Query 023386
Match_columns 283
No_of_seqs 266 out of 2353
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:38:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 99.9 3.7E-26 8.1E-31 222.3 21.6 121 144-264 446-566 (569)
2 COG3349 Uncharacterized conser 99.9 1.2E-22 2.6E-27 191.0 12.3 102 149-251 362-463 (485)
3 TIGR02732 zeta_caro_desat caro 99.9 1.3E-21 2.9E-26 187.9 17.5 102 147-248 373-474 (474)
4 PLN02612 phytoene desaturase 99.8 5.9E-18 1.3E-22 165.9 19.7 105 150-254 442-551 (567)
5 COG2081 Predicted flavoprotein 99.7 3.7E-17 7.9E-22 149.6 11.0 162 29-190 2-205 (408)
6 TIGR02731 phytoene_desat phyto 99.7 1.6E-15 3.4E-20 144.9 17.5 93 156-248 357-453 (453)
7 KOG0029 Amine oxidase [Seconda 99.7 1.9E-15 4.2E-20 145.3 16.5 73 26-98 11-83 (501)
8 PF03486 HI0933_like: HI0933-l 99.6 5.8E-16 1.3E-20 145.8 6.6 160 31-190 1-204 (409)
9 PRK07233 hypothetical protein; 99.5 1.7E-13 3.6E-18 129.5 16.5 91 160-250 340-430 (434)
10 PF13450 NAD_binding_8: NAD(P) 99.4 3E-13 6.4E-18 95.7 6.6 65 35-100 1-67 (68)
11 COG3380 Predicted NAD/FAD-depe 99.3 2.8E-11 6.2E-16 105.7 13.9 70 31-101 2-71 (331)
12 TIGR00562 proto_IX_ox protopor 99.3 9.8E-12 2.1E-16 118.9 7.9 71 30-101 2-76 (462)
13 PRK11883 protoporphyrinogen ox 99.2 1E-11 2.2E-16 118.1 7.2 70 31-101 1-72 (451)
14 PRK07208 hypothetical protein; 99.2 1.8E-11 3.9E-16 117.8 8.9 73 28-101 2-74 (479)
15 PRK12416 protoporphyrinogen ox 99.2 1.6E-11 3.4E-16 117.8 7.0 71 30-101 1-77 (463)
16 PLN02268 probable polyamine ox 99.2 3.3E-11 7.2E-16 114.6 7.8 69 31-100 1-71 (435)
17 PLN02576 protoporphyrinogen ox 99.2 4.7E-11 1E-15 115.4 7.8 68 29-97 11-79 (496)
18 COG1231 Monoamine oxidase [Ami 99.2 1.5E-09 3.2E-14 101.5 16.1 63 28-91 5-67 (450)
19 COG1233 Phytoene dehydrogenase 99.1 1.7E-10 3.8E-15 111.4 7.8 70 29-99 2-72 (487)
20 COG1232 HemY Protoporphyrinoge 99.1 3.6E-10 7.7E-15 107.0 7.5 70 31-101 1-72 (444)
21 KOG0685 Flavin-containing amin 99.0 1.2E-09 2.6E-14 102.2 8.6 70 30-100 21-92 (498)
22 PLN02568 polyamine oxidase 99.0 1.3E-09 2.7E-14 106.5 8.9 61 30-91 5-70 (539)
23 TIGR02734 crtI_fam phytoene de 99.0 9.1E-10 2E-14 106.7 7.6 56 33-89 1-56 (502)
24 TIGR02733 desat_CrtD C-3',4' d 99.0 1.3E-09 2.8E-14 105.4 8.0 58 31-89 2-59 (492)
25 COG0562 Glf UDP-galactopyranos 99.0 1.7E-09 3.7E-14 96.8 7.9 73 30-102 1-75 (374)
26 TIGR00031 UDP-GALP_mutase UDP- 98.9 2.9E-09 6.2E-14 99.5 8.3 71 30-101 1-72 (377)
27 TIGR00275 flavoprotein, HI0933 98.9 7.4E-09 1.6E-13 97.7 9.9 42 34-75 1-42 (400)
28 COG2907 Predicted NAD/FAD-bind 98.9 3.6E-09 7.8E-14 95.6 7.1 73 28-101 6-82 (447)
29 TIGR02730 carot_isom carotene 98.9 3.9E-09 8.5E-14 102.2 6.9 59 31-90 1-59 (493)
30 PLN02529 lysine-specific histo 98.9 8.3E-09 1.8E-13 103.6 9.0 65 29-93 159-226 (738)
31 PLN02328 lysine-specific histo 98.8 1.2E-08 2.5E-13 103.1 9.3 65 29-93 237-304 (808)
32 PLN02676 polyamine oxidase 98.8 9.7E-09 2.1E-13 99.3 8.3 60 29-89 25-85 (487)
33 KOG1276 Protoporphyrinogen oxi 98.8 8.9E-09 1.9E-13 95.3 6.9 73 29-101 10-87 (491)
34 PRK13977 myosin-cross-reactive 98.8 1.3E-08 2.7E-13 99.0 8.0 71 30-101 22-97 (576)
35 PLN03000 amine oxidase 98.7 4E-08 8.6E-13 99.6 8.1 68 29-96 183-253 (881)
36 PRK06481 fumarate reductase fl 98.7 9.4E-10 2E-14 106.8 -3.5 41 30-70 61-101 (506)
37 COG1635 THI4 Ribulose 1,5-bisp 98.7 2.1E-08 4.6E-13 85.6 4.5 41 30-70 30-70 (262)
38 PF01946 Thi4: Thi4 family; PD 98.7 2E-08 4.3E-13 85.9 3.9 41 30-70 17-57 (230)
39 PF01593 Amino_oxidase: Flavin 98.6 1.2E-07 2.5E-12 88.3 7.5 62 40-101 1-63 (450)
40 PLN02172 flavin-containing mon 98.6 8.1E-08 1.7E-12 92.3 5.9 43 29-71 9-51 (461)
41 TIGR03467 HpnE squalene-associ 98.5 3.2E-07 6.9E-12 86.1 8.7 99 151-249 321-419 (419)
42 COG0644 FixC Dehydrogenases (f 98.5 1.1E-07 2.3E-12 89.6 5.1 43 29-71 2-44 (396)
43 PRK09754 phenylpropionate diox 98.5 1.1E-06 2.3E-11 82.8 11.9 39 30-68 144-182 (396)
44 PRK04176 ribulose-1,5-biphosph 98.5 1.6E-07 3.6E-12 83.4 5.3 41 30-70 25-65 (257)
45 TIGR00292 thiazole biosynthesi 98.5 1.7E-07 3.7E-12 83.1 5.3 40 30-69 21-60 (254)
46 TIGR03862 flavo_PP4765 unchara 98.5 1E-07 2.2E-12 89.0 3.4 135 53-187 1-176 (376)
47 PLN02976 amine oxidase 98.4 3.4E-07 7.4E-12 96.2 6.7 61 30-90 693-753 (1713)
48 PRK10157 putative oxidoreducta 98.4 3.5E-07 7.5E-12 87.2 5.5 39 30-68 5-43 (428)
49 KOG1399 Flavin-containing mono 98.4 3.6E-07 7.9E-12 87.0 5.1 44 29-72 5-48 (448)
50 PLN00093 geranylgeranyl diphos 98.4 6.4E-07 1.4E-11 85.9 6.7 36 29-64 38-73 (450)
51 PRK12779 putative bifunctional 98.4 5.6E-07 1.2E-11 93.3 6.4 42 29-70 305-346 (944)
52 PRK07121 hypothetical protein; 98.4 8.4E-07 1.8E-11 86.0 7.2 42 29-70 19-60 (492)
53 PRK05249 soluble pyridine nucl 98.3 5.2E-07 1.1E-11 86.6 5.3 43 28-70 3-45 (461)
54 PF13738 Pyr_redox_3: Pyridine 98.3 4.5E-07 9.7E-12 76.9 4.2 39 34-72 1-40 (203)
55 PF12831 FAD_oxidored: FAD dep 98.3 5E-07 1.1E-11 86.1 4.9 39 32-70 1-39 (428)
56 PRK10015 oxidoreductase; Provi 98.3 6.2E-07 1.3E-11 85.5 5.5 39 30-68 5-43 (429)
57 PRK07364 2-octaprenyl-6-methox 98.3 7.3E-07 1.6E-11 84.1 5.8 38 28-65 16-53 (415)
58 PRK06115 dihydrolipoamide dehy 98.3 6E-07 1.3E-11 86.4 5.3 41 30-70 3-43 (466)
59 PLN02852 ferredoxin-NADP+ redu 98.3 8.7E-07 1.9E-11 85.5 6.3 42 29-70 25-68 (491)
60 TIGR03315 Se_ygfK putative sel 98.3 8.5E-07 1.8E-11 91.7 6.5 42 29-70 536-577 (1012)
61 PRK04965 NADH:flavorubredoxin 98.3 1.3E-05 2.7E-10 75.0 13.8 37 30-66 141-177 (377)
62 PF00743 FMO-like: Flavin-bind 98.3 6.4E-07 1.4E-11 87.5 4.9 41 31-71 2-42 (531)
63 TIGR01377 soxA_mon sarcosine o 98.3 9.4E-07 2E-11 82.2 5.5 36 31-66 1-36 (380)
64 COG2072 TrkA Predicted flavopr 98.3 1.2E-06 2.5E-11 83.9 6.0 45 28-72 6-51 (443)
65 PF01494 FAD_binding_3: FAD bi 98.3 8.4E-07 1.8E-11 80.8 4.4 35 31-65 2-36 (356)
66 PRK12831 putative oxidoreducta 98.3 1.5E-06 3.3E-11 83.6 6.3 42 29-70 139-180 (464)
67 PRK12409 D-amino acid dehydrog 98.3 1.1E-06 2.4E-11 82.9 5.2 36 31-66 2-37 (410)
68 COG1148 HdrA Heterodisulfide r 98.2 1.1E-06 2.3E-11 82.9 4.7 41 30-70 124-164 (622)
69 TIGR01292 TRX_reduct thioredox 98.2 1.3E-06 2.9E-11 78.2 5.3 39 31-70 1-39 (300)
70 PF00890 FAD_binding_2: FAD bi 98.2 1.2E-06 2.6E-11 82.7 5.2 39 32-70 1-39 (417)
71 PRK08163 salicylate hydroxylas 98.2 1.4E-06 2.9E-11 81.7 5.4 38 29-66 3-40 (396)
72 TIGR01424 gluta_reduc_2 glutat 98.2 1.3E-06 2.8E-11 83.7 5.2 40 30-70 2-41 (446)
73 TIGR02032 GG-red-SF geranylger 98.2 1.4E-06 3E-11 77.6 5.1 37 31-67 1-37 (295)
74 PRK08010 pyridine nucleotide-d 98.2 1.5E-06 3.3E-11 82.9 5.6 41 30-70 3-44 (441)
75 PTZ00363 rab-GDP dissociation 98.2 1.4E-06 3.1E-11 83.2 5.1 44 29-72 3-46 (443)
76 TIGR01350 lipoamide_DH dihydro 98.2 1.6E-06 3.4E-11 83.2 5.4 40 30-70 1-40 (461)
77 PF01266 DAO: FAD dependent ox 98.2 1.5E-06 3.3E-11 79.2 5.0 35 32-67 1-35 (358)
78 PRK11728 hydroxyglutarate oxid 98.2 3.7E-06 8E-11 79.0 7.7 39 30-68 2-42 (393)
79 PRK07251 pyridine nucleotide-d 98.2 1.7E-06 3.6E-11 82.6 5.4 41 30-70 3-44 (438)
80 TIGR01813 flavo_cyto_c flavocy 98.2 1.5E-06 3.2E-11 82.9 5.0 39 32-70 1-40 (439)
81 PRK09126 hypothetical protein; 98.2 1.6E-06 3.4E-11 81.2 5.1 35 30-64 3-37 (392)
82 PRK07236 hypothetical protein; 98.2 1.7E-06 3.6E-11 81.1 5.3 37 28-64 4-40 (386)
83 PRK06467 dihydrolipoamide dehy 98.2 1.9E-06 4.2E-11 83.0 5.5 42 29-70 3-44 (471)
84 PRK09853 putative selenate red 98.2 1.9E-06 4.1E-11 89.0 5.7 42 29-70 538-579 (1019)
85 PRK06847 hypothetical protein; 98.2 2E-06 4.4E-11 79.9 5.4 35 30-64 4-38 (375)
86 PRK08274 tricarballylate dehyd 98.2 2E-06 4.4E-11 82.6 5.5 42 29-70 3-46 (466)
87 TIGR01421 gluta_reduc_1 glutat 98.2 2E-06 4.2E-11 82.5 5.3 40 30-70 2-41 (450)
88 PRK12266 glpD glycerol-3-phosp 98.2 2.1E-06 4.5E-11 83.6 5.5 40 29-68 5-44 (508)
89 PRK12769 putative oxidoreducta 98.2 2.9E-06 6.2E-11 85.1 6.6 42 29-70 326-367 (654)
90 PRK06116 glutathione reductase 98.2 2E-06 4.3E-11 82.3 5.2 40 30-70 4-43 (450)
91 PRK06292 dihydrolipoamide dehy 98.2 2.2E-06 4.8E-11 82.2 5.5 41 29-70 2-42 (460)
92 PRK07045 putative monooxygenas 98.2 1.9E-06 4.2E-11 80.7 4.8 37 29-65 4-40 (388)
93 PRK06416 dihydrolipoamide dehy 98.2 2.2E-06 4.7E-11 82.3 5.3 41 30-71 4-44 (462)
94 PRK06753 hypothetical protein; 98.2 2E-06 4.3E-11 79.9 4.9 35 31-65 1-35 (373)
95 PRK08849 2-octaprenyl-3-methyl 98.2 2.3E-06 5E-11 80.2 5.2 34 30-63 3-36 (384)
96 PRK06370 mercuric reductase; V 98.2 2.4E-06 5.3E-11 82.1 5.5 42 28-70 3-44 (463)
97 PRK05976 dihydrolipoamide dehy 98.2 2.6E-06 5.7E-11 82.1 5.6 42 29-71 3-44 (472)
98 PTZ00188 adrenodoxin reductase 98.2 3.5E-06 7.5E-11 80.9 6.3 42 30-71 39-81 (506)
99 TIGR01316 gltA glutamate synth 98.2 3.9E-06 8.5E-11 80.5 6.7 42 29-70 132-173 (449)
100 TIGR02023 BchP-ChlP geranylger 98.1 2.3E-06 5E-11 80.3 5.0 32 31-62 1-32 (388)
101 TIGR01988 Ubi-OHases Ubiquinon 98.1 2.2E-06 4.7E-11 79.7 4.7 34 32-65 1-34 (385)
102 PRK11259 solA N-methyltryptoph 98.1 2.7E-06 5.9E-11 79.0 5.3 37 29-65 2-38 (376)
103 TIGR01373 soxB sarcosine oxida 98.1 1.1E-05 2.3E-10 76.1 9.3 45 21-65 21-67 (407)
104 PRK08013 oxidoreductase; Provi 98.1 2.6E-06 5.6E-11 80.3 5.0 35 30-64 3-37 (400)
105 PRK07818 dihydrolipoamide dehy 98.1 3.2E-06 6.9E-11 81.3 5.7 41 29-70 3-43 (466)
106 PRK08773 2-octaprenyl-3-methyl 98.1 2.8E-06 6.1E-11 79.6 5.2 37 29-65 5-41 (392)
107 PRK12775 putative trifunctiona 98.1 3.1E-06 6.7E-11 88.4 5.9 41 30-70 430-470 (1006)
108 COG0665 DadA Glycine/D-amino a 98.1 3.3E-06 7.2E-11 78.6 5.4 38 29-66 3-40 (387)
109 PRK07494 2-octaprenyl-6-methox 98.1 3.1E-06 6.8E-11 79.1 5.2 37 29-65 6-42 (388)
110 TIGR03143 AhpF_homolog putativ 98.1 3.6E-06 7.7E-11 82.8 5.8 40 30-70 4-43 (555)
111 PRK13369 glycerol-3-phosphate 98.1 3.4E-06 7.4E-11 82.0 5.5 39 29-67 5-43 (502)
112 PRK05714 2-octaprenyl-3-methyl 98.1 2.8E-06 6.1E-11 80.0 4.8 34 30-63 2-35 (405)
113 TIGR01790 carotene-cycl lycope 98.1 3.1E-06 6.8E-11 79.1 5.0 37 32-68 1-37 (388)
114 PRK07608 ubiquinone biosynthes 98.1 3.3E-06 7.1E-11 78.8 5.1 36 30-65 5-40 (388)
115 PRK12778 putative bifunctional 98.1 4.7E-06 1E-10 84.8 6.5 42 29-70 430-471 (752)
116 PRK05732 2-octaprenyl-6-methox 98.1 3.1E-06 6.7E-11 79.2 4.8 35 28-62 1-38 (395)
117 COG0492 TrxB Thioredoxin reduc 98.1 3.7E-06 8.1E-11 76.5 5.2 44 29-72 2-45 (305)
118 PRK10262 thioredoxin reductase 98.1 4.3E-06 9.3E-11 76.4 5.5 42 28-70 4-45 (321)
119 PRK06184 hypothetical protein; 98.1 3.8E-06 8.2E-11 81.6 5.3 37 29-65 2-38 (502)
120 TIGR02360 pbenz_hydroxyl 4-hyd 98.1 3.6E-06 7.8E-11 79.1 5.0 35 30-64 2-36 (390)
121 PRK12834 putative FAD-binding 98.1 4.2E-06 9.1E-11 82.2 5.7 41 30-70 4-46 (549)
122 TIGR02053 MerA mercuric reduct 98.1 4.2E-06 9.1E-11 80.4 5.5 39 31-70 1-39 (463)
123 PRK05868 hypothetical protein; 98.1 4E-06 8.7E-11 78.3 5.2 36 30-65 1-36 (372)
124 TIGR02028 ChlP geranylgeranyl 98.1 4E-06 8.8E-11 79.1 5.2 35 31-65 1-35 (398)
125 TIGR01318 gltD_gamma_fam gluta 98.1 6.5E-06 1.4E-10 79.3 6.7 42 29-70 140-181 (467)
126 PLN02661 Putative thiazole syn 98.1 3.9E-06 8.4E-11 77.4 4.8 40 30-69 92-132 (357)
127 TIGR03364 HpnW_proposed FAD de 98.1 4.6E-06 1E-10 77.3 5.2 34 31-64 1-34 (365)
128 PRK12837 3-ketosteroid-delta-1 98.1 5E-06 1.1E-10 81.1 5.6 40 30-70 7-46 (513)
129 TIGR03329 Phn_aa_oxid putative 98.1 5.8E-06 1.3E-10 79.5 5.9 36 29-64 23-60 (460)
130 PRK12809 putative oxidoreducta 98.1 7E-06 1.5E-10 82.1 6.6 41 30-70 310-350 (639)
131 PRK11749 dihydropyrimidine deh 98.1 6.4E-06 1.4E-10 79.1 6.1 42 29-70 139-180 (457)
132 PRK07588 hypothetical protein; 98.1 4.5E-06 9.9E-11 78.2 4.9 35 31-65 1-35 (391)
133 PRK07538 hypothetical protein; 98.1 4.5E-06 9.9E-11 78.9 5.0 35 31-65 1-35 (413)
134 COG0493 GltD NADPH-dependent g 98.1 5.9E-06 1.3E-10 79.1 5.7 42 30-71 123-164 (457)
135 PRK12810 gltD glutamate syntha 98.1 6E-06 1.3E-10 79.6 5.8 42 29-70 142-183 (471)
136 PRK12842 putative succinate de 98.0 5.6E-06 1.2E-10 81.8 5.6 42 30-71 9-50 (574)
137 KOG2404 Fumarate reductase, fl 98.0 4.6E-06 1E-10 75.1 4.4 170 31-261 10-185 (477)
138 PRK12814 putative NADPH-depend 98.0 7.1E-06 1.5E-10 82.2 6.2 42 29-70 192-233 (652)
139 TIGR01984 UbiH 2-polyprenyl-6- 98.0 4.4E-06 9.6E-11 77.8 4.5 34 32-65 1-35 (382)
140 PRK08850 2-octaprenyl-6-methox 98.0 5.4E-06 1.2E-10 78.2 5.1 34 29-62 3-36 (405)
141 PRK13512 coenzyme A disulfide 98.0 0.00012 2.6E-09 69.9 14.4 37 30-66 148-184 (438)
142 PTZ00058 glutathione reductase 98.0 7.4E-06 1.6E-10 80.6 6.2 41 29-70 47-87 (561)
143 PTZ00306 NADH-dependent fumara 98.0 7.1E-06 1.5E-10 87.1 6.5 42 29-70 408-449 (1167)
144 PLN00128 Succinate dehydrogena 98.0 8.8E-06 1.9E-10 81.2 6.7 40 30-69 50-89 (635)
145 PRK06185 hypothetical protein; 98.0 5.7E-06 1.2E-10 77.9 5.1 36 29-64 5-40 (407)
146 PRK09564 coenzyme A disulfide 98.0 6E-05 1.3E-09 71.9 12.2 36 30-65 149-184 (444)
147 PRK14694 putative mercuric red 98.0 6.6E-06 1.4E-10 79.2 5.5 41 29-70 5-45 (468)
148 PRK08020 ubiF 2-octaprenyl-3-m 98.0 5.1E-06 1.1E-10 77.7 4.7 34 30-63 5-38 (391)
149 COG0654 UbiH 2-polyprenyl-6-me 98.0 5.7E-06 1.2E-10 77.7 5.0 33 30-62 2-34 (387)
150 PRK11101 glpA sn-glycerol-3-ph 98.0 6.8E-06 1.5E-10 80.7 5.6 38 30-67 6-43 (546)
151 PRK08244 hypothetical protein; 98.0 6.1E-06 1.3E-10 79.9 5.3 36 30-65 2-37 (493)
152 PRK06617 2-octaprenyl-6-methox 98.0 5.6E-06 1.2E-10 77.3 4.8 34 30-63 1-34 (374)
153 PRK14727 putative mercuric red 98.0 7.2E-06 1.6E-10 79.3 5.6 43 29-71 15-57 (479)
154 PRK14989 nitrite reductase sub 98.0 0.0001 2.3E-09 75.8 14.3 36 30-65 145-180 (847)
155 PRK06475 salicylate hydroxylas 98.0 6.4E-06 1.4E-10 77.6 5.2 36 30-65 2-37 (400)
156 PRK08243 4-hydroxybenzoate 3-m 98.0 6.1E-06 1.3E-10 77.5 5.0 35 30-64 2-36 (392)
157 PRK08641 sdhA succinate dehydr 98.0 6.6E-06 1.4E-10 81.5 5.3 40 30-69 3-42 (589)
158 PLN02463 lycopene beta cyclase 98.0 1.3E-05 2.8E-10 76.8 7.1 37 28-64 26-62 (447)
159 TIGR01372 soxA sarcosine oxida 98.0 7.7E-06 1.7E-10 85.6 5.9 42 30-71 163-204 (985)
160 PRK07333 2-octaprenyl-6-methox 98.0 5.9E-06 1.3E-10 77.5 4.6 35 30-64 1-37 (403)
161 PRK07190 hypothetical protein; 98.0 7.1E-06 1.5E-10 79.5 5.3 36 30-65 5-40 (487)
162 TIGR02374 nitri_red_nirB nitri 98.0 0.00011 2.4E-09 75.2 14.2 36 30-65 140-175 (785)
163 COG1249 Lpd Pyruvate/2-oxoglut 98.0 0.00019 4.1E-09 68.8 14.8 38 30-67 173-210 (454)
164 PRK11445 putative oxidoreducta 98.0 6.4E-06 1.4E-10 76.3 4.7 35 30-65 1-35 (351)
165 PRK00711 D-amino acid dehydrog 98.0 6.6E-06 1.4E-10 77.6 4.9 37 31-67 1-37 (416)
166 PLN02985 squalene monooxygenas 98.0 7.9E-06 1.7E-10 79.7 5.5 39 26-64 39-77 (514)
167 PRK06567 putative bifunctional 98.0 1.1E-05 2.3E-10 82.9 6.5 40 29-68 382-421 (1028)
168 TIGR03385 CoA_CoA_reduc CoA-di 98.0 0.00016 3.5E-09 68.7 14.2 36 30-65 137-172 (427)
169 PRK06126 hypothetical protein; 98.0 8.3E-06 1.8E-10 80.0 5.4 36 29-64 6-41 (545)
170 PRK06327 dihydrolipoamide dehy 98.0 8.7E-06 1.9E-10 78.6 5.3 41 30-70 4-50 (475)
171 PRK13748 putative mercuric red 98.0 8.1E-06 1.8E-10 80.3 5.1 40 30-70 98-137 (561)
172 PRK12835 3-ketosteroid-delta-1 98.0 1E-05 2.2E-10 80.0 5.9 40 30-69 11-50 (584)
173 TIGR03219 salicylate_mono sali 98.0 8.7E-06 1.9E-10 77.0 5.0 36 31-66 1-37 (414)
174 PRK12845 3-ketosteroid-delta-1 98.0 1.3E-05 2.8E-10 79.0 6.3 41 29-70 15-55 (564)
175 PTZ00052 thioredoxin reductase 98.0 9.2E-06 2E-10 78.9 5.1 41 30-70 5-53 (499)
176 PRK08132 FAD-dependent oxidore 98.0 1.7E-05 3.7E-10 77.9 7.0 37 29-65 22-58 (547)
177 TIGR01812 sdhA_frdA_Gneg succi 97.9 9.4E-06 2E-10 80.0 5.0 38 32-69 1-38 (566)
178 PRK01747 mnmC bifunctional tRN 97.9 9.7E-06 2.1E-10 81.4 5.1 38 30-67 260-297 (662)
179 PRK06834 hypothetical protein; 97.9 1.2E-05 2.5E-10 78.0 5.3 35 30-64 3-37 (488)
180 PRK07804 L-aspartate oxidase; 97.9 1.1E-05 2.3E-10 79.2 5.1 40 30-69 16-55 (541)
181 PRK08401 L-aspartate oxidase; 97.9 1.2E-05 2.5E-10 77.6 5.1 35 30-64 1-35 (466)
182 PRK07803 sdhA succinate dehydr 97.9 1.1E-05 2.3E-10 80.6 4.9 39 30-68 8-46 (626)
183 PRK12771 putative glutamate sy 97.9 1.8E-05 3.9E-10 78.0 6.5 43 28-70 135-177 (564)
184 PRK08958 sdhA succinate dehydr 97.9 1.4E-05 3.1E-10 79.1 5.7 39 30-68 7-45 (588)
185 PRK07057 sdhA succinate dehydr 97.9 1.2E-05 2.6E-10 79.7 5.2 41 30-70 12-52 (591)
186 PRK06183 mhpA 3-(3-hydroxyphen 97.9 1.6E-05 3.6E-10 77.8 6.1 39 28-66 8-46 (538)
187 PRK12844 3-ketosteroid-delta-1 97.9 1.4E-05 3.1E-10 78.7 5.5 41 30-70 6-46 (557)
188 PLN02464 glycerol-3-phosphate 97.9 1.4E-05 2.9E-10 79.8 5.4 38 30-67 71-108 (627)
189 PTZ00139 Succinate dehydrogena 97.9 1.4E-05 3E-10 79.7 5.4 41 30-70 29-69 (617)
190 TIGR01989 COQ6 Ubiquinone bios 97.9 1.1E-05 2.5E-10 76.9 4.6 33 31-63 1-37 (437)
191 PRK05335 tRNA (uracil-5-)-meth 97.9 1.5E-05 3.1E-10 75.5 5.2 36 30-65 2-37 (436)
192 TIGR01789 lycopene_cycl lycope 97.9 1.3E-05 2.9E-10 74.9 4.9 37 32-68 1-39 (370)
193 PRK06452 sdhA succinate dehydr 97.9 1.3E-05 2.9E-10 79.0 5.1 41 30-70 5-45 (566)
194 TIGR03467 HpnE squalene-associ 97.9 1.8E-05 4E-10 74.2 5.9 58 44-101 1-59 (419)
195 PRK06370 mercuric reductase; V 97.9 0.00024 5.2E-09 68.3 13.7 37 30-66 171-207 (463)
196 PRK12839 hypothetical protein; 97.9 1.8E-05 3.8E-10 78.2 5.9 41 30-70 8-48 (572)
197 PLN02927 antheraxanthin epoxid 97.9 1.4E-05 3E-10 79.8 5.2 36 28-63 79-114 (668)
198 TIGR01317 GOGAT_sm_gam glutama 97.9 2.2E-05 4.7E-10 76.1 6.4 41 30-70 143-183 (485)
199 PRK07843 3-ketosteroid-delta-1 97.9 1.6E-05 3.4E-10 78.3 5.5 41 30-70 7-47 (557)
200 PLN02507 glutathione reductase 97.9 1.6E-05 3.4E-10 77.4 5.3 41 30-70 25-74 (499)
201 KOG2415 Electron transfer flav 97.9 1.3E-05 2.7E-10 74.6 4.3 42 30-71 76-123 (621)
202 PRK05192 tRNA uridine 5-carbox 97.9 1.5E-05 3.2E-10 78.6 5.1 39 29-67 3-42 (618)
203 TIGR03140 AhpF alkyl hydropero 97.9 1.7E-05 3.7E-10 77.4 5.5 41 28-70 210-250 (515)
204 PRK07573 sdhA succinate dehydr 97.9 1.5E-05 3.2E-10 79.7 5.1 38 30-67 35-72 (640)
205 PF07992 Pyr_redox_2: Pyridine 97.9 1.9E-05 4.1E-10 66.6 5.0 36 32-67 1-36 (201)
206 PRK06069 sdhA succinate dehydr 97.9 1.6E-05 3.4E-10 78.7 5.1 41 30-70 5-48 (577)
207 PRK15317 alkyl hydroperoxide r 97.9 2E-05 4.4E-10 76.9 5.8 40 29-70 210-249 (517)
208 PRK12770 putative glutamate sy 97.9 2.5E-05 5.4E-10 72.4 6.1 41 30-70 18-58 (352)
