Query 023387
Match_columns 283
No_of_seqs 179 out of 1227
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 05:54:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i4t_A Diphthine synthase; nia 100.0 2E-48 6.8E-53 347.9 22.3 268 1-273 22-290 (292)
2 2z6r_A Diphthine synthase; met 100.0 2.8E-45 9.4E-50 324.8 28.7 255 1-274 2-257 (265)
3 1vhv_A Diphthine synthase; str 100.0 4.8E-41 1.6E-45 298.0 25.4 241 1-274 14-256 (268)
4 1wde_A Probable diphthine synt 100.0 1.5E-40 5.1E-45 298.5 21.0 251 1-273 9-267 (294)
5 4e16_A Precorrin-4 C(11)-methy 100.0 6.6E-36 2.3E-40 262.8 23.0 221 1-259 6-232 (253)
6 1cbf_A Cobalt-precorrin-4 tran 100.0 6.9E-36 2.4E-40 267.0 22.3 221 1-259 22-248 (285)
7 1s4d_A Uroporphyrin-III C-meth 100.0 1.2E-35 4.2E-40 264.7 23.9 230 1-271 16-259 (280)
8 3ndc_A Precorrin-4 C(11)-methy 100.0 1.7E-35 5.8E-40 261.6 21.9 216 1-258 5-229 (264)
9 1ve2_A Uroporphyrin-III C-meth 100.0 1.3E-35 4.5E-40 258.1 19.4 219 1-271 4-232 (235)
10 2ybo_A Methyltransferase; SUMT 100.0 3.4E-35 1.2E-39 263.5 22.5 218 1-258 26-256 (294)
11 1va0_A Uroporphyrin-III C-meth 100.0 1E-34 3.5E-39 253.1 19.0 215 1-258 2-220 (239)
12 3nut_A Precorrin-3 methylase; 100.0 2.2E-34 7.6E-39 252.8 19.4 215 1-259 10-234 (251)
13 1pjq_A CYSG, siroheme synthase 100.0 2.5E-34 8.7E-39 272.4 17.3 230 1-271 217-455 (457)
14 2qbu_A Precorrin-2 methyltrans 100.0 1.4E-32 4.9E-37 238.3 24.9 208 1-258 4-228 (232)
15 2e0n_A Precorrin-2 C20-methylt 100.0 4.7E-34 1.6E-38 251.8 15.5 211 1-258 6-234 (259)
16 2zvb_A Precorrin-3 C17-methylt 100.0 7.1E-33 2.4E-37 248.1 20.2 215 1-258 3-245 (295)
17 1wyz_A Putative S-adenosylmeth 100.0 5.3E-33 1.8E-37 242.7 17.8 213 1-259 4-235 (242)
18 3kwp_A Predicted methyltransfe 100.0 1E-31 3.5E-36 240.5 18.5 211 1-257 17-236 (296)
19 2npn_A Putative cobalamin synt 100.0 7.6E-31 2.6E-35 230.3 15.4 194 1-243 4-225 (251)
20 2bb3_A Cobalamin biosynthesis 100.0 7.7E-31 2.6E-35 226.0 11.1 191 1-258 23-216 (221)
21 3nd1_A Precorrin-6A synthase/C 100.0 5.8E-30 2E-34 226.8 12.5 194 2-243 24-246 (275)
22 3hh1_A Tetrapyrrole methylase 99.9 4.7E-23 1.6E-27 160.1 10.7 107 1-116 7-117 (117)
23 3ffy_A Putative tetrapyrrole ( 98.9 1.5E-08 5.1E-13 77.7 10.0 107 114-257 1-112 (115)
24 2pju_A Propionate catabolism o 53.1 34 0.0012 28.3 6.7 24 12-35 48-73 (225)
25 2q5c_A NTRC family transcripti 46.4 77 0.0026 25.4 7.8 23 13-35 39-61 (196)
26 3kbq_A Protein TA0487; structu 45.0 48 0.0017 26.2 6.1 53 5-60 42-94 (172)
