Query 023387
Match_columns 283
No_of_seqs 179 out of 1227
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00175 diphthine synthase; P 100.0 3E-53 6.4E-58 375.0 28.3 267 1-271 2-269 (270)
2 KOG3123 Diphthine synthase [Tr 100.0 9.9E-50 2.1E-54 327.8 20.0 269 1-273 1-269 (272)
3 TIGR00522 dph5 diphthine synth 100.0 5.6E-47 1.2E-51 334.5 28.5 252 1-271 1-254 (257)
4 COG1798 DPH5 Diphthamide biosy 100.0 1.9E-46 4.2E-51 317.7 25.0 254 1-274 1-255 (260)
5 PRK04160 diphthine synthase; P 100.0 8.1E-42 1.8E-46 302.4 28.5 253 1-273 1-255 (258)
6 COG2875 CobM Precorrin-4 methy 100.0 1.1E-37 2.3E-42 261.6 18.7 233 1-271 4-243 (254)
7 PRK06136 uroporphyrin-III C-me 100.0 1E-36 2.2E-41 268.6 20.7 232 1-271 4-247 (249)
8 COG2243 CobF Precorrin-2 methy 100.0 2.6E-36 5.7E-41 258.0 19.3 212 1-258 3-229 (234)
9 PRK05948 precorrin-2 methyltra 100.0 3.3E-36 7.1E-41 262.4 19.8 214 2-259 6-235 (238)
10 TIGR01465 cobM_cbiF precorrin- 100.0 2.9E-35 6.3E-40 256.2 21.9 219 2-258 1-225 (229)
11 COG2241 CobL Precorrin-6B meth 100.0 3.2E-35 6.9E-40 248.5 16.9 204 1-257 1-206 (210)
12 PRK15473 cbiF cobalt-precorrin 100.0 9.5E-35 2.1E-39 257.1 20.3 235 1-273 9-249 (257)
13 PRK05990 precorrin-2 C(20)-met 100.0 1.3E-34 2.8E-39 253.7 20.5 211 1-258 4-236 (241)
14 TIGR01469 cobA_cysG_Cterm urop 100.0 2.3E-34 5E-39 251.6 21.8 220 1-258 1-231 (236)
15 TIGR01467 cobI_cbiL precorrin- 100.0 1.8E-34 4E-39 251.5 20.5 214 1-258 2-230 (230)
16 PLN02625 uroporphyrin-III C-me 100.0 5.4E-34 1.2E-38 253.1 22.0 220 1-258 16-247 (263)
17 COG0007 CysG Uroporphyrinogen- 100.0 6E-34 1.3E-38 244.6 20.8 220 2-261 6-235 (244)
18 PRK05787 cobalt-precorrin-6Y C 100.0 5.9E-34 1.3E-38 244.8 19.9 205 1-258 1-208 (210)
19 PRK15478 cbiH cobalt-precorrin 100.0 1.2E-33 2.6E-38 247.2 20.6 213 1-260 1-225 (241)
20 PRK05576 cobalt-precorrin-2 C( 100.0 6.9E-34 1.5E-38 247.6 18.7 210 1-258 3-226 (229)
21 PRK10637 cysG siroheme synthas 100.0 2.2E-33 4.7E-38 266.9 22.1 232 1-271 217-455 (457)
22 PF00590 TP_methylase: Tetrapy 100.0 3.3E-33 7.3E-38 239.7 21.2 198 1-242 1-210 (210)
23 PRK05765 precorrin-3B C17-meth 100.0 7.3E-33 1.6E-37 243.4 22.5 216 1-259 3-225 (246)
24 COG1010 CobJ Precorrin-3B meth 100.0 6.3E-33 1.4E-37 233.7 18.5 216 1-260 4-229 (249)
25 TIGR01466 cobJ_cbiH precorrin- 100.0 2E-32 4.3E-37 240.0 22.0 216 2-260 1-224 (239)
26 PRK05991 precorrin-3B C17-meth 100.0 2.3E-32 4.9E-37 241.0 21.8 216 1-260 4-230 (250)
27 PRK07168 bifunctional uroporph 100.0 9.6E-33 2.1E-37 261.8 20.5 232 1-270 4-244 (474)
28 TIGR02467 CbiE precorrin-6y C5 100.0 7.1E-32 1.5E-36 231.0 16.9 201 4-253 1-203 (204)
29 PRK08284 precorrin 6A synthase 100.0 1E-31 2.2E-36 235.9 16.4 195 2-243 4-226 (253)
30 TIGR02434 CobF precorrin-6A sy 100.0 3.4E-31 7.3E-36 232.0 15.7 196 1-243 2-225 (249)
31 PRK14994 SAM-dependent 16S rib 100.0 2.9E-30 6.3E-35 230.2 19.4 213 1-258 13-235 (287)
32 KOG1527 Uroporphyrin III methy 99.9 8.4E-27 1.8E-31 205.8 10.7 220 2-259 258-485 (506)
33 COG0313 Predicted methyltransf 99.9 9.5E-22 2.1E-26 170.9 18.7 212 1-257 6-225 (275)
34 TIGR00096 probable S-adenosylm 99.9 1.3E-20 2.8E-25 166.9 18.7 210 1-257 1-222 (276)
35 COG3956 Protein containing tet 99.5 7.4E-13 1.6E-17 117.5 18.3 226 1-277 4-251 (488)
36 cd00885 cinA Competence-damage 66.1 6 0.00013 32.7 2.9 52 6-60 39-90 (170)
37 TIGR02495 NrdG2 anaerobic ribo 61.1 33 0.00071 28.3 6.6 53 66-118 49-101 (191)
38 TIGR01819 F420_cofD LPPG:FO 2- 60.8 19 0.00041 32.6 5.3 68 8-103 166-238 (297)
39 cd07186 CofD_like LPPG:FO 2-ph 58.3 22 0.00047 32.3 5.2 64 13-103 171-241 (303)
40 COG0602 NrdG Organic radical a 58.1 34 0.00073 29.3 6.2 51 65-115 57-107 (212)
41 TIGR03365 Bsubt_queE 7-cyano-7 56.0 36 0.00078 29.6 6.2 54 67-120 59-113 (238)
42 PRK01215 competence damage-ind 55.2 59 0.0013 28.9 7.4 53 5-60 42-94 (264)
43 COG1634 Uncharacterized Rossma 45.5 17 0.00037 31.5 2.3 27 2-34 55-81 (232)
44 smart00046 DAGKc Diacylglycero 42.9 1.5E+02 0.0032 22.7 7.2 45 80-129 50-100 (124)
45 COG0391 Uncharacterized conser 41.2 19 0.00042 32.9 2.2 21 14-34 178-199 (323)
46 PF01936 NYN: NYN domain; Int 37.8 76 0.0017 24.5 5.0 42 69-114 83-126 (146)
47 cd06167 LabA_like LabA_like pr 37.1 1E+02 0.0022 24.1 5.7 41 72-116 90-132 (149)
48 COG1432 Uncharacterized conser 35.5 1.3E+02 0.0028 25.0 6.2 44 73-120 102-147 (181)
49 TIGR01921 DAP-DH diaminopimela 35.1 86 0.0019 28.8 5.4 52 69-120 100-154 (324)
50 TIGR01917 gly_red_sel_B glycin 34.5 1.2E+02 0.0027 28.9 6.3 55 66-120 321-377 (431)
51 COG1063 Tdh Threonine dehydrog 34.3 69 0.0015 29.5 4.8 76 2-90 172-249 (350)
52 PF06506 PrpR_N: Propionate ca 34.1 1.4E+02 0.003 24.5 6.1 62 18-91 25-89 (176)
53 TIGR00288 conserved hypothetic 34.0 70 0.0015 26.2 4.1 32 80-115 106-137 (160)
54 PRK09417 mogA molybdenum cofac 33.3 65 0.0014 27.2 4.0 51 6-59 45-97 (193)
55 PF02441 Flavoprotein: Flavopr 32.7 67 0.0015 24.8 3.8 42 80-122 1-42 (129)
56 TIGR03820 lys_2_3_AblA lysine- 31.5 1.6E+02 0.0034 28.2 6.6 40 65-105 142-183 (417)
57 PRK13762 tRNA-modifying enzyme 31.4 86 0.0019 28.7 4.8 45 81-125 132-176 (322)
58 PF13353 Fer4_12: 4Fe-4S singl 31.4 1E+02 0.0022 23.7 4.7 51 69-119 40-96 (139)
59 TIGR01918 various_sel_PB selen 29.7 1.6E+02 0.0036 28.0 6.3 55 66-120 321-377 (431)
60 PRK13606 LPPG:FO 2-phospho-L-l 27.6 1.7E+02 0.0038 26.6 6.0 66 13-102 173-240 (303)
61 PF13394 Fer4_14: 4Fe-4S singl 27.4 72 0.0016 23.9 3.1 35 81-115 49-88 (119)
62 cd07388 MPP_Tt1561 Thermus the 27.3 1.8E+02 0.004 25.1 5.9 50 70-119 20-74 (224)
63 COG1504 Uncharacterized conser 27.3 1.3E+02 0.0027 23.2 4.2 23 3-25 65-87 (121)
64 cd07399 MPP_YvnB Bacillus subt 26.3 2.4E+02 0.0052 23.8 6.5 52 66-117 20-79 (214)
65 PF01963 TraB: TraB family; I 26.1 86 0.0019 27.0 3.8 32 2-33 12-46 (259)
66 PF03808 Glyco_tran_WecB: Glyc 24.6 2.3E+02 0.005 23.1 5.9 69 21-105 1-70 (172)
67 COG1509 KamA Lysine 2,3-aminom 24.3 1.8E+02 0.0038 27.2 5.4 41 64-105 144-186 (369)
68 PRK14719 bifunctional RNAse/5- 24.3 2.2E+02 0.0048 26.5 6.2 43 65-111 54-99 (360)
69 cd04922 ACT_AKi-HSDH-ThrA_2 AC 24.0 88 0.0019 20.4 2.7 30 1-30 3-32 (66)
70 PF06414 Zeta_toxin: Zeta toxi 23.9 3.1E+02 0.0067 22.7 6.6 45 69-113 81-125 (199)
71 TIGR03822 AblA_like_2 lysine-2 23.6 1.9E+02 0.0042 26.3 5.7 26 81-106 138-165 (321)
72 cd04917 ACT_AKiii-LysC-EC_2 AC 23.5 1.2E+02 0.0027 19.9 3.4 31 1-31 3-33 (64)
73 PF04055 Radical_SAM: Radical 23.2 1.8E+02 0.0039 22.3 4.8 40 80-119 46-88 (166)
74 PRK05301 pyrroloquinoline quin 22.3 2.5E+02 0.0055 25.9 6.3 39 81-119 64-102 (378)
75 smart00852 MoCF_biosynth Proba 22.1 2.2E+02 0.0048 21.9 5.1 30 7-36 39-68 (135)
76 cd04915 ACT_AK-Ectoine_2 ACT d 22.1 93 0.002 21.0 2.5 29 1-30 4-32 (66)
77 COG1184 GCD2 Translation initi 22.0 3.3E+02 0.007 24.8 6.6 42 82-126 147-189 (301)
78 cd07229 Pat_TGL3_like Triacylg 21.7 1.4E+02 0.003 28.3 4.3 55 67-121 68-123 (391)
79 PRK05579 bifunctional phosphop 21.7 6.6E+02 0.014 23.7 9.0 53 65-117 169-238 (399)
80 KOG0024 Sorbitol dehydrogenase 21.6 2.3E+02 0.0049 26.3 5.5 30 2-33 173-202 (354)
81 COG1597 LCB5 Sphingosine kinas 21.4 3.4E+02 0.0073 24.5 6.7 46 80-130 59-106 (301)
82 TIGR02663 nifX nitrogen fixati 20.8 2.6E+02 0.0057 21.2 5.1 17 17-33 55-71 (119)
83 cd03816 GT1_ALG1_like This fam 20.7 1.4E+02 0.0031 27.9 4.3 11 80-90 32-42 (415)
84 TIGR02826 RNR_activ_nrdG3 anae 20.6 2.9E+02 0.0062 22.1 5.5 48 67-115 49-96 (147)
85 TIGR02109 PQQ_syn_pqqE coenzym 20.4 3E+02 0.0064 25.2 6.3 37 81-117 55-91 (358)
86 cd01335 Radical_SAM Radical SA 20.3 3.1E+02 0.0066 21.6 5.8 39 80-118 45-85 (204)
87 cd04924 ACT_AK-Arch_2 ACT doma 20.1 1.2E+02 0.0025 19.7 2.7 30 1-30 3-32 (66)
No 1
>PTZ00175 diphthine synthase; Provisional
Probab=100.00 E-value=3e-53 Score=375.02 Aligned_cols=267 Identities=68% Similarity=1.072 Sum_probs=239.7
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccccchhhHHHHHHHHHHhccCC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~i~~~~~~~ 80 (283)
|||+||+|||||++||+||+++|++||+|+++.+++.+.. ...+. ++.+.+++....+++.+++.++.+++.++++
T Consensus 2 mlylVG~GpGdp~lLTlkal~~L~~ADvV~~d~~ts~l~~-~~~~~---l~~~~gk~~~~~~r~~~e~~~~~ii~~a~~~ 77 (270)
T PTZ00175 2 MLYIIGLGLGDEKDITVKGLEAVKSADVVYLESYTSILIN-SNKEK---LEEFYGKPVIEADREMVEEGCDEILEEAKEK 77 (270)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEecccchhcc-CCHHH---HHHhcCCeeEecCccCHHHHHHHHHHHhCCC
Confidence 7999999999999999999999999999999998775511 12222 5555565544444555655566777777778
Q ss_pred CEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHHHHcCCccccCCceeEEecccCCCCCCchhHHHHhhhcc
Q 023387 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRSL 160 (283)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~ 160 (283)
+||+|++|||++|+++.+++..+.+.|+++++|||+|+++|++.+|+|++++|.+++|+|.+.||.|.++++.++.|...
T Consensus 78 ~Vv~L~~GDP~i~~t~~~l~~~~~~~gi~vevIPGvSi~sA~~~~Gl~~~~fg~~~sv~~~t~~~~~~s~~~~i~~n~~~ 157 (270)
T PTZ00175 78 NVAFLVVGDPFCATTHTDLYLRAKKKGIEVEVIHNASIMNAIGCTGLQLYRFGETVSIPFFTETWKPDSFYDKIKANRDN 157 (270)
T ss_pred CEEEEECCCCCccCCHHHHHHHHHHCCCcEEEECCcCHHHHHhhcCCCcCCCCceEEEEEEeCCCCCCChhHHHHHHHHc
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEEehhc
Q 023387 161 GLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAGTMRL 240 (283)
Q Consensus 161 ~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~tl~e 240 (283)
|+||++|+|.+.++.+++++++++..|+++.||++.+.+++|.++.++++.++++++++++++.|+|+++|+|..|++++
T Consensus 158 glhTl~lldi~~~~~~~~~~~~~~~~~~~~~~M~~~~a~~~l~~i~~~~~~~~~~~~t~~v~v~r~g~~~q~i~~gtL~~ 237 (270)
T PTZ00175 158 GLHTLCLLDIKVKERSVENLMKGRKIYEPPRYMTINQAIEQLLEVEEKKGGGVIAEDTLVVGVARVGSDDQQIVSGTLED 237 (270)
T ss_pred CCceEEEEeeeccccchhhhhccccccCCCcCCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEECCCCCceEEEEEHHH
Confidence 99999999999888899999999999999999999999999999988777678899999999999999999999999999
Q ss_pred hhhhhcCCCceEEEEeCC-CChhHHHHHhhcc
Q 023387 241 LQMVDFGAPLHCLVIVGE-THPVEEEMLDFYR 271 (283)
Q Consensus 241 l~~~~~~~~~~sliI~~~-~~~~~~~~~~~~~ 271 (283)
+.+.+|+.+++++||+|+ +|++|.|+|+.|.
T Consensus 238 l~~~d~g~PlhsLIv~g~~Lh~~E~e~l~~~~ 269 (270)
T PTZ00175 238 LLDVDFGPPLHSLVICAPTLHDIEEEFFELYR 269 (270)
T ss_pred HhhcccCCCCEEEEEECCcCCHHHHHHHHHhh
Confidence 998889999999999997 9999999999986
No 2
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.9e-50 Score=327.84 Aligned_cols=269 Identities=71% Similarity=1.160 Sum_probs=254.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccccchhhHHHHHHHHHHhccCC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~i~~~~~~~ 80 (283)
|+|+||.|.|+...||+|+++++++|.-|+.+.|+|++-.+.+. .+++|++|+++..|++..++..+.|++.+...
T Consensus 1 mlYlIGlGL~d~kDITlrGLeaVK~c~rVylEaYTSil~~~l~~----~lEk~yGk~iilADRemvEq~sd~il~~ad~~ 76 (272)
T KOG3123|consen 1 MLYLIGLGLGDEKDITLRGLEAVKKCARVYLEAYTSILGVGLDA----TLEKFYGKEIILADREMVEQESDKILDEADKE 76 (272)
T ss_pred CeEEEeccCCcccceehhhHHHHhhhheehHHHHHHHHHhhhhH----HHHHHhCceeEeccHHHHHhhHHHHhhhhhhc
Confidence 89999999999999999999999999999999999987332222 27889999999999988888889999987779
Q ss_pred CEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHHHHcCCccccCCceeEEecccCCCCCCchhHHHHhhhcc
Q 023387 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRSL 160 (283)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~ 160 (283)
+|++|+.|||+...+++.++-++++.|++||+|...|-++|..+.|+.+++||++++|+|+++.|+|.+|+|+|+.|++.
T Consensus 77 dVa~LVVGdPfgATTHsDlvlRAk~~~ipv~vIHNASimNavG~CGLqlY~fGetVSiv~ftd~wrP~SfydkI~~Nr~~ 156 (272)
T KOG3123|consen 77 DVAFLVVGDPFGATTHSDLVLRAKELGIPVEVIHNASIMNAVGCCGLQLYNFGETVSIVFFTDNWRPESFYDKIKENRQL 156 (272)
T ss_pred ceEEEEecCcccccchhhhheehhhcCCCeEEEechHHHhhhccceeeeeccCcEEEEEEEccCcCchhHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEEehhc
Q 023387 161 GLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAGTMRL 240 (283)
Q Consensus 161 ~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~tl~e 240 (283)
|+||++|+|.+.+|+++++|++++.+|+|+.||+..+++++|+|+.+++|-..|.+|+.++-+.|+|+++|+|..||+.+
T Consensus 157 glHTLcLLDIkvkEqs~enl~rgrkiyeppRymsvn~a~~QlLei~e~~~~~~~~edT~~v~~~R~Gs~~q~i~~gt~~~ 236 (272)
T KOG3123|consen 157 GLHTLCLLDIKVKEQSVENLARGRKIYEPPRYMSVNEAAEQLLEIEEKRGEPAYTEDTLCVAVARVGSDDQKIVAGTIKD 236 (272)
T ss_pred CceeEEEEEEeeccHHHHHHhccccccCCchhhhHHHHHHHHHHHHHhhCCCCcCCCceEEEEEecCCCcceeeheeHHh
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred hhhhhcCCCceEEEEeCCCChhHHHHHhhccCC
Q 023387 241 LQMVDFGAPLHCLVIVGETHPVEEEMLDFYRLT 273 (283)
Q Consensus 241 l~~~~~~~~~~sliI~~~~~~~~~~~~~~~~~~ 273 (283)
+...+|+.|++|++|+|..|++|.|+|..|..+
T Consensus 237 l~~~d~G~PLHslii~ge~h~lE~e~l~~~~~~ 269 (272)
T KOG3123|consen 237 LAEVDFGEPLHSLIIPGETHPLELEMLESFAKN 269 (272)
T ss_pred HhhcccCCCceeEEeecCcChHHHHHHHHhccc
Confidence 999999999999999999999999999998754
No 3
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=100.00 E-value=5.6e-47 Score=334.53 Aligned_cols=252 Identities=46% Similarity=0.762 Sum_probs=213.7
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccccchhhHHHHHHHHHHhccCC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~i~~~~~~~ 80 (283)
|||+||+|||||++||+||+++|++||+|+++.+++.+ .+ ..++.++.+.+++.....+..+++..+.+.+.++++
T Consensus 1 ~l~~VG~GPGd~~llTl~a~~~L~~advV~~~~~~s~l-~~---~~~~~~~~~~~~~~~~~~~~~~e~~~~~ii~~~~~~ 76 (257)
T TIGR00522 1 MLYLIGLGLYDENDISVKGLEAIKKADEVYAEFYTSKL-LG---SSIEEIEEFFGKRVVVLERSDVEENSFRLIERAKSK 76 (257)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEeccchhh-cc---ccHHHHHHHhCCcccccCHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999998765543 11 122335555566544334455655567777777668
Q ss_pred CEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHHhhhc
Q 023387 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRS 159 (283)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~ 159 (283)
+|++|++|||++|+++.++++.+.+.+++++|||||||++++ |++|+|+++++.+.++++.+.|+++.++++.++.+..