209 PRK05945 sdhA succinate dehydr 97.9 1.5E-05 3.3E-10 78.7 4.9 40 30-69 3-44 (575)
210 PLN02507 glutathione reductase 97.9 0.00028 6.1E-09 68.6 13.5 36 30-65 203-238 (499)
211 COG1249 Lpd Pyruvate/2-oxoglut 97.9 2.2E-05 4.9E-10 75.1 5.7 44 28-71 2-45 (454)
212 TIGR01320 mal_quin_oxido malat 97.9 1.6E-05 3.4E-10 77.0 4.7 36 31-66 1-38 (483)
213 TIGR02053 MerA mercuric reduct 97.9 0.00016 3.5E-09 69.5 11.6 37 30-66 166-202 (463)
214 TIGR01421 gluta_reduc_1 glutat 97.8 0.00015 3.2E-09 69.6 11.1 37 30-66 166-202 (450)
215 PTZ00367 squalene epoxidase; P 97.8 2.1E-05 4.5E-10 77.5 5.4 34 30-63 33-66 (567)
216 PLN02697 lycopene epsilon cycl 97.8 4E-05 8.8E-10 74.8 7.2 37 29-65 107-143 (529)
217 PRK06175 L-aspartate oxidase; 97.8 1.9E-05 4E-10 75.5 4.7 39 30-69 4-42 (433)
218 TIGR03143 AhpF_homolog putativ 97.8 0.00043 9.3E-09 68.2 14.2 35 30-64 143-177 (555)
219 PRK07395 L-aspartate oxidase; 97.8 2.3E-05 5.1E-10 77.0 5.3 41 28-69 7-47 (553)
220 PRK12843 putative FAD-binding 97.8 3.7E-05 8E-10 76.1 6.7 42 30-71 16-57 (578)
221 PRK05249 soluble pyridine nucl 97.8 0.0004 8.7E-09 66.6 13.7 37 30-66 175-211 (461)
222 PRK09078 sdhA succinate dehydr 97.8 2.1E-05 4.6E-10 78.1 5.0 39 30-68 12-50 (598)
223 PRK06134 putative FAD-binding 97.8 3.2E-05 6.9E-10 76.6 6.2 42 29-70 11-52 (581)
224 TIGR00551 nadB L-aspartate oxi 97.8 2.2E-05 4.8E-10 76.0 5.0 39 30-69 2-40 (488)
225 PF05834 Lycopene_cycl: Lycope 97.8 2E-05 4.4E-10 73.7 4.5 34 32-65 1-36 (374)
226 PRK06912 acoL dihydrolipoamide 97.8 0.00065 1.4E-08 65.3 14.9 36 30-65 170-205 (458)
227 TIGR01423 trypano_reduc trypan 97.8 2.6E-05 5.6E-10 75.6 5.1 42 29-70 2-52 (486)
228 PLN02815 L-aspartate oxidase 97.8 2.6E-05 5.7E-10 77.3 5.3 39 30-69 29-67 (594)
229 PF00070 Pyr_redox: Pyridine n 97.8 4.4E-05 9.5E-10 55.2 5.1 35 32-66 1-35 (80)
230 KOG2614 Kynurenine 3-monooxyge 97.8 2.7E-05 5.9E-10 72.3 4.9 36 30-65 2-37 (420)
231 PRK08294 phenol 2-monooxygenas 97.8 4.6E-05 1E-09 76.2 6.8 36 29-64 31-67 (634)
232 PRK05257 malate:quinone oxidor 97.8 2.5E-05 5.5E-10 75.8 4.8 39 29-67 4-44 (494)
233 PRK08626 fumarate reductase fl 97.8 2.6E-05 5.6E-10 78.2 5.0 39 30-68 5-43 (657)
234 TIGR01350 lipoamide_DH dihydro 97.8 0.00023 5E-09 68.2 11.3 36 30-65 170-205 (461)
235 PRK07818 dihydrolipoamide dehy 97.8 0.00064 1.4E-08 65.5 14.3 36 30-65 172-207 (466)
236 TIGR00137 gid_trmFO tRNA:m(5)U 97.8 3E-05 6.4E-10 73.6 5.0 36 31-66 1-36 (433)
237 PRK06854 adenylylsulfate reduc 97.8 2.6E-05 5.7E-10 77.6 4.8 38 30-67 11-50 (608)
238 PRK08071 L-aspartate oxidase; 97.8 2.8E-05 6.1E-10 75.8 5.0 39 30-69 3-41 (510)
239 PRK09897 hypothetical protein; 97.8 3.9E-05 8.4E-10 75.0 5.8 40 30-69 1-42 (534)
240 PRK06292 dihydrolipoamide dehy 97.8 0.00062 1.3E-08 65.3 14.0 37 30-66 169-205 (460)
241 PRK06467 dihydrolipoamide dehy 97.8 0.00063 1.4E-08 65.7 14.0 36 31-66 175-210 (471)
242 PRK08255 salicylyl-CoA 5-hydro 97.7 3.1E-05 6.8E-10 79.0 5.1 34 31-64 1-36 (765)
243 PRK06416 dihydrolipoamide dehy 97.7 0.00049 1.1E-08 66.1 13.1 36 30-65 172-207 (462)
244 COG0579 Predicted dehydrogenas 97.7 3.4E-05 7.3E-10 73.1 4.8 42 29-70 2-45 (429)
245 PF00732 GMC_oxred_N: GMC oxid 97.7 2.7E-05 5.8E-10 70.1 4.0 36 31-66 1-37 (296)
246 PRK07846 mycothione reductase; 97.7 0.00061 1.3E-08 65.4 13.5 37 30-66 166-202 (451)
247 PRK06116 glutathione reductase 97.7 0.00034 7.4E-09 67.0 11.7 36 30-65 167-202 (450)
248 TIGR01176 fum_red_Fp fumarate 97.7 3.1E-05 6.8E-10 76.6 4.7 41 30-70 3-45 (580)
249 PRK06263 sdhA succinate dehydr 97.7 3.3E-05 7.3E-10 75.8 4.8 39 30-69 7-46 (543)
250 PRK07845 flavoprotein disulfid 97.7 0.00029 6.2E-09 67.9 11.1 37 31-67 178-214 (466)
251 PRK05976 dihydrolipoamide dehy 97.7 0.00098 2.1E-08 64.3 14.8 36 30-65 180-215 (472)
252 PLN02546 glutathione reductase 97.7 4E-05 8.7E-10 75.4 5.2 32 30-61 79-110 (558)
253 PRK09231 fumarate reductase fl 97.7 3.1E-05 6.8E-10 76.6 4.4 41 30-70 4-46 (582)
254 PRK08275 putative oxidoreducta 97.7 3.7E-05 8E-10 75.7 4.8 37 30-66 9-47 (554)
255 PRK13984 putative oxidoreducta 97.7 5.5E-05 1.2E-09 75.2 6.0 42 29-70 282-323 (604)
256 KOG0399 Glutamate synthase [Am 97.7 4.2E-05 9E-10 78.3 5.1 41 30-70 1785-1825(2142)
257 PTZ00153 lipoamide dehydrogena 97.7 8.4E-05 1.8E-09 74.4 7.1 41 30-70 116-157 (659)
258 PRK06327 dihydrolipoamide dehy 97.7 0.00075 1.6E-08 65.2 13.4 36 30-65 183-218 (475)
259 PRK06912 acoL dihydrolipoamide 97.7 5E-05 1.1E-09 72.9 5.1 38 32-70 2-39 (458)
260 PRK07845 flavoprotein disulfid 97.7 5.3E-05 1.1E-09 73.0 5.2 40 30-70 1-40 (466)
261 PTZ00383 malate:quinone oxidor 97.7 4.9E-05 1.1E-09 73.7 4.9 37 30-66 45-83 (497)
262 TIGR01811 sdhA_Bsu succinate d 97.7 3.9E-05 8.6E-10 76.2 4.3 34 33-66 1-34 (603)
263 TIGR03140 AhpF alkyl hydropero 97.7 0.00083 1.8E-08 65.6 13.5 36 30-65 352-387 (515)
264 TIGR03452 mycothione_red mycot 97.7 0.00079 1.7E-08 64.6 12.9 36 30-65 169-204 (452)
265 PF01134 GIDA: Glucose inhibit 97.6 6.2E-05 1.3E-09 70.5 4.9 37 32-68 1-38 (392)
266 PRK07251 pyridine nucleotide-d 97.6 0.00079 1.7E-08 64.2 12.6 37 30-66 157-193 (438)
267 PTZ00318 NADH dehydrogenase-li 97.6 0.0029 6.2E-08 60.2 16.1 38 213-250 306-346 (424)
268 PRK13339 malate:quinone oxidor 97.6 7.6E-05 1.6E-09 72.4 5.3 39 29-67 5-45 (497)
269 PRK09077 L-aspartate oxidase; 97.6 6.7E-05 1.4E-09 73.6 5.0 39 30-69 8-46 (536)
270 COG0578 GlpA Glycerol-3-phosph 97.6 0.00011 2.5E-09 71.0 6.4 41 29-69 11-51 (532)
271 PRK06996 hypothetical protein; 97.6 6.8E-05 1.5E-09 70.6 4.8 35 30-64 11-49 (398)
272 TIGR01423 trypano_reduc trypan 97.6 0.001 2.2E-08 64.5 13.1 37 30-66 187-226 (486)
273 KOG2820 FAD-dependent oxidored 97.6 4.2E-05 9.2E-10 69.4 2.9 43 28-70 5-47 (399)
274 TIGR02061 aprA adenosine phosp 97.6 7.1E-05 1.5E-09 74.4 4.8 34 32-65 1-38 (614)
275 PRK14727 putative mercuric red 97.6 0.0018 4E-08 62.6 14.3 32 31-62 189-220 (479)
276 TIGR01424 gluta_reduc_2 glutat 97.6 0.00057 1.2E-08 65.5 10.6 36 30-65 166-201 (446)
277 COG1053 SdhA Succinate dehydro 97.6 9.3E-05 2E-09 72.8 5.2 42 29-70 5-46 (562)
278 PRK08205 sdhA succinate dehydr 97.6 8.3E-05 1.8E-09 73.7 4.9 38 30-68 5-42 (583)
279 TIGR01438 TGR thioredoxin and 97.5 9.9E-05 2.2E-09 71.5 5.2 41 30-70 2-50 (484)
280 TIGR02462 pyranose_ox pyranose 97.5 0.0001 2.2E-09 72.1 5.0 38 31-68 1-38 (544)
281 PRK13748 putative mercuric red 97.5 0.0018 3.9E-08 63.7 13.8 33 30-62 270-302 (561)
282 PTZ00058 glutathione reductase 97.5 0.0032 6.8E-08 62.2 15.1 37 30-66 237-273 (561)
283 PRK05329 anaerobic glycerol-3- 97.5 0.00012 2.7E-09 69.5 5.1 34 30-63 2-35 (422)
284 PRK06115 dihydrolipoamide dehy 97.5 0.0037 8E-08 60.3 15.3 37 30-66 174-210 (466)
285 PLN02546 glutathione reductase 97.5 0.00083 1.8E-08 66.2 10.8 37 30-66 252-288 (558)
286 PRK08010 pyridine nucleotide-d 97.5 0.0018 4E-08 61.8 12.9 37 30-66 158-194 (441)
287 PRK14694 putative mercuric red 97.5 0.003 6.5E-08 60.9 14.0 33 30-62 178-210 (468)
288 KOG1335 Dihydrolipoamide dehyd 97.4 0.00014 3E-09 67.2 4.3 42 29-70 38-79 (506)
289 PRK02106 choline dehydrogenase 97.4 0.00017 3.8E-09 71.0 5.2 35 30-64 5-40 (560)
290 PF06100 Strep_67kDa_ant: Stre 97.4 0.00026 5.7E-09 67.6 6.1 70 30-100 2-76 (500)
291 TIGR01292 TRX_reduct thioredox 97.4 0.005 1.1E-07 54.9 14.2 35 30-64 141-175 (300)
292 KOG1298 Squalene monooxygenase 97.4 0.00016 3.6E-09 66.7 4.4 36 28-63 43-78 (509)
293 TIGR01316 gltA glutamate synth 97.4 0.0059 1.3E-07 58.6 15.4 35 30-64 272-306 (449)
294 PRK13800 putative oxidoreducta 97.4 0.00015 3.3E-09 75.3 4.7 35 30-64 13-47 (897)
295 KOG4254 Phytoene desaturase [C 97.4 0.00019 4.2E-09 67.4 4.9 45 28-72 12-56 (561)
296 COG3573 Predicted oxidoreducta 97.4 0.0002 4.3E-09 65.2 4.7 41 30-70 5-47 (552)
297 PRK07512 L-aspartate oxidase; 97.4 0.00016 3.5E-09 70.6 4.4 37 30-68 9-46 (513)
298 PRK10262 thioredoxin reductase 97.3 0.0031 6.8E-08 57.5 12.0 35 30-64 146-180 (321)
299 PF13454 NAD_binding_9: FAD-NA 97.3 0.0003 6.5E-09 57.6 4.6 36 34-70 1-42 (156)
300 COG1252 Ndh NADH dehydrogenase 97.3 0.0054 1.2E-07 57.9 13.5 38 213-250 289-330 (405)
301 COG3075 GlpB Anaerobic glycero 97.3 0.00028 6E-09 64.0 4.5 33 30-62 2-34 (421)
302 PTZ00052 thioredoxin reductase 97.3 0.0045 9.7E-08 60.3 13.2 32 31-62 183-214 (499)
303 PRK13512 coenzyme A disulfide 97.3 0.00029 6.3E-09 67.3 4.9 37 30-66 1-39 (438)
304 PRK15317 alkyl hydroperoxide r 97.3 0.006 1.3E-07 59.6 14.1 36 30-65 351-386 (517)
305 PF01593 Amino_oxidase: Flavin 97.3 6.8E-05 1.5E-09 69.6 0.4 92 157-248 351-450 (450)
306 TIGR01372 soxA sarcosine oxida 97.3 0.0054 1.2E-07 64.5 14.4 36 30-65 317-353 (985)
307 PRK09754 phenylpropionate diox 97.3 0.00038 8.2E-09 65.6 5.2 36 30-65 3-40 (396)
308 TIGR02485 CobZ_N-term precorri 97.3 0.00021 4.6E-09 68.1 3.5 34 35-68 1-36 (432)
309 TIGR01438 TGR thioredoxin and 97.2 0.0064 1.4E-07 59.0 13.7 31 31-61 181-211 (484)
310 PRK09564 coenzyme A disulfide 97.2 0.00038 8.3E-09 66.4 4.6 36 31-66 1-38 (444)
311 KOG1800 Ferredoxin/adrenodoxin 97.2 0.00056 1.2E-08 63.1 5.0 41 30-70 20-62 (468)
312 COG0446 HcaD Uncharacterized N 97.2 0.00049 1.1E-08 64.1 4.8 41 30-70 136-176 (415)
313 PRK12831 putative oxidoreducta 97.1 0.017 3.8E-07 55.7 15.4 34 30-63 281-314 (464)
314 TIGR00136 gidA glucose-inhibit 97.1 0.00061 1.3E-08 67.2 5.4 37 31-67 1-37 (617)
315 PRK11749 dihydropyrimidine deh 97.1 0.015 3.3E-07 55.8 14.9 35 30-64 273-308 (457)
316 PLN02268 probable polyamine ox 97.1 0.00039 8.5E-09 66.1 3.7 91 159-250 337-433 (435)
317 PRK12770 putative glutamate sy 97.1 0.018 3.9E-07 53.3 14.6 35 30-64 172-207 (352)
318 TIGR01810 betA choline dehydro 97.1 0.00044 9.5E-09 67.8 4.0 33 32-64 1-34 (532)
319 TIGR03378 glycerol3P_GlpB glyc 97.1 0.00066 1.4E-08 64.3 4.8 33 31-63 1-33 (419)
320 PTZ00318 NADH dehydrogenase-li 97.1 0.00073 1.6E-08 64.3 5.2 37 28-64 8-44 (424)
321 COG2303 BetA Choline dehydroge 97.0 0.00066 1.4E-08 66.7 4.7 36 28-63 5-40 (542)
322 TIGR03452 mycothione_red mycot 97.0 0.00074 1.6E-08 64.9 4.9 38 30-70 2-39 (452)
323 PRK07846 mycothione reductase; 97.0 0.00071 1.5E-08 65.0 4.7 37 31-70 2-38 (451)
324 COG3634 AhpF Alkyl hydroperoxi 97.0 0.0068 1.5E-07 55.6 10.2 35 30-64 354-388 (520)
325 PF04820 Trp_halogenase: Trypt 97.0 0.00064 1.4E-08 65.4 3.9 33 32-64 1-36 (454)
326 KOG1335 Dihydrolipoamide dehyd 96.9 0.0021 4.6E-08 59.5 6.6 39 30-68 211-249 (506)
327 PTZ00153 lipoamide dehydrogena 96.9 0.013 2.8E-07 58.9 12.8 38 30-67 312-349 (659)
328 PRK12778 putative bifunctional 96.9 0.02 4.4E-07 58.6 14.3 35 30-64 570-605 (752)
329 COG4529 Uncharacterized protei 96.9 0.0019 4.2E-08 61.4 6.3 71 30-100 1-78 (474)
330 KOG2852 Possible oxidoreductas 96.9 0.00045 9.8E-09 61.6 1.9 40 29-68 9-54 (380)
331 PRK09853 putative selenate red 96.9 0.025 5.4E-07 59.2 14.6 40 211-252 803-842 (1019)
332 PRK12810 gltD glutamate syntha 96.8 0.034 7.4E-07 53.7 14.5 36 30-65 281-317 (471)
333 PLN02676 polyamine oxidase 96.8 0.0013 2.8E-08 63.8 4.4 91 160-251 376-473 (487)
334 COG1206 Gid NAD(FAD)-utilizing 96.8 0.0014 3E-08 59.6 3.8 37 30-66 3-39 (439)
335 PLN02785 Protein HOTHEAD 96.7 0.002 4.4E-08 63.9 5.2 34 30-64 55-88 (587)
336 PRK12779 putative bifunctional 96.6 0.046 1E-06 57.2 14.4 34 30-63 447-480 (944)
337 TIGR03169 Nterm_to_SelD pyridi 96.5 0.16 3.4E-06 47.0 16.2 37 214-250 270-309 (364)
338 TIGR03315 Se_ygfK putative sel 96.5 0.08 1.7E-06 55.6 15.4 39 211-251 801-839 (1012)
339 KOG4716 Thioredoxin reductase 96.5 0.0025 5.5E-08 58.2 3.8 53 28-83 17-70 (503)
340 PLN02529 lysine-specific histo 96.5 0.0021 4.6E-08 65.1 3.5 39 215-253 562-600 (738)
341 COG4716 Myosin-crossreactive a 96.5 0.0015 3.3E-08 60.4 2.2 43 28-70 20-66 (587)
342 COG0492 TrxB Thioredoxin reduc 96.5 0.12 2.6E-06 47.2 14.5 35 30-64 143-177 (305)
343 PLN03000 amine oxidase 96.5 0.0021 4.5E-08 65.9 3.3 96 159-255 520-627 (881)
344 PF01210 NAD_Gly3P_dh_N: NAD-d 96.5 0.0036 7.7E-08 51.3 4.2 33 32-64 1-33 (157)
345 PRK04965 NADH:flavorubredoxin 96.4 0.0046 1E-07 57.7 5.1 35 30-64 2-38 (377)
346 KOG2853 Possible oxidoreductas 96.4 0.0029 6.3E-08 57.9 3.4 36 30-65 86-125 (509)
347 PLN02976 amine oxidase 96.3 0.0033 7.2E-08 67.2 4.1 91 160-251 1087-1186(1713)
348 KOG2665 Predicted FAD-dependen 96.3 0.003 6.5E-08 57.2 3.2 42 26-67 44-87 (453)
349 TIGR03169 Nterm_to_SelD pyridi 96.3 0.004 8.7E-08 57.7 4.3 33 32-64 1-36 (364)
350 PRK12814 putative NADPH-depend 96.3 0.087 1.9E-06 53.1 13.7 34 30-63 323-357 (652)
351 COG1252 Ndh NADH dehydrogenase 96.3 0.006 1.3E-07 57.5 5.0 36 29-64 2-39 (405)
352 KOG2960 Protein involved in th 96.3 0.0011 2.3E-08 56.8 -0.1 39 31-69 77-117 (328)
353 PLN02568 polyamine oxidase 96.2 0.0056 1.2E-07 60.2 4.5 40 213-252 497-536 (539)
354 PRK12769 putative oxidoreducta 96.1 0.15 3.2E-06 51.4 14.5 35 30-64 468-503 (654)
355 PRK01438 murD UDP-N-acetylmura 96.1 0.0081 1.8E-07 58.0 5.0 35 30-64 16-50 (480)
356 COG0029 NadB Aspartate oxidase 96.1 0.005 1.1E-07 58.8 3.4 33 32-65 9-41 (518)
357 PRK14989 nitrite reductase sub 96.1 0.0084 1.8E-07 62.0 5.2 37 30-66 3-43 (847)
358 PF02737 3HCDH_N: 3-hydroxyacy 96.0 0.0085 1.9E-07 50.3 4.4 33 32-64 1-33 (180)
359 KOG0042 Glycerol-3-phosphate d 96.0 0.004 8.8E-08 60.0 2.6 40 29-68 66-105 (680)
360 PRK02705 murD UDP-N-acetylmura 96.0 0.0077 1.7E-07 57.8 4.7 34 32-65 2-35 (459)
361 COG0445 GidA Flavin-dependent 95.9 0.0085 1.9E-07 58.0 4.3 33 30-62 4-36 (621)
362 PRK06129 3-hydroxyacyl-CoA deh 95.9 0.0099 2.2E-07 54.1 4.6 35 30-64 2-36 (308)
363 KOG0405 Pyridine nucleotide-di 95.9 0.021 4.6E-07 52.5 6.2 43 28-70 18-60 (478)
364 PF03721 UDPG_MGDP_dh_N: UDP-g 95.7 0.0086 1.9E-07 50.6 3.1 35 31-65 1-35 (185)
365 KOG2844 Dimethylglycine dehydr 95.7 0.078 1.7E-06 52.6 9.9 32 30-61 39-70 (856)
366 KOG2495 NADH-dehydrogenase (ub 95.7 0.16 3.4E-06 48.0 11.4 35 30-64 218-266 (491)
367 PRK07530 3-hydroxybutyryl-CoA 95.6 0.018 3.8E-07 52.0 4.9 36 29-64 3-38 (292)
368 PRK07066 3-hydroxybutyryl-CoA 95.6 0.02 4.4E-07 52.5 5.3 35 30-64 7-41 (321)
369 PRK12775 putative trifunctiona 95.6 0.49 1.1E-05 50.1 16.1 38 211-250 716-753 (1006)
370 PF00996 GDI: GDP dissociation 95.6 0.017 3.7E-07 55.1 4.9 44 29-72 3-46 (438)
371 PF02558 ApbA: Ketopantoate re 95.6 0.017 3.7E-07 46.5 4.2 31 33-63 1-31 (151)
372 PLN02328 lysine-specific histo 95.5 0.014 3E-07 59.8 4.0 91 160-251 577-679 (808)
373 PRK07819 3-hydroxybutyryl-CoA 95.4 0.022 4.7E-07 51.4 4.7 36 30-65 5-40 (286)
374 PRK06249 2-dehydropantoate 2-r 95.4 0.026 5.6E-07 51.5 5.1 34 30-63 5-38 (313)
375 PRK08293 3-hydroxybutyryl-CoA 95.3 0.024 5.3E-07 51.0 4.8 35 30-64 3-37 (287)
376 PF13738 Pyr_redox_3: Pyridine 95.3 0.025 5.4E-07 47.6 4.4 35 30-64 167-201 (203)
377 COG0569 TrkA K+ transport syst 95.3 0.025 5.4E-07 49.3 4.4 35 31-65 1-35 (225)
378 PRK14106 murD UDP-N-acetylmura 95.2 0.028 6E-07 53.8 5.0 34 30-63 5-38 (450)
379 COG1251 NirB NAD(P)H-nitrite r 95.2 0.12 2.5E-06 51.9 9.2 35 31-65 146-180 (793)
380 KOG1238 Glucose dehydrogenase/ 95.1 0.033 7.1E-07 55.0 5.2 38 28-65 55-93 (623)
381 COG3634 AhpF Alkyl hydroperoxi 95.1 0.014 3E-07 53.7 2.4 41 30-72 211-251 (520)
382 PRK09260 3-hydroxybutyryl-CoA 95.1 0.029 6.3E-07 50.5 4.4 34 31-64 2-35 (288)
383 KOG2311 NAD/FAD-utilizing prot 95.0 0.028 6.1E-07 53.6 4.3 35 28-62 26-60 (679)
384 TIGR02374 nitri_red_nirB nitri 95.0 0.025 5.5E-07 58.1 4.3 34 33-66 1-37 (785)
385 PF01262 AlaDh_PNT_C: Alanine 95.0 0.038 8.2E-07 45.8 4.5 36 29-64 19-54 (168)
386 PRK05708 2-dehydropantoate 2-r 94.9 0.035 7.6E-07 50.5 4.7 34 30-63 2-35 (305)
387 PRK06035 3-hydroxyacyl-CoA deh 94.9 0.038 8.3E-07 49.8 4.8 36 30-65 3-38 (291)
388 PRK06522 2-dehydropantoate 2-r 94.9 0.037 8.1E-07 49.8 4.6 33 31-63 1-33 (304)
389 PRK08229 2-dehydropantoate 2-r 94.8 0.038 8.2E-07 50.8 4.4 35 30-64 2-36 (341)
390 KOG0404 Thioredoxin reductase 94.8 0.046 1E-06 47.4 4.5 43 30-72 8-54 (322)
391 PLN02545 3-hydroxybutyryl-CoA 94.7 0.048 1E-06 49.2 4.9 35 30-64 4-38 (295)
392 PRK11064 wecC UDP-N-acetyl-D-m 94.7 0.041 8.9E-07 52.4 4.6 35 30-64 3-37 (415)
393 PRK12921 2-dehydropantoate 2-r 94.6 0.047 1E-06 49.2 4.6 31 31-61 1-31 (305)
394 PRK05808 3-hydroxybutyryl-CoA 94.5 0.055 1.2E-06 48.5 4.7 35 30-64 3-37 (282)
395 PRK06130 3-hydroxybutyryl-CoA 94.4 0.061 1.3E-06 48.9 5.0 35 30-64 4-38 (311)
396 TIGR01470 cysG_Nterm siroheme 94.4 0.078 1.7E-06 45.5 5.2 35 30-64 9-43 (205)
397 PRK09424 pntA NAD(P) transhydr 94.4 0.055 1.2E-06 52.7 4.7 37 28-64 163-199 (509)
398 PF01488 Shikimate_DH: Shikima 94.4 0.089 1.9E-06 41.9 5.2 35 29-63 11-46 (135)
399 TIGR02730 carot_isom carotene 94.3 0.086 1.9E-06 51.1 6.0 41 209-251 452-492 (493)
400 PRK00094 gpsA NAD(P)H-dependen 94.3 0.059 1.3E-06 49.0 4.6 34 31-64 2-35 (325)
401 KOG1336 Monodehydroascorbate/f 94.2 0.34 7.4E-06 46.3 9.4 37 30-66 213-249 (478)
402 PF06039 Mqo: Malate:quinone o 94.2 0.065 1.4E-06 51.2 4.6 39 30-68 3-43 (488)
403 TIGR02734 crtI_fam phytoene de 94.2 0.094 2E-06 50.9 5.9 88 163-252 392-493 (502)
404 PRK14618 NAD(P)H-dependent gly 94.1 0.077 1.7E-06 48.6 4.9 35 30-64 4-38 (328)
405 KOG3855 Monooxygenase involved 94.0 0.1 2.3E-06 49.0 5.4 34 30-63 36-73 (481)
406 TIGR00518 alaDH alanine dehydr 93.9 0.082 1.8E-06 49.6 4.7 36 29-64 166-201 (370)
407 PRK14620 NAD(P)H-dependent gly 93.9 0.077 1.7E-06 48.6 4.4 32 32-63 2-33 (326)
408 PRK07531 bifunctional 3-hydrox 93.8 0.086 1.9E-06 51.3 4.9 35 30-64 4-38 (495)
409 PF03446 NAD_binding_2: NAD bi 93.8 0.083 1.8E-06 43.4 4.1 36 30-65 1-36 (163)
410 PF13241 NAD_binding_7: Putati 93.8 0.066 1.4E-06 40.6 3.3 35 29-63 6-40 (103)
411 COG1004 Ugd Predicted UDP-gluc 93.8 0.078 1.7E-06 49.6 4.2 34 31-64 1-34 (414)
412 KOG4405 GDP dissociation inhib 93.8 0.069 1.5E-06 50.1 3.8 44 30-73 8-51 (547)
413 cd00401 AdoHcyase S-adenosyl-L 93.8 0.096 2.1E-06 49.8 4.9 36 29-64 201-236 (413)
414 PF13434 K_oxygenase: L-lysine 93.8 0.047 1E-06 50.5 2.8 35 30-64 2-37 (341)
415 PRK14619 NAD(P)H-dependent gly 93.5 0.13 2.8E-06 46.9 5.2 35 30-64 4-38 (308)
416 PRK06718 precorrin-2 dehydroge 93.5 0.14 3E-06 43.8 5.1 34 29-62 9-42 (202)
417 PRK06719 precorrin-2 dehydroge 93.5 0.15 3.2E-06 41.8 5.0 32 29-60 12-43 (157)
418 TIGR03026 NDP-sugDHase nucleot 93.4 0.085 1.8E-06 50.1 3.9 33 32-64 2-34 (411)
419 PRK04148 hypothetical protein; 93.4 0.074 1.6E-06 42.5 3.0 34 30-64 17-50 (134)
