...
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~-~~~~~~-~~~~g~d~viD~~G-----~~~ 234 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET-YLIDDI-PEDLAVDHAFECVG-----GRG 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce-eehhhh-hhccCCcEEEECCC-----CCc
Confidence 456789988854 45566666775 55678888887 6566655442221 111111 11113787764321 100
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 194 GLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 194 ~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
....+....+.|++ ||+++++-.
T Consensus 235 ~~~~~~~~~~~l~~---~G~iv~~G~ 257 (341)
T cd08237 235 SQSAINQIIDYIRP---QGTIGLMGV 257 (341)
T ss_pred cHHHHHHHHHhCcC---CcEEEEEee
Confidence 12457788889999 799988764
No 322
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=73.08 E-value=53 Score=28.27 Aligned_cols=85 Identities=15% Similarity=0.056 Sum_probs=51.7
Q ss_pred CCeEEEEcC-CccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCC-CceEEEecccccCCChhHHH
Q 023384 119 LGSLVDVGG-GNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIP-PADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 119 ~~~vlDvGg-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p-~~D~v~~~~vlh~~~d~~~~ 195 (283)
..++|=+|+ +.|.++..+++......++++|. ++.++.+... .+ .|..+..+ .+|+++=..- . .
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~--i~~~~~~~~g~Dvvid~~G-----~---~ 211 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EV--LDPEKDPRRDYRAIYDASG-----D---P 211 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cc--cChhhccCCCCCEEEECCC-----C---H
Confidence 457887784 56778888888875444667777 5555554421 11 12111112 4788775432 1 1
Q ss_pred HHHHHHHHhhccCCCCcEEEEEee
Q 023384 196 KILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 196 ~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
..+..+.+.|++ +|+++++-.
T Consensus 212 ~~~~~~~~~l~~---~G~iv~~G~ 232 (308)
T TIGR01202 212 SLIDTLVRRLAK---GGEIVLAGF 232 (308)
T ss_pred HHHHHHHHhhhc---CcEEEEEee
Confidence 456778889999 799988764
No 323
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=72.73 E-value=3.1 Score=35.40 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHH
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVV 154 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~ 154 (283)
..++|||+|||+|...+...... ..++..+|. .+++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVL 152 (282)
T ss_pred cCceeEecCCcccccchhhhhhc-cceeeeEecchhhe
Confidence 45899999999999998776663 267777787 5555
No 324
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=72.34 E-value=26 Score=32.54 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=60.0
Q ss_pred CeEEEEcCCccHHHHHHHHH--CCCCeEEEeec-hHHHhcCCCC-----------------C-CeEEEEcCCCCCCCCce
Q 023384 120 GSLVDVGGGNGSLSRIISEA--FPGIKCTVLDL-PHVVANLPEA-----------------D-NLKYIAGDMFQFIPPAD 178 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-----------------~-rv~~~~~d~~~~~p~~D 178 (283)
.+|.=||.|...+..+.+-+ -++.+++++|. ++.++..++. . ++. ...|+.+.+..+|
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~~i~~ad 80 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEKHVAEAD 80 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHHHHhcCC
Confidence 35777888876666554333 34678999999 7777664320 1 111 1222222234578
Q ss_pred EEEecc--ccc--------CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 179 AFLFKL--VFH--------GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 179 ~v~~~~--vlh--------~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
+++++- .+- ..+-.......+.+.+.|++ |.++|++...+..
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~----~~lVv~~STvp~G 132 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS----DKIVVEKSTVPVK 132 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC----CcEEEEeCCCCCC
Confidence 887753 210 11223567788889999987 7888888776654
No 325
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=72.02 E-value=15 Score=31.90 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=56.7
Q ss_pred CeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC---CCCCceEEEecccccCCChh
Q 023384 120 GSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ---FIPPADAFLFKLVFHGLGDE 192 (283)
Q Consensus 120 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~---~~p~~D~v~~~~vlh~~~d~ 192 (283)
.+|+=||||. |..+..++.- =+.+++.+|+ .+.+..... ..|+...-.+... ..+.+|+++-.-.+---..+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaP 247 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAP 247 (371)
T ss_pred ccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCc
Confidence 5788899884 5556555543 3678999999 666666655 6777776665544 35579998775544322223
Q ss_pred HHHHHHHHHHHhhcc
Q 023384 193 DGLKILKKRRAAIAS 207 (283)
Q Consensus 193 ~~~~iL~~~~~~L~p 207 (283)
. -+.++..+.|||
T Consensus 248 k--Lvt~e~vk~Mkp 260 (371)
T COG0686 248 K--LVTREMVKQMKP 260 (371)
T ss_pred e--ehhHHHHHhcCC
Confidence 2 347778999999
No 326
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=71.94 E-value=33 Score=28.09 Aligned_cols=94 Identities=15% Similarity=0.249 Sum_probs=52.2
Q ss_pred CCeEEEEcCCcc----HHHHHHHHHCCCCeEEEeec-hHHH----hcCCC---CCCeEEEEcCCCC----CCCCceEEEe
Q 023384 119 LGSLVDVGGGNG----SLSRIISEAFPGIKCTVLDL-PHVV----ANLPE---ADNLKYIAGDMFQ----FIPPADAFLF 182 (283)
Q Consensus 119 ~~~vlDvGgG~G----~~~~~l~~~~p~~~~~~~D~-~~~~----~~a~~---~~rv~~~~~d~~~----~~p~~D~v~~ 182 (283)
.+.||++.++.| .++.+.+.+..+-+.+.+-. ++.. +.... .+.++|+.|+-.+ .+.+.|.++.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence 367999965433 34444555556666544332 2221 11111 4567998887433 2345787766
Q ss_pred cccccCCChhHHH-HHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 183 KLVFHGLGDEDGL-KILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 183 ~~vlh~~~d~~~~-~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
|...++.. ++|+.+. +.| -|.+++......
T Consensus 122 -----Dc~~~d~~~~vl~~~~--~~~---~GaVVV~~Na~~ 152 (218)
T PF07279_consen 122 -----DCKREDFAARVLRAAK--LSP---RGAVVVCYNAFS 152 (218)
T ss_pred -----eCCchhHHHHHHHHhc--cCC---CceEEEEecccc
Confidence 44555555 6666433 444 478888776655
No 327
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.82 E-value=56 Score=27.00 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=44.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC--CeEEEeec--hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChh
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPG--IKCTVLDL--PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDE 192 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~--~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~ 192 (283)
+..+.||-.||..|...-+++++|.. ..++..-. ..+.+.+. ..++.....|.. +++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~-~~gl~~~kLDV~------------------~~~ 65 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI-QFGLKPYKLDVS------------------KPE 65 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH-hhCCeeEEeccC------------------ChH
Confidence 45678999999999999999998854 44443332 22222221 223333333322 456
Q ss_pred HHHHHHHHHHHhhccCCCCcEE
Q 023384 193 DGLKILKKRRAAIASNGERGKV 214 (283)
Q Consensus 193 ~~~~iL~~~~~~L~p~~~gg~l 214 (283)
+..+++..+++- | .|++
T Consensus 66 ~V~~v~~evr~~--~---~Gkl 82 (289)
T KOG1209|consen 66 EVVTVSGEVRAN--P---DGKL 82 (289)
T ss_pred HHHHHHHHHhhC--C---CCce
Confidence 677778877766 4 3665
No 328
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=71.74 E-value=3.3 Score=37.91 Aligned_cols=131 Identities=18% Similarity=0.321 Sum_probs=80.3
Q ss_pred CccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----
Q 023384 85 NPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---- 159 (283)
Q Consensus 85 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---- 159 (283)
.++..-.++..|.+...+....... . ......+|-||-|.|.+...+...+|..+.+++.+ |++++.+.+
T Consensus 267 ~~~l~s~~h~~m~~g~aL~~n~~~~-~----~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f 341 (482)
T KOG2352|consen 267 KPELASQYHQMMIGGLALIMNRPPQ-K----LDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGF 341 (482)
T ss_pred CcccCcchhhhhhccceeccccCch-h----ccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhch
Confidence 3444455666666554443322222 2 33446777788778999999999999999999999 999998875
Q ss_pred --CCCeEEEEcCCCC----C------CCCceEEEe----cccccCCC--h--hHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 160 --ADNLKYIAGDMFQ----F------IPPADAFLF----KLVFHGLG--D--EDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 160 --~~rv~~~~~d~~~----~------~p~~D~v~~----~~vlh~~~--d--~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
.+|..+.-.|-.+ . ...||+++. .. -|... . --+..+|..++.+|+| .| ++++..
T Consensus 342 ~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p---~g-~f~inl 416 (482)
T KOG2352|consen 342 MQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPP---RG-MFIINL 416 (482)
T ss_pred hhhhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCc---cc-eEEEEE
Confidence 2333333322222 1 113888776 22 33332 1 1246789999999999 34 456666
Q ss_pred ecCCCc
Q 023384 220 VINAEE 225 (283)
Q Consensus 220 ~~~~~~ 225 (283)
+..+..
T Consensus 417 v~r~~~ 422 (482)
T KOG2352|consen 417 VTRNSS 422 (482)
T ss_pred ecCCcc
Confidence 555544
No 329
>PRK08507 prephenate dehydrogenase; Validated
Probab=71.50 E-value=12 Score=31.80 Aligned_cols=79 Identities=18% Similarity=0.057 Sum_probs=45.4
Q ss_pred eEEEEcCCc--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHH
Q 023384 121 SLVDVGGGN--GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKI 197 (283)
Q Consensus 121 ~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~i 197 (283)
+|.=||+|. +.++..+.++....++++.|. ++..+.+.+..-+.. ..+.. +...+|+|+++- ++.....+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~-~~~~~-~~~~aD~Vilav-----p~~~~~~~ 74 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDE-IVSFE-ELKKCDVIFLAI-----PVDAIIEI 74 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcc-cCCHH-HHhcCCEEEEeC-----cHHHHHHH
Confidence 456677664 344455554433457888898 665555443221111 11211 122489988854 66777888
Q ss_pred HHHHHHhhcc
Q 023384 198 LKKRRAAIAS 207 (283)
Q Consensus 198 L~~~~~~L~p 207 (283)
++.+.. +++
T Consensus 75 ~~~l~~-l~~ 83 (275)
T PRK08507 75 LPKLLD-IKE 83 (275)
T ss_pred HHHHhc-cCC
Confidence 888888 887
No 330
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=71.45 E-value=5.4 Score=34.22 Aligned_cols=56 Identities=9% Similarity=0.063 Sum_probs=46.1
Q ss_pred CCCeEEEEcCCCC-----CCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 160 ADNLKYIAGDMFQ-----FIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 160 ~~rv~~~~~d~~~-----~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
..||.++.+|+.+ |..+.|-|++..+=..++|.++..++.++.+-+.+ |.++++-.
T Consensus 306 ~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~---gA~VifRt 366 (414)
T COG5379 306 LRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEA---GARVIFRT 366 (414)
T ss_pred hhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCC---CcEEEEec
Confidence 6789999999876 23358999999988888999999999999999999 56665533
No 331
>PRK13699 putative methylase; Provisional
Probab=69.92 E-value=25 Score=29.04 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=0.0
Q ss_pred eEEEEcCCCC---CCCC--ceEEEec-------------ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 163 LKYIAGDMFQ---FIPP--ADAFLFK-------------LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 163 v~~~~~d~~~---~~p~--~D~v~~~-------------~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
+++..||..+ .+|+ .|+|+.. .+-.+...+-....+++++++||| ||.+++.-...
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKp---gg~l~if~~~~--- 75 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKK---DALMVSFYGWN--- 75 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCC---CCEEEEEeccc---
Q ss_pred ccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEE
Q 023384 225 EEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 270 (283)
....+..+++++||.....+
T Consensus 76 --------------------------~~~~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 76 --------------------------RVDRFMAAWKNAGFSVVGHL 95 (227)
T ss_pred --------------------------cHHHHHHHHHHCCCEEeeEE
No 332
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=69.47 E-value=15 Score=33.73 Aligned_cols=99 Identities=15% Similarity=0.081 Sum_probs=57.8
Q ss_pred CeEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC---CCC--C-ceEEEec
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPG--IKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ---FIP--P-ADAFLFK 183 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~---~~p--~-~D~v~~~ 183 (283)
..+.|+|.|.|.-.-++....++ -.++.+|. -.+...... ...+.....-|+. |.+ + ||++++.
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~a 281 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICA 281 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEee
Confidence 46888888776655555555555 34788887 344333221 1112111112333 332 3 9999999
Q ss_pred ccccCCChhH-HHHHHHHHH-HhhccCCCCcEEEEEeeec
Q 023384 184 LVFHGLGDED-GLKILKKRR-AAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 184 ~vlh~~~d~~-~~~iL~~~~-~~L~p~~~gg~lli~d~~~ 221 (283)
++||.+.... ...+.+..+ +..++ |+.++|++...
T Consensus 282 h~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g~ 318 (491)
T KOG2539|consen 282 HKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKGT 318 (491)
T ss_pred eeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecCC
Confidence 9999887543 333444444 45676 78999998643
No 333
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=66.48 E-value=7.8 Score=33.65 Aligned_cols=64 Identities=20% Similarity=0.330 Sum_probs=40.4
Q ss_pred CeEEEEcCC--ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------CCCeEEEEcCCCCCCCCceE
Q 023384 120 GSLVDVGGG--NGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------------ADNLKYIAGDMFQFIPPADA 179 (283)
Q Consensus 120 ~~vlDvGgG--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~rv~~~~~d~~~~~p~~D~ 179 (283)
.+|+-||.| .|-.+..++.++|+++++++|+ .+-+..-.. ..+--|...|+.+.+..+|+
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl 81 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL 81 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence 467888887 3556666788999999999998 444443321 11222444444444445888
Q ss_pred EEec
Q 023384 180 FLFK 183 (283)
Q Consensus 180 v~~~ 183 (283)
|+.+
T Consensus 82 vfis 85 (481)
T KOG2666|consen 82 VFIS 85 (481)
T ss_pred EEEE
Confidence 8764
No 334
>PTZ00117 malate dehydrogenase; Provisional
Probab=65.69 E-value=54 Score=28.68 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=37.8
Q ss_pred CCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeechH-HHh-------cCCC--CCCeEEEE-cCCCCCCCCceEEEecc
Q 023384 119 LGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDLPH-VVA-------NLPE--ADNLKYIA-GDMFQFIPPADAFLFKL 184 (283)
Q Consensus 119 ~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~~~-~~~-------~a~~--~~rv~~~~-~d~~~~~p~~D~v~~~~ 184 (283)
..+|.=||+|+ |.....++....-.+++++|+.+ ..+ .+.. ..+.++.. .|+. .+.++|+|+...
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 36899999988 66655555544435788999832 211 1111 22334443 3433 556789998865
No 335
>CHL00194 ycf39 Ycf39; Provisional
Probab=65.56 E-value=89 Score=26.95 Aligned_cols=61 Identities=23% Similarity=0.202 Sum_probs=38.4
Q ss_pred eEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC------CCCceEEEec
Q 023384 121 SLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF------IPPADAFLFK 183 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~------~p~~D~v~~~ 183 (283)
+|| |=||+|..+..++++. .+.++++++. ++...... ..+++++.+|+.++ +.+.|+|+..
T Consensus 2 kIl-VtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~-~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~ 71 (317)
T CHL00194 2 SLL-VIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK-EWGAELVYGDLSLPETLPPSFKGVTAIIDA 71 (317)
T ss_pred EEE-EECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh-hcCCEEEECCCCCHHHHHHHHCCCCEEEEC
Confidence 345 3467888888877664 3567888876 32222111 34689999999873 2347877753
No 336
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=64.81 E-value=70 Score=29.15 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=54.4
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEE-------------cCC--CCCCCCceEEEec
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIA-------------GDM--FQFIPPADAFLFK 183 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~-------------~d~--~~~~p~~D~v~~~ 183 (283)
.+|.=||.|.-....+.+-+--+.+++++|. ++.++..+. ..+.+.. |.. .++....|+|+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINR-GEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-CCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 5677888876555444333333578999999 666665332 1111100 000 0122357888775
Q ss_pred cccc-----CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 184 LVFH-----GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 184 ~vlh-----~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
---- ...-......++.+.+.+++ |.++|.....+.
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~----g~iVI~~STv~p 123 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKK----GDLVILESTSPV 123 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCC----CCEEEEeCCCCC
Confidence 4321 00113556677888899987 677777765543
No 337
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=64.12 E-value=15 Score=32.73 Aligned_cols=104 Identities=16% Similarity=0.150 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCC-CC--CC-ceEEEe--
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQ-FI--PP-ADAFLF-- 182 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~~--p~-~D~v~~-- 182 (283)
+..+++|++|+.+.....+++.|+-++-.++++ .+.+..+.. ...+.+..+|++. +. .. ++.+..
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 346899999999999999999999888777776 444433321 2234555555554 21 00 111111
Q ss_pred -----------------------cccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCcc
Q 023384 183 -----------------------KLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEE 226 (283)
Q Consensus 183 -----------------------~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~ 226 (283)
..+.-+|.+. ..++......++| +|.+++.+.+...+..
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~--~~~f~~~~~~~~~---~~~v~~~e~~~~~p~g 321 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLTRDTITHWQDK--SALFRGRVATLKP---GGKVLILEYIRGLPEG 321 (364)
T ss_pred chhhhhcccccCCCccccccccchhheeecccc--cHHHHhHhhccCc---CceEEehhhcCcCCcC
Confidence 1222233332 2457778888898 7888888877655443
No 338
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=64.12 E-value=8.6 Score=31.98 Aligned_cols=65 Identities=28% Similarity=0.434 Sum_probs=38.9
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcC--------CC--------CCCeEEEEcCCCC--CCC--CceE
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANL--------PE--------ADNLKYIAGDMFQ--FIP--PADA 179 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a--------~~--------~~rv~~~~~d~~~--~~p--~~D~ 179 (283)
.+|||.=+|-|.-+..++.. ++++++++..+++... .+ ..|++++.+|..+ ..+ .+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 48999999999999988765 6799999984443211 11 3589999999888 332 4999
Q ss_pred EEecccc
Q 023384 180 FLFKLVF 186 (283)
Q Consensus 180 v~~~~vl 186 (283)
|++-=.+
T Consensus 155 VY~DPMF 161 (234)
T PF04445_consen 155 VYFDPMF 161 (234)
T ss_dssp EEE--S-
T ss_pred EEECCCC
Confidence 9884433
No 339
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=64.09 E-value=26 Score=28.81 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=59.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC-C-eEEEeec-hHHHhcCCC----------------------------------
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPG-I-KCTVLDL-PHVVANLPE---------------------------------- 159 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~-~~~~~D~-~~~~~~a~~---------------------------------- 159 (283)
++..++-|--||+|.++..+.-.+++ + .+.+.|+ +++++.|++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 35578999999999999887776654 3 4788898 777765541
Q ss_pred --------------CCCeEEEEcCCCCCC-------C-CceEEEecc---cccCCC----hhHHHHHHHHHHHhhccCCC
Q 023384 160 --------------ADNLKYIAGDMFQFI-------P-PADAFLFKL---VFHGLG----DEDGLKILKKRRAAIASNGE 210 (283)
Q Consensus 160 --------------~~rv~~~~~d~~~~~-------p-~~D~v~~~~---vlh~~~----d~~~~~iL~~~~~~L~p~~~ 210 (283)
.......+.|+|++. + ..|+|+.-- -+-+|. .+-...+|..++++|.+
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~--- 206 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE--- 206 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T---
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC---
Confidence 123567788999842 1 268887733 233453 34578999999999954
Q ss_pred CcEEEE
Q 023384 211 RGKVII 216 (283)
Q Consensus 211 gg~lli 216 (283)
++.|.|
T Consensus 207 ~sVV~v 212 (246)
T PF11599_consen 207 RSVVAV 212 (246)
T ss_dssp T-EEEE
T ss_pred CcEEEE
Confidence 455555
No 340
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=63.71 E-value=32 Score=33.04 Aligned_cols=85 Identities=21% Similarity=0.287 Sum_probs=53.5
Q ss_pred eEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC-------CCCceEEEecccccCCC
Q 023384 121 SLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF-------IPPADAFLFKLVFHGLG 190 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~v~~~~vlh~~~ 190 (283)
+|+=+ |.|.++..+++.. .+.+++++|. |+.++.+++ .....+.||..++ ..++|+++... + +
T Consensus 402 ~vII~--G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~~--~--d 474 (601)
T PRK03659 402 QVIIV--GFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVITC--N--E 474 (601)
T ss_pred CEEEe--cCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEEe--C--C
Confidence 45555 4556666655543 3678999999 888887764 4577899999883 22478776633 1 3
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
++++..+...+++ +.| ..+++.
T Consensus 475 ~~~n~~i~~~~r~-~~p---~~~Iia 496 (601)
T PRK03659 475 PEDTMKIVELCQQ-HFP---HLHILA 496 (601)
T ss_pred HHHHHHHHHHHHH-HCC---CCeEEE
Confidence 4555566665555 555 356655
No 341
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=63.54 E-value=57 Score=25.12 Aligned_cols=51 Identities=25% Similarity=0.422 Sum_probs=30.8
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeechHH--HhcCCCCCCeEEEEcCCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHV--VANLPEADNLKYIAGDMFQ 172 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~--~~~a~~~~rv~~~~~d~~~ 172 (283)
.-|+|+|=|+|..=-.+.+.+|+-+++++|..-. -... .+.=.++.||+.+
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~--P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST--PPEEDLILGDIRE 82 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG-----GGGEEES-HHH
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC--CchHheeeccHHH
Confidence 7899999999999999999999999999996211 1111 1222467787776
No 342
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=62.34 E-value=51 Score=28.78 Aligned_cols=100 Identities=19% Similarity=0.150 Sum_probs=55.8
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHHCCCC-eEEEeec-hHHH-----h--cCCC-CCCeEEEEcCCCCCCCCceEEEecccc
Q 023384 118 GLGSLVDVGGGN-GSLSRIISEAFPGI-KCTVLDL-PHVV-----A--NLPE-ADNLKYIAGDMFQFIPPADAFLFKLVF 186 (283)
Q Consensus 118 ~~~~vlDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~-----~--~a~~-~~rv~~~~~d~~~~~p~~D~v~~~~vl 186 (283)
...+|.=||+|. |......+...+-. +.+++|+ .+.+ + .+.. ..++.+..+|+ +.+.++|++++..-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 446899999876 55544444444444 6889997 2221 1 1111 13455554443 345679999886544
Q ss_pred cCC---Chh----HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 187 HGL---GDE----DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 187 h~~---~d~----~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
-.- +.. ....+++++...++..++.++++++.