27 2qip_A Protein of unknown func 37.2 62 0.0021 25.0 5.7 38 73-114 102-140 (165)
28 3sho_A Transcriptional regulat 28.4 1.9E+02 0.0065 22.1 7.3 96 63-170 26-123 (187)
29 3l7o_A Ribose-5-phosphate isom 27.9 1.4E+02 0.0047 24.7 6.4 60 68-134 7-73 (225)
30 1wqc_A OMTX1; toxin; NMR {Opis 27.5 12 0.00039 19.7 -0.2 6 278-283 9-14 (26)
31 3mvn_A UDP-N-acetylmuramate:L- 26.8 55 0.0019 25.2 3.6 37 65-103 124-161 (163)
32 3c66_C PRE-mRNA polyadenylatio 25.2 16 0.00055 19.3 0.1 12 3-15 4-15 (26)
33 1wqe_A OMTX3; structure, scorp 23.9 9.8 0.00034 20.0 -0.9 6 278-283 10-15 (26)
34 1rlf_A RLF, RLF-RBD; signal tr 22.9 2E+02 0.0069 20.1 6.0 49 227-278 1-51 (90)
35 3mcu_A Dipicolinate synthase, 21.2 95 0.0032 25.3 4.1 42 78-119 4-45 (207)
36 3kwm_A Ribose-5-phosphate isom 20.8 1.9E+02 0.0064 23.8 5.9 60 68-134 15-78 (224)
37 2f8m_A Ribose 5-phosphate isom 20.7 2.3E+02 0.0077 23.7 6.5 61 67-132 14-81 (244)
38 2ab1_A Hypothetical protein; H 20.7 2.5E+02 0.0087 20.5 6.2 37 80-116 62-98 (122)
39 3av0_A DNA double-strand break 20.7 2.1E+02 0.0072 25.1 6.8 48 69-116 48-104 (386)
40 3lqk_A Dipicolinate synthase s 20.4 96 0.0033 25.1 4.0 41 78-118 6-46 (201)
41 1uj6_A Ribose 5-phosphate isom 20.3 2E+02 0.0068 23.6 6.0 58 67-131 10-75 (227)
No 1
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica}
Probab=100.00 E-value=2e-48 Score=347.85 Aligned_cols=268 Identities=56% Similarity=0.945 Sum_probs=214.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccccchhhHHHHHHHHHHhccCC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~i~~~~~~~ 80 (283)
|||+||+||||+++||++|+++|++||+|+|+.+++.. ....+. ++.+.++++...++..++++.+.+++.++++
T Consensus 22 ~l~lVG~GpGd~~~LT~rA~~~L~~ADvV~~e~~~s~~--~~~~~~---L~~~~~~~~i~~~~~~~~~~~~~i~~~a~~~ 96 (292)
T 3i4t_A 22 MLYIIGLGLYDEKDITVRGLEAVKSCDLVFLEHYTAIL--QCDVAK---LEEFYGKKVIIGDRDLVETEADQILEPAKTK 96 (292)
T ss_dssp EEEEEECBSSSGGGSCHHHHHHHHHCSEEEECGGGGGS--SSCHHH---HHHHHTSCCEEC-------CCCTTHHHHTTS
T ss_pred EEEEEEECCCChHHhhHHHHHHHHhCCEEEEecccccc--cCCHHH---HHhCCCCeEEEcccccHHHHHHHHHHHhcCC
Confidence 69999999999999999999999999999998865432 012333 5555555554434444555566677777669
Q ss_pred CEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHHHHcCCccccCCceeEEecccCCCCCCchhHHHHhhhcc
Q 023387 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRSL 160 (283)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~ 160 (283)
+||+|++|||++|+++.++++.+.+.|+++++||||||++|+|++|+||++++.+.++.+.+.|++|.++++.+..+...