420 PRK02472 murD UDP-N-acetylmura 93.3 0.12 2.6E-06 49.4 4.8 34 30-63 5-38 (447)
421 PRK03369 murD UDP-N-acetylmura 93.3 0.12 2.6E-06 50.3 4.9 34 30-63 12-45 (488)
422 TIGR01763 MalateDH_bact malate 93.3 0.13 2.9E-06 46.8 4.9 34 31-64 2-36 (305)
423 KOG3923 D-aspartate oxidase [A 93.3 0.079 1.7E-06 47.8 3.2 35 30-64 3-44 (342)
424 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.2 0.12 2.5E-06 50.6 4.6 36 30-65 5-40 (503)
425 PRK12771 putative glutamate sy 93.2 3.8 8.2E-05 40.5 15.3 38 211-250 405-442 (564)
426 cd05292 LDH_2 A subgroup of L- 93.2 0.13 2.9E-06 46.9 4.7 34 31-64 1-36 (308)
427 COG0771 MurD UDP-N-acetylmuram 93.1 0.11 2.3E-06 49.9 4.1 36 30-65 7-42 (448)
428 PRK08268 3-hydroxy-acyl-CoA de 93.1 0.15 3.2E-06 49.9 5.2 36 30-65 7-42 (507)
429 COG0686 Ald Alanine dehydrogen 93.1 0.088 1.9E-06 47.8 3.3 36 29-64 167-202 (371)
430 PRK04308 murD UDP-N-acetylmura 93.1 0.14 3.1E-06 49.0 5.0 35 30-64 5-39 (445)
431 PRK01710 murD UDP-N-acetylmura 93.0 0.14 3E-06 49.3 4.8 34 30-63 14-47 (458)
432 TIGR02733 desat_CrtD C-3',4' d 93.0 0.23 5E-06 48.1 6.4 85 164-250 395-491 (492)
433 PRK00141 murD UDP-N-acetylmura 93.0 0.17 3.6E-06 49.0 5.3 34 30-63 15-48 (473)
434 TIGR02354 thiF_fam2 thiamine b 92.9 0.18 3.9E-06 43.1 4.9 34 29-62 20-54 (200)
435 cd01075 NAD_bind_Leu_Phe_Val_D 92.9 0.19 4.1E-06 42.9 5.0 35 29-63 27-61 (200)
436 TIGR00561 pntA NAD(P) transhyd 92.8 0.19 4E-06 49.0 5.3 36 29-64 163-198 (511)
437 PRK08306 dipicolinate synthase 92.7 0.17 3.8E-06 45.8 4.8 35 30-64 152-186 (296)
438 KOG2304 3-hydroxyacyl-CoA dehy 92.6 0.14 3.1E-06 44.4 3.7 39 28-66 9-47 (298)
439 PRK04690 murD UDP-N-acetylmura 92.5 0.16 3.6E-06 49.0 4.6 34 30-63 8-41 (468)
440 PRK12549 shikimate 5-dehydroge 92.5 0.2 4.3E-06 45.2 4.8 34 30-63 127-161 (284)
441 COG1893 ApbA Ketopantoate redu 92.4 0.16 3.5E-06 46.3 4.1 34 31-64 1-34 (307)
442 PRK11730 fadB multifunctional 92.2 0.17 3.7E-06 51.6 4.4 35 30-64 313-347 (715)
443 TIGR00936 ahcY adenosylhomocys 92.2 0.22 4.7E-06 47.2 4.9 36 29-64 194-229 (406)
444 PRK07417 arogenate dehydrogena 92.2 0.18 3.8E-06 45.3 4.1 33 32-64 2-34 (279)
445 COG1748 LYS9 Saccharopine dehy 92.1 0.2 4.4E-06 47.1 4.5 33 30-62 1-34 (389)
446 TIGR02437 FadB fatty oxidation 92.1 0.18 3.9E-06 51.4 4.5 36 29-64 312-347 (714)
447 PRK00421 murC UDP-N-acetylmura 92.1 0.18 3.8E-06 48.6 4.2 35 30-64 7-42 (461)
448 PLN02353 probable UDP-glucose 92.0 0.2 4.4E-06 48.5 4.5 34 31-64 2-37 (473)
449 PRK11883 protoporphyrinogen ox 92.0 0.18 3.9E-06 47.8 4.2 85 159-249 362-450 (451)
450 PRK06223 malate dehydrogenase; 91.9 0.26 5.5E-06 44.8 4.9 35 30-64 2-37 (307)
451 KOG2755 Oxidoreductase [Genera 91.9 0.11 2.4E-06 46.1 2.3 34 32-65 1-36 (334)
452 TIGR02853 spore_dpaA dipicolin 91.9 0.23 5E-06 44.9 4.5 35 30-64 151-185 (287)
453 PRK12548 shikimate 5-dehydroge 91.9 0.29 6.2E-06 44.3 5.1 34 30-63 126-160 (289)
454 TIGR01915 npdG NADPH-dependent 91.8 0.26 5.6E-06 42.5 4.6 33 31-63 1-34 (219)
455 PF00670 AdoHcyase_NAD: S-aden 91.7 0.27 5.8E-06 40.6 4.3 35 30-64 23-57 (162)
456 PRK00683 murD UDP-N-acetylmura 91.7 0.24 5.1E-06 47.1 4.6 35 30-64 3-37 (418)
457 PF02254 TrkA_N: TrkA-N domain 91.6 0.31 6.8E-06 37.1 4.4 33 33-65 1-33 (116)
458 PRK05476 S-adenosyl-L-homocyst 91.6 0.29 6.3E-06 46.7 4.9 36 29-64 211-246 (425)
459 cd05311 NAD_bind_2_malic_enz N 91.5 0.31 6.7E-06 42.4 4.7 34 30-63 25-61 (226)
460 PRK15057 UDP-glucose 6-dehydro 91.5 0.23 5.1E-06 46.8 4.2 32 32-64 2-33 (388)
461 cd05291 HicDH_like L-2-hydroxy 91.5 0.29 6.3E-06 44.5 4.7 34 31-64 1-36 (306)
462 TIGR02441 fa_ox_alpha_mit fatt 91.4 0.29 6.3E-06 50.1 5.1 37 29-65 334-370 (737)
463 KOG1346 Programmed cell death 91.4 0.37 7.9E-06 45.6 5.2 34 216-249 478-518 (659)
464 PRK02006 murD UDP-N-acetylmura 91.3 0.27 5.8E-06 47.8 4.6 34 30-63 7-40 (498)
465 PRK07208 hypothetical protein; 91.2 0.18 3.8E-06 48.6 3.2 96 154-251 363-461 (479)
466 PTZ00082 L-lactate dehydrogena 91.2 0.35 7.6E-06 44.4 5.0 35 30-64 6-41 (321)
467 cd01080 NAD_bind_m-THF_DH_Cycl 91.2 0.39 8.5E-06 39.9 4.8 34 29-62 43-77 (168)
468 PRK01390 murD UDP-N-acetylmura 91.1 0.28 6.1E-06 47.1 4.4 34 30-63 9-42 (460)
469 PRK15461 NADH-dependent gamma- 91.1 0.32 6.9E-06 44.0 4.5 34 31-64 2-35 (296)
470 PRK01368 murD UDP-N-acetylmura 91.0 0.3 6.6E-06 47.0 4.6 33 30-63 6-38 (454)
471 TIGR00507 aroE shikimate 5-deh 91.0 0.35 7.5E-06 43.2 4.7 34 30-63 117-150 (270)
472 COG1250 FadB 3-hydroxyacyl-CoA 91.0 0.3 6.5E-06 44.5 4.2 35 30-64 3-37 (307)
473 TIGR01505 tartro_sem_red 2-hyd 91.0 0.28 6.1E-06 44.1 4.1 33 32-64 1-33 (291)
474 cd05191 NAD_bind_amino_acid_DH 90.9 0.55 1.2E-05 34.1 4.9 32 30-61 23-55 (86)
475 PF00899 ThiF: ThiF family; I 90.9 0.36 7.8E-06 38.2 4.2 35 30-64 2-37 (135)
476 TIGR02440 FadJ fatty oxidation 90.8 0.31 6.6E-06 49.6 4.5 36 29-64 303-339 (699)
477 cd01078 NAD_bind_H4MPT_DH NADP 90.8 0.46 9.9E-06 40.0 5.0 33 30-62 28-61 (194)
478 PRK14573 bifunctional D-alanyl 90.8 0.31 6.8E-06 50.3 4.7 35 29-63 3-38 (809)
479 PRK03803 murD UDP-N-acetylmura 90.8 0.31 6.7E-06 46.6 4.4 34 30-63 6-39 (448)
480 COG2072 TrkA Predicted flavopr 90.7 0.27 5.9E-06 47.2 3.9 36 30-65 175-210 (443)
481 cd01065 NAD_bind_Shikimate_DH 90.7 0.52 1.1E-05 37.8 5.0 35 30-64 19-54 (155)
482 cd05293 LDH_1 A subgroup of L- 90.5 0.47 1E-05 43.4 5.1 36 29-64 2-39 (312)
483 PRK09496 trkA potassium transp 90.5 0.35 7.6E-06 46.1 4.5 34 31-64 1-34 (453)
484 PLN02494 adenosylhomocysteinas 90.4 0.45 9.9E-06 45.8 5.0 35 30-64 254-288 (477)
485 PRK11154 fadJ multifunctional 90.3 0.45 9.7E-06 48.5 5.3 36 29-64 308-344 (708)
486 PRK11559 garR tartronate semia 90.3 0.43 9.3E-06 42.9 4.6 34 31-64 3-36 (296)
487 PRK12475 thiamine/molybdopteri 90.3 0.48 1E-05 43.9 5.0 35 29-63 23-58 (338)
488 PRK00066 ldh L-lactate dehydro 90.1 0.56 1.2E-05 43.0 5.2 35 30-64 6-42 (315)
489 PF00056 Ldh_1_N: lactate/mala 90.1 0.55 1.2E-05 37.7 4.6 34 31-64 1-37 (141)
490 PRK00258 aroE shikimate 5-dehy 90.0 0.51 1.1E-05 42.3 4.9 34 30-63 123-157 (278)
491 PRK15116 sulfur acceptor prote 90.0 0.5 1.1E-05 42.3 4.7 38 29-66 29-67 (268)
492 TIGR00872 gnd_rel 6-phosphoglu 89.8 0.43 9.3E-06 43.2 4.3 33 32-64 2-34 (298)
493 TIGR01317 GOGAT_sm_gam glutama 89.8 0.51 1.1E-05 45.8 5.0 38 29-66 282-320 (485)
494 TIGR00562 proto_IX_ox protopor 89.8 0.37 8.1E-06 46.0 4.1 87 159-250 369-459 (462)
495 TIGR01087 murD UDP-N-acetylmur 89.7 0.41 9E-06 45.5 4.3 33 32-64 1-33 (433)
496 PRK03806 murD UDP-N-acetylmura 89.7 0.48 1E-05 45.2 4.7 35 30-64 6-40 (438)
497 PRK08017 oxidoreductase; Provi 89.6 0.56 1.2E-05 40.7 4.7 33 31-63 3-36 (256)
498 PRK07502 cyclohexadienyl dehyd 89.6 0.5 1.1E-05 42.9 4.5 35 30-64 6-42 (307)
499 PLN02256 arogenate dehydrogena 89.6 0.58 1.3E-05 42.6 4.9 36 28-63 34-69 (304)
500 COG0240 GpsA Glycerol-3-phosph 89.5 0.49 1.1E-05 43.4 4.3 40 31-70 2-41 (329)
No 1
>PLN02487 zeta-carotene desaturase
Probab=99.95 E-value=3.7e-26 Score=222.33 Aligned_cols=121 Identities=72% Similarity=1.140 Sum_probs=112.5
Q ss_pred ceeEEEEEcCCCCCCCCChHHHHHHHcccccccCCCCccccccccceEeecccccccCCCCCCCCCCCCCCCCcEEEecc
Q 023386 144 GSLLQCVLTPGNPYMPLPNDEIIRRVARQVLALFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGS 223 (283)
Q Consensus 144 ~~~~~~vla~gg~~~~~~~~eLa~~lg~~i~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~t~~~~l~iaGd 223 (283)
++.++++++..+.+++.++++|++++..++..+||...+..+.+..++++.+++|.+.||.+.+||.++||++|+|+|||
T Consensus 446 g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD 525 (569)
T PLN02487 446 GSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGS 525 (569)
T ss_pred ceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCc
Confidence 45677788888889999999999999999999999877777788899999999999999999999999999999999999
Q ss_pred ccccCCCCcchhHHHHHHHHHHHHHHhccchHHHHHHHHHh
Q 023386 224 YTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAF 264 (283)
Q Consensus 224 ~t~~~~~~t~ega~~~g~~aA~~il~~~g~v~g~~~~~~~~ 264 (283)
||.++|++|||||++||..||+.|+.+.+.+.+++.+.+.-
T Consensus 526 ~t~~~yPat~EgAv~SG~~AA~~i~~~~~~~~~~~~~~~~~ 566 (569)
T PLN02487 526 YTKQDYIDSMEGATLSGRQAAAYICEAGEELAGLRKKLAAE 566 (569)
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999887654
No 2
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=1.2e-22 Score=191.00 Aligned_cols=102 Identities=39% Similarity=0.563 Sum_probs=90.5
Q ss_pred EEEcCCCCCCCCChHHHHHHHcccccccCCCCccccccccceEeecccccccCCCCCCCCCCCCCCCCcEEEeccccccC
Q 023386 149 CVLTPGNPYMPLPNDEIIRRVARQVLALFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQD 228 (283)
Q Consensus 149 ~vla~gg~~~~~~~~eLa~~lg~~i~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~t~~~~l~iaGd~t~~~ 228 (283)
.+++.+..+.....++++..+...+...+|.+.... .+.++++..++++...||++.+||.+.||++|++++|||+.++
T Consensus 362 ~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~ 440 (485)
T COG3349 362 KVLAPGWPFLFESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQP 440 (485)
T ss_pred hhhcccccccccchhhHHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecC
Confidence 355555556666677888888889999999988777 6788999999999999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHhc
Q 023386 229 YIDSMEGPTLSDRQASAYICNAG 251 (283)
Q Consensus 229 ~~~t~ega~~~g~~aA~~il~~~ 251 (283)
+..+||+|+.+|+.||+.++...
T Consensus 441 ~~~smE~A~~sGl~AA~~v~~~~ 463 (485)
T COG3349 441 YLGSMEGATLSGLLAANAILDNL 463 (485)
T ss_pred CcCccchhhhhHHHHHHHHHHhh
Confidence 99999999999999999998664
No 3
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.88 E-value=1.3e-21 Score=187.86 Aligned_cols=102 Identities=67% Similarity=1.066 Sum_probs=92.5
Q ss_pred EEEEEcCCCCCCCCChHHHHHHHcccccccCCCCccccccccceEeecccccccCCCCCCCCCCCCCCCCcEEEeccccc
Q 023386 147 LQCVLTPGNPYMPLPNDEIIRRVARQVLALFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTK 226 (283)
Q Consensus 147 ~~~vla~gg~~~~~~~~eLa~~lg~~i~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~t~~~~l~iaGd~t~ 226 (283)
++++++.++.++..++++|++++..++...||......+.+..+++..+++|.+.||...+||..+||++|+|+||||+.
T Consensus 373 l~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~ 452 (474)
T TIGR02732 373 LQCVLTPGDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQ 452 (474)
T ss_pred EEEEEeChhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccc
Confidence 55667777777778899999999999999999766667777789999999999999999999999999999999999999
Q ss_pred cCCCCcchhHHHHHHHHHHHHH
Q 023386 227 QDYIDSMEGPTLSDRQASAYIC 248 (283)
Q Consensus 227 ~~~~~t~ega~~~g~~aA~~il 248 (283)
++|+++||||++||..||+.||
T Consensus 453 ~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 453 QDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred cCchHHHhHHHHHHHHHHHHhC
Confidence 9999999999999999999874
No 4
>PLN02612 phytoene desaturase
Probab=99.79 E-value=5.9e-18 Score=165.90 Aligned_cols=105 Identities=31% Similarity=0.552 Sum_probs=88.6
Q ss_pred EEcCCCCCCCCChHHHHHHHcccccccCCCCc-----cccccccceEeecccccccCCCCCCCCCCCCCCCCcEEEeccc
Q 023386 150 VLTPGNPYMPLPNDEIIRRVARQVLALFPLPQ-----GLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 224 (283)
Q Consensus 150 vla~gg~~~~~~~~eLa~~lg~~i~~~~P~l~-----~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~t~~~~l~iaGd~ 224 (283)
+++....|...+.+++++.+..++.+.||... ...+....+++.+.++|...||.+.++|.++||++|+|+||||
T Consensus 442 ~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~ 521 (567)
T PLN02612 442 VFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDY 521 (567)
T ss_pred EEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecc
Confidence 44444455566788999999999999999652 2334455677889999999999999999999999999999999
Q ss_pred cccCCCCcchhHHHHHHHHHHHHHHhccch
Q 023386 225 TKQDYIDSMEGPTLSDRQASAYICNAGEEL 254 (283)
Q Consensus 225 t~~~~~~t~ega~~~g~~aA~~il~~~g~v 254 (283)
|.++|+.+||||+.||..||++|+...+.+
T Consensus 522 t~~~~~~smeGAv~SG~~AA~~I~~~~~~~ 551 (567)
T PLN02612 522 TKQKYLASMEGAVLSGKLCAQSIVQDYELL 551 (567)
T ss_pred eeCCchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999887664
No 5
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.71 E-value=3.7e-17 Score=149.61 Aligned_cols=162 Identities=17% Similarity=0.226 Sum_probs=106.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCCCceeecc-ceeeccCCh---HHHHH-HHHHHH
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMG-LHIFFGCYN---NLFRL-MKKFFM 103 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g-~~~~~~~~~---~~~~~-~~~~~~ 103 (283)
..+||+|||||++|||||+.++++|++|+|||+++++|.|+..+..++|+..+.. +..|...++ ++++- +.+|=.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 4689999999999999999999999999999999999999998876666665432 455556666 44332 333211
Q ss_pred HHHHHHHHhhcc--------eeec----------------CCCceEEeecceecCC----CceeecC-CceeE---EEEE
Q 023386 104 DVYRQLRQALGF--------LLRT----------------PDAGFSCFADLALTSP----EDYYGEG-QGSLL---QCVL 151 (283)
Q Consensus 104 ~~~~~~~~~~g~--------~~~~----------------~~~~~~~~~d~~~~~~----~~~~~~g-~~~~~---~~vl 151 (283)
.....+-...|+ .+|+ +..++++.....+..+ ..|.... .+..+ ..|+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEE
Confidence 111111111111 1111 1234444444333322 1233322 22123 3399
Q ss_pred cCCCCCCCCC-----hHHHHHHHcccccccCCCCccccccccce
Q 023386 152 TPGNPYMPLP-----NDEIIRRVARQVLALFPLPQGLEVIWSSF 190 (283)
Q Consensus 152 a~gg~~~~~~-----~~eLa~~lg~~i~~~~P~l~~l~~~~~~v 190 (283)
++||.++|.. +.+++++++|++.+++|++++++++++.+
T Consensus 162 AtGG~S~P~lGstg~gy~iA~~~G~~I~~~rpalvpft~~~~~~ 205 (408)
T COG2081 162 ATGGKSWPKLGSTGFGYPIARQFGHTITPLRPALVPFTLDESFL 205 (408)
T ss_pred ecCCcCCCCCCCCchhhHHHHHcCCccccCccccCCccCCHHHH
Confidence 9999999875 55999999999999999999999998765
No 6
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.68 E-value=1.6e-15 Score=144.91 Aligned_cols=93 Identities=37% Similarity=0.618 Sum_probs=77.0
Q ss_pred CCCCCChHHHHHHHcccccccCCCC----ccccccccceEeecccccccCCCCCCCCCCCCCCCCcEEEeccccccCCCC
Q 023386 156 PYMPLPNDEIIRRVARQVLALFPLP----QGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYID 231 (283)
Q Consensus 156 ~~~~~~~~eLa~~lg~~i~~~~P~l----~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~t~~~~l~iaGd~t~~~~~~ 231 (283)
.+...+.+++++.+..++...||.. ....+.+...++.+.+.|...||...++|..++|++|+|+||||+.+.|+.
T Consensus 357 ~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g 436 (453)
T TIGR02731 357 DWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLA 436 (453)
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCcccc
Confidence 3344567899999999999999842 233344556678888888788998788898899999999999999999999
Q ss_pred cchhHHHHHHHHHHHHH
Q 023386 232 SMEGPTLSDRQASAYIC 248 (283)
Q Consensus 232 t~ega~~~g~~aA~~il 248 (283)
+||||+.||.+||++|+
T Consensus 437 ~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 437 SMEGAVLSGKLCAQAIV 453 (453)
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 99999999999999874
No 7
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.66 E-value=1.9e-15 Score=145.25 Aligned_cols=73 Identities=41% Similarity=0.736 Sum_probs=66.0
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCCCceeeccceeeccCChHHHHHH
Q 023386 26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLM 98 (283)
Q Consensus 26 ~~~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~ 98 (283)
.+.+.++|+|||||+|||+||.+|.+.|++|+|||..+++|||+.++....+..++.|.+++++.+++.+..+
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l 83 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALL 83 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHH
Confidence 3345689999999999999999999999999999999999999999998888889999999999998765554
No 8
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.61 E-value=5.8e-16 Score=145.78 Aligned_cols=160 Identities=18% Similarity=0.270 Sum_probs=83.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCCCceee--ccceeeccCC---hHHHH-HHHHHHHH
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIE--MGLHIFFGCY---NNLFR-LMKKFFMD 104 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~--~g~~~~~~~~---~~~~~-~~~~~~~~ 104 (283)
|||+|||||+|||+||+.|+++|++|+||||++++|.|+..+.+++|+..+ .....|...+ +.+.+ .++++-..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 699999999999999999999999999999999999999988777887766 4555665542 22222 22222111
Q ss_pred HHHHHHHhhcc--------eeec----------------CCCceEEeecceecCC----Cc-eeecC-CceeEEE---EE
Q 023386 105 VYRQLRQALGF--------LLRT----------------PDAGFSCFADLALTSP----ED-YYGEG-QGSLLQC---VL 151 (283)
Q Consensus 105 ~~~~~~~~~g~--------~~~~----------------~~~~~~~~~d~~~~~~----~~-~~~~g-~~~~~~~---vl 151 (283)
....+-...|+ .+|+ ...++++..+..+..+ .. |.... ....+.+ |+
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEE
Confidence 11111111111 0111 1112333333222221 11 32222 3333333 89
Q ss_pred cCCCCCCCCC-----hHHHHHHHcccccccCCCCccccccccce
Q 023386 152 TPGNPYMPLP-----NDEIIRRVARQVLALFPLPQGLEVIWSSF 190 (283)
Q Consensus 152 a~gg~~~~~~-----~~eLa~~lg~~i~~~~P~l~~l~~~~~~v 190 (283)
|+|+.++|.. +.+++++++|++.+++|+++++.+.+..+
T Consensus 161 AtGG~S~p~~GS~G~gy~~a~~lGh~i~~~~PaL~~l~~~~~~~ 204 (409)
T PF03486_consen 161 ATGGKSYPKTGSDGSGYRIAKKLGHTITPPYPALVPLKCDEPWL 204 (409)
T ss_dssp ----SSSGGGT-SSHHHHHHHHTT--EEEEEEES--EE--HHHH
T ss_pred ecCCCCccccCCCcHHHHHHHHCCCcEecCCCccCCeeecchhh
Confidence 9999998875 45999999999999999999999886543
No 9
>PRK07233 hypothetical protein; Provisional
Probab=99.55 E-value=1.7e-13 Score=129.52 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=71.1
Q ss_pred CChHHHHHHHcccccccCCCCccccccccceEeecccccccCCCCCCCCCCCCCCCCcEEEeccccccCCCCcchhHHHH
Q 023386 160 LPNDEIIRRVARQVLALFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLS 239 (283)
Q Consensus 160 ~~~~eLa~~lg~~i~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~t~~~~l~iaGd~t~~~~~~t~ega~~~ 239 (283)
...+++++.+..++...+|.+....+....+.+...+.....||...++|..+++++|+|+|||+....+..+|++|+.+
T Consensus 340 ~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~s 419 (434)
T PRK07233 340 MSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRA 419 (434)
T ss_pred CCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHH
Confidence 34568888888889999986544345555667766666666777666778778899999999996555667789999999
Q ss_pred HHHHHHHHHHh
Q 023386 240 DRQASAYICNA 250 (283)
Q Consensus 240 g~~aA~~il~~ 250 (283)
|..||++|++.