T Consensus 77 ~Vv~l~~GDP~i~~~~~~l~~~l~~~~i~vevIPGiSs~~aaaa~~g~~lt~~g~~~~v~~~s~~~~~~~~~~~~~~~l~ 156 (257)
T TIGR00522 77 DVALLVAGDPMVATTHTDLKLEAKRKGIETRIIHGASISSAVCGLTGLQLYKFGKTATIVFFTDNYRPQTPYNVIKENRK 156 (257)
T ss_pred CEEEEECCcCcccCCHHHHHHHHHHCCCeEEEECcHhHHHHHHHHcCCCcccCCCcEEEEEecCCcCCCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999987 8899999999999999999999988777788888888
Q ss_pred cCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEEehh
Q 023387 160 LGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAGTMR 239 (283)
Q Consensus 160 ~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~tl~ 239 (283)
.+.||++++|.+..+ ..+|.+.+.++.|.++.+++..+++++++++++++|+|+|||+++.+|++
T Consensus 157 ~~~~Tlvll~~~~~~---------------~~~M~~~~~~~~l~~~~~~l~~~g~~~~tpv~vv~~~~~~de~i~~gtl~ 221 (257)
T TIGR00522 157 IGLHTLVLLDIHPKE---------------NRAMTIGEGLENLLEEEEKRKTGAITPDTYAVVIARAGSGKPVVKCDKIE 221 (257)
T ss_pred cCCCcEEEEecccCc---------------ccccCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEEECCCCCceEEEEEHH
Confidence 899999999876422 24788889888888877666666889999999999999999999999999
Q ss_pred chhhhhcCCCceEEEEeCC-CChhHHHHHhhcc
Q 023387 240 LLQMVDFGAPLHCLVIVGE-THPVEEEMLDFYR 271 (283)
Q Consensus 240 el~~~~~~~~~~sliI~~~-~~~~~~~~~~~~~ 271 (283)
++.+.+++.+..+++|+|+ +|++|+|+|+++.
T Consensus 222 ~l~~~~~~~~~~alii~g~~l~~~e~~~~~~~~ 254 (257)
T TIGR00522 222 NLKNYDFGEPLHCLVVLAKTLHFMEFEYLREFA 254 (257)
T ss_pred HHHhcccCCCCeEEEEeCCCCCHHHHHHHHHhc
Confidence 9988878777789999997 9999999999987
No 4
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-46 Score=317.72 Aligned_cols=254 Identities=52% Similarity=0.783 Sum_probs=234.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccccchhhHHHHHHHHHHhccCC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~i~~~~~~~ 80 (283)
|||+||+|+.|...||+++.+++++||.|+++.|++.+ ....++.++.+.+++++..++...++..+.|++.++++
T Consensus 1 mL~lVGlGL~d~~diTl~gleavr~~d~Vy~E~YTS~~----~~~~~e~le~~~gkev~~~~R~dlE~~~~~il~~a~~~ 76 (260)
T COG1798 1 MLYLVGLGLYDEGDITLKGLEAVRKADRVYAEFYTSIL----LGSNLEKLEELIGKEVILLDREDLEENSRSILDRAKDK 76 (260)
T ss_pred CeEEEEeccCccCceeHHHHHHHHhCCEEEEEeeeccc----ccchHHHHHHHhCCceEeccHHHHhhcchhHHHHHhcC
Confidence 99999999999999999999999999999999999876 11223447777899998888888887667899988889
Q ss_pred CEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHHhhhc
Q 023387 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRS 159 (283)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~ 159 (283)
+|++|+.|||++..+|..|.-.+++.|++++||||+|.++|+ ++.|+..++||.+++|+|++.+|.|.++++.|+.|.+
T Consensus 77 ~Vall~~GDpmvATTH~~L~~~A~~~Gi~v~vIh~~Si~~Aa~g~tGL~~YkFG~~vTip~~~~~~~p~s~yd~Ik~N~~ 156 (260)
T COG1798 77 DVALLVAGDPMVATTHVDLRIEAKRRGIEVRVIHGASIINAAIGLTGLQNYKFGKTVTLPFPSENFFPTSPYDVIKENLE 156 (260)
T ss_pred CEEEEecCCcceehhHHHHHHHHHHcCCcEEEEcccHHHHHHhhhhhhheeccCCceEecccccCcCCCcHHHHHHHhhh
Confidence 999999999999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred cCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEEehh
Q 023387 160 LGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAGTMR 239 (283)
Q Consensus 160 ~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~tl~ 239 (283)
.|+||++|+|.+.++ .+|++.+.++.|+|+.++.+.+.+.+++.++++.++|.++|.|+.++++
T Consensus 157 ~GLHTl~lLDi~~~~----------------r~Mt~~ea~~~LLe~e~~~~~~~~~~d~~~vvvaR~Gs~~~~v~ag~l~ 220 (260)
T COG1798 157 RGLHTLVLLDIKEDE----------------RYMTANEALELLLEAEERRGRGVLTEDTLAVVVARAGSGDEVVRAGTLE 220 (260)
T ss_pred cCccceEEEEecccc----------------cccCHHHHHHHHHHHHHHhcCCCcCCCceEEEEEecCCCCceEEechHH
Confidence 999999999987542 4899999999999999999988899999999999999999999999999
Q ss_pred chhhhhcCCCceEEEEeCCCChhHHHHHhhccCCC
Q 023387 240 LLQMVDFGAPLHCLVIVGETHPVEEEMLDFYRLTD 274 (283)
Q Consensus 240 el~~~~~~~~~~sliI~~~~~~~~~~~~~~~~~~~ 274 (283)
++.+.+|+.++++++|++++|.+|+|+|+++....
T Consensus 221 ~l~~~Dfg~Plh~lvvp~~Lh~~E~e~L~~~a~~~ 255 (260)
T COG1798 221 ELADEDFGEPLHSLVVPGRLHFVEAEYLRELAGAP 255 (260)
T ss_pred HHhhcccCCCceEEEEeccccHHHHHHHHHHhcCh
Confidence 99999999999999999999999999999987653
No 5
>PRK04160 diphthine synthase; Provisional
Probab=100.00 E-value=8.1e-42 Score=302.44 Aligned_cols=253 Identities=51% Similarity=0.764 Sum_probs=196.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccccchhhHHHHHHHHH-HhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKIL-SESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~i~-~~~~~ 79 (283)
|||+||+||||||+||+||+++|++||+|+++.+++.. ..+.++.+..+.+++....++..+++..+.+. +.+++
T Consensus 1 ~l~vVG~GpG~pd~lT~~a~~~L~~advv~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (258)
T PRK04160 1 MLYFIGLGLYDERDITLKGLEALRNADKVYAEFYTSIL----MGTTIEKLEELIGKEIIVLDREDVEQESEKIILEEAKE 76 (258)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEecccCcc----ccccHHHHHHHhCCceeecCHHHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999998754322 11222335544444433333455566566554 55555
Q ss_pred CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHHhhh
Q 023387 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNR 158 (283)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~~~ 158 (283)
++||+|++|||++|+++.++.+.+++.+++++++|||||+|++ |++|+|++.++.+.++...+.++.+....+.+..+.
T Consensus 77 ~~Vv~L~sGDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~~~~~g~~~s~~~~~~~~~~~~~~~~i~~~~ 156 (258)
T PRK04160 77 KNVAFLTAGDPMVATTHVDLRLEAKKRGIEVRVIHGVSIYSAAISLTGLQNYKFGKSVTVPFPYGNFFPESPYDVIKDNL 156 (258)
T ss_pred CCEEEEeCCCCccccCHHHHHHHHHHCCCcEEEECChhHHHHHHHHhCCCcccCCceEEEccCcCCcCCCCHHHHHHHHH
Confidence 8999999999999999999999998889999999999999976 889999999988899876565655444456666666
Q ss_pred ccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEEeh
Q 023387 159 SLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAGTM 238 (283)
Q Consensus 159 ~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~tl 238 (283)
..+.+++++++.... ..+|.+..+++.|.+..+++..++++++++++|++|+|+++|+|+.+++
T Consensus 157 ~~~~~~~vll~~~~~----------------~~~~~~~~~~~~L~~~~~~l~~g~~~~~~~v~V~e~l~~~~E~i~~~tl 220 (258)
T PRK04160 157 ERGLHTLVLLDIKAD----------------GRYMTANEALELLLELEEKRGEGVISEDTLAVVVARAGSPDPVVRAGRL 220 (258)
T ss_pred hcCCCcEEEEEeccC----------------CcccCHHHHHHHHHHHHHHhcccccCCCCEEEEEEecCCCCceEEEccH
Confidence 667778887653211 1257777777776665443333457789999999999999999999999
Q ss_pred hchhhhhcCCCceEEEEeCCCChhHHHHHhhccCC
Q 023387 239 RLLQMVDFGAPLHCLVIVGETHPVEEEMLDFYRLT 273 (283)
Q Consensus 239 ~el~~~~~~~~~~sliI~~~~~~~~~~~~~~~~~~ 273 (283)
+++.+.+|+.++++++|++++|.+|+++++.+.+.
T Consensus 221 ~~l~~~~f~~~~~~~ii~~~~~~~~~~~~~~~~~~ 255 (258)
T PRK04160 221 EELADYDFGGPLHILIIPGKLHFMEAEALKELAGA 255 (258)
T ss_pred HHHhhCCCCCCCEEEEEeCCCCHHHHHHHHHHhcC
Confidence 99987788667889999999999999999988653
No 6
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-37 Score=261.62 Aligned_cols=233 Identities=26% Similarity=0.327 Sum_probs=168.2
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCCccccchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~i~~~~~~ 79 (283)
++|+||.||||||+||+|+++.|++||+|+|.|+ + ++++. ++.+. +.+++....-+++++.+.+.+..++
T Consensus 4 ~VyFIGAGPGdpdLiTvkg~~ll~~advviYAGS--L----V~~el---L~~~~~~aei~nSa~~tLeeIi~~m~~a~~~ 74 (254)
T COG2875 4 KVYFIGAGPGDPDLITVKGQRLLEKADVVIYAGS--L----VPPEL---LEYCRPDAEIVNSASLTLEEIIDLMVDAVRE 74 (254)
T ss_pred eEEEEccCCCCcceeeehHHHHHhhCCEEEECCC--c----CCHHH---HhhcCCCCEEEecCcCCHHHHHHHHHHHHHc
Confidence 3899999999999999999999999999999984 2 35555 44332 3344322233678888888887766
Q ss_pred -CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHHhh
Q 023387 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRN 157 (283)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~~ 157 (283)
|+|++|.+|||.+||...+.++.|.+.|+++|++||||||+|+ |.+|+.|+-.+.+.+++...-.+|..-+
T Consensus 75 Gk~VvRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vp------- 147 (254)
T COG2875 75 GKDVVRLHSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTPVP------- 147 (254)
T ss_pred CCeEEEeecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccccCCCCC-------
Confidence 9999999999999999999999999999999999999999976 6799999998888888765544442100
Q ss_pred hccCccceEeeecccccchhhhhhc-CccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEE
Q 023387 158 RSLGLHTLCLLDIRVKEPSLESLCR-GKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAG 236 (283)
Q Consensus 158 ~~~~~~~~~l~d~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~ 236 (283)
..+.++.|++ +.++ +.|+... ..+++.+-|. .++|++|+|++|+++++||||++++|
T Consensus 148 ---------------e~e~l~~la~~~aTm---~I~L~v~-~I~~vv~~L~---~g~y~~dtPVaVV~rAsWpDe~ii~G 205 (254)
T COG2875 148 ---------------EKESLAALAKHGATM---VIFLGVH-AIDKVVEELL---EGGYPPDTPVAVVYRASWPDEKIIRG 205 (254)
T ss_pred ---------------chhHHHHHHhcCcee---Eeeehhh-HHHHHHHHHh---cCCCCCCCCEEEEEecCCCcccEEEe
Confidence 0112333433 2111 2244433 3334444332 15899999999999999999999999
Q ss_pred ehhchhhh--hcCCCceEEEEeCC-CChhHHHHHhhcc
Q 023387 237 TMRLLQMV--DFGAPLHCLVIVGE-THPVEEEMLDFYR 271 (283)
Q Consensus 237 tl~el~~~--~~~~~~~sliI~~~-~~~~~~~~~~~~~ 271 (283)
||+++.+. +.+....+++|+|. +.+.+-...+.|+
T Consensus 206 TL~dIa~kv~~~~i~rTAlIiVG~~l~~~~~~~S~LY~ 243 (254)
T COG2875 206 TLEDIAEKVKEAGIRRTALIIVGDVLDPEGFRRSKLYD 243 (254)
T ss_pred eHHHHHHHHHhcCceeEEEEEEccccCcCccccccccC
Confidence 99999764 23455678999994 4443333334443
No 7
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=100.00 E-value=1e-36 Score=268.59 Aligned_cols=232 Identities=22% Similarity=0.254 Sum_probs=162.1
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHH-----HhCCCccccchhhHHHHHHHHHH
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEK-----LYGKPIALADREMVEEKADKILS 75 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~-----~~~k~~~~~~~~~~~~~~~~i~~ 75 (283)
|||+||+|||||++||++|+++|++||+|+++.... .+.++.+.. ..+++... ....+++..+.+.+
T Consensus 4 ~l~iVGvGpGdp~~lT~~A~~~L~~advI~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~ 75 (249)
T PRK06136 4 KVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVS-------PEILAYAKPDAELIYVGKRAGR-HSTKQEEINRLLVD 75 (249)
T ss_pred EEEEEEECCCChHHHHHHHHHHHhcCCEEEEcCCCC-------HHHHhhCCCCCEEEeCCCcCCC-CCcCHHHHHHHHHH
Confidence 599999999999999999999999999999975421 111111110 00111000 11223445566666
Q ss_pred hccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchh-H
Q 023387 76 ESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFY-E 152 (283)
Q Consensus 76 ~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~-~ 152 (283)
.+.+ ++||+|++|||++|+++.++++.+.+.+++++|||||||+|++ |++|+||++++++.++.+.+.|.++.+.. .
T Consensus 76 ~~~~g~~V~~l~~GDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 155 (249)
T PRK06136 76 YARKGKVVVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAAGKLEPE 155 (249)
T ss_pred HHHCCCeEEEEeCCCchhhhcHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCcccCCcceeEEEEecccCCCccccc
Confidence 6544 8999999999999999999999998889999999999999976 88999999998877776667776653211 0
Q ss_pred HHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeE
Q 023387 153 KIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQM 232 (283)
Q Consensus 153 ~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~ 232 (283)
....+...+.+++++ ++......++.+.+.+.| +++++++++++|+|+|+|+
T Consensus 156 ~~~~~l~~~~~~~vl-------------------------~~~~~~~~~i~~~L~~~g---~~~~~~~~v~~~lg~~~E~ 207 (249)
T PRK06136 156 VNWSALADGADTLVI-------------------------YMGVRNLPYIAAQLLAAG---RAPDTPVAIIENGTTPEQR 207 (249)
T ss_pred cCHHHHhCCCCeEEE-------------------------ECCHHHHHHHHHHHHHcC---CCCCCeEEEEEeCCCCCcE
Confidence 000111122233333 222233445555555444 5678999999999999999
Q ss_pred EEEEehhchhhh----hcCCCceEEEEeCCCChhHHHHHhhcc
Q 023387 233 IVAGTMRLLQMV----DFGAPLHCLVIVGETHPVEEEMLDFYR 271 (283)
Q Consensus 233 i~~~tl~el~~~----~~~~~~~sliI~~~~~~~~~~~~~~~~ 271 (283)
|+.++++++... + ....++||+|+.-. .++.|.||.
T Consensus 208 i~~~~l~el~~~~~~~~--~~~~~vviig~~~~-~~~~~~~~~ 247 (249)
T PRK06136 208 VVRGTLGTIAEGAAAED--IQSPAIIVIGEVVA-LRAKLAWFE 247 (249)
T ss_pred EEEEEHHHHHHHHHhcC--CCCCEEEEEchhhC-ccccccccc
Confidence 999999999765 4 34568888886444 488888875
No 8
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=100.00 E-value=2.6e-36 Score=258.03 Aligned_cols=212 Identities=25% Similarity=0.322 Sum_probs=163.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCC--C---ccc---cc-----hhhHH
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGK--P---IAL---AD-----REMVE 67 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k--~---~~~---~~-----~~~~~ 67 (283)
|||+||+||||||+||+||+++|++||||++|+.... ..-+.++++++..+ . +.+ .+ .+.|+
T Consensus 3 klygVGvGPGDPeLlTlkAi~~L~~adVi~~P~~~g~-----~slAr~Iv~~y~~~~~~~~~l~fPm~~~~~e~~~~~~~ 77 (234)
T COG2243 3 KLYGVGLGPGDPELLTLKAIRALKKADVVYVPSKKGK-----GSLAREIVEDYLTPGSRIVELHFPMTTDMREELEDAWE 77 (234)
T ss_pred eEEEEecCCCChhhhhHHHHHHHhhCCEEEEecCCCc-----cchHHHHHHHhcCCCceeeEEEeccCCchHHHHHHHHH
Confidence 5999999999999999999999999999999943221 11233446666431 1 111 22 13577
Q ss_pred HHHHHHHHhccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCC
Q 023387 68 EKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 145 (283)
Q Consensus 68 ~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~ 145 (283)
++++.|.+.+++ ++|+|++.|||+|||++.++.++++..|+++|+||||||+++| |++|+|+...+++++|.+.+..
T Consensus 78 e~a~~va~~l~~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVsS~~a~aa~~~~pL~~g~~~l~Vlp~t~~- 156 (234)
T COG2243 78 EAAAEVAAELEAGRDVAFLTLGDPTFYSTFMYLLERLRERGFEVEVVPGVSSFSACAARLGVPLVEGDDSLSVLPATRP- 156 (234)
T ss_pred HHHHHHHHHHHcCCeEEEEEccCccHHHHHHHHHHHhhccCCceEEeCCcchHHHHHHHhCCceeccCceeEEEeccCc-
Confidence 888888888877 7999999999999999999999999989999999999999998 7799999999999999875542
Q ss_pred CCCchhHHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEec
Q 023387 146 RPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFAR 225 (283)
Q Consensus 146 ~~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~ 225 (283)
-+.+.. .+..+++.+.|+.++..+.+.+.+.+.|. ...+++++|
T Consensus 157 -----~~~~~~--------------------------~l~~~d~~VvMK~~~~~~~i~~~l~~~g~-----~~~~~~v~R 200 (234)
T COG2243 157 -----DEELER--------------------------ALADFDTAVVMKVGRNFEKLRRLLAKLGL-----LDRAVYVER 200 (234)
T ss_pred -----hhhHHh--------------------------HHhhCCeEEEEecCCcHHHHHHHHHhcCC-----CceEEEEee
Confidence 111111 12234666789998888888888877775 456779999
Q ss_pred cCCCCeEEEEEehhchhhhhcCCCceEEEEeCC
Q 023387 226 LGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGE 258 (283)
Q Consensus 226 lg~~~E~i~~~tl~el~~~~~~~~~~sliI~~~ 258 (283)
+++++|+|+. +.+....+ .+|||++++.+
T Consensus 201 ~~m~~e~i~~--l~~~~~~~--~~Yfs~ii~~r 229 (234)
T COG2243 201 ATMAGEKIVR--LAEAERDE--KPYFSTILVRR 229 (234)
T ss_pred cCCCCcEEEe--ccccCccc--CCceEEEEEec
Confidence 9999999997 66655444 48999999863
No 9
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=100.00 E-value=3.3e-36 Score=262.40 Aligned_cols=214 Identities=18% Similarity=0.148 Sum_probs=156.8
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhC--CCcc---c---cc----hhhHHHH
Q 023387 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG--KPIA---L---AD----REMVEEK 69 (283)
Q Consensus 2 l~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~--k~~~---~---~~----~~~~~~~ 69 (283)
||+||+||||||+||+||+++|++||+|++|....-- ..-+.++++++.. +++. + .+ ...|++.
T Consensus 6 ly~VGvGPGdp~LlTlkA~~~L~~advi~~p~~~~~~----~s~a~~i~~~~~~~~~~~~~l~fpm~~~~~~~~~~~~~~ 81 (238)
T PRK05948 6 LYGISVGPGDPELITLKGLRLLQSAPVVAFPAGLAGQ----PGLAEQIIAPWLSPQQIKLPLYFPYVQDEEQLEQAWQAA 81 (238)
T ss_pred EEEEEecCCChHHhHHHHHHHHhhCCEEEEeCCCCCc----hhHHHHHHHHHcCCCcEEEEecCCccCChHHHHHHHHHH
Confidence 8999999999999999999999999999998743100 0112233555432 2111 1 12 2246667
Q ss_pred HHHHHHhccC-CCEEEEecCCCCCCccHHHHHHHHHh--CCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCC
Q 023387 70 ADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKK--LGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 145 (283)
Q Consensus 70 ~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~--~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~ 145 (283)
++.+.+.+++ ++|++|++|||++||++.++.+.+++ .++++||||||||++++ |++|+||++.+++++|++.+..
T Consensus 82 ~~~i~~~~~~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGIss~~a~aa~~g~pL~~~~e~l~ii~~~~~- 160 (238)
T PRK05948 82 ADQVWHYLEQGEDVAFACEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGVCSPLAAAAALGIPLTLGSQRLAILPALYH- 160 (238)
T ss_pred HHHHHHHHHcCCeEEEEeCCChHHHHHHHHHHHHHHhcCCCCCEEEECChhHHHHHHHHhCCCeecCCCeEEEEcCCCC-
Confidence 7788877766 89999999999999999999999887 38999999999999986 7899999999998888753321
Q ss_pred CCCchhHHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEec
Q 023387 146 RPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFAR 225 (283)
Q Consensus 146 ~~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~ 225 (283)
.+.+.... ...++.++|+.++..+.+.+.+.+.|+ ..++.+++|
T Consensus 161 -----~~~l~~~l--------------------------~~~~~vVlmk~~~~~~~i~~~L~~~g~-----~~~~~vv~~ 204 (238)
T PRK05948 161 -----LEELEQAL--------------------------TWADVVVLMKVSSVYPQVWQWLKARNL-----LEQASLVER 204 (238)
T ss_pred -----HHHHHHHH--------------------------hCCCEEEEEECCccHHHHHHHHHhCCC-----CCCEEEEEE
Confidence 12222111 012345677777777788887776664 235899999
Q ss_pred cCCCCeEEEEEehhchhhhhcCCCceEEEEeCCC
Q 023387 226 LGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGET 259 (283)
Q Consensus 226 lg~~~E~i~~~tl~el~~~~~~~~~~sliI~~~~ 259 (283)
+|+|+|++++ ++.++...+ .+|+|++|+++.