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 221 221 35677777766665322257777765
No 343
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=62.17 E-value=42 Score=29.19 Aligned_cols=122 Identities=13% Similarity=0.102 Sum_probs=62.3
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHH-hcCCCCCCeEEEEc-CCCCCCCCceEEEecccccCCChhH
Q 023384 118 GLGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVV-ANLPEADNLKYIAG-DMFQFIPPADAFLFKLVFHGLGDED 193 (283)
Q Consensus 118 ~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~rv~~~~~-d~~~~~p~~D~v~~~~vlh~~~d~~ 193 (283)
...+|+-||+|. |......+......+++++|. ++.. +.+++... ..... |..+....+|+|+..-.--+.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVi~at~~~~~---- 251 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG-NAVPLDELLELLNEADVVISATGAPHY---- 251 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC-eEEeHHHHHHHHhcCCEEEECCCCCch----
Confidence 468899998753 333333333323356888888 4433 33333111 22222 222224468999887643211
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHH
Q 023384 194 GLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFD 261 (283)
Q Consensus 194 ~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 261 (283)
..+++.+.+.. + ++..+++|...|.+-... . .+ ..+-..++.++|+++.++
T Consensus 252 -~~~~~~~~~~~-~---~~~~~viDlavPrdi~~~-v------~~-----l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 252 -AKIVERAMKKR-S---GKPRLIVDLAVPRDIEPE-V------GE-----LEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred -HHHHHHHHhhC-C---CCCeEEEEeCCCCCCchh-h------cc-----CCCcEEEEHHHhHHHHHH
Confidence 23334333332 2 356788898887654321 0 00 113345677888777664
No 344
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=62.09 E-value=47 Score=32.71 Aligned_cols=148 Identities=10% Similarity=0.041 Sum_probs=81.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEEcCCCCCC
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------------------ADNLKYIAGDMFQFI 174 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~rv~~~~~d~~~~~ 174 (283)
..+|.=||+|+=...++..-+..+.++++.|. ++.++.+.+ ..|+++. .|+ +..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~~ 390 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY-AGF 390 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HHh
Confidence 36799999998666665555556899999998 666543321 2455443 233 334
Q ss_pred CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE-eeecCCCccchhhhhhhhhcccccc--------cc-
Q 023384 175 PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII-DIVINAEEEEHELTETKFLFDIVMS--------VN- 244 (283)
Q Consensus 175 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~-d~~~~~~~~~~~~~~~~~~~~~~~~--------~~- 244 (283)
.+.|+|+=. +.-++.- ..++++++-+.++| ..++.. ...++-..-.........+..+..+ +-
T Consensus 391 ~~aDlViEa-v~E~l~~--K~~vf~~l~~~~~~----~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEv 463 (715)
T PRK11730 391 ERVDVVVEA-VVENPKV--KAAVLAEVEQKVRE----DTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEV 463 (715)
T ss_pred cCCCEEEec-ccCcHHH--HHHHHHHHHhhCCC----CcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEe
Confidence 468887754 4443333 45889999999998 344433 2222211000000000011111110 00
Q ss_pred cCC---ccCCHHHHHHHHHHCCCCeeeEEEcCCc
Q 023384 245 ATG---KERTESEWAKLFFDACFSHYKITPIFGM 275 (283)
Q Consensus 245 ~~~---~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 275 (283)
..| ...+.+...++++..|...+.+...+|+
T Consensus 464 v~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (715)
T PRK11730 464 IRGEKTSDETIATVVAYASKMGKTPIVVNDCPGF 497 (715)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCceEEecCcCch
Confidence 111 2235567788899999998888777775
No 345
>PHA01634 hypothetical protein
Probab=61.54 E-value=12 Score=27.94 Aligned_cols=36 Identities=11% Similarity=-0.051 Sum_probs=26.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHh
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVA 155 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 155 (283)
.++|+|||++.|..++.++.+.. -+++.++. +...+
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k 65 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRK 65 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHH
Confidence 48999999999999999887732 24667766 44333
No 346
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=61.39 E-value=37 Score=29.73 Aligned_cols=91 Identities=12% Similarity=0.067 Sum_probs=52.2
Q ss_pred CCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEE---cCCCC---CCCCceEEEecccccCC
Q 023384 118 GLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIA---GDMFQ---FIPPADAFLFKLVFHGL 189 (283)
Q Consensus 118 ~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~---~d~~~---~~p~~D~v~~~~vlh~~ 189 (283)
...+||=+|+| .|..+..+++..-..++++.|. ++..+.+++..--.++. .|+.+ ..+.+|+++-..-
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G---- 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG---- 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence 45678877754 5666677777753336788887 66666665411111111 11111 1113787765432
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
.+ ..++...++|++ ||+++++..
T Consensus 245 -~~---~~~~~~~~~l~~---~G~iv~~G~ 267 (343)
T PRK09880 245 -HP---SSINTCLEVTRA---KGVMVQVGM 267 (343)
T ss_pred -CH---HHHHHHHHHhhc---CCEEEEEcc
Confidence 11 346677888999 799988864
No 347
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=60.80 E-value=48 Score=28.83 Aligned_cols=96 Identities=23% Similarity=0.218 Sum_probs=54.2
Q ss_pred EEEEcCCc-cHHHHHHHHHCCCC-eEEEeec-hHH-----HhcCC--C--C-CCeEEEEcCCCCCCCCceEEEecccccC
Q 023384 122 LVDVGGGN-GSLSRIISEAFPGI-KCTVLDL-PHV-----VANLP--E--A-DNLKYIAGDMFQFIPPADAFLFKLVFHG 188 (283)
Q Consensus 122 vlDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~-----~~~a~--~--~-~rv~~~~~d~~~~~p~~D~v~~~~vlh~ 188 (283)
|.=||+|. |......+...+-. +.+++|+ .+. ++... . . .++++..+|+ ++..++|+|++..-.-.
T Consensus 2 i~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y-~~~~~aDivvitaG~~~ 80 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDY-DDCADADIIVITAGPSI 80 (307)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCH-HHhCCCCEEEECCCCCC
Confidence 45577765 44443333333333 5889997 321 11111 1 1 2466666663 35557899888654422
Q ss_pred ---CCh------hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 189 ---LGD------EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 189 ---~~d------~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.++ ....+|++.+.+.++..+|.|.++++.
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 221 356788888888886533457776665
No 348
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=60.54 E-value=30 Score=29.44 Aligned_cols=82 Identities=11% Similarity=0.093 Sum_probs=46.4
Q ss_pred CeEEEEcCCc--cHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHH
Q 023384 120 GSLVDVGGGN--GSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDG 194 (283)
Q Consensus 120 ~~vlDvGgG~--G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~ 194 (283)
.+|.=||||. +.++..++++. +..++++.|. ++.++.+.+...++. ..|..+-....|+|+++- ++...
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~-~~~~~e~~~~aDiIiLav-----kP~~~ 76 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITI-TTNNNEVANSADILILSI-----KPDLY 76 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEE-eCCcHHHHhhCCEEEEEe-----ChHHH
Confidence 3577788763 22333344332 2346888897 555554432112322 222222223589988844 56778
Q ss_pred HHHHHHHHHhhcc
Q 023384 195 LKILKKRRAAIAS 207 (283)
Q Consensus 195 ~~iL~~~~~~L~p 207 (283)
..+++.+...+++
T Consensus 77 ~~vl~~l~~~~~~ 89 (272)
T PRK12491 77 SSVINQIKDQIKN 89 (272)
T ss_pred HHHHHHHHHhhcC
Confidence 8889998888886
No 349
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=60.11 E-value=14 Score=28.90 Aligned_cols=89 Identities=12% Similarity=0.124 Sum_probs=49.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeech-H-HHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHH
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLP-H-VVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~-~-~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~ 196 (283)
.++|.=||.|+=..+.++--+-..+++++-..+ + ..+.|++ +.. ...++.+....+|+|++ -.||+...+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~-~Gf--~v~~~~eAv~~aDvV~~-----L~PD~~q~~ 75 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKA-DGF--EVMSVAEAVKKADVVML-----LLPDEVQPE 75 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHH-TT---ECCEHHHHHHC-SEEEE------S-HHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHH-CCC--eeccHHHHHhhCCEEEE-----eCChHHHHH
Confidence 478899998866666665555567787766663 2 4555543 222 12222222235899887 348887788
Q ss_pred HH-HHHHHhhccCCCCcEEEEEee
Q 023384 197 IL-KKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 197 iL-~~~~~~L~p~~~gg~lli~d~ 219 (283)
+. +.+...|+| |..+++-.
T Consensus 76 vy~~~I~p~l~~----G~~L~fah 95 (165)
T PF07991_consen 76 VYEEEIAPNLKP----GATLVFAH 95 (165)
T ss_dssp HHHHHHHHHS-T----T-EEEESS
T ss_pred HHHHHHHhhCCC----CCEEEeCC
Confidence 87 888999999 55555543
No 350
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=59.45 E-value=19 Score=34.26 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=30.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCe-EEEeechH
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIK-CTVLDLPH 152 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~~~ 152 (283)
+.....|||++|..|.++...++..|-.. ++++|+-+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 45667899999999999999999988544 78999843
No 351
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=59.31 E-value=76 Score=27.47 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=50.2
Q ss_pred eEEEEcCCc-cHHHHHHHHHCCC-CeEEEeec-hHHHhcCC-C--------CCCeEEEEcCCCCCCCCceEEEecccccC
Q 023384 121 SLVDVGGGN-GSLSRIISEAFPG-IKCTVLDL-PHVVANLP-E--------ADNLKYIAGDMFQFIPPADAFLFKLVFHG 188 (283)
Q Consensus 121 ~vlDvGgG~-G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~-~--------~~rv~~~~~d~~~~~p~~D~v~~~~vlh~ 188 (283)
+|.=||+|. |......+....- -+++++|. ++..+... . ...+.+..++. +...++|+|++..-.-.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~~ 80 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAPQ 80 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCCC
Confidence 577788764 3333222222232 37899998 44332211 1 12334444333 23457999988654321
Q ss_pred C---Chh----HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 189 L---GDE----DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 189 ~---~d~----~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
- +.. ...++++++.+.++...|.+.++++.
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 1 111 24667777777776533357777665
No 352
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=59.12 E-value=97 Score=28.27 Aligned_cols=80 Identities=14% Similarity=0.208 Sum_probs=49.4
Q ss_pred eEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC-------CCCceEEEecccccCCC
Q 023384 121 SLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF-------IPPADAFLFKLVFHGLG 190 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~v~~~~vlh~~~ 190 (283)
+|+=+|+ |..+..+++.. .+.+++++|. ++.++.+++...+.++.||..++ +..+|.+++.. +
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~-----~ 74 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT-----D 74 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec-----C
Confidence 4566665 77777777654 3568899998 77776665434688888998762 23488777643 2
Q ss_pred hhHHHHHHHHHHHhhcc
Q 023384 191 DEDGLKILKKRRAAIAS 207 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p 207 (283)
+++.-.++....+.+.|
T Consensus 75 ~~~~n~~~~~~~r~~~~ 91 (453)
T PRK09496 75 SDETNMVACQIAKSLFG 91 (453)
T ss_pred ChHHHHHHHHHHHHhcC
Confidence 22323334444555544
No 353
>PRK06545 prephenate dehydrogenase; Validated
Probab=58.96 E-value=39 Score=30.07 Aligned_cols=82 Identities=20% Similarity=0.186 Sum_probs=41.1
Q ss_pred eEEEEcCCc--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHH
Q 023384 121 SLVDVGGGN--GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKI 197 (283)
Q Consensus 121 ~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~i 197 (283)
+|.=||.|. |.++..+.++.+...++..|. ......+....-+.-...|..+...++|+|+++- +.+....+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilav-----P~~~~~~v 76 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAV-----PVDATAAL 76 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeC-----CHHHHHHH
Confidence 455666652 444445555545555555554 2222222111111101111111234589998865 55567788
Q ss_pred HHHHHH-hhcc
Q 023384 198 LKKRRA-AIAS 207 (283)
Q Consensus 198 L~~~~~-~L~p 207 (283)
++++.+ .++|
T Consensus 77 l~~l~~~~l~~ 87 (359)
T PRK06545 77 LAELADLELKP 87 (359)
T ss_pred HHHHhhcCCCC
Confidence 888887 4787
No 354
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=58.78 E-value=76 Score=27.63 Aligned_cols=89 Identities=17% Similarity=0.089 Sum_probs=54.1
Q ss_pred cCCCCeEEEEcC-CccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC-CCCCceEEEecccccCCC
Q 023384 116 FEGLGSLVDVGG-GNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ-FIPPADAFLFKLVFHGLG 190 (283)
Q Consensus 116 ~~~~~~vlDvGg-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~ 190 (283)
.....+||=.|+ +.|..+..+++.. +.++++.+. ++-.+.+++ .+.+ + |..+ ....+|+++.....
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~~v--i--~~~~~~~~~~d~~i~~~~~---- 233 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAASA--G--GAYDTPPEPLDAAILFAPA---- 233 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCcee--c--cccccCcccceEEEECCCc----
Confidence 455678888884 4666677777775 567777776 555665554 1211 1 1111 11237776543321
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
...+....++|++ ||+++++-..
T Consensus 234 ----~~~~~~~~~~l~~---~G~~v~~G~~ 256 (329)
T TIGR02822 234 ----GGLVPPALEALDR---GGVLAVAGIH 256 (329)
T ss_pred ----HHHHHHHHHhhCC---CcEEEEEecc
Confidence 1357788889999 7999887653
No 355
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=58.28 E-value=20 Score=26.69 Aligned_cols=28 Identities=14% Similarity=-0.104 Sum_probs=24.5
Q ss_pred CccCCHHHHHHHHHHCCCCeeeEEEcCC
Q 023384 247 GKERTESEWAKLFFDACFSHYKITPIFG 274 (283)
Q Consensus 247 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 274 (283)
+.-++.+++.+++++|||++.+.+..+.
T Consensus 93 S~Ky~~~~~~~l~~~aGl~~~~~w~d~~ 120 (127)
T PF10017_consen 93 SYKYSPEEFEALAEQAGLEVEKRWTDPK 120 (127)
T ss_pred eeCcCHHHHHHHHHHCCCeeEEEEECCC
Confidence 4567999999999999999999887754
No 356
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=58.21 E-value=45 Score=30.49 Aligned_cols=62 Identities=24% Similarity=0.422 Sum_probs=42.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCCC--C-----CCceEEEe
Q 023384 119 LGSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQF--I-----PPADAFLF 182 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~--~-----p~~D~v~~ 182 (283)
..+|+=+|+ |.++..+++.+ -+..++++|. ++.++..++ ...+.++.||..++ + ..+|.+++
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 467888877 66666666654 3467899998 776666543 35678899998763 1 24787765
No 357
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=57.86 E-value=6.8 Score=27.12 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=43.3
Q ss_pred CccHHHHHHHHHC-----CCCeEE-Eeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHHHHH
Q 023384 128 GNGSLSRIISEAF-----PGIKCT-VLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKK 200 (283)
Q Consensus 128 G~G~~~~~l~~~~-----p~~~~~-~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~ 200 (283)
|.|..+.++++.+ +..+++ +.+. ++..+...+.-.+.+...+..+-....|+|+++ .++.....+++.
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvila-----v~p~~~~~v~~~ 80 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILA-----VKPQQLPEVLSE 80 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE------S-GGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEE-----ECHHHHHHHHHH
Confidence 4455555554432 224666 4377 666655443223444333332223358999884 467778888998
Q ss_pred HHHhhccCCCCcEEEE
Q 023384 201 RRAAIASNGERGKVII 216 (283)
Q Consensus 201 ~~~~L~p~~~gg~lli 216 (283)
+ ..+.+ ++++|
T Consensus 81 i-~~~~~----~~~vi 91 (96)
T PF03807_consen 81 I-PHLLK----GKLVI 91 (96)
T ss_dssp H-HHHHT----TSEEE
T ss_pred H-hhccC----CCEEE
Confidence 8 66666 55554
No 358
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=57.58 E-value=48 Score=31.46 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=50.3
Q ss_pred CCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC-------CCCceEEEecccccCCChhHHHH
Q 023384 127 GGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF-------IPPADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 127 gG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~v~~~~vlh~~~d~~~~~ 196 (283)
||.|..+..+++.. .+.+++++|. ++.++.+++ .....+.||..++ ..++|.++..- + +|+++..
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~--~--~~~~~~~ 497 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-RGIRAVLGNAANEEIMQLAHLDCARWLLLTI--P--NGYEAGE 497 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-CCCeEEEcCCCCHHHHHhcCccccCEEEEEc--C--ChHHHHH
Confidence 45566777776654 3568999998 777777764 5688999999884 12477655422 1 3344444
Q ss_pred HHHHHHHhhccCCCCcEEEE
Q 023384 197 ILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 197 iL~~~~~~L~p~~~gg~lli 216 (283)
+...+ +.+.| ..+++.
T Consensus 498 iv~~~-~~~~~---~~~iia 513 (558)
T PRK10669 498 IVASA-REKRP---DIEIIA 513 (558)
T ss_pred HHHHH-HHHCC---CCeEEE
Confidence 55544 44566 355554
No 359
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=57.09 E-value=71 Score=23.12 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHCCCCeEEEe-echHHHh-cCCC-CCCeE-EEEcCCCC-CC--CCceEEEecccccCCChhHHHHHHHHH
Q 023384 129 NGSLSRIISEAFPGIKCTVL-DLPHVVA-NLPE-ADNLK-YIAGDMFQ-FI--PPADAFLFKLVFHGLGDEDGLKILKKR 201 (283)
Q Consensus 129 ~G~~~~~l~~~~p~~~~~~~-D~~~~~~-~a~~-~~rv~-~~~~d~~~-~~--p~~D~v~~~~vlh~~~d~~~~~iL~~~ 201 (283)
.|......+...|+.+++.+ +.+.... .++. ...+. ....++.. .+ .+.|+++++- +++...+++..+
T Consensus 11 ~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~-----~~~~~~~~~~~~ 85 (122)
T smart00859 11 VGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLAL-----PHGVSKEIAPLL 85 (122)
T ss_pred HHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcC-----CcHHHHHHHHHH
Confidence 55555566667788887666 5432111 1111 11221 11112221 22 3589887744 555666666656
Q ss_pred HHhhcc
Q 023384 202 RAAIAS 207 (283)
Q Consensus 202 ~~~L~p 207 (283)
.+.+++
T Consensus 86 ~~~~~~ 91 (122)
T smart00859 86 PKAAEA 91 (122)
T ss_pred HhhhcC
Confidence 666777
No 360
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=57.04 E-value=1e+02 Score=28.00 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=50.9
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCC-------------------CCeEEEEcCCCCCCCCceEE
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEA-------------------DNLKYIAGDMFQFIPPADAF 180 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------------~rv~~~~~d~~~~~p~~D~v 180 (283)
+|-=||+|.=....+..-+..+.+++++|. ++.++..++. .++++. .|..+.....|+|
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~~~~~advv 80 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYEDAIRDADVI 80 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHHHHHhhCCEE
Confidence 455677775444443333334568999998 6666544421 223221 1221113357888
Q ss_pred Eeccccc-----CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 181 LFKLVFH-----GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 181 ~~~~vlh-----~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
+++-.-. ..+-......++.+.+.+++ |.++|.....
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~----g~lvi~~STv 122 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRK----GATVVLESTV 122 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCC----CCEEEEeCcC
Confidence 7754321 11112456667788888887 5666655433
No 361
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=56.02 E-value=57 Score=27.85 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=49.3
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------------CCCeEEEEcCCCCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------------------------ADNLKYIAGDMFQFI 174 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------------~~rv~~~~~d~~~~~ 174 (283)
.+|.=||+|.=..+++.+-+..+.+++++|. ++.++.+.+ ..++++ ..|+.+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh
Confidence 5688888886555554444444678999998 655544321 123332 22332234
Q ss_pred CCceEEEecccccCCChhHHHHHHHHHHHhhcc
Q 023384 175 PPADAFLFKLVFHGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 175 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p 207 (283)
.+.|+|+.+-. . .-+....+++++.+.+++
T Consensus 83 ~~aDlVieavp-e--~~~~k~~~~~~l~~~~~~ 112 (287)
T PRK08293 83 KDADLVIEAVP-E--DPEIKGDFYEELAKVAPE 112 (287)
T ss_pred cCCCEEEEecc-C--CHHHHHHHHHHHHhhCCC
Confidence 46898888542 0 122356778899888887
No 362
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=55.70 E-value=56 Score=32.18 Aligned_cols=150 Identities=10% Similarity=0.015 Sum_probs=82.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEEcCCCCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------------------ADNLKYIAGDMFQF 173 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~rv~~~~~d~~~~ 173 (283)
...+|.=||+|+=...++.+-+.-+.++++.|. ++.++.+.+ ..|+++.. |+ +.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~-~~ 389 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SY-AG 389 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CH-HH
Confidence 345799999997666666665566899999998 666544321 23454432 22 23
Q ss_pred CCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccc--------cc-
Q 023384 174 IPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMS--------VN- 244 (283)
Q Consensus 174 ~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~- 244 (283)
+.++|+|+=. +.-++.- ..++++++-+.++| +..+.-....++-..-............+..+ +-
T Consensus 390 ~~~aDlViEa-v~E~l~~--K~~vf~~l~~~~~~---~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEv 463 (714)
T TIGR02437 390 FDNVDIVVEA-VVENPKV--KAAVLAEVEQHVRE---DAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEV 463 (714)
T ss_pred hcCCCEEEEc-CcccHHH--HHHHHHHHHhhCCC---CcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEee
Confidence 4468887764 4544443 35889999999998 33333222222211000000000011111111 00
Q ss_pred cCCc---cCCHHHHHHHHHHCCCCeeeEEEcCCc
Q 023384 245 ATGK---ERTESEWAKLFFDACFSHYKITPIFGM 275 (283)
Q Consensus 245 ~~~~---~~t~~e~~~ll~~aGf~~~~~~~~~~~ 275 (283)
..|. ..+.+...+++++.|-..+.+...+|+
T Consensus 464 v~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (714)
T TIGR02437 464 IRGEKSSDETIATVVAYASKMGKTPIVVNDCPGF 497 (714)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcccc
Confidence 1121 234566788889999888887766664
No 363
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=55.58 E-value=1.1e+02 Score=24.73 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=37.7
Q ss_pred CCCeEEEEcCCccHHHH--HHHHHCCCCeEEEeec--hHHHhcCCCCCCeEEEEcCCCC-CCCCceEEEecc
Q 023384 118 GLGSLVDVGGGNGSLSR--IISEAFPGIKCTVLDL--PHVVANLPEADNLKYIAGDMFQ-FIPPADAFLFKL 184 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~--~l~~~~p~~~~~~~D~--~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~v~~~~ 184 (283)
..++||=||||.=.... .|++. +.++++++. .+.+....+..++.+....+.. .+..+|+++...
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT 78 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY--GAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAAT 78 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcC
Confidence 34789999987544332 34443 356666653 2222222223567777766665 566799888853
No 364
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.48 E-value=55 Score=28.09 Aligned_cols=90 Identities=11% Similarity=0.133 Sum_probs=52.7
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEEcCCCCCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------------------ADNLKYIAGDMFQFIP 175 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~rv~~~~~d~~~~~p 175 (283)
.+|-=||+|+=...++..-...+.+++++|. ++.++.+.+ ..|+++ ..|. +...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~~~ 83 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GDFA 83 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HHhC
Confidence 5788899885444444444445889999999 776654221 133432 2343 3344
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhh-ccCCCCcEEEEEe
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAI-ASNGERGKVIIID 218 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L-~p~~~gg~lli~d 218 (283)
+.|+|+-+- .-+ .+....+++.+.+.+ +| +.++...