T Consensus 420 G~~aA~~i~~~ 430 (434)
T PRK07233 420 GRRVAREILED 430 (434)
T ss_pred HHHHHHHHhhh
Confidence 99999999875
No 10
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.43 E-value=3e-13 Score=95.73 Aligned_cols=65 Identities=40% Similarity=0.754 Sum_probs=56.0
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCCCceeeccceeecc--CChHHHHHHHH
Q 023386 35 IIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG--CYNNLFRLMKK 100 (283)
Q Consensus 35 IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~--~~~~~~~~~~~ 100 (283)
|||||++||++|+.|+++|++|+|||+++.+||++.++.. ++..++.|.+++.. .++++.+++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~d~g~~~~~~~~~~~~~~~l~~~ 67 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI-PGYRFDLGAHYFFPPDDYPNLFRLLRE 67 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE-TTEEEETSS-SEEETTSCHHHHHHHHT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE-CCEEEeeccEEEeCCCCchHHHHHHcC
Confidence 8999999999999999999999999999999999998764 66889999999987 45777777664
No 11
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.33 E-value=2.8e-11 Score=105.74 Aligned_cols=70 Identities=27% Similarity=0.505 Sum_probs=61.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCCCceeeccceeeccCChHHHHHHHHH
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~ 101 (283)
.+|+|||+|++||+||+.|+..|++|+||||..-+|||+.+.+ ..+..+++|..+|......+.+.++..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRR-l~~g~~DhGAqYfk~~~~~F~~~Ve~~ 71 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRR-LDGGRFDHGAQYFKPRDELFLRAVEAL 71 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheec-cCCccccccceeecCCchHHHHHHHHH
Confidence 4799999999999999999999999999999999999998765 555569999999988888777776654
No 12
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.26 E-value=9.8e-12 Score=118.89 Aligned_cols=71 Identities=30% Similarity=0.445 Sum_probs=64.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEccccccccceeeeecCCCceeeccceeeccCChHHHHHHHHH
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~----G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~ 101 (283)
++||+|||||++||+||+.|+++ |++|+|||+++++||++.+.. ..|..++.|+|+++..++++.++++++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~l 76 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDL 76 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHc
Confidence 47999999999999999999999 999999999999999999865 567889999999999988888777664
No 13
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.25 E-value=1e-11 Score=118.11 Aligned_cols=70 Identities=34% Similarity=0.561 Sum_probs=61.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccccccceeeeecCCCceeeccceeeccCChHHHHHHHHH
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G--~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~ 101 (283)
++|+|||||++||+||+.|+++| ++|+|||+++++||++.+.. .+|..+|.|.|++++.++++..+++++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~l 72 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKEL 72 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHc
Confidence 47999999999999999999988 89999999999999999865 567889999999888887777666554
No 14
>PRK07208 hypothetical protein; Provisional
Probab=99.25 E-value=1.8e-11 Score=117.80 Aligned_cols=73 Identities=34% Similarity=0.556 Sum_probs=65.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCCCceeeccceeeccCChHHHHHHHHH
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~ 101 (283)
+.+++|+|||||++||+||+.|+++|++|+|+|+.+++||++.+.. ..|..++.|+|++...++++.++++++
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l 74 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEI 74 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHh
Confidence 4568999999999999999999999999999999999999988754 567889999999998888888777665
No 15
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.22 E-value=1.6e-11 Score=117.77 Aligned_cols=71 Identities=24% Similarity=0.391 Sum_probs=62.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC------CCcEEEEccccccccceeeeecCCCceeeccceeeccCChHHHHHHHHH
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ------GHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~------G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~ 101 (283)
+++|+|||||++||+||+.|++. |++|+|||+++++||++.+.. ..|..+|.|+|+++..+++++++++++
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~l 77 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDL 77 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHc
Confidence 36899999999999999999986 379999999999999999876 567889999999998888888887775
No 16
>PLN02268 probable polyamine oxidase
Probab=99.20 E-value=3.3e-11 Score=114.56 Aligned_cols=69 Identities=35% Similarity=0.539 Sum_probs=58.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCCCceeeccceeeccC--ChHHHHHHHH
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC--YNNLFRLMKK 100 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~~--~~~~~~~~~~ 100 (283)
++|+|||||++||+||+.|.++|++|+|||+++++|||+.+.. ..|..+|+|++|+++. .+.+.+++++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~~~~~~~l~~~ 71 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCNENPLAPLIGR 71 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCCCchHHHHHHH
Confidence 4899999999999999999999999999999999999998754 4677899999999864 3345555544
No 17
>PLN02576 protoporphyrinogen oxidase
Probab=99.18 E-value=4.7e-11 Score=115.35 Aligned_cols=68 Identities=29% Similarity=0.422 Sum_probs=59.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEccccccccceeeeecCCCceeeccceeeccCChHHHHH
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRL 97 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~-G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~ 97 (283)
+.+||+|||||++||+||++|+++ |++|+|||+++++||++.+.. .+|..++.|+|++...++.+..+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l 79 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSA 79 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHH
Confidence 457999999999999999999999 999999999999999999875 56888999999998766555443
No 18
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.15 E-value=1.5e-09 Score=101.45 Aligned_cols=63 Identities=33% Similarity=0.448 Sum_probs=52.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCCCceeeccceeeccCC
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~~~ 91 (283)
.+..||+|||+|.+||++|+.|.+.|++|+|+|.++++|||+.+.+. .+-..+.+.+++..+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~ 67 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTH 67 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccc
Confidence 45689999999999999999999999999999999999999987665 5555666644444433
No 19
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.10 E-value=1.7e-10 Score=111.42 Aligned_cols=70 Identities=30% Similarity=0.504 Sum_probs=59.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCCCceeeccceeeccCCh-HHHHHHH
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN-NLFRLMK 99 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~~~~-~~~~~~~ 99 (283)
+.+||+|||||+.||+||..|+++|++|+||||++.+||+..+.. ..|+.++.|++++..... .+++.+.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e-~~Gf~fd~G~~~~~~~~~~~~~~~l~ 72 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFE-LDGFRFDTGPSWYLMPDPGPLFRELG 72 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEe-ccceEeccCcceeecCchHHHHHHhc
Confidence 468999999999999999999999999999999999999999876 449999999988765443 3444444
No 20
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.05 E-value=3.6e-10 Score=107.04 Aligned_cols=70 Identities=34% Similarity=0.613 Sum_probs=62.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccccccceeeeecCCCceeeccceeeccCChHHHHHHHHH
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G--~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~ 101 (283)
++|+|||||++||+||++|++++ .+|+|||+.+++||.+.+. ..+|..++.|+|.|...-..+.++++++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~-~~~G~~~e~G~~~f~~~~~~~l~li~eL 72 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTV-KIDGFLFERGPHHFLARKEEILDLIKEL 72 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEE-eeCCEEEeechhheecchHHHHHHHHHh
Confidence 47999999999999999999999 9999999999999999987 4899999999999987755566666665
No 21
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.00 E-value=1.2e-09 Score=102.25 Aligned_cols=70 Identities=36% Similarity=0.581 Sum_probs=60.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEccccccccceeeeecCCCceeeccceeecc-CChHHHHHHHH
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG-CYNNLFRLMKK 100 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G-~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~-~~~~~~~~~~~ 100 (283)
..+|+|||||+|||+||.+|-+.| .+|+|||..+++|||+.+.. ..++.+++|++|+++ ..+.++++.++
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~-~~d~~ielGAqwihG~~gNpVY~la~~ 92 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIP-FADGVIELGAQWIHGEEGNPVYELAKE 92 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEE-cCCCeEeecceeecCCCCChHHHHHHH
Confidence 468999999999999999999776 58999999999999999876 445589999999999 55667777764
No 22
>PLN02568 polyamine oxidase
Probab=98.99 E-value=1.3e-09 Score=106.52 Aligned_cols=61 Identities=34% Similarity=0.553 Sum_probs=55.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-----CcEEEEccccccccceeeeecCCCceeeccceeeccCC
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG-----HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G-----~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~~~ 91 (283)
.++|+|||||++||+||+.|++.| ++|+|||+++++||++.++. ..|..++.|++++++..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~g~~ 70 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSE-FGGERIEMGATWIHGIG 70 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEE-eCCeEEecCCceeCCCC
Confidence 578999999999999999999887 89999999999999998875 45788999999999753
No 23
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.99 E-value=9.1e-10 Score=106.68 Aligned_cols=56 Identities=29% Similarity=0.516 Sum_probs=52.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCCCceeeccceeecc
Q 023386 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89 (283)
Q Consensus 33 v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~ 89 (283)
|+|||||++||+||..|+++|++|+|||+++++||++.++. .+|..++.|++++..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~ 56 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITM 56 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEcc
Confidence 68999999999999999999999999999999999999886 578899999998864
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.97 E-value=1.3e-09 Score=105.41 Aligned_cols=58 Identities=33% Similarity=0.576 Sum_probs=54.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCCCceeeccceeecc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~ 89 (283)
+||+|||||++||+||..|+++|++|+|||+++.+||+..++. ..|..++.|++++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~ 59 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAG 59 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEe
Confidence 6899999999999999999999999999999999999999886 578899999999865
No 25
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.97 E-value=1.7e-09 Score=96.77 Aligned_cols=73 Identities=30% Similarity=0.418 Sum_probs=64.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecC-CCc-eeeccceeeccCChHHHHHHHHHH
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK-HGN-HIEMGLHIFFGCYNNLFRLMKKFF 102 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~-~g~-~~~~g~~~~~~~~~~~~~~~~~~~ 102 (283)
++|++|||+|++|+.+|..|++.|++|+|+||.+++||+.....+. .|- ....|+|+|+..+.+++.++.++.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~ 75 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFT 75 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhh
Confidence 4799999999999999999999999999999999999999876654 333 356899999999999999988873
No 26
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.93 E-value=2.9e-09 Score=99.46 Aligned_cols=71 Identities=27% Similarity=0.395 Sum_probs=59.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCCCce-eeccceeeccCChHHHHHHHHH
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNH-IEMGLHIFFGCYNNLFRLMKKF 101 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~g~~-~~~g~~~~~~~~~~~~~~~~~~ 101 (283)
++||+|||||++|+++|.+|++.|.+|+|+|+.+.+||...+.. ..+.. .+.|+|+++.....+++++.++
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~g~~~~~~G~h~f~t~~~~v~~~~~~~ 72 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DETILFHQYGPHIFHTNNQYVWDYISPF 72 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CCCceEEeecceeEecCcHHHHHHHHhh
Confidence 36999999999999999999999999999999999999876543 33333 4789999998888887776665
No 27
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.89 E-value=7.4e-09 Score=97.74 Aligned_cols=42 Identities=31% Similarity=0.343 Sum_probs=38.1
Q ss_pred EEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecC
Q 023386 34 AIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK 75 (283)
Q Consensus 34 ~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~ 75 (283)
+|||||++||+||+.|+++|++|+|+||++.+|+++..+.++
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~g 42 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGG 42 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCc
Confidence 699999999999999999999999999999999998765433
No 28
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.89 E-value=3.6e-09 Score=95.57 Aligned_cols=73 Identities=33% Similarity=0.632 Sum_probs=63.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeee---cCCCceeeccceeecc-CChHHHHHHHHH
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI---DKHGNHIEMGLHIFFG-CYNNLFRLMKKF 101 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~---~~~g~~~~~g~~~~~~-~~~~~~~~~~~~ 101 (283)
.++.+|+|||+|++||+||+.|++ -++|++||.+.++||...+.. +++|..++.|...++. .|+++.++++.+
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~-rhdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~i 82 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSR-RHDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTI 82 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhc-ccceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHc
Confidence 467899999999999999999974 489999999999999988763 4556678999999987 799999999887
No 29
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.86 E-value=3.9e-09 Score=102.16 Aligned_cols=59 Identities=31% Similarity=0.602 Sum_probs=54.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCCCceeeccceeeccC
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~~ 90 (283)
+||+|||+|++||+||..|+++|++|+||||++.+||+..++. .+|..++.|++++.+.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~ 59 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGF 59 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheec
Confidence 5899999999999999999999999999999999999999876 5889999999987643
No 30
>PLN02529 lysine-specific histone demethylase 1
Probab=98.85 E-value=8.3e-09 Score=103.57 Aligned_cols=65 Identities=34% Similarity=0.495 Sum_probs=56.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCC-C--ceeeccceeeccCChH
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKH-G--NHIEMGLHIFFGCYNN 93 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~-g--~~~~~g~~~~~~~~~~ 93 (283)
..++|+|||||++||+||..|+++|++|+|||+++++||++.+..... | ..+++|++|+++...+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~n 226 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHAN 226 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccc
Confidence 457999999999999999999999999999999999999998775332 3 2689999999887555
No 31
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.83 E-value=1.2e-08 Score=103.12 Aligned_cols=65 Identities=34% Similarity=0.542 Sum_probs=54.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCC-C--ceeeccceeeccCChH
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKH-G--NHIEMGLHIFFGCYNN 93 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~-g--~~~~~g~~~~~~~~~~ 93 (283)
+.++|+|||||++||+||+.|++.|++|+|+|+++++||++.+....+ + ..+++|++++++...+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~n 304 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGN 304 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCcc
Confidence 468999999999999999999999999999999999999998765332 2 2478898888876543
No 32
>PLN02676 polyamine oxidase
Probab=98.83 E-value=9.7e-09 Score=99.29 Aligned_cols=60 Identities=33% Similarity=0.536 Sum_probs=53.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccccccccceeeeecCCCceeeccceeecc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~-~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~ 89 (283)
..+||+|||||++||+||++|+++|. +|+|||+++++||++.+.. ..|..++.|.+|+++
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~-~~g~~~d~g~~~~~~ 85 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKAN-FAGVSVELGANWVEG 85 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeec-CCCeEEecCCEEEEc
Confidence 36799999999999999999999998 6999999999999998654 456778999999864
No 33
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=98.81 E-value=8.9e-09 Score=95.29 Aligned_cols=73 Identities=23% Similarity=0.380 Sum_probs=61.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcE--EEEccccccccceeeeecCCCceeeccceeeccCCh---HHHHHHHHH
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEV--DIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN---NLFRLMKKF 101 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V--~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~~~~---~~~~~~~~~ 101 (283)
+.++|+|+|||++||++||+|++++-+| +|+|+.+++||.+.+....++..++.|+..+....+ +...++.++
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL 87 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL 87 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc
Confidence 4689999999999999999999998765 569999999999998666788999999999987766 444444443
No 34
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.80 E-value=1.3e-08 Score=99.02 Aligned_cols=71 Identities=27% Similarity=0.433 Sum_probs=56.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEccccccccceeeeec-CCCceeeccceeeccCChHHHHHHHHH
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIGGKVGSFID-KHGNHIEMGLHIFFGCYNNLFRLMKKF 101 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~----G~~V~vlE~~~~~Gg~~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~~ 101 (283)
.++|+|||||++||+||++|++. |.+|+|||+++.+||++..+.. .+|+.++.|.. +...+.+++++++.+
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~-~~~~y~~l~~ll~~i 97 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGRE-MENHFECLWDLFRSI 97 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCC-ccchHHHHHHHHHhc
Confidence 57999999999999999999996 6799999999999999876543 34666666644 466777777777443
No 35
>PLN03000 amine oxidase
Probab=98.69 E-value=4e-08 Score=99.58 Aligned_cols=68 Identities=31% Similarity=0.492 Sum_probs=58.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCC---CceeeccceeeccCChHHHH
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKH---GNHIEMGLHIFFGCYNNLFR 96 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~---g~~~~~g~~~~~~~~~~~~~ 96 (283)
+..+|+|||||++||.||..|.+.|++|+|+|+.+++||++.+....+ +..+++|++|+++...+.+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~ 253 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLG 253 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHH
Confidence 358999999999999999999999999999999999999998775322 45689999999887655443
No 36
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.69 E-value=9.4e-10 Score=106.84 Aligned_cols=41 Identities=41% Similarity=0.564 Sum_probs=38.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..||+|||+|++||+||+.+++.|.+|+||||.+.+||...
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~ 101 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM 101 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence 57999999999999999999999999999999999988643
No 37
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.67 E-value=2.1e-08 Score=85.55 Aligned_cols=41 Identities=34% Similarity=0.557 Sum_probs=38.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..||+|+|||++||+||++|+++|.+|+|||++-.+||-+.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 46999999999999999999999999999999999998765
No 38
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.65 E-value=2e-08 Score=85.89 Aligned_cols=41 Identities=37% Similarity=0.515 Sum_probs=34.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.+||+|||||++||+||+.|+++|++|+|||++..+||.+.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 47999999999999999999999999999999999998865
No 39
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.59 E-value=1.2e-07 Score=88.25 Aligned_cols=62 Identities=34% Similarity=0.668 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHCCCcEEEEccccccccceeeeecCC-CceeeccceeeccCChHHHHHHHHH
Q 023386 40 LAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKH-GNHIEMGLHIFFGCYNNLFRLMKKF 101 (283)
Q Consensus 40 ~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~-g~~~~~g~~~~~~~~~~~~~~~~~~ 101 (283)
+|||+||++|+++|++|+|||+++++||++.++.... |..++.|+++++..++++..++.++
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l 63 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDEL 63 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHH
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHh
Confidence 5899999999999999999999999999999987654 8999999999998888888877775
No 40
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.57 E-value=8.1e-08 Score=92.27 Aligned_cols=43 Identities=40% Similarity=0.567 Sum_probs=40.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~ 71 (283)
..++|+|||||++||+||.+|.+.|++|+|||+++.+||.+..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 3689999999999999999999999999999999999999864
No 41
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.53 E-value=3.2e-07 Score=86.14 Aligned_cols=99 Identities=28% Similarity=0.533 Sum_probs=78.5
Q ss_pred EcCCCCCCCCChHHHHHHHcccccccCCCCccccccccceEeecccccccCCCCCCCCCCCCCCCCcEEEeccccccCCC
Q 023386 151 LTPGNPYMPLPNDEIIRRVARQVLALFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYI 230 (283)
Q Consensus 151 la~gg~~~~~~~~eLa~~lg~~i~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~~~t~~~~l~iaGd~t~~~~~ 230 (283)
+.........+.+++.+.+..++.+.+|......+.+..+.+..++.+...||...++|...+|.++|++|||++..+|+
T Consensus 321 ~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~ 400 (419)
T TIGR03467 321 ISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWP 400 (419)
T ss_pred EecchhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEecccccCCCc
Confidence 33333334456789999999999999986533445566677777777777788777788888899999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHH
Q 023386 231 DSMEGPTLSDRQASAYICN 249 (283)
Q Consensus 231 ~t~ega~~~g~~aA~~il~ 249 (283)
.+||||+.||..||++|++
T Consensus 401 ~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 401 ATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred chHHHHHHHHHHHHHHHhC
Confidence 9999999999999999863
No 42
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.51 E-value=1.1e-07 Score=89.64 Aligned_cols=43 Identities=37% Similarity=0.407 Sum_probs=39.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~ 71 (283)
.++||+|||||+||++||+.|++.|.+|+|||+.+.+|-+..+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 3689999999999999999999999999999999999987654
No 43
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.51 E-value=1.1e-06 Score=82.81 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=35.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~ 68 (283)
.++|+|||+|..|+-+|..|++.|.+|+|+|+.+.+.++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~ 182 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR 182 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh
Confidence 468999999999999999999999999999998876543
No 44
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.48 E-value=1.6e-07 Score=83.41 Aligned_cols=41 Identities=34% Similarity=0.595 Sum_probs=38.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.+||+|||||++||+||+.|++.|++|+|+|+++.+||.+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~ 65 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMW 65 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccc
Confidence 58999999999999999999999999999999999988653
No 45
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.48 E-value=1.7e-07 Score=83.15 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=38.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccce
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~ 69 (283)
.+||+|||||++||+||+.|+++|++|+|+||++.+||.+
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 5899999999999999999999999999999999998764
No 46
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=98.46 E-value=1e-07 Score=89.01 Aligned_cols=135 Identities=17% Similarity=0.167 Sum_probs=79.2
Q ss_pred CCcEEEEccccccccceeeeecCCCceeeccc-eeecc---CChHHHHH-HHHHHHHHHHHHHHhhcc--------eeec
Q 023386 53 GHEVDIYESRSFIGGKVGSFIDKHGNHIEMGL-HIFFG---CYNNLFRL-MKKFFMDVYRQLRQALGF--------LLRT 119 (283)
Q Consensus 53 G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~-~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~g~--------~~~~ 119 (283)
|.+|+|||+++++|.|+..+.+++|+..+... ..+.. .++++.+. +..+-.....++-...|+ .+|+
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~grvfP 80 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSSGRVFP 80 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCCCEECC
Confidence 57899999999999999998777777766432 22222 22333222 322211111111111222 1121
Q ss_pred ----------------CCCceEEeecceecCCC--ceeec--CCceeE---EEEEcCCCCCCCCC-----hHHHHHHHcc
Q 023386 120 ----------------PDAGFSCFADLALTSPE--DYYGE--GQGSLL---QCVLTPGNPYMPLP-----NDEIIRRVAR 171 (283)
Q Consensus 120 ----------------~~~~~~~~~d~~~~~~~--~~~~~--g~~~~~---~~vla~gg~~~~~~-----~~eLa~~lg~ 171 (283)
...++++..+..+..++ .|... .....+ ..|+|+|+.++|.. +.+++++++|
T Consensus 81 ~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh 160 (376)
T TIGR03862 81 VEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGV 160 (376)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCC
Confidence 12345555555444331 23222 121122 44999999998876 4599999999
Q ss_pred cccccCCCCccccccc
Q 023386 172 QVLALFPLPQGLEVIW 187 (283)
Q Consensus 172 ~i~~~~P~l~~l~~~~ 187 (283)
++.+++|+|+++.+.+
T Consensus 161 ~i~~~~PaL~pl~~~~ 176 (376)
T TIGR03862 161 SVAPFAPANCGFLVDW 176 (376)
T ss_pred cccCCcCeeceEEccC
Confidence 9999999999999865
No 47
>PLN02976 amine oxidase
Probab=98.43 E-value=3.4e-07 Score=96.22 Aligned_cols=61 Identities=34% Similarity=0.545 Sum_probs=53.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeeecCCCceeeccceeeccC
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~~~ 90 (283)
.++|+|||||++|+.+|+.|++.|++|+|||+++.+||++.+.....+..++.|++++++.
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~ 753 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGV 753 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecc
Confidence 4789999999999999999999999999999999999998875434566788888888764
No 48
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.40 E-value=3.5e-07 Score=87.15 Aligned_cols=39 Identities=36% Similarity=0.509 Sum_probs=36.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~ 68 (283)
.+||+|||||++|++||+.|+++|++|+|+||.+.+|.+
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 589999999999999999999999999999999877654
No 49
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.38 E-value=3.6e-07 Score=87.01 Aligned_cols=44 Identities=45% Similarity=0.611 Sum_probs=41.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF 72 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~ 72 (283)
..++|+|||||+|||++|..|.+.|++|+||||.+.+||.+...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 46899999999999999999999999999999999999988743
No 50
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.38 E-value=6.4e-07 Score=85.89 Aligned_cols=36 Identities=39% Similarity=0.465 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+.+||+|||||++|++||+.|+++|++|+|+|+.+.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 468999999999999999999999999999999853
No 51
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.36 E-value=5.6e-07 Score=93.26 Aligned_cols=42 Identities=29% Similarity=0.485 Sum_probs=39.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..++|+|||+|+|||+||++|+++|++|+|||+.+.+||.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 368999999999999999999999999999999999999764
No 52
>PRK07121 hypothetical protein; Validated
Probab=98.36 E-value=8.4e-07 Score=85.95 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=38.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
...||+|||+|.+||+||+++++.|.+|+|+||.+..||...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA 60 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 468999999999999999999999999999999999888754
No 53
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.34 E-value=5.2e-07 Score=86.56 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=39.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
+..+||+|||||++|+.||++|++.|++|+|+|+.+.+||.+.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~ 45 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCT 45 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccc
Confidence 3468999999999999999999999999999999989999864
No 54
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.34 E-value=4.5e-07 Score=76.87 Aligned_cols=39 Identities=38% Similarity=0.615 Sum_probs=32.8
Q ss_pred EEECCCHHHHHHHHHHHHCCCc-EEEEccccccccceeee
Q 023386 34 AIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIGGKVGSF 72 (283)
Q Consensus 34 ~IIGgG~aGl~aA~~l~~~G~~-V~vlE~~~~~Gg~~~~~ 72 (283)
+|||||++||++|++|.++|.+ |+|||+++.+||.+..+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~ 40 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY 40 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe
Confidence 6999999999999999999999 99999999999998753
No 55
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.33 E-value=5e-07 Score=86.06 Aligned_cols=39 Identities=31% Similarity=0.588 Sum_probs=33.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
||+|||||++|++||+.+++.|++|+|+|+.+.+||...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 799999999999999999999999999999999999865
No 56
>PRK10015 oxidoreductase; Provisional
Probab=98.33 E-value=6.2e-07 Score=85.49 Aligned_cols=39 Identities=31% Similarity=0.475 Sum_probs=35.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~ 68 (283)
.+||+|||||++|++||+.|+++|++|+|+||.+.+|.+
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k 43 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK 43 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence 589999999999999999999999999999998876544
No 57
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.33 E-value=7.3e-07 Score=84.09 Aligned_cols=38 Identities=29% Similarity=0.516 Sum_probs=35.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
...+||+|||||++||++|..|++.|++|+|+|+.+..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 34689999999999999999999999999999998764
No 58
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.33 E-value=6e-07 Score=86.42 Aligned_cols=41 Identities=34% Similarity=0.478 Sum_probs=38.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.+||+|||+|++|+.||..+++.|++|+|+|+++.+||.+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 58999999999999999999999999999999888999865
No 59
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.32 E-value=8.7e-07 Score=85.54 Aligned_cols=42 Identities=40% Similarity=0.501 Sum_probs=38.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLD--QGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~--~G~~V~vlE~~~~~Gg~~~ 70 (283)
..++|+|||+|++||.||..|++ .|++|+|||+.+.+||.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr 68 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR 68 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe
Confidence 35789999999999999999987 7999999999999999766
No 60
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.32 E-value=8.5e-07 Score=91.73 Aligned_cols=42 Identities=43% Similarity=0.620 Sum_probs=39.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..++|+|||||++||+||++|+++|++|+|||+.+.+||.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence 357999999999999999999999999999999999999865
No 61
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.32 E-value=1.3e-05 Score=75.04 Aligned_cols=37 Identities=24% Similarity=0.466 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
.++|+|||||.+|+.+|..|++.|.+|+++|+.+.+.
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l 177 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL 177 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc
Confidence 4689999999999999999999999999999987654
No 62
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.30 E-value=6.4e-07 Score=87.46 Aligned_cols=41 Identities=41% Similarity=0.633 Sum_probs=35.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceee
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~ 71 (283)
++|+|||||++||++|..|.+.|++|+|||+++.+||.+..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 68999999999999999999999999999999999999864
No 63
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.29 E-value=9.4e-07 Score=82.23 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=33.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
+||+|||||++|+++|++|+++|++|+|+|+.+..+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~ 36 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPH 36 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence 589999999999999999999999999999987643
No 64
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.28 E-value=1.2e-06 Score=83.92 Aligned_cols=45 Identities=36% Similarity=0.496 Sum_probs=41.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccccccccceeee
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIGGKVGSF 72 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~-V~vlE~~~~~Gg~~~~~ 72 (283)
+..+||+|||||.+||++|++|.++|.+ ++||||++.+||.+...
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ 51 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN 51 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc
Confidence 3468999999999999999999999998 99999999999987653
No 65
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.26 E-value=8.4e-07 Score=80.84 Aligned_cols=35 Identities=43% Similarity=0.590 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
+||+|||||++||++|..|+++|++|+|||+.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 68999999999999999999999999999998774
No 66
>PRK12831 putative oxidoreductase; Provisional
Probab=98.25 E-value=1.5e-06 Score=83.60 Aligned_cols=42 Identities=38% Similarity=0.529 Sum_probs=39.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..++|+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 468999999999999999999999999999999999999764
No 67
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.25 E-value=1.1e-06 Score=82.88 Aligned_cols=36 Identities=31% Similarity=0.687 Sum_probs=34.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
+||+|||||++|+++|++|++.|++|+|+|+++.+|
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~ 37 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAA 37 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 699999999999999999999999999999998655
No 68
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.24 E-value=1.1e-06 Score=82.86 Aligned_cols=41 Identities=39% Similarity=0.687 Sum_probs=39.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.++++|||||++|+.||..|++.|++|.++||++.+||++.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrma 164 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA 164 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHH
Confidence 57899999999999999999999999999999999999975
No 69
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.24 E-value=1.3e-06 Score=78.16 Aligned_cols=39 Identities=33% Similarity=0.450 Sum_probs=35.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
+||+|||||++||+||..|++.|++|+|+|+++ .||++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~ 39 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT 39 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee
Confidence 589999999999999999999999999999987 677655
No 70
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.24 E-value=1.2e-06 Score=82.75 Aligned_cols=39 Identities=36% Similarity=0.642 Sum_probs=34.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
||+|||+|.+||+||+.|+++|.+|+|+||.+..||...
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~ 39 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSA 39 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccc
Confidence 799999999999999999999999999999999998543
No 71
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.23 E-value=1.4e-06 Score=81.72 Aligned_cols=38 Identities=34% Similarity=0.579 Sum_probs=35.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
+..||+|||||++||++|..|++.|++|+|+||.+.++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 45799999999999999999999999999999988754
No 72
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.23 E-value=1.3e-06 Score=83.67 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=37.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.+||+|||||++|+.||++++++|++|+|+|+ +.+||.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 48999999999999999999999999999999 47899765
No 73
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.23 E-value=1.4e-06 Score=77.64 Aligned_cols=37 Identities=41% Similarity=0.547 Sum_probs=34.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg 67 (283)
+||+|||||++||++|+.|++.|.+|+|+|+.+..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 5899999999999999999999999999999987654
No 74
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.22 E-value=1.5e-06 Score=82.90 Aligned_cols=41 Identities=37% Similarity=0.520 Sum_probs=37.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc-cccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~-~~Gg~~~ 70 (283)
.+||+|||||++|+.||.+|+++|++|+|+|+.+ .+||.+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 5899999999999999999999999999999986 4788765
No 75
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.21 E-value=1.4e-06 Score=83.17 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=41.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF 72 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~ 72 (283)
..+||+|||+|.+|+.+|..|++.|++|+++|+++..||+..+.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~ 46 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL 46 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence 46899999999999999999999999999999999999998864
No 76
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.21 E-value=1.6e-06 Score=83.15 Aligned_cols=40 Identities=28% Similarity=0.524 Sum_probs=37.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
++||+|||||++|+.||.+|++.|++|+|+|+ +.+||.+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~ 40 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCL 40 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 37999999999999999999999999999999 88999765
No 77
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.21 E-value=1.5e-06 Score=79.20 Aligned_cols=35 Identities=54% Similarity=0.797 Sum_probs=32.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg 67 (283)
||+|||||++|+++|+.|+++|++|+|+|++ .+++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~-~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG-DIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS-STTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec-cccc
Confidence 7999999999999999999999999999999 4444
No 78
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.21 E-value=3.7e-06 Score=79.02 Aligned_cols=39 Identities=31% Similarity=0.522 Sum_probs=35.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEccccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGK 68 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~~Gg~ 68 (283)
++||+|||||++|+++|+.|+++ |++|+|+|+.+.+|+.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~ 42 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARH 42 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccccc
Confidence 47999999999999999999999 9999999999877654
No 79
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.21 E-value=1.7e-06 Score=82.59 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=37.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc-ccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF-IGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~-~Gg~~~ 70 (283)
.+||+|||||++|++||..|++.|++|+|+|+.+. +||...
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 58999999999999999999999999999999874 688643
No 80
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.21 E-value=1.5e-06 Score=82.94 Aligned_cols=39 Identities=33% Similarity=0.620 Sum_probs=36.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEcccccccccee
Q 023386 32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVG 70 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G-~~V~vlE~~~~~Gg~~~ 70 (283)
||+|||+|++||+||+.++++| .+|+|+||.+..||+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~ 40 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSA 40 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCccc
Confidence 7999999999999999999999 99999999999888754
No 81
>PRK09126 hypothetical protein; Provisional
Probab=98.20 E-value=1.6e-06 Score=81.22 Aligned_cols=35 Identities=31% Similarity=0.533 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.+||+|||||++|+++|+.|+++|++|+|+||.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 58999999999999999999999999999999875
No 82
>PRK07236 hypothetical protein; Provisional
Probab=98.20 E-value=1.7e-06 Score=81.08 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=34.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
++.++|+|||||++||++|+.|++.|++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4568999999999999999999999999999999874
No 83
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.19 E-value=1.9e-06 Score=83.01 Aligned_cols=42 Identities=38% Similarity=0.425 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.++||+|||||++|+.||..|++.|++|+|+|+.+.+||.+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 368999999999999999999999999999999888999754
No 84
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.19 E-value=1.9e-06 Score=88.95 Aligned_cols=42 Identities=43% Similarity=0.645 Sum_probs=39.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..++|+|||||++||+||+.|+++|++|+|+|+.+.+||.+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK 579 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee
Confidence 368999999999999999999999999999999999999865
No 85
>PRK06847 hypothetical protein; Provisional
Probab=98.19 E-value=2e-06 Score=79.90 Aligned_cols=35 Identities=37% Similarity=0.543 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.+||+|||||++||++|+.|++.|++|+|+|+.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 57999999999999999999999999999999875
No 86
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.19 E-value=2e-06 Score=82.59 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=37.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc--ccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF--IGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~--~Gg~~~ 70 (283)
...||+|||+|++||+||+.|+++|.+|+|+||.+. .||...
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~ 46 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSR 46 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccc
Confidence 357999999999999999999999999999999984 677543
No 87
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.18 E-value=2e-06 Score=82.53 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=36.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.+||+|||||++|+.||..|++.|++|+|+|+. .+||.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 589999999999999999999999999999995 5898765
No 88
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.18 E-value=2.1e-06 Score=83.60 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=36.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~ 68 (283)
..+||+|||||++|+++|+.|+++|++|+|+||++..+|.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASAT 44 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 4689999999999999999999999999999999876554
No 89
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.18 E-value=2.9e-06 Score=85.10 Aligned_cols=42 Identities=40% Similarity=0.604 Sum_probs=39.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..++|+|||+|++||+||+.|++.|++|+|||+.+.+||.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 357999999999999999999999999999999999999754
No 90
>PRK06116 glutathione reductase; Validated
Probab=98.17 E-value=2e-06 Score=82.32 Aligned_cols=40 Identities=25% Similarity=0.464 Sum_probs=37.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.+||+|||||++|+.||..|+++|++|+|+|+. .+||.+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 589999999999999999999999999999996 7898754
No 91
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.17 E-value=2.2e-06 Score=82.20 Aligned_cols=41 Identities=34% Similarity=0.468 Sum_probs=37.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..+||+|||||++|++||.+|++.|++|+|+|+ +.+||.+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 358999999999999999999999999999999 67898765
No 92
>PRK07045 putative monooxygenase; Reviewed
Probab=98.17 E-value=1.9e-06 Score=80.65 Aligned_cols=37 Identities=32% Similarity=0.417 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
..+||+|||||++||++|+.|+++|++|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 3579999999999999999999999999999998864
No 93
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.17 E-value=2.2e-06 Score=82.30 Aligned_cols=41 Identities=32% Similarity=0.511 Sum_probs=37.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~ 71 (283)
.+||+|||||++|+.||..|+++|++|+|+|+.+ +||.+..
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 5899999999999999999999999999999987 8997653
No 94
>PRK06753 hypothetical protein; Provisional
Probab=98.17 E-value=2e-06 Score=79.93 Aligned_cols=35 Identities=46% Similarity=0.859 Sum_probs=33.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
++|+|||||++||++|+.|+++|++|+|+|+.+.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 48999999999999999999999999999999864
No 95
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.16 E-value=2.3e-06 Score=80.15 Aligned_cols=34 Identities=32% Similarity=0.638 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.+||+|||||++|+++|+.|+++|++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4799999999999999999999999999999875
No 96
>PRK06370 mercuric reductase; Validated
Probab=98.16 E-value=2.4e-06 Score=82.05 Aligned_cols=42 Identities=29% Similarity=0.457 Sum_probs=37.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
+..+||+|||||++|+.||.+|++.|++|+|+|+. .+||.+.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 34689999999999999999999999999999986 5677654
No 97
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.16 E-value=2.6e-06 Score=82.08 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=38.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~ 71 (283)
..+||+|||||++|+.||.+|++.|++|+|+|+. .+||.+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 3689999999999999999999999999999996 78998753
No 98
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.15 E-value=3.5e-06 Score=80.87 Aligned_cols=42 Identities=31% Similarity=0.377 Sum_probs=37.6
Q ss_pred CCcEEEECCCHHHHHHHHHH-HHCCCcEEEEccccccccceee
Q 023386 30 KLKVAIIGAGLAGMSTAVEL-LDQGHEVDIYESRSFIGGKVGS 71 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l-~~~G~~V~vlE~~~~~Gg~~~~ 71 (283)
.++|+|||+|++||.||.++ ++.|++|+|||+.+.+||.+..
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 47899999999999999975 4679999999999999998763
No 99
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.15 E-value=3.9e-06 Score=80.45 Aligned_cols=42 Identities=45% Similarity=0.660 Sum_probs=38.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..++|+|||+|++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 358999999999999999999999999999999999998754
No 100
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.15 E-value=2.3e-06 Score=80.30 Aligned_cols=32 Identities=34% Similarity=0.484 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~ 62 (283)
+||+|||||++|++||+.|++.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 58999999999999999999999999999997
No 101
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.15 E-value=2.2e-06 Score=79.70 Aligned_cols=34 Identities=24% Similarity=0.532 Sum_probs=32.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
||+|||||++||++|+.|+++|++|+|+||.+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 7999999999999999999999999999999864
No 102
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.14 E-value=2.7e-06 Score=78.98 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
+++||+|||||++|+++|+.|+++|++|+|+|+....
