Query 023385
Match_columns 283
No_of_seqs 220 out of 1380
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:53:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.9 7.1E-24 2.4E-28 183.1 18.1 123 129-251 2-125 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 2.2E-24 7.5E-29 188.6 12.8 127 129-255 7-134 (196)
3 2hfr_A Fowlicidin-3, cathelici 11.6 65 0.0022 18.4 0.5 20 23-42 7-26 (27)
4 1v54_A Cytochrome C oxidase po 9.6 3.1E+02 0.011 26.5 4.9 68 210-277 344-424 (514)
5 2gsm_A Cytochrome C oxidase su 8.9 2.8E+02 0.0094 27.3 4.2 67 211-277 388-467 (566)
6 2b9s_B DNA topoisomerase I-lik 8.6 68 0.0023 22.4 -0.2 16 67-82 22-37 (62)
7 1fft_A Ubiquinol oxidase; elec 8.0 3.1E+02 0.01 27.6 4.2 69 210-278 387-468 (663)
8 3vr8_C Cytochrome B-large subu 7.6 5.2E+02 0.018 21.6 4.9 20 172-191 122-143 (188)
9 3arc_J Photosystem II reaction 7.5 1.5E+02 0.0052 18.8 1.1 16 19-34 4-19 (40)
10 2cxa_A Leucyl/phenylalanyl-tRN 5.4 1E+02 0.0036 27.3 -0.8 64 13-80 69-132 (256)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.92 E-value=7.1e-24 Score=183.10 Aligned_cols=123 Identities=25% Similarity=0.329 Sum_probs=106.9
Q ss_pred cChHHHHHHHHHHHHHHHHHHhchH-HHHHhhhccccccccCCcchheehhcccCcHHHHHHHHHHHHHHHHHHHHHhCh
Q 023385 129 IGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207 (283)
Q Consensus 129 ~~~pvT~~Liai~v~vfll~~~~~~-~l~~~g~~~~~~i~~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~ 207 (283)
+.+|+|..++++|+++|+++...+. ...++....+..+.++|+||++|++|+|.|+.|+++||+.++.+|..+|+.+|+
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~ 81 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS 81 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 3468999999999999999877544 233444444445678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCceechHHHHHHHHHHHHHHH
Q 023385 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFI 251 (283)
Q Consensus 208 ~rfl~lyllsgi~g~l~s~~~~~~~~vGaSGaIfGLiga~~~~~ 251 (283)
+|++.+|+.+++.+++.++++.+..++|+||+++|++++.++..
T Consensus 82 ~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~ 125 (181)
T 2xov_A 82 GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRG 125 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877669999999999999887643
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.91 E-value=2.2e-24 Score=188.62 Aligned_cols=127 Identities=19% Similarity=0.269 Sum_probs=108.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHhchH-HHHHhhhccccccccCCcchheehhcccCcHHHHHHHHHHHHHHHHHHHHHhCh
Q 023385 129 IGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP 207 (283)
Q Consensus 129 ~~~pvT~~Liai~v~vfll~~~~~~-~l~~~g~~~~~~i~~gq~WRLlTs~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~ 207 (283)
+.+|+|..++++|+++|+++...+. ...++....+..+.++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|+
T Consensus 7 ~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~ 86 (196)
T 2nr9_A 7 QQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGS 86 (196)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 4478999999999999999877654 334444444444578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCceechHHHHHHHHHHHHHHHHhhh
Q 023385 208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHR 255 (283)
Q Consensus 208 ~rfl~lyllsgi~g~l~s~~~~~~~~vGaSGaIfGLiga~~~~~~~~~ 255 (283)
++++.+|+++++.+++.++++.+..++||||++||++++.++....++
T Consensus 87 ~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~~ 134 (196)
T 2nr9_A 87 VKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNH 134 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988776799999999999998766533333
No 3
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=11.56 E-value=65 Score=18.44 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=16.0
Q ss_pred CcchhhhhhhhcchhhhhHh
Q 023385 23 PPLNLITTTAKHSLSVSLSR 42 (283)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ 42 (283)
.|..+.+++|+..+-.+.||
T Consensus 7 vpvaintvaaginlykairr 26 (27)
T 2hfr_A 7 VPVAINTVAAGINLYKAIRR 26 (27)
T ss_dssp SSSHHHHHHHHHTSTTTTTC
T ss_pred CcceEEEeehhhhHHHHHhc
Confidence 46778888999988887776
No 4
>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A* 1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A* 2ein_A* 2occ_A* 2y69_A* 2ybb_L* 2zxw_A* 3abk_A* 3abl_A* 3abm_A* 3ag1_A* ...