T Consensus 84 ~~d~ViEav-~E~--~~~K~~l~~~l~~~~~~~----~~il~sn 120 (286)
T PRK07819 84 DRQLVIEAV-VED--EAVKTEIFAELDKVVTDP----DAVLASN 120 (286)
T ss_pred CCCEEEEec-ccC--HHHHHHHHHHHHHhhCCC----CcEEEEC
Confidence 688887752 221 122456788888887 77 4555443
No 365
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=55.35 E-value=40 Score=31.60 Aligned_cols=95 Identities=14% Similarity=0.211 Sum_probs=56.4
Q ss_pred CCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC------------------------
Q 023384 119 LGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ------------------------ 172 (283)
Q Consensus 119 ~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~------------------------ 172 (283)
..+++=+|+|. |..+..+++.. +.+++++|. ++..+.++. -..+++..|..+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 47999999885 45666666664 467899998 777766654 122333333211
Q ss_pred --CCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 173 --FIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 173 --~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
...++|+++..-.+..-+.+ .-+.++..+.||| |+. |+|...+
T Consensus 242 ~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKp---Gsv--IVDlA~d 286 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKA---GSV--IVDLAAE 286 (511)
T ss_pred HHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCC---CCE--EEEeeeC
Confidence 12348999766544322122 2357788899999 564 5554443
No 366
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=55.22 E-value=73 Score=31.32 Aligned_cols=148 Identities=12% Similarity=0.083 Sum_probs=79.5
Q ss_pred CCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEEcCCCCC
Q 023384 119 LGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVVANLPE-----------------------ADNLKYIAGDMFQF 173 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------------~~rv~~~~~d~~~~ 173 (283)
..+|.=||+|+=...++..-+ ..+..+++.|. ++.++.+.+ ..|+++.. |+ +.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~-~~ 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT-DY-RG 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC-Ch-HH
Confidence 467999999875555544443 56899999998 665544321 24555442 32 33
Q ss_pred CCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe-eecCCCccchhhhhhhhhcccccc--------cc
Q 023384 174 IPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID-IVINAEEEEHELTETKFLFDIVMS--------VN 244 (283)
Q Consensus 174 ~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d-~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 244 (283)
..+.|+|+=. +.-+..- ..++++++-+.++| +.++... ..++-..-.........+..+..+ +-
T Consensus 387 ~~~aDlViEa-v~E~~~~--K~~v~~~le~~~~~----~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVE 459 (708)
T PRK11154 387 FKHADVVIEA-VFEDLAL--KQQMVAEVEQNCAP----HTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVE 459 (708)
T ss_pred hccCCEEeec-ccccHHH--HHHHHHHHHhhCCC----CcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEE
Confidence 4468887654 4443333 45889999999999 4444333 222211100000000011111110 00
Q ss_pred -cCC---ccCCHHHHHHHHHHCCCCeeeEEEcCCc
Q 023384 245 -ATG---KERTESEWAKLFFDACFSHYKITPIFGM 275 (283)
Q Consensus 245 -~~~---~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 275 (283)
..| ..-+.+...+++++.|...+.+...+|+
T Consensus 460 vv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pGf 494 (708)
T PRK11154 460 VIPHAKTSAETIATTVALAKKQGKTPIVVRDGAGF 494 (708)
T ss_pred EECCCCCCHHHHHHHHHHHHHcCCceEEEeccCcH
Confidence 011 1224556678889999988877776664
No 367
>PRK10637 cysG siroheme synthase; Provisional
Probab=55.05 E-value=48 Score=30.64 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=41.5
Q ss_pred CCCeEEEEcCCccHHHHH--HHHHCCCCeEEEe--echHHHhcCCCCCCeEEEEcCCCC-CCCCceEEEec
Q 023384 118 GLGSLVDVGGGNGSLSRI--ISEAFPGIKCTVL--DLPHVVANLPEADNLKYIAGDMFQ-FIPPADAFLFK 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~--l~~~~p~~~~~~~--D~~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~v~~~ 183 (283)
..++||=||||.=..-+. |++. +.+++++ ++.+-+....+..+++++..++.. ++.++++|+..
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~--ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~a 79 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDA--GARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAA 79 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEEC
Confidence 458999999998765543 4444 4455444 552223323336789999988877 67778887774
No 368
>PRK08818 prephenate dehydrogenase; Provisional
Probab=54.65 E-value=47 Score=29.80 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=42.9
Q ss_pred CeEEEEcC-C--ccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHH
Q 023384 120 GSLVDVGG-G--NGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 120 ~~vlDvGg-G--~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~ 196 (283)
.+|.=||+ | -|.++..+.+. ...+++++|... .. ..+..+...++|+|+++- |-....+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~d---------~~---~~~~~~~v~~aDlVilav-----Pv~~~~~ 66 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPAD---------PG---SLDPATLLQRADVLIFSA-----PIRHTAA 66 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCCc---------cc---cCCHHHHhcCCCEEEEeC-----CHHHHHH
Confidence 57888886 5 34444555544 367888888520 00 001111234689999965 5567788
Q ss_pred HHHHHHHh---hcc
Q 023384 197 ILKKRRAA---IAS 207 (283)
Q Consensus 197 iL~~~~~~---L~p 207 (283)
+++++.+. |+|
T Consensus 67 ~l~~l~~~~~~l~~ 80 (370)
T PRK08818 67 LIEEYVALAGGRAA 80 (370)
T ss_pred HHHHHhhhhcCCCC
Confidence 89988875 687
No 369
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.47 E-value=88 Score=26.71 Aligned_cols=145 Identities=13% Similarity=0.149 Sum_probs=72.2
Q ss_pred CeEEEEcCCccH--HHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEEcCCCCC
Q 023384 120 GSLVDVGGGNGS--LSRIISEAFPGIKCTVLDL-PHVVANLPE-----------------------ADNLKYIAGDMFQF 173 (283)
Q Consensus 120 ~~vlDvGgG~G~--~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~rv~~~~~d~~~~ 173 (283)
++|.=||+|.=. .+..++++ +.+++++|. ++.++.+.+ ..++++ ..|..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence 467778876322 22233333 567899998 666655321 012332 2233223
Q ss_pred CCCceEEEecccccCCChhH-HHHHHHHHHHhhccCCCCcEEEEEee-ecCCCccchhhhhhhhhcccc---------cc
Q 023384 174 IPPADAFLFKLVFHGLGDED-GLKILKKRRAAIASNGERGKVIIIDI-VINAEEEEHELTETKFLFDIV---------MS 242 (283)
Q Consensus 174 ~p~~D~v~~~~vlh~~~d~~-~~~iL~~~~~~L~p~~~gg~lli~d~-~~~~~~~~~~~~~~~~~~~~~---------~~ 242 (283)
..+.|+|+.+-. .+.+ ...+++++.+.++| +.++..+. .++.................. +.
T Consensus 79 ~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~----~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lv 150 (288)
T PRK09260 79 VADADLVIEAVP----EKLELKKAVFETADAHAPA----ECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLV 150 (288)
T ss_pred hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCC----CcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceE
Confidence 446899887543 2222 34678888888888 55554432 222110000000000000111 11
Q ss_pred cccCC---ccCCHHHHHHHHHHCCCCeeeEEEcCCc
Q 023384 243 VNATG---KERTESEWAKLFFDACFSHYKITPIFGM 275 (283)
Q Consensus 243 ~~~~~---~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 275 (283)
-..+| ..-+.+....+++..|-+.+.+...+++
T Consensus 151 e~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~Gf 186 (288)
T PRK09260 151 ELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPGF 186 (288)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcccH
Confidence 11223 3445677788899999887777655654
No 370
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=54.31 E-value=12 Score=29.05 Aligned_cols=84 Identities=23% Similarity=0.298 Sum_probs=45.0
Q ss_pred eEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHH
Q 023384 121 SLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKI 197 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~i 197 (283)
+|-=||. |.....+++++ .+.++++.|+ ++..+...+. .+... .+..+-....|+|+++-. ++++...+
T Consensus 3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-g~~~~-~s~~e~~~~~dvvi~~v~----~~~~v~~v 74 (163)
T PF03446_consen 3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA-GAEVA-DSPAEAAEQADVVILCVP----DDDAVEAV 74 (163)
T ss_dssp EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT-TEEEE-SSHHHHHHHBSEEEE-SS----SHHHHHHH
T ss_pred EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh-hhhhh-hhhhhHhhcccceEeecc----cchhhhhh
Confidence 3444554 55555555543 3678999998 6666554422 22211 111111123688877432 34666788
Q ss_pred HHH--HHHhhccCCCCcEEEE
Q 023384 198 LKK--RRAAIASNGERGKVII 216 (283)
Q Consensus 198 L~~--~~~~L~p~~~gg~lli 216 (283)
+.. +...|++ |.++|
T Consensus 75 ~~~~~i~~~l~~----g~iii 91 (163)
T PF03446_consen 75 LFGENILAGLRP----GKIII 91 (163)
T ss_dssp HHCTTHGGGS-T----TEEEE
T ss_pred hhhhHHhhcccc----ceEEE
Confidence 888 8888887 55554
No 371
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=54.08 E-value=1e+02 Score=24.02 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=59.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCCC--CC-----CceEEEecccccCC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQF--IP-----PADAFLFKLVFHGL 189 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~--~p-----~~D~v~~~~vlh~~ 189 (283)
.+..+|+=|||=+-.....- ...++.++.++|...--+.- .+. .|+--|+.+| +| .+|+|++-=-+ +
T Consensus 24 ~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~--~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF--l 97 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQF--GGD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF--L 97 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhc--CCc-ceEECCCCChhhhhhhcCCCceEEEECCCC--C
Confidence 45588999987655544322 25678889999985444442 223 5677777774 44 48999986655 5
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+++-..+..+-++..+++ ++++++..
T Consensus 98 ~~ec~~k~a~ti~~L~k~---~~kii~~T 123 (162)
T PF10237_consen 98 SEECLTKTAETIRLLLKP---GGKIILCT 123 (162)
T ss_pred CHHHHHHHHHHHHHHhCc---cceEEEec
Confidence 565555666666666676 67877654
No 372
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=54.01 E-value=28 Score=30.63 Aligned_cols=81 Identities=12% Similarity=0.072 Sum_probs=44.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeech-H-HHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHH
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLP-H-VVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~-~-~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~ 196 (283)
.++|-=||+|.=..+.+..-+-.+.++++.+.+ . ..+.+.+ ..+. ..|..+-...+|+|++. .++.....
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~-~G~~--~~s~~eaa~~ADVVvLa-----VPd~~~~~ 88 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEA-DGFE--VLTVAEAAKWADVIMIL-----LPDEVQAE 88 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHH-CCCe--eCCHHHHHhcCCEEEEc-----CCHHHHHH
Confidence 467888888763333332222235577766652 2 2222222 2222 12322223458998884 36666677
Q ss_pred HH-HHHHHhhcc
Q 023384 197 IL-KKRRAAIAS 207 (283)
Q Consensus 197 iL-~~~~~~L~p 207 (283)
++ +.+...|+|
T Consensus 89 V~~~~I~~~Lk~ 100 (330)
T PRK05479 89 VYEEEIEPNLKE 100 (330)
T ss_pred HHHHHHHhcCCC
Confidence 77 778889998
No 373
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=53.67 E-value=1.2e+02 Score=24.73 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=52.7
Q ss_pred CCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEc---CCCC-----CCCCceEEEecccc
Q 023384 117 EGLGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAG---DMFQ-----FIPPADAFLFKLVF 186 (283)
Q Consensus 117 ~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~---d~~~-----~~p~~D~v~~~~vl 186 (283)
....+||..|+|+ |..+..+++... .++++.+. ++..+.+++.....++.. +..+ ....+|+++-..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~-- 209 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAV-- 209 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECC--
Confidence 5568999999885 777777777654 77888877 444443322110111111 1100 112488887532
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
... ..+..+.+.|++ +|+++.+...
T Consensus 210 ---~~~---~~~~~~~~~l~~---~G~~v~~~~~ 234 (271)
T cd05188 210 ---GGP---ETLAQALRLLRP---GGRIVVVGGT 234 (271)
T ss_pred ---CCH---HHHHHHHHhccc---CCEEEEEccC
Confidence 221 346677788888 6888876643
No 374
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=53.44 E-value=5.2 Score=27.87 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=23.2
Q ss_pred ccccccCeeEeeccCCCCceEecchhcchhhcCC
Q 023384 2 RLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDK 35 (283)
Q Consensus 2 r~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~ 35 (283)
.+|...|+++... .|.|++|+.++.+...+
T Consensus 62 ~~L~~aGli~~~~----rG~~~iT~~G~~~l~~~ 91 (92)
T PF14338_consen 62 SYLKKAGLIERPK----RGIWRITEKGRKALAEH 91 (92)
T ss_pred HHHHHCCCccCCC----CCceEECHhHHHHHhhC
Confidence 3578899998876 79999999998544433
No 375
>PRK09273 hypothetical protein; Provisional
Probab=53.40 E-value=13 Score=30.19 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLP 158 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 158 (283)
+.....=++||||.=....+.++|++++-.+--+.....++
T Consensus 62 g~~d~GIliCGTGiG~siAANK~pGIraalc~d~~sA~lar 102 (211)
T PRK09273 62 KAVDFVVTGCGTGQGAMLALNSFPGVVCGYCIDPTDAYLFA 102 (211)
T ss_pred CCCCEEEEEcCcHHHHHHHHhcCCCeEEEEeCCHHHHHHHH
Confidence 33556778999999999999999999975554344444433
No 376
>PRK08267 short chain dehydrogenase; Provisional
Probab=52.89 E-value=1.3e+02 Score=24.79 Aligned_cols=52 Identities=23% Similarity=0.218 Sum_probs=31.8
Q ss_pred CeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQ 172 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~ 172 (283)
+++|-.|| +|..+..+++.+ .+.++++++. ++.++...+ ..++.++.+|+.+
T Consensus 2 k~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~ 59 (260)
T PRK08267 2 KSIFITGA-ASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTD 59 (260)
T ss_pred cEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC
Confidence 35666664 455555555543 3567888887 444433221 4578899999987
No 377
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=52.58 E-value=61 Score=31.33 Aligned_cols=87 Identities=20% Similarity=0.315 Sum_probs=53.2
Q ss_pred CeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC-------CCCceEEEecccccCCC
Q 023384 120 GSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF-------IPPADAFLFKLVFHGLG 190 (283)
Q Consensus 120 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~v~~~~vlh~~~ 190 (283)
.+|+=+|||. |......+++ .+.+++++|. ++.++.+++ .....+.||..++ ...+|++++.. . +
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv~~--~--d 474 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLS-SGVKMTVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAI--D--D 474 (621)
T ss_pred CcEEEEecChHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe--C--C
Confidence 5677777653 3333333333 3578999999 777777764 4577899998883 12478777643 1 3
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
|+.+..+...+++ +.| .-+++.
T Consensus 475 ~~~n~~i~~~ar~-~~p---~~~iia 496 (621)
T PRK03562 475 PQTSLQLVELVKE-HFP---HLQIIA 496 (621)
T ss_pred HHHHHHHHHHHHH-hCC---CCeEEE
Confidence 4555666665555 455 355554
No 378
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=51.82 E-value=84 Score=27.00 Aligned_cols=91 Identities=12% Similarity=0.147 Sum_probs=53.0
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcC---CC----C--CCCCceEEEecc
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGD---MF----Q--FIPPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d---~~----~--~~p~~D~v~~~~ 184 (283)
+....+||..|+| .|..+..++++. +.++++.+. ++..+.+++. .+..+..+ .. . .-..+|+++-+.
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL-GADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh-CCCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 4556788888865 578888888876 467777776 5554444321 11111111 10 0 112378876532
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
-. ...++.+.+.|++ +|+++.+..
T Consensus 241 g~--------~~~~~~~~~~l~~---~G~~v~~g~ 264 (338)
T cd08254 241 GT--------QPTFEDAQKAVKP---GGRIVVVGL 264 (338)
T ss_pred CC--------HHHHHHHHHHhhc---CCEEEEECC
Confidence 11 1457788899999 788887643
No 379
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=51.03 E-value=5.6 Score=34.23 Aligned_cols=99 Identities=17% Similarity=0.133 Sum_probs=62.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC--CceEEEecccccC
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP--PADAFLFKLVFHG 188 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p--~~D~v~~~~vlh~ 188 (283)
...|+|+=.|.|.+...++-......++.+|. |..++..++ .+|+..+.||-..+-| .+|=|.+..+
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLl--- 271 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLL--- 271 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeeccc---
Confidence 36799999999999985554445567899999 887766543 4666677777665434 2776655432
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
|..+ +=---+.++|+| .+||.+-|.+.+-.++
T Consensus 272 -PSse--~~W~~A~k~Lk~-eggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 272 -PSSE--QGWPTAIKALKP-EGGSILHIHENVKDSD 303 (351)
T ss_pred -cccc--cchHHHHHHhhh-cCCcEEEEeccccccc
Confidence 2111 112234467778 3134677777766555
No 380
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=50.54 E-value=1.2e+02 Score=26.50 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=73.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeE-EEeec-hHHHhcCCC-CCCeEEEEcCCCC-C---CC--CceEEEecccccCC
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKC-TVLDL-PHVVANLPE-ADNLKYIAGDMFQ-F---IP--PADAFLFKLVFHGL 189 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~---~p--~~D~v~~~~vlh~~ 189 (283)
..+++|+=||.|.+...+..+. .++ ...|+ |..++.-+. -....++..|..+ . ++ +.|+++...-...|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~F 80 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDF 80 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcch
Confidence 3589999999999999998885 553 46677 555544332 1224556666665 2 22 57888887766666
Q ss_pred Chh--------HHHHH---HHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHH
Q 023384 190 GDE--------DGLKI---LKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKL 258 (283)
Q Consensus 190 ~d~--------~~~~i---L~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 258 (283)
+-. ..-.+ +.++...++| +++|+|.+..= .. .+..+.++|.+.
T Consensus 81 S~aG~r~~~~D~R~~L~~~~~r~I~~~~P-----~~fv~ENV~gl------------~~---------~~~~~~~~i~~~ 134 (328)
T COG0270 81 SIAGKRRGYDDPRGSLFLEFIRLIEQLRP-----KFFVLENVKGL------------LS---------SKGQTFDEIKKE 134 (328)
T ss_pred hhcCcccCCcCccceeeHHHHHHHHhhCC-----CEEEEecCchH------------Hh---------cCchHHHHHHHH
Confidence 521 22222 3334444454 66777754320 00 044578999999
Q ss_pred HHHCCCCe
Q 023384 259 FFDACFSH 266 (283)
Q Consensus 259 l~~aGf~~ 266 (283)
|++.|+.+
T Consensus 135 L~~~GY~~ 142 (328)
T COG0270 135 LEELGYGV 142 (328)
T ss_pred HHHcCCcc
Confidence 99999973
No 381
>PRK06223 malate dehydrogenase; Reviewed
Probab=50.53 E-value=1.1e+02 Score=26.29 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=34.7
Q ss_pred CeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhc-C----CC----CCCeEEEE-cCCCCCCCCceEEEecc
Q 023384 120 GSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVAN-L----PE----ADNLKYIA-GDMFQFIPPADAFLFKL 184 (283)
Q Consensus 120 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a----~~----~~rv~~~~-~d~~~~~p~~D~v~~~~ 184 (283)
.+|.=||+|. |......+......+++++|+ ++.... + .. ....++.. .|+ +.+.++|+|++.-
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence 4788899987 555544444332128999997 332211 0 00 11233332 444 3455789998753
No 382
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=50.23 E-value=57 Score=29.20 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=36.3
Q ss_pred EEEEcCC-ccHHHHHHHHHCCCC-eEEEeec-hHHHhcC-C--CCCCeEEEEcCCCCC--C----CCceEEEecc
Q 023384 122 LVDVGGG-NGSLSRIISEAFPGI-KCTVLDL-PHVVANL-P--EADNLKYIAGDMFQF--I----PPADAFLFKL 184 (283)
Q Consensus 122 vlDvGgG-~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a-~--~~~rv~~~~~d~~~~--~----p~~D~v~~~~ 184 (283)
|+=+||| .|......+.+.+.. ++++.|. .+.++.. . ...++++...|..++ + .+.|+|+..-
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 4567763 444444444445544 8899998 5544332 2 367999999999873 2 3579988654
No 383
>PRK10458 DNA cytosine methylase; Provisional
Probab=49.76 E-value=1.7e+02 Score=27.27 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=23.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeE-EEeec
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKC-TVLDL 150 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~-~~~D~ 150 (283)
.-+++|+=||.|.+...+-.+ +.++ ..+|+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Ei 118 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEW 118 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEec
Confidence 358999999999999999776 3443 45677
No 384
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=49.54 E-value=47 Score=26.35 Aligned_cols=55 Identities=7% Similarity=0.057 Sum_probs=32.6
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeee
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 268 (283)
|......++.+++.+.++| |..+++.+. +.... . ......+-..|++.||+.+.
T Consensus 133 ~~~~~~~~i~~~~~~~~~~---g~Iil~Hd~---~~~~~-----t---------------~~~l~~~i~~l~~~Gy~~vt 186 (191)
T TIGR02764 133 WKNPGVESIVDRVVKNTKP---GDIILLHAS---DSAKQ-----T---------------VKALPTIIKKLKEKGYEFVT 186 (191)
T ss_pred cCCCCHHHHHHHHHhcCCC---CCEEEEeCC---CCcHh-----H---------------HHHHHHHHHHHHHCCCEEEE
Confidence 3333344678888888998 666666651 11100 0 00245677788899998765
Q ss_pred E
Q 023384 269 I 269 (283)
Q Consensus 269 ~ 269 (283)
+
T Consensus 187 l 187 (191)
T TIGR02764 187 I 187 (191)
T ss_pred H
Confidence 4
No 385
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=49.51 E-value=16 Score=33.64 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=47.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEE------Eeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCCh
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCT------VLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGD 191 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~------~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d 191 (283)
.++|+=||||+=..+.++--+-..++++ ++|. +..-+.|.+ +.. ...+..+..+.+|+|++. .||
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~-dGF--~v~~~~Ea~~~ADvVviL-----lPD 107 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE-NGF--KVGTYEELIPQADLVINL-----TPD 107 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh-cCC--ccCCHHHHHHhCCEEEEc-----CCh
Confidence 4899999998644444333222334444 2222 112222221 222 222322235679999884 366
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
..-..+-+++.+.||| |..|.+.
T Consensus 108 t~q~~v~~~i~p~LK~---Ga~L~fs 130 (487)
T PRK05225 108 KQHSDVVRAVQPLMKQ---GAALGYS 130 (487)
T ss_pred HHHHHHHHHHHhhCCC---CCEEEec
Confidence 6566777999999999 4555443
No 386
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=49.50 E-value=23 Score=27.67 Aligned_cols=100 Identities=15% Similarity=0.081 Sum_probs=55.2
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-CCCeE-EEEcCCCCCC----CCceEEEecccccCCC---
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-ADNLK-YIAGDMFQFI----PPADAFLFKLVFHGLG--- 190 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~rv~-~~~~d~~~~~----p~~D~v~~~~vlh~~~--- 190 (283)
++.+-+|...-. ...++-++-..++..++... ++.-.+ .+|+. +.+.||-++. ..||.+.+.+++.|..
T Consensus 3 ~~g~V~GS~~Pw-vEv~aL~~GA~~iltveyn~-L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLGR 80 (177)
T PF03269_consen 3 KSGLVVGSMQPW-VEVMALQHGAAKILTVEYNK-LEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGR 80 (177)
T ss_pred ceEEEEecCCch-hhHHHHHcCCceEEEEeecc-cccCcccccccccccHHHHHHHHHHhhccchhhheechhccccccc
Confidence 456666665333 33344444455555555422 111111 33443 3334444321 2489888887776552
Q ss_pred --h----hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 191 --D----EDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 191 --d----~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
| .--.+.++++++.||| ||.+++.-++-++.