T Consensus 205 ~~~~~E~i~~-~l~~~~~~~--~~Y~S~iiv~~~ 235 (238)
T PRK05948 205 ATTPEQVIYR-NLEDYPDLR--LPYFSLLIIQKR 235 (238)
T ss_pred CCCCCcEEEe-ehhhcCcCC--CCceEEEEEcCC
Confidence 9999999987 677765443 689999999753
No 10
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=100.00 E-value=2.9e-35 Score=256.24 Aligned_cols=219 Identities=22% Similarity=0.231 Sum_probs=156.2
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCCccccchhhHHHHHHHHHHhccC-
Q 023387 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE- 79 (283)
Q Consensus 2 l~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~i~~~~~~- 79 (283)
||+||+|||||++||+||+++|++||+|+|++.. . .... ++.+. +++........++++.+.+.+.+++
T Consensus 1 v~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~--~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 71 (229)
T TIGR01465 1 VYFIGAGPGDPDLITVKGRKLLESADVILYAGSL--V----PPEL---LAWCRPGAEVVNSAGMSLEEIVDIMSDAHREG 71 (229)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHhCCEEEEeCCC--C----CHHH---HhhCCCCCEEEEcCCCCHHHHHHHHHHHHHCC
Confidence 6999999999999999999999999999987531 1 1111 22111 2222211123456677777776655
Q ss_pred CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCC-chhHHHHhh
Q 023387 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPG-SFYEKIKRN 157 (283)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~-~~~~~l~~~ 157 (283)
++|++|++|||++||++.++++.+.+.|++++++|||||+|++ |++|+||+.++++.++.+.+.|+++. ...+.+...
T Consensus 72 ~~V~~L~~GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a~~g~~l~~~~~~~~~~~~~~~g~~~~~~~~~l~~~ 151 (229)
T TIGR01465 72 KLVVRLHTGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTRAEGRTPMPEGEKLADL 151 (229)
T ss_pred CeEEEEeCcCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHHHcCCCccccCCccEEEEEeccCCCCCCChHHHHHH
Confidence 7999999999999999999999999889999999999999986 88999999888777776666665532 111122211
Q ss_pred hccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEEe
Q 023387 158 RSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAGT 237 (283)
Q Consensus 158 ~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~t 237 (283)
...+ .+.++++..+...++.+.+.+.| +++++++++++|+|+++|+|+.++
T Consensus 152 ~~~~--------------------------~~~vi~~~~~~~~~i~~~L~~~g---~~~~~~v~v~~~l~~~~E~i~~~~ 202 (229)
T TIGR01465 152 AKHG--------------------------ATMAIFLSAHILDKVVKELIEGG---YSEDTPVAVVYRATWPDEKIVRGT 202 (229)
T ss_pred hcCC--------------------------CeEEEECcHHHHHHHHHHHHHcC---cCCCCcEEEEEeCCCCCcEEEEEE
Confidence 1111 11223333355567777776654 566899999999999999999999
Q ss_pred hhchhhh--hcCCCceEEEEeCC
Q 023387 238 MRLLQMV--DFGAPLHCLVIVGE 258 (283)
Q Consensus 238 l~el~~~--~~~~~~~sliI~~~ 258 (283)
++++.+. +......+++|+|+
T Consensus 203 l~~l~~~~~~~~~~~~~~ivvg~ 225 (229)
T TIGR01465 203 LADLADLVREEGIYRTTLILVGP 225 (229)
T ss_pred HHHHHHHHHhcCCCCCEEEEECc
Confidence 9999753 22345679999985
No 11
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=100.00 E-value=3.2e-35 Score=248.49 Aligned_cols=204 Identities=24% Similarity=0.314 Sum_probs=146.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhC-CCccccchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG-KPIALADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~-k~~~~~~~~~~~~~~~~i~~~~~~ 79 (283)
||++||+||||+++||++|+++|++||+|+ |+++.+ +.++.+.. +..... ...+.+..+.+.++.++
T Consensus 1 ~I~vVGiGp~~~~~Lt~~A~~~I~~A~vV~--G~kr~L---------~~~~~~~~~~~~~~~-~~~~~~~l~~i~~~~~g 68 (210)
T COG2241 1 MITVVGIGPGGPEGLTLAAIEAIRRADVVA--GSKRHL---------ELLPPLIKAERIIWP-YPFDAESLEEILAERKG 68 (210)
T ss_pred CEEEEEeCCCChhhhcHHHHHHHHhCCEEe--ecHHHH---------HhhhccccceEEEec-cccchHHHHHHHHHhCC
Confidence 899999999999999999999999999999 655443 33555443 222221 11222234556555557
Q ss_pred CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHHhhh
Q 023387 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNR 158 (283)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~~~ 158 (283)
++||+|++|||+|||.+..+.+.+.. .+++|||||||+|+| |++|++|++. ..+ +.|.++ .+.+....
T Consensus 69 ~~v~VLasGDP~f~G~g~~l~~~~~~--~~v~iIPgiSS~q~a~ARlg~~~~~~-~~i-----slHgr~---~~~l~~~~ 137 (210)
T COG2241 69 RDVVVLASGDPLFSGVGRLLRRKFSC--EEVEIIPGISSVQLAAARLGWPLQDT-EVI-----SLHGRP---VELLRPLL 137 (210)
T ss_pred CCeEEEecCCcchhhhHHHHHHhcCc--cceEEecChhHHHHHHHHhCCChHHe-EEE-----EecCCC---HHHHHHHH
Confidence 99999999999999999888777654 489999999999965 9999999864 222 346666 34443322
Q ss_pred ccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEEeh
Q 023387 159 SLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAGTM 238 (283)
Q Consensus 159 ~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~tl 238 (283)
..+ +.++++. +. -..|+++++.|.+ +|++ +++++|+||||++||||..+++
T Consensus 138 ~~~-~~~vil~-------------------~~-~~~P~~IA~~L~~----~G~~----~~~~~VlE~L~~~~Eri~~~~~ 188 (210)
T COG2241 138 ENG-RRLVILT-------------------PD-DFGPAEIAKLLTE----NGIG----DSRVTVLENLGYPDERITDGTA 188 (210)
T ss_pred hCC-ceEEEeC-------------------CC-CCCHHHHHHHHHh----CCCC----CceEEEEcccCCCchhhhcCch
Confidence 222 3333321 11 2458888888777 7753 7999999999999999999999
Q ss_pred hchhhhhcCCCceEEEEeC
Q 023387 239 RLLQMVDFGAPLHCLVIVG 257 (283)
Q Consensus 239 ~el~~~~~~~~~~sliI~~ 257 (283)
+++...+| .++++++|..
T Consensus 189 ~~~~~~~f-sdlnVv~v~~ 206 (210)
T COG2241 189 EDIAAEEF-SDLNVVAVEK 206 (210)
T ss_pred hhhccccc-CCceEEEEEc
Confidence 99887766 4565555543
No 12
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=100.00 E-value=9.5e-35 Score=257.07 Aligned_cols=235 Identities=18% Similarity=0.154 Sum_probs=155.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCCccccchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~i~~~~~~ 79 (283)
+||+||+|||||++||++|+++|++||+|++++.. + .... ++.+. .+.........++++.+.+.+.+++
T Consensus 9 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~--~----~~~l---~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 79 (257)
T PRK15473 9 CVWFVGAGPGDKELITLKGYRLLQQAQVVIYAGSL--I----NTEL---LDYCPAQAECHDSAELHLEQIIDLMEAGVKA 79 (257)
T ss_pred EEEEEEeCCCChHHhhHHHHHHHHhCCEEEEeccc--C----CHHH---HhhcCCCCEEEecCCCCHHHHHHHHHHHHHC
Confidence 49999999999999999999999999999987521 1 1111 22111 1111111123456777777776655
Q ss_pred -CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCC-chhHHHHh
Q 023387 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPG-SFYEKIKR 156 (283)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~-~~~~~l~~ 156 (283)
++||+|++|||++||++.++++.+.+.++++|++|||||+|++ |++|+||+..+..-.+.+.+.|+++. ...+.+..
T Consensus 80 g~~Vv~L~sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~v~s~hG~~~~~~~~~l~~ 159 (257)
T PRK15473 80 GKTVVRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYTVPEVSQSLIITRMEGRTPVPAREQLES 159 (257)
T ss_pred CCeEEEEeCcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHHHcCCCcccccccccEEEEeecCCCCCCchhhHHH
Confidence 8999999999999999999999999889999999999999976 88999998533222222223455432 11112221
Q ss_pred hhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEE
Q 023387 157 NRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAG 236 (283)
Q Consensus 157 ~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~ 236 (283)
... ...+++ +++..+..+++.+.+.+.| +++++++++++|+|+|+|+|+.+
T Consensus 160 ~~~-~~~t~v-------------------------i~~~~~~~~~i~~~L~~~g---~~~~~~v~v~e~l~~~~E~i~~~ 210 (257)
T PRK15473 160 FAS-HQTSMA-------------------------IFLSVQRIHRVAERLIAGG---YPATTPVAVIYKATWPESQTVRG 210 (257)
T ss_pred Hhc-CCCeEE-------------------------EECCchhHHHHHHHHHHcC---CCCCCeEEEEEECCCCCcEEEEE
Confidence 111 111222 2223333555555555454 56789999999999999999999
Q ss_pred ehhchhhh--hcCCCceEEEEeCCCChhHHHHHhhccCC
Q 023387 237 TMRLLQMV--DFGAPLHCLVIVGETHPVEEEMLDFYRLT 273 (283)
Q Consensus 237 tl~el~~~--~~~~~~~sliI~~~~~~~~~~~~~~~~~~ 273 (283)
+++++.+. +......+++++|+.-....+.-++|+.+
T Consensus 211 tl~~l~~~~~~~~~~~~~~ivvG~~~~~~~~~~~~~~~~ 249 (257)
T PRK15473 211 TLADIAEKVRDAGIRKTALILVGNFLGEEYHYSKLYDAD 249 (257)
T ss_pred EHHHHHHHHHhcCCCCCEEEEEchhccCCCCcccccCCC
Confidence 99998652 11234568999985322223334666654
No 13
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=100.00 E-value=1.3e-34 Score=253.70 Aligned_cols=211 Identities=17% Similarity=0.216 Sum_probs=147.1
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhC--CCc---cc---cc----------
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG--KPI---AL---AD---------- 62 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~--k~~---~~---~~---------- 62 (283)
.||+||+||||||+||+||+++|++||+|++|..... ...++++++.+.. +++ .+ .+
T Consensus 4 ~l~~VG~GPGdp~LlTlkA~~~L~~advi~~~~~~~~-----~~~a~~i~~~~~~~~~~~~~~~~pm~~~~~~~~~~~~~ 78 (241)
T PRK05990 4 RLIGLGVGPGDPELLTLKALRLLQAAPVVAYFVAKGK-----KGNAFGIVEAHLSPGQTLLPLVYPVTTEILPPPLCYET 78 (241)
T ss_pred eEEEEeCCCCChHHhhHHHHHHHhhCCEEEEECCCCC-----cchHHHHHHHHcCCCceEEEeecCCccccccccchhhh
Confidence 3899999999999999999999999999999853210 0112233444321 111 11 11
Q ss_pred --hhhHHHHHHHHHHhccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEE
Q 023387 63 --REMVEEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSI 138 (283)
Q Consensus 63 --~~~~~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i 138 (283)
...|+++++.+.+.+++ ++||+|++|||++||++.++.+.+. .++++||||||||++++ |++|+||++.++.+++
T Consensus 79 ~~~~~~~~~~~~i~~~~~~G~~Vv~L~~GDP~iyst~~~l~~~l~-~~i~~evIPGISS~~aaaA~~gipL~~~~~~~~i 157 (241)
T PRK05990 79 VIADFYDTSAEAVAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLA-PRYETEVIPGVCSMLGCWSVLGAPLVYRNQSLSV 157 (241)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcHHHhHHHHHHHHHh-cCCCEEEECcHHHHHHHHHHhCCCeEcCCeEEEE
Confidence 23467777888888766 8999999999999999999998885 47999999999999986 8899999988888887
Q ss_pred ecccCCCCCCchhHHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCc
Q 023387 139 PFFTETWRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDT 218 (283)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~ 218 (283)
+.... + .+.+...... +++.+.|+.++..+.+.+.+.+.|+ ..
T Consensus 158 ~~~~~---~---~~~l~~~l~~--------------------------~~~~vv~k~~~~~~~i~~~L~~~g~-----~~ 200 (241)
T PRK05990 158 LSGVL---P---EEELRRRLAD--------------------------ADAAVIMKLGRNLDKVRRVLAALGL-----LD 200 (241)
T ss_pred EcCCC---C---hHHHHHHHhC--------------------------CCCEEEEEeCCcHHHHHHHHHHcCC-----CC
Confidence 64221 1 1222221111 1112334444555667777766664 23
Q ss_pred eEEEEeccCCCCeEEEEEehhchhhhhcCCCceEEEEeCC
Q 023387 219 LCVGFARLGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGE 258 (283)
Q Consensus 219 ~v~v~e~lg~~~E~i~~~tl~el~~~~~~~~~~sliI~~~ 258 (283)
++++++|+|+|+|+++. ..++...+ .+|+|++|+++
T Consensus 201 ~~~~v~~~~~~~E~i~~--~~~~~~~~--~~Y~s~iiv~~ 236 (241)
T PRK05990 201 RALYVERATMANQRIVP--LAEVDPMA--SPYFSLILVPG 236 (241)
T ss_pred CEEEEEECCCCCeEEEE--ccccCCCC--CCceEEEEEec
Confidence 57778999999999985 44544333 68999999975
No 14
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=100.00 E-value=2.3e-34 Score=251.58 Aligned_cols=220 Identities=22% Similarity=0.267 Sum_probs=149.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHH----H-hCCCccccchhhHHHHHHHHHH
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEK----L-YGKPIALADREMVEEKADKILS 75 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~----~-~~k~~~~~~~~~~~~~~~~i~~ 75 (283)
.||+||+|||||++||++|+++|++||+|+++.+.+ .+.++.++. + .+++... ....+++..+.+.+
T Consensus 1 ~i~iVG~GpG~~~~lT~~a~~~l~~advI~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~ 72 (236)
T TIGR01469 1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYDALVS-------PEILAYAPPQAELIDVGKRPGC-HSKKQEEINRLLVE 72 (236)
T ss_pred CEEEEecCCCChHHhHHHHHHHHHhCCEEEEeCCCC-------HHHHhhCCCCCEEEeCCCCCCC-CCCCHHHHHHHHHH
Confidence 489999999999999999999999999999866431 111111110 0 0111001 11235566666666
Q ss_pred hccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHH
Q 023387 76 ESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEK 153 (283)
Q Consensus 76 ~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~ 153 (283)
.+++ ++|++|++|||++|+++.++++.+.+.+++++++|||||+|++ |++|+||+.++.+..+.+.+.|+++.+....
T Consensus 73 ~~~~g~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~~~i~~~~~~~~~~~~~ 152 (236)
T TIGR01469 73 LAREGKKVVRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEADDKALEV 152 (236)
T ss_pred HHHCCCeEEEEeCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCCcceEEEEEcccCCCccccc
Confidence 6554 8999999999999999999999998888999999999999976 8899999987753344444556654321100
Q ss_pred HHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEE
Q 023387 154 IKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMI 233 (283)
Q Consensus 154 l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i 233 (283)
...+...+.++++++ + ......++.+.+.+.| +++++++++++|+|+++|++
T Consensus 153 ~~~~~~~~~~~~vl~------------------------~-~~~~~~~i~~~L~~~g---~~~~~~~~v~~~lg~~~E~i 204 (236)
T TIGR01469 153 DWEALAKGAGTLVIY------------------------M-GVRNLPEIAKELIEHG---RSPDTPVAVVEWATTPNQRV 204 (236)
T ss_pred CHHHHhcCCCeEEEE------------------------C-CHHHHHHHHHHHHHcC---CCCCCcEEEEEECCCCCcEE
Confidence 011112222344332 2 2233445555555444 56689999999999999999
Q ss_pred EEEehhchhh----hhcCCCceEEEEeCC
Q 023387 234 VAGTMRLLQM----VDFGAPLHCLVIVGE 258 (283)
Q Consensus 234 ~~~tl~el~~----~~~~~~~~sliI~~~ 258 (283)
+.++++|+.+ .++ ...+++++|+
T Consensus 205 ~~~~l~el~~~~~~~~~--~~~~vvivg~ 231 (236)
T TIGR01469 205 LIGTLGDLAEKAAEANL--KSPALIVIGE 231 (236)
T ss_pred EEEEHHHHHHHHHhcCC--CCCEEEEEcc
Confidence 9999999975 233 3458888875
No 15
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=100.00 E-value=1.8e-34 Score=251.46 Aligned_cols=214 Identities=26% Similarity=0.304 Sum_probs=147.0
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhC---CCcc-----c-cc----hhhHH
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG---KPIA-----L-AD----REMVE 67 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~---k~~~-----~-~~----~~~~~ 67 (283)
|||+||+|||||++||++|+++|++||+|+++.+..-- ....++++..+.. +++. . .+ ...++
T Consensus 2 ~i~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (230)
T TIGR01467 2 KLYGVGVGPGDPELITVKALEALRSADVIAVPASKKGR----ESLARKIVEDYLKPNDTRILELVFPMTKDRDELEKAWD 77 (230)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHhhCCEEEEeCCCCCC----cchHHHHHHHhcCccCceEEEEeccccCChHHHHHHHH
Confidence 69999999999999999999999999999998753210 0012233444432 2221 1 11 12355
Q ss_pred HHHHHHHHhccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCC
Q 023387 68 EKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 145 (283)
Q Consensus 68 ~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~ 145 (283)
++++.+.+.+++ ++||+|++|||++|+++.++++.+.+.+++++++|||||+|++ |++|+||+..+..++++. .+.
T Consensus 78 ~~~~~i~~~~~~g~~Vv~l~~GDP~~y~~~~~l~~~~~~~~~~veviPGiSs~~~a~a~~g~~l~~~~~~~~~~~--~~~ 155 (230)
T TIGR01467 78 EAAEAVAAELEEGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVEGDESLAILP--ATA 155 (230)
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCCCcccCHHHHHHHHHHCCCcEEEeCChhHHHHHHHHhCCCcccCCceEEEEe--CCC
Confidence 666777776665 8999999999999999999999998778999999999999976 889999998767666653 221
Q ss_pred CCCchhHHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEec
Q 023387 146 RPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFAR 225 (283)
Q Consensus 146 ~~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~ 225 (283)
. .+.+......+ .++++ ++..+....+.+.+.+.|. +.++++++|
T Consensus 156 ~----~~~~~~~~~~~-~~vvi-------------------------l~~~~~~~~i~~~L~~~g~-----~~~v~v~e~ 200 (230)
T TIGR01467 156 G----EAELEKALAEF-DTVVL-------------------------MKVGRNLPQIKEALAKLGR-----LDAAVVVER 200 (230)
T ss_pred C----HHHHHHHhccC-CeEEE-------------------------EecCCCHHHHHHHHHHcCC-----cccEEEEEE
Confidence 1 12222222222 22332 2222222334444444553 457999999
Q ss_pred cCCCCeEEEEEehhchhhhhcCCCceEEEEeCC
Q 023387 226 LGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGE 258 (283)
Q Consensus 226 lg~~~E~i~~~tl~el~~~~~~~~~~sliI~~~ 258 (283)
+|+|+|+++.+ +.++.+.+ .+|+|++|+++
T Consensus 201 l~~~~E~i~~~-~~~~~~~~--~~y~s~~i~~~ 230 (230)
T TIGR01467 201 ATMPDEKIVDL-VREAIDDA--LPYFSTILVRR 230 (230)
T ss_pred CCCCCcEEEcc-ccccCCCC--CCeeEEEEecC
Confidence 99999999986 77774443 68999999863
No 16
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=100.00 E-value=5.4e-34 Score=253.06 Aligned_cols=220 Identities=23% Similarity=0.247 Sum_probs=151.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCCcc------ccchhhHHHHHHHH
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIA------LADREMVEEKADKI 73 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~~~------~~~~~~~~~~~~~i 73 (283)
+||+||+|||||++||++|+++|++||+|+++.+.. .+. ++.+. ++... ......+++..+.+
T Consensus 16 ~l~vVG~GpGdp~~LTl~a~~~l~~ADvI~~~~~~~-------~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (263)
T PLN02625 16 NVFLVGTGPGDPDLLTLKALRLLQTADVVLYDRLVS-------PDI---LDLVPPGAELLYVGKRGGYHSRTQEEIHELL 85 (263)
T ss_pred EEEEEEeCCCChHHhHHHHHHHHhcCCEEEEeCcCC-------HHH---HHhcCCCCEEEecCCcCCccccCHHHHHHHH
Confidence 489999999999999999999999999999876421 111 11111 11110 01112455666666
Q ss_pred HHhccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchh
Q 023387 74 LSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFY 151 (283)
Q Consensus 74 ~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~ 151 (283)
.+.+.+ ++|++|++|||++|+++.++++.+.+.|++++|+|||||+|+| |++|+||++.+++.++.+.+.|+++....