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~ 38 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP 38 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 3589999999999999999999999999999998754
No 103
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.14 E-value=1.1e-05 Score=76.10 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=35.9
Q ss_pred CCCCCCCCCCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEcccccc
Q 023386 21 PEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQ-GH-EVDIYESRSFI 65 (283)
Q Consensus 21 ~~~~~~~~~~~~v~IIGgG~aGl~aA~~l~~~-G~-~V~vlE~~~~~ 65 (283)
.+.+....+.+||+|||||++|+++|++|+++ |. +|+|+|+....
T Consensus 21 ~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~ 67 (407)
T TIGR01373 21 AWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG 67 (407)
T ss_pred ccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc
Confidence 34433333468999999999999999999995 85 99999998643
No 104
>PRK08013 oxidoreductase; Provisional
Probab=98.14 E-value=2.6e-06 Score=80.26 Aligned_cols=35 Identities=31% Similarity=0.529 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.+||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 57999999999999999999999999999999876
No 105
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.13 E-value=3.2e-06 Score=81.35 Aligned_cols=41 Identities=24% Similarity=0.469 Sum_probs=37.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..+||+|||||++|+.||.+|++.|++|+|+|++ .+||.+.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~ 43 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCL 43 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence 3589999999999999999999999999999985 6788765
No 106
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.13 E-value=2.8e-06 Score=79.64 Aligned_cols=37 Identities=30% Similarity=0.492 Sum_probs=34.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
..+||+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~ 41 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP 41 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence 3589999999999999999999999999999998753
No 107
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.13 E-value=3.1e-06 Score=88.44 Aligned_cols=41 Identities=39% Similarity=0.652 Sum_probs=38.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.++|+|||||++||+||++|+++|++|+|||+.+.+||.+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 57999999999999999999999999999999999999764
No 108
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.12 E-value=3.3e-06 Score=78.60 Aligned_cols=38 Identities=37% Similarity=0.603 Sum_probs=35.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
+++||+|||||++|+++|++|+++|.+|+|+|+....+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 46899999999999999999999999999999988655
No 109
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.12 E-value=3.1e-06 Score=79.10 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=34.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
..+||+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 3579999999999999999999999999999998754
No 110
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.12 E-value=3.6e-06 Score=82.85 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=36.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.+||+|||||++||+||..|+++|++|+|+|++ ..||.+.
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~ 43 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT 43 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence 589999999999999999999999999999996 6788765
No 111
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.12 E-value=3.4e-06 Score=81.96 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=35.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg 67 (283)
..+||+|||||++|+++|+.|+++|++|+|+||++..+|
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~G 43 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQG 43 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence 358999999999999999999999999999999976554
No 112
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.11 E-value=2.8e-06 Score=79.99 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.+||+|||||++||++|+.|+++|++|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 4799999999999999999999999999999987
No 113
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.11 E-value=3.1e-06 Score=79.11 Aligned_cols=37 Identities=38% Similarity=0.614 Sum_probs=34.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~ 68 (283)
||+|||||++|+++|+.|++.|++|+|+|+++.+|+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 7999999999999999999999999999999877653
No 114
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.11 E-value=3.3e-06 Score=78.85 Aligned_cols=36 Identities=33% Similarity=0.546 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.+||+|||||++||++|+.|++.|++|+|+|+.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 479999999999999999999999999999998775
No 115
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.11 E-value=4.7e-06 Score=84.85 Aligned_cols=42 Identities=40% Similarity=0.601 Sum_probs=39.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..++|+|||||++||+||..|+++|++|+|||+.+.+||.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 467999999999999999999999999999999999998764
No 116
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.10 E-value=3.1e-06 Score=79.18 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=32.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC---CCcEEEEccc
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQ---GHEVDIYESR 62 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~---G~~V~vlE~~ 62 (283)
|+++||+|||||++|+++|+.|++. |++|+|||+.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 3568999999999999999999998 9999999995
No 117
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=3.7e-06 Score=76.50 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF 72 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~ 72 (283)
..+||+|||||++||+||++++++++++.|++....+||....+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~ 45 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKT 45 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccc
Confidence 36899999999999999999999999944444445567776544
No 118
>PRK10262 thioredoxin reductase; Provisional
Probab=98.10 E-value=4.3e-06 Score=76.38 Aligned_cols=42 Identities=24% Similarity=0.288 Sum_probs=37.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
+..+||+|||||++||+||..|+++|++|+++|+. ..||.+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~ 45 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT 45 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCcee
Confidence 34689999999999999999999999999999965 5788765
No 119
>PRK06184 hypothetical protein; Provisional
Probab=98.09 E-value=3.8e-06 Score=81.56 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
..+||+|||||++||++|..|++.|++|+|+||.+.+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3589999999999999999999999999999998765
No 120
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.09 E-value=3.6e-06 Score=79.13 Aligned_cols=35 Identities=40% Similarity=0.440 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.+||+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47999999999999999999999999999999884
No 121
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.09 E-value=4.2e-06 Score=82.22 Aligned_cols=41 Identities=37% Similarity=0.621 Sum_probs=38.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc--cccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS--FIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~--~~Gg~~~ 70 (283)
..||+|||+|.+||+||+.+++.|.+|+||||.+ ..||...
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 5799999999999999999999999999999999 7888754
No 122
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.09 E-value=4.2e-06 Score=80.40 Aligned_cols=39 Identities=28% Similarity=0.524 Sum_probs=36.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
+||+|||||++|+.||..|++.|++|+|+|+.+ +||.+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 699999999999999999999999999999976 788754
No 123
>PRK05868 hypothetical protein; Validated
Probab=98.08 E-value=4e-06 Score=78.35 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
++||+|||||++||++|+.|+++|++|+|+|+.+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 469999999999999999999999999999998764
No 124
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.08 E-value=4e-06 Score=79.08 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=32.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
+||+|||||++|++||+.|+++|++|+|+|+.+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~ 35 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN 35 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 58999999999999999999999999999998653
No 125
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.08 E-value=6.5e-06 Score=79.33 Aligned_cols=42 Identities=36% Similarity=0.538 Sum_probs=39.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
+.++|+|||+|++||++|..|++.|++|+|+|+.+.+||.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999764
No 126
>PLN02661 Putative thiazole synthesis
Probab=98.08 E-value=3.9e-06 Score=77.43 Aligned_cols=40 Identities=40% Similarity=0.507 Sum_probs=36.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEccccccccce
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGGKV 69 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~-G~~V~vlE~~~~~Gg~~ 69 (283)
..||+|||||++||+||+.|++. |++|+|+|++..+||..
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence 47999999999999999999986 89999999999988743
No 127
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.07 E-value=4.6e-06 Score=77.33 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=32.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+||+|||||++|+++|++|+++|++|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999874
No 128
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.07 E-value=5e-06 Score=81.05 Aligned_cols=40 Identities=25% Similarity=0.479 Sum_probs=37.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..||+|||+| +||+||+++++.|.+|+|+||.+..||...
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 6799999999 999999999999999999999999888653
No 129
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.06 E-value=5.8e-06 Score=79.46 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~ 64 (283)
...||+|||||++|+++|++|+++ |.+|+|||++..
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 357999999999999999999998 899999999754
No 130
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.06 E-value=7e-06 Score=82.11 Aligned_cols=41 Identities=41% Similarity=0.620 Sum_probs=38.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.++|+|||+|++||++|+.|++.|++|+|||+.+.+||.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 68999999999999999999999999999999999998754
No 131
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.06 E-value=6.4e-06 Score=79.09 Aligned_cols=42 Identities=43% Similarity=0.653 Sum_probs=38.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..++|+|||||++||++|..|+++|++|+|+|+.+.+||.+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 357999999999999999999999999999999999998754
No 132
>PRK07588 hypothetical protein; Provisional
Probab=98.05 E-value=4.5e-06 Score=78.21 Aligned_cols=35 Identities=43% Similarity=0.521 Sum_probs=32.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
+||+|||||++||++|+.|++.|++|+|+|+.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 48999999999999999999999999999998764
No 133
>PRK07538 hypothetical protein; Provisional
Probab=98.05 E-value=4.5e-06 Score=78.91 Aligned_cols=35 Identities=34% Similarity=0.636 Sum_probs=32.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
+||+|||||++||++|+.|+++|++|+|+|+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 48999999999999999999999999999998764
No 134
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.05 E-value=5.9e-06 Score=79.11 Aligned_cols=42 Identities=40% Similarity=0.616 Sum_probs=39.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~ 71 (283)
.++|+|||+|++||.||..|++.|++|+|+|+.+.+||++..
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 589999999999999999999999999999999999998763
No 135
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.05 E-value=6e-06 Score=79.65 Aligned_cols=42 Identities=38% Similarity=0.655 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..++|+|||+|++||++|..|++.|++|+|+|+.+.+||.+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 357999999999999999999999999999999999998754
No 136
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.05 E-value=5.6e-06 Score=81.76 Aligned_cols=42 Identities=29% Similarity=0.499 Sum_probs=39.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~ 71 (283)
..||+|||+|++||+||+.++++|++|+|+||.+..||....
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF 50 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence 679999999999999999999999999999999999987543
No 137
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.04 E-value=4.6e-06 Score=75.11 Aligned_cols=170 Identities=18% Similarity=0.212 Sum_probs=103.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeee-ecCCCceeeccceeeccCChHHHHHHHHHHHHHHHHH
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF-IDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQL 109 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~-~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (283)
..|+|||+|.+||+|+..+...|-.|+++|++..+||+-.-. .+.+|.+.+...+....
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~-------------------- 69 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIK-------------------- 69 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccc--------------------
Confidence 479999999999999999999988899999999999985321 11223322221110000
Q ss_pred HHhhcceeecCCCceEEeecceecCCCceeecCCceeEEEEEcCCCCCCCCChHHHHHHHcccccccCCCCcc-cccccc
Q 023386 110 RQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVLALFPLPQG-LEVIWS 188 (283)
Q Consensus 110 ~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~vla~gg~~~~~~~~eLa~~lg~~i~~~~P~l~~-l~~~~~ 188 (283)
| +|+-|+.+. +..+.. ....+|++.+..+......|+.+ +.++..
T Consensus 70 -------------------D----sp~lf~~Dt--------l~saks---k~~~eLm~~La~~S~~AvewL~~ef~lkld 115 (477)
T KOG2404|consen 70 -------------------D----SPELFVKDT--------LSSAKS---KGVPELMEKLAANSASAVEWLRGEFDLKLD 115 (477)
T ss_pred -------------------c----ChHHHhhhh--------hhhccc---CCcHHHHHHHHhcCHHHHHHHhhhcccchH
Confidence 0 111122211 111111 25668999999888888889865 677666
Q ss_pred ceEeecccccccCCCCCCCCCCCCCCCCcEEEec---cccccCCC-CcchhHHHHHHHHHHHHHHhccchHHHHHHH
Q 023386 189 SFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAG---SYTKQDYI-DSMEGPTLSDRQASAYICNAGEELVALRKQL 261 (283)
Q Consensus 189 ~vv~~~~a~~~~~Pg~~~~rp~~~t~~~~l~iaG---d~t~~~~~-~t~ega~~~g~~aA~~il~~~g~v~g~~~~~ 261 (283)
.+-+-++++.+|+ ||-.. |++-.|-.= --.+.+.. +.=|-..+..+.....|++.+|+|.||.-..
T Consensus 116 ~la~lgGHSvpRT-----Hr~s~--plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd 185 (477)
T KOG2404|consen 116 LLAQLGGHSVPRT-----HRSSG--PLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMD 185 (477)
T ss_pred HHHHhcCCCCCcc-----cccCC--CCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEc
Confidence 7778889999998 76653 333322100 00001111 1113455566667777888889998887653
No 138
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.04 E-value=7.1e-06 Score=82.24 Aligned_cols=42 Identities=45% Similarity=0.717 Sum_probs=39.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..++|+|||||++||++|+.|++.|++|+|+|+.+.+||.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 357999999999999999999999999999999999999764
No 139
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.04 E-value=4.4e-06 Score=77.80 Aligned_cols=34 Identities=35% Similarity=0.536 Sum_probs=31.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEcccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFI 65 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G-~~V~vlE~~~~~ 65 (283)
||+|||||++|+++|+.|+++| ++|+|+|+.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 7999999999999999999999 999999998653
No 140
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.04 E-value=5.4e-06 Score=78.18 Aligned_cols=34 Identities=29% Similarity=0.573 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~ 62 (283)
..+||+|||||++||++|..|++.|++|+|+|+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3579999999999999999999999999999996
No 141
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.04 E-value=0.00012 Score=69.95 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
..+|+|||||..|+-+|..+++.|.+|+|+++.+++.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 3689999999999999999999999999999987654
No 142
>PTZ00058 glutathione reductase; Provisional
Probab=98.04 E-value=7.4e-06 Score=80.58 Aligned_cols=41 Identities=24% Similarity=0.435 Sum_probs=37.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..+||+|||||++|+.||..+++.|++|+|+|++ .+||...
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl 87 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV 87 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence 4689999999999999999999999999999996 6898765
No 143
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.04 E-value=7.1e-06 Score=87.13 Aligned_cols=42 Identities=33% Similarity=0.548 Sum_probs=38.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
...||+|||+|.+||+||+.+++.|.+|+|+||.+..||...
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 358999999999999999999999999999999999998754
No 144
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.03 E-value=8.8e-06 Score=81.25 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=36.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccce
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~ 69 (283)
..||+|||+|+|||+||+.+++.|.+|+|+||.+..+|..
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s 89 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT 89 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCch
Confidence 4699999999999999999999999999999998777643
No 145
>PRK06185 hypothetical protein; Provisional
Probab=98.03 E-value=5.7e-06 Score=77.88 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
..+||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 358999999999999999999999999999999864
No 146
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.03 E-value=6e-05 Score=71.88 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
..+|+|||||.+|+-+|..+.+.|.+|+++++.+++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 184 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI 184 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 368999999999999999999999999999987754
No 147
>PRK14694 putative mercuric reductase; Provisional
Probab=98.03 E-value=6.6e-06 Score=79.23 Aligned_cols=41 Identities=32% Similarity=0.550 Sum_probs=37.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..+||+|||||++|+.||..|++.|++|+|+|+. .+||.+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 4689999999999999999999999999999996 6898765
No 148
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.03 E-value=5.1e-06 Score=77.75 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.+||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 5899999999999999999999999999999986
No 149
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.03 E-value=5.7e-06 Score=77.69 Aligned_cols=33 Identities=42% Similarity=0.645 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~ 62 (283)
.+||+|||||++||++|..|++.|++|+|+|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 579999999999999999999999999999998
No 150
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.02 E-value=6.8e-06 Score=80.72 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg 67 (283)
.+||+|||||+.|+++|+.|+++|++|+|+|+++...|
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~G 43 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATG 43 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCC
Confidence 58999999999999999999999999999999875443
No 151
>PRK08244 hypothetical protein; Provisional
Probab=98.02 E-value=6.1e-06 Score=79.89 Aligned_cols=36 Identities=33% Similarity=0.359 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.+||+|||||++||++|..|++.|++|+|+||.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 479999999999999999999999999999998753
No 152
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.02 E-value=5.6e-06 Score=77.29 Aligned_cols=34 Identities=38% Similarity=0.660 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
+.||+|||||++|+++|+.|++.|++|+|+|+.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 3699999999999999999999999999999874
No 153
>PRK14727 putative mercuric reductase; Provisional
Probab=98.02 E-value=7.2e-06 Score=79.26 Aligned_cols=43 Identities=37% Similarity=0.567 Sum_probs=39.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~ 71 (283)
..+||+|||+|++|+.+|+.|++.|.+|+|+|+.+.+||.+..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 4689999999999999999999999999999999889998763
No 154
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.02 E-value=0.0001 Score=75.84 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++++|||||..|+-+|..|++.|.+|+|+|..+.+
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l 180 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML 180 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 368999999999999999999999999999998764
No 155
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.02 E-value=6.4e-06 Score=77.55 Aligned_cols=36 Identities=39% Similarity=0.529 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
+.+|+|||||++||++|+.|+++|++|+|+|+.+..
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 378999999999999999999999999999998764
No 156
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.02 E-value=6.1e-06 Score=77.51 Aligned_cols=35 Identities=40% Similarity=0.438 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
..||+|||||++||++|+.|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47999999999999999999999999999999975
No 157
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.01 E-value=6.6e-06 Score=81.49 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=36.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccce
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~ 69 (283)
..||+|||+|++||+||+.+++.|.+|+|+||.+..||..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s 42 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHS 42 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence 4699999999999999999999999999999998876643
No 158
>PLN02463 lycopene beta cyclase
Probab=98.01 E-value=1.3e-05 Score=76.82 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=33.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
...+||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 3468999999999999999999999999999999764
No 159
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.00 E-value=7.7e-06 Score=85.57 Aligned_cols=42 Identities=29% Similarity=0.450 Sum_probs=39.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~ 71 (283)
.+||+|||||++||+||+.+++.|++|+|+|+.+.+||.+..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 579999999999999999999999999999999999998763
No 160
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.00 E-value=5.9e-06 Score=77.55 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G--~~V~vlE~~~~ 64 (283)
++||+|||||++||++|+.|+++| ++|+|+|+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 479999999999999999999996 99999999865
No 161
>PRK07190 hypothetical protein; Provisional
Probab=98.00 E-value=7.1e-06 Score=79.49 Aligned_cols=36 Identities=28% Similarity=0.159 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.+||+|||||++||++|+.|+++|.+|+|+||.+.+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 579999999999999999999999999999999764
No 162
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.00 E-value=0.00011 Score=75.22 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++++|||||.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL 175 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence 368999999999999999999999999999988765
No 163
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.00 E-value=0.00019 Score=68.83 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=34.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg 67 (283)
.++++|||||..|+-.|..+++.|.+|+|+|+.+++..
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 46899999999999999999999999999999988643
No 164
>PRK11445 putative oxidoreductase; Provisional
Probab=98.00 E-value=6.4e-06 Score=76.32 Aligned_cols=35 Identities=31% Similarity=0.322 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
++||+|||||++|+++|+.|++. ++|+|+|+.+..
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 47999999999999999999999 999999998753
No 165
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.00 E-value=6.6e-06 Score=77.58 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=33.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg 67 (283)
+||+|||||++|+++|++|+++|++|+|+|+...++.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~ 37 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPAL 37 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhh
Confidence 4899999999999999999999999999999866554
No 166
>PLN02985 squalene monooxygenase
Probab=97.99 E-value=7.9e-06 Score=79.66 Aligned_cols=39 Identities=28% Similarity=0.378 Sum_probs=34.7
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 26 ~~~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.....+||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 334568999999999999999999999999999999753
No 167
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.99 E-value=1.1e-05 Score=82.94 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=35.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~ 68 (283)
..++|+|||+|++||+||++|+++|++|+|+|+.+..|+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 3689999999999999999999999999999998765543
No 168
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.99 E-value=0.00016 Score=68.68 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++|+|||||.+|+.+|..+++.|.+|+++++.+.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 368999999999999999999999999999988765
No 169
>PRK06126 hypothetical protein; Provisional
Probab=97.98 E-value=8.3e-06 Score=79.97 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
..++|+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 358999999999999999999999999999999875
No 170
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.97 E-value=8.7e-06 Score=78.56 Aligned_cols=41 Identities=29% Similarity=0.502 Sum_probs=36.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc------cccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES------RSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~------~~~~Gg~~~ 70 (283)
.+|++|||||++|+.||+++++.|.+|+|+|+ ...+||.+.
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~ 50 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL 50 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc
Confidence 58999999999999999999999999999998 355666654
No 171
>PRK13748 putative mercuric reductase; Provisional
Probab=97.97 E-value=8.1e-06 Score=80.29 Aligned_cols=40 Identities=40% Similarity=0.609 Sum_probs=37.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.+||+|||||++|+.||..|++.|++|+|+|++ .+||.+.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 589999999999999999999999999999997 7899865
No 172
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.97 E-value=1e-05 Score=80.05 Aligned_cols=40 Identities=25% Similarity=0.521 Sum_probs=37.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccce
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~ 69 (283)
..||+|||+|.+||+||+.++++|.+|+||||.+..||..
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 5799999999999999999999999999999999988853
No 173
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.96 E-value=8.7e-06 Score=76.98 Aligned_cols=36 Identities=39% Similarity=0.723 Sum_probs=32.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CcEEEEccccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIG 66 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G-~~V~vlE~~~~~G 66 (283)
.+|+|||||++||++|+.|+++| .+|+||||.+.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 47999999999999999999998 5999999988753
No 174
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.96 E-value=1.3e-05 Score=78.97 Aligned_cols=41 Identities=29% Similarity=0.601 Sum_probs=38.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..+||+|||+| +||+||+.+++.|.+|+|+||.+.+||...
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 36899999999 899999999999999999999999999755
No 175
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.96 E-value=9.2e-06 Score=78.95 Aligned_cols=41 Identities=27% Similarity=0.501 Sum_probs=36.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc--------cccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS--------FIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~--------~~Gg~~~ 70 (283)
.+||+|||||++|+.||..|++.|++|+|+|+++ .+||.+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~ 53 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCV 53 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceec
Confidence 5899999999999999999999999999999732 4787754
No 176
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.95 E-value=1.7e-05 Score=77.88 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
..+||+|||||++||++|+.|++.|++|+|+|+.+.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 3579999999999999999999999999999999864
No 177
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.94 E-value=9.4e-06 Score=80.05 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=35.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccce
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~ 69 (283)
||+|||+|++||+||+.+++.|.+|+|+||.+..||..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s 38 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT 38 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 79999999999999999999999999999998876653
No 178
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.94 E-value=9.7e-06 Score=81.41 Aligned_cols=38 Identities=34% Similarity=0.544 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg 67 (283)
.+||+|||||++|+++|++|+++|++|+|+|+...+|.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~ 297 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQ 297 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccc
Confidence 46999999999999999999999999999999876543
No 179
>PRK06834 hypothetical protein; Provisional
Probab=97.93 E-value=1.2e-05 Score=78.04 Aligned_cols=35 Identities=37% Similarity=0.423 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.+||+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 58999999999999999999999999999999875
No 180
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.93 E-value=1.1e-05 Score=79.24 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=36.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccce
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~ 69 (283)
..||+|||+|.+||+||+.+++.|.+|+|+||.+..||..
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s 55 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGST 55 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCch
Confidence 5899999999999999999999999999999999877643
No 181
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.92 E-value=1.2e-05 Score=77.58 Aligned_cols=35 Identities=37% Similarity=0.639 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
++||+|||+|++||+||+.+++.|.+|+|+||.+.
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 37999999999999999999999999999999864
No 182
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.92 E-value=1.1e-05 Score=80.61 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=35.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~ 68 (283)
..||+|||+|+|||+||+.+++.|.+|+|+||.+..||.
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~ 46 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH 46 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence 579999999999999999999999999999999876553
No 183
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.92 E-value=1.8e-05 Score=78.01 Aligned_cols=43 Identities=40% Similarity=0.635 Sum_probs=39.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.+.++|+|||+|++||++|+.|++.|++|+|+|+.+.+||.+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 3468999999999999999999999999999999999998654
No 184
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.91 E-value=1.4e-05 Score=79.15 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=36.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~ 68 (283)
..||+|||+|.|||+||+.+++.|.+|+|+||....+|.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 579999999999999999999999999999999877664
No 185
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.91 E-value=1.2e-05 Score=79.68 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=36.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..||+|||+|.+||+||+.+++.|.+|+|+||.+..+|...
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~ 52 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTV 52 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCch
Confidence 57999999999999999999999999999999987666543
No 186
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.91 E-value=1.6e-05 Score=77.82 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=35.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
+..+||+|||||++||++|..|++.|++|+|+|+.+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 446899999999999999999999999999999998653
No 187
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.91 E-value=1.4e-05 Score=78.66 Aligned_cols=41 Identities=32% Similarity=0.519 Sum_probs=38.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.+||+|||+|.+||+||+.+++.|.+|+|+|+.+..||...
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~ 46 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTA 46 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceec
Confidence 57999999999999999999999999999999998888643
No 188
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.91 E-value=1.4e-05 Score=79.82 Aligned_cols=38 Identities=29% Similarity=0.566 Sum_probs=35.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg 67 (283)
.+||+|||||+.|+++|+.|+++|++|+|+|+++..+|
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 48999999999999999999999999999999976655
No 189
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.90 E-value=1.4e-05 Score=79.68 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=37.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..||+|||+|.+||+||+.+++.|.+|+|+||.+..+|...
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~ 69 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTV 69 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCch
Confidence 57999999999999999999999999999999988777543
No 190
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.90 E-value=1.1e-05 Score=76.92 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHH----CCCcEEEEcccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLD----QGHEVDIYESRS 63 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~----~G~~V~vlE~~~ 63 (283)
+||+|||||++|+++|+.|++ .|++|+|+|+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 589999999999999999998 899999999943
No 191
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.90 E-value=1.5e-05 Score=75.47 Aligned_cols=36 Identities=42% Similarity=0.616 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
++||+|||||++|+.||+.|+++|++|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 469999999999999999999999999999986654
No 192
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.90 E-value=1.3e-05 Score=74.93 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=34.5
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEEccccccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGK 68 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~~Gg~ 68 (283)
||+|||||++||++|+.|++. |++|+|+|+.+.+||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 799999999999999999987 9999999999988774
No 193
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.90 E-value=1.3e-05 Score=78.99 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=36.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..||+|||+|.+||+||+.+++.|.+|+|+||.+..+|...
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~ 45 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSA 45 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcch
Confidence 47999999999999999999999999999999987776543
No 194
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=97.89 E-value=1.8e-05 Score=74.16 Aligned_cols=58 Identities=40% Similarity=0.761 Sum_probs=49.3
Q ss_pred HHHHHHHHCCCcEEEEccccccccceeeeecCC-CceeeccceeeccCChHHHHHHHHH
Q 023386 44 STAVELLDQGHEVDIYESRSFIGGKVGSFIDKH-GNHIEMGLHIFFGCYNNLFRLMKKF 101 (283)
Q Consensus 44 ~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~~~~-g~~~~~g~~~~~~~~~~~~~~~~~~ 101 (283)
+||+.|+++|++|+|||+++++||++.++...+ +..++.|+|++++.++++.++++++
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~l 59 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRI 59 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHh
Confidence 489999999999999999999999998875322 3459999999998888888877765
No 195
>PRK06370 mercuric reductase; Validated
Probab=97.89 E-value=0.00024 Score=68.30 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
.++|+|||+|..|+-+|..+++.|.+|+++|+.+.+.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 207 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL 207 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence 3789999999999999999999999999999988764
No 196
>PRK12839 hypothetical protein; Provisional
Probab=97.89 E-value=1.8e-05 Score=78.23 Aligned_cols=41 Identities=32% Similarity=0.484 Sum_probs=38.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..||+|||+|.+||+||+.++++|.+|+|+||++.+||...
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 68999999999999999999999999999999999998754
No 197
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.89 E-value=1.4e-05 Score=79.76 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.+..+|+|||||++||++|+.|+++|++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 356899999999999999999999999999999975
No 198
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.89 E-value=2.2e-05 Score=76.10 Aligned_cols=41 Identities=37% Similarity=0.592 Sum_probs=38.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.++|+|||+|++||.||..|++.|++|+|+|+.+.+||.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 47999999999999999999999999999999999998764
No 199
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.89 E-value=1.6e-05 Score=78.34 Aligned_cols=41 Identities=27% Similarity=0.501 Sum_probs=37.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..||+|||+|.+|++||+.+++.|++|+|+||.+.+||...
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 57999999999999999999999999999999998887543
No 200
>PLN02507 glutathione reductase
Probab=97.88 E-value=1.6e-05 Score=77.37 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=36.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc---------cccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES---------RSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~---------~~~~Gg~~~ 70 (283)
.+||+|||||++|+.||.++++.|++|+|+|+ .+.+||.+.
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~ 74 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCV 74 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceee
Confidence 58999999999999999999999999999996 356888765
No 201
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.88 E-value=1.3e-05 Score=74.57 Aligned_cols=42 Identities=36% Similarity=0.516 Sum_probs=36.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC------CCcEEEEccccccccceee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ------GHEVDIYESRSFIGGKVGS 71 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~------G~~V~vlE~~~~~Gg~~~~ 71 (283)
..||+|||||++||+||++|.+. .++|+|+||...+||.+.+
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 47999999999999999998753 4689999999999998763
No 202
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.88 E-value=1.5e-05 Score=78.56 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=35.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc-cccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIGG 67 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~-~~Gg 67 (283)
..+||+|||||+||+.||+.+++.|.+|.|+|++. .+|+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence 35899999999999999999999999999999984 5654
No 203
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.88 E-value=1.7e-05 Score=77.37 Aligned_cols=41 Identities=27% Similarity=0.411 Sum_probs=36.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
...+||+|||||++||+||..|++.|++|+|+|. ++||.+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 3468999999999999999999999999999974 5888764
No 204
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.88 E-value=1.5e-05 Score=79.72 Aligned_cols=38 Identities=32% Similarity=0.471 Sum_probs=34.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg 67 (283)
..||+|||+|.|||+||+.+++.|.+|+|+||+..+|+
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~ 72 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR 72 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 46999999999999999999999999999999877753
No 205
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.87 E-value=1.9e-05 Score=66.59 Aligned_cols=36 Identities=42% Similarity=0.467 Sum_probs=32.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg 67 (283)
||+|||||++||.||.+|++.+++|+|+|+.+..+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~ 36 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPY 36 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccc
Confidence 799999999999999999999999999998876443
No 206
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.87 E-value=1.6e-05 Score=78.68 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=37.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC---CcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG---HEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G---~~V~vlE~~~~~Gg~~~ 70 (283)
..||+|||+|+|||+||+.+++.| .+|+|+||.+..|+...
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~ 48 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSV 48 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCce
Confidence 479999999999999999999998 89999999998777544
No 207
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.86 E-value=2e-05 Score=76.86 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=36.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..+||+|||||++||+||.+|++.|++|+|++. ++||++.