T Consensus 81 YGDPidp~Gdl~~m~~i~~vLK~---GG~L~l~vPvG~d~ 117 (177)
T PF03269_consen 81 YGDPIDPIGDLRAMAKIKCVLKP---GGLLFLGVPVGTDA 117 (177)
T ss_pred cCCCCCccccHHHHHHHHHhhcc---CCeEEEEeecCCcc
Confidence 1 1124567889999999 79888887776544
No 387
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=49.45 E-value=20 Score=27.39 Aligned_cols=40 Identities=18% Similarity=0.088 Sum_probs=28.7
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
...-=+.||||.=....+.++|+++...+--+.....+++
T Consensus 57 ~~~GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~ 96 (143)
T TIGR01120 57 VDGGILICGTGIGMSIAANKFAGIRAALCSEPYMAQMSRL 96 (143)
T ss_pred CceEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 3344567999998888999999999766654555554443
No 388
>PRK07680 late competence protein ComER; Validated
Probab=49.12 E-value=49 Score=28.03 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=44.1
Q ss_pred eEEEEcCCc--cHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCCCCCCceEEEecccccCCChhHH
Q 023384 121 SLVDVGGGN--GSLSRIISEAF--PGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDG 194 (283)
Q Consensus 121 ~vlDvGgG~--G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~ 194 (283)
+|.=||+|. +.++..+.+.. +...+++.|. ++..+...+ ...+... .|..+-....|+|++.- ++...
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~-~~~~~~~~~aDiVilav-----~p~~~ 75 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVA-KTIEEVISQSDLIFICV-----KPLDI 75 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEE-CCHHHHHHhCCEEEEec-----CHHHH
Confidence 355677654 22334444432 1125788887 544443322 1123321 22221133589887754 57777
Q ss_pred HHHHHHHHHhhcc
Q 023384 195 LKILKKRRAAIAS 207 (283)
Q Consensus 195 ~~iL~~~~~~L~p 207 (283)
..+++.+...+++
T Consensus 76 ~~vl~~l~~~l~~ 88 (273)
T PRK07680 76 YPLLQKLAPHLTD 88 (273)
T ss_pred HHHHHHHHhhcCC
Confidence 8889998888887
No 389
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=49.00 E-value=33 Score=29.58 Aligned_cols=83 Identities=14% Similarity=0.204 Sum_probs=45.6
Q ss_pred eEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC---CCCCceEEEecccccCCChhHH
Q 023384 121 SLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ---FIPPADAFLFKLVFHGLGDEDG 194 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~~D~v~~~~vlh~~~d~~~ 194 (283)
+|-=||+|. .+..+++.. .+.++++.|. ++..+...+.. +.. ..+..+ .....|+|++. .++...
T Consensus 2 ~Ig~IGlG~--mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g-~~~-~~s~~~~~~~~~~~dvIi~~-----vp~~~~ 72 (298)
T TIGR00872 2 QLGLIGLGR--MGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR-TTG-VANLRELSQRLSAPRVVWVM-----VPHGIV 72 (298)
T ss_pred EEEEEcchH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-Ccc-cCCHHHHHhhcCCCCEEEEE-----cCchHH
Confidence 355567654 333333322 4567888998 66555444311 111 111111 12346888775 355567
Q ss_pred HHHHHHHHHhhccCCCCcEEEE
Q 023384 195 LKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 195 ~~iL~~~~~~L~p~~~gg~lli 216 (283)
..+++.+...|++ |.++|
T Consensus 73 ~~v~~~l~~~l~~----g~ivi 90 (298)
T TIGR00872 73 DAVLEELAPTLEK----GDIVI 90 (298)
T ss_pred HHHHHHHHhhCCC----CCEEE
Confidence 7888999999988 55544
No 390
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=48.96 E-value=34 Score=27.96 Aligned_cols=85 Identities=20% Similarity=0.253 Sum_probs=47.2
Q ss_pred CCccHHHHHHHHHCC--CCeEEEee--chHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHHHHHHH
Q 023384 127 GGNGSLSRIISEAFP--GIKCTVLD--LPHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRR 202 (283)
Q Consensus 127 gG~G~~~~~l~~~~p--~~~~~~~D--~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~ 202 (283)
+|+|.....++.++- +.++++-. .|+..+.+.+.-......+...+.....|+|++.--++ ....+++.++
T Consensus 7 ~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~-----a~~~v~~~l~ 81 (211)
T COG2085 7 IGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFE-----AIPDVLAELR 81 (211)
T ss_pred eccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHH-----HHHhHHHHHH
Confidence 367777777777663 34555442 25555554432222233333332233589999976554 4456677777
Q ss_pred HhhccCCCCcEEEEEeeecC
Q 023384 203 AAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 203 ~~L~p~~~gg~lli~d~~~~ 222 (283)
..+. |+++ +|...|
T Consensus 82 ~~~~-----~KIv-ID~tnp 95 (211)
T COG2085 82 DALG-----GKIV-IDATNP 95 (211)
T ss_pred HHhC-----CeEE-EecCCC
Confidence 7765 5654 454444
No 391
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=48.88 E-value=1.6e+02 Score=25.81 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=51.5
Q ss_pred CeEEEEcC-Cc-cHHHHHHHHHCCCC-------eEEEeechHHHhcCCC------------CCCeEEEEcCCCCCCCCce
Q 023384 120 GSLVDVGG-GN-GSLSRIISEAFPGI-------KCTVLDLPHVVANLPE------------ADNLKYIAGDMFQFIPPAD 178 (283)
Q Consensus 120 ~~vlDvGg-G~-G~~~~~l~~~~p~~-------~~~~~D~~~~~~~a~~------------~~rv~~~~~d~~~~~p~~D 178 (283)
.+|.=||+ |. |..... .-...++ +.+++|+.+..+.++. ..++.+.. +-.+++.+.|
T Consensus 3 ~KV~IiGa~G~VG~~~a~-~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~-~~~~~~~daD 80 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLF-RIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITD-DPNVAFKDAD 80 (322)
T ss_pred eEEEEECCCcHHHHHHHH-HHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEec-CcHHHhCCCC
Confidence 47777886 54 443222 2222222 6888998544322221 12344443 3233556789
Q ss_pred EEEecccccCCCh-------hHHHHHHHHHHHhhccCC-CCcEEEEEe
Q 023384 179 AFLFKLVFHGLGD-------EDGLKILKKRRAAIASNG-ERGKVIIID 218 (283)
Q Consensus 179 ~v~~~~vlh~~~d-------~~~~~iL~~~~~~L~p~~-~gg~lli~d 218 (283)
+|++..-.-.-+. +...++++.+.+.++... |.+.++++.
T Consensus 81 ivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 81 WALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 9888654432222 234677777777775422 257777765
No 392
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.67 E-value=1.1e+02 Score=26.09 Aligned_cols=146 Identities=9% Similarity=0.021 Sum_probs=74.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------C------------CCeEEEEcCCCCCC
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------A------------DNLKYIAGDMFQFI 174 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~------------~rv~~~~~d~~~~~ 174 (283)
..+|.=||+|.=..+++..-...+.++++.|. ++.++.+.+ . .++++. .|. +..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~~ 81 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-EDL 81 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-HHh
Confidence 35788888886554444433444678999998 665544211 0 223322 233 234
Q ss_pred CCceEEEecccccCCCh-hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchh-hhh-----hhhhcc------ccc
Q 023384 175 PPADAFLFKLVFHGLGD-EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHE-LTE-----TKFLFD------IVM 241 (283)
Q Consensus 175 p~~D~v~~~~vlh~~~d-~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~-~~~-----~~~~~~------~~~ 241 (283)
.++|+|+.+-. .+ +....+++++.+.++| +.+++.+...-....... ... ...+++ +.-
T Consensus 82 ~~aD~Vieavp----e~~~~k~~~~~~l~~~~~~----~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~ve 153 (292)
T PRK07530 82 ADCDLVIEAAT----EDETVKRKIFAQLCPVLKP----EAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVE 153 (292)
T ss_pred cCCCEEEEcCc----CCHHHHHHHHHHHHhhCCC----CcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEE
Confidence 46898888531 22 2235778889999998 555553332211110000 000 000111 111
Q ss_pred ccc-cCCccCCHHHHHHHHHHCCCCeeeEEEcCC
Q 023384 242 SVN-ATGKERTESEWAKLFFDACFSHYKITPIFG 274 (283)
Q Consensus 242 ~~~-~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 274 (283)
+.. .++..-+.+....+++..|-+.+.+...++
T Consensus 154 i~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~pg 187 (292)
T PRK07530 154 LIRGIATDEATFEAAKEFVTKLGKTITVAEDFPA 187 (292)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcCC
Confidence 111 123334566778889998977765544454
No 393
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=48.40 E-value=38 Score=29.71 Aligned_cols=94 Identities=22% Similarity=0.302 Sum_probs=60.0
Q ss_pred cCCCCeEEEEc--CCccHHHHHHHHHCCCCeEEEeechHHHhcCCC--CC-CeEEEEcCCCCCC----C--CceEEEecc
Q 023384 116 FEGLGSLVDVG--GGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE--AD-NLKYIAGDMFQFI----P--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvG--gG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~-rv~~~~~d~~~~~----p--~~D~v~~~~ 184 (283)
++...+||=.| ||-|.+++.|+++.-...++....++-.+.+++ .+ -+.+...|+.+.. + .+|+|+-.-
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 56678999998 677889999999986533444444444444443 22 3344555544421 1 388887633
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
. ...+.+..++|++ +|+++.+-...
T Consensus 220 -----G----~~~~~~~l~~l~~---~G~lv~ig~~~ 244 (326)
T COG0604 220 -----G----GDTFAASLAALAP---GGRLVSIGALS 244 (326)
T ss_pred -----C----HHHHHHHHHHhcc---CCEEEEEecCC
Confidence 2 2457778889998 69988887655
No 394
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=48.27 E-value=1.5e+02 Score=24.01 Aligned_cols=87 Identities=16% Similarity=0.225 Sum_probs=50.6
Q ss_pred CCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCC------CCceEEEecccccCCChh--HHH
Q 023384 127 GGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFI------PPADAFLFKLVFHGLGDE--DGL 195 (283)
Q Consensus 127 gG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~------p~~D~v~~~~vlh~~~d~--~~~ 195 (283)
|.+|.....+++.- .+.++|.+=. +.-+.. .+.+...+.|+|++. .++|+|+...-.. ++++ ...
T Consensus 7 gAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~---~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~-~~~~~~~~~ 82 (211)
T COG2910 7 GASGKAGSRILKEALKRGHEVTAIVRNASKLAA---RQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG-ASDNDELHS 82 (211)
T ss_pred ecCchhHHHHHHHHHhCCCeeEEEEeChHhccc---cccceeecccccChhhhHhhhcCCceEEEeccCC-CCChhHHHH
Confidence 56788777776643 2455666655 333322 257888999999842 2599998865432 1332 234
Q ss_pred HHHHHHHHhhccCCCCcEEEEEe
Q 023384 196 KILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 196 ~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+..+.+...|+..+ -.|++++-
T Consensus 83 k~~~~li~~l~~ag-v~RllVVG 104 (211)
T COG2910 83 KSIEALIEALKGAG-VPRLLVVG 104 (211)
T ss_pred HHHHHHHHHHhhcC-CeeEEEEc
Confidence 44555666666311 24666665
No 395
>PRK06482 short chain dehydrogenase; Provisional
Probab=48.17 E-value=1.6e+02 Score=24.51 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=33.2
Q ss_pred CeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ 172 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~ 172 (283)
+++| |-||+|..+..+++.+ .+.++++.+. ++.++...+ ..++.++..|+.+
T Consensus 3 k~vl-VtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~ 59 (276)
T PRK06482 3 KTWF-ITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTD 59 (276)
T ss_pred CEEE-EecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCC
Confidence 4566 4455777777776654 3567788777 444433222 3578888999987
No 396
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=47.89 E-value=28 Score=26.42 Aligned_cols=30 Identities=27% Similarity=0.373 Sum_probs=18.7
Q ss_pred EEcCCcc--HHHHHHH--HHCCCCeEEEeec-hHH
Q 023384 124 DVGGGNG--SLSRIIS--EAFPGIKCTVLDL-PHV 153 (283)
Q Consensus 124 DvGgG~G--~~~~~l~--~~~p~~~~~~~D~-~~~ 153 (283)
|||++.| .....++ ...|..+++.++. |..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~ 35 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSN 35 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHH
Confidence 8999999 6655554 4568899999998 654
No 397
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=47.79 E-value=22 Score=27.23 Aligned_cols=39 Identities=23% Similarity=0.136 Sum_probs=28.3
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
..-=+.||||.=....+.++|+++...+--+.....+++
T Consensus 57 ~~GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~ 95 (144)
T TIGR00689 57 SLGILICGTGIGMSIAANKFKGIRAALCVDEYTAALARQ 95 (144)
T ss_pred ceEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 344456999999999999999999766654555555443
No 398
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=47.21 E-value=2.2e+02 Score=25.87 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=56.6
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------------CCCeEEEEcCCCCCCCCceE
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------------------ADNLKYIAGDMFQFIPPADA 179 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------------~~rv~~~~~d~~~~~p~~D~ 179 (283)
.+|--||=|.=.+-.+++-+-.+.+++++|+ +..++..+. .++.+. +-|+. .....|+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra-Ttd~~-~l~~~dv 87 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA-TTDPE-ELKECDV 87 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE-ecChh-hcccCCE
Confidence 6677777665444444444445788999999 777766553 111111 11111 1124677
Q ss_pred EEecc--cccC--CCh-hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 180 FLFKL--VFHG--LGD-EDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 180 v~~~~--vlh~--~~d-~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
++++- -|-. -+| .-..+..+.+.+.|++ |-++|+|...+..
T Consensus 88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~k----G~LVIlEST~~PG 133 (436)
T COG0677 88 FIICVPTPLKKYREPDLSYVESAARSIAPVLKK----GDLVILESTTPPG 133 (436)
T ss_pred EEEEecCCcCCCCCCChHHHHHHHHHHHHhcCC----CCEEEEecCCCCC
Confidence 66532 2221 122 3356677888899998 8899999766544
No 399
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=47.11 E-value=26 Score=28.21 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANL 157 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a 157 (283)
..+..|||-=||+|..+.+..+. +-+++++|+ ++..+.|
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIA 229 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHh
Confidence 45689999999999999887776 567999999 7666554
No 400
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=47.05 E-value=97 Score=26.55 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=27.5
Q ss_pred CeEEEEcCCccHHHHHHHHHCCC----CeEEEeec
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPG----IKCTVLDL 150 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~----~~~~~~D~ 150 (283)
..||=+|++.|....-|...|++ ++++.+|.
T Consensus 62 ~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp 96 (300)
T PHA03108 62 STIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDG 96 (300)
T ss_pred ceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECC
Confidence 59999999999999999998887 57888886
No 401
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=46.93 E-value=59 Score=28.15 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=46.9
Q ss_pred EcCCc-cHHHHHHHHHCCCC-eEEEeechH-HH-----h--cCCC--CCCeEEEEcCCCCCCCCceEEEecccccCC---
Q 023384 125 VGGGN-GSLSRIISEAFPGI-KCTVLDLPH-VV-----A--NLPE--ADNLKYIAGDMFQFIPPADAFLFKLVFHGL--- 189 (283)
Q Consensus 125 vGgG~-G~~~~~l~~~~p~~-~~~~~D~~~-~~-----~--~a~~--~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~--- 189 (283)
||+|. |......+...+-. +.+++|+.+ .. + .+.. ..++.+..+| .+.+.++|+|++..-.-.-
T Consensus 2 IGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 2 IGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD-YSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCC-HHHHCCCCEEEECCCCCCCCCC
Confidence 45554 44444434333333 588899722 11 1 1111 2345555443 2345578999886544221
Q ss_pred Chh----HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 190 GDE----DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 190 ~d~----~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
++. ....+++++.+.++...|.++++++.
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 221 24566666666654322357777765
No 402
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=46.32 E-value=29 Score=29.77 Aligned_cols=50 Identities=24% Similarity=0.410 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCe----EEEeechHHHhcCCCCCCeEEEE
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIK----CTVLDLPHVVANLPEADNLKYIA 167 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~----~~~~D~~~~~~~a~~~~rv~~~~ 167 (283)
+...||=+|++.|....-|.+.||+.+ ++.+|..+-....++...|++++
T Consensus 58 ~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~ 111 (294)
T PF01358_consen 58 GPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQ 111 (294)
T ss_dssp T-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEE
T ss_pred CceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeeh
Confidence 346899999999999999999999865 89999844444444444476665
No 403
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=46.30 E-value=2.3e+02 Score=25.63 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=50.3
Q ss_pred eEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCC---------------CCeEEEE-cCCCCCCCCceEEEe
Q 023384 121 SLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEA---------------DNLKYIA-GDMFQFIPPADAFLF 182 (283)
Q Consensus 121 ~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~rv~~~~-~d~~~~~p~~D~v~~ 182 (283)
+|-=||.|. |.-...++. . +.+++++|+ ++.++..++. .+.++.. .|..+.....|+|+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-Q-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-h-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 355567763 333333333 2 578999999 7776655430 2222221 122222345788877
Q ss_pred ccccc-C-----CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 183 KLVFH-G-----LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 183 ~~vlh-~-----~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
+-.-- + ++-....++++.+.+ +++ |.++|.+...+.
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~----g~lVV~~STv~p 121 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INP----YAVMVIKSTVPV 121 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHh-cCC----CCEEEEeeecCC
Confidence 54311 0 011344566777776 676 677777766554
No 404
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=46.09 E-value=1.2e+02 Score=26.26 Aligned_cols=98 Identities=9% Similarity=0.077 Sum_probs=46.7
Q ss_pred CeEEEEcCCc-cHHHHHHHHHCCCCeEEEeechHHHhcCC------C----CCCeEEE-EcCCCCCCCCceEEEeccccc
Q 023384 120 GSLVDVGGGN-GSLSRIISEAFPGIKCTVLDLPHVVANLP------E----ADNLKYI-AGDMFQFIPPADAFLFKLVFH 187 (283)
Q Consensus 120 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~~~~~~~a~------~----~~rv~~~-~~d~~~~~p~~D~v~~~~vlh 187 (283)
.+|-=||+|. |......+......+++++|..+.+..++ . ....++. ..|+. +..+.|+|++..-.-
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~-~~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA-DTANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH-HhCCCCEEEEcCCCC
Confidence 4677888876 33333333332223799999822222211 0 1112222 34543 355689988865421
Q ss_pred CCCh-------hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 188 GLGD-------EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 188 ~~~d-------~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.-++ ....++++.+.+.+++..+.+.++++.
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~t 118 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVS 118 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1111 134455666555544311146666654
No 405
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=46.04 E-value=24 Score=27.10 Aligned_cols=37 Identities=16% Similarity=0.040 Sum_probs=27.9
Q ss_pred EEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 123 VDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 123 lDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
-=+-||||.=....+.++|+++...+--+.....+++
T Consensus 62 GIliCGtGiG~siaANK~~GIRAA~~~d~~~A~~ar~ 98 (148)
T PRK05571 62 GILICGTGIGMSIAANKVKGIRAALCHDTYSAHLARE 98 (148)
T ss_pred EEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 3345999998888999999999876655655555554
No 406
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=45.80 E-value=2.1e+02 Score=25.11 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=51.5
Q ss_pred eEEEEcCC-ccHHHHH-HHHHCCCCeEEEeechHHHhcCC--C--------CCCeEEEE-cCCCCCCCCceEEEeccccc
Q 023384 121 SLVDVGGG-NGSLSRI-ISEAFPGIKCTVLDLPHVVANLP--E--------ADNLKYIA-GDMFQFIPPADAFLFKLVFH 187 (283)
Q Consensus 121 ~vlDvGgG-~G~~~~~-l~~~~p~~~~~~~D~~~~~~~a~--~--------~~rv~~~~-~d~~~~~p~~D~v~~~~vlh 187 (283)
+|.=||.| .|..... ++........+++|+++-..... . ..++.... +| .++..++|+|++..-.-
T Consensus 2 KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~-y~~~~~aDiVvitAG~p 80 (313)
T COG0039 2 KVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGD-YEDLKGADIVVITAGVP 80 (313)
T ss_pred eEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCC-hhhhcCCCEEEEeCCCC
Confidence 45567763 2332222 22222334788999862211111 1 23344444 34 34556799998876443
Q ss_pred CCCh-------hHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 188 GLGD-------EDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 188 ~~~d-------~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
.-+. +...+|++.+.+.++...+.+.++++..
T Consensus 81 rKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtN 119 (313)
T COG0039 81 RKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTN 119 (313)
T ss_pred CCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 3222 2356777888777765333577777663
No 407
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=45.70 E-value=83 Score=31.15 Aligned_cols=149 Identities=14% Similarity=0.072 Sum_probs=79.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEEcCCCCCC
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------------------ADNLKYIAGDMFQFI 174 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~rv~~~~~d~~~~~ 174 (283)
..+|-=||+|+=...++.+-+..+.++++.|. ++.++.+.+ ..|+++.. |+ +.+
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~-~~~ 412 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL-DY-SGF 412 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC-CH-HHh
Confidence 35799999987555555555556899999998 666554321 14554432 33 234
Q ss_pred CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccc--------c-c
Q 023384 175 PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV--------N-A 245 (283)
Q Consensus 175 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~ 245 (283)
.+.|+|+=. +.-++.- ..++++++-+.++| +..+.-....++-..-............+..+. - .
T Consensus 413 ~~aDlViEA-v~E~l~~--K~~vf~~l~~~~~~---~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv 486 (737)
T TIGR02441 413 KNADMVIEA-VFEDLSL--KHKVIKEVEAVVPP---HCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEII 486 (737)
T ss_pred ccCCeehhh-ccccHHH--HHHHHHHHHhhCCC---CcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEe
Confidence 457877643 4444333 45889999999999 343333333222111000000000111111110 0 1
Q ss_pred CCc---cCCHHHHHHHHHHCCCCeeeEEEcCCc
Q 023384 246 TGK---ERTESEWAKLFFDACFSHYKITPIFGM 275 (283)
Q Consensus 246 ~~~---~~t~~e~~~ll~~aGf~~~~~~~~~~~ 275 (283)
.+. .-+.+...+++++.|-..+.+...+|+
T Consensus 487 ~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGF 519 (737)
T TIGR02441 487 THDGTSKDTLASAVAVGLKQGKVVIVVKDGPGF 519 (737)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCc
Confidence 111 224556678888999888777666664
No 408
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=45.34 E-value=19 Score=22.72 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=10.4
Q ss_pred HHHHHCCCCeeeEE
Q 023384 257 KLFFDACFSHYKIT 270 (283)
Q Consensus 257 ~ll~~aGf~~~~~~ 270 (283)
+||++|||.+-+-.
T Consensus 31 ~WL~~aGF~~G~~v 44 (57)
T PF08845_consen 31 KWLEEAGFTIGDPV 44 (57)
T ss_pred hhhHHhCCCCCCEE
Confidence 58999999765433
No 409
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=45.28 E-value=34 Score=30.09 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=25.7
Q ss_pred CCCCeEEEEcCCccHHHHH--HHHHCCCCeEEEeec
Q 023384 117 EGLGSLVDVGGGNGSLSRI--ISEAFPGIKCTVLDL 150 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~--l~~~~p~~~~~~~D~ 150 (283)
+..-.||-||||+|..+.+ +.+++|.-++.++|.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep 72 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEP 72 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecc
Confidence 3446899999999998775 677787777666653
No 410
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=44.96 E-value=16 Score=27.82 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=26.9
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
...-=+.||||.=....+.++|+++...+.-+.....+++
T Consensus 57 ~d~GIliCgtGiG~~iaANK~~GIrAa~~~d~~~A~~ar~ 96 (140)
T PF02502_consen 57 ADRGILICGTGIGMSIAANKVPGIRAALCSDPYSAKMARE 96 (140)
T ss_dssp SSEEEEEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHH
T ss_pred CCeEEEEcCCChhhhhHhhcCCCEEEEeeCCHHHHHHHHH
Confidence 3345567999999999999999999776655555544443
No 411
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=44.79 E-value=2.2e+02 Score=24.97 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=38.4
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCC-eEEEeec-hHHH-----hcCCC----CCCeEEEE-cCCCCCCCCceEEEecc
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGI-KCTVLDL-PHVV-----ANLPE----ADNLKYIA-GDMFQFIPPADAFLFKL 184 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~-----~~a~~----~~rv~~~~-~d~~~~~p~~D~v~~~~ 184 (283)
.+|.=||+|+=..+.+..-..+++ .++++|+ ++.. +.... ....++.. +|+ +.+.++|+|+...