T Consensus 86 ~~~~~~g~~Vvvl~~GDP~~ys~~~~l~~~l~~~~~~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~i~s~h~~~~~~~ 165 (263)
T PLN02625 86 LSFAEAGKTVVRLKGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRFLTGHDREGGTD 165 (263)
T ss_pred HHHHHCCCeEEEEcCCCchhhhhHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCccceEEEEecccCCCccc
Confidence 666544 8999999999999999999999998889999999999999976 88999999877544555556676542210
Q ss_pred H-HHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCC
Q 023387 152 E-KIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSED 230 (283)
Q Consensus 152 ~-~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~ 230 (283)
. ........+.+++++ |+......++.+.+.+.| +++++++++++|+|+++
T Consensus 166 ~~~~~~~~~~~~~t~vl-------------------------~~~~~~~~~i~~~L~~~g---~~~~~~v~v~e~l~~~~ 217 (263)
T PLN02625 166 PLDVAEAAADPDTTLVV-------------------------YMGLGTLPSLAEKLIAAG---LPPDTPAAAVERGTTPE 217 (263)
T ss_pred chhhHHHHhCCCCeEEE-------------------------ECchhhHHHHHHHHHHcC---CCCCCeEEEEEECCCCC
Confidence 0 001111112223332 333344455555555444 56689999999999999
Q ss_pred eEEEEEehhchhhhh--cCCCceEEEEeCC
Q 023387 231 QMIVAGTMRLLQMVD--FGAPLHCLVIVGE 258 (283)
Q Consensus 231 E~i~~~tl~el~~~~--~~~~~~sliI~~~ 258 (283)
|+|++++++++.+.. ......++|++|+
T Consensus 218 E~i~~~tl~el~~~~~~~~~~~~~vviig~ 247 (263)
T PLN02625 218 QRVVFGTLEDIAEDVAAAGLVSPTVIVVGE 247 (263)
T ss_pred cEEEEEEHHHHHHHHHhcCCCCCEEEEEch
Confidence 999999999997631 2234567788874
No 17
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=100.00 E-value=6e-34 Score=244.65 Aligned_cols=220 Identities=23% Similarity=0.300 Sum_probs=162.0
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHH-----HhCCCccccchhhHHHHHHHHHHh
Q 023387 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEK-----LYGKPIALADREMVEEKADKILSE 76 (283)
Q Consensus 2 l~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~-----~~~k~~~~~~~~~~~~~~~~i~~~ 76 (283)
+|+||.|||||++||+||.++|++||+|+|+...+ .+.++.+.. +.+|+.-- .....+++.+.+.+.
T Consensus 6 V~lVGAGPGdp~LLTlka~~~L~~ADvvlyD~LV~-------~~il~~~~~~a~~i~vGkr~g~-~~~~q~eIn~~lv~~ 77 (244)
T COG0007 6 VYLVGAGPGDPGLLTLRALRALQEADVVLYDRLVP-------EEVLALARRDAERIYVGKRPGG-HSKPQDEINALLVEL 77 (244)
T ss_pred EEEEecCCCChhhhhHHHHHHHhhCCEEEEcCcCC-------HHHHHhhccCCEEEEecCcCCC-CCCCHHHHHHHHHHH
Confidence 79999999999999999999999999999987532 233222211 11332211 112345677778887
Q ss_pred ccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHH
Q 023387 77 SQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKI 154 (283)
Q Consensus 77 ~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l 154 (283)
+++ ++|++|+.|||++|+++.+.++.+.++|+++||+|||||..++ +..|+|+++.+.+.++.+.+.|..+..
T Consensus 78 a~~G~~VVRLKgGDP~iFGRggEE~~~l~~~gI~~eVVPGiTSa~a~~a~agIPlT~R~~a~s~~~vTgh~~~~~----- 152 (244)
T COG0007 78 AREGKRVVRLKGGDPYIFGRGGEEIEALAEAGIEFEVVPGITSAIAAPAYAGIPLTHRGVASSFTFVTGHDRDGK----- 152 (244)
T ss_pred HhcCCeEEEecCCCCCeecCcHHHHHHHHHcCCceEEeCccchHHHHHHHcCCceeecCccceEEEEeCcCCCCC-----
Confidence 776 8999999999999999999999999999999999999999987 789999999988888888888755422
Q ss_pred HhhhccCccceEeeecccccchhhhhhcCccccCC-cccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEE
Q 023387 155 KRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEP-PRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMI 233 (283)
Q Consensus 155 ~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i 233 (283)
-+|+.|++.. +| +.+|..+ .+..+.+.|.+.| .++++|++++++.++++|++
T Consensus 153 --------------------~~w~~la~~~---~TlVi~Mg~~-~l~~i~~~Li~~G---~~~~tpvAvi~~gt~~~Qr~ 205 (244)
T COG0007 153 --------------------LDWEALARSV---GTLVILMGAS-RLAEIARELIAHG---RSPDTPVAVIENGTTPDQRV 205 (244)
T ss_pred --------------------cChHHhcccC---CCEEEEeCcc-hHHHHHHHHHHcC---CCCCCCEEEEEcCCCcceEE
Confidence 0223333210 11 2355543 3344444444455 46799999999999999999
Q ss_pred EEEehhchhhhh--cCCCceEEEEeCCCCh
Q 023387 234 VAGTMRLLQMVD--FGAPLHCLVIVGETHP 261 (283)
Q Consensus 234 ~~~tl~el~~~~--~~~~~~sliI~~~~~~ 261 (283)
+.+||+++.+.. ......+++++|+.-.
T Consensus 206 ~~gtL~~l~~~~~~~~~~~PaiiviG~vv~ 235 (244)
T COG0007 206 VVGTLGDLAELAEEAGLTPPALIVIGEVVN 235 (244)
T ss_pred EEeEHHHHHHHHHhcCCCCCEEEEEcceee
Confidence 999999997742 2345579999996544
No 18
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=100.00 E-value=5.9e-34 Score=244.82 Aligned_cols=205 Identities=24% Similarity=0.296 Sum_probs=139.6
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CC-CccccchhhHHHHHHHHHHhcc
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GK-PIALADREMVEEKADKILSESQ 78 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k-~~~~~~~~~~~~~~~~i~~~~~ 78 (283)
|||+||+|||||++||+||+++|++||+|+++.. .++.++.+. ++ .+...+ .++..+.+....+
T Consensus 1 ~l~vVG~GpG~~~~lT~~a~~~l~~advv~~~~~-----------~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~ 66 (210)
T PRK05787 1 MIYIVGIGPGDPEYLTLKALEAIRKADVVVGSKR-----------VLELFPELIDGEAFVLTAG---LRDLLEWLELAAK 66 (210)
T ss_pred CEEEEEeCCCChHHhhHHHHHHHHhCCEEEEcHh-----------HHHHHHHhccCccEEecCC---HHHHHHHHHHhhC
Confidence 8999999999999999999999999999997541 222355443 22 222211 2334444443334
Q ss_pred CCCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHHhh
Q 023387 79 ESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRN 157 (283)
Q Consensus 79 ~~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~~ 157 (283)
+++|+++++|||++||.+..+.+.+ ..+++++++|||||+|++ |++|+||++. ..+ +.|.++... +.+...
T Consensus 67 g~~V~~l~~GDP~~~~~~~~~~~~~-~~~~~veviPGiSs~~aaaa~~g~~l~~~---~~i---s~~~~~~~~-~~l~~~ 138 (210)
T PRK05787 67 GKNVVVLSTGDPLFSGLGKLLKVRR-AVAEDVEVIPGISSVQYAAARLGIDMNDV---VFT---TSHGRGPNF-EELEDL 138 (210)
T ss_pred CCcEEEEecCCccccccHHHHHHHh-ccCCCeEEEcCHHHHHHHHHHhCCCHHHc---EEE---eecCCCcch-HHHHHH
Confidence 5899999999999999776665544 334899999999999976 8899999863 222 235554322 234433
Q ss_pred hccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEEe
Q 023387 158 RSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAGT 237 (283)
Q Consensus 158 ~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~t 237 (283)
...+.+++++.+.. ..+.++.+.|.+ .| ++++++++++|+|+|+|+|+.++
T Consensus 139 ~~~~~~~v~l~~~~---------------------~~~~~i~~~L~~----~g----~~~~~~~v~~~l~~~~E~i~~~~ 189 (210)
T PRK05787 139 LKNGRKVIMLPDPR---------------------FGPKEIAAELLE----RG----KLERRIVVGENLSYPDERIHKLT 189 (210)
T ss_pred HHcCCeEEEEcCCC---------------------CCHHHHHHHHHh----CC----CCCcEEEEEEeCCCCCeEEEeCC
Confidence 33444555443221 234555555444 44 34899999999999999999999
Q ss_pred hhchhhhhcCCCceEEEEeCC
Q 023387 238 MRLLQMVDFGAPLHCLVIVGE 258 (283)
Q Consensus 238 l~el~~~~~~~~~~sliI~~~ 258 (283)
++++.+.+ .++++++++.+
T Consensus 190 l~~~~~~~--~~~~s~v~v~~ 208 (210)
T PRK05787 190 LSEIEPLE--FSDMSVVVILD 208 (210)
T ss_pred HHHHhhcc--cCCcEEEEEec
Confidence 99887655 45778877753
No 19
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional
Probab=100.00 E-value=1.2e-33 Score=247.24 Aligned_cols=213 Identities=17% Similarity=0.200 Sum_probs=142.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCCccccchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~i~~~~~~ 79 (283)
|||+||+||||||+||+||+++|++||+|+++.. +. +.++++. +++++........+..+.+.+.+++
T Consensus 1 ml~~VG~GPGdp~lLTlrA~~~L~~ADvVv~~~~--~~---------~lv~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 69 (241)
T PRK15478 1 MLSVIGIGPGSQAMMTMEAIEALQAAEIVVGYKT--YT---------HLVKAFTGDKQVIKTGMCKEIERCQAAIELAQA 69 (241)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHcCCEEEEcCc--HH---------HHHHhhcCCCEEEECCCchHHHHHHHHHHHHHC
Confidence 8999999999999999999999999999997652 11 1133332 2222221111122333455565655
Q ss_pred -CCEEEEecCCCCCCccHHHHHHHHHhCC--CcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHH
Q 023387 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLG--IQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIK 155 (283)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~l~~~~--~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~ 155 (283)
++|++|++|||++|+++.++.+.+.+.+ ++++++|||||++++ |++|+||++.....++. ....| ++.+.
T Consensus 70 g~~Vv~L~sGDP~~~g~~~~~~~~l~~~~~~~~veviPGiSs~~aaaa~~g~plt~~~~~~s~~---~~~~~---~~~~~ 143 (241)
T PRK15478 70 GHNVALISSGDAGIYGMAGLVLELVSKQKLDVEVRLIPGMTASIAAASLLGAPLMHDFCHISLS---DLLTP---WPVIE 143 (241)
T ss_pred CCeEEEEECCCCCcchhHHHHHHHHHhcCCCCcEEEeCCHHHHHHHHHHhCCCcccCcceeecc---cCCCC---cHHHH
Confidence 8999999999999999999999987654 669999999999976 88999997654433332 10112 22211
Q ss_pred h---hhccCccceEeeecccccchhhhhhcCccccCCcccccHHH----HHHHHHHHHHHcCCCCCCCCceEEEEeccCC
Q 023387 156 R---NRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNI----AIEQLLEVELLQGESVYNEDTLCVGFARLGS 228 (283)
Q Consensus 156 ~---~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~ 228 (283)
. +....-.++++ ||..++ .++...+.++ .++++++|+++++++|+
T Consensus 144 ~~~~a~~~~~~tlvl------------------------ym~~~~~~~~~l~~~~~ll~----~g~~~~tPvaiv~~~t~ 195 (241)
T PRK15478 144 KRIVAAGEADFVICF------------------------YNPRSRGREGHLARAFDLLA----ASKSAQTPVGVVKSAGR 195 (241)
T ss_pred HhHHHHhcCCeEEEE------------------------ECCcccccHHHHHHHHHHHH----ccCCCCCEEEEEEeCCC
Confidence 1 11111112222 343322 1222233332 35788999999999999
Q ss_pred CCeEEEEEehhchhhhhcCCCceEEEEeCCCC
Q 023387 229 EDQMIVAGTMRLLQMVDFGAPLHCLVIVGETH 260 (283)
Q Consensus 229 ~~E~i~~~tl~el~~~~~~~~~~sliI~~~~~ 260 (283)
++|+++.+||+++.... ..+.+++|+|+..
T Consensus 196 ~~q~~~~~tL~~l~~~~--~~~~~liivG~~~ 225 (241)
T PRK15478 196 KKEEKWLTTLGDMDFEP--VDMTSLVIVGNKT 225 (241)
T ss_pred CCeEEEEEEHHHhhhcC--CCCceEEEECCee
Confidence 99999999999997643 5678999999643
No 20
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=100.00 E-value=6.9e-34 Score=247.61 Aligned_cols=210 Identities=24% Similarity=0.247 Sum_probs=144.9
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCC--Cccc------cc----hhhHHH
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGK--PIAL------AD----REMVEE 68 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k--~~~~------~~----~~~~~~ 68 (283)
|||+||+|||||++||++|+++|++||+|+++.++..- ....++.++.+.++ ++.. .+ ...|++
T Consensus 3 ~l~vVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (229)
T PRK05576 3 KLYGIGLGPGDPELLTVKAARILEEADVVYAPASRKGG----GSLALNIVRPYLKEETEIVELHFPMSKDEEEKEAVWKE 78 (229)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHhcCCEEEEECCCCCc----hhHHHHHHHHhcCCCCEEEEeeCCCCCChHHHHHHHHH
Confidence 59999999999999999999999999999998543210 00111234444322 1111 11 234556
Q ss_pred HHHHHHHhccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCC
Q 023387 69 KADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWR 146 (283)
Q Consensus 69 ~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~ 146 (283)
..+.+.+.+++ ++|++|++|||++|+++.++.+.+.+.+++++|+|||||+|++ |++|+||+..++.+.++.. |.
T Consensus 79 ~~~~i~~~~~~g~~V~~l~~GDP~~y~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~iis~--~~- 155 (229)
T PRK05576 79 NAEEIAAEAEEGKNVAFITLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAMGDESLAIIPA--TR- 155 (229)
T ss_pred HHHHHHHHHHcCCcEEEEeCcCccccccHHHHHHHHHhCCCCEEEeCChhHHHHHHHHcCCCcccCCceEEEEEC--CC-
Confidence 67777766655 7999999999999999999999998778999999999999976 8899999987776666532 32
Q ss_pred CCchhHHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEecc
Q 023387 147 PGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARL 226 (283)
Q Consensus 147 ~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~l 226 (283)
.+.+......+ .+++++ +.....+.+.+.+.+.+ .++++++|+
T Consensus 156 ----~~~l~~~l~~~-~~~vl~-------------------------~~~~~~~~i~~~l~~~~-------~~v~v~e~l 198 (229)
T PRK05576 156 ----EALIEQALTDF-DSVVLM-------------------------KVYKNFALIEELLEEGY-------LDALYVRRA 198 (229)
T ss_pred ----HHHHHHHhhcC-CEEEEE-------------------------ecCCCHHHHHHHHHhcC-------CCEEEEEEC
Confidence 12222222112 333332 22223333444443222 289999999
Q ss_pred CCCCeEEEEEehhchhhhhcCCCceEEEEeCC
Q 023387 227 GSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGE 258 (283)
Q Consensus 227 g~~~E~i~~~tl~el~~~~~~~~~~sliI~~~ 258 (283)
|+|+|+|++++..++. + .+|+|++|+.+
T Consensus 199 ~~~~E~i~~~~~~~~~--~--~~y~s~ii~~~ 226 (229)
T PRK05576 199 YMEGEQILRRLEEILD--D--LDYFSTIIANR 226 (229)
T ss_pred CCCCeEEEccccccCC--C--CCeeEEEEEec
Confidence 9999999998777653 2 58999999863
No 21
>PRK10637 cysG siroheme synthase; Provisional
Probab=100.00 E-value=2.2e-33 Score=266.93 Aligned_cols=232 Identities=22% Similarity=0.271 Sum_probs=160.1
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhH----HHh-CCCccccchhhHHHHHHHHHH
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLE----KLY-GKPIALADREMVEEKADKILS 75 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~----~~~-~k~~~~~~~~~~~~~~~~i~~ 75 (283)
+||+||+|||||++||++|+++|++||+|+++.+... ..++.+. .+. ++.... ....+++..+.+.+
T Consensus 217 ~l~iVG~GpGdp~lLTl~A~~~L~~ADvV~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~ 288 (457)
T PRK10637 217 EVVLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSD-------DIMNLVRRDADRVFVGKRAGY-HCVPQEEINQILLR 288 (457)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHHcCCEEEECCCCCH-------HHHhhcccCCEEEEcCCCCCC-CCcCHHHHHHHHHH
Confidence 4899999999999999999999999999998664321 1100011 000 111000 11134566677776
Q ss_pred hccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHH
Q 023387 76 ESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEK 153 (283)
Q Consensus 76 ~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~ 153 (283)
.+.+ ++|++|++|||++||++.++++.+.+.+++++|+|||||+|++ |++|+||+.++++.++.+.+.|+++....+
T Consensus 289 ~~~~G~~Vv~L~sGDP~~yg~~~~l~~~l~~~gi~vevVPGISS~~aAaA~~g~pl~~~~~~~~~~vis~h~~~~~~~~- 367 (457)
T PRK10637 289 EAQKGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGGELD- 367 (457)
T ss_pred HHhCCCEEEEEeCCCccccccHHHHHHHHHhCCCCEEEECCHhHHHHHHHHcCCCcccCCceeeEEEEeCccCCCCccC-
Confidence 6655 7899999999999999999999998889999999999999976 889999998876555555566765432111
Q ss_pred HHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEE
Q 023387 154 IKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMI 233 (283)
Q Consensus 154 l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i 233 (283)
+ .+...+.+|++++ |.. ..+..+.+.+.+.| +++++++++++|+|+|+|++
T Consensus 368 ~-~~l~~~~~t~Vl~------------------------~~~-~~~~~i~~~L~~~g---~~~~~~v~v~e~l~~~~E~i 418 (457)
T PRK10637 368 W-ENLAAEKQTLVFY------------------------MGL-NQAATIQQKLIEHG---MPADMPVALVENGTSVTQRV 418 (457)
T ss_pred H-HHHhCCCCeEEEE------------------------CCH-hhHHHHHHHHHhcC---CCCCCcEEEEEeCCCCCcEE
Confidence 1 1112233555543 222 23344555554444 56789999999999999999
Q ss_pred EEEehhchhhhhcCCCceEEEEeCCCChhHHHHHhhcc
Q 023387 234 VAGTMRLLQMVDFGAPLHCLVIVGETHPVEEEMLDFYR 271 (283)
Q Consensus 234 ~~~tl~el~~~~~~~~~~sliI~~~~~~~~~~~~~~~~ 271 (283)
+.++++++.+......+++++++|+... .++.+.||+
T Consensus 419 ~~~tl~el~~~~~~~~~~~viiig~~~~-~~~~~~~~~ 455 (457)
T PRK10637 419 VSGTLTQLGELAQQVNSPSLIIVGRVVG-LRDKLNWFS 455 (457)
T ss_pred EEEEHHHHHHHHhcCCCCEEEEEChhhc-hhhhhhhhh
Confidence 9999999975321245679999996544 466666654
No 22
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=100.00 E-value=3.3e-33 Score=239.72 Aligned_cols=198 Identities=32% Similarity=0.328 Sum_probs=140.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhC-----CCccccchhhHHHHHHHH--
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG-----KPIALADREMVEEKADKI-- 73 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~-----k~~~~~~~~~~~~~~~~i-- 73 (283)
|||+||+|||||++||++|+++|++||+|+++.. .++.+..+.. ..........+++..+.+
T Consensus 1 ~l~iVG~GpG~~~~lT~~a~~~l~~advv~~~~r-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 69 (210)
T PF00590_consen 1 KLYIVGLGPGDPDLLTLRALEALKNADVVIGPER-----------ALEIVRDLLPEIFPMGKDRESLEESYDEIAEIIEA 69 (210)
T ss_dssp EEEEEEEBSSSGGGSBHHHHHHHHHSSEEEEETT-----------CHHHHHHHHHTEETTSSEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHhCCccccccc-----------chHHHHhhccccccccccccchhhhhhHHHHHHHH
Confidence 8999999999999999999999999999998762 1122444321 010011133566677777
Q ss_pred HHhccC-CCEEEEecCCCCCCccHHHHHHHHHh--CCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCc
Q 023387 74 LSESQE-SNVAFLVVGDPFGATTHTDLVVRAKK--LGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGS 149 (283)
Q Consensus 74 ~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~--~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~ 149 (283)
.+.+++ ++|++|++|||++|+++.++.+.+.+ .|++++++|||||++++ |++|+||+..+....+. .++..