T Consensus 97 ~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~A~a~~G~pl~~~~~~~sv~~~t~~~~p~~~~~~~~~~l~~ 176 (292)
T 3i4t_A 97 NVALLVVGDVYGATTHSDIFVRCQKMGIEVKVIHNASIMNAIGCSGLQLYRFGQTVSVCFWSEHWRPSSYYPKIKINRDN 176 (292)
T ss_dssp EEEEEESBCHHHHCTTHHHHHHHHHHTCCEEEECCCCHHHHGGGGSCCGGGBCCCEEECCCBTTBCCCTHHHHHHHHHHT
T ss_pred CEEEEecCCCCccccHHHHHHHHHHCCCcEEEECCHHHHHHHHHhCCCcccCCceeEEEEEeCCCCCCccHHHHHHHhhc
Confidence 99999999999999999999999888999999999999997789999999999999999999999998777888878888
Q ss_pred CccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEEehhc
Q 023387 161 GLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAGTMRL 240 (283)
Q Consensus 161 ~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~tl~e 240 (283)
+.||++++|...++.+++++++++.+|+++.+|.+.++++.|.++.+.+...++++++++++++++|+++|+++.+|+++
T Consensus 177 ~~~Tlvl~d~~~~e~~~~~~~~~~~~y~p~r~m~~~~~~~~L~~~~~~l~~~g~~~dtpv~vv~~~t~~~E~i~~~tL~~ 256 (292)
T 3i4t_A 177 NMHTLVLLDIKVKERSEESIIKGRDIFEPPRYMTINQCIEQLLEVEKEQHLGVYDEDTMVVGMARVACADQKIVYGKMKD 256 (292)
T ss_dssp TCBEEEEECEECCC-------------CCCEECCHHHHHHHHHHHHHHHCCCSCCTTCEEEEEESTTSTTCEEEEEEHHH
T ss_pred CCCeEEEEeccccccchhhccccccccCCccccCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeecCCCceEEEEEEHHH
Confidence 89999999999888889999999999999989999999999988655444457888999999999999999999999999
Q ss_pred hhhhhcCCCceEEEEeCC-CChhHHHHHhhccCC
Q 023387 241 LQMVDFGAPLHCLVIVGE-THPVEEEMLDFYRLT 273 (283)
Q Consensus 241 l~~~~~~~~~~sliI~~~-~~~~~~~~~~~~~~~ 273 (283)
+.+.+++.+.++++|+|+ +|++|.|+|++|..+
T Consensus 257 l~~~~~~~~~~~liivG~~l~~~e~e~l~~~~~~ 290 (292)
T 3i4t_A 257 LLHYDFGAPMHCLLIPAPQVDDPELDQLEYFKYK 290 (292)
T ss_dssp HTTCCCCSSCEEEEECCSSCCHHHHHHHGGGBCC
T ss_pred HHhhhcCCCCCEEEEECCcCCHHHHHHHHHhccC
Confidence 988777677899999995 999999999999764
No 2
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=100.00 E-value=2.8e-45 Score=324.76 Aligned_cols=255 Identities=45% Similarity=0.711 Sum_probs=211.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccccchhhHHHHHHHHH-HhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKIL-SESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~i~-~~~~~ 79 (283)
|||+||+|||||++||++|+++|++||+|+++++.+.+ .. ...++++.+.++++...++...+++.+.|. +.+++
T Consensus 2 ~l~iVG~GpG~~~~LT~~A~~~L~~advv~~~~~~~~l---~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 77 (265)
T 2z6r_A 2 VLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLM---AG-TTLGRIQRLIGKEIRVLSREDVELNFENIVLPLAKE 77 (265)
T ss_dssp CEEEEECBSSSGGGSBHHHHHHHHHCSEEEEECSSCCC---TT-CCHHHHHHHHTSCCEEECHHHHHHHHHHHTHHHHTT
T ss_pred EEEEEccCCCChHhcCHHHHHHHHhCCEEEEecccccc---cc-CCHHHHHhccCCcEEEcCcccHHHHHHHHHHHHhCC
Confidence 69999999999999999999999999999998765322 10 012336655565655444556677778887 77667
Q ss_pred CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHHHHcCCccccCCceeEEecccCCCCCCchhHHHHhhhc
Q 023387 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRS 159 (283)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~ 159 (283)
++||+|++|||++|+++.++++.+.+.|++++|+|||||++++|++|+||+++++++++++.+.|++|...++.+.....