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 689999988744555554445564 7999998 5422 11111 22345553 555 4566799998843
No 412
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=44.49 E-value=2.2e+02 Score=24.93 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=40.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHh----cCCCCCCeEEEEcCCCCC------CCCceEEEec
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVA----NLPEADNLKYIAGDMFQF------IPPADAFLFK 183 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~----~a~~~~rv~~~~~d~~~~------~p~~D~v~~~ 183 (283)
+...+||=.| |+|..+..+++.+ .+.++++++. +.... ......++.++.+|+.++ +...|+|+-.
T Consensus 8 ~~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 86 (353)
T PLN02896 8 SATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHV 86 (353)
T ss_pred cCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEEC
Confidence 3456788665 5788777777765 3457777665 32211 111235788999999873 1246766554
Q ss_pred cc
Q 023384 184 LV 185 (283)
Q Consensus 184 ~v 185 (283)
..
T Consensus 87 A~ 88 (353)
T PLN02896 87 AA 88 (353)
T ss_pred Cc
Confidence 43
No 413
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=44.24 E-value=1.1e+02 Score=26.42 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=47.6
Q ss_pred EEcCCc-cHHHHHHHHHCCC-CeEEEeec-hHHHh-cCCC-------CCCeEEE-EcCCCCCCCCceEEEecccccC---
Q 023384 124 DVGGGN-GSLSRIISEAFPG-IKCTVLDL-PHVVA-NLPE-------ADNLKYI-AGDMFQFIPPADAFLFKLVFHG--- 188 (283)
Q Consensus 124 DvGgG~-G~~~~~l~~~~p~-~~~~~~D~-~~~~~-~a~~-------~~rv~~~-~~d~~~~~p~~D~v~~~~vlh~--- 188 (283)
=||+|. |......+...+- .+++++|+ .+.+. .+.. ...+++. ..| .+.+.++|++++..-.-.
T Consensus 3 iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~~~ 81 (300)
T cd00300 3 IIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRKPG 81 (300)
T ss_pred EECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCCCC
Confidence 367765 4444443434333 35899998 43221 1111 1223333 344 335557899988654321
Q ss_pred CChh----HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 189 LGDE----DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 189 ~~d~----~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.+.. ....+++++.+.++...|.|+++++.
T Consensus 82 ~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 82 ETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 1111 24566776766665422357777665
No 414
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=44.17 E-value=63 Score=27.54 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=60.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCCCCC---CceEEEecccccCCChh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIP---PADAFLFKLVFHGLGDE 192 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p---~~D~v~~~~vlh~~~d~ 192 (283)
+.+...-+|+|...|.++-.+.++ ++.++.+|-..+....-..++|+....|-|+-.| +-|-.++-.| +
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV------E 280 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV------E 280 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh------c
Confidence 456688999999999999999988 8899999986666555557889999999988333 2554444332 1
Q ss_pred HHHHHHHHHHHhhcc
Q 023384 193 DGLKILKKRRAAIAS 207 (283)
Q Consensus 193 ~~~~iL~~~~~~L~p 207 (283)
+-.++-..+...|..
T Consensus 281 kP~rv~~li~~Wl~n 295 (358)
T COG2933 281 KPARVAALIAKWLVN 295 (358)
T ss_pred CcHHHHHHHHHHHHc
Confidence 223555666667775
No 415
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=43.96 E-value=1.9e+02 Score=25.04 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=46.5
Q ss_pred eEEEEcC-Cc-cHHHHHHHHHCCCC-eEEEeechHHHhcCCC------------CCCeEEEE-cCCCCCCCCceEEEecc
Q 023384 121 SLVDVGG-GN-GSLSRIISEAFPGI-KCTVLDLPHVVANLPE------------ADNLKYIA-GDMFQFIPPADAFLFKL 184 (283)
Q Consensus 121 ~vlDvGg-G~-G~~~~~l~~~~p~~-~~~~~D~~~~~~~a~~------------~~rv~~~~-~d~~~~~p~~D~v~~~~ 184 (283)
+|.=+|+ |. |......+...+.. +++++|..+..+.++. ....++.. .| .+.+.++|++++..
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViita 80 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIITA 80 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEec
Confidence 4566664 33 44444444443433 5888898432222211 11123322 34 23456789998865
Q ss_pred cccCCCh---h----HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 185 VFHGLGD---E----DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 185 vlh~~~d---~----~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
-.-.-++ . ...++++.+.+.++...+.++++++.
T Consensus 81 g~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~ 121 (309)
T cd05294 81 GVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT 121 (309)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4322221 1 12355666665554311247776665
No 416
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=43.88 E-value=83 Score=30.97 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=43.8
Q ss_pred CeEEEEcCCc--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHH
Q 023384 120 GSLVDVGGGN--GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 120 ~~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~ 196 (283)
.+|.=||+|. +.++..+.+.....+++++|. ++.++.+.+..-......|..+....+|+|++.- +......
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~~ 78 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAV-----PVLAMEK 78 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECC-----CHHHHHH
Confidence 5677777653 222223333322246888898 5555544331111000111111133589988854 4456778
Q ss_pred HHHHHHHhhcc
Q 023384 197 ILKKRRAAIAS 207 (283)
Q Consensus 197 iL~~~~~~L~p 207 (283)
+++.+.+.+++
T Consensus 79 vl~~l~~~~~~ 89 (735)
T PRK14806 79 VLADLKPLLSE 89 (735)
T ss_pred HHHHHHHhcCC
Confidence 88888888886
No 417
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=43.69 E-value=10 Score=26.41 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=14.4
Q ss_pred EEEEcCCccHHHHHHHHHC
Q 023384 122 LVDVGGGNGSLSRIISEAF 140 (283)
Q Consensus 122 vlDvGgG~G~~~~~l~~~~ 140 (283)
=+|||||.|....+-.+.+
T Consensus 6 NIDIGcG~GNTmda~fRsc 24 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRSC 24 (124)
T ss_pred ccccccCCCcchhhhhhcc
Confidence 3799999999877655544
No 418
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=43.61 E-value=23 Score=31.83 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=35.4
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDM 170 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~ 170 (283)
..|+-||+|...+..++...-.+.+++++|- +..-+...- ..|++|.....
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~ 57 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA 57 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc
Confidence 4688899998888777777778899999997 444333221 56776655433
No 419
>PRK05993 short chain dehydrogenase; Provisional
Probab=43.51 E-value=2e+02 Score=24.14 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=55.1
Q ss_pred CeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC--C------------CCceEEEe
Q 023384 120 GSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF--I------------PPADAFLF 182 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~--~------------p~~D~v~~ 182 (283)
++||-.|| +|..+.++++.+ .+.++++.+. ++.++... ..++.++..|+.++ . +..|+++.
T Consensus 5 k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~ 82 (277)
T PRK05993 5 RSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALE-AEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFN 82 (277)
T ss_pred CEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEE
Confidence 56776665 566666666554 3678888887 55444332 23577888888772 1 12477766
Q ss_pred cccc------cCCChhHH-----------HHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 183 KLVF------HGLGDEDG-----------LKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 183 ~~vl------h~~~d~~~-----------~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
+... .+.+.++. ..+.+.+.+.|+..+ .|+++.+...
T Consensus 83 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS~ 136 (277)
T PRK05993 83 NGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSSI 136 (277)
T ss_pred CCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECCh
Confidence 4322 22222221 233566777776522 4677776654
No 420
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.53 E-value=1.8e+02 Score=23.49 Aligned_cols=65 Identities=11% Similarity=0.204 Sum_probs=40.1
Q ss_pred CeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcC----CC-CCCeEEEEcCCCCC--C-----------CCce
Q 023384 120 GSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANL----PE-ADNLKYIAGDMFQF--I-----------PPAD 178 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a----~~-~~rv~~~~~d~~~~--~-----------p~~D 178 (283)
.++|-.| |+|.++..+++++ .+.++++++. ++..+.. .. ..++.++..|+.++ + +..|
T Consensus 8 ~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 86 (239)
T PRK07666 8 KNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSID 86 (239)
T ss_pred CEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCcc
Confidence 5566665 5777777776654 4668888887 3322211 11 45788899998763 1 2357
Q ss_pred EEEeccc
Q 023384 179 AFLFKLV 185 (283)
Q Consensus 179 ~v~~~~v 185 (283)
+++....
T Consensus 87 ~vi~~ag 93 (239)
T PRK07666 87 ILINNAG 93 (239)
T ss_pred EEEEcCc
Confidence 7776543
No 421
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=42.41 E-value=2.1e+02 Score=24.09 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=50.8
Q ss_pred CCCeEEEEcCC-ccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCCCCCeEEEE-cCCCCC---C---CCceEEEeccccc
Q 023384 118 GLGSLVDVGGG-NGSLSRIISEAFPGIK-CTVLDL-PHVVANLPEADNLKYIA-GDMFQF---I---PPADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG-~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~rv~~~~-~d~~~~---~---p~~D~v~~~~vlh 187 (283)
...+||=+|+| .|..+..+++.. +.+ +++.|. ++..+.+++..--.++. .+..+. . ..+|+++-..
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~--- 195 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFS--- 195 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECC---
Confidence 45678888754 555666677765 444 777786 55555544311001111 111000 1 1378776532
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.. ...++...+.++| +|+++++-...
T Consensus 196 --G~---~~~~~~~~~~l~~---~G~iv~~G~~~ 221 (280)
T TIGR03366 196 --GA---TAAVRACLESLDV---GGTAVLAGSVF 221 (280)
T ss_pred --CC---hHHHHHHHHHhcC---CCEEEEeccCC
Confidence 11 1346778889999 79998877543
No 422
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=42.35 E-value=93 Score=28.47 Aligned_cols=97 Identities=11% Similarity=0.232 Sum_probs=50.7
Q ss_pred CeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCCCC---------------CeEEEEcCCCCCCCCceEEEe
Q 023384 120 GSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPEAD---------------NLKYIAGDMFQFIPPADAFLF 182 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~---------------rv~~~~~d~~~~~p~~D~v~~ 182 (283)
.+|-=||-| ..+..++..+ ...+++++|+ ++.++..+++. ++.+. .+. +.....|++++
T Consensus 7 mkI~vIGlG--yvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t-~~~-~~~~~advvii 82 (425)
T PRK15182 7 VKIAIIGLG--YVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFT-SEI-EKIKECNFYII 82 (425)
T ss_pred CeEEEECcC--cchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEE-eCH-HHHcCCCEEEE
Confidence 456666554 4433333332 2468999999 77776655311 11111 111 12335788876
Q ss_pred ccc--ccCC--Ch-hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 183 KLV--FHGL--GD-EDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 183 ~~v--lh~~--~d-~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
+-- .+.- +| .......+.+.+.|++ |.++|.+...+..
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~----g~lVI~~STv~pg 125 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTVLNR----GDIVVYESTVYPG 125 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHhcCC----CCEEEEecCCCCc
Confidence 442 1111 11 2334445678888887 6677776655543
No 423
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=42.10 E-value=1.4e+02 Score=26.36 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=22.0
Q ss_pred CCceEEEecccccCCChhHHHHHHHHHHHhhcc
Q 023384 175 PPADAFLFKLVFHGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 175 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p 207 (283)
..+|+|++. .|+.....+++++...+++
T Consensus 81 ~~ADiIIlA-----VPs~~i~~vl~~l~~~l~~ 108 (342)
T TIGR03376 81 KGADILVFV-----IPHQFLEGICKQLKGHVKP 108 (342)
T ss_pred hcCCEEEEE-----CChHHHHHHHHHHHhhcCC
Confidence 457888774 3777778889999999987
No 424
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=42.02 E-value=1.4e+02 Score=22.18 Aligned_cols=72 Identities=15% Similarity=0.058 Sum_probs=50.9
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHH
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 256 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 256 (283)
.|++++-+- -.|.+....|-.+...|.. +|.|.++.+-.... ...++.++.
T Consensus 46 vD~vllWwR---~~DgDL~D~LvDa~~~L~d---~G~IWvltPK~gr~-----------------------g~V~~~~I~ 96 (127)
T PF11253_consen 46 VDVVLLWWR---DDDGDLVDALVDARTNLAD---DGVIWVLTPKAGRP-----------------------GHVEPSDIR 96 (127)
T ss_pred ccEEEEEEE---CCcchHHHHHHHHHhhhcC---CCEEEEEccCCCCC-----------------------CCCCHHHHH
Confidence 677766332 1455677888888899997 79998877543221 123688999
Q ss_pred HHHHHCCCCeeeEEEcCC-cce
Q 023384 257 KLFFDACFSHYKITPIFG-MRF 277 (283)
Q Consensus 257 ~ll~~aGf~~~~~~~~~~-~~~ 277 (283)
+....||+...+...... +.+
T Consensus 97 eaA~taGL~~t~~~~v~~dWsg 118 (127)
T PF11253_consen 97 EAAPTAGLVQTKSCAVGDDWSG 118 (127)
T ss_pred HHHhhcCCeeeeeeccCCCccE
Confidence 999999999988877643 544
No 425
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=41.96 E-value=82 Score=26.76 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=44.8
Q ss_pred CeEEEEcCCc--cHHHHHHHHHC--CCCeEEEeec-h-HHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhH
Q 023384 120 GSLVDVGGGN--GSLSRIISEAF--PGIKCTVLDL-P-HVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDED 193 (283)
Q Consensus 120 ~~vlDvGgG~--G~~~~~l~~~~--p~~~~~~~D~-~-~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~ 193 (283)
.+|.=||+|. +.++..++++. +..++++.|. + +..+.......++. ..|..+.....|+|++.- ++++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~-~~~~~e~~~~aDvVilav-----~p~~ 77 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKG-THNKKELLTDANILFLAM-----KPKD 77 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceE-eCCHHHHHhcCCEEEEEe-----CHHH
Confidence 4677787663 22333344432 2246778886 3 33333222112332 222221223579988843 6777
Q ss_pred HHHHHHHHHHhhcc
Q 023384 194 GLKILKKRRAAIAS 207 (283)
Q Consensus 194 ~~~iL~~~~~~L~p 207 (283)
...+++.+...+++
T Consensus 78 ~~~vl~~l~~~~~~ 91 (279)
T PRK07679 78 VAEALIPFKEYIHN 91 (279)
T ss_pred HHHHHHHHHhhcCC
Confidence 78888998888887
No 426
>PTZ00325 malate dehydrogenase; Provisional
Probab=41.91 E-value=2.3e+02 Score=24.83 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=51.0
Q ss_pred CCeEEEEcC-Cc-cHHHHHHHHHCC-CCeEEEeechHHHhcCCC----CCCeEEEE----cCCCCCCCCceEEEeccccc
Q 023384 119 LGSLVDVGG-GN-GSLSRIISEAFP-GIKCTVLDLPHVVANLPE----ADNLKYIA----GDMFQFIPPADAFLFKLVFH 187 (283)
Q Consensus 119 ~~~vlDvGg-G~-G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~----~~rv~~~~----~d~~~~~p~~D~v~~~~vlh 187 (283)
..+|+=+|+ |. |......+.... .-+.+++|+......+.. ...+.+.. +|..+...+.|+|+...-..
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~~ 87 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGVP 87 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCCC
Confidence 358899986 55 554444333322 236888998211111111 12333332 22133455689888765443
Q ss_pred CCCh-------hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 188 GLGD-------EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 188 ~~~d-------~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.-+. ....++++++.++|+..++.+.+++..
T Consensus 88 ~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~S 125 (321)
T PTZ00325 88 RKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVS 125 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3221 133457888888887633334444443
No 427
>PLN02688 pyrroline-5-carboxylate reductase
Probab=41.89 E-value=84 Score=26.32 Aligned_cols=85 Identities=14% Similarity=0.229 Sum_probs=46.7
Q ss_pred eEEEEcCCc--cHHHHHHHHHC--CCCeEEEe-ec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHH
Q 023384 121 SLVDVGGGN--GSLSRIISEAF--PGIKCTVL-DL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDG 194 (283)
Q Consensus 121 ~vlDvGgG~--G~~~~~l~~~~--p~~~~~~~-D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~ 194 (283)
+|.=||+|. +..+..|+++. +..+++++ |. ++..+.+.+ ..+.. ..+..+-..+.|+|+++- +++..
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-~g~~~-~~~~~e~~~~aDvVil~v-----~~~~~ 74 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-LGVKT-AASNTEVVKSSDVIILAV-----KPQVV 74 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-cCCEE-eCChHHHHhcCCEEEEEE-----CcHHH
Confidence 355577663 33444455442 23367777 77 555444332 22322 112111123579888754 46667
Q ss_pred HHHHHHHHHhhccCCCCcEEEE
Q 023384 195 LKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 195 ~~iL~~~~~~L~p~~~gg~lli 216 (283)
..+++.+...+++ +.++|
T Consensus 75 ~~vl~~l~~~~~~----~~~iI 92 (266)
T PLN02688 75 KDVLTELRPLLSK----DKLLV 92 (266)
T ss_pred HHHHHHHHhhcCC----CCEEE
Confidence 8888888888887 56555
No 428
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=41.31 E-value=38 Score=23.04 Aligned_cols=25 Identities=8% Similarity=-0.017 Sum_probs=20.0
Q ss_pred cCCHHHHHHHHHHCCCCeeeEEEcC
Q 023384 249 ERTESEWAKLFFDACFSHYKITPIF 273 (283)
Q Consensus 249 ~~t~~e~~~ll~~aGf~~~~~~~~~ 273 (283)
+-.++++++.|++.||+++.+....
T Consensus 7 E~~Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 7 EEGLSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred cCCchHHHHHHHHCCCEEEecCCcc
Confidence 4467899999999999988775443
No 429
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=41.03 E-value=1.4e+02 Score=25.41 Aligned_cols=86 Identities=19% Similarity=0.173 Sum_probs=44.2
Q ss_pred eEEEEcCCccHHHH--HHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEc--C------CCC---C-CCCceEEEecccc
Q 023384 121 SLVDVGGGNGSLSR--IISEAFPGIKCTVLDLPHVVANLPEADNLKYIAG--D------MFQ---F-IPPADAFLFKLVF 186 (283)
Q Consensus 121 ~vlDvGgG~G~~~~--~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~--d------~~~---~-~p~~D~v~~~~vl 186 (283)
+|+=||+|.-.... .|+++ +.++++++.++.++..++ ..+..... + ..+ + ...+|++++.--
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk- 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA--GRDVTFLVRPKRAKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK- 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC--CCceEEEecHHHHHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec-
Confidence 57778877544333 33333 456778887544443332 11211111 1 111 1 235898877543
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
......+++.+...+.+ +..++.+
T Consensus 78 ----~~~~~~~~~~l~~~~~~---~~~ii~~ 101 (305)
T PRK12921 78 ----AYQLDAAIPDLKPLVGE---DTVIIPL 101 (305)
T ss_pred ----ccCHHHHHHHHHhhcCC---CCEEEEe
Confidence 22345678888888877 3444433
No 430
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=40.74 E-value=71 Score=26.92 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=27.1
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL 150 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~ 150 (283)
..|+=||+|...++.++..+-++.+++++|.
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk 56 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFER 56 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEec
Confidence 5699999999999888877778999999986
No 431
>PRK06181 short chain dehydrogenase; Provisional
Probab=40.54 E-value=1.9e+02 Score=23.80 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=31.2
Q ss_pred CeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCC-----CCCCeEEEEcCCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLP-----EADNLKYIAGDMFQ 172 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~-----~~~rv~~~~~d~~~ 172 (283)
.++|-. ||+|..+..+++.+ .+.++++.+. +...+... ...++.+...|+.+
T Consensus 2 ~~vlVt-Gasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~ 61 (263)
T PRK06181 2 KVVIIT-GASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSD 61 (263)
T ss_pred CEEEEe-cCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC
Confidence 356644 55666666665543 3567888887 33322211 14578888899877
No 432
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=40.53 E-value=1.6e+02 Score=28.75 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=26.8
Q ss_pred cCCccCCHHHHHHHHHHCCCCeeeEEEcCCcc
Q 023384 245 ATGKERTESEWAKLFFDACFSHYKITPIFGMR 276 (283)
Q Consensus 245 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 276 (283)
.-|.+.+.+++.+.|.+.||+.+.....+|..
T Consensus 159 ~~G~~i~~~~l~~~Lv~~gY~r~~~v~~~G~F 190 (655)
T TIGR00631 159 EVGKEIDRRELLRRLVELQYERNDVDFQRGTF 190 (655)
T ss_pred eCCCCcCHHHHHHHHHHcCCcccCccCCCceE
Confidence 45888999999999999999998877666643
No 433
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=40.05 E-value=6.3 Score=35.83 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=27.6
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEE
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIA 167 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~ 167 (283)
+|+=||+|...+..++..+-.+.+++++|. +.+-..... ..|+++..
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn 51 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTN 51 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEE
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccc
Confidence 478899998888888777778899999997 443222211 46777666
No 434
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=39.49 E-value=67 Score=28.31 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=47.7
Q ss_pred CCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeech-HHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHH
Q 023384 119 LGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDLP-HVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 119 ~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~ 196 (283)
.++|.=||.|+ |......++. -+.++++.|.+ ...+.+. ...+++ .+..+-...+|+|++.- ++++...
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d-~G~~ViV~~r~~~s~~~A~-~~G~~v--~sl~Eaak~ADVV~llL-----Pd~~t~~ 86 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRD-SGVEVVVGVRPGKSFEVAK-ADGFEV--MSVSEAVRTAQVVQMLL-----PDEQQAH 86 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHH-CcCEEEEEECcchhhHHHH-HcCCEE--CCHHHHHhcCCEEEEeC-----CChHHHH
Confidence 47888887763 3333333333 36788887753 2222222 122322 23222244689998854 4444456
Q ss_pred HH-HHHHHhhccCCCCcEEEEEee
Q 023384 197 IL-KKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 197 iL-~~~~~~L~p~~~gg~lli~d~ 219 (283)
++ +.+.+.|+| |.++++..
T Consensus 87 V~~~eil~~MK~----GaiL~f~h 106 (335)
T PRK13403 87 VYKAEVEENLRE----GQMLLFSH 106 (335)
T ss_pred HHHHHHHhcCCC----CCEEEECC
Confidence 65 568999999 55555543
No 435
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=39.35 E-value=94 Score=26.53 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=41.2
Q ss_pred CccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHHH---HHH
Q 023384 128 GNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKIL---KKR 201 (283)
Q Consensus 128 G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~iL---~~~ 201 (283)
|.|..+..+++.+ .+.++++.|. ++.++...+. .+.. ..+..+-..+.|+|+++-. +++....++ +.+
T Consensus 3 GlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~-~~s~~~~~~~advVil~vp----~~~~~~~v~~g~~~l 76 (288)
T TIGR01692 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAA-GAQA-AASPAEAAEGADRVITMLP----AGQHVISVYSGDEGI 76 (288)
T ss_pred cccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHc-CCee-cCCHHHHHhcCCEEEEeCC----ChHHHHHHHcCcchH
Confidence 4455555544443 3457889998 5555544321 1211 1111111224788887532 224455666 677
Q ss_pred HHhhccCCCCcEEEEE
Q 023384 202 RAAIASNGERGKVIII 217 (283)
Q Consensus 202 ~~~L~p~~~gg~lli~ 217 (283)
...+++ |.++|.