T Consensus 70 ~~~~~~g~~V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~~g~~~~~~~~~~~~~-----~~~~~ 144 (210)
T PF00590_consen 70 IEAAKEGKDVVVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAARLGIPLTDGGFISLHG-----LRDLD 144 (210)
T ss_dssp HHHHHTTSEEEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHHCTSTSSBTTTBEEEE-----TSSSS
T ss_pred HHHHhccCCEEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHHHcCCcccCcEEEEEE-----ecccc
Confidence 666655 88999999999999999999999988 89999999999999976 88999999887666654 11111
Q ss_pred -hhHHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCC
Q 023387 150 -FYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGS 228 (283)
Q Consensus 150 -~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~ 228 (283)
.......+.....++++++... . .+.++++.|.+ . .+++++++++++++|+
T Consensus 145 ~~~~~~l~~~~~~~~~~vil~~~--------------------~-~~~~i~~~L~~----~---~~~~~~~v~v~~~lg~ 196 (210)
T PF00590_consen 145 TEREKLLENLLANGDTLVILTDP--------------------R-RLAEIAELLLE----R---LYPPDTPVAVGERLGY 196 (210)
T ss_dssp HHHHHHHHHHHTTTSEEEEEESG--------------------C-CHHHHHHHHHH----H---SHTTTSEEEEEESTTS
T ss_pred cchHHHHHHHHhCCCEEEEEccC--------------------c-hHHHHHHHHHh----h---CCCCCcEEEHHHhcCC
Confidence 1122222222334565554321 1 35556555555 3 1345789999999999
Q ss_pred CCeEEEEEehhchh
Q 023387 229 EDQMIVAGTMRLLQ 242 (283)
Q Consensus 229 ~~E~i~~~tl~el~ 242 (283)
|+|+|++++++|++
T Consensus 197 ~~E~i~~~tl~ela 210 (210)
T PF00590_consen 197 PDERIFRGTLEELA 210 (210)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCCEEEEeEHHHcC
Confidence 99999999999874
No 23
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=100.00 E-value=7.3e-33 Score=243.41 Aligned_cols=216 Identities=16% Similarity=0.174 Sum_probs=140.9
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCCccccchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~i~~~~~~ 79 (283)
|||+||+|||||++||+||+++|++||+|+++.. .. +.++.+. ++++...+........+.+.+.+++
T Consensus 3 ~v~iVG~GpGdp~~lT~ra~~~L~~AdvV~~~~~--~~---------~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 71 (246)
T PRK05765 3 KLYIVGIGPGSKEQRTIKAQEAIEKSNVIIGYNT--YL---------RLISDLLDGKEVIGARMKEEIFRANTAIEKALE 71 (246)
T ss_pred EEEEEEcCCCChHHhhHHHHHHHHhCCEEEEccC--HH---------HHHHHhcCCCEEecCCchHHHHHHHHHHHHHHC
Confidence 5999999999999999999999999999997653 11 1133332 3333221111111122445555555
Q ss_pred -CCEEEEecCCCCCCccHHHHHHHHHhCCC--cEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCch-hHHH
Q 023387 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLGI--QVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSF-YEKI 154 (283)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~l~~~~~--~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~-~~~l 154 (283)
++|++|++|||++|+++.++++.+.+.++ +++|+|||||++++ |++|+||++....++. +....|... ...+
T Consensus 72 g~~Vv~l~~GDP~i~~~~~~~~~~l~~~~~~~~veviPGiSs~~aa~a~~g~pl~~~~~~~s~---~~~~~p~~~~~~~l 148 (246)
T PRK05765 72 GNIVALVSSGDPQVYGMAGLVFELISRRKLDVDVEVIPGVTAALAAAARLGSPLSLDFVVISL---SDLLIPREEILHRV 148 (246)
T ss_pred CCcEEEEeCCCchhhhhHHHHHHHHHhcCCCCCEEEeCCHHHHHHHHHHhCCCCcCCcEEEEc---CCCCCChHHHHHHH
Confidence 89999999999999999999999988766 79999999999976 8899999743233222 111222110 0011
Q ss_pred HhhhccCccceEeeecccccchhhhhhcCccccCCcccccH-HHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEE
Q 023387 155 KRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTV-NIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMI 233 (283)
Q Consensus 155 ~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i 233 (283)
. .......++++ +|.. ....+.+.+.++ .++++++++++++++|+++|++
T Consensus 149 ~-~~~~~~~~ivl------------------------y~~~~~~~~~~~~~~l~----~~~~~~~pv~vv~~~t~~~E~i 199 (246)
T PRK05765 149 T-KAAEADFVIVF------------------------YNPINENLLIEVMDIVS----KHRKPNTPVGLVKSAYRNNENV 199 (246)
T ss_pred H-HHhcCCeEEEE------------------------EcccchhHHHHHHHHHH----hcCCCCCEEEEEEeCCCCCeEE
Confidence 1 11111222222 2221 122333334333 2578899999999999999999
Q ss_pred EEEehhchhhhhcCCCceEEEEeCCC
Q 023387 234 VAGTMRLLQMVDFGAPLHCLVIVGET 259 (283)
Q Consensus 234 ~~~tl~el~~~~~~~~~~sliI~~~~ 259 (283)
+++|++++.+........+++|+|..
T Consensus 200 ~~~tL~~l~~~~~~~~~~~~iiVg~~ 225 (246)
T PRK05765 200 VITTLSSWKEHMDEIGMTTTMIIGNS 225 (246)
T ss_pred EEEEHHHhhhhhhcCCCceEEEECCc
Confidence 99999998643222456789999853
No 24
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=100.00 E-value=6.3e-33 Score=233.69 Aligned_cols=216 Identities=22% Similarity=0.284 Sum_probs=157.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccc-cchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIAL-ADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~~i~~~~~~ 79 (283)
|||+||+|||+++++|++|+++|++||+|+ +|+.++ +.++...+|+++. ..++..+ .+++.++.+++
T Consensus 4 ~L~VVGiGPG~~~~mT~~A~~al~~ad~iv--GY~~Y~---------d~i~l~~~k~v~~s~m~~Ei~-Ra~~AielA~~ 71 (249)
T COG1010 4 KLYVVGIGPGDPELMTPEARRALEEADVIV--GYTTYL---------DLIELRPGKEVIRSGMREEIE-RAKEAIELAAE 71 (249)
T ss_pred eEEEEEeCCCChhhCCHHHHHHHHhCCEEE--ecHHHH---------HHHhcCCCCEEEeCCcHhHHH-HHHHHHHHHhc
Confidence 699999999999999999999999999999 776665 1144223555543 2233333 45677777777
Q ss_pred -CCEEEEecCCCCCCccHHHHHHHHHhC---CCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHH
Q 023387 80 -SNVAFLVVGDPFGATTHTDLVVRAKKL---GIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKI 154 (283)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~l~~~---~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l 154 (283)
++|+++++|||++|+.....++.+.+. +++|+|+||||+++++ |++|.||.+++..+|+ |+.+.| |+.|
T Consensus 72 G~~ValVSsGDpgVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISL---SDlLtP---we~I 145 (249)
T COG1010 72 GRDVALVSSGDPGVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISL---SDLLTP---WEVI 145 (249)
T ss_pred CCeEEEEeCCCccHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEh---HhcCCc---HHHH
Confidence 889999999999999999989888765 4899999999999987 7799999987555554 567777 5655
Q ss_pred Hhh----hccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCC
Q 023387 155 KRN----RSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSED 230 (283)
Q Consensus 155 ~~~----~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~ 230 (283)
+++ ...++ . ..+|+|..-- ..+.+.+-.|++.+ +.++++||.++.|+|.++
T Consensus 146 ekRl~aAA~adf-V-------------------i~~YNP~s~~-R~~~~~~a~eil~~----~r~~~tpVgivrnagR~~ 200 (249)
T COG1010 146 EKRLRAAAEADF-V-------------------IALYNPISKR-RPEQLGRAFEILRE----HRSPDTPVGIVRNAGREG 200 (249)
T ss_pred HHHHHHHhhCCE-E-------------------EEEECCcccc-chHHHHHHHHHHHH----hcCCCCcEEEEecCCCCC
Confidence 543 22332 1 2234433211 11223334444443 446799999999999999
Q ss_pred eEEEEEehhchhhhhcCCCceEEEEeCCCC
Q 023387 231 QMIVAGTMRLLQMVDFGAPLHCLVIVGETH 260 (283)
Q Consensus 231 E~i~~~tl~el~~~~~~~~~~sliI~~~~~ 260 (283)
|++...||+|+.+.+ ..++.|++|+|+.+
T Consensus 201 e~v~ittL~~l~~~~-~iDM~T~vIIGns~ 229 (249)
T COG1010 201 EEVRITTLGDLDEAE-EIDMRTIVIIGNSE 229 (249)
T ss_pred ceEEEEEhHHhcccc-cccceEEEEEcCCc
Confidence 999999999998522 26889999999643
No 25
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase. This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis.
Probab=100.00 E-value=2e-32 Score=239.96 Aligned_cols=216 Identities=20% Similarity=0.242 Sum_probs=139.5
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCCccccchhhHHHHHHHHHHhccC-
Q 023387 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE- 79 (283)
Q Consensus 2 l~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~i~~~~~~- 79 (283)
||+||+|||||++||++|+++|++||+|+++.. .+++++.+. ++++...+.....+..+.+.+.+++
T Consensus 1 l~iVG~GpG~~~~lT~~A~~~i~~AdvV~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 69 (239)
T TIGR01466 1 LYVVGIGPGAEELMTPEAKEALAEADVIVGYKT-----------YLDLIEDLIPGKEVVTSGMREEIARAELAIELAAEG 69 (239)
T ss_pred CEEEEeCCCChHHHHHHHHHHHHhCCEEEECcc-----------HHHHHHhhCCCCEEEeCCChHHHHHHHHHHHHHhCC
Confidence 689999999999999999999999999997652 223355443 2322211111111233444544445
Q ss_pred CCEEEEecCCCCCCccHHHHHHHHHhCC--CcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHHh
Q 023387 80 SNVAFLVVGDPFGATTHTDLVVRAKKLG--IQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKR 156 (283)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~l~~~~--~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~ 156 (283)
++|++|++|||++||++.++.+.+++.+ ++++++|||||+|++ |++|+||++....++. +.+.++ ++.+..
T Consensus 70 ~~Vv~l~~GDP~~~~~~~~l~~~l~~~~~~~~v~viPGiSS~~aa~a~~g~p~~~~~~~is~---~~~~~~---~~~~~~ 143 (239)
T TIGR01466 70 RTVALVSSGDPGIYGMAALVFEALEKKGAEVDIEVIPGITAASAAASLLGAPLGHDFCVISL---SDLLTP---WPEIEK 143 (239)
T ss_pred CCEEEEecCCCcccccHHHHHHHHHhcCCCCCEEEeCCccHHHHHHHHcCCCcccccEEEEC---CCCCCC---chHHHH
Confidence 8999999999999999999999997754 599999999999976 8899999654222221 221223 222221
Q ss_pred hhc---cCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEE
Q 023387 157 NRS---LGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMI 233 (283)
Q Consensus 157 ~~~---~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i 233 (283)
+.. .+..++++++...+ ...+.+ ..+.+.+.+. ++.++++++++|+|+|+|++
T Consensus 144 ~l~~~~~~~~~~vl~~~~~~----------------~~~~~~----~~i~~~L~~~----~~~~~~v~v~~~l~~~~E~i 199 (239)
T TIGR01466 144 RLRAAAEADFVIAIYNPRSK----------------RRPEQF----RRAMEILLEH----RKPDTPVGIVRNAGREGEEV 199 (239)
T ss_pred HHHHHhCCCcEEEEECCccc----------------chhhhH----HHHHHHHHhc----CCCCCEEEEEEECCCCCeEE
Confidence 111 11112333221100 001123 3333434332 34589999999999999999
Q ss_pred EEEehhchhhhhcCCCceEEEEeCCCC
Q 023387 234 VAGTMRLLQMVDFGAPLHCLVIVGETH 260 (283)
Q Consensus 234 ~~~tl~el~~~~~~~~~~sliI~~~~~ 260 (283)
+.++++++.+.+ .++++++++++..
T Consensus 200 ~~~~l~~l~~~~--~~~~s~iii~~~~ 224 (239)
T TIGR01466 200 EITTLAELDEEL--IDMLTTVIIGNSE 224 (239)
T ss_pred EEEEHHHHhhcC--CCCCeEEEECCch
Confidence 999999997655 4678888888644
No 26
>PRK05991 precorrin-3B C17-methyltransferase; Provisional
Probab=100.00 E-value=2.3e-32 Score=240.97 Aligned_cols=216 Identities=19% Similarity=0.192 Sum_probs=140.1
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCC-CccccchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGK-PIALADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k-~~~~~~~~~~~~~~~~i~~~~~~ 79 (283)
|||+||+|||||++||++|+++|++||+|+++. +++ +.+....+. .....+++..++..+.+....++
T Consensus 4 ~l~iVG~GpG~p~~lT~~a~~~l~~AdvV~~~~--~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 72 (250)
T PRK05991 4 RLFVIGTGPGNPEQMTPEALAAVEAATDFFGYG--PYL---------DRLPLRADQLRHASDNREELDRAGAALAMAAAG 72 (250)
T ss_pred eEEEEEeCCCChhhhhHHHHHHHHhCCEEEEcH--HHH---------HhhhccccccccCCCCHHHHHHHHHHHHHHHCC
Confidence 599999999999999999999999999999653 222 111111111 11122232333333333333455
Q ss_pred CCEEEEecCCCCCCccHHHHHHHHHh-----CCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHH
Q 023387 80 SNVAFLVVGDPFGATTHTDLVVRAKK-----LGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEK 153 (283)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~l~~-----~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~ 153 (283)
++||+|++|||++|+++.++.+.+.+ .+++++++|||||+|++ |++|+||++....+++ |.... .++.
T Consensus 73 ~~Vv~l~~GDP~~~~~~~~l~~~~~~g~~~~~~~~v~vvPGISS~~aa~a~~g~p~~~~~~~~s~-----~~~~~-~~~~ 146 (250)
T PRK05991 73 ANVCVVSGGDPGVFAMAAAVCEAIENGPAAWRAVDLTIVPGVTAMLAVAARIGAPLGHDFCAISL-----SDNLK-PWEL 146 (250)
T ss_pred CeEEEEeCCCchhhhhHHHHHHHHHhcccccCCceEEEECChHHHHHHHHHhCCCCCCCCEEeec-----ccCCC-CHHH
Confidence 89999999999999999999998874 35899999999999976 8899999754222222 22111 1222
Q ss_pred HHhh----hccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCC
Q 023387 154 IKRN----RSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSE 229 (283)
Q Consensus 154 l~~~----~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~ 229 (283)
+..+ ...+.+.+ +++...+ ...++..+..+.|.+ +++++.++++++|+|++
T Consensus 147 l~~~l~~~~~~~~~~v-l~~~~~~----------------~~p~~l~~~~~~L~~--------~~~~~~~v~v~~~lg~~ 201 (250)
T PRK05991 147 IEKRLRLAAEAGFVIA-LYNPISR----------------ARPWQLGEAFDLLRE--------HLPATVPVIFGRAAGRP 201 (250)
T ss_pred HHHHHHhhcCCCeEEE-EECCccc----------------cchhhHHHHHHHHHh--------cCCCCCEEEEEEeCCCC
Confidence 3222 22233333 3321100 011233333344433 34568899999999999
Q ss_pred CeEEEEEehhchhhhhcCCCceEEEEeCCCC
Q 023387 230 DQMIVAGTMRLLQMVDFGAPLHCLVIVGETH 260 (283)
Q Consensus 230 ~E~i~~~tl~el~~~~~~~~~~sliI~~~~~ 260 (283)
+|+|+.++++++...+ .++++++|+|...
T Consensus 202 dE~i~~~~l~el~~~~--~~~~s~vivg~~~ 230 (250)
T PRK05991 202 DERIAVAPLAEADASM--ADMATCVIIGSAE 230 (250)
T ss_pred CcEEEEEEHHHhhhhc--cCCCeEEEECCCc
Confidence 9999999999998655 4688999998543
No 27
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=9.6e-33 Score=261.81 Aligned_cols=232 Identities=19% Similarity=0.169 Sum_probs=156.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHH-----HhCCCccccchhhHHHHHHHHHH
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEK-----LYGKPIALADREMVEEKADKILS 75 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~-----~~~k~~~~~~~~~~~~~~~~i~~ 75 (283)
+||+||+|||||++||+||+++|++||+|+|+... +...++...+ +.++.... .....+++.+.+.+
T Consensus 4 ~V~lVGaGPGdp~LLTlrA~~~L~~ADVVvydrlv-------~~~~l~~~~~~~~~i~~gk~~~~-~~~~qe~i~~~l~~ 75 (474)
T PRK07168 4 YVYLVGAGPGDEGLITKKAIECLKRADIVLYDRLL-------NPFFLSYTKQTCELMYCGKMPKN-HIMRQEMINAHLLQ 75 (474)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhCCEEEEeCcC-------CHHHHhhcCCCcEEEeccCcCCC-ccccHHHHHHHHHH
Confidence 38999999999999999999999999999986532 1111000110 01111100 00112334345566
Q ss_pred hccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHH
Q 023387 76 ESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEK 153 (283)
Q Consensus 76 ~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~ 153 (283)
.+++ ++|++|++|||++||++.++++.+.+.|+++||||||||++++ |++|+||++.+.+.++.+.+.|.++.. .+.
T Consensus 76 ~a~~Gk~VvrL~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~viT~h~~~~~-~~~ 154 (474)
T PRK07168 76 FAKEGKIVVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAKGPL-TDH 154 (474)
T ss_pred HHhCCCEEEEEeCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEEEccCcCCcc-ccc
Confidence 6555 8999999999999999999999999999999999999999986 889999999888777777777754310 000
Q ss_pred HHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEE
Q 023387 154 IKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMI 233 (283)
Q Consensus 154 l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i 233 (283)
.+|+.+.+. ++.++++..+....+.+.+.+.| +++++|+++++++|+++|++
T Consensus 155 ---------------------~~~~~l~~~----~tlV~lm~~~~l~~I~~~L~~~G---~~~~tpvavv~~~t~~~Qri 206 (474)
T PRK07168 155 ---------------------GKYNSSHNS----DTIAYYMGIKNLPTICENLRQAG---KKEDTPVAVIEWGTTGKQRV 206 (474)
T ss_pred ---------------------hhHHHhcCC----CeEEEEcChhhHHHHHHHHHHcC---cCCCCeEEEEEECCCCCcEE
Confidence 011222211 12233333344456666666554 57799999999999999999
Q ss_pred EEEehhchhhh--hcCCCceEEEEeCCCChhHHHHHhhc
Q 023387 234 VAGTMRLLQMV--DFGAPLHCLVIVGETHPVEEEMLDFY 270 (283)
Q Consensus 234 ~~~tl~el~~~--~~~~~~~sliI~~~~~~~~~~~~~~~ 270 (283)
+.+|++++.+. +......+++++|..-.. ++.+.|+
T Consensus 207 ~~~tL~~l~~~~~~~~~~~pavivvG~vv~~-~~~~~~~ 244 (474)
T PRK07168 207 VTGTLSTIVSIVKNENISNPSMTIVGDVVSL-RNQIAWK 244 (474)
T ss_pred EEEEHHHHHHHHHhcCCCCCEEEEEChHhcc-ccccchh
Confidence 99999999642 222445799999953332 3344444
No 28
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=100.00 E-value=7.1e-32 Score=231.02 Aligned_cols=201 Identities=21% Similarity=0.185 Sum_probs=134.4
Q ss_pred EEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCC-CccccchhhHHHHHHHHHHhccCCCE
Q 023387 4 IIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGK-PIALADREMVEEKADKILSESQESNV 82 (283)
Q Consensus 4 iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k-~~~~~~~~~~~~~~~~i~~~~~~~~V 82 (283)
+||+|||||++||+||+++|++||+|+++.. .++.+..+.++ .........+++..+.+.+.+++++|
T Consensus 1 iVG~GpG~~~~lT~~a~~~L~~advv~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~v 69 (204)
T TIGR02467 1 VVGIGPGGPELLTPAAIEAIRKADLVVGGER-----------HLELLAELIGEKREIILTYKDLDELLEFIAATRKEKRV 69 (204)
T ss_pred CEEeCCCChhhcCHHHHHHHHhCCEEEechh-----------hHHHHhhhcCCceEeccCcCCHHHHHHHHHHhcCCCCE
Confidence 6999999999999999999999999997642 11224443322 11111123466677777766557899
Q ss_pred EEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHHhhhccC
Q 023387 83 AFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRSLG 161 (283)
Q Consensus 83 ~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~ 161 (283)
++|++|||++|+++.++.+.+.+ .+++++|||||+|++ |++|+||++. ..+ +.|.++.... .......+
T Consensus 70 v~l~~GDP~~~~~~~~l~~~~~~--~~v~iiPGiSs~~~a~a~~g~~l~~~---~~i---s~~~~~~~~~--~~~~l~~~ 139 (204)
T TIGR02467 70 VVLASGDPLFYGIGRTLAERLGK--ERLEIIPGISSVQYAFARLGLPWQDA---VVI---SLHGRELDEL--LLALLRGH 139 (204)
T ss_pred EEEecCCCcccccHHHHHHhCCC--CcEEEeCChHHHHHHHHHcCCChhhC---eEE---EeeCCCCcHH--HHHHHhcC
Confidence 99999999999999999888754 479999999999976 8899999753 222 2244432110 11111122
Q ss_pred ccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEEehhch
Q 023387 162 LHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAGTMRLL 241 (283)
Q Consensus 162 ~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~tl~el 241 (283)
..++++.+. ...+.++++.|.+ .| +++.+++++++++|+++|+++.++++|+
T Consensus 140 ~~~vvl~~~---------------------~~~~~~i~~~L~~----~g---~~~~~~v~v~~~l~~~~E~i~~~tl~el 191 (204)
T TIGR02467 140 RKVAVLTDP---------------------RNGPAEIARELIE----LG---IGGSYELTVGENLGYEDERITEGTLEEI 191 (204)
T ss_pred CcEEEEeCC---------------------CCCHHHHHHHHHH----CC---CCCCeEEEEEcccCCCCeEEEeCCHHHH
Confidence 222222111 0134455554443 54 4556699999999999999999999999
Q ss_pred hhhhcCCCceEE
Q 023387 242 QMVDFGAPLHCL 253 (283)
Q Consensus 242 ~~~~~~~~~~sl 253 (283)
.+..|..+++++
T Consensus 192 ~~~~~~~~~~~~ 203 (204)
T TIGR02467 192 AAAQFDFSPLLV 203 (204)
T ss_pred hhcccCCcccee
Confidence 876444455554
No 29
>PRK08284 precorrin 6A synthase; Provisional
Probab=99.98 E-value=1e-31 Score=235.91 Aligned_cols=195 Identities=20% Similarity=0.254 Sum_probs=131.3
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhC---CCcc---c--cc---------hh
Q 023387 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG---KPIA---L--AD---------RE 64 (283)
Q Consensus 2 l~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~---k~~~---~--~~---------~~ 64 (283)
||+||+||||||+||+||+++|++||+|++|+....- .++..-..++++.+.. .+++ + .+ ..