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~ 249 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL 249 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence 368999999999999999999999999999976 4899875
No 208
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.86 E-value=2.5e-05 Score=72.44 Aligned_cols=41 Identities=44% Similarity=0.493 Sum_probs=38.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.++|+|||+|++|+.+|..|++.|++|+|+|+.+.+||.+.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 57999999999999999999999999999999999998764
No 209
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.86 E-value=1.5e-05 Score=78.70 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=35.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccccccce
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKV 69 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G--~~V~vlE~~~~~Gg~~ 69 (283)
..||+|||+|++||+||+.+++.| .+|+|+||.+..||..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s 44 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHS 44 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhh
Confidence 479999999999999999999874 8999999998777643
No 210
>PLN02507 glutathione reductase
Probab=97.86 E-value=0.00028 Score=68.60 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++|+|||||..|+-.|..+++.|.+|+|+++.+++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 368999999999999999999999999999988754
No 211
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.85 E-value=2.2e-05 Score=75.10 Aligned_cols=44 Identities=30% Similarity=0.423 Sum_probs=40.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceee
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~ 71 (283)
+..+|++|||+|++|..||+++++.|.+|.|+|+.+.+||.+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln 45 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN 45 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence 34699999999999999999999999999999999889998764
No 212
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.85 E-value=1.6e-05 Score=77.03 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=33.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEccccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG 66 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~~G 66 (283)
+||+|||||++|+++|+.|++. |.+|+|||+.+.+|
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a 38 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVA 38 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcch
Confidence 4899999999999999999997 99999999987665
No 213
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.85 E-value=0.00016 Score=69.50 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
.++|+|||+|.+|+.+|..+++.|.+|+|+|+.+++.
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 202 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL 202 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC
Confidence 3689999999999999999999999999999987653
No 214
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.84 E-value=0.00015 Score=69.65 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
.++|+|||||.+|+-.|..+++.|.+|+++|+.+++.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 3689999999999999999999999999999987754
No 215
>PTZ00367 squalene epoxidase; Provisional
Probab=97.84 E-value=2.1e-05 Score=77.50 Aligned_cols=34 Identities=32% Similarity=0.417 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.+||+|||||++|+++|+.|+++|++|+|+|+.+
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 5899999999999999999999999999999976
No 216
>PLN02697 lycopene epsilon cyclase
Probab=97.83 E-value=4e-05 Score=74.81 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
..+||+|||||++||++|+.|++.|++|+|+|+....
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~ 143 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF 143 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC
Confidence 4689999999999999999999999999999986443
No 217
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.83 E-value=1.9e-05 Score=75.48 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=35.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccce
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~ 69 (283)
..||+|||+|.+||+||+.++ .|.+|+|+||.+..||..
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s 42 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNT 42 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCch
Confidence 479999999999999999985 799999999999988764
No 218
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.82 E-value=0.00043 Score=68.24 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|+|||||.+|+-.|..|++.|.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 47899999999999999999999999999998764
No 219
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.82 E-value=2.3e-05 Score=77.04 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=36.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccce
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~ 69 (283)
....||+|||+|.|||+||+.++ .|.+|+|+||.+..||..
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s 47 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSAS 47 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCch
Confidence 34689999999999999999986 599999999999887753
No 220
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.82 E-value=3.7e-05 Score=76.08 Aligned_cols=42 Identities=36% Similarity=0.570 Sum_probs=39.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~ 71 (283)
.+||+|||+|++|++||+.++++|++|+|+||++.+||....
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence 579999999999999999999999999999999999998653
No 221
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.82 E-value=0.0004 Score=66.62 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
.++|+|||+|..|+.+|..+++.|.+|+++|+.+++.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 211 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL 211 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 4789999999999999999999999999999987653
No 222
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.82 E-value=2.1e-05 Score=78.09 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=35.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~ 68 (283)
..||+|||+|.+||+||+.+++.|.+|+|+||....+|.
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 579999999999999999999999999999998876665
No 223
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.81 E-value=3.2e-05 Score=76.59 Aligned_cols=42 Identities=33% Similarity=0.480 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..+||+|||+|.+|++||+.++++|++|+|+||++..||...
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 368999999999999999999999999999999998888754
No 224
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.81 E-value=2.2e-05 Score=76.04 Aligned_cols=39 Identities=36% Similarity=0.572 Sum_probs=35.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccce
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~ 69 (283)
..||+|||+|++||+||+.+++.|. |+|+||.+..||..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s 40 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNS 40 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcc
Confidence 3699999999999999999999998 99999998777653
No 225
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.81 E-value=2e-05 Score=73.72 Aligned_cols=34 Identities=35% Similarity=0.452 Sum_probs=32.1
Q ss_pred cEEEECCCHHHHHHHHHH--HHCCCcEEEEcccccc
Q 023386 32 KVAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFI 65 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l--~~~G~~V~vlE~~~~~ 65 (283)
||+|||||+|||++|++| ++.|++|+|+|+++..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 799999999999999999 8889999999998876
No 226
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.80 E-value=0.00065 Score=65.26 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++++|||||.+|+.+|..+++.|.+|+|+|+.+++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 368999999999999999999999999999998765
No 227
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.79 E-value=2.6e-05 Score=75.58 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=37.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEccc--------ccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESR--------SFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~-G~~V~vlE~~--------~~~Gg~~~ 70 (283)
..+||+|||+|++|+.||..+++. |++|+|+|+. ..+||...
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCl 52 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCV 52 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeec
Confidence 358999999999999999999997 9999999984 56888765
No 228
>PLN02815 L-aspartate oxidase
Probab=97.79 E-value=2.6e-05 Score=77.27 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=35.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccce
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~ 69 (283)
..||+|||+|.+||+||+.+++.| +|+|+||.+..||..
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s 67 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT 67 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence 579999999999999999999999 899999999888754
No 229
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.79 E-value=4.4e-05 Score=55.25 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=33.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
+|+|||||..|+-+|..+++.|.+|+|+++.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999999999876
No 230
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.79 E-value=2.7e-05 Score=72.33 Aligned_cols=36 Identities=39% Similarity=0.594 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
+.+|+|||||++||++|..|+++|.+|+|||+...+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 468999999999999999999999999999996553
No 231
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.78 E-value=4.6e-05 Score=76.17 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~-G~~V~vlE~~~~ 64 (283)
..+||+|||||++||++|..|++. |++|+|+|+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 367999999999999999999994 999999999865
No 232
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.78 E-value=2.5e-05 Score=75.75 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=34.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGG 67 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~~Gg 67 (283)
..+||+|||||+.|+++|+.|++. |.+|+|+||.+.+|.
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~ 44 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVAL 44 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhh
Confidence 357999999999999999999985 789999999987654
No 233
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.78 E-value=2.6e-05 Score=78.22 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=35.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~ 68 (283)
..||+|||+|.+||+||+.++++|.+|+|+||.+..++.
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~ 43 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSH 43 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 579999999999999999999999999999998876553
No 234
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.77 E-value=0.00023 Score=68.23 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++|+|||||.+|+.+|..+++.|.+|+++|+.+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 368999999999999999999999999999998765
No 235
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.77 E-value=0.00064 Score=65.47 Aligned_cols=36 Identities=33% Similarity=0.342 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
..+|+|||+|..|+.+|..+++.|.+|+|+|+.+++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 368999999999999999999999999999987764
No 236
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.77 E-value=3e-05 Score=73.63 Aligned_cols=36 Identities=39% Similarity=0.465 Sum_probs=32.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
.+|+|||||++|+.||+.|+++|++|+|+|+.+.++
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 379999999999999999999999999999877653
No 237
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.77 E-value=2.6e-05 Score=77.58 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGG 67 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~~Gg 67 (283)
..||+|||+|+|||+||+.+++. |.+|+|+||++..++
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s 50 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS 50 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence 47999999999999999999998 999999999986543
No 238
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.77 E-value=2.8e-05 Score=75.75 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=35.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccce
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~ 69 (283)
..||+|||+|.|||+||+.+++ |.+|+|+||.+..||..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 5799999999999999999976 89999999999877754
No 239
>PRK09897 hypothetical protein; Provisional
Probab=97.76 E-value=3.9e-05 Score=75.00 Aligned_cols=40 Identities=35% Similarity=0.487 Sum_probs=35.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccccccce
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKV 69 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G--~~V~vlE~~~~~Gg~~ 69 (283)
+++|+|||||++|+++|.+|.+.+ .+|+|||+++.+|..+
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ 42 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM 42 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence 368999999999999999998765 4899999999998554
No 240
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.76 E-value=0.00062 Score=65.30 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
.++|+|||+|.+|+-.|..+++.|.+|+++|+.+++.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 205 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL 205 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence 4789999999999999999999999999999987654
No 241
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.75 E-value=0.00063 Score=65.68 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=33.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
++++|||||..|+-.|..+++.|.+|+|+|+.+++.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il 210 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI 210 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 689999999999999999999999999999988753
No 242
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.75 E-value=3.1e-05 Score=79.01 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=32.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSF 64 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~ 64 (283)
++|+|||||++||++|+.|++. |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4899999999999999999998 899999999986
No 243
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.74 E-value=0.00049 Score=66.07 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++|+|||||.+|+-+|..+++.|.+|+++|+.+++
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 368999999999999999999999999999998875
No 244
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.74 E-value=3.4e-05 Score=73.07 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=38.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G--~~V~vlE~~~~~Gg~~~ 70 (283)
.++||+|||||+.|+++|+.|++.+ ++|+|+||.+.+|.-.+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS 45 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESS 45 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccc
Confidence 3689999999999999999999998 99999999999986544
No 245
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.73 E-value=2.7e-05 Score=70.08 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CcEEEEccccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIG 66 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G-~~V~vlE~~~~~G 66 (283)
+|++|||+|.+|..+|.+|++.| .+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 59999999999999999999997 6999999987744
No 246
>PRK07846 mycothione reductase; Reviewed
Probab=97.73 E-value=0.00061 Score=65.41 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
.++|+|||||..|+.+|..+++.|.+|+++|+.+++.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 3689999999999999999999999999999987653
No 247
>PRK06116 glutathione reductase; Validated
Probab=97.73 E-value=0.00034 Score=66.99 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++|+|||+|.+|+-+|..+++.|.+|+++++.+.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 368999999999999999999999999999987754
No 248
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.73 E-value=3.1e-05 Score=76.58 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=36.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~~Gg~~~ 70 (283)
..||+|||+|++||+||+.+++. |.+|+|+||.+..|+...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~ 45 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTV 45 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCch
Confidence 47999999999999999999987 589999999998888654
No 249
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.73 E-value=3.3e-05 Score=75.80 Aligned_cols=39 Identities=36% Similarity=0.478 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc-cccce
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF-IGGKV 69 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~-~Gg~~ 69 (283)
..||+|||+|.|||+||+.+ +.|.+|+|+||.+. .||..
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s 46 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCT 46 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccc
Confidence 47999999999999999999 99999999999875 45543
No 250
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.72 E-value=0.00029 Score=67.93 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=33.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg 67 (283)
.+++|||+|..|+-+|..+++.|.+|+++|+.+++..
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~ 214 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP 214 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC
Confidence 6899999999999999999999999999999877543
No 251
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.72 E-value=0.00098 Score=64.28 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++|+|||||.+|+.+|..+++.|.+|+|+|+.+++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 368999999999999999999999999999998765
No 252
>PLN02546 glutathione reductase
Probab=97.72 E-value=4e-05 Score=75.42 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES 61 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~ 61 (283)
.+||+|||+|++|+.||..|++.|++|+|+|+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 47999999999999999999999999999996
No 253
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.71 E-value=3.1e-05 Score=76.62 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=36.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~~Gg~~~ 70 (283)
..||+|||+|++||+||+.+++. |.+|+|+||.+..||...
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~ 46 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTV 46 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChh
Confidence 47999999999999999999987 479999999988777554
No 254
>PRK08275 putative oxidoreductase; Provisional
Probab=97.71 E-value=3.7e-05 Score=75.69 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~~G 66 (283)
..||+|||+|.|||+||+.+++. |.+|+|+||.+..+
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~ 47 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKR 47 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence 57999999999999999999987 68999999998743
No 255
>PRK13984 putative oxidoreductase; Provisional
Probab=97.71 E-value=5.5e-05 Score=75.22 Aligned_cols=42 Identities=48% Similarity=0.590 Sum_probs=39.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
+.++|+|||+|++|+++|..|+++|++|+|||+.+.+||.+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 467899999999999999999999999999999999998754
No 256
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.71 E-value=4.2e-05 Score=78.31 Aligned_cols=41 Identities=41% Similarity=0.660 Sum_probs=39.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.++|+|||.|++||.||-+|-+.||.|+|+||.+++||.+.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence 57999999999999999999999999999999999999765
No 257
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.69 E-value=8.4e-05 Score=74.40 Aligned_cols=41 Identities=32% Similarity=0.611 Sum_probs=37.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc-ccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR-SFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~-~~~Gg~~~ 70 (283)
.+||+|||+|++|+.||..+++.|++|+|+|+. +.+||...
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 579999999999999999999999999999974 46898765
No 258
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.68 E-value=0.00075 Score=65.17 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++|+|||+|.+|+.+|..+++.|.+|+|+|+.+.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 218 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF 218 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 368999999999999999999999999999998765
No 259
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.67 E-value=5e-05 Score=72.94 Aligned_cols=38 Identities=29% Similarity=0.568 Sum_probs=34.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
+|+|||||++|+.||..+++.|++|+|+|+++ .||.+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~ 39 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCL 39 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCC
Confidence 89999999999999999999999999999975 677654
No 260
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.67 E-value=5.3e-05 Score=72.99 Aligned_cols=40 Identities=28% Similarity=0.498 Sum_probs=36.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
+++|+|||+|++|+.||..++++|++|+|+|+.+ +||...
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~ 40 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAV 40 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCccc
Confidence 4689999999999999999999999999999875 788765
No 261
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.67 E-value=4.9e-05 Score=73.75 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G--~~V~vlE~~~~~G 66 (283)
.+||+|||||+.|+++|+.|++.+ .+|+|+||.+.+|
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a 83 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFA 83 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchh
Confidence 589999999999999999999963 6999999987654
No 262
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.67 E-value=3.9e-05 Score=76.22 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=31.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 33 v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
|+|||+|+|||+||+.+++.|.+|+|+||++.++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 6899999999999999999999999999998554
No 263
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.67 E-value=0.00083 Score=65.59 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++|+|||||..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l 387 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL 387 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence 469999999999999999999999999999977654
No 264
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.65 E-value=0.00079 Score=64.64 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++++|||||..|+..|..+++.|.+|+++|+.+.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l 204 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL 204 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 368999999999999999999999999999988765
No 265
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.64 E-value=6.2e-05 Score=70.51 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEE-ccccccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIY-ESRSFIGGK 68 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vl-E~~~~~Gg~ 68 (283)
||+|||||+||+.||+.+++.|.+|+++ ++.+.+|..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~ 38 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEM 38 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccc
Confidence 7999999999999999999999999999 676776654
No 266
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.64 E-value=0.00079 Score=64.24 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
.++|+|||||.+|+.+|..+++.|.+|+|+|+.+.+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 193 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL 193 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC
Confidence 3689999999999999999999999999999988763
No 267
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.62 E-value=0.0029 Score=60.23 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=30.8
Q ss_pred CCCCcEEEecccccc---CCCCcchhHHHHHHHHHHHHHHh
Q 023386 213 TPVKNLFLAGSYTKQ---DYIDSMEGPTLSDRQASAYICNA 250 (283)
Q Consensus 213 t~~~~l~iaGd~t~~---~~~~t~ega~~~g~~aA~~il~~ 250 (283)
+..+++|.+||.+.. .++.+...|..+|..+|+.|...
T Consensus 306 ~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~ 346 (424)
T PTZ00318 306 KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNE 346 (424)
T ss_pred CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 567999999999874 24556677899999999998765
No 268
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.61 E-value=7.6e-05 Score=72.36 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=34.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGG 67 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~~Gg 67 (283)
..+||+|||||++|+++|+.|++. +.+|+|+||.+.+|.
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~ 45 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAI 45 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcch
Confidence 357999999999999999999998 899999999667663
No 269
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.61 E-value=6.7e-05 Score=73.60 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=35.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccce
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~ 69 (283)
..||+|||+|.+||+||+.+++. .+|+|+||.+..||..
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t 46 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST 46 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence 57999999999999999999886 8999999999877753
No 270
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.61 E-value=0.00011 Score=71.05 Aligned_cols=41 Identities=24% Similarity=0.482 Sum_probs=38.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccce
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~ 69 (283)
..+||+|||||+.|+.+|..++.+|++|+|+|+++...|..
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS 51 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS 51 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCccc
Confidence 57899999999999999999999999999999999987753
No 271
>PRK06996 hypothetical protein; Provisional
Probab=97.61 E-value=6.8e-05 Score=70.59 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC----CcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG----HEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G----~~V~vlE~~~~ 64 (283)
.+||+|||||++|+++|+.|++.| ++|+|+|+.+.
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 579999999999999999999987 47999999753
No 272
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.61 E-value=0.001 Score=64.52 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHH---CCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~---~G~~V~vlE~~~~~G 66 (283)
.++++|||||..|+-.|..++. .|.+|+|+|+.+++.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il 226 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL 226 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 4689999999999999976544 499999999988764
No 273
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.59 E-value=4.2e-05 Score=69.36 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=37.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
....+|+|||+|+-|+++|+.|+++|.++++||+.+-+--+-+
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GS 47 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGS 47 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCc
Confidence 4567999999999999999999999999999999987655544
No 274
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.59 E-value=7.1e-05 Score=74.39 Aligned_cols=34 Identities=24% Similarity=0.508 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHH----HCCCcEEEEcccccc
Q 023386 32 KVAIIGAGLAGMSTAVELL----DQGHEVDIYESRSFI 65 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~----~~G~~V~vlE~~~~~ 65 (283)
||+|||+|.|||+||+.++ +.|.+|+|+||.+..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 7999999999999999998 679999999998863
No 275
>PRK14727 putative mercuric reductase; Provisional
Probab=97.57 E-value=0.0018 Score=62.58 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~ 62 (283)
++|+|||+|..|+-.|..+++.|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 68999999999999999999999999999864
No 276
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.56 E-value=0.00057 Score=65.45 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++++|||+|.+|+-+|..+++.|.+|+++|+.+.+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI 201 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 468999999999999999999999999999987764
No 277
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.56 E-value=9.3e-05 Score=72.77 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=38.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.++||+|||+|.|||.||+.++++|.+|.|+||.+..+|...
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~ 46 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV 46 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchh
Confidence 368999999999999999999999999999999998776543
No 278
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.56 E-value=8.3e-05 Score=73.66 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~ 68 (283)
..||+|||+|++||+||+.+++. .+|+|+||.+..+|.
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~ 42 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSH 42 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCC
Confidence 47999999999999999999976 999999998866653
No 279
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.55 E-value=9.9e-05 Score=71.50 Aligned_cols=41 Identities=29% Similarity=0.453 Sum_probs=35.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc--------cccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS--------FIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~--------~~Gg~~~ 70 (283)
.+||+|||+|++|+.||+.+++.|++|+|+|+.. .+||.+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~ 50 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCV 50 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccc
Confidence 4799999999999999999999999999999741 4677644
No 280
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.53 E-value=0.0001 Score=72.13 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=35.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~ 68 (283)
+||+|||+|++|+.+|+.|+++|++|+|+|+....|+-
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCC
Confidence 58999999999999999999999999999999988753
No 281
>PRK13748 putative mercuric reductase; Provisional
Probab=97.53 E-value=0.0018 Score=63.71 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~ 62 (283)
.++|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 368999999999999999999999999999974
No 282
>PTZ00058 glutathione reductase; Provisional
Probab=97.51 E-value=0.0032 Score=62.18 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
.++|+|||||..|+-.|..+++.|.+|+|+|+.+++.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 4789999999999999999999999999999987643
No 283
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.51 E-value=0.00012 Score=69.55 Aligned_cols=34 Identities=32% Similarity=0.614 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.+||+|||+|++|++||+.|+++|++|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5799999999999999999999999999999864
No 284
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.50 E-value=0.0037 Score=60.26 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
.++|+|||+|..|+-.|..+++.|.+|+|+|+.+++.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il 210 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC 210 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 4789999999999999999999999999999987653
No 285
>PLN02546 glutathione reductase
Probab=97.49 E-value=0.00083 Score=66.20 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
.++|+|||||..|+-.|..+++.|.+|+|+|+.+.+.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il 288 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL 288 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc
Confidence 4689999999999999999999999999999887654
No 286
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.49 E-value=0.0018 Score=61.77 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
..+|+|||+|..|+-.|..+++.|.+|+|+|+.+.+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 194 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL 194 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 3689999999999999999999999999999977543
No 287
>PRK14694 putative mercuric reductase; Provisional
Probab=97.45 E-value=0.003 Score=60.88 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~ 62 (283)
.++++|||+|.+|+..|..+++.|.+|+++++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 368999999999999999999999999999863
No 288
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.45 E-value=0.00014 Score=67.19 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=39.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
..+||+|||+|+.|..||+.+++.|++..++|++..+||...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL 79 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL 79 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence 469999999999999999999999999999999999999865
No 289
>PRK02106 choline dehydrogenase; Validated
Probab=97.43 E-value=0.00017 Score=71.01 Aligned_cols=35 Identities=31% Similarity=0.315 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHH-CCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~-~G~~V~vlE~~~~ 64 (283)
.+|++|||+|.+|+.+|.+|++ .|++|+|||+.+.
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 5899999999999999999999 7999999999853
No 290
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.43 E-value=0.00026 Score=67.60 Aligned_cols=70 Identities=27% Similarity=0.424 Sum_probs=48.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC----CcEEEEccccccccceeeeecC-CCceeeccceeeccCChHHHHHHHH
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG----HEVDIYESRSFIGGKVGSFIDK-HGNHIEMGLHIFFGCYNNLFRLMKK 100 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G----~~V~vlE~~~~~Gg~~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~ 100 (283)
.+++-|||+|+++|+||.+|.+.+ .+|+|||+.+..||-+....+. .|+... |......++..++++++.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~R-gGR~~~~~~eclwdLls~ 76 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIR-GGRMMEFHYECLWDLLSS 76 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeec-CCccccchhHHHHHHHHh
Confidence 368999999999999999999864 5899999999999988755432 233332 222223344444444443
No 291
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.42 E-value=0.005 Score=54.89 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|+|||+|.+|+-+|..+++.+.+|+++++.+.
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~ 175 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK 175 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc
Confidence 46899999999999999999999999999998653
No 292
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.42 E-value=0.00016 Score=66.71 Aligned_cols=36 Identities=33% Similarity=0.484 Sum_probs=32.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
....||+|||||.+|.+.|+.|++.|.+|+|+||.=
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 346899999999999999999999999999999953
No 293
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.42 E-value=0.0059 Score=58.62 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|+|||||..|+-+|..+.+.|.+|+++++.++
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 47899999999999999999999999999998753
No 294
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.41 E-value=0.00015 Score=75.25 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.+||+|||+|.+||+||+.+++.|.+|+|+||.+.
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 57999999999999999999999999999999885
No 295
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.40 E-value=0.00019 Score=67.41 Aligned_cols=45 Identities=31% Similarity=0.538 Sum_probs=40.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeee
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF 72 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~ 72 (283)
.+.+|++|||+|.-||.||.+|++.|.+|+|+|+...+||-....
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavte 56 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTE 56 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeee
Confidence 457999999999999999999999999999999998888876543
No 296
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.40 E-value=0.0002 Score=65.18 Aligned_cols=41 Identities=39% Similarity=0.617 Sum_probs=36.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc--ccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF--IGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~--~Gg~~~ 70 (283)
..||+|||+|.+||.||..++.+|++|+|+|+... +||...
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf 47 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF 47 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence 57999999999999999999999999999988665 677643
No 297
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.39 E-value=0.00016 Score=70.57 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc-cccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF-IGGK 68 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~-~Gg~ 68 (283)
..||+|||+|.+||+||+.++ +.+|+|+||.+. .||.
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~ 46 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGAS 46 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcc
Confidence 589999999999999999997 579999999987 4444
No 298
>PRK10262 thioredoxin reductase; Provisional
Probab=97.33 E-value=0.0031 Score=57.48 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|+|||+|.+|+-+|..|++.+.+|+++++.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 46899999999999999999999999999998764
No 299
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.32 E-value=0.0003 Score=57.64 Aligned_cols=36 Identities=36% Similarity=0.658 Sum_probs=30.2
Q ss_pred EEECCCHHHHHHHHHHHHC-----CCcEEEEccccccc-ccee
Q 023386 34 AIIGAGLAGMSTAVELLDQ-----GHEVDIYESRSFIG-GKVG 70 (283)
Q Consensus 34 ~IIGgG~aGl~aA~~l~~~-----G~~V~vlE~~~~~G-g~~~ 70 (283)
+|||+|++|++++.+|.+. ..+|+|||+++. | |...
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~ 42 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAY 42 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccC
Confidence 6999999999999999887 468999999666 6 5444
No 300
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.32 E-value=0.0054 Score=57.86 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=32.5
Q ss_pred CCCCcEEEeccccccCC----CCcchhHHHHHHHHHHHHHHh
Q 023386 213 TPVKNLFLAGSYTKQDY----IDSMEGPTLSDRQASAYICNA 250 (283)
Q Consensus 213 t~~~~l~iaGd~t~~~~----~~t~ega~~~g~~aA~~il~~ 250 (283)
...+++|.+||+..... |.+-+-|.++|..+|+.|..+
T Consensus 289 ~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~ 330 (405)
T COG1252 289 PGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKAR 330 (405)
T ss_pred CCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHH
Confidence 45789999999997764 677789999999999998876
No 301
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00028 Score=64.04 Aligned_cols=33 Identities=36% Similarity=0.636 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~ 62 (283)
.+||+|||||++||+||++|.++|+++.|+-+.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 589999999999999999999999999888764
No 302
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.30 E-value=0.0045 Score=60.26 Aligned_cols=32 Identities=31% Similarity=0.354 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~ 62 (283)
.+++|||||..|+-.|..+++.|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 58999999999999999999999999999863
No 303
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.30 E-value=0.00029 Score=67.33 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~~G 66 (283)
+++|+|||||++|+.||..|++. +++|+|+|+++..+
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 35899999999999999999876 57999999998654
No 304
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.29 E-value=0.006 Score=59.61 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++|+|||||.+|+-+|..|+..+.+|+|+++.+.+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 479999999999999999999999999999877653
No 305
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.29 E-value=6.8e-05 Score=69.59 Aligned_cols=92 Identities=27% Similarity=0.425 Sum_probs=61.3
Q ss_pred CCCCChHHHHHHHcccccccCCCC---cccc--ccccceEeecccccccCCCCCC--CCCCCCCCC-CcEEEeccccccC
Q 023386 157 YMPLPNDEIIRRVARQVLALFPLP---QGLE--VIWSSFVKIAQSLYRGGPGKVP--LRTDQKTPV-KNLFLAGSYTKQD 228 (283)
Q Consensus 157 ~~~~~~~eLa~~lg~~i~~~~P~l---~~l~--~~~~~vv~~~~a~~~~~Pg~~~--~rp~~~t~~-~~l~iaGd~t~~~ 228 (283)
+...+.+++.+.+...+.+.+|.. .+.. +............+...+.... ++|..++|+ ++||+|||++...
T Consensus 351 ~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~ 430 (450)
T PF01593_consen 351 WDDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPG 430 (450)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSS
T ss_pred hcccchhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCC
Confidence 344567889999888888888841 1111 1111111223333443333333 566667888 6999999999999
Q ss_pred CCCcchhHHHHHHHHHHHHH
Q 023386 229 YIDSMEGPTLSDRQASAYIC 248 (283)
Q Consensus 229 ~~~t~ega~~~g~~aA~~il 248 (283)
+..+++||+.+|..||++||
T Consensus 431 ~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 431 YPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp STTSHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhC
Confidence 88999999999999999986
No 306
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.28 E-value=0.0054 Score=64.55 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~-~V~vlE~~~~~ 65 (283)
.++|+|||+|..|+..|..|++.|. .|+|+|..+.+
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~ 353 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV 353 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch
Confidence 4789999999999999999999995 68899987643
No 307
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.27 E-value=0.00038 Score=65.58 Aligned_cols=36 Identities=25% Similarity=0.501 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~--~V~vlE~~~~~ 65 (283)
.++|+|||||++|+.||..|++.|. +|+|+++.+..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 4689999999999999999999986 79999988654
No 308
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.25 E-value=0.00021 Score=68.05 Aligned_cols=34 Identities=38% Similarity=0.624 Sum_probs=31.0
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEEccccc--cccc
Q 023386 35 IIGAGLAGMSTAVELLDQGHEVDIYESRSF--IGGK 68 (283)
Q Consensus 35 IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~--~Gg~ 68 (283)
|||+|.+||+||+.++++|.+|+|+||.+. .||.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~ 36 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGN 36 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcC
Confidence 799999999999999999999999999985 4654
No 309
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.25 E-value=0.0064 Score=58.97 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES 61 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~ 61 (283)
.+++|||||..|+-+|..+++.|.+|+|+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 211 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR 211 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence 5799999999999999999999999999986
No 310
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.20 E-value=0.00038 Score=66.36 Aligned_cols=36 Identities=33% Similarity=0.559 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIG 66 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G--~~V~vlE~~~~~G 66 (283)
++|+|||||++|+++|..|++.+ .+|+|+|+++..+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence 47999999999999999999875 5899999998754
No 311
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.00056 Score=63.12 Aligned_cols=41 Identities=39% Similarity=0.524 Sum_probs=37.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~~Gg~~~ 70 (283)
.++|+|||+|+||+.+|..|-++ +.+|.|+|+.|.+.|.++
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvR 62 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVR 62 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceee
Confidence 45999999999999999998874 689999999999999765
No 312
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.16 E-value=0.00049 Score=64.10 Aligned_cols=41 Identities=27% Similarity=0.493 Sum_probs=38.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.++++|||+|..||.+|..++++|++|+++|..+++++++.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 37999999999999999999999999999999999998743
No 313
>PRK12831 putative oxidoreductase; Provisional
Probab=97.15 E-value=0.017 Score=55.66 Aligned_cols=34 Identities=41% Similarity=0.491 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.++|+|||||..|+-+|..|.+.|.+|+++++.+
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 5799999999999999999999999999998754
No 314
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.14 E-value=0.00061 Score=67.25 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=33.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg 67 (283)
+||+|||||++|+.+|..+++.|.+|+|+|++...+|
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g 37 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIG 37 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccccccc
Confidence 5899999999999999999999999999999754433
No 315
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.13 E-value=0.015 Score=55.79 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~-~V~vlE~~~~ 64 (283)
..+|+|||||..|+-+|..|.+.|. +|+++++.+.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 5789999999999999999999998 8999987643
No 316
>PLN02268 probable polyamine oxidase
Probab=97.12 E-value=0.00039 Score=66.11 Aligned_cols=91 Identities=23% Similarity=0.292 Sum_probs=60.8
Q ss_pred CCChHHHHHHHcccccccCCCCc-cccc---cccceEeecccccc-cCCCC-CCCCCCCCCCCCcEEEeccccccCCCCc
Q 023386 159 PLPNDEIIRRVARQVLALFPLPQ-GLEV---IWSSFVKIAQSLYR-GGPGK-VPLRTDQKTPVKNLFLAGSYTKQDYIDS 232 (283)
Q Consensus 159 ~~~~~eLa~~lg~~i~~~~P~l~-~l~~---~~~~vv~~~~a~~~-~~Pg~-~~~rp~~~t~~~~l~iaGd~t~~~~~~t 232 (283)
..+.+++++.+..++.+.+|... +... .|.. -..-+..|. ..||. ..+.+..+.|++++|+||+.+...|+.+
T Consensus 337 ~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~-dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~ 415 (435)
T PLN02268 337 KLSDEAAANFAMSQLKKMLPDATEPVQYLVSRWGS-DPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGS 415 (435)
T ss_pred hCCHHHHHHHHHHHHHHHcCCCCCccEEEecccCC-CCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCccccc
Confidence 35677888888888888887421 1111 1110 011111222 24553 2334455678999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHh
Q 023386 233 MEGPTLSDRQASAYICNA 250 (283)
Q Consensus 233 ~ega~~~g~~aA~~il~~ 250 (283)
||||+.+|.+||++|+..