T Consensus 77 ~~~~~~----g~~vid 88 (288)
T TIGR01692 77 LPKVAK----GSLLID 88 (288)
T ss_pred hhcCCC----CCEEEE
Confidence 777887 565553
No 436
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=39.34 E-value=1.3e+02 Score=21.05 Aligned_cols=60 Identities=18% Similarity=0.130 Sum_probs=36.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeechH-HHhcCCCCCCeEEEEcCCCCCCCCceEEEec
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPH-VVANLPEADNLKYIAGDMFQFIPPADAFLFK 183 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~ 183 (283)
..+||=||||.-...+.-.-.--+.+++++.... ..+ +++++....+.+++.++|+|+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~-----~~i~~~~~~~~~~l~~~~lV~~a 67 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE-----GLIQLIRREFEEDLDGADLVFAA 67 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH-----TSCEEEESS-GGGCTTESEEEE-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh-----hHHHHHhhhHHHHHhhheEEEec
Confidence 4789999997666655433333456777776532 122 56777776665466678888864
No 437
>PLN02712 arogenate dehydrogenase
Probab=39.06 E-value=1.1e+02 Score=29.84 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=45.5
Q ss_pred CCCeEEEEcCCc--cHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCCCC-CCceEEEecccccCCChhHH
Q 023384 118 GLGSLVDVGGGN--GSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFI-PPADAFLFKLVFHGLGDEDG 194 (283)
Q Consensus 118 ~~~~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~-p~~D~v~~~~vlh~~~d~~~ 194 (283)
...+|.=||+|. |.++..+.+. +.++++.|.......+.+. .+.+ ..|..+-. ..+|+|+++- +....
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~~~A~~~-Gv~~-~~d~~e~~~~~aDvViLav-----P~~~~ 121 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQ--GHTVLAHSRSDHSLAARSL-GVSF-FLDPHDLCERHPDVILLCT-----SIIST 121 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHc-CCEE-eCCHHHHhhcCCCEEEEcC-----CHHHH
Confidence 336788898764 3344444433 4678888874333333321 2322 22222212 2479998854 55667
Q ss_pred HHHHHHHH-Hhhcc
Q 023384 195 LKILKKRR-AAIAS 207 (283)
Q Consensus 195 ~~iL~~~~-~~L~p 207 (283)
..+++.+. ..++|
T Consensus 122 ~~vl~~l~~~~l~~ 135 (667)
T PLN02712 122 ENVLKSLPLQRLKR 135 (667)
T ss_pred HHHHHhhhhhcCCC
Confidence 78888875 56787
No 438
>PRK08655 prephenate dehydrogenase; Provisional
Probab=38.99 E-value=93 Score=28.60 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=41.2
Q ss_pred eEEEEcC-C-ccHHHHHHHHHCCCCeEEEeec-hHHH-hcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHH
Q 023384 121 SLVDVGG-G-NGSLSRIISEAFPGIKCTVLDL-PHVV-ANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 121 ~vlDvGg-G-~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~ 196 (283)
+|.=||| | -|......+.. .+.++++.|. ++.. +.+.+ ..+.+ ..|..+....+|+|+++- +.+....
T Consensus 2 kI~IIGG~G~mG~slA~~L~~-~G~~V~v~~r~~~~~~~~a~~-~gv~~-~~~~~e~~~~aDvVIlav-----p~~~~~~ 73 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKE-KGFEVIVTGRDPKKGKEVAKE-LGVEY-ANDNIDAAKDADIVIISV-----PINVTED 73 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHH-CCCEEEEEECChHHHHHHHHH-cCCee-ccCHHHHhccCCEEEEec-----CHHHHHH
Confidence 4666762 3 44332222222 2357788887 4443 22222 12221 112222234589998855 4445567
Q ss_pred HHHHHHHhhcc
Q 023384 197 ILKKRRAAIAS 207 (283)
Q Consensus 197 iL~~~~~~L~p 207 (283)
+++++...+++
T Consensus 74 vl~~l~~~l~~ 84 (437)
T PRK08655 74 VIKEVAPHVKE 84 (437)
T ss_pred HHHHHHhhCCC
Confidence 88888888887
No 439
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=38.99 E-value=36 Score=26.82 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=28.3
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
..-=+-||||.=....+.++|+++...+--+.....+++
T Consensus 59 d~GIliCGTGiG~siaANK~~GIRAA~~~d~~~A~~ar~ 97 (171)
T PRK12615 59 DLGVCICGTGVGINNAVNKVPGIRSALVRDMTTALYAKE 97 (171)
T ss_pred CEEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 344456999998888999999999766654555555544
No 440
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=38.98 E-value=38 Score=29.18 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=39.9
Q ss_pred EEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCC---CCceEEEecccccCCChhHHH
Q 023384 122 LVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFI---PPADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 122 vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~---p~~D~v~~~~vlh~~~d~~~~ 195 (283)
|-=||+| ..+..+++.+ .+.++++.|. ++..+.+.+. .+.. ..+..+-. ...|+|+++-. +++...
T Consensus 3 Ig~IGlG--~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~-g~~~-~~s~~~~~~~~~~advVi~~vp----~~~~~~ 74 (299)
T PRK12490 3 LGLIGLG--KMGGNMAERLREDGHEVVGYDVNQEAVDVAGKL-GITA-RHSLEELVSKLEAPRTIWVMVP----AGEVTE 74 (299)
T ss_pred EEEEccc--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHC-CCee-cCCHHHHHHhCCCCCEEEEEec----CchHHH
Confidence 4445544 4444444432 3567888998 5555544321 1211 11211111 12578766432 233667
Q ss_pred HHHHHHHHhhcc
Q 023384 196 KILKKRRAAIAS 207 (283)
Q Consensus 196 ~iL~~~~~~L~p 207 (283)
.++..+...+++
T Consensus 75 ~v~~~i~~~l~~ 86 (299)
T PRK12490 75 SVIKDLYPLLSP 86 (299)
T ss_pred HHHHHHhccCCC
Confidence 788888888887
No 441
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=38.88 E-value=2.8e+02 Score=26.59 Aligned_cols=102 Identities=10% Similarity=0.066 Sum_probs=54.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcC----C----------CCCCeEEEEcCCCC-C-----
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANL----P----------EADNLKYIAGDMFQ-F----- 173 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a----~----------~~~rv~~~~~d~~~-~----- 173 (283)
...+.||-.| |+|..+..+++++ .+.+++++++ .+..... . ...++.++.+|+.+ .
T Consensus 78 ~~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 78 KDEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 3445666665 4566666665544 3567777776 3322211 0 02468899999987 2
Q ss_pred CCCceEEEecccccC-----CChhH--HHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 174 IPPADAFLFKLVFHG-----LGDED--GLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 174 ~p~~D~v~~~~vlh~-----~~d~~--~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
+.+.|+++.+..... |.... ......++.++++..+ .++++++-..
T Consensus 157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~ag-VgRIV~VSSi 209 (576)
T PLN03209 157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAK-VNHFILVTSL 209 (576)
T ss_pred hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhC-CCEEEEEccc
Confidence 235788776542221 11100 1122455666665522 3677776654
No 442
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=38.28 E-value=38 Score=26.07 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=28.1
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
...-=+.||||.=....+.++|+++.-.+--+.....+++
T Consensus 59 ~d~GIliCGTGiG~~iaANKv~GiraAl~~D~~sA~~ar~ 98 (151)
T COG0698 59 ADLGILICGTGIGMSIAANKVPGIRAALVSDPTSAKLARE 98 (151)
T ss_pred CCeeEEEecCChhHHHHhhccCCeEEEEecCHHHHHHHHh
Confidence 4455678999999999999999998755443444444443
No 443
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=38.18 E-value=1.1e+02 Score=28.02 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=57.4
Q ss_pred CCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hH-HHhcCCCCCCeEEEEcCCCC-CCCCceEEEecc--cccCCCh
Q 023384 118 GLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PH-VVANLPEADNLKYIAGDMFQ-FIPPADAFLFKL--VFHGLGD 191 (283)
Q Consensus 118 ~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~-~~~~a~~~~rv~~~~~d~~~-~~p~~D~v~~~~--vlh~~~d 191 (283)
..+++|=||.| .|.+...-+....--++++... .+ +.+.+++- +..+...+=.. -+..+|+|+++- .....+.
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~-~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~ 255 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKL-GAEAVALEELLEALAEADVVISSTSAPHPIITR 255 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHh-CCeeecHHHHHHhhhhCCEEEEecCCCccccCH
Confidence 45789999999 7777666555544456777776 33 33333331 13333322222 245699999874 2222333
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccc
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEE 227 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~ 227 (283)
+ .+.+++++. -+++++|...|.+-.+
T Consensus 256 ~-------~ve~a~~~r---~~~livDiavPRdie~ 281 (414)
T COG0373 256 E-------MVERALKIR---KRLLIVDIAVPRDVEP 281 (414)
T ss_pred H-------HHHHHHhcc---cCeEEEEecCCCCCCc
Confidence 3 455566652 2389999998876543
No 444
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=38.11 E-value=98 Score=26.33 Aligned_cols=81 Identities=11% Similarity=0.102 Sum_probs=41.3
Q ss_pred eEEEEcCCc--cHHHHHHHHHC--CCCeEEEeec-h-HHHhcCCC-CCCeEEEEcCCCCCCCCceEEEecccccCCChhH
Q 023384 121 SLVDVGGGN--GSLSRIISEAF--PGIKCTVLDL-P-HVVANLPE-ADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDED 193 (283)
Q Consensus 121 ~vlDvGgG~--G~~~~~l~~~~--p~~~~~~~D~-~-~~~~~a~~-~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~ 193 (283)
+|.=||||. +.++..+.+.. +..++++.+. + +..+.... ...+. ...|..+-...+|+|++.- ++..
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~-~~~~~~e~~~~aDvVilav-----pp~~ 76 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVE-LADNEAEIFTKCDHSFICV-----PPLA 76 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeE-EeCCHHHHHhhCCEEEEec-----CHHH
Confidence 466677664 23334444432 1245677765 2 22222211 11122 1222222123589888643 5566
Q ss_pred HHHHHHHHHHhhcc
Q 023384 194 GLKILKKRRAAIAS 207 (283)
Q Consensus 194 ~~~iL~~~~~~L~p 207 (283)
...+++++...+++
T Consensus 77 ~~~vl~~l~~~l~~ 90 (277)
T PRK06928 77 VLPLLKDCAPVLTP 90 (277)
T ss_pred HHHHHHHHHhhcCC
Confidence 77888888888886
No 445
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=38.02 E-value=1.3e+02 Score=25.49 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=50.8
Q ss_pred EEEEcCCccHHHHHHHHHCC--CCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCC-----Cc-eEEEecccccCCCh
Q 023384 122 LVDVGGGNGSLSRIISEAFP--GIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIP-----PA-DAFLFKLVFHGLGD 191 (283)
Q Consensus 122 vlDvGgG~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p-----~~-D~v~~~~vlh~~~d 191 (283)
||=.|| +|..+..+++++- +.+++++|. +....... .++.++.+|..+ ... .. |+|+.....+....
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~~~~~ 79 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL--SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQSSVPD 79 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHhCCCeEEEEeCCCccccccc--cccceeeecccchHHHHHHHhcCCCEEEEccccCchhh
Confidence 666665 9999999888875 568899987 33222221 567788888776 221 13 77877666654222
Q ss_pred h----------HHHHHHHHHHHhhcc
Q 023384 192 E----------DGLKILKKRRAAIAS 207 (283)
Q Consensus 192 ~----------~~~~iL~~~~~~L~p 207 (283)
. ..+...+++.++++.
T Consensus 80 ~~~~~~~~~~~~nv~gt~~ll~aa~~ 105 (314)
T COG0451 80 SNASDPAEFLDVNVDGTLNLLEAARA 105 (314)
T ss_pred hhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 234445566666654
No 446
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=37.98 E-value=39 Score=31.15 Aligned_cols=32 Identities=28% Similarity=0.528 Sum_probs=25.7
Q ss_pred CeEEEEcCC-ccHHHH-HHHHHCCCCeEEEeech
Q 023384 120 GSLVDVGGG-NGSLSR-IISEAFPGIKCTVLDLP 151 (283)
Q Consensus 120 ~~vlDvGgG-~G~~~~-~l~~~~p~~~~~~~D~~ 151 (283)
..|+-||+| +|..+. .|+++.|+.+++++|..
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~ 58 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD 58 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 469999999 777766 56777789999999964
No 447
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=37.72 E-value=1.5e+02 Score=25.25 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=45.4
Q ss_pred eEEEEcCCccHH--HHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcC------CCC---CCCCceEEEecccccC
Q 023384 121 SLVDVGGGNGSL--SRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGD------MFQ---FIPPADAFLFKLVFHG 188 (283)
Q Consensus 121 ~vlDvGgG~G~~--~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d------~~~---~~p~~D~v~~~~vlh~ 188 (283)
+|+=||+|.-.. +..|++. +.++++++. ++.++..++. .+.+..++ ..+ +...+|++++.--
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k--- 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPAELGPQDLVILAVK--- 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHc-CCcccCCceeecccCCCChhHcCCCCEEEEecc---
Confidence 577788764322 2223332 457888887 5555443321 11110111 111 1235898887543
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
..+...+++.+...+.+ +..++.+..
T Consensus 76 --~~~~~~~~~~l~~~l~~---~~~iv~~~n 101 (304)
T PRK06522 76 --AYQLPAALPSLAPLLGP---DTPVLFLQN 101 (304)
T ss_pred --cccHHHHHHHHhhhcCC---CCEEEEecC
Confidence 22345678888888877 455555443
No 448
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=37.62 E-value=2.1e+02 Score=26.38 Aligned_cols=102 Identities=11% Similarity=0.030 Sum_probs=55.1
Q ss_pred cCCCCeEEEEcC-Cc-cHHHHHHHHHC---C---C--CeEEEeec-hHHHh-------cCC-C-CCCeEEEEcCCCCCCC
Q 023384 116 FEGLGSLVDVGG-GN-GSLSRIISEAF---P---G--IKCTVLDL-PHVVA-------NLP-E-ADNLKYIAGDMFQFIP 175 (283)
Q Consensus 116 ~~~~~~vlDvGg-G~-G~~~~~l~~~~---p---~--~~~~~~D~-~~~~~-------~a~-~-~~rv~~~~~d~~~~~p 175 (283)
++...+|.=||+ |. |......+..- - + .+.+.+|. .+.++ .+. . ..++.+..+| .+++.
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~-ye~~k 175 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDP-YEVFQ 175 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCC-HHHhC
Confidence 556688999998 76 33333222221 0 2 26778886 22221 111 0 1244444443 33566
Q ss_pred CceEEEecccccCCCh-------hHHHHHHHHHHHhhcc-CCCCcEEEEEe
Q 023384 176 PADAFLFKLVFHGLGD-------EDGLKILKKRRAAIAS-NGERGKVIIID 218 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d-------~~~~~iL~~~~~~L~p-~~~gg~lli~d 218 (283)
++|+|++..-.-.-+. +...+|++++.+.++. .++.++++++.
T Consensus 176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 7899988665422221 2346777887777754 23368888776
No 449
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=37.55 E-value=38 Score=26.70 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=27.6
Q ss_pred EEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 122 LVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 122 vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
.-=+-||||.=....+.++|+++...+--+.....+++
T Consensus 60 ~GIliCGTGiG~siaANKv~GIRAAl~~d~~sA~~ar~ 97 (171)
T TIGR01119 60 LGVCICGTGVGINNAVNKVPGVRSALVRDMTSALYAKE 97 (171)
T ss_pred EEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 34456999998888999999999766654555555544
No 450
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=37.50 E-value=1.9e+02 Score=28.24 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=27.2
Q ss_pred cCCccCCHHHHHHHHHHCCCCeeeEEEcCCcc
Q 023384 245 ATGKERTESEWAKLFFDACFSHYKITPIFGMR 276 (283)
Q Consensus 245 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 276 (283)
.-|.+.+.+++.+.|.+.||+.+..+..+|..
T Consensus 162 ~~G~~i~~~~l~~~L~~~GY~r~~~v~~~GeF 193 (652)
T PRK05298 162 RVGQEIDRRELLRRLVDLQYERNDIDFQRGTF 193 (652)
T ss_pred eCCCCcCHHHHHHHHHHcCCcccCccCCCceE
Confidence 45888999999999999999998887776643
No 451
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=37.42 E-value=2.9e+02 Score=24.41 Aligned_cols=94 Identities=7% Similarity=0.053 Sum_probs=54.4
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-CCCeEEEEcCCCCCCC-CceEEEecccccCCChhHHHHH
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-ADNLKYIAGDMFQFIP-PADAFLFKLVFHGLGDEDGLKI 197 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~rv~~~~~d~~~~~p-~~D~v~~~~vlh~~~d~~~~~i 197 (283)
++||=+|.-...+...+.. ...++...+........+. ..++.|- .++..+.+ .+|.+++...= +.+++.-.
T Consensus 21 ~~~l~~~~~~d~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~d~~~~~~pk---~k~~~~~~ 94 (342)
T PRK09489 21 RRVLFAGDLQDDLPAQLDA--ASVRVHTQQFHHWQVLSRQMGDNARFS-LVATAEDVADCDTLIYYWPK---NKQEAQFQ 94 (342)
T ss_pred CcEEEEcCcchhhHHhhhc--cceEEehhhhHHHHHHHhhcCCceEec-cccCCccCCCCCEEEEECCC---CHHHHHHH
Confidence 5788888777777776641 2333333333222221111 2334332 33333333 59988874421 23567788
Q ss_pred HHHHHHhhccCCCCcEEEEEeeecC
Q 023384 198 LKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 198 L~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
|.++.+.|+| ||.|+++.....
T Consensus 95 l~~~~~~l~~---g~~i~~~G~~~~ 116 (342)
T PRK09489 95 LMNLLSLLPV---GTDIFVVGENRS 116 (342)
T ss_pred HHHHHHhCCC---CCEEEEEEeccc
Confidence 9999999999 788888875443
No 452
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=37.36 E-value=1.4e+02 Score=26.89 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=57.1
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec--hHH--HhcCCC----CCCeEEEEcCCCCCCC-CceEEEecccccCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL--PHV--VANLPE----ADNLKYIAGDMFQFIP-PADAFLFKLVFHGLG 190 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~--~~~--~~~a~~----~~rv~~~~~d~~~~~p-~~D~v~~~~vlh~~~ 190 (283)
.+||-|+=.-|.++..++...|. ...|. .+. ..+++. .+.+++. +..+++| .+|+|++...= +
T Consensus 46 ~~~~i~nd~fGal~~~l~~~~~~---~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~~~~~d~vl~~~PK---~ 117 (378)
T PRK15001 46 GPVLILNDAFGALSCALAEHKPY---SIGDSYISELATRENLRLNGIDESSVKFL--DSTADYPQQPGVVLIKVPK---T 117 (378)
T ss_pred CCEEEEcCchhHHHHHHHhCCCC---eeehHHHHHHHHHHHHHHcCCCcccceee--cccccccCCCCEEEEEeCC---C
Confidence 38999999999999999976553 34664 111 112211 2234333 3444555 48998885422 2
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
-......|..+.+.++| |+.+++.+..
T Consensus 118 ~~~l~~~l~~l~~~l~~---~~~ii~g~~~ 144 (378)
T PRK15001 118 LALLEQQLRALRKVVTS---DTRIIAGAKA 144 (378)
T ss_pred HHHHHHHHHHHHhhCCC---CCEEEEEEec
Confidence 34567789999999999 6887665543
No 453
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=37.36 E-value=2e+02 Score=22.36 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=41.5
Q ss_pred CCCCeEEEEcCCccHHH-HHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHH
Q 023384 117 EGLGSLVDVGGGNGSLS-RIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDG 194 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~-~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~ 194 (283)
....+|+=.|+|+...+ ...+..-++.-..++|. |.-.-.--.+..+.++.-+.+... ..|++++..-.| .
T Consensus 66 ~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p~~l~~~-~pd~vivlaw~y------~ 138 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSPEELKER-KPDYVIVLAWNY------K 138 (160)
T ss_dssp HTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEGGG--SS---SEEEES-GGG------H
T ss_pred HcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCHHHHhhC-CCCEEEEcChhh------H
Confidence 34588999998876654 44444434543456665 332222222556777776655422 236555533222 3
Q ss_pred HHHHHHHHHhhccCCCCcEEEE
Q 023384 195 LKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 195 ~~iL~~~~~~L~p~~~gg~lli 216 (283)
..|++++.+.++. ||++++
T Consensus 139 ~EI~~~~~~~~~~---gg~fi~ 157 (160)
T PF08484_consen 139 DEIIEKLREYLER---GGKFIV 157 (160)
T ss_dssp HHHHHHTHHHHHT---T-EEEE
T ss_pred HHHHHHHHHHHhc---CCEEEE
Confidence 4778888888887 788876
No 454
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=36.76 E-value=71 Score=27.46 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=70.7
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCCCCCeEEEEcCCCC-C---CC-CceEEEecccccCCC---
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIK-CTVLDL-PHVVANLPEADNLKYIAGDMFQ-F---IP-PADAFLFKLVFHGLG--- 190 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~---~p-~~D~v~~~~vlh~~~--- 190 (283)
+++|+=||.|.++..+.++. .+ +..+|+ +...+.-+..-. ....+|+.+ . +| +.|+++..-....|+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~fS~ag 78 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP-EVICGDITEIDPSDLPKDVDLLIGGPPCQGFSIAG 78 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHHT-SEEEEE---TTTSTTS
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc-ccccccccccccccccccceEEEeccCCceEeccc
Confidence 68999999999999999885 44 457787 555444333111 778888887 3 56 499998876655554
Q ss_pred ------hhH--HHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHC
Q 023384 191 ------DED--GLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDA 262 (283)
Q Consensus 191 ------d~~--~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 262 (283)
|+. ...-+-++.+.++| +++++|.+..=... ......+.+.+.|++.
T Consensus 79 ~~~~~~d~r~~L~~~~~~~v~~~~P-----k~~~~ENV~~l~~~--------------------~~~~~~~~i~~~l~~l 133 (335)
T PF00145_consen 79 KRKGFDDPRNSLFFEFLRIVKELKP-----KYFLLENVPGLLSS--------------------KNGEVFKEILEELEEL 133 (335)
T ss_dssp THHCCCCHTTSHHHHHHHHHHHHS------SEEEEEEEGGGGTG--------------------GGHHHHHHHHHHHHHT
T ss_pred cccccccccchhhHHHHHHHhhccc-----eEEEecccceeecc--------------------cccccccccccccccc
Confidence 221 12223334455677 67888876531111 0012457788889999
Q ss_pred CCCee
Q 023384 263 CFSHY 267 (283)
Q Consensus 263 Gf~~~ 267 (283)
|+.+.