T Consensus 4 ly~VGvGPGDPeLLTlkA~r~L~~advV~~p~~~~~~-~~la~~a~~iv~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~ 82 (253)
T PRK08284 4 LLLIGIGAGDPDHLTLQAIKALNRADVFFVPDKGADK-DDLVALRREICARHITGPGYRVVEFDDPVRDRAPDDYRAAVD 82 (253)
T ss_pred EEEEEecCCChhHhhHHHHHHHHhCCEEEEECCCCCc-hhHHHHHHHHHHHHhcCCCceEEecCCCCcccchhhhhhhhh
Confidence 8999999999999999999999999999998752110 0000001233444421 1111 1 11 11
Q ss_pred hHHHH-----HHHHHHhccC-CCEEEEecCCCCCCccHHHHHHHHHh---CCCcEEEEcCCchHhHH-HHcCCccccCCc
Q 023387 65 MVEEK-----ADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKK---LGIQVKAVHNASVMNAV-GICGLQLYRFGE 134 (283)
Q Consensus 65 ~~~~~-----~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~---~~~~veiiPGISS~~a~-a~~g~pl~~~~~ 134 (283)
.|.+. ++.|.+.+++ ++|++|++|||++||++.++++.+.+ .|+++||||||||++++ |++|+||+..++
T Consensus 83 ~~~~~~~~~~~~~i~~~l~~g~~Vv~l~~GDP~~ys~~~~l~~~l~~~~~~~i~vevVPGISS~~aaaA~lg~pl~~~~~ 162 (253)
T PRK08284 83 DWHAARAALYERLIAEELPDGGTGAFLVWGDPSLYDSTLRILERVRARGRVAFDYEVIPGITSVQALAARHRIPLNRIGE 162 (253)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCcchhhHHHHHHHHHHhhccCCCcEEEECChhHHHHHHHHcCCChhcCCc
Confidence 22222 4556666666 89999999999999999999999976 38999999999999986 889999999888
Q ss_pred eeEEecccCCCCCCchhHHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHH-HHHHHHHHHHHcCCCC
Q 023387 135 TVSIPFFTETWRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNI-AIEQLLEVELLQGESV 213 (283)
Q Consensus 135 ~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L~e~~~~~g~~~ 213 (283)
++.+++.+. .+. .......+++ +|+.+. ..+.|.
T Consensus 163 ~l~ii~g~~-------l~~---~l~~~~~~vv-------------------------v~k~~~~~~~~L~---------- 197 (253)
T PRK08284 163 PVHITTGRR-------LAE---GWPAGVDNVV-------------------------VMLDGECSFRRLD---------- 197 (253)
T ss_pred eEEEEecCc-------hHH---HHHhcCCcEE-------------------------EEECCcCCHHHHc----------
Confidence 888864321 111 1000111222 222222 222221
Q ss_pred CCCCceEEEEeccCCCCeEEEEEehhchhh
Q 023387 214 YNEDTLCVGFARLGSEDQMIVAGTMRLLQM 243 (283)
Q Consensus 214 ~~~~~~v~v~e~lg~~~E~i~~~tl~el~~ 243 (283)
.++.++++++|+|+|+|+|+.++++++.+
T Consensus 198 -~~~~~v~v~e~l~~p~E~I~~~~l~ei~~ 226 (253)
T PRK08284 198 -DPDLEIWWGAYLGTPDEILIAGPLAEVAE 226 (253)
T ss_pred -CCCCEEEEEecCCCCCeEEEEccHHHHHH
Confidence 12569999999999999999999999865
No 30
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=99.97 E-value=3.4e-31 Score=232.04 Aligned_cols=196 Identities=20% Similarity=0.211 Sum_probs=130.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhC---CCcc---c--c-c--------h
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG---KPIA---L--A-D--------R 63 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~---k~~~---~--~-~--------~ 63 (283)
.||+||+||||||+||+||+++|++||+|++|....-- .....-+.++++.+.. +++. + . + .
T Consensus 2 ~l~~VG~GPGDPeLLTlkA~r~L~~AdvV~~p~~~~~~-~~l~~~a~~i~~~~~~~~~~~i~~~~~pm~~~~~~~y~~~~ 80 (249)
T TIGR02434 2 TILLIGIGAGDPEQLTLQAVDALNHADVFFVLDKGEQK-SDLVALRREICARYVTAPGYRIVEVDDPERDAGADDYRAAV 80 (249)
T ss_pred EEEEEEeCCCChHHhHHHHHHHHHhCCEEEEECCCCCc-hhHHHHHHHHHHHHhCCCCcEEEEecCCCcCCccchhhhhH
Confidence 48999999999999999999999999999998532100 0000001233443321 1111 0 0 0 0
Q ss_pred hhHH-----HHHHHHHHhccC-CCEEEEecCCCCCCccHHHHHHHHHh---CCCcEEEEcCCchHhHH-HHcCCccccCC
Q 023387 64 EMVE-----EKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKK---LGIQVKAVHNASVMNAV-GICGLQLYRFG 133 (283)
Q Consensus 64 ~~~~-----~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~---~~~~veiiPGISS~~a~-a~~g~pl~~~~ 133 (283)
..|. ++++.|.+.+++ ++||+|++|||++||++.++.+.+.+ .+++++|||||||++++ |++|+||++.+
T Consensus 81 ~~~~~~~~~~~a~~i~~~~~~g~~Vv~L~~GDP~~yst~~~l~~~l~~~~~~~~~vevVPGISS~~aaaA~lg~pl~~~~ 160 (249)
T TIGR02434 81 DDWHAQRADIWAQAIAEELGDDGTGAFLVWGDPSLYDSTLRILERLRALGGVPFDYEVIPGITSVQALTARHRIPLNRIG 160 (249)
T ss_pred HHhhhhHHHHHHHHHHHHHhCCCcEEEEeCCCchHhhhHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHhCCCcccCC
Confidence 1122 356677776666 89999999999999999999999876 46899999999999976 88999999988
Q ss_pred ceeEEecccCCCCCCchhHHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHH-HHHHHHHHHHcCCC
Q 023387 134 ETVSIPFFTETWRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIA-IEQLLEVELLQGES 212 (283)
Q Consensus 134 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~L~e~~~~~g~~ 212 (283)
+.+.+++.. . .+.. ....+ .+ .++|+.+.. .+.+.+
T Consensus 161 ~~l~v~~g~----~---l~~~--~l~~~-~~-------------------------~vilk~~~~~~~~l~~-------- 197 (249)
T TIGR02434 161 EPVQITTGR----R---LAEG--GFPEG-DT-------------------------VVVMLDGEQAFQRVDP-------- 197 (249)
T ss_pred ceEEEEecc----c---hhhc--cccCC-Ce-------------------------EEEEECCccCHHHhcC--------
Confidence 777776322 1 1100 01111 11 223333222 222211
Q ss_pred CCCCCceEEEEeccCCCCeEEEEEehhchhh
Q 023387 213 VYNEDTLCVGFARLGSEDQMIVAGTMRLLQM 243 (283)
Q Consensus 213 ~~~~~~~v~v~e~lg~~~E~i~~~tl~el~~ 243 (283)
.+.++++++|+|+|+|+|+.+++.++.+
T Consensus 198 ---~~~~~~v~e~lg~pdE~I~~~~l~~l~~ 225 (249)
T TIGR02434 198 ---EDIDIYWGAYLGTPDEILISGPLAEVGP 225 (249)
T ss_pred ---CCCEEEEEEeCCCCCeEEEEccHHHHHH
Confidence 2569999999999999999998988865
No 31
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=99.97 E-value=2.9e-30 Score=230.22 Aligned_cols=213 Identities=21% Similarity=0.239 Sum_probs=152.6
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHH-hCCCccccchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKL-YGKPIALADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~-~~k~~~~~~~~~~~~~~~~i~~~~~~ 79 (283)
+||+||+||||+++||+||+++|++||+|+|+++.. .... ++.+ .++++.....+++++.++.|.+.+++
T Consensus 13 ~Ly~VgtgiGn~edITlRAl~~L~~aDvI~~edtr~------t~~l---l~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~ 83 (287)
T PRK14994 13 QLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRH------TGLL---LQHFAINARLFALHDHNEQQKAETLLAKLQE 83 (287)
T ss_pred eEEEEeCCCCChHHhhHHHHHHHHhCCEEEEeCCcc------hHHH---HhhcCCCCEEEEccCCCHHHHHHHHHHHHHC
Confidence 599999999999999999999999999999987531 1111 2222 13343333344677778888888766
Q ss_pred -CCEEEEe-cCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHHh
Q 023387 80 -SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKR 156 (283)
Q Consensus 80 -~~V~~l~-~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~ 156 (283)
++||+++ .|||++|+++.++++.+.+.|++|++|||+||+++| |++|+|.+.+ . +.++.|...-++..
T Consensus 84 G~~ValvSdaGdP~I~dpg~~Lv~~~~~~gi~v~vIPGiSA~~aA~a~sG~~~~~f----~----f~Gflp~~~~~r~~- 154 (287)
T PRK14994 84 GQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRF----C----YEGFLPAKSKGRRD- 154 (287)
T ss_pred CCeEEEEccCCCCceeCCHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHcCCCCCcc----e----EeEECCCCCchHHH-
Confidence 8999998 999999999999999999999999999999999976 8899994332 1 22333321110000
Q ss_pred hhccCccceEeeecccccchhhhhhcCccccCCccccc-HHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEE
Q 023387 157 NRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMT-VNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVA 235 (283)
Q Consensus 157 ~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~ 235 (283)
.++.+.+ ..+|.++|. ++++.+.|.++++..| ++.++++++++|+.+|++++
T Consensus 155 -------------------~L~~l~~---~~~t~V~yesp~R~~~~l~~l~~~~g-----~~~~v~i~relTk~~E~~~~ 207 (287)
T PRK14994 155 -------------------ALKALEA---EPRTLIFYESTHRLLDSLEDIVAVLG-----ESRYVVLARELTKTWETIHG 207 (287)
T ss_pred -------------------HHHHHhc---CCCeEEEEEEChhHHHHHHHHHHhcC-----CCCeEEEEeeccCCCCcEEe
Confidence 0111111 123344555 6888887777776443 47899999999999999999
Q ss_pred Eehhchhhhh----c-CCCceEEEEeCC
Q 023387 236 GTMRLLQMVD----F-GAPLHCLVIVGE 258 (283)
Q Consensus 236 ~tl~el~~~~----~-~~~~~sliI~~~ 258 (283)
|+++++.+.- . ....++++|-++
T Consensus 208 g~~~~i~~~~~~~~~~~kGE~vivi~~~ 235 (287)
T PRK14994 208 APVGELLAWVKEDENRRKGEMVLIVEGH 235 (287)
T ss_pred eEHHHHHHHHHhcCCCCCceEEEEEeCC
Confidence 9999986521 1 146788888763
No 32
>KOG1527 consensus Uroporphyrin III methyltransferase [Coenzyme transport and metabolism]
Probab=99.94 E-value=8.4e-27 Score=205.78 Aligned_cols=220 Identities=18% Similarity=0.196 Sum_probs=157.6
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHH----HhCCCccccchhhHHHHHHHHHHhc
Q 023387 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEK----LYGKPIALADREMVEEKADKILSES 77 (283)
Q Consensus 2 l~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~----~~~k~~~~~~~~~~~~~~~~i~~~~ 77 (283)
||+||.|||+|++||++|+++|++||+++++...+ ...|+++.+ |+.+++.-......++.-+..++.+
T Consensus 258 i~LvGsGPGsp~lLT~~A~~~I~sAD~~LaDkLVp-------~avL~Lipp~t~lfia~KfpGna~raQ~Elh~~~l~~l 330 (506)
T KOG1527|consen 258 IYLVGSGPGSPELLTLKAVRVIQSADLLLADKLVP-------NAVLELIPPDTRLFIAGKFPGNASRAQEELHELLLNFL 330 (506)
T ss_pred EEEEccCCCChhheeHHHHHHHhhcceehhhhccc-------HHHHhhcCCCCceEEeecCCCchhHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999876432 222222322 2223332111223455556666666
Q ss_pred cC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHH
Q 023387 78 QE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIK 155 (283)
Q Consensus 78 ~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~ 155 (283)
.+ -.|+.|+.|||.+||++.+.+..++++|+...|||||||..++ +.+|+|+++.|..-++.+.+.+++..... .+
T Consensus 331 ~~G~~VVRLKqGDPyifGRGGEE~~Ff~qhGy~p~ViPGIssal~~~~~agIP~ThRgvAdqvl~cTGtgrKG~~p-~i- 408 (506)
T KOG1527|consen 331 EAGATVVRLKQGDPYIFGRGGEEMDFFQQHGYRPQVIPGISSALGIAAEAGIPLTHRGVADQVLFCTGTGRKGGTP-AI- 408 (506)
T ss_pred hCCCEEEEecCCCceeecCCchhhhhHHhCCceeEeccchhhhhhhhHhcCCCcccccccceEEEEeccCCCCCCC-Cc-
Confidence 55 6899999999999999999999999999999999999999987 66999999999888887778777643210 00
Q ss_pred hhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEE
Q 023387 156 RNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVA 235 (283)
Q Consensus 156 ~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~ 235 (283)
... ...-.++.+|...+ +..|..-+-+. |+|.++|++++||.+.||||.+.
T Consensus 409 ------------p~f-------------vp~~TtVflMaLhr-l~~L~q~L~~h---Gwp~d~Pa~ivERgscPdQR~vf 459 (506)
T KOG1527|consen 409 ------------PAF-------------VPDTTTVFLMALHR-LPSLAQKLMDH---GWPSDTPAVIVERGSCPDQRTVF 459 (506)
T ss_pred ------------ccc-------------CCCceeEeeehhcc-hHHHHHHHHhc---CCCCCCCeeeEeccCCchHHHHH
Confidence 000 00012244565543 34454444445 47889999999999999999999
Q ss_pred Eehhchhhh--hcCCCceEEEEeCCC
Q 023387 236 GTMRLLQMV--DFGAPLHCLVIVGET 259 (283)
Q Consensus 236 ~tl~el~~~--~~~~~~~sliI~~~~ 259 (283)
.+++++.+. +.+.....++|+|+.
T Consensus 460 ~~Lkdv~ee~~~~gs~pPglliiGk~ 485 (506)
T KOG1527|consen 460 AELKDVAEEIQSAGSVPPGLLIIGKV 485 (506)
T ss_pred HHHHHHHHHHHhccCCCCcEEEEeee
Confidence 888887653 344556688888853
No 33
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=99.89 E-value=9.5e-22 Score=170.89 Aligned_cols=212 Identities=25% Similarity=0.292 Sum_probs=154.1
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCCccccchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~i~~~~~~ 79 (283)
+||+|++..||.+.||+||+++|++||+|+|++.... ...+..|. .++++..+.++.++....+++.+++
T Consensus 6 ~LYlV~TPIGNl~Dit~Ral~~L~~~D~iaaEDTR~t---------~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~ 76 (275)
T COG0313 6 TLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTRVT---------RKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKK 76 (275)
T ss_pred eEEEeCCCCCChHhcCHHHHHHHhhCCEEEEeccHHH---------HHHHHHhCCCCceecccCCcHHHHHHHHHHHHhc
Confidence 4999999999999999999999999999999875311 01144442 3334444445555666778888877
Q ss_pred -CCEEEEe-cCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHHh
Q 023387 80 -SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKR 156 (283)
Q Consensus 80 -~~V~~l~-~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~ 156 (283)
++|++++ .|-|+++++|..|++.+.+.|++|+++||+||+.+| +.+|+|-+.| .+.+|.|.+.-++..
T Consensus 77 g~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~~~F--------~F~GFLP~k~~~R~~- 147 (275)
T COG0313 77 GKSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASGLPSQRF--------LFEGFLPRKSKERRK- 147 (275)
T ss_pred CCeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCCCCe--------eEeccCCCCccHHHH-
Confidence 6999999 999999999999999999999999999999999855 8999997754 345777754333221
Q ss_pred hhccCccceEeeecccccchhhhhhc-CccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEE
Q 023387 157 NRSLGLHTLCLLDIRVKEPSLESLCR-GKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVA 235 (283)
Q Consensus 157 ~~~~~~~~~~l~d~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~ 235 (283)
.++.+++ ...+ ..|-+|.++.+-|.++.+- ++.+.+++++..|+...|.+++
T Consensus 148 -------------------~l~~l~~~~~t~---IfyEsphRl~~tL~d~~~~-----~g~~r~v~vaRELTK~~Ee~~~ 200 (275)
T COG0313 148 -------------------RLEALANEPRTL---IFYESPHRLLATLEDIVEV-----LGSDREVVVARELTKLFEEIYR 200 (275)
T ss_pred -------------------HHHHHHhcCCeE---EEEecchhHHHHHHHHHHH-----cCCCceEEEEeecccchhheec
Confidence 1122222 1110 1244566776666665543 4458999999999999999999
Q ss_pred Eehhchhhh--hc-CCCceEEEEeC
Q 023387 236 GTMRLLQMV--DF-GAPLHCLVIVG 257 (283)
Q Consensus 236 ~tl~el~~~--~~-~~~~~sliI~~ 257 (283)
|++.++.+. +. ....++++|-+
T Consensus 201 g~~~e~~~~~~~~~~KGE~vlvv~~ 225 (275)
T COG0313 201 GTLSELIEWLEEDTLKGEFVLVVEG 225 (275)
T ss_pred ccHHHHHHHhhhcCCcccEEEEEeC
Confidence 999997543 11 34667888777
No 34
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=99.87 E-value=1.3e-20 Score=166.87 Aligned_cols=210 Identities=21% Similarity=0.182 Sum_probs=143.9
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCCccccchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~i~~~~~~ 79 (283)
|+|+|++..||.+.||+||+++|++||+|+|+++.... .++..+. .++....+.++..+....+++..++
T Consensus 1 mLyvv~TPIGNl~Dit~Ral~~L~~~d~i~~EDTR~t~---------kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~ 71 (276)
T TIGR00096 1 LLYVVTTPIGNLEDITRRALELLACVDLFAEEDTRTSK---------LLLHLGIIATPKAFHIDNEFQEKQNLLAAKLEI 71 (276)
T ss_pred CEEEECCCCcCHHHHhHHHHHHHHhCCEEEecCchhHH---------HHHHhcCCCCceEEEecccHhHHHHHHHHHHHc
Confidence 89999999999999999999999999999998853210 1133321 2333333444444555667766665
Q ss_pred -CCEEEEe-cCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHH-
Q 023387 80 -SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIK- 155 (283)
Q Consensus 80 -~~V~~l~-~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~- 155 (283)
++|++++ .|-|++.++|..+++.+.+.|++|.++||.|++.++ +.+|++-..+ +..+|.|.+.-++-+
T Consensus 72 g~~valvSDAG~P~ISDPG~~LV~~~~~~~i~v~~ipG~sA~~~Al~~SG~~~~~f--------~F~GFlp~k~~~r~~~ 143 (276)
T TIGR00096 72 GNNIAVSSDAGPPLISDPGHLLVACREKANIIVVPLPGAAALTAALCASGPATDRF--------FFGGFLPKKSKRRQAL 143 (276)
T ss_pred CCcEEEEecCCCCCcCCccHHHHHHHHHCCCeEEcCChHHHHHHHHHhcCCCCCce--------EEeeeCCCChHHHHHH
Confidence 8999999 999999999999999999999999999999999876 8899876543 345666643222111
Q ss_pred -hhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEE
Q 023387 156 -RNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIV 234 (283)
Q Consensus 156 -~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~ 234 (283)
......-+++++ |-+|.++.+-| +.+... + ++.+++++..++...|.++
T Consensus 144 l~~l~~~~~t~if------------------------yEsp~Rl~~~L-~~l~~~----~-g~r~i~~arELTK~~E~~~ 193 (276)
T TIGR00096 144 KAYIAEERTTVFF------------------------YESHHRLLTTL-TDLNVF----L-GSERFVGAAELTKKESEYW 193 (276)
T ss_pred HHHHhCCCCeEEE------------------------EECcHhHHHHH-HHHHHh----c-CCceEEEEEecCCCceEEE
Confidence 111111122221 33444443333 333321 2 3789999999999999999
Q ss_pred EEehhchhhh-h-----cCCCceEEEEeC
Q 023387 235 AGTMRLLQMV-D-----FGAPLHCLVIVG 257 (283)
Q Consensus 235 ~~tl~el~~~-~-----~~~~~~sliI~~ 257 (283)
+|++.++.+. + .....+++||.|
T Consensus 194 ~g~~~e~~~~~~~~~~~~~kGE~vlvi~g 222 (276)
T TIGR00096 194 FGTVGQLLPDITEDTNNRKGGEVILIING 222 (276)
T ss_pred eCCHHHHHHHHHhccCCCCCeEEEEEEeC
Confidence 9999998542 1 124566777766
No 35
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=99.53 E-value=7.4e-13 Score=117.45 Aligned_cols=226 Identities=20% Similarity=0.282 Sum_probs=145.1
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh--CCCccccc---------hhhHHHH
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY--GKPIALAD---------REMVEEK 69 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~--~k~~~~~~---------~~~~~~~ 69 (283)
||.+||+|||+.+.||+.-.++|+++|-+++....- .. ++.+. +..+.+.+ ...++.+
T Consensus 4 ~ItvVGLG~g~~d~L~lGi~k~lknqd~ly~RTkdH--------Pv---iE~l~~e~~~f~~fD~iYE~heqFe~VYd~I 72 (488)
T COG3956 4 TITVVGLGAGDKDQLTLGIYKLLKNQDNLYVRTKDH--------PV---IEELDEEGIKFSFFDDIYETHEQFEAVYDFI 72 (488)
T ss_pred eEEEEeeCCCchhhcchHHHHHHhccceEEEecCCC--------ch---HHHHHhhcceeeehhHHHhhhhhHHHHHHHH
Confidence 689999999999999999999999999999654321 11 22221 11221111 2346678
Q ss_pred HHHHHHhccCCCEEEEecCCCCCCccHHHHHHHH-HhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCC
Q 023387 70 ADKILSESQESNVAFLVVGDPFGATTHTDLVVRA-KKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRP 147 (283)
Q Consensus 70 ~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~l-~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~ 147 (283)
++.+.+.+++|++++.++|.|++......++-.+ .+.++.|.|+||.|.+.+. .++++...++ +.++ .+. .