T Consensus 416 ~eGA~~sG~raA~~v~~~ 433 (435)
T PLN02268 416 VHGAYSTGVMAAEECRMR 433 (435)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999854
No 317
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.11 E-value=0.018 Score=53.34 Aligned_cols=35 Identities=34% Similarity=0.485 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~-V~vlE~~~~ 64 (283)
.++|+|||+|..|+-+|..+.+.|.+ |+|+++.+.
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 36899999999999999999999987 999987643
No 318
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.10 E-value=0.00044 Score=67.76 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSF 64 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G-~~V~vlE~~~~ 64 (283)
|++|||+|.+|+.+|.+|++.| ++|+|||+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999998 69999999864
No 319
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.08 E-value=0.00066 Score=64.30 Aligned_cols=33 Identities=39% Similarity=0.666 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
+||+|||+|++|+++|+.++++|++|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999875
No 320
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.08 E-value=0.00073 Score=64.29 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=33.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++++|+|||||.+|+.+|..|.+.+++|+|+|+++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 4568999999999999999999877899999998775
No 321
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.05 E-value=0.00066 Score=66.73 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
...+|++|||+|.+|...|.+|++.|++|+|||+.+
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 457899999999999999999999999999999984
No 322
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.04 E-value=0.00074 Score=64.86 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
.+|++|||+|++|..||.. ..|++|+|+|+ +.+||...
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~ 39 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCL 39 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeee
Confidence 4899999999999998754 46999999998 46888765
No 323
>PRK07846 mycothione reductase; Reviewed
Probab=97.04 E-value=0.00071 Score=64.98 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
+|++|||+|++|..||.++ .|++|.|+|+. .+||-..
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~-~~GGtC~ 38 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKG-TFGGTCL 38 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCC-CCCCccc
Confidence 7999999999999998764 69999999985 5788655
No 324
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0068 Score=55.64 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.+||+|||||-+|.-||+-|+--=..|++||=.+.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e 388 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 388 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence 58999999999999999999855568999996554
No 325
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.99 E-value=0.00064 Score=65.35 Aligned_cols=33 Identities=36% Similarity=0.529 Sum_probs=27.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCC---CcEEEEccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQG---HEVDIYESRSF 64 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G---~~V~vlE~~~~ 64 (283)
||+|||||++|.++|..|++.+ .+|+|+|+...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 7999999999999999999998 89999999754
No 326
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.94 E-value=0.0021 Score=59.52 Aligned_cols=39 Identities=33% Similarity=0.463 Sum_probs=35.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~ 68 (283)
.++.+|||+|..||-.+..-.+.|.+|+++|-.+.+|+.
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~ 249 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV 249 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc
Confidence 478999999999999988888999999999999999886
No 327
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.94 E-value=0.013 Score=58.90 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=34.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg 67 (283)
..+|+|||||..|+-.|..+++.|.+|+|+|+.+++..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~ 349 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP 349 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 36899999999999999999999999999999887643
No 328
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.92 E-value=0.02 Score=58.55 Aligned_cols=35 Identities=37% Similarity=0.392 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~-V~vlE~~~~ 64 (283)
.++|+|||||..|+-+|..+.+.|.+ |+|+++.+.
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 47899999999999999999999987 999987653
No 329
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.0019 Score=61.40 Aligned_cols=71 Identities=24% Similarity=0.364 Sum_probs=46.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC---CcEEEEccccccccceeeeecCCCceeeccceeec---cC-ChHHHHHHHH
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG---HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF---GC-YNNLFRLMKK 100 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G---~~V~vlE~~~~~Gg~~~~~~~~~g~~~~~g~~~~~---~~-~~~~~~~~~~ 100 (283)
+++|+|||+|++|++.|.+|.+.- ..|.|+|+.+..|+-+...........++-..... .. ..++.++++.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~ 78 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQK 78 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHh
Confidence 479999999999999999998752 13999999999987665332222333333222221 22 3456666655
No 330
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.91 E-value=0.00045 Score=61.64 Aligned_cols=40 Identities=33% Similarity=0.629 Sum_probs=36.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC------CcEEEEccccccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQG------HEVDIYESRSFIGGK 68 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G------~~V~vlE~~~~~Gg~ 68 (283)
..++|+|+|||+.|.++||+|++++ +.|+|||+....||.
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 3589999999999999999999987 799999999887764
No 331
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.89 E-value=0.025 Score=59.19 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=32.8
Q ss_pred CCCCCCcEEEeccccccCCCCcchhHHHHHHHHHHHHHHhcc
Q 023386 211 QKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGE 252 (283)
Q Consensus 211 ~~t~~~~l~iaGd~t~~~~~~t~ega~~~g~~aA~~il~~~g 252 (283)
.+|+.+++|.+||.+. .+.++..|+..|..||..|+...+
T Consensus 803 lqTs~pgVFAaGD~a~--Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 803 GETSLTNVYMIGDVQR--GPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred cccCCCCEEEEecccc--CchHHHHHHHHHHHHHHHHhhhcC
Confidence 3477899999999864 356778999999999999987654
No 332
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.84 E-value=0.034 Score=53.67 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~-~V~vlE~~~~~ 65 (283)
.++|+|||+|..|+-+|..+.+.|. +|++++..+..
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~ 317 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMP 317 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCC
Confidence 5789999999999999998888886 78877766544
No 333
>PLN02676 polyamine oxidase
Probab=96.81 E-value=0.0013 Score=63.82 Aligned_cols=91 Identities=15% Similarity=0.208 Sum_probs=59.3
Q ss_pred CChHHHHHHHcccccccCCCCc----ccc-ccccceEeecccccc-cCCCC-CCCCCCCCCCCCcEEEeccccccCCCCc
Q 023386 160 LPNDEIIRRVARQVLALFPLPQ----GLE-VIWSSFVKIAQSLYR-GGPGK-VPLRTDQKTPVKNLFLAGSYTKQDYIDS 232 (283)
Q Consensus 160 ~~~~eLa~~lg~~i~~~~P~l~----~l~-~~~~~vv~~~~a~~~-~~Pg~-~~~rp~~~t~~~~l~iaGd~t~~~~~~t 232 (283)
.+.++..+.+...+.+.|+... ... ..|.. ...-+..|. ..||. ....+..+.|+++||+||+.|...|+.+
T Consensus 376 ~s~e~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~-dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~ 454 (487)
T PLN02676 376 QPDSETKAEIMEVLRKMFGPNIPEATDILVPRWWS-NRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGY 454 (487)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcceEEecccCC-CCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccc
Confidence 4556667777777777775211 111 12211 111122233 34563 2233444678899999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhc
Q 023386 233 MEGPTLSDRQASAYICNAG 251 (283)
Q Consensus 233 ~ega~~~g~~aA~~il~~~ 251 (283)
||||+.||.+||++|+...
T Consensus 455 ~eGA~~SG~RaA~~I~~~l 473 (487)
T PLN02676 455 VHGAYLAGIDTANDLLECI 473 (487)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999764
No 334
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0014 Score=59.64 Aligned_cols=37 Identities=38% Similarity=0.618 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
...|.|||||.+|.-||++++++|.+|.++|-.+.-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 4679999999999999999999999999999887643
No 335
>PLN02785 Protein HOTHEAD
Probab=96.74 E-value=0.002 Score=63.89 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.+|++|||+|.+|+.+|.+|++ +.+|+|||+.+.
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 5899999999999999999998 689999999863
No 336
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.62 E-value=0.046 Score=57.25 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.++|+|||||..|+-||..+.+.|.+|+++.+.+
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4789999999999999999999999999988653
No 337
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.54 E-value=0.16 Score=47.01 Aligned_cols=37 Identities=11% Similarity=-0.016 Sum_probs=27.5
Q ss_pred CCCcEEEeccccccC---CCCcchhHHHHHHHHHHHHHHh
Q 023386 214 PVKNLFLAGSYTKQD---YIDSMEGPTLSDRQASAYICNA 250 (283)
Q Consensus 214 ~~~~l~iaGd~t~~~---~~~t~ega~~~g~~aA~~il~~ 250 (283)
..+++|.+||.+... .+.+..-|...|..+|..|...
T Consensus 270 ~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~ 309 (364)
T TIGR03169 270 SHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRAS 309 (364)
T ss_pred CCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHH
Confidence 689999999998543 2334456888888888888654
No 338
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.54 E-value=0.08 Score=55.60 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=32.0
Q ss_pred CCCCCCcEEEeccccccCCCCcchhHHHHHHHHHHHHHHhc
Q 023386 211 QKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAG 251 (283)
Q Consensus 211 ~~t~~~~l~iaGd~t~~~~~~t~ega~~~g~~aA~~il~~~ 251 (283)
.+|+.+++|.+||... .+.++..|+..|..||..|+.+.
T Consensus 801 ~~Ts~pgVFAaGD~a~--GP~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 801 GETNITNVFVIGDANR--GPATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred CccCCCCEEEEeCcCC--CccHHHHHHHHHHHHHHHHhccc
Confidence 3477899999999864 35677889999999999998654
No 339
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0025 Score=58.17 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=39.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc-ccccccceeeeecCCCceeecc
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYES-RSFIGGKVGSFIDKHGNHIEMG 83 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~-~~~~Gg~~~~~~~~~g~~~~~g 83 (283)
+-.+|.+|||||-+||+||..+++.|.+|.+||- .|.+-|. +|. .+|.|.+.|
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~Gt--sWG-lGGTCvNVG 70 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGT--SWG-LGGTCVNVG 70 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCC--ccc-cCceeeecc
Confidence 3468999999999999999999999999999985 2333222 332 456666554
No 340
>PLN02529 lysine-specific histone demethylase 1
Probab=96.49 E-value=0.0021 Score=65.13 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=35.8
Q ss_pred CCcEEEeccccccCCCCcchhHHHHHHHHHHHHHHhccc
Q 023386 215 VKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEE 253 (283)
Q Consensus 215 ~~~l~iaGd~t~~~~~~t~ega~~~g~~aA~~il~~~g~ 253 (283)
.++||+||++|...|+.+||||+.||.+||++|+.....
T Consensus 562 ~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 562 SGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred CCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999999999977544
No 341
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.49 E-value=0.0015 Score=60.37 Aligned_cols=43 Identities=30% Similarity=0.530 Sum_probs=37.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccccccccee
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~----G~~V~vlE~~~~~Gg~~~ 70 (283)
...+.+-|||+|++||++|..|.+. |.+++|+|..+..||...
T Consensus 20 VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlD 66 (587)
T COG4716 20 VDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLD 66 (587)
T ss_pred cccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCC
Confidence 4468899999999999999999876 468999999999999754
No 342
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.12 Score=47.18 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|+|||||-+.+-.|..|++.+.+|+++=|.+.
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~ 177 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE 177 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcc
Confidence 46999999999999999999999999999877654
No 343
>PLN03000 amine oxidase
Probab=96.47 E-value=0.0021 Score=65.94 Aligned_cols=96 Identities=18% Similarity=0.259 Sum_probs=61.3
Q ss_pred CCChHHHHHHHcccccccCCC--C---cccc---ccccceEeecccccc-cCCCCC-CCCCCCCCCC--CcEEEeccccc
Q 023386 159 PLPNDEIIRRVARQVLALFPL--P---QGLE---VIWSSFVKIAQSLYR-GGPGKV-PLRTDQKTPV--KNLFLAGSYTK 226 (283)
Q Consensus 159 ~~~~~eLa~~lg~~i~~~~P~--l---~~l~---~~~~~vv~~~~a~~~-~~Pg~~-~~rp~~~t~~--~~l~iaGd~t~ 226 (283)
..+.+++++.+...+...|+- . .+.. ..|. -...-+..|. ..||.. ........|+ +++|+||+.|.
T Consensus 520 ~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~-~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs 598 (881)
T PLN03000 520 TMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWG-GDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATT 598 (881)
T ss_pred cCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCC-CCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHh
Confidence 356778888888888887751 1 1111 1221 1122222333 234532 1222223454 68999999999
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHhccchH
Q 023386 227 QDYIDSMEGPTLSDRQASAYICNAGEELV 255 (283)
Q Consensus 227 ~~~~~t~ega~~~g~~aA~~il~~~g~v~ 255 (283)
..|+.+|+||+.||.+||.+|+.....+.
T Consensus 599 ~~~~GTVhGAieSGlRAA~eIl~~l~~~~ 627 (881)
T PLN03000 599 RRYPATMHGAFVTGLREAANMAQSAKARG 627 (881)
T ss_pred CCCCeeHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999998865543
No 344
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.46 E-value=0.0036 Score=51.33 Aligned_cols=33 Identities=42% Similarity=0.607 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+|.|||||..|.++|..|+++|++|+++.+++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~ 33 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEE 33 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 589999999999999999999999999999864
No 345
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.40 E-value=0.0046 Score=57.73 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G--~~V~vlE~~~~ 64 (283)
+++|+|||||++|+.+|..+.+.+ .+|+|+++.+.
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 368999999999999999998764 58999998774
No 346
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.38 E-value=0.0029 Score=57.85 Aligned_cols=36 Identities=36% Similarity=0.415 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHH----CCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLD----QGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~----~G~~V~vlE~~~~~ 65 (283)
..+|+|||||.+|.+.|+.|.+ .|.+|+|+|+++..
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 5799999999999999999875 47999999998863
No 347
>PLN02976 amine oxidase
Probab=96.35 E-value=0.0033 Score=67.20 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=59.4
Q ss_pred CChHHHHHHHcccccccCCCC---cc---ccccccceEeecccccc-cCCCCCC-CCCCCCCCCCc-EEEeccccccCCC
Q 023386 160 LPNDEIIRRVARQVLALFPLP---QG---LEVIWSSFVKIAQSLYR-GGPGKVP-LRTDQKTPVKN-LFLAGSYTKQDYI 230 (283)
Q Consensus 160 ~~~~eLa~~lg~~i~~~~P~l---~~---l~~~~~~vv~~~~a~~~-~~Pg~~~-~rp~~~t~~~~-l~iaGd~t~~~~~ 230 (283)
.+.+++++.+...+..+|+.. .+ ....|.. -...+..|. ..||... .+.....|+++ ||+||+.|...|+
T Consensus 1087 LSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWss-DPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~p 1165 (1713)
T PLN02976 1087 MSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGR-DPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHP 1165 (1713)
T ss_pred CCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCC-CCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCc
Confidence 456677887777777777631 11 1112221 122223333 3455322 23333567776 9999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHhc
Q 023386 231 DSMEGPTLSDRQASAYICNAG 251 (283)
Q Consensus 231 ~t~ega~~~g~~aA~~il~~~ 251 (283)
.+|+||+.+|.++|.+|+...
T Consensus 1166 GTVHGAIeSG~RAA~eIL~~L 1186 (1713)
T PLN02976 1166 DTVGGAMMSGLREAVRIIDIL 1186 (1713)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 348
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.34 E-value=0.003 Score=57.22 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=36.5
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccccc
Q 023386 26 YGGPKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGG 67 (283)
Q Consensus 26 ~~~~~~~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~~Gg 67 (283)
...+++|++|||||+.|++.|..|.-+ +.+|.|+|+....+-
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~ 87 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAV 87 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhce
Confidence 334579999999999999999998877 899999999988763
No 349
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.34 E-value=0.004 Score=57.71 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHHC---CCcEEEEccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQ---GHEVDIYESRSF 64 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~---G~~V~vlE~~~~ 64 (283)
+|+|||||++|+.+|.++.++ +++|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 589999999999999999643 689999998875
No 350
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.29 E-value=0.087 Score=53.06 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~-~V~vlE~~~ 63 (283)
.++|+|||||..|+-+|..+.+.|. +|+|+++.+
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 5799999999999999999999996 699998765
No 351
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.27 E-value=0.006 Score=57.55 Aligned_cols=36 Identities=28% Similarity=0.553 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G--~~V~vlE~~~~ 64 (283)
.+++|+|||||.+||.+|..|.++- .+|+++|+++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 3579999999999999999999974 88999999876
No 352
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.26 E-value=0.0011 Score=56.85 Aligned_cols=39 Identities=38% Similarity=0.488 Sum_probs=34.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEccccccccce
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKV 69 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~~Gg~~ 69 (283)
.||+|||+|-+||+|||..+++ ..+|.|+|+.-.+||-.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa 117 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA 117 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence 5899999999999999999865 47999999998887753
No 353
>PLN02568 polyamine oxidase
Probab=96.18 E-value=0.0056 Score=60.16 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=35.6
Q ss_pred CCCCcEEEeccccccCCCCcchhHHHHHHHHHHHHHHhcc
Q 023386 213 TPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGE 252 (283)
Q Consensus 213 t~~~~l~iaGd~t~~~~~~t~ega~~~g~~aA~~il~~~g 252 (283)
.|.++||+||..|...|+.||+||+.||.++|++|+....
T Consensus 497 ~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 497 GPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred CCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 3445899999999999999999999999999999997644
No 354
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.14 E-value=0.15 Score=51.44 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~-~V~vlE~~~~ 64 (283)
.++|+|||||..|+-+|..+.+.|. +|+++.+.+.
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence 4789999999999999999999996 6998887643
No 355
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.09 E-value=0.0081 Score=58.04 Aligned_cols=35 Identities=29% Similarity=0.521 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|+|||+|.+|+.+|..|+++|++|+++|+.+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 46899999999999999999999999999997653
No 356
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.09 E-value=0.005 Score=58.82 Aligned_cols=33 Identities=33% Similarity=0.539 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
||+|||+|++||++|..|++. ++|+|+-|.+.-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999988 999999998764
No 357
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.05 E-value=0.0084 Score=62.02 Aligned_cols=37 Identities=30% Similarity=0.599 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~----G~~V~vlE~~~~~G 66 (283)
+++|+|||+|++|+.+|..|.++ +++|+|+++.+.++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 46899999999999999999764 47999999998864
No 358
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.05 E-value=0.0085 Score=50.32 Aligned_cols=33 Identities=39% Similarity=0.558 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+|.|||+|..|...|..++..|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999998765
No 359
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.05 E-value=0.004 Score=59.97 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=36.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~ 68 (283)
..+||+|||||.+|--||.-++-+|++|.++|+++..-|-
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 3589999999999999999999999999999999986664
No 360
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.04 E-value=0.0077 Score=57.76 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
+|+|||.|.+|+++|..|.++|++|+++|+++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 6899999999999999999999999999987654
No 361
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.94 E-value=0.0085 Score=57.97 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~ 62 (283)
.+||+|||||.||+.||..+++.|.++.++-.+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 589999999999999999999999999888653
No 362
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.94 E-value=0.0099 Score=54.13 Aligned_cols=35 Identities=40% Similarity=0.583 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|.|||+|..|...|..++++|++|+++++++.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 35799999999999999999999999999999864
No 363
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.85 E-value=0.021 Score=52.47 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=39.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
...+|.+|||||-.|+.+|.+++..|.+|.|+|..-.+||...
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCV 60 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCV 60 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEE
Confidence 4579999999999999999999999999999999878888754
No 364
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.74 E-value=0.0086 Score=50.58 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=28.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
++|.|||.|..||..|..+++.|++|+.+|.++..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~ 35 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEK 35 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHH
Confidence 58999999999999999999999999999998863
No 365
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=95.74 E-value=0.078 Score=52.63 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=27.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES 61 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~ 61 (283)
..+|+|||||..|..+|++|+++|+++.|++.
T Consensus 39 ~A~vvViggG~~g~~~~yhlak~g~k~avlle 70 (856)
T KOG2844|consen 39 TADVVVIGGGSLGCSTAYHLAKRGMKGAVLLE 70 (856)
T ss_pred cccEEEEcCCchhHHHHHHHHHccccceEEEe
Confidence 37999999999999999999999998554443
No 366
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.69 E-value=0.16 Score=48.04 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=28.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHH--------------CCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLD--------------QGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~--------------~G~~V~vlE~~~~ 64 (283)
...++|||||++|+-.|..|++ +-.+|+++|..|.
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 3579999999999999999874 2357888887765
No 367
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.63 E-value=0.018 Score=52.01 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+.++|.|||+|..|...|..++++|++|+++|+++.
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 457899999999999999999999999999998754
No 368
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.62 E-value=0.02 Score=52.54 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|.|||+|..|...|..++..|++|+++|..+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998764
No 369
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.60 E-value=0.49 Score=50.11 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=31.3
Q ss_pred CCCCCCcEEEeccccccCCCCcchhHHHHHHHHHHHHHHh
Q 023386 211 QKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNA 250 (283)
Q Consensus 211 ~~t~~~~l~iaGd~t~~~~~~t~ega~~~g~~aA~~il~~ 250 (283)
.+|+++++|.+||.+.. +.++-.|+..|..||..|...
T Consensus 716 ~~Ts~pgVFAaGDv~~G--~~~vv~Ai~~Gr~AA~~I~~~ 753 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVTG--GATVILAMGAGRRAARSIATY 753 (1006)
T ss_pred cCCCCCCEEEecCcCCC--ccHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999753 346678999999999998765
No 370
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.60 E-value=0.017 Score=55.12 Aligned_cols=44 Identities=27% Similarity=0.434 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeee
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF 72 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~ 72 (283)
..+||+|+|-|..-...|..|++.|++|+.+|+|+..||.+.+.
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl 46 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASL 46 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcc
Confidence 36899999999999999999999999999999999999987653
No 371
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.59 E-value=0.017 Score=46.51 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=29.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 33 v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
|+|+|+|..|...|++|++.|++|+++-+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999877
No 372
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=95.48 E-value=0.014 Score=59.79 Aligned_cols=91 Identities=22% Similarity=0.265 Sum_probs=56.0
Q ss_pred CChHHHHHHHcccccccCCC-------Ccccc-ccccceEeecccccc-cCCCCC-CCCCCCCCC--CCcEEEecccccc
Q 023386 160 LPNDEIIRRVARQVLALFPL-------PQGLE-VIWSSFVKIAQSLYR-GGPGKV-PLRTDQKTP--VKNLFLAGSYTKQ 227 (283)
Q Consensus 160 ~~~~eLa~~lg~~i~~~~P~-------l~~l~-~~~~~vv~~~~a~~~-~~Pg~~-~~rp~~~t~--~~~l~iaGd~t~~ 227 (283)
.+.+++++.+...+..+|+- ..... ..|.. -..-+..|+ ..||.. ...+....| .++||+||+.|..
T Consensus 577 lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~-DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~ 655 (808)
T PLN02328 577 LSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGK-DCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNK 655 (808)
T ss_pred CCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCC-CCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhC
Confidence 45677888877777776642 11111 11211 111122332 234432 112222334 3689999999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhc
Q 023386 228 DYIDSMEGPTLSDRQASAYICNAG 251 (283)
Q Consensus 228 ~~~~t~ega~~~g~~aA~~il~~~ 251 (283)
.|+.+|+||+.||.++|.+|+...
T Consensus 656 ~~~GtVhGAi~SGlRAA~eIl~~~ 679 (808)
T PLN02328 656 QYPATMHGAFLSGMREAANILRVA 679 (808)
T ss_pred CCCeEhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998763
No 373
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.42 E-value=0.022 Score=51.45 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
..+|.|||+|..|...|..+++.|++|+++|.++..
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 458999999999999999999999999999988764
No 374
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.37 E-value=0.026 Score=51.48 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.++|+|||+|..|...|..|++.|++|+++.+++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4689999999999999999999999999998865
No 375
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.35 E-value=0.024 Score=51.00 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|.|||+|..|...|..++++|++|+++|.++.
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 36899999999999999999999999999998754
No 376
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.29 E-value=0.025 Score=47.55 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=29.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|+|||+|.+++-+|..|++.|.+|+++=|.+.
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 57899999999999999999999999999988763
No 377
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.25 E-value=0.025 Score=49.26 Aligned_cols=35 Identities=40% Similarity=0.566 Sum_probs=32.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
++++|||+|-.|...|..|.+.|++|+++|+++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence 57999999999999999999999999999998764
No 378
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.22 E-value=0.028 Score=53.79 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.++|+|+|+|.+|+.+|..|+++|++|+++|+++
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5789999999999999999999999999999975
No 379
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.19 E-value=0.12 Score=51.95 Aligned_cols=35 Identities=34% Similarity=0.506 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.+.+|||||.-||-||..|.+.|++|+|++-.+.+
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l 180 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL 180 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchH
Confidence 45799999999999999999999999999876654
No 380
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.13 E-value=0.033 Score=54.95 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=33.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccccc
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFI 65 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~-G~~V~vlE~~~~~ 65 (283)
...+|.+|||||-||...|.+|++. ..+|+|+|+....
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4579999999999999999999987 5799999997665
No 381
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.014 Score=53.65 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF 72 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~ 72 (283)
.+||+|||||++|-+||++++++|.+.=|+- .+.||.+.-+
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT 251 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDT 251 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccc
Confidence 5899999999999999999999998764432 2468887643
No 382
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.07 E-value=0.029 Score=50.53 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
++|.|||+|..|...|..++++|++|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 4799999999999999999999999999998765
No 383
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.02 E-value=0.028 Score=53.64 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=31.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~ 62 (283)
.+.+||+|||||.||.-||..+++-|.+.+++-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 45789999999999999999999999988887653
No 384
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.00 E-value=0.025 Score=58.14 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=29.9
Q ss_pred EEEECCCHHHHHHHHHHHHC---CCcEEEEccccccc
Q 023386 33 VAIIGAGLAGMSTAVELLDQ---GHEVDIYESRSFIG 66 (283)
Q Consensus 33 v~IIGgG~aGl~aA~~l~~~---G~~V~vlE~~~~~G 66 (283)
|+|||+|++|+.+|..|.+. +++|+|+|+.+.++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~ 37 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN 37 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC
Confidence 68999999999999988765 46999999999864
No 385
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.97 E-value=0.038 Score=45.75 Aligned_cols=36 Identities=33% Similarity=0.391 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+..+|+|+|+|.+|+.||..+...|++|+++|..+.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~ 54 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE 54 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence 357999999999999999999999999999998764
No 386
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.94 E-value=0.035 Score=50.52 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.++|+|||+|..|...|..|++.|.+|+++.+..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 3689999999999999999999999999999863
No 387
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.91 E-value=0.038 Score=49.82 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++|.|||+|..|...|..++++|++|+++|+++..
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 38 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEI 38 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 367999999999999999999999999999987753
No 388
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.87 E-value=0.037 Score=49.80 Aligned_cols=33 Identities=36% Similarity=0.608 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
++|+|||+|..|...|..|++.|++|+++++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 369999999999999999999999999999843
No 389
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.76 E-value=0.038 Score=50.82 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+++|.|||+|..|...|..|+++|++|+++++.+.
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~ 36 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI 36 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH
Confidence 35799999999999999999999999999998653
No 390
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.046 Score=47.41 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=35.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc----cccceeee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF----IGGKVGSF 72 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~----~Gg~~~~~ 72 (283)
..+|+|||.|+++-.||++++++-++.+|||..-. +||.+.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT 54 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT 54 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence 35899999999999999999999999999997422 46665544
No 391
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.72 E-value=0.048 Score=49.23 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|.|||+|..|...|..+++.|++|+++|.++.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 46799999999999999999999999999998764
No 392
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.69 E-value=0.041 Score=52.36 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|.|||.|..|+..|..|+++|++|+++|.++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998665
No 393
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.61 E-value=0.047 Score=49.23 Aligned_cols=31 Identities=29% Similarity=0.586 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES 61 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~ 61 (283)
++|+|||+|..|...|..|++.|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3699999999999999999999999999988
No 394
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.50 E-value=0.055 Score=48.51 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
..+|.|||+|..|...|..++++|++|+++|.++.
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 35799999999999999999999999999997765
No 395
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.45 E-value=0.061 Score=48.87 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|.|||+|..|...|..+++.|++|++++.++.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 46899999999999999999999999999997653
No 396
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.40 E-value=0.078 Score=45.51 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|+|||||..|+..+..|.+.|.+|+|+.....
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 57999999999999999999999999999987543
No 397
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.38 E-value=0.055 Score=52.69 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=33.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.+..+|+|+|+|++||.|+..+...|.+|+++|.++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3467999999999999999999999999999988764
No 398
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.37 E-value=0.089 Score=41.90 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRS 63 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~-V~vlE~~~ 63 (283)
..++++|||+|.+|-.+++.|.+.|.+ |+|+-|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 468999999999999999999999986 99988754
No 399
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=94.34 E-value=0.086 Score=51.11 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=33.9
Q ss_pred CCCCCCCCcEEEeccccccCCCCcchhHHHHHHHHHHHHHHhc
Q 023386 209 TDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAG 251 (283)
Q Consensus 209 p~~~t~~~~l~iaGd~t~~~~~~t~ega~~~g~~aA~~il~~~ 251 (283)
|..+|+++|||++|+++.-+ ..+-++.++|..+|+.|+.+.