Probab=9.65 E-value=3.1e+02 Score=26.51 Aligned_cols=68 Identities=13% Similarity=0.242 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHh-----hhcCC------ceechH-HHHHHHHHHHHHHHHhhhh-hcCCChhhHHHHHHHHHHHH
Q 023385 210 YLGVYFSSAIASSAMSY-----RFCNS------PAVGAS-GAIFGLVGSFAVFIMRHRN-ILGGGKEELQHLAKVIIFNM 276 (283)
Q Consensus 210 fl~lyllsgi~g~l~s~-----~~~~~------~~vGaS-GaIfGLiga~~~~~~~~~~-~~~~~~~~l~~i~~~i~inl 276 (283)
++..|..+|+.|-+.+. ..+++ .+...+ |++++++++.....|+-.. .+.+.-.+...+...+++|+
T Consensus 344 ~i~~F~~GGltGv~la~~~~d~~~HdT~~VvaHfH~vl~~g~vf~~~a~~y~w~P~~~G~~~~~~l~~~~fwl~~iG~~l 423 (514)
T 1v54_A 344 FIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNM 423 (514)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHTTBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcchHhhcccccccccccCceEEEeeEEeeehHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 34556666666666532 12221 244555 7889999988888887552 22222223344455555555
Q ss_pred H
Q 023385 277 L 277 (283)
Q Consensus 277 v 277 (283)
.
T Consensus 424 ~ 424 (514)
T 1v54_A 424 T 424 (514)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A* 3fyi_A* 1m57_A* 3oma_A* 3om3_A* 3omi_A* 3omn_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A*
Probab=8.86 E-value=2.8e+02 Score=27.31 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhh-----hcCC------ceechH-HHHHHHHHHHHHHHHhhhh-hcCCChhhHHHHHHHHHHHHH
Q 023385 211 LGVYFSSAIASSAMSYR-----FCNS------PAVGAS-GAIFGLVGSFAVFIMRHRN-ILGGGKEELQHLAKVIIFNML 277 (283)
Q Consensus 211 l~lyllsgi~g~l~s~~-----~~~~------~~vGaS-GaIfGLiga~~~~~~~~~~-~~~~~~~~l~~i~~~i~inlv 277 (283)
+..|.++|+.|-+.+.. .+++ .+.+.+ |++++++++.....|+-.. .+...-.+...+...+++|+.
T Consensus 388 i~~F~iGGltGvila~~~~d~~~HdTy~VvAHfH~vl~gg~vf~~fg~~y~w~P~~tG~~~~~~l~~~~Fwl~~iG~~l~ 467 (566)
T 2gsm_A 388 LFLFTVGGVTGIVLSQASVDRYYHDTYYVVAHFHYVMSLGAVFGIFAGIYFWIGKMSGRQYPEWAGKLHFWMMFVGANLT 467 (566)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHTTBHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHSEECCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhccchhhhcccchhhhcccceEEEEEeehhhHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHH
Confidence 44566666666665322 2221 345555 7888999888888887552 222222333444445555543
No 6
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=8.61 E-value=68 Score=22.40 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=13.6
Q ss_pred cCCCcchhhhhhcccc
Q 023385 67 CHIPRLKDQWCENAFR 82 (283)
Q Consensus 67 ~~~~~~~~~w~~~~~~ 82 (283)
|-.|||+-+||.++.-
T Consensus 22 YlDPRItvaWcKr~~V 37 (62)
T 2b9s_B 22 YIDPRIICSWAKAQDV 37 (62)
T ss_dssp TSCHHHHHHHHHHTTC
T ss_pred ccCchhhhhhhhhcCC
Confidence 5689999999998764
No 7
>1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.24.1.1