T Consensus 73 ~~~LveaAkekdIvYAVPGHP~VAEktVqlL~e~~ek~ni~Vkilgg~SFiD~~fealkiDPveG---~q~v--Da~--~ 145 (488)
T COG3956 73 AADLVEAAKEKDIVYAVPGHPLVAEKTVQLLIEACEKENIKVKILGGQSFIDALFEALKIDPVEG---FQIV--DAT--D 145 (488)
T ss_pred HHHHHHhhcccceEEecCCCchhHHHHHHHHHHHHhccCceEEEeCcchhHHHHHHHhcCCcccC---ceEe--ccc--h
Confidence 8888888888999999999999998877766555 4458999999999999975 8888876654 2221 111 0
Q ss_pred CchhHHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccC
Q 023387 148 GSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLG 227 (283)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg 227 (283)
.+ .+.+.. -.|+++ +. +|+ -|..+..--.|.| -||.|+++.++..+|
T Consensus 146 l~-~~il~v----r~hivI-tQ----------------VY~---~miAs~vKltLmE--------~ypDDyev~ivtaag 192 (488)
T COG3956 146 LS-NDILDV----RLHIVI-TQ----------------VYD---QMIASDVKLTLME--------YYPDDYEVYIVTAAG 192 (488)
T ss_pred hh-HHHHhh----hhceee-hh----------------HHH---HHHHHhHHHHHHH--------hCCCCceEEEEEecc
Confidence 00 111111 123221 11 011 1223222222333 588899999999999
Q ss_pred CCCeE-EEEEehhchhhhhcCCCceEEEEeCCCC--------hhHHHHHhhccCCCCCC
Q 023387 228 SEDQM-IVAGTMRLLQMVDFGAPLHCLVIVGETH--------PVEEEMLDFYRLTDDVP 277 (283)
Q Consensus 228 ~~~E~-i~~~tl~el~~~~~~~~~~sliI~~~~~--------~~~~~~~~~~~~~~~~~ 277 (283)
..+|. +...+|-|+.....-..+.|++++...+ ..-++-++-+++.+--|
T Consensus 193 s~~ee~v~tvPLyELDr~~ainnLTsVyVP~ii~~~~ly~dF~~~~~ii~~LrgenGCP 251 (488)
T COG3956 193 SENEESVRTVPLYELDRQSAINNLTSVYVPPIINETYLYHDFYTLRNIIETLRGENGCP 251 (488)
T ss_pred CCCccceeeecceeechhhhhhhcceeeccccccchhhhhhHHHHHHHHHHhcCCCCCC
Confidence 99988 7888999998764335677888887321 22344455555555444
No 36
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=66.14 E-value=6 Score=32.70 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=32.8
Q ss_pred ecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccc
Q 023387 6 GLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIAL 60 (283)
Q Consensus 6 G~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~ 60 (283)
++=|.+++.|...-.++++++|+|+.-|....-..++-+++ +..+.++++..
T Consensus 39 ~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D~t~ea---~~~~~~~~l~~ 90 (170)
T cd00885 39 TVVGDDEDRIAEALRRASERADLVITTGGLGPTHDDLTREA---VAKAFGRPLVL 90 (170)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCChHHHH---HHHHhCCCccc
Confidence 34467888888888888899999998776432111122222 55555666654
No 37
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=61.10 E-value=33 Score=28.32 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhccCCCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCch
Q 023387 66 VEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (283)
Q Consensus 66 ~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS 118 (283)
.+++.+.+.+....-+.+.++.|+|+++.....+++.+++.|+.+.+.+.-+.
T Consensus 49 ~~~i~~~i~~~~~~~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~TNg~~ 101 (191)
T TIGR02495 49 VEFLLEFLRSRQGLIDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLDTNGSN 101 (191)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEEeCCCC
Confidence 44555555543222245677899999987777888888888888887766553
No 38
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=60.84 E-value=19 Score=32.58 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=39.8
Q ss_pred CCCCcchhhHHHHHHHhhCCEEEE-cCc--ccccccCCCcchhhhhHHHhCCCccccchhhHHHHHHHHHHhccCCCEEE
Q 023387 8 GLGDERDITLRGLEAVKKCDKVYI-EAY--TSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQESNVAF 84 (283)
Q Consensus 8 GPG~~d~lT~~A~~~L~~aDvv~~-~~~--~~~l~~~i~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~i~~~~~~~~V~~ 84 (283)
||-+ -.-|++++++|++||+|+. |+. +|+ ... +. ...|.+.+++..|+.
T Consensus 166 g~e~-a~a~peal~AI~~AD~IIlGPgsp~TSI------------~P~-----Ll----------VpgIreAL~~a~vV~ 217 (297)
T TIGR01819 166 GAEK-ASIAPKVLEAIRKEDNILIGPSNPITSI------------GPI-----LS----------LPGIREALRDKKVVA 217 (297)
T ss_pred CCCC-CCCCHHHHHHHHhCCEEEECCCccHHHh------------hhh-----cC----------chhHHHHHHcCCEEE
Confidence 4533 4678999999999997764 332 121 111 10 112222233366777
Q ss_pred Ee--cCCCCCCccHHHHHHHH
Q 023387 85 LV--VGDPFGATTHTDLVVRA 103 (283)
Q Consensus 85 l~--~GDP~~~~~~~~l~~~l 103 (283)
++ .|+--+.|+...++...
T Consensus 218 Vspiig~~~v~GpA~~~m~a~ 238 (297)
T TIGR01819 218 VSPIVGNAPVSGPAGKLMAAV 238 (297)
T ss_pred EccCcCCCcCCChHHHHHHHc
Confidence 76 67777888887776653
No 39
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=58.28 E-value=22 Score=32.34 Aligned_cols=64 Identities=19% Similarity=0.156 Sum_probs=38.6
Q ss_pred chhhHHHHHHHhhCCEEEE-cCc--ccccccCCCcchhhhhHHHhCCCccccchhhHHHHHHHHHHhccC--CCEEEEe-
Q 023387 13 RDITLRGLEAVKKCDKVYI-EAY--TSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQE--SNVAFLV- 86 (283)
Q Consensus 13 d~lT~~A~~~L~~aDvv~~-~~~--~~~l~~~i~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~i~~~~~~--~~V~~l~- 86 (283)
-.-++.++++|++||+|+. |++ +|+ +.. + . ...|.+.+++ -.+++++
T Consensus 171 a~~~p~vl~AI~~AD~IVlGPgsp~TSI------------~P~-----L------l----VpgI~eAL~~s~A~vV~Vsp 223 (303)
T cd07186 171 ARPAPEVLEAIEDADLVIIGPSNPVTSI------------GPI-----L------A----LPGIREALRDKKAPVVAVSP 223 (303)
T ss_pred CCCCHHHHHHHHhCCEEEECCCccHHHh------------hhh-----c------c----chhHHHHHHhCCCCEEEEcC
Confidence 4678999999999997664 442 121 111 0 0 1122222222 3666676
Q ss_pred -cCCCCCCccHHHHHHHH
Q 023387 87 -VGDPFGATTHTDLVVRA 103 (283)
Q Consensus 87 -~GDP~~~~~~~~l~~~l 103 (283)
.|+--+.++...+++.+
T Consensus 224 iig~~~v~Gpa~~~m~a~ 241 (303)
T cd07186 224 IIGGKAVSGPAAKLMAAL 241 (303)
T ss_pred CCCCCCCCchHHHHHHHc
Confidence 78888889988877654
No 40
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=58.08 E-value=34 Score=29.32 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcC
Q 023387 65 MVEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHN 115 (283)
Q Consensus 65 ~~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPG 115 (283)
..+++.+.+.+......-+.++.|+|+...-...|++.+++.|+++.+--+
T Consensus 57 ~~~~I~~~i~~~~~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETn 107 (212)
T COG0602 57 SADEILADIKSLGYKARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETN 107 (212)
T ss_pred CHHHHHHHHHhcCCCcceEEEeCCcCCCcccHHHHHHHHHhCCceEEecCC
Confidence 344555555543223346788999998876677899999988888877663
No 41
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=55.98 E-value=36 Score=29.58 Aligned_cols=54 Identities=19% Similarity=0.106 Sum_probs=39.1
Q ss_pred HHHHHHHHHhccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHh
Q 023387 67 EEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN 120 (283)
Q Consensus 67 ~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~ 120 (283)
+++.+.+.+.... -..+.++.|.|+++.-...+++.+++.|+++.+...-+-..
T Consensus 59 ~ei~~~i~~~~~~~~~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~ 113 (238)
T TIGR03365 59 EEVWQELKALGGGTPLHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQ 113 (238)
T ss_pred HHHHHHHHHHhCCCCCeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcH
Confidence 4455555443322 35688999999998767788999988899998877766544
No 42
>PRK01215 competence damage-inducible protein A; Provisional
Probab=55.21 E-value=59 Score=28.90 Aligned_cols=53 Identities=21% Similarity=0.188 Sum_probs=32.9
Q ss_pred EecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccc
Q 023387 5 IGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIAL 60 (283)
Q Consensus 5 VG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~ 60 (283)
+++=|.|++.|...-.++++++|+|+..|..+.-..++-+++ +.++.++++..
T Consensus 42 ~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~t~dD~t~ea---ia~~~g~~l~~ 94 (264)
T PRK01215 42 ITVVMDDIEEIVSAFREAIDRADVVVSTGGLGPTYDDKTNEG---FAKALGVELEL 94 (264)
T ss_pred EEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcCChhhhHHHH---HHHHhCCCCCC
Confidence 344467888898888889999999998775332111111222 55555666654
No 43
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=45.53 E-value=17 Score=31.50 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=20.3
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCc
Q 023387 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAY 34 (283)
Q Consensus 2 l~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~ 34 (283)
+++||.||+-.+.+.. -+++++++++.
T Consensus 55 v~vvG~gP~l~e~~~~------~~~~~vi~Adg 81 (232)
T COG1634 55 VAVVGAGPSLEEEIKG------LSSEVVIAADG 81 (232)
T ss_pred EEEECCCCcHhhhhcc------cccceEEeccH
Confidence 7899999987666555 56888887654
No 44
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=42.92 E-value=1.5e+02 Score=22.72 Aligned_cols=45 Identities=16% Similarity=0.019 Sum_probs=32.5
Q ss_pred CCEEEEecCCCCCCccHHHHHHHHHhCC-----CcEEEEcCCchHhHHH-HcCCcc
Q 023387 80 SNVAFLVVGDPFGATTHTDLVVRAKKLG-----IQVKAVHNASVMNAVG-ICGLQL 129 (283)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~l~~~~-----~~veiiPGISS~~a~a-~~g~pl 129 (283)
.+.++++.|| |+..+.+..+...+ .++=++|+-| .+.+| .+|+|.
T Consensus 50 ~d~vvv~GGD----GTi~~vvn~l~~~~~~~~~~plgiiP~GT-gNdfar~lgi~~ 100 (124)
T smart00046 50 FDRVLVCGGD----GTVGWVLNALDKRELPLPEPPVAVLPLGT-GNDLARSLGWGG 100 (124)
T ss_pred CCEEEEEccc----cHHHHHHHHHHhcccccCCCcEEEeCCCC-hhHHHHHcCCCC
Confidence 4578888999 67777777775543 6899999977 45444 488764
No 45
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=41.22 E-value=19 Score=32.93 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=16.1
Q ss_pred hhhHHHHHHHhhCCEE-EEcCc
Q 023387 14 DITLRGLEAVKKCDKV-YIEAY 34 (283)
Q Consensus 14 ~lT~~A~~~L~~aDvv-~~~~~ 34 (283)
.-+++|+++|++||+| ++|++
T Consensus 178 ~a~~eaveAI~~AD~IviGPgS 199 (323)
T COG0391 178 SAAPEAVEAIKEADLIVIGPGS 199 (323)
T ss_pred CCCHHHHHHHHhCCEEEEcCCc
Confidence 5578999999999955 54553
No 46
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=37.77 E-value=76 Score=24.47 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=25.0
Q ss_pred HHHHHHHhcc-C-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEc
Q 023387 69 KADKILSESQ-E-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVH 114 (283)
Q Consensus 69 ~~~~i~~~~~-~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiP 114 (283)
++..+.+.+. . -+.++|.+|| +-+..+++.+++.|.+|.++-
T Consensus 83 l~~d~~~~~~~~~~d~ivLvSgD----~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 83 LAVDILELAYENPPDTIVLVSGD----SDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp HHHHHHHHG--GG-SEEEEE-------GGGHHHHHHHHHH--EEEEEE
T ss_pred HHHHHHHHhhccCCCEEEEEECc----HHHHHHHHHHHHcCCEEEEEE
Confidence 3334444442 2 4889999999 456678888888899999887
No 47
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=37.13 E-value=1e+02 Score=24.06 Aligned_cols=41 Identities=29% Similarity=0.342 Sum_probs=29.2
Q ss_pred HHHHhccC--CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCC
Q 023387 72 KILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNA 116 (283)
Q Consensus 72 ~i~~~~~~--~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGI 116 (283)
.+.+.+.. -++++|.+||- -+..+++.+++.|.+|.++.=-
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~----Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDS----DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCc----cHHHHHHHHHHcCCEEEEEccC
Confidence 34444433 47899999995 4556788888889999877544
No 48
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=35.53 E-value=1.3e+02 Score=24.99 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=32.8
Q ss_pred HHHhcc--CCCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHh
Q 023387 73 ILSESQ--ESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN 120 (283)
Q Consensus 73 i~~~~~--~~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~ 120 (283)
+.+.+. .-+.++|.|||- -+..+++.+++.|.++++++....++
T Consensus 102 ~~~l~~~~~~D~ivl~SgD~----DF~p~v~~~~~~G~rv~v~~~~~~~s 147 (181)
T COG1432 102 AMELADKKNVDTIVLFSGDG----DFIPLVEAARDKGKRVEVAGIEPMTS 147 (181)
T ss_pred HHHhhcccCCCEEEEEcCCc----cHHHHHHHHHHcCCEEEEEecCCcCH
Confidence 444443 368899999995 44566888888999999998887554
No 49
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=35.09 E-value=86 Score=28.81 Aligned_cols=52 Identities=13% Similarity=0.026 Sum_probs=35.1
Q ss_pred HHHHHHHhccC-CCEEEEecC-CCCCCccHHHHHHHHHhCCCcEEEE-cCCchHh
Q 023387 69 KADKILSESQE-SNVAFLVVG-DPFGATTHTDLVVRAKKLGIQVKAV-HNASVMN 120 (283)
Q Consensus 69 ~~~~i~~~~~~-~~V~~l~~G-DP~~~~~~~~l~~~l~~~~~~veii-PGISS~~ 120 (283)
..+.+.+.+++ +.++++..| ||+++|.-..+.+.+.-.|...... ||+|--.
T Consensus 100 ~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~lp~g~~yt~wG~g~s~gh 154 (324)
T TIGR01921 100 HRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVLPKGQTYTFWGPGLSQGH 154 (324)
T ss_pred HHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccCCCCcceeccCCCcCchh
Confidence 44555555664 789998855 9999998766666654445555544 7777654
No 50
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=34.52 E-value=1.2e+02 Score=28.87 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhccC--CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHh
Q 023387 66 VEEKADKILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN 120 (283)
Q Consensus 66 ~~~~~~~i~~~~~~--~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~ 120 (283)
.++...+|.+.+++ =+.|+|+|..+.+.-.+..+.+.+.+.||++-.+--+..++
T Consensus 321 a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~ 377 (431)
T TIGR01917 321 SKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIA 377 (431)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHH
Confidence 34456677777755 38899999999888888888999988899999888777765
No 51
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=34.29 E-value=69 Score=29.48 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=44.3
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccccchhhHHHHHHHHHHhccC--
Q 023387 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQE-- 79 (283)
Q Consensus 2 l~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~i~~~~~~-- 79 (283)
+.|+|.|| -.+++..+.+....+.+|+.+.... .++..+.+.+.......... .....+.+.-.+
T Consensus 172 V~V~GaGp--IGLla~~~a~~~Ga~~Viv~d~~~~---------Rl~~A~~~~g~~~~~~~~~~--~~~~~~~~~t~g~g 238 (350)
T COG1063 172 VVVVGAGP--IGLLAIALAKLLGASVVIVVDRSPE---------RLELAKEAGGADVVVNPSED--DAGAEILELTGGRG 238 (350)
T ss_pred EEEECCCH--HHHHHHHHHHHcCCceEEEeCCCHH---------HHHHHHHhCCCeEeecCccc--cHHHHHHHHhCCCC
Confidence 56888888 5699999999999999999754322 22223443333322211111 122334333333
Q ss_pred CCEEEEecCCC
Q 023387 80 SNVAFLVVGDP 90 (283)
Q Consensus 80 ~~V~~l~~GDP 90 (283)
-++++-++|.|
T Consensus 239 ~D~vie~~G~~ 249 (350)
T COG1063 239 ADVVIEAVGSP 249 (350)
T ss_pred CCEEEECCCCH
Confidence 48999999954
No 52
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=34.12 E-value=1.4e+02 Score=24.45 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=29.0
Q ss_pred HHHHHH--hhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccccchhhHHHHHHHHHHhccC-CCEEEEecCCCC
Q 023387 18 RGLEAV--KKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQE-SNVAFLVVGDPF 91 (283)
Q Consensus 18 ~A~~~L--~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~i~~~~~~-~~V~~l~~GDP~ 91 (283)
.|.+.+ +.+|+|++.|.+..+ ++...+.+++.-.... .++.+.+....+. ++++++......
T Consensus 25 ~a~~~~~~~g~dViIsRG~ta~~-----------lr~~~~iPVV~I~~s~-~Dil~al~~a~~~~~~Iavv~~~~~~ 89 (176)
T PF06506_consen 25 EARQLLESEGADVIISRGGTAEL-----------LRKHVSIPVVEIPISG-FDILRALAKAKKYGPKIAVVGYPNII 89 (176)
T ss_dssp HHHHHHTTTT-SEEEEEHHHHHH-----------HHCC-SS-EEEE---H-HHHHHHHHHCCCCTSEEEEEEESS-S
T ss_pred HHHHhhHhcCCeEEEECCHHHHH-----------HHHhCCCCEEEECCCH-hHHHHHHHHHHhcCCcEEEEeccccc
Confidence 444443 779999987754322 3332333333211111 2344444433233 689998886654
No 53
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=33.96 E-value=70 Score=26.24 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=27.0
Q ss_pred CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcC
Q 023387 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHN 115 (283)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPG 115 (283)
=++.+|++|| +=+..|++++++.|..|.++-.
T Consensus 106 iD~~vLvSgD----~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 106 IDAVALVTRD----ADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred CCEEEEEecc----HhHHHHHHHHHHCCCEEEEEeC
Confidence 4788999999 5677899999999999988863
No 54
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=33.33 E-value=65 Score=27.23 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=33.3
Q ss_pred ecCCCCcchhhHHHHHHHh--hCCEEEEcCcccccccCCCcchhhhhHHHhCCCcc
Q 023387 6 GLGLGDERDITLRGLEAVK--KCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIA 59 (283)
Q Consensus 6 G~GPG~~d~lT~~A~~~L~--~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~ 59 (283)
++=|-|++.|...-.++++ ++|+|+.-|.++.-..++-+++ ++++.++++.
T Consensus 45 ~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~rDvTpeA---v~~l~~keip 97 (193)
T PRK09417 45 RLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPARRDVTPEA---TLAVADKEMP 97 (193)
T ss_pred EECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCcHHHH---HHHHhCCcCC
Confidence 4557888888877778885 7999998876553322222333 5566666653
No 55
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=32.65 E-value=67 Score=24.82 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=33.0
Q ss_pred CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH
Q 023387 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV 122 (283)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~ 122 (283)
|++.+..+|-...+- ...+++.|++.|+++.++---++....