T Consensus 134 GY~v~ 138 (335)
T PF00145_consen 134 GYNVQ 138 (335)
T ss_dssp TEEEE
T ss_pred ceeeh
Confidence 98764
No 455
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=36.66 E-value=37 Score=25.38 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=38.2
Q ss_pred CCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCC-C--CCCeEEEEcCCCC-CCCCceEEEeccccc
Q 023384 118 GLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLP-E--ADNLKYIAGDMFQ-FIPPADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~--~~rv~~~~~d~~~-~~p~~D~v~~~~vlh 187 (283)
..+++|=||.| .|.....-+....--+++++.+ .+-.+... . ...+++...+-.. -.+++|+++..-..-
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG 86 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC
Confidence 35899999864 3333333333433334888887 44333222 1 3456666654333 244699999876543
No 456
>PLN02602 lactate dehydrogenase
Probab=36.58 E-value=2.3e+02 Score=25.25 Aligned_cols=98 Identities=13% Similarity=0.085 Sum_probs=51.4
Q ss_pred CeEEEEcCCc-cHHHHHHHHHCCC-CeEEEeechH-HHh-------cCCC-CCCeEEEE-cCCCCCCCCceEEEeccccc
Q 023384 120 GSLVDVGGGN-GSLSRIISEAFPG-IKCTVLDLPH-VVA-------NLPE-ADNLKYIA-GDMFQFIPPADAFLFKLVFH 187 (283)
Q Consensus 120 ~~vlDvGgG~-G~~~~~l~~~~p~-~~~~~~D~~~-~~~-------~a~~-~~rv~~~~-~d~~~~~p~~D~v~~~~vlh 187 (283)
.+|.=||+|. |......+...+- -+.+++|+.+ ... .+.. ...+.+.. +|+. ++.++|+|++..-.-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~-~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA-VTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH-HhCCCCEEEECCCCC
Confidence 5899999876 4444433333333 2588999733 211 1111 22345544 3432 355789998865432
Q ss_pred C---CChh----HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 188 G---LGDE----DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 188 ~---~~d~----~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
. .++. ...++++.+.+.++...|.+.++++.
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1 1221 23566677776665322257776665
No 457
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=36.49 E-value=26 Score=27.94 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=37.5
Q ss_pred eEEEEcCCccHHHHHHH---HHCCC---CeEEEeec-hHHHhcCCC---------CCCeEEEEc-CCCCCCCCceEEEec
Q 023384 121 SLVDVGGGNGSLSRIIS---EAFPG---IKCTVLDL-PHVVANLPE---------ADNLKYIAG-DMFQFIPPADAFLFK 183 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~---~~~p~---~~~~~~D~-~~~~~~a~~---------~~rv~~~~~-d~~~~~p~~D~v~~~ 183 (283)
+|.=||+|+-.+...+. ...+. .+++..|+ ++-++.... ...+++... |..+.+.++|.|+..
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 46679999988876554 33344 46789998 655543321 445665443 333356678888774
No 458
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=36.41 E-value=80 Score=25.03 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=32.1
Q ss_pred HHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEE
Q 023384 200 KRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 200 ~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 271 (283)
-...++++ |-+++|+|-++.... |.....++++++|++++.+..
T Consensus 108 ~~~~~l~~---G~rVlIVDDllaTGg-------------------------T~~a~~~Ll~~~ga~vvg~~~ 151 (179)
T COG0503 108 LHKDALKP---GDRVLIVDDLLATGG-------------------------TALALIELLEQAGAEVVGAAF 151 (179)
T ss_pred EEhhhCCC---CCEEEEEecchhcCh-------------------------HHHHHHHHHHHCCCEEEEEEE
Confidence 34456777 799999997775432 456678899999998877643
No 459
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=36.11 E-value=1.8e+02 Score=28.64 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=78.0
Q ss_pred CeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEEcCCCCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVVANLPE-----------------------ADNLKYIAGDMFQFI 174 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------------~~rv~~~~~d~~~~~ 174 (283)
.+|.=||+|+=...++..-+ ..+..+++.|. ++.++.+.. ..|+++. .|+ +..
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~~~ 382 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDY-RGF 382 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CCh-HHh
Confidence 57889988765555554433 35789999998 665544321 2355443 232 234
Q ss_pred CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe-eecCCCccchhhhhhhhhccccc--------ccc-
Q 023384 175 PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID-IVINAEEEEHELTETKFLFDIVM--------SVN- 244 (283)
Q Consensus 175 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d-~~~~~~~~~~~~~~~~~~~~~~~--------~~~- 244 (283)
.++|+|+=. +.-++ +-..++++++-+.++| ..++... ..++-..-............+.. ++-
T Consensus 383 ~~adlViEa-v~E~l--~~K~~v~~~l~~~~~~----~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEv 455 (699)
T TIGR02440 383 KDVDIVIEA-VFEDL--ALKHQMVKDIEQECAA----HTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEV 455 (699)
T ss_pred ccCCEEEEe-ccccH--HHHHHHHHHHHhhCCC----CcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEE
Confidence 468887764 34333 3346889999999998 3444332 22221100000000000111110 000
Q ss_pred cC---CccCCHHHHHHHHHHCCCCeeeEEEcCCc
Q 023384 245 AT---GKERTESEWAKLFFDACFSHYKITPIFGM 275 (283)
Q Consensus 245 ~~---~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 275 (283)
.. ....+.+...+++++.|.+.+.+...+|+
T Consensus 456 v~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pGf 489 (699)
T TIGR02440 456 IPHAGTSEQTIATTVALAKKQGKTPIVVADKAGF 489 (699)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEEccccch
Confidence 11 12235566788899999998888776765
No 460
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=35.70 E-value=2.9e+02 Score=23.83 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=51.5
Q ss_pred CeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEE-cC-------CCC--CCCCceEEEeccccc
Q 023384 120 GSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIA-GD-------MFQ--FIPPADAFLFKLVFH 187 (283)
Q Consensus 120 ~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~-~d-------~~~--~~p~~D~v~~~~vlh 187 (283)
.+|+=||+| -|.+....+.+. +..++.++. ++.++..++...+.... ++ ..+ +.+.+|++++.-=-+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 478889966 455444444332 457888888 45555443211122211 11 111 123489887754322
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
+...+++.+...+.+ +..++.+..-+.
T Consensus 82 -----~~~~al~~l~~~l~~---~t~vv~lQNGv~ 108 (305)
T PRK05708 82 -----DAEPAVASLAHRLAP---GAELLLLQNGLG 108 (305)
T ss_pred -----hHHHHHHHHHhhCCC---CCEEEEEeCCCC
Confidence 234668888888988 576666654443
No 461
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=35.68 E-value=2.9e+02 Score=23.78 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHHCCCC-eEEEeec-hHHHhcCCCCCCeEEEEc---CCCC--CC-CCceEEEecccccC
Q 023384 118 GLGSLVDVGGGN-GSLSRIISEAFPGI-KCTVLDL-PHVVANLPEADNLKYIAG---DMFQ--FI-PPADAFLFKLVFHG 188 (283)
Q Consensus 118 ~~~~vlDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~rv~~~~~---d~~~--~~-p~~D~v~~~~vlh~ 188 (283)
...+||-.|+|. |..+..++++. +. ++++.+. ++..+.+++...-.++.. +... .. ..+|+++-....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~-- 241 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA-- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC--
Confidence 557888888765 66777777775 44 6777776 444333222110111111 1111 11 137887764321
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
. ..++.+.+.|++ +|+++.+.
T Consensus 242 --~----~~~~~~~~~L~~---~G~~v~~g 262 (339)
T cd08232 242 --P----AALASALRVVRP---GGTVVQVG 262 (339)
T ss_pred --H----HHHHHHHHHHhc---CCEEEEEe
Confidence 1 346778889998 78888764
No 462
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=35.67 E-value=1.5e+02 Score=27.16 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHH
Q 023384 118 GLGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 118 ~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~ 195 (283)
...+|+=+|+|. |......++.+ +.++++.|. |...+.+... ..... +..+....+|+++...- . .
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~-G~~~~--~~~e~v~~aDVVI~atG-----~---~ 268 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME-GYEVM--TMEEAVKEGDIFVTTTG-----N---K 268 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc-CCEEc--cHHHHHcCCCEEEECCC-----C---H
Confidence 457999999885 44444555554 568999998 5555555431 12221 11122345899886431 1 2
Q ss_pred HHHHH-HHHhhccCCCCcEEEEEe
Q 023384 196 KILKK-RRAAIASNGERGKVIIID 218 (283)
Q Consensus 196 ~iL~~-~~~~L~p~~~gg~lli~d 218 (283)
.++.. ..+.|++ ||.++.+-
T Consensus 269 ~~i~~~~l~~mk~---GgilvnvG 289 (413)
T cd00401 269 DIITGEHFEQMKD---GAIVCNIG 289 (413)
T ss_pred HHHHHHHHhcCCC---CcEEEEeC
Confidence 34554 4788998 67776655
No 463
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=35.65 E-value=2.1e+02 Score=24.97 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=49.7
Q ss_pred EEEEcC-Cc-cHHHHHHHHHCCC-CeEEEeechHHHhcCCC----CCCeEEEE--cC--CCCCCCCceEEEecccccCC-
Q 023384 122 LVDVGG-GN-GSLSRIISEAFPG-IKCTVLDLPHVVANLPE----ADNLKYIA--GD--MFQFIPPADAFLFKLVFHGL- 189 (283)
Q Consensus 122 vlDvGg-G~-G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~----~~rv~~~~--~d--~~~~~p~~D~v~~~~vlh~~- 189 (283)
|.=||+ |. |......+...+- .+.+++|+.+....+.. ..++.+.. ++ ..+.+.++|+|++..-.-.-
T Consensus 2 V~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~~ 81 (312)
T TIGR01772 2 VAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRKP 81 (312)
T ss_pred EEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCCC
Confidence 555776 54 4443333333333 36889998552211111 22234442 22 23456678988875543221
Q ss_pred --Ch----hHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 190 --GD----EDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 190 --~d----~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+. +...++++.+.+.++...|.+.++++..
T Consensus 82 g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 82 GMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred CccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 22 1345677777766653223577776653
No 464
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=35.48 E-value=40 Score=22.69 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=18.7
Q ss_pred cCCCCeEEEEcCCccHH-HHHHHHHC-CCCeEEEe
Q 023384 116 FEGLGSLVDVGGGNGSL-SRIISEAF-PGIKCTVL 148 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~-~~~l~~~~-p~~~~~~~ 148 (283)
.++.++||-|||.+|.= +..++.+| -+...+++
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV 70 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGV 70 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEE
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEE
Confidence 46678999999999973 44466664 33444433
No 465
>PRK07574 formate dehydrogenase; Provisional
Probab=35.47 E-value=1e+02 Score=27.80 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=41.5
Q ss_pred CeEEEEcCCc-cHHHHHHHHHCCCCeEEEeechH-HHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHH
Q 023384 120 GSLVDVGGGN-GSLSRIISEAFPGIKCTVLDLPH-VVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKI 197 (283)
Q Consensus 120 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~i 197 (283)
++|.=||.|. |......++.+ +.++++.|... ..+..+ ...+... .++.+-+...|+|++.-.+. ++...+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f-G~~V~~~dr~~~~~~~~~-~~g~~~~-~~l~ell~~aDvV~l~lPlt----~~T~~l 265 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF-DVKLHYTDRHRLPEEVEQ-ELGLTYH-VSFDSLVSVCDVVTIHCPLH----PETEHL 265 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEECCCCCchhhHh-hcCceec-CCHHHHhhcCCEEEEcCCCC----HHHHHH
Confidence 5777787663 54444444444 67888999732 111111 1122211 12222245689998866553 223344
Q ss_pred H-HHHHHhhcc
Q 023384 198 L-KKRRAAIAS 207 (283)
Q Consensus 198 L-~~~~~~L~p 207 (283)
+ ++..+.||+
T Consensus 266 i~~~~l~~mk~ 276 (385)
T PRK07574 266 FDADVLSRMKR 276 (385)
T ss_pred hCHHHHhcCCC
Confidence 3 346666777
No 466
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=35.43 E-value=1.8e+02 Score=25.52 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=29.5
Q ss_pred CCCCCceEEEecccccCCChh-------HHHHHHHHHHHhhccC-CCCcEEEEEe
Q 023384 172 QFIPPADAFLFKLVFHGLGDE-------DGLKILKKRRAAIASN-GERGKVIIID 218 (283)
Q Consensus 172 ~~~p~~D~v~~~~vlh~~~d~-------~~~~iL~~~~~~L~p~-~~gg~lli~d 218 (283)
+.+.+.|+|+...-...-+.+ ...++++++.+.+++. +|.+.++++.
T Consensus 72 ~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 72 EAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred HHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 345578998887666544432 2567778777777542 1357777764
No 467
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.31 E-value=2e+02 Score=24.34 Aligned_cols=88 Identities=13% Similarity=0.169 Sum_probs=49.7
Q ss_pred CeEEEEcCCc--cHHHHHHHHHCCCCeEEEeec-hHHHhcCC-----------CC------------CCeEEEEcCCCCC
Q 023384 120 GSLVDVGGGN--GSLSRIISEAFPGIKCTVLDL-PHVVANLP-----------EA------------DNLKYIAGDMFQF 173 (283)
Q Consensus 120 ~~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----------~~------------~rv~~~~~d~~~~ 173 (283)
.+|.=||+|. +.++..++++ +.+++++|. ++.++.+. +. .++++ ..|. +.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL-DD 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH-HH
Confidence 4677788874 3333344443 568899998 66553211 11 13432 2232 23
Q ss_pred CCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 174 IPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 174 ~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
..++|+|+.+-.= ..+....+++++.+.++| +.+++.+
T Consensus 80 ~~~aDlVi~av~e---~~~~k~~~~~~l~~~~~~----~~il~s~ 117 (282)
T PRK05808 80 LKDADLVIEAATE---NMDLKKKIFAQLDEIAKP----EAILATN 117 (282)
T ss_pred hccCCeeeecccc---cHHHHHHHHHHHHhhCCC----CcEEEEC
Confidence 4458998885321 112235889999999998 5555443
No 468
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=35.07 E-value=1.8e+02 Score=25.56 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=52.5
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEE---cCCCCC---C-C--CceEEEecc
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIA---GDMFQF---I-P--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~---~d~~~~---~-p--~~D~v~~~~ 184 (283)
.....+||=.|+| .|..+..++++.--.++++.|. ++..+.+++..--.++. .|..+. . + .+|+++-.-
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~ 253 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAV 253 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 4556788888764 4666777777764335888886 55555544311111111 111110 1 1 378776432
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
..+ ..++...+.+++ ||+++++-..
T Consensus 254 -----g~~---~~~~~~~~~~~~---~G~iv~~G~~ 278 (358)
T TIGR03451 254 -----GRP---ETYKQAFYARDL---AGTVVLVGVP 278 (358)
T ss_pred -----CCH---HHHHHHHHHhcc---CCEEEEECCC
Confidence 111 346667788998 7998887643
No 469
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=35.04 E-value=45 Score=25.74 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=27.1
Q ss_pred EEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 123 VDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 123 lDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
-=+-||||.=....+.++|+++...+--+.....+++
T Consensus 65 GIliCGtGiG~siaANK~~GIRAa~~~d~~~A~~ar~ 101 (151)
T PTZ00215 65 GILVCGSGIGISIAANKVKGIRCALCHDHYTARMSRQ 101 (151)
T ss_pred EEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 4456999998888999999999766654555544443
No 470
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=34.90 E-value=2.3e+02 Score=24.63 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=41.6
Q ss_pred CeEEEEcCCccH--HHHHHHHHCCCCeEEEeechHHHhcCCC-CCCe--------EE------EEcCCCCCCCCceEEEe
Q 023384 120 GSLVDVGGGNGS--LSRIISEAFPGIKCTVLDLPHVVANLPE-ADNL--------KY------IAGDMFQFIPPADAFLF 182 (283)
Q Consensus 120 ~~vlDvGgG~G~--~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~rv--------~~------~~~d~~~~~p~~D~v~~ 182 (283)
.+|.=||+|.=. ++..++++ +.+++++|.++..+..++ ...+ .. ...+. +....+|+|++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~--G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil 79 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA--GADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLV 79 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc--CCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEE
Confidence 367788877332 33333333 567888888543332221 1111 00 01111 22335898887
Q ss_pred cccccCCChhHHHHHHHHHHHhhcc
Q 023384 183 KLVFHGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 183 ~~vlh~~~d~~~~~iL~~~~~~L~p 207 (283)
.-- ..+...+++.+.+.+++
T Consensus 80 ~vk-----~~~~~~~~~~l~~~~~~ 99 (341)
T PRK08229 80 TVK-----SAATADAAAALAGHARP 99 (341)
T ss_pred Eec-----CcchHHHHHHHHhhCCC
Confidence 542 23345678888888887
No 471
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=34.75 E-value=2.6e+02 Score=23.11 Aligned_cols=90 Identities=16% Similarity=0.036 Sum_probs=49.7
Q ss_pred cCCCCeEEEEcCCc-cHHHHHHHHHCCCCe-EEEeec-hHHHhcCCCC---CCeEEEEcCCCCCCCCceEEEecccccCC
Q 023384 116 FEGLGSLVDVGGGN-GSLSRIISEAFPGIK-CTVLDL-PHVVANLPEA---DNLKYIAGDMFQFIPPADAFLFKLVFHGL 189 (283)
Q Consensus 116 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~~~p~~D~v~~~~vlh~~ 189 (283)
+....+||-.|+|. |..+..++++.. .+ +++.+. ++..+.+++. +.+. ...+...+-..+|+++-...
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~d~vl~~~~---- 168 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEALGPADPVA-ADTADEIGGRGADVVIEASG---- 168 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHHcCCCcccc-ccchhhhcCCCCCEEEEccC----
Confidence 45567788888654 666677777764 45 788776 5555443321 1110 00000001124787765321
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.. ..+....+.|++ +|+++.+.
T Consensus 169 ~~----~~~~~~~~~l~~---~g~~~~~g 190 (277)
T cd08255 169 SP----SALETALRLLRD---RGRVVLVG 190 (277)
T ss_pred Ch----HHHHHHHHHhcC---CcEEEEEe
Confidence 11 346777888998 68887664
No 472
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=34.67 E-value=97 Score=23.20 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=48.3
Q ss_pred EEEEcCC-ccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcC----------CCCC---CCCceEEEeccccc
Q 023384 122 LVDVGGG-NGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGD----------MFQF---IPPADAFLFKLVFH 187 (283)
Q Consensus 122 vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d----------~~~~---~p~~D~v~~~~vlh 187 (283)
|+=+|+| .|.+....+++ .+.+++.++.+...+..++ ..+.+...+ ...+ ...+|++++.-=
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK-- 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSPRLEAIKE-QGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK-- 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHHHHHHHHH-HCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS--
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccccHHhhhh-eeEEEEecccceecccccccCcchhccCCCcEEEEEec--
Confidence 3445654 44444444444 6788999998554333221 111111111 1111 224899888642
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
-.+...+++.+.+.+.| ...++++..-+
T Consensus 77 ---a~~~~~~l~~l~~~~~~---~t~iv~~qNG~ 104 (151)
T PF02558_consen 77 ---AYQLEQALQSLKPYLDP---NTTIVSLQNGM 104 (151)
T ss_dssp ---GGGHHHHHHHHCTGEET---TEEEEEESSSS
T ss_pred ---ccchHHHHHHHhhccCC---CcEEEEEeCCC
Confidence 22345678889899998 46777665443
No 473
>PRK05442 malate dehydrogenase; Provisional
Probab=34.63 E-value=3.2e+02 Score=24.01 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=50.6
Q ss_pred CCCeEEEEcC-Cc-cHHHHH-HHHH-----CCCCeEEEeechHHHhcCC----C--------CCCeEEEEcCCCCCCCCc
Q 023384 118 GLGSLVDVGG-GN-GSLSRI-ISEA-----FPGIKCTVLDLPHVVANLP----E--------ADNLKYIAGDMFQFIPPA 177 (283)
Q Consensus 118 ~~~~vlDvGg-G~-G~~~~~-l~~~-----~p~~~~~~~D~~~~~~~a~----~--------~~rv~~~~~d~~~~~p~~ 177 (283)
+..+|.=||+ |. |..... ++.. ....+.+++|+.+..+.++ . ..++.+.. +-.+++.++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~y~~~~da 81 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITD-DPNVAFKDA 81 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEec-ChHHHhCCC
Confidence 4468888886 54 333222 2221 1223788889844322111 1 12344443 323355678
Q ss_pred eEEEecccccCCC---h----hHHHHHHHHHHHhhccCC-CCcEEEEEe
Q 023384 178 DAFLFKLVFHGLG---D----EDGLKILKKRRAAIASNG-ERGKVIIID 218 (283)
Q Consensus 178 D~v~~~~vlh~~~---d----~~~~~iL~~~~~~L~p~~-~gg~lli~d 218 (283)
|+|++..-.-.-+ . ....++++++.+.++... +.+.++++.
T Consensus 82 DiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 82 DVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 9988765432222 2 234566777776664411 247777766
No 474
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=34.62 E-value=68 Score=26.82 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCccHHHHH-HHH-HCCCCeEEEeec-hHHHhcCCC--------CCCeEEEE----cCCCCC-CC---Cce
Q 023384 118 GLGSLVDVGGGNGSLSRI-ISE-AFPGIKCTVLDL-PHVVANLPE--------ADNLKYIA----GDMFQF-IP---PAD 178 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~-l~~-~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~----~d~~~~-~p---~~D 178 (283)
...++||||-| ..++. ++. +-=+.++|+.|+ +..+..|+. ...++... .-+|.. +. .||
T Consensus 78 ~~i~~LDIGvG--AnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 78 KNIRILDIGVG--ANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred CceEEEeeccC--cccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 45689999754 44432 110 111346788888 666665543 22233322 223332 22 399
Q ss_pred EEEecccccCCCh
Q 023384 179 AFLFKLVFHGLGD 191 (283)
Q Consensus 179 ~v~~~~vlh~~~d 191 (283)
+.++.-.+|...+
T Consensus 156 ~tlCNPPFh~s~~ 168 (292)
T COG3129 156 ATLCNPPFHDSAA 168 (292)
T ss_pred eEecCCCcchhHH
Confidence 9999999996544
No 475
>PRK12939 short chain dehydrogenase; Provisional
Probab=34.50 E-value=2.5e+02 Score=22.72 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=32.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcC----CC-CCCeEEEEcCCCC
Q 023384 119 LGSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANL----PE-ADNLKYIAGDMFQ 172 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a----~~-~~rv~~~~~d~~~ 172 (283)
.+++|=.| |+|..+..+++.+ .+.++++.+. ++..... +. ..++.+...|+.+
T Consensus 7 ~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 67 (250)
T PRK12939 7 GKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD 67 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC
Confidence 36677555 4666666666554 2467777776 4432221 11 3578889999987
No 476
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=34.30 E-value=44 Score=26.32 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=27.7
Q ss_pred EEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 122 LVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 122 vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
.-=+-||||.=....+.++|+++...+--+.....+++
T Consensus 60 ~GIliCGTGiG~siaANKv~GIRAA~~~d~~sA~~aR~ 97 (171)
T PRK08622 60 LGVCICGTGVGISNAVNKVPGIRSALVRDMTSALYAKE 97 (171)
T ss_pred EEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 34456999998888999999999766654555555544
No 477
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=34.29 E-value=79 Score=32.57 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=44.1
Q ss_pred CCeEEEEcCC-ccHHHHHHHHHCCCCe-------------EEEeec-hHHHhcCCC-CCCeEEEEcCCCC-C-C----CC
Q 023384 119 LGSLVDVGGG-NGSLSRIISEAFPGIK-------------CTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-F-I----PP 176 (283)
Q Consensus 119 ~~~vlDvGgG-~G~~~~~l~~~~p~~~-------------~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~-~----p~ 176 (283)
.++|+=||+| .|......+.+.|+.+ +++.|. ++..+.+.+ ..+++.+..|+.+ + . .+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~ 648 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ 648 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence 4689999998 4777777777778766 788887 544443322 3366677777665 1 1 35
Q ss_pred ceEEEecc
Q 023384 177 ADAFLFKL 184 (283)
Q Consensus 177 ~D~v~~~~ 184 (283)
.|+|+..-
T Consensus 649 ~DaVIsal 656 (1042)
T PLN02819 649 VDVVISLL 656 (1042)
T ss_pred CCEEEECC
Confidence 88887754
No 478
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=34.10 E-value=15 Score=24.57 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=19.8
Q ss_pred CccccccCeeEeeccCCCCceEecchhcchh
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLL 31 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~~l 31 (283)
|+.|...|+++.. ++.|.+|+.|+.+
T Consensus 40 L~~L~~~gLI~~~-----~~~Y~lTekG~~~ 65 (77)
T PF14947_consen 40 LKELEEKGLIKKK-----DGKYRLTEKGKEF 65 (77)
T ss_dssp HHHHHHTTSEEEE-----TTEEEE-HHHHHH
T ss_pred HHHHHHCcCeeCC-----CCEEEECccHHHH
Confidence 3567889999775 6999999999743
No 479
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=33.77 E-value=15 Score=25.42 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=21.5
Q ss_pred CccccccCeeEeeccCC--CCceEecchhcchhh
Q 023384 1 MRLLVHSGCFKKTKVNG--QEEAYGLTAASTLLI 32 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~--~~~~y~~t~~~~~l~ 32 (283)
|+.|...|++++..... ..-.|++|+.|+.|.