Probab=7.97 E-value=3.1e+02 Score=27.59 Aligned_cols=69 Identities=12% Similarity=0.090 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhh-----hcCC------ceechHH-HHHHHHHHHHHHHHhhh-hhcCCChhhHHHHHHHHHHHH
Q 023385 210 YLGVYFSSAIASSAMSYR-----FCNS------PAVGASG-AIFGLVGSFAVFIMRHR-NILGGGKEELQHLAKVIIFNM 276 (283)
Q Consensus 210 fl~lyllsgi~g~l~s~~-----~~~~------~~vGaSG-aIfGLiga~~~~~~~~~-~~~~~~~~~l~~i~~~i~inl 276 (283)
++..|..+|+.|-+.+.. .+++ .+...+| +++++++++....|+-. +.+...-.+...+...+++|+
T Consensus 387 fi~~F~iGGltGv~la~~~~d~~lHdTy~VVAHFHyvl~gg~vf~~~ag~~yw~P~~tG~~l~~~l~k~~Fwl~fiG~~l 466 (663)
T 1fft_A 387 FIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFV 466 (663)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHTTTTBHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHhhcccchhhhhccceeEEeeeeehhHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHH
Confidence 345566777777665321 2221 2445555 88889988777777655 223222233444455666665
Q ss_pred HH
Q 023385 277 LH 278 (283)
Q Consensus 277 vi 278 (283)
.+
T Consensus 467 ~f 468 (663)
T 1fft_A 467 AF 468 (663)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 8
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=7.60 E-value=5.2e+02 Score=21.59 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=13.8
Q ss_pred chheehhccc--CcHHHHHHHH
Q 023385 172 WRLATSAFLH--ANIAHLMVNC 191 (283)
Q Consensus 172 WRLlTs~FlH--~~~~HLl~Nm 191 (283)
|-+....+.| .|+-||+.++
T Consensus 122 ~~l~~a~~yH~~nGIRHLiwD~ 143 (188)
T 3vr8_C 122 FIIAFPIAFHTLNGIRFIGFDM 143 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHh
Confidence 4455566667 5889988775
No 9
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=7.49 E-value=1.5e+02 Score=18.77 Aligned_cols=16 Identities=31% Similarity=0.196 Sum_probs=13.1
Q ss_pred ccCCCcchhhhhhhhc
Q 023385 19 WLTRPPLNLITTTAKH 34 (283)
Q Consensus 19 ~~~~~~~~~~~~~~~~ 34 (283)
..++-|+-+|+|+++.
T Consensus 4 ~tGRiPLWlvgtv~G~ 19 (40)
T 3arc_J 4 EGGRIPLWIVATVAGM 19 (40)
T ss_dssp CTTSSCHHHHHHHHHH
T ss_pred CcCcccEEeeeeehhh
Confidence 3578899999999886
No 10
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=5.39 E-value=1e+02 Score=27.35 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=38.3
Q ss_pred CCCCccccCCCcchhhhhhhhcchhhhhHhhhhccCccchhhhhcccccccccccCCCcchhhhhhcc
Q 023385 13 HREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENA 80 (283)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 80 (283)
+.+|+.|..|.|=-++-. ..+|.+|++||.+.... ...-+-..|.++-+-|..||-...|+...
T Consensus 69 ~~~pilWwsP~pR~Vl~p-~~~hisrSLrk~lr~~~---f~vt~n~aF~~VI~~Ca~~R~~gTWI~~e 132 (256)
T 2cxa_A 69 PGDPILWWSPDPRAVLWP-ESLHISRSMKRFHKRSP---YRVTMNYAFGQVIEGCASDREEGTWITRG 132 (256)
T ss_dssp TTSCCEEECCSSEEEECG-GGCCCCHHHHHHHHTCC---CEEEESSCHHHHHHHHHTC---CTTCCHH
T ss_pred CCCccceECCCCCEEecc-ccccCCHHHHHHHCCCC---eEEEEcCcHHHHHHHhcCCCCCCCCCCHH
Confidence 347888888888777765 68999999999753211 11123344555544444455455786543
Done!