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 578888899887777 668889999889999999888887654
No 56
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=31.46 E-value=1.6e+02 Score=28.17 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCCCCCCcc--HHHHHHHHHh
Q 023387 65 MVEEKADKILSESQESNVAFLVVGDPFGATT--HTDLVVRAKK 105 (283)
Q Consensus 65 ~~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~--~~~l~~~l~~ 105 (283)
.+++..++|.+. .+-+-++|+.|||++.+. ..++++.+.+
T Consensus 142 ei~~~i~yI~~~-p~I~~VlLSGGDPLll~d~~L~~iL~~L~~ 183 (417)
T TIGR03820 142 QILEGIEYIRNT-PQIRDVLLSGGDPLLLSDDYLDWILTELRA 183 (417)
T ss_pred HHHHHHHHHHhc-CCCCEEEEeCCccccCChHHHHHHHHHHhh
Confidence 444444545431 233558999999998765 3445566655
No 57
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=31.44 E-value=86 Score=28.68 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=31.9
Q ss_pred CEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHHHHc
Q 023387 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGIC 125 (283)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~a~~ 125 (283)
.+++=.+|.|+++.-...+++.+++.|+.+.+.-.-+-...+..+
T Consensus 132 ~v~iSl~GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~e~l~~L 176 (322)
T PRK13762 132 HVAISLSGEPTLYPYLPELIEEFHKRGFTTFLVTNGTRPDVLEKL 176 (322)
T ss_pred EEEEeCCccccchhhHHHHHHHHHHcCCCEEEECCCCCHHHHHHH
Confidence 455555899999987888899999889988876544433333333
No 58
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=31.38 E-value=1e+02 Score=23.65 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=30.1
Q ss_pred HHHHHHHhccC--CCEEEEecCCCCC---CccHHHHHHHHHhCCC-cEEEEcCCchH
Q 023387 69 KADKILSESQE--SNVAFLVVGDPFG---ATTHTDLVVRAKKLGI-QVKAVHNASVM 119 (283)
Q Consensus 69 ~~~~i~~~~~~--~~V~~l~~GDP~~---~~~~~~l~~~l~~~~~-~veiiPGISS~ 119 (283)
..+++++.+.+ ..-+.+..|+|++ +....++++.+++.+. .+.+.-..+.+
T Consensus 40 ~~~~ii~~~~~~~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~~~~~~~~tng~~~ 96 (139)
T PF13353_consen 40 IIEEIIEELKNYGIKGIVLTGGEPLLHENYDELLEILKYIKEKFPKKIIILTNGYTL 96 (139)
T ss_dssp HHHHHCHHHCCCCCCEEEEECSTGGGHHSHHHHHHHHHHHHHTT-SEEEEEETT--H
T ss_pred hhhhhhhHHhcCCceEEEEcCCCeeeeccHhHHHHHHHHHHHhCCCCeEEEECCCch
Confidence 44555555533 3556677899999 6666677777877665 34444444333
No 59
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=29.69 E-value=1.6e+02 Score=28.04 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhccC--CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHh
Q 023387 66 VEEKADKILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN 120 (283)
Q Consensus 66 ~~~~~~~i~~~~~~--~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~ 120 (283)
.++...+|.+.+++ =+.|+|+|..+.+.-.+..+.+.+.+.|+++-.+--+..++
T Consensus 321 a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~~~pis 377 (431)
T TIGR01918 321 SKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCTVIPIA 377 (431)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeecccHh
Confidence 34556677777755 38899999999888888888999988899998888877765
No 60
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=27.64 E-value=1.7e+02 Score=26.56 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=37.7
Q ss_pred chhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccccchhhHHHHHHHHHHhccCCCEEEEe--cCCC
Q 023387 13 RDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQESNVAFLV--VGDP 90 (283)
Q Consensus 13 d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~i~~~~~~~~V~~l~--~GDP 90 (283)
-.-|++++++|++||+|+......+. + +... + . ...|.+.+....|+.++ .|+-
T Consensus 173 a~a~p~vl~AI~~AD~IiiGPgnp~T-------S--I~P~-----L------~----v~gi~eAL~~a~vV~Vsp~Ig~~ 228 (303)
T PRK13606 173 AKPAPGVLEAIEEADAVIIGPSNPVT-------S--IGPI-----L------A----VPGIREALTEAPVVAVSPIIGGA 228 (303)
T ss_pred CCCCHHHHHHHHhCCEEEECCCccHH-------h--hchh-----c------c----chhHHHHHhCCCEEEEcCCCCCC
Confidence 46789999999999998853211000 0 0110 0 0 11222223446777776 6777
Q ss_pred CCCccHHHHHHH
Q 023387 91 FGATTHTDLVVR 102 (283)
Q Consensus 91 ~~~~~~~~l~~~ 102 (283)
-+.|+...++..
T Consensus 229 ~v~GPA~~lm~a 240 (303)
T PRK13606 229 PVSGPAAKLMAA 240 (303)
T ss_pred cCCChhHHHHHH
Confidence 777877776654
No 61
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=27.36 E-value=72 Score=23.86 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=18.2
Q ss_pred CEEEEecCCCCCCccH---HHHHHHHHhCC--CcEEEEcC
Q 023387 81 NVAFLVVGDPFGATTH---TDLVVRAKKLG--IQVKAVHN 115 (283)
Q Consensus 81 ~V~~l~~GDP~~~~~~---~~l~~~l~~~~--~~veiiPG 115 (283)
.-+.+..|+|+++-.. ..+++.+.+.+ +.+.+.-.
T Consensus 49 ~~v~~~GGEPll~~~~~~l~~~i~~~~~~~~~~~i~i~TN 88 (119)
T PF13394_consen 49 STVVFTGGEPLLYLNPEDLIELIEYLKERGPEIKIRIETN 88 (119)
T ss_dssp -EEEEESSSGGGSTTHHHHHHHHCTSTT-----EEEEEE-
T ss_pred EEEEEECCCCccccCHHHHHHHHHHHHhhCCCceEEEEeC
Confidence 3477889999987333 34444444444 55555444
No 62
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=27.30 E-value=1.8e+02 Score=25.06 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=31.4
Q ss_pred HHHHHHhccCCCE-EEEecCCCCCCcc-H---HHHHHHHHhCCCcEEEEcCCchH
Q 023387 70 ADKILSESQESNV-AFLVVGDPFGATT-H---TDLVVRAKKLGIQVKAVHNASVM 119 (283)
Q Consensus 70 ~~~i~~~~~~~~V-~~l~~GDP~~~~~-~---~~l~~~l~~~~~~veiiPGISS~ 119 (283)
++.+++.++++.+ .++..||-.-++. . ..+++.+.+.+.++-.+||=.--
T Consensus 20 le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GNhD~ 74 (224)
T cd07388 20 LEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGPQDA 74 (224)
T ss_pred HHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCCCCh
Confidence 3445554443333 6778999866663 2 23455565556789999998553
No 63
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=27.28 E-value=1.3e+02 Score=23.19 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=12.0
Q ss_pred EEEecCCCCcchhhHHHHHHHhh
Q 023387 3 YIIGLGLGDERDITLRGLEAVKK 25 (283)
Q Consensus 3 ~iVG~GPG~~d~lT~~A~~~L~~ 25 (283)
.+||+|--+.-.++.+|.+.+++
T Consensus 65 ivvGTG~~G~l~l~~ea~e~~r~ 87 (121)
T COG1504 65 IVVGTGQSGMLELSEEAREFFRK 87 (121)
T ss_pred EEEecCceeEEEeCHHHHHHHHh
Confidence 45555555555555555555543
No 64
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=26.31 E-value=2.4e+02 Score=23.76 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhccC-CCEEEEecCCCCCCcc-HH------HHHHHHHhCCCcEEEEcCCc
Q 023387 66 VEEKADKILSESQE-SNVAFLVVGDPFGATT-HT------DLVVRAKKLGIQVKAVHNAS 117 (283)
Q Consensus 66 ~~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~-~~------~l~~~l~~~~~~veiiPGIS 117 (283)
..+..+.+.+.+.+ +--.++..||-.-.+. .. ..++.+.+.++++-++||=-
T Consensus 20 ~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNH 79 (214)
T cd07399 20 FDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNH 79 (214)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 34455667666655 3346777999765554 21 33455554567888888853
No 65
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=26.08 E-value=86 Score=27.03 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=27.2
Q ss_pred EEEEec---CCCCcchhhHHHHHHHhhCCEEEEcC
Q 023387 2 LYIIGL---GLGDERDITLRGLEAVKKCDKVYIEA 33 (283)
Q Consensus 2 l~iVG~---GPG~~d~lT~~A~~~L~~aDvv~~~~ 33 (283)
+|++|+ +|-+...+.....++++++|.|+.+-
T Consensus 12 ~yL~GT~H~~~~~~~~~~~~i~~a~~~sd~v~~E~ 46 (259)
T PF01963_consen 12 VYLLGTIHVSPKSFYPLPDAIEEALKKSDVVVVEL 46 (259)
T ss_pred EEEEeccCCCchhhhhhHHHHHHHHhcCCEEEEec
Confidence 688887 66666789999999999999999876
No 66
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=24.63 E-value=2.3e+02 Score=23.09 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=34.1
Q ss_pred HHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccccchhhHHHHHHHHHHhccC-CCEEEEecCCCCCCccHHHH
Q 023387 21 EAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQE-SNVAFLVVGDPFGATTHTDL 99 (283)
Q Consensus 21 ~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l 99 (283)
+++++||++++++..-.. +..+.+.++.. +-.-.+....+++.+.. +.-+++..|+|-.- ...
T Consensus 1 ~~~~~adlv~~DG~~i~~-----------~~~~~g~~~~~--rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~---~~~ 64 (172)
T PF03808_consen 1 EALNSADLVLPDGMPIVW-----------AARLLGRPLPE--RVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVL---EKA 64 (172)
T ss_pred ChHHhCCEEecCCHHHHH-----------HHHHcCCCCCc--ccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHH---HHH
Confidence 478999999987742111 22222433311 11112344555555443 44567777777432 233
Q ss_pred HHHHHh
Q 023387 100 VVRAKK 105 (283)
Q Consensus 100 ~~~l~~ 105 (283)
.+.+++
T Consensus 65 ~~~l~~ 70 (172)
T PF03808_consen 65 AANLRR 70 (172)
T ss_pred HHHHHH
Confidence 444544
No 67
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=24.28 E-value=1.8e+02 Score=27.23 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCCCCCccH--HHHHHHHHh
Q 023387 64 EMVEEKADKILSESQESNVAFLVVGDPFGATTH--TDLVVRAKK 105 (283)
Q Consensus 64 ~~~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~--~~l~~~l~~ 105 (283)
..|+..+++|.+. .+-+=++++.|||+.-+.. .+++++|++
T Consensus 144 ~~~~~al~YIa~h-PeI~eVllSGGDPL~ls~~~L~~ll~~L~~ 186 (369)
T COG1509 144 EEWDKALDYIAAH-PEIREVLLSGGDPLSLSDKKLEWLLKRLRA 186 (369)
T ss_pred HHHHHHHHHHHcC-chhheEEecCCCccccCHHHHHHHHHHHhc
Confidence 3455555555431 2224489999999888764 346666665
No 68
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=24.28 E-value=2.2e+02 Score=26.53 Aligned_cols=43 Identities=28% Similarity=0.314 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhccC-CCEEEEecCCCCCCccH--HHHHHHHHhCCCcEE
Q 023387 65 MVEEKADKILSESQE-SNVAFLVVGDPFGATTH--TDLVVRAKKLGIQVK 111 (283)
Q Consensus 65 ~~~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~--~~l~~~l~~~~~~ve 111 (283)
.....++.|++. + ++|++++ ||--.|.+ ..+.+.|++.|++|.
T Consensus 54 p~~~cad~ii~~--gi~rVVi~~--D~d~~G~~~~~~~~~~L~~aGi~V~ 99 (360)
T PRK14719 54 PVFQIADDLIAE--NISEVILLT--DFDRAGRVYAKNIMEEFQSRGIKVN 99 (360)
T ss_pred chHHHHHHHHHc--CCCEEEEEE--CCCCCCCccchHHHHHHHHCCCEEE
Confidence 334466666542 4 7888888 87655433 456788888888883
No 69
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=23.96 E-value=88 Score=20.37 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=24.1
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEE
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVY 30 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~ 30 (283)
++.+||.|-.+...+..+..++|.++.+=+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v 32 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNI 32 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCE
Confidence 478999988777788889999998876544
No 70
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=23.88 E-value=3.1e+02 Score=22.66 Aligned_cols=45 Identities=20% Similarity=0.263 Sum_probs=21.3
Q ss_pred HHHHHHHhccCCCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEE
Q 023387 69 KADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAV 113 (283)
Q Consensus 69 ~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veii 113 (283)
..+.+++.+.+++.-++..|--.-.+....+++.+++.|+.++++
T Consensus 81 ~~~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~ 125 (199)
T PF06414_consen 81 LAEKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELY 125 (199)
T ss_dssp HHHHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEE
T ss_pred HHHHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEE
Confidence 455555555333333333331111123333778888888888765
No 71
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=23.60 E-value=1.9e+02 Score=26.26 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=19.2
Q ss_pred CEEEEecCCCCCCc--cHHHHHHHHHhC
Q 023387 81 NVAFLVVGDPFGAT--THTDLVVRAKKL 106 (283)
Q Consensus 81 ~V~~l~~GDP~~~~--~~~~l~~~l~~~ 106 (283)
+-++++.|||++.+ ...++++.+.+.
T Consensus 138 ~~VilSGGDPl~~~~~~L~~ll~~l~~i 165 (321)
T TIGR03822 138 WEVILTGGDPLVLSPRRLGDIMARLAAI 165 (321)
T ss_pred cEEEEeCCCcccCCHHHHHHHHHHHHhC
Confidence 55889999999875 345677777664
No 72
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.50 E-value=1.2e+02 Score=19.86 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=24.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEE
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYI 31 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~ 31 (283)
|+.+||.|.-+...+..+..++|.+..+.+.
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~~i 33 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVRMI 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeEEE
Confidence 5789999986666777799999988777653
No 73
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=23.16 E-value=1.8e+02 Score=22.27 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=29.0
Q ss_pred CCEEEEecCCCCCCccHHHHHHHHHhC---CCcEEEEcCCchH
Q 023387 80 SNVAFLVVGDPFGATTHTDLVVRAKKL---GIQVKAVHNASVM 119 (283)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~l~~~---~~~veiiPGISS~ 119 (283)
.....+..|||+.+.....++..+.+. ++.+.+....+..
T Consensus 46 ~~~i~~~~gep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~ 88 (166)
T PF04055_consen 46 VKEIFFGGGEPTLHPDFIELLELLRKIKKRGIRISINTNGTLL 88 (166)
T ss_dssp HEEEEEESSTGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTH
T ss_pred CcEEEEeecCCCcchhHHHHHHHHHHhhccccceeeeccccch
Confidence 566788899999998887777776654 6666666555553
No 74
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=22.32 E-value=2.5e+02 Score=25.91 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=29.8
Q ss_pred CEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchH
Q 023387 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVM 119 (283)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~ 119 (283)
..+.++.|+|++..-..++++.+++.|+.+.+.-.-+-+
T Consensus 64 ~~v~~~GGEPll~~~~~~il~~~~~~g~~~~i~TNG~ll 102 (378)
T PRK05301 64 LQLHFSGGEPLLRKDLEELVAHARELGLYTNLITSGVGL 102 (378)
T ss_pred cEEEEECCccCCchhHHHHHHHHHHcCCcEEEECCCccC
Confidence 446677999999988888888888888877776555444
No 75
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=22.10 E-value=2.2e+02 Score=21.92 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=23.6
Q ss_pred cCCCCcchhhHHHHHHHhhCCEEEEcCccc
Q 023387 7 LGLGDERDITLRGLEAVKKCDKVYIEAYTS 36 (283)
Q Consensus 7 ~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~ 36 (283)
+=|.|++.|...-.++++++|+|+.-+.++
T Consensus 39 ~v~Dd~~~I~~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 39 IVPDDKEAIKEALREALERADLVITTGGTG 68 (135)
T ss_pred EeCCCHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 336788888888888888999999876544
No 76
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=22.07 E-value=93 Score=20.95 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=22.9
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEE
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVY 30 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~ 30 (283)
++.+||.|..+++ +..+..++|.+..+=+
T Consensus 4 ~VsvVG~gm~~~g-v~~ki~~~L~~~~I~v 32 (66)
T cd04915 4 IVSVIGRDLSTPG-VLARGLAALAEAGIEP 32 (66)
T ss_pred EEEEECCCCCcch-HHHHHHHHHHHCCCCE
Confidence 3789999997664 8889999998776544
No 77
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=21.98 E-value=3.3e+02 Score=24.82 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=32.1
Q ss_pred EEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcC
Q 023387 82 VAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICG 126 (283)
Q Consensus 82 V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g 126 (283)
.|+++-+-|..- |..+.+.|++.|+++.+|+ -|++.++ .+..
T Consensus 147 ~V~VtESRP~~e--G~~~ak~L~~~gI~~~~I~-Dsa~~~~~~~vd 189 (301)
T COG1184 147 KVIVTESRPRGE--GRIMAKELRQSGIPVTVIV-DSAVGAFMSRVD 189 (301)
T ss_pred EEEEEcCCCcch--HHHHHHHHHHcCCceEEEe-chHHHHHHHhCC
Confidence 588889999886 5578899999999999998 4555544 5443
No 78
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=21.70 E-value=1.4e+02 Score=28.26 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=39.5
Q ss_pred HHHHHHHHHhccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhH
Q 023387 67 EEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNA 121 (283)
Q Consensus 67 ~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a 121 (283)
++..+.+.+.-+. ++.+++-+|--.+.-.+.-.++.|.+.|+...+|-|.|+=+.
T Consensus 68 ~~kl~ff~~~r~~fGrtAlvlsGGg~~G~~h~Gv~kaL~e~gl~p~~i~GtS~Gai 123 (391)
T cd07229 68 QAKLDFFHDTRQSFGRTALVLQGGSIFGLCHLGVVKALWLRGLLPRIITGTATGAL 123 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCcHHHHHHHHHHHHHHHHcCCCCceEEEecHHHH
Confidence 3344555544455 788888877665544555678889999999999999988653
No 79
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=21.66 E-value=6.6e+02 Score=23.71 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHhc--c--CCCEEEEecC------CCCC------Cc-cHHHHHHHHHhCCCcEEEEcCCc
Q 023387 65 MVEEKADKILSES--Q--ESNVAFLVVG------DPFG------AT-THTDLVVRAKKLGIQVKAVHNAS 117 (283)
Q Consensus 65 ~~~~~~~~i~~~~--~--~~~V~~l~~G------DP~~------~~-~~~~l~~~l~~~~~~veiiPGIS 117 (283)
.++++...+...+ + .++.++++.| ||.= .| +|..+.+.+.+.|.+|.++-|-.
T Consensus 169 ~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~ 238 (399)
T PRK05579 169 EPEEIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPV 238 (399)
T ss_pred CHHHHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCc
Confidence 3455655555443 2 2567888888 6622 13 57788899988899998876543
No 80
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.63 E-value=2.3e+02 Score=26.25 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=25.7
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcC
Q 023387 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEA 33 (283)
Q Consensus 2 l~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~ 33 (283)
+-+.|+|| -.++|..+.+++-.+|||+.+-
T Consensus 173 vLV~GAGP--IGl~t~l~Aka~GA~~VVi~d~ 202 (354)
T KOG0024|consen 173 VLVLGAGP--IGLLTGLVAKAMGASDVVITDL 202 (354)
T ss_pred EEEECCcH--HHHHHHHHHHHcCCCcEEEeec
Confidence 45778888 5699999999999999999764
No 81
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=21.43 E-value=3.4e+02 Score=24.49 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=36.4
Q ss_pred CCEEEEecCCCCCCccHHHHHHHHHhCCCc-EEEEcCCchHhHHHH-cCCccc
Q 023387 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQ-VKAVHNASVMNAVGI-CGLQLY 130 (283)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~-veiiPGISS~~a~a~-~g~pl~ 130 (283)
-+.++...|| |+..+.+..+...+.+ +=++|+-|. +.+|+ +|+|..
T Consensus 59 ~D~via~GGD----GTv~evingl~~~~~~~LgilP~GT~-NdfAr~Lgip~~ 106 (301)
T COG1597 59 YDTVIAAGGD----GTVNEVANGLAGTDDPPLGILPGGTA-NDFARALGIPLD 106 (301)
T ss_pred CCEEEEecCc----chHHHHHHHHhcCCCCceEEecCCch-HHHHHHcCCCch
Confidence 6889999999 7777888888777777 899998654 55554 899985
No 82
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=20.84 E-value=2.6e+02 Score=21.19 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=13.7
Q ss_pred HHHHHHHhhCCEEEEcC
Q 023387 17 LRGLEAVKKCDKVYIEA 33 (283)
Q Consensus 17 ~~A~~~L~~aDvv~~~~ 33 (283)
....++|+.||+|++.+
T Consensus 55 ~~~~~~l~~c~vvi~~~ 71 (119)
T TIGR02663 55 APKIEALKDCAILYCLA 71 (119)
T ss_pred HHHHHHhCCCcEEEEhh
Confidence 44578889999999754
No 83
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=20.71 E-value=1.4e+02 Score=27.93 Aligned_cols=11 Identities=9% Similarity=-0.046 Sum_probs=7.1
Q ss_pred CCEEEEecCCC
Q 023387 80 SNVAFLVVGDP 90 (283)
Q Consensus 80 ~~V~~l~~GDP 90 (283)
-+|.+++..++
T Consensus 32 ~~V~ii~~~~~ 42 (415)
T cd03816 32 WKVDLVGYLET 42 (415)
T ss_pred ceEEEEEecCC
Confidence 57777775544
No 84
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=20.57 E-value=2.9e+02 Score=22.09 Aligned_cols=48 Identities=10% Similarity=0.094 Sum_probs=31.2
Q ss_pred HHHHHHHHHhccCCCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcC
Q 023387 67 EEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHN 115 (283)
Q Consensus 67 ~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPG 115 (283)
+++.+.|.+....-.-+.++.|+ +.+.-...+++.+++.|+++.+..|
T Consensus 49 eel~~~I~~~~~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l~Tg 96 (147)
T TIGR02826 49 EYLTKTLDKYRSLISCVLFLGGE-WNREALLSLLKIFKEKGLKTCLYTG 96 (147)
T ss_pred HHHHHHHHHhCCCCCEEEEechh-cCHHHHHHHHHHHHHCCCCEEEECC
Confidence 44555554432223568888999 6656566778888887777777665
No 85
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=20.37 E-value=3e+02 Score=25.16 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=28.2
Q ss_pred CEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCc
Q 023387 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNAS 117 (283)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGIS 117 (283)
..+.++.|+|++..-..++++.+++.|+.+.+.---+
T Consensus 55 ~~v~~~GGEPll~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 55 LQLHFSGGEPLARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred cEEEEeCccccccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 4466789999998878888888888887776654433
No 86
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=20.33 E-value=3.1e+02 Score=21.57 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=28.4
Q ss_pred CCEEEEecCCCCCCccHHHHHHHHHhC--CCcEEEEcCCch
Q 023387 80 SNVAFLVVGDPFGATTHTDLVVRAKKL--GIQVKAVHNASV 118 (283)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~l~~~--~~~veiiPGISS 118 (283)
....++..|||+.......+++.+.+. ++.+.+.-....
T Consensus 45 ~~~i~~~ggep~~~~~~~~~i~~~~~~~~~~~~~i~T~~~~ 85 (204)
T cd01335 45 VEVVILTGGEPLLYPELAELLRRLKKELPGFEISIETNGTL 85 (204)
T ss_pred ceEEEEeCCcCCccHhHHHHHHHHHhhCCCceEEEEcCccc
Confidence 566777899999887666777777776 667766655544
No 87
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.09 E-value=1.2e+02 Score=19.68 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=23.2
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEE
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVY 30 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~ 30 (283)
++.+||.|..+...+..+..++|.++.+=+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v 32 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINV 32 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCE
Confidence 478899998776677778999998876544
Done!