T Consensus 452 ~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 452 PFNRTAIPGLYCVGDSCFPG--QGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred CCCCCCCCCeEEecCcCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence 44579999999999998644 355789999999999998764
No 400
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.33 E-value=0.059 Score=49.04 Aligned_cols=34 Identities=32% Similarity=0.603 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
++|.|||+|..|...|..|++.|++|+++++++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~ 35 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPE 35 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 5799999999999999999999999999998753
No 401
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.22 E-value=0.34 Score=46.31 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
...|+++|+|..||-+|..|..++++|+++++.+.+-
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~ 249 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL 249 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch
Confidence 5679999999999999999999999999999987653
No 402
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.21 E-value=0.065 Score=51.20 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEccccccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGK 68 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~~Gg~ 68 (283)
.+||++||||++|-+.++.|++. ..+|.|+||.+.++.-
T Consensus 3 ~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~E 43 (488)
T PF06039_consen 3 EYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALE 43 (488)
T ss_pred ceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhh
Confidence 58999999999999999999876 5799999999988643
No 403
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=94.17 E-value=0.094 Score=50.86 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=56.0
Q ss_pred HHHHHHHccccccc-CCCCccccccc---------cceEeecccccccCCC---CCCCCCCC-CCCCCcEEEeccccccC
Q 023386 163 DEIIRRVARQVLAL-FPLPQGLEVIW---------SSFVKIAQSLYRGGPG---KVPLRTDQ-KTPVKNLFLAGSYTKQD 228 (283)
Q Consensus 163 ~eLa~~lg~~i~~~-~P~l~~l~~~~---------~~vv~~~~a~~~~~Pg---~~~~rp~~-~t~~~~l~iaGd~t~~~ 228 (283)
+++.+++...+.+. +|.+...-... ..+....++.|-..+. ...+||.. .|+++|||++|+++.-+
T Consensus 392 ~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG 471 (502)
T TIGR02734 392 PRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPG 471 (502)
T ss_pred HHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCC
Confidence 45677777777776 88653221110 0122334454433322 23467754 68999999999998644
Q ss_pred CCCcchhHHHHHHHHHHHHHHhcc
Q 023386 229 YIDSMEGPTLSDRQASAYICNAGE 252 (283)
Q Consensus 229 ~~~t~ega~~~g~~aA~~il~~~g 252 (283)
..+-++.++|..+|+.|+++.+
T Consensus 472 --~Gv~g~~~sg~~~a~~il~~~~ 493 (502)
T TIGR02734 472 --AGVPGVLGSAKATAKLMLGDLA 493 (502)
T ss_pred --CCHHHHHHHHHHHHHHHHhhcc
Confidence 3457899999999999997643
No 404
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.12 E-value=0.077 Score=48.64 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|.|||+|..|...|..|+++|++|+++++.+.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 35899999999999999999999999999999654
No 405
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=93.96 E-value=0.1 Score=48.99 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=29.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~----G~~V~vlE~~~ 63 (283)
.+||+|+|||+.|+..|..+... -++|.++|..+
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 68999999999999988888754 36899999883
No 406
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.92 E-value=0.082 Score=49.56 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+..+|+|||+|.+|+.+|..|...|.+|+++++++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~ 201 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINID 201 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 346799999999999999999999999999998653
No 407
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.88 E-value=0.077 Score=48.59 Aligned_cols=32 Identities=28% Similarity=0.520 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
+|.|||+|..|...|..|+++|++|+++.+++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999999864
No 408
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.85 E-value=0.086 Score=51.34 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|.|||+|..|...|..++++|++|+|+++++.
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999998754
No 409
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.83 E-value=0.083 Score=43.39 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
+++|.+||-|..|...|..|.++|++|+++++++..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~ 36 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEK 36 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhh
Confidence 468999999999999999999999999999988643
No 410
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.82 E-value=0.066 Score=40.57 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
..++|+|||||..|..-+..|.+.|.+|+|+-...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45799999999999999999999999999998773
No 411
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.79 E-value=0.078 Score=49.59 Aligned_cols=34 Identities=32% Similarity=0.546 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
++|.|||.|..||+.|..+++.||+|+++|..+.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 5899999999999999999999999999998664
No 412
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.77 E-value=0.069 Score=50.10 Aligned_cols=44 Identities=30% Similarity=0.447 Sum_probs=40.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccccceeeee
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI 73 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~~~~ 73 (283)
.+||+|||-|..-...|...++.|.+|+=+|+++..||.|.++.
T Consensus 8 ~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfS 51 (547)
T KOG4405|consen 8 EFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFS 51 (547)
T ss_pred hccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCccccee
Confidence 68999999999988888888999999999999999999998653
No 413
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.76 E-value=0.096 Score=49.76 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+..+|+|+|.|+.|+.+|..+...|.+|+++|.++.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 467999999999999999999999999999998764
No 414
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=93.76 E-value=0.047 Score=50.55 Aligned_cols=35 Identities=26% Similarity=0.219 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G-~~V~vlE~~~~ 64 (283)
.+|+++||.|+++|+.|+.|.+.+ .+++.||+.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 369999999999999999999887 89999999886
No 415
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.53 E-value=0.13 Score=46.86 Aligned_cols=35 Identities=34% Similarity=0.423 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|.|||+|..|...|..|.++|++|+++.++..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899999999999999999999999999998753
No 416
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.50 E-value=0.14 Score=43.83 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~ 62 (283)
..++|+|||||-.|...|..|.+.|++|+|+.+.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3679999999999999999999999999999764
No 417
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.46 E-value=0.15 Score=41.85 Aligned_cols=32 Identities=31% Similarity=0.346 Sum_probs=29.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYE 60 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE 60 (283)
..++|+|||||-.|..-|..|.+.|++|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 46799999999999999999999999999994
No 418
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.41 E-value=0.085 Score=50.06 Aligned_cols=33 Identities=39% Similarity=0.535 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+|.|||.|..|+..|..|+++|++|+++++++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998765
No 419
>PRK04148 hypothetical protein; Provisional
Probab=93.40 E-value=0.074 Score=42.47 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
..++++||.| .|...|..|++.|++|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3689999999 999889999999999999998887
No 420
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.32 E-value=0.12 Score=49.40 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.++|+|+|+|.+|+++|..|++.|++|++.|+..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4679999999999999999999999999999754
No 421
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.32 E-value=0.12 Score=50.27 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.++|+|+|.|.+|++++..|.+.|.+|++.|..+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4689999999999999999999999999999653
No 422
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.29 E-value=0.13 Score=46.80 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF 64 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~-~V~vlE~~~~ 64 (283)
++|.|||+|..|...|+.++.+|+ +|+++|..+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 589999999999999999999887 8999998544
No 423
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=93.25 E-value=0.079 Score=47.76 Aligned_cols=35 Identities=34% Similarity=0.529 Sum_probs=28.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-------CcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG-------HEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G-------~~V~vlE~~~~ 64 (283)
.++|+|||+|..||+.|..+.+.. .+|+|++-...
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 579999999999999998888744 47888865443
No 424
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.22 E-value=0.12 Score=50.56 Aligned_cols=36 Identities=36% Similarity=0.517 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
-++|.|||+|..|...|..++++|++|+++|+++..
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~ 40 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA 40 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 467999999999999999999999999999987653
No 425
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.19 E-value=3.8 Score=40.53 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=31.0
Q ss_pred CCCCCCcEEEeccccccCCCCcchhHHHHHHHHHHHHHHh
Q 023386 211 QKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNA 250 (283)
Q Consensus 211 ~~t~~~~l~iaGd~t~~~~~~t~ega~~~g~~aA~~il~~ 250 (283)
+.|+++++|.+||.+. .+.++..|+..|..||..|.+.
T Consensus 405 ~~ts~~~Vfa~GD~~~--g~~~v~~Av~~G~~aA~~i~~~ 442 (564)
T PRK12771 405 MMTGRPGVFAGGDMVP--GPRTVTTAIGHGKKAARNIDAF 442 (564)
T ss_pred ccCCCCCEEeccCcCC--CchHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999875 2456678999999999998655
No 426
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.18 E-value=0.13 Score=46.88 Aligned_cols=34 Identities=41% Similarity=0.623 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF 64 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G--~~V~vlE~~~~ 64 (283)
++|.|||+|..|.++|+.|+.+| ..|.++|++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 37999999999999999999999 48999998754
No 427
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.15 E-value=0.11 Score=49.87 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.++|+|+|-|.+|++||..|.++|++|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 679999999999999999999999999999977766
No 428
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.14 E-value=0.15 Score=49.90 Aligned_cols=36 Identities=36% Similarity=0.487 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
-++|.|||+|..|...|..++++|++|+++|+++..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~ 42 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGA 42 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 468999999999999999999999999999987763
No 429
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.11 E-value=0.088 Score=47.77 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+.-+|+|||||..|.-+|.-+...|.+|+++|.+..
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~ 202 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID 202 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence 356899999999999999999999999999999843
No 430
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.10 E-value=0.14 Score=48.96 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|+|+|.|.+|+++|..|+++|++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899999999999999999999999999997664
No 431
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.01 E-value=0.14 Score=49.26 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.++|.|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 4689999999999999999999999999999765
No 432
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=93.00 E-value=0.23 Score=48.06 Aligned_cols=85 Identities=18% Similarity=0.182 Sum_probs=52.9
Q ss_pred HHHHHHcccccccCCCCcccccc--------c-cceEeecccccccCCCCC---CCCCCCCCCCCcEEEeccccccCCCC
Q 023386 164 EIIRRVARQVLALFPLPQGLEVI--------W-SSFVKIAQSLYRGGPGKV---PLRTDQKTPVKNLFLAGSYTKQDYID 231 (283)
Q Consensus 164 eLa~~lg~~i~~~~P~l~~l~~~--------~-~~vv~~~~a~~~~~Pg~~---~~rp~~~t~~~~l~iaGd~t~~~~~~ 231 (283)
++++++...+.+.+|.+...-.. + ..+....++.|-..+... .++|..+|+++|||++|+++.-+ .
T Consensus 395 ~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG--~ 472 (492)
T TIGR02733 395 QYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG--E 472 (492)
T ss_pred HHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC--C
Confidence 46666777777778865432111 1 112233344443332222 23455579999999999998654 3
Q ss_pred cchhHHHHHHHHHHHHHHh
Q 023386 232 SMEGPTLSDRQASAYICNA 250 (283)
Q Consensus 232 t~ega~~~g~~aA~~il~~ 250 (283)
.+-++.++|..+|+.|++.
T Consensus 473 Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 473 GTAGVSYSALMVVRQILAS 491 (492)
T ss_pred cHHHHHHHHHHHHHHHhhc
Confidence 4578999999999999864
No 433
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.98 E-value=0.17 Score=49.02 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.++|+|+|.|.+|+++|..|.+.|++|++.|+..
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 4679999999999999999999999999999753
No 434
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.95 E-value=0.18 Score=43.10 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR 62 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~-~V~vlE~~ 62 (283)
...+|+|||+|..|..+|..|++.|. +++|+|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35799999999999999999999998 69999986
No 435
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.91 E-value=0.19 Score=42.88 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
..++|+|+|.|-.|..+|..|.+.|++|++.|.++
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 35789999999999999999999999999998764
No 436
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.75 E-value=0.19 Score=49.03 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+..+|+|+|+|.+|+.++..+...|.+|+++|.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 457999999999999999999999999999998765
No 437
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.71 E-value=0.17 Score=45.84 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|+|||.|.+|..++..|...|.+|+++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 57999999999999999999999999999998854
No 438
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.57 E-value=0.14 Score=44.41 Aligned_cols=39 Identities=26% Similarity=0.213 Sum_probs=34.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccccc
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~G 66 (283)
.+.+.|.|||+|..|.-.|...+..|++|.+++++...-
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL 47 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDAL 47 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHH
Confidence 356789999999999999999999999999999987643
No 439
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.53 E-value=0.16 Score=48.99 Aligned_cols=34 Identities=18% Similarity=0.055 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.++|+|+|.|.+|.++|..|.+.|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 4689999999999999999999999999999654
No 440
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.50 E-value=0.2 Score=45.23 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~-~V~vlE~~~ 63 (283)
.++|+|||+|.+|.++|+.|++.|. +|+|++++.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4789999999999999999999997 799998864
No 441
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.38 E-value=0.16 Score=46.30 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
++|.|+|+|..|...|+.|++.|.+|+++=|.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 4799999999999999999999998998877775
No 442
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.23 E-value=0.17 Score=51.58 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|.|||+|..|...|..++..|++|+++|.++.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998765
No 443
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.22 E-value=0.22 Score=47.25 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
..++|+|+|.|..|+.+|..+...|.+|+++|..+.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 367999999999999999999999999999998764
No 444
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.19 E-value=0.18 Score=45.27 Aligned_cols=33 Identities=36% Similarity=0.490 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+|.|||.|..|.+.|..|.++|++|+++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~ 34 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRES 34 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 699999999999999999999999999998754
No 445
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.13 E-value=0.2 Score=47.07 Aligned_cols=33 Identities=36% Similarity=0.520 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESR 62 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G-~~V~vlE~~ 62 (283)
+++|+|||+|-.|..+|..|+++| .+|+|.+|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 468999999999999999999999 899999998
No 446
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.11 E-value=0.18 Score=51.36 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+.++|.|||+|..|...|+.++..|++|+++|.++.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 457899999999999999999999999999998765
No 447
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.08 E-value=0.18 Score=48.56 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHH-HHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMS-TAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~-aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|.|||.|.+|++ +|..|.++|++|++.|..+.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 468999999999999 69999999999999997654
No 448
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.05 E-value=0.2 Score=48.49 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF 64 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G--~~V~vlE~~~~ 64 (283)
++|+|||.|..|+..|..++++| ++|+.+|.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 57999999999999999999885 78999987554
No 449
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=92.00 E-value=0.18 Score=47.80 Aligned_cols=85 Identities=12% Similarity=0.185 Sum_probs=54.3
Q ss_pred CCChHHHHHHHcccccccCCCCccccccccceEeecccccccCCCCCCC----CCCCCCCCCcEEEeccccccCCCCcch
Q 023386 159 PLPNDEIIRRVARQVLALFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPL----RTDQKTPVKNLFLAGSYTKQDYIDSME 234 (283)
Q Consensus 159 ~~~~~eLa~~lg~~i~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~----rp~~~t~~~~l~iaGd~t~~~~~~t~e 234 (283)
....+++++.+...+.+.++... ......+.+...+.....||.... ++.... .+++|+||||+. ...++
T Consensus 362 ~~~~~~~~~~~~~~L~~~~g~~~--~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~---g~~i~ 435 (451)
T PRK11883 362 DATDEELVAFVLADLSKVMGITG--DPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFE---GVGLP 435 (451)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCC--CceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccC---CccHH
Confidence 34577888888888777765321 222334445455444445553221 222222 679999999975 23689
Q ss_pred hHHHHHHHHHHHHHH
Q 023386 235 GPTLSDRQASAYICN 249 (283)
Q Consensus 235 ga~~~g~~aA~~il~ 249 (283)
+|+.+|..+|++|+.
T Consensus 436 ~av~sg~~~a~~i~~ 450 (451)
T PRK11883 436 DCIAQAKRAAARLLA 450 (451)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 450
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.93 E-value=0.26 Score=44.77 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~-~V~vlE~~~~ 64 (283)
+++|+|||+|..|...|..++..|+ +|.++|.++.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 3699999999999999999998876 9999998554
No 451
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=91.91 E-value=0.11 Score=46.08 Aligned_cols=34 Identities=32% Similarity=0.582 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFI 65 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~--G~~V~vlE~~~~~ 65 (283)
+.+|||||++|.+||.+|++. ..+|+++-..+.+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 468999999999999999875 4678888776654
No 452
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=91.91 E-value=0.23 Score=44.86 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|+|||.|.+|...|..|...|.+|+++++++.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 57899999999999999999999999999998764
No 453
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.86 E-value=0.29 Score=44.26 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~-V~vlE~~~ 63 (283)
.+.++|+|+|.+|.++|+.|++.|.+ |+|+.|+.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46899999999999999999999986 99998764
No 454
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.80 E-value=0.26 Score=42.49 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=29.6
Q ss_pred CcEEEEC-CCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 31 LKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 31 ~~v~IIG-gG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
++|.||| +|..|...|..|++.|++|+++.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 3699997 69999999999999999999998765
No 455
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=91.73 E-value=0.27 Score=40.58 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=29.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.+.++|+|=|..|-.+|.+|+..|.+|+|.|..|.
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 57899999999999999999999999999999874
No 456
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.71 E-value=0.24 Score=47.09 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
..+|+|||-|.+|+++|..|.++|++|+++|.+..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 35799999999999999999999999999997654
No 457
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.60 E-value=0.31 Score=37.11 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=29.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 33 v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
|+|+|.|..|...+..|.+.+.+|+++|+++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~ 33 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPER 33 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHH
Confidence 689999999999999999988899999998754
No 458
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.59 E-value=0.29 Score=46.69 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
..++|+|+|.|..|..+|..|...|.+|+++|..+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 457899999999999999999999999999998764
No 459
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.50 E-value=0.31 Score=42.45 Aligned_cols=34 Identities=35% Similarity=0.582 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc---EEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHE---VDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~---V~vlE~~~ 63 (283)
..+|+|+|+|.+|..+|..|.+.|.+ +.|+++..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 57899999999999999999999974 88999874
No 460
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.49 E-value=0.23 Score=46.82 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+|.|||.|..|+..|..++. |++|+++|.++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 69999999999999988875 999999998665
No 461
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.49 E-value=0.29 Score=44.55 Aligned_cols=34 Identities=41% Similarity=0.518 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF 64 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G--~~V~vlE~~~~ 64 (283)
++|+|||+|..|.++|+.|+..| .++.++++++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 37999999999999999999999 47999998655
No 462
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.43 E-value=0.29 Score=50.05 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
+-++|.|||+|..|...|+.++..|++|+++|.++..
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~ 370 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAG 370 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHH
Confidence 3568999999999999999999999999999987653
No 463
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=91.39 E-value=0.37 Score=45.61 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=25.9
Q ss_pred CcEEEeccccc------c-CCCCcchhHHHHHHHHHHHHHH
Q 023386 216 KNLFLAGSYTK------Q-DYIDSMEGPTLSDRQASAYICN 249 (283)
Q Consensus 216 ~~l~iaGd~t~------~-~~~~t~ega~~~g~~aA~~il~ 249 (283)
.|+|+|||..- . ...++.+.|++||+.|.+.+..
T Consensus 478 ~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtg 518 (659)
T KOG1346|consen 478 ENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTG 518 (659)
T ss_pred cceeeecchhhhhcccccceeccccccceeeceeccccccc
Confidence 68999996532 2 3478889999999999887654
No 464
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.33 E-value=0.27 Score=47.84 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.++|.|+|.|.+|+++|..|.++|++|.+.|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 4679999999999999999999999999999754
No 465
>PRK07208 hypothetical protein; Provisional
Probab=91.23 E-value=0.18 Score=48.56 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=60.6
Q ss_pred CCCCCCCChHHHHHHHcccccccCCCCccccccccceEeecccccccCCCCCCCCCC---CCCCCCcEEEeccccccCCC
Q 023386 154 GNPYMPLPNDEIIRRVARQVLALFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLRTD---QKTPVKNLFLAGSYTKQDYI 230 (283)
Q Consensus 154 gg~~~~~~~~eLa~~lg~~i~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~rp~---~~t~~~~l~iaGd~t~~~~~ 230 (283)
++..+..+++++++....++..+.+ .....+....+.+...+.-...+|-....+. ..++.+|+++||++....|
T Consensus 363 ~~~~~~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~- 440 (479)
T PRK07208 363 GDDLWNMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY- 440 (479)
T ss_pred CCccccCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc-
Confidence 3334456788999988888877643 2233444555666554432222221111111 1256789999999877666
Q ss_pred CcchhHHHHHHHHHHHHHHhc
Q 023386 231 DSMEGPTLSDRQASAYICNAG 251 (283)
Q Consensus 231 ~t~ega~~~g~~aA~~il~~~ 251 (283)
.+|++|+.+|..+|+.|+...
T Consensus 441 ~~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 441 NNQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred CChhHHHHHHHHHHHHHhcCC
Confidence 578999999999999887653
No 466
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.22 E-value=0.35 Score=44.40 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~-~V~vlE~~~~ 64 (283)
.++|+|||+|..|...|+.++..|+ ++.|+|.++.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 4689999999999999999999996 8999998665
No 467
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.15 E-value=0.39 Score=39.87 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=30.2
Q ss_pred CCCcEEEECCCH-HHHHHHHHHHHCCCcEEEEccc
Q 023386 29 PKLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESR 62 (283)
Q Consensus 29 ~~~~v~IIGgG~-aGl~aA~~l~~~G~~V~vlE~~ 62 (283)
..++|+|||+|- +|..+|..|.++|.+|+++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 468999999996 6999999999999999998875
No 468
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.06 E-value=0.28 Score=47.12 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.++|.|||.|.+|+++|..|.+.|++|.+.|..+
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~ 42 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNP 42 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCCh
Confidence 3589999999999999999999999999999753
No 469
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=91.06 E-value=0.32 Score=44.02 Aligned_cols=34 Identities=32% Similarity=0.609 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.+|.|||.|..|...|..+.++|++|+++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~ 35 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ 35 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 4799999999999999999999999999998754
No 470
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.05 E-value=0.3 Score=46.99 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=29.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.++|+|+|.|.+|.++|..|. +|.+|+|.|.++
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~ 38 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLK 38 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh-CCCEEEEECCCC
Confidence 478999999999999999998 599999999653
No 471
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=91.01 E-value=0.35 Score=43.15 Aligned_cols=34 Identities=35% Similarity=0.376 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.++++|+|+|.+|.++|..+++.|.+|+++.++.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999998754
No 472
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.01 E-value=0.3 Score=44.52 Aligned_cols=35 Identities=31% Similarity=0.354 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
-++|.|||+|..|-..|+.++..|++|+++|.++.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~ 37 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE 37 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence 47899999999999999999998899999999844
No 473
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.00 E-value=0.28 Score=44.12 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+|.|||.|..|...|..+++.|++|+++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~ 33 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE 33 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 489999999999999999999999999998764
No 474
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=90.91 E-value=0.55 Score=34.12 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=29.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYES 61 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~-G~~V~vlE~ 61 (283)
.++++|+|.|..|..++..+.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 57899999999999999999998 678999988
No 475
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.91 E-value=0.36 Score=38.18 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~-~V~vlE~~~~ 64 (283)
..+|+|||+|..|...|..|++.|. +++|+|....
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 4689999999999999999999997 7999997543
No 476
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=90.78 E-value=0.31 Score=49.60 Aligned_cols=36 Identities=31% Similarity=0.318 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELL-DQGHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~-~~G~~V~vlE~~~~ 64 (283)
+.++|.|||+|..|...|..++ +.|++|+++|.++.
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 3568999999999999999888 58999999998765
No 477
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.78 E-value=0.46 Score=40.00 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=29.9
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccc
Q 023386 30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESR 62 (283)
Q Consensus 30 ~~~v~IIGg-G~aGl~aA~~l~~~G~~V~vlE~~ 62 (283)
.++++|+|| |..|..+|..+++.|++|+++.++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 578999997 999999999999999999999765
No 478
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.77 E-value=0.31 Score=50.34 Aligned_cols=35 Identities=37% Similarity=0.371 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHH-HHHHHHCCCcEEEEcccc
Q 023386 29 PKLKVAIIGAGLAGMST-AVELLDQGHEVDIYESRS 63 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~a-A~~l~~~G~~V~vlE~~~ 63 (283)
+.++|.|||.|.+|+++ |..|.++|++|++.|.++
T Consensus 3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~ 38 (809)
T PRK14573 3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE 38 (809)
T ss_pred CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence 35679999999999999 999999999999999764
No 479
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.76 E-value=0.31 Score=46.65 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
.-.|+|||.|.+|+++|..|.++|++|++.|..+
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 3569999999999999999999999999999764
No 480
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=90.68 E-value=0.27 Score=47.17 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~ 65 (283)
.|+|+|||+|.+|.-.|..|++.|.+|+++-|.+.-
T Consensus 175 GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 175 GKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 589999999999999999999999999999998764
No 481
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=90.66 E-value=0.52 Score=37.82 Aligned_cols=35 Identities=31% Similarity=0.309 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G-~~V~vlE~~~~ 64 (283)
.++++|||+|..|...|..+.+.| .+|++++++..
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~ 54 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLE 54 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence 578999999999999999999986 78999987654
No 482
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.54 E-value=0.47 Score=43.43 Aligned_cols=36 Identities=31% Similarity=0.575 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~--~V~vlE~~~~ 64 (283)
+..+|.|||+|..|.++|+.|...+. ++.|+|.+..
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 39 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 35799999999999999999998886 6899997653
No 483
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.49 E-value=0.35 Score=46.13 Aligned_cols=34 Identities=26% Similarity=0.506 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
++|+|+|+|..|...|..|.+.|++|+++|+++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 4799999999999999999999999999998665
No 484
>PLN02494 adenosylhomocysteinase
Probab=90.37 E-value=0.45 Score=45.84 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.+.|+|+|.|..|..+|..+...|.+|+++|..+.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 57999999999999999999999999999998764
No 485
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.31 E-value=0.45 Score=48.49 Aligned_cols=36 Identities=31% Similarity=0.383 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCcEEEEccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELL-DQGHEVDIYESRSF 64 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~-~~G~~V~vlE~~~~ 64 (283)
+.++|.|||+|..|...|..++ ..|++|+++|.++.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~ 344 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ 344 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence 3578999999999999999988 88999999998654
No 486
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=90.26 E-value=0.43 Score=42.94 Aligned_cols=34 Identities=29% Similarity=0.553 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
++|.|||.|..|...|..+++.|++|+++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~ 36 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE 36 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 5799999999999999999999999999998754
No 487
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.26 E-value=0.48 Score=43.89 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS 63 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~-~V~vlE~~~ 63 (283)
...+|+|||+|..|..+|..|++.|. +++|+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35789999999999999999999997 899998864
No 488
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.07 E-value=0.56 Score=42.95 Aligned_cols=35 Identities=34% Similarity=0.450 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~--~V~vlE~~~~ 64 (283)
..+|.|||+|..|..+|+.|...|. ++.|+|.+..
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 4699999999999999999999987 7999998554
No 489
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.06 E-value=0.55 Score=37.70 Aligned_cols=34 Identities=41% Similarity=0.522 Sum_probs=29.7
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCC--cEEEEccccc
Q 023386 31 LKVAIIGA-GLAGMSTAVELLDQGH--EVDIYESRSF 64 (283)
Q Consensus 31 ~~v~IIGg-G~aGl~aA~~l~~~G~--~V~vlE~~~~ 64 (283)
++|.|||+ |..|...|+.|...+. ++.++|.++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 48999999 9999999999999875 6899998753
No 490
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.03 E-value=0.51 Score=42.30 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS 63 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G-~~V~vlE~~~ 63 (283)
.++|+|+|+|.+|.+++..|.+.| .+|+|+.|+.
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 468999999999999999999999 7899998764
No 491
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.00 E-value=0.5 Score=42.26 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEccccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIG 66 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G-~~V~vlE~~~~~G 66 (283)
...+|+|||.|..|..+|..|++.| .+++|+|.....-
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~ 67 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCV 67 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecc
Confidence 3579999999999999999999999 5899999765433
No 492
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=89.84 E-value=0.43 Score=43.22 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+|.|||.|..|...|..|.++|++|.++++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~ 34 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD 34 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 699999999999999999999999999998765
No 493
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=89.84 E-value=0.51 Score=45.84 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccccccc
Q 023386 29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIG 66 (283)
Q Consensus 29 ~~~~v~IIGgG~aGl~aA~~l~~~G~-~V~vlE~~~~~G 66 (283)
..++|+|||||..|+-+|..+.+.|. .|+++|.++...
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~ 320 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPP 320 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCCh
Confidence 35799999999999999888888875 799999887643
No 494
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=89.82 E-value=0.37 Score=45.99 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=56.5
Q ss_pred CCChHHHHHHHcccccccCCCCccccccccceEeecccccccCCCCCCCC----CCCCCCCCcEEEeccccccCCCCcch
Q 023386 159 PLPNDEIIRRVARQVLALFPLPQGLEVIWSSFVKIAQSLYRGGPGKVPLR----TDQKTPVKNLFLAGSYTKQDYIDSME 234 (283)
Q Consensus 159 ~~~~~eLa~~lg~~i~~~~P~l~~l~~~~~~vv~~~~a~~~~~Pg~~~~r----p~~~t~~~~l~iaGd~t~~~~~~t~e 234 (283)
..+.+++++.+..++...++-.. ...+..+.+...+.....||..... +...++.++|+++|||... ..|+
T Consensus 369 ~~~~ee~~~~v~~~L~~~~gi~~--~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g---~~i~ 443 (462)
T TIGR00562 369 DLSENEIINIVLRDLKKVLNINN--EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG---VGIP 443 (462)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCC--CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC---CcHH
Confidence 45678888888888887776321 2334455555555444444421111 1112345799999999652 3779
Q ss_pred hHHHHHHHHHHHHHHh
Q 023386 235 GPTLSDRQASAYICNA 250 (283)
Q Consensus 235 ga~~~g~~aA~~il~~ 250 (283)
+++.+|..+|++++..
T Consensus 444 ~~i~sg~~~a~~~~~~ 459 (462)
T TIGR00562 444 DCIDQGKAAASDVLTF 459 (462)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999765
No 495
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=89.74 E-value=0.41 Score=45.51 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 32 ~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
+|.|||.|.+|+++|..|.++|++|++.|..+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence 479999999999999999999999999997543
No 496
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.70 E-value=0.48 Score=45.19 Aligned_cols=35 Identities=34% Similarity=0.471 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~ 64 (283)
.++|.|||-|.+|++++..|.+.|++|++.|..+.
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT 40 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 46799999999999999999999999999997543
No 497
>PRK08017 oxidoreductase; Provisional
Probab=89.60 E-value=0.56 Score=40.66 Aligned_cols=33 Identities=27% Similarity=0.285 Sum_probs=30.0
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 31 ~~v~IIGg-G~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
+.|+|+|| |..|...|..|.++|++|+++.+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57999999 9999999999999999999988765
No 498
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.58 E-value=0.5 Score=42.86 Aligned_cols=35 Identities=31% Similarity=0.288 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEccccc
Q 023386 30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSF 64 (283)
Q Consensus 30 ~~~v~IIGgG~aGl~aA~~l~~~G~--~V~vlE~~~~ 64 (283)
..+|.|||.|..|.+.|..+.+.|. +|+++++++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~ 42 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAE 42 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 3689999999999999999999985 8999988754
No 499
>PLN02256 arogenate dehydrogenase
Probab=89.56 E-value=0.58 Score=42.63 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=32.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 023386 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63 (283)
Q Consensus 28 ~~~~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~ 63 (283)
+..++|.|||.|..|-+.|..+.+.|++|+++++++
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 446789999999999999999999999999998875
No 500
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.51 E-value=0.49 Score=43.42 Aligned_cols=40 Identities=35% Similarity=0.529 Sum_probs=35.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccccccee
Q 023386 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70 (283)
Q Consensus 31 ~~v~IIGgG~aGl~aA~~l~~~G~~V~vlE~~~~~Gg~~~ 70 (283)
++|.|||+|.=|-+.|..|+++|++|.++-+++..-..+.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~ 41 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEIN 41 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHH
Confidence 6899999999999999999999999999998777655544
Done!