T Consensus 40 L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 40 LKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred HHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 46688899998764311 124699999998665
No 480
>PLN03139 formate dehydrogenase; Provisional
Probab=33.41 E-value=99 Score=27.92 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=40.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHC--CCCeEEEeechHH-HhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHH
Q 023384 119 LGSLVDVGGGNGSLSRIISEAF--PGIKCTVLDLPHV-VANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~~~~-~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~ 195 (283)
.++|.=||.| ..+..+++.. .+.++++.|.... .+... ...+.+. -++.+-++..|+|++.-.++ ++..
T Consensus 199 gktVGIVG~G--~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-~~g~~~~-~~l~ell~~sDvV~l~lPlt----~~T~ 270 (386)
T PLN03139 199 GKTVGTVGAG--RIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-ETGAKFE-EDLDAMLPKCDVVVINTPLT----EKTR 270 (386)
T ss_pred CCEEEEEeec--HHHHHHHHHHHHCCCEEEEECCCCcchhhHh-hcCceec-CCHHHHHhhCCEEEEeCCCC----HHHH
Confidence 3577778754 4444444432 4678888886321 11111 1122221 12222245689988865543 2233
Q ss_pred HHH-HHHHHhhcc
Q 023384 196 KIL-KKRRAAIAS 207 (283)
Q Consensus 196 ~iL-~~~~~~L~p 207 (283)
.++ ++..+.|||
T Consensus 271 ~li~~~~l~~mk~ 283 (386)
T PLN03139 271 GMFNKERIAKMKK 283 (386)
T ss_pred HHhCHHHHhhCCC
Confidence 333 456677777
No 481
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=33.10 E-value=1.3e+02 Score=26.35 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=49.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------------CCCeEEEEcCCCCCCCCce
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------------------ADNLKYIAGDMFQFIPPAD 178 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------------~~rv~~~~~d~~~~~p~~D 178 (283)
.++|-=||+|+=...++..-..-+.++++.|. ++.++.+.. ..|+++.. |+.+...++|
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~av~~aD 85 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEACVADAD 85 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHHhcCCC
Confidence 46788898885444443333345899999998 665443211 13333332 2222234578
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhhcc
Q 023384 179 AFLFKLVFHGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 179 ~v~~~~vlh~~~d~~~~~iL~~~~~~L~p 207 (283)
+|+-+ +.-+. +-...+++++-+.++|
T Consensus 86 lViEa-vpE~l--~vK~~lf~~l~~~~~~ 111 (321)
T PRK07066 86 FIQES-APERE--ALKLELHERISRAAKP 111 (321)
T ss_pred EEEEC-CcCCH--HHHHHHHHHHHHhCCC
Confidence 87774 22222 2245788999999998
No 482
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=32.78 E-value=3.4e+02 Score=23.71 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=52.3
Q ss_pred CCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec----hHHHhcCCCCCCeEEEE---cCCCC--CCCCceEEEeccccc
Q 023384 118 GLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL----PHVVANLPEADNLKYIA---GDMFQ--FIPPADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~----~~~~~~a~~~~rv~~~~---~d~~~--~~p~~D~v~~~~vlh 187 (283)
...+||=+|+| .|.++..+++.. +.++++++. ++-.+.+++. ...++. .|..+ ....+|+++-..-
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~-Ga~~v~~~~~~~~~~~~~~~~d~vid~~g-- 247 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL-GATYVNSSKTPVAEVKLVGEFDLIIEATG-- 247 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc-CCEEecCCccchhhhhhcCCCCEEEECcC--
Confidence 45688888865 466777777775 458888874 4444444431 111111 11110 1124787766432
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.+ ..+....++|++ ||+++++....
T Consensus 248 ---~~---~~~~~~~~~l~~---~G~~v~~G~~~ 272 (355)
T cd08230 248 ---VP---PLAFEALPALAP---NGVVILFGVPG 272 (355)
T ss_pred ---CH---HHHHHHHHHccC---CcEEEEEecCC
Confidence 11 357778889999 79988776543
No 483
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.58 E-value=2e+02 Score=24.68 Aligned_cols=91 Identities=9% Similarity=0.123 Sum_probs=48.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------C--------CCeEEEEcCCCCCCCCceE
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------A--------DNLKYIAGDMFQFIPPADA 179 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~--------~rv~~~~~d~~~~~p~~D~ 179 (283)
..+|.=||+|.=..+++..-...+.+++++|. ++.++.+++ . .++++ ..|..+...++|+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~aDl 82 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAVSGADL 82 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHhccCCE
Confidence 35788888875443333332334678999997 555443321 0 11222 1222112345899
Q ss_pred EEecccccCCChh-HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 180 FLFKLVFHGLGDE-DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 180 v~~~~vlh~~~d~-~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
|+.+-. ++. ....+++.+.+.+++ +.+++..
T Consensus 83 Vi~av~----~~~~~~~~v~~~l~~~~~~----~~ii~s~ 114 (311)
T PRK06130 83 VIEAVP----EKLELKRDVFARLDGLCDP----DTIFATN 114 (311)
T ss_pred EEEecc----CcHHHHHHHHHHHHHhCCC----CcEEEEC
Confidence 888532 221 245678888877776 5555433
No 484
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=32.45 E-value=70 Score=29.41 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=36.1
Q ss_pred eEEEEcCCccHHHHHHHH----H---CCCCeEEEeec-hHHHhcCCC---------CCCeEEEEc-CCCCCCCCceEEEe
Q 023384 121 SLVDVGGGNGSLSRIISE----A---FPGIKCTVLDL-PHVVANLPE---------ADNLKYIAG-DMFQFIPPADAFLF 182 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~----~---~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~-d~~~~~p~~D~v~~ 182 (283)
+|.=||+|+. ++..+.+ . .|..+++..|+ ++.++.... ...+++... |..+.+.++|.|+.
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 5778999996 6655433 2 35567899999 655433221 334554333 33334666777765
Q ss_pred c
Q 023384 183 K 183 (283)
Q Consensus 183 ~ 183 (283)
.
T Consensus 81 ~ 81 (437)
T cd05298 81 Q 81 (437)
T ss_pred E
Confidence 3
No 485
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.43 E-value=72 Score=28.50 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=27.2
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEE---eec
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTV---LDL 150 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~---~D~ 150 (283)
..++++|||.|.++.-+...++.-.++. +|.
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR 217 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDR 217 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecc
Confidence 7899999999999999999998877665 665
No 486
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.43 E-value=2.7e+02 Score=22.45 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=31.7
Q ss_pred CeEEEEcCCccHHHHHHHHHC--CCCeEEEe-ec-hHHHhcC----C-CCCCeEEEEcCCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAF--PGIKCTVL-DL-PHVVANL----P-EADNLKYIAGDMFQ 172 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~-D~-~~~~~~a----~-~~~rv~~~~~d~~~ 172 (283)
+++|=+| |+|..+..+++.+ .+.++++. +. ++..+.. . ...++.+...|+.+
T Consensus 6 ~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 66 (247)
T PRK05565 6 KVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSS 66 (247)
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 4566555 5677777766654 35677776 66 3332211 1 14568899999987
No 487
>PRK13243 glyoxylate reductase; Reviewed
Probab=32.35 E-value=94 Score=27.35 Aligned_cols=80 Identities=11% Similarity=0.168 Sum_probs=41.2
Q ss_pred CCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHH
Q 023384 119 LGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 119 ~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~ 196 (283)
.++|.=||.|. |......++.+ +.++++.|. +.... .. ...+.+ .++.+-++..|+|+++-.+- + +...
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~-~~-~~~~~~--~~l~ell~~aDiV~l~lP~t---~-~T~~ 220 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGF-GMRILYYSRTRKPEA-EK-ELGAEY--RPLEELLRESDFVSLHVPLT---K-ETYH 220 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEEEECCCCChhh-HH-HcCCEe--cCHHHHHhhCCEEEEeCCCC---h-HHhh
Confidence 46888888764 55444455555 568899997 22211 11 111111 12222244688888755432 2 2223
Q ss_pred HH-HHHHHhhcc
Q 023384 197 IL-KKRRAAIAS 207 (283)
Q Consensus 197 iL-~~~~~~L~p 207 (283)
++ ++..+.|||
T Consensus 221 ~i~~~~~~~mk~ 232 (333)
T PRK13243 221 MINEERLKLMKP 232 (333)
T ss_pred ccCHHHHhcCCC
Confidence 33 456666776
No 488
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=32.32 E-value=1e+02 Score=23.98 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcC
Q 023384 194 GLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIF 273 (283)
Q Consensus 194 ~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 273 (283)
-+++++-+++.|.| ||+ +.++.+.+..-... ..-|.......+--.|-++||+.++-+..|
T Consensus 72 E~~l~~~l~~~lsp---g~~-lfVeYv~DrET~~~---------------lqkG~~p~atrLGfeL~k~GftwfkdWY~P 132 (192)
T COG4353 72 EVKLYKVLYNFLSP---GGK-LFVEYVRDRETRYR---------------LQKGKPPVATRLGFELLKAGFTWFKDWYFP 132 (192)
T ss_pred HHHHHHHHHHhcCC---CCc-eEEEEEechhHHHH---------------HHcCCCCccchhhHHHHhCcceeeeeeecc
Confidence 36889999999999 454 56676665432210 012333344455567888999998877654
No 489
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=32.18 E-value=72 Score=29.20 Aligned_cols=62 Identities=18% Similarity=0.310 Sum_probs=37.1
Q ss_pred eEEEEcCCccHHHHHHHH-------HCCCCeEEEeec-hHHHhcCC----C-----CCCeEEEEc-CCCCCCCCceEEEe
Q 023384 121 SLVDVGGGNGSLSRIISE-------AFPGIKCTVLDL-PHVVANLP----E-----ADNLKYIAG-DMFQFIPPADAFLF 182 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~-------~~p~~~~~~~D~-~~~~~~a~----~-----~~rv~~~~~-d~~~~~p~~D~v~~ 182 (283)
+|.=||||+. ++..+.+ .+|..+++.+|+ ++.++... + ...+++... |..+.+.++|.|+.
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 5778999996 7766543 245677899998 65444321 1 334554433 33335666777765
Q ss_pred c
Q 023384 183 K 183 (283)
Q Consensus 183 ~ 183 (283)
.
T Consensus 81 ~ 81 (425)
T cd05197 81 Q 81 (425)
T ss_pred e
Confidence 3
No 490
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=32.15 E-value=1.6e+02 Score=26.49 Aligned_cols=93 Identities=17% Similarity=0.195 Sum_probs=61.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------CC-CeEEEEcCCCCC---CC-CceEEEe
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE-------AD-NLKYIAGDMFQF---IP-PADAFLF 182 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------~~-rv~~~~~d~~~~---~p-~~D~v~~ 182 (283)
.+..++||.=+|+|.=++..++..++ .+++.-|+ ++.++..++ .+ ++++...|...- .. .||+|=+
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 34569999999999999999999765 46788999 776655543 33 788888777651 22 4888865
Q ss_pred cccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 183 KLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 183 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
-- +.- ....|..+.++++. ||.|.|.-
T Consensus 128 DP----fGS--p~pfldsA~~~v~~---gGll~vTa 154 (377)
T PF02005_consen 128 DP----FGS--PAPFLDSALQAVKD---GGLLCVTA 154 (377)
T ss_dssp ------SS----HHHHHHHHHHEEE---EEEEEEEE
T ss_pred CC----CCC--ccHhHHHHHHHhhc---CCEEEEec
Confidence 21 222 35789999999997 56665544
No 491
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=32.14 E-value=1.9e+02 Score=21.43 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=42.7
Q ss_pred CCeEEEEcCCccH--HHHHHHHHCCCCeEEEee-c-hHHHhcCCC-CCCeEEEEcCCCCCCCCceEEEecccccCCChhH
Q 023384 119 LGSLVDVGGGNGS--LSRIISEAFPGIKCTVLD-L-PHVVANLPE-ADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDED 193 (283)
Q Consensus 119 ~~~vlDvGgG~G~--~~~~l~~~~p~~~~~~~D-~-~~~~~~a~~-~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~ 193 (283)
..+|-=||+|.=. ++..|.++ ...++.+- . ++..+.+.. -....+. +..+-...+|+|++. .+|+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~a--g~~v~~v~srs~~sa~~a~~~~~~~~~~--~~~~~~~~aDlv~ia-----vpDda 80 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARA--GHEVVGVYSRSPASAERAAAFIGAGAIL--DLEEILRDADLVFIA-----VPDDA 80 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHT--TSEEEEESSCHH-HHHHHHC--TT-------TTGGGCC-SEEEE------S-CCH
T ss_pred ccEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCccccccccccccccccc--ccccccccCCEEEEE-----echHH
Confidence 3678889987533 33333333 44555543 3 323333322 2222222 222223469999984 47887
Q ss_pred HHHHHHHHHHh--hccCCCCcEEEEEee
Q 023384 194 GLKILKKRRAA--IASNGERGKVIIIDI 219 (283)
Q Consensus 194 ~~~iL~~~~~~--L~p~~~gg~lli~d~ 219 (283)
...+.+.+... .+| |++++...
T Consensus 81 I~~va~~La~~~~~~~----g~iVvHtS 104 (127)
T PF10727_consen 81 IAEVAEQLAQYGAWRP----GQIVVHTS 104 (127)
T ss_dssp HHHHHHHHHCC--S-T----T-EEEES-
T ss_pred HHHHHHHHHHhccCCC----CcEEEECC
Confidence 77777777776 677 78777664
No 492
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=32.12 E-value=1.5e+02 Score=25.90 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=53.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeech--HHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHH
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLP--HVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~--~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~ 196 (283)
.++|.=||||+=..+.++--+-..+.+++-=.+ ...+.|++ +..+ ..+..+..+.+|+|++ -.||+.-.+
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~-dGf~--V~~v~ea~k~ADvim~-----L~PDe~q~~ 89 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKE-DGFK--VYTVEEAAKRADVVMI-----LLPDEQQKE 89 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHh-cCCE--eecHHHHhhcCCEEEE-----eCchhhHHH
Confidence 479999999998888887777667775443222 22333332 2222 2233333556899877 248887788
Q ss_pred HHH-HHHHhhcc
Q 023384 197 ILK-KRRAAIAS 207 (283)
Q Consensus 197 iL~-~~~~~L~p 207 (283)
+.+ .|...|+.
T Consensus 90 vy~~~I~p~Lk~ 101 (338)
T COG0059 90 VYEKEIAPNLKE 101 (338)
T ss_pred HHHHHhhhhhcC
Confidence 888 88899997
No 493
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=32.00 E-value=1.3e+02 Score=25.98 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechH-HHhcC----CC--CCCeEEEEcCCCCCCC-----CceEEEeccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPH-VVANL----PE--ADNLKYIAGDMFQFIP-----PADAFLFKLV 185 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a----~~--~~rv~~~~~d~~~~~p-----~~D~v~~~~v 185 (283)
.++.|+-+| -.-..+++++-..---++.++|+.+ .+.-. ++ ..+++.+..|..+|+| .||+++.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT--- 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFIT--- 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeec---
Confidence 346799998 5556666665554344788999844 33322 22 5668899999999988 3899876
Q ss_pred ccCCChhHHH----HHHHHHHHhhcc
Q 023384 186 FHGLGDEDGL----KILKKRRAAIAS 207 (283)
Q Consensus 186 lh~~~d~~~~----~iL~~~~~~L~p 207 (283)
++++.+ .+|.+=..+||.
T Consensus 228 ----DPpeTi~alk~FlgRGI~tLkg 249 (354)
T COG1568 228 ----DPPETIKALKLFLGRGIATLKG 249 (354)
T ss_pred ----CchhhHHHHHHHHhccHHHhcC
Confidence 333333 334455566764
No 494
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=31.88 E-value=3e+02 Score=23.31 Aligned_cols=94 Identities=12% Similarity=0.154 Sum_probs=55.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-----hHHHhcCCCCCCeEEEEcCCCCCCC------CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-----PHVVANLPEADNLKYIAGDMFQFIP------PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-----~~~~~~a~~~~rv~~~~~d~~~~~p------~~D~v~~~ 183 (283)
++...+||-+|.++|.....+..-. |.--+..++. -+.+.-|++..+|--+.-|..-|.. -.|+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 5677999999999999887766543 4444444443 1234555555555555556555422 2465554
Q ss_pred ccccCCChhH-HHHHHHHHHHhhccCCCCcEEEEE
Q 023384 184 LVFHGLGDED-GLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 184 ~vlh~~~d~~-~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
+.+.++ +.-+.-|..--||+ ||.++|.
T Consensus 233 ----Dvaqpdq~RivaLNA~~FLk~---gGhfvis 260 (317)
T KOG1596|consen 233 ----DVAQPDQARIVALNAQYFLKN---GGHFVIS 260 (317)
T ss_pred ----cCCCchhhhhhhhhhhhhhcc---CCeEEEE
Confidence 444333 34444567777998 6766553
No 495
>PF13319 DUF4090: Protein of unknown function (DUF4090)
Probab=31.75 E-value=42 Score=22.41 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=22.7
Q ss_pred ccCCccCCHHHHHHHHHHCCCCeeeEE
Q 023384 244 NATGKERTESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 244 ~~~~~~~t~~e~~~ll~~aGf~~~~~~ 270 (283)
..|.+..+++++.+.|.+|||...+-.
T Consensus 53 r~GaKH~~q~~Lnq~L~~Ag~~~LK~K 79 (84)
T PF13319_consen 53 RIGAKHFDQEELNQRLIDAGWEGLKDK 79 (84)
T ss_pred HhccccCCHHHHHHHHHHcCccccchh
Confidence 357888999999999999999877643
No 496
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=31.72 E-value=2.1e+02 Score=25.18 Aligned_cols=78 Identities=21% Similarity=0.220 Sum_probs=42.2
Q ss_pred CeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHH
Q 023384 120 GSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKI 197 (283)
Q Consensus 120 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~i 197 (283)
.+|.=||+|. |......++.+ +.++++.|. +..... .+.+ ..++.+-+...|+|++.-.+ +++....+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~-G~~V~~~d~~~~~~~~-----~~~~-~~~l~ell~~aDiVil~lP~---t~~t~~li 216 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF-GATITAYDAYPNKDLD-----FLTY-KDSVKEAIKDADIISLHVPA---NKESYHLF 216 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCChhHhhh-----hhhc-cCCHHHHHhcCCEEEEeCCC---cHHHHHHH
Confidence 5788888775 33333334443 678999997 332111 1111 11211123468988876544 23323445
Q ss_pred HHHHHHhhcc
Q 023384 198 LKKRRAAIAS 207 (283)
Q Consensus 198 L~~~~~~L~p 207 (283)
.++..+.|++
T Consensus 217 ~~~~l~~mk~ 226 (330)
T PRK12480 217 DKAMFDHVKK 226 (330)
T ss_pred hHHHHhcCCC
Confidence 6777888887
No 497
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=31.66 E-value=1.2e+02 Score=25.49 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=36.6
Q ss_pred eEEEEcCCCC-CCC-CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 163 LKYIAGDMFQ-FIP-PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 163 v~~~~~d~~~-~~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.++...|... .+| .+|++++...-..+++++ +..+.+.|.. ||+++++-
T Consensus 182 y~V~~~~l~~~~IP~~~d~Lvi~~P~~~ls~~e----~~~l~~yl~~---GG~ll~~~ 232 (271)
T PF09822_consen 182 YDVEELNLANEEIPDDADVLVIAGPKTDLSEEE----LYALDQYLMN---GGKLLILL 232 (271)
T ss_pred CceeecCCcccccCCCCCEEEEECCCCCCCHHH----HHHHHHHHHc---CCeEEEEE
Confidence 6777777755 676 499999988887788866 5667777876 67776644
No 498
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=31.51 E-value=2.5e+02 Score=24.58 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=27.9
Q ss_pred CCCCceEEEecccccCCCh-------hHHHHHHHHHHHhhccC-CCCcEEEEEe
Q 023384 173 FIPPADAFLFKLVFHGLGD-------EDGLKILKKRRAAIASN-GERGKVIIID 218 (283)
Q Consensus 173 ~~p~~D~v~~~~vlh~~~d-------~~~~~iL~~~~~~L~p~-~~gg~lli~d 218 (283)
.+.+.|+|+...-...-+. +...++++++.+.++.. .+.+.++++.
T Consensus 72 ~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 72 AFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred HhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 4456899888665532221 13567778888777552 1357777765
No 499
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=31.02 E-value=3.3e+02 Score=23.40 Aligned_cols=92 Identities=14% Similarity=0.184 Sum_probs=49.6
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEE---cCCCCC----C--CCceEEEecc
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIA---GDMFQF----I--PPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~---~d~~~~----~--p~~D~v~~~~ 184 (283)
.....+||..|+| .|..+..++++....+++.++. +...+.+++..-..++. .++.+. . ..+|+++-..
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~ 244 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAV 244 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEcc
Confidence 3455788887764 4777778888765336666665 43333322211111111 111110 1 2478776532
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
- .. ..++...+.|++ +|+++.+.
T Consensus 245 g-----~~---~~~~~~~~~l~~---~G~~v~~g 267 (347)
T cd05278 245 G-----FE---ETFEQAVKVVRP---GGTIANVG 267 (347)
T ss_pred C-----CH---HHHHHHHHHhhc---CCEEEEEc
Confidence 1 11 357778889998 68887664
No 500
>PRK08263 short chain dehydrogenase; Provisional
Probab=30.82 E-value=3.1e+02 Score=22.77 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=32.1
Q ss_pred CeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ 172 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~ 172 (283)
++||-.| |+|.++..+++++ .+.++++.+. ++.++...+ ..++.++..|+.+
T Consensus 4 k~vlItG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~ 60 (275)
T PRK08263 4 KVWFITG-ASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTD 60 (275)
T ss_pred CEEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCC
Confidence 4566555 5677777776654 3567888887 444432221 3467778888876
Done!