T Consensus 78 ~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~veviPGiSs~~aaa~~g~pl~~~~~~~~v~~~s~~~~~~~~~~~l~~~~~ 157 (265)
T 2z6r_A 78 NDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAE 157 (265)
T ss_dssp SCEEEEESBCTTSSSSTHHHHHHHHHTTCCEEEECCCCHHHHGGGGTCCGGGBCCCEEECCCBTTBCCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCcCCCCHHHHHHHHHHCCCcEEEECChhHHHHHHHhCCCccCCCccEEEEEecCCcCCCchHHHHHHHHh
Confidence 89999999999999999999999998899999999999999667799999999899999888889988665566766666
Q ss_pred cCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEEehh
Q 023387 160 LGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAGTMR 239 (283)
Q Consensus 160 ~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~tl~ 239 (283)
.+.+|++++|.+.++ +.||++++..+.|.+.+++.+.+++++++++++++++|+++|+++.++++
T Consensus 158 ~~~~tlvl~d~~~~~---------------~~y~~~~~~~~~l~~~~~~l~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~ 222 (265)
T 2z6r_A 158 RGLHTLLFLDIKAEK---------------RMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVK 222 (265)
T ss_dssp TTCBEEEEECEEGGG---------------TEECCHHHHHHHHHHHHHHHCCSSSCTTCEEEEEESTTSSSCEEEEEEHH
T ss_pred CCCceEEEEeccccc---------------ccccCHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeCCCCceEEEEeeHH
Confidence 666899988865432 34788888888888888888877899999999999999999999999999
Q ss_pred chhhhhcCCCceEEEEeCCCChhHHHHHhhccCCC
Q 023387 240 LLQMVDFGAPLHCLVIVGETHPVEEEMLDFYRLTD 274 (283)
Q Consensus 240 el~~~~~~~~~~sliI~~~~~~~~~~~~~~~~~~~ 274 (283)
++.+.++..++++++|+|+.+..|+++|+||..+.
T Consensus 223 ~l~~~~~~~~~~~lii~g~~~~~~~~~l~~~~~~~ 257 (265)
T 2z6r_A 223 DLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAP 257 (265)
T ss_dssp HHTTCCCCSSCEEEEECCSCCHHHHHHHHHHHCCC
T ss_pred HHhhhhcCCCCcEEEEECCCchHHHHHHHHHhcCc
Confidence 99876655689999999999999999999997643
No 3
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=100.00 E-value=4.8e-41 Score=297.98 Aligned_cols=241 Identities=36% Similarity=0.644 Sum_probs=186.2
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccccchhhHHHHHHHHHHhccCC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~i~~~~~~~ 80 (283)
+||+||+|||||++||+||+++|++||+|+|+.+.+.+. . ..+.++.+.+++........++++++.+++.++++
T Consensus 14 ~l~vVG~GpGd~~lLTlrA~~~L~~ADvI~~~~~~~~l~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~ 88 (268)
T 1vhv_A 14 LLTFVGLGLWDVKDISVKGLEAVREADEVYVEYYTSKLL----S-SIEEMEEFFGKRVVELERSDLEENSFRLIERAKSK 88 (268)
T ss_dssp EEEEEECBSSSGGGSBHHHHHHHHHCSEEEEECSSCCCS----S-CHHHHHHHHTSCCEEECHHHHTTTHHHHHHHHTTS
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcCCEEEECCchHhhh----c-cHHHHHHHhCCCccccchhHHHHHHHHHHHHhCCC
Confidence 589999999999999999999999999999988654431 0 22335555555443322344566677788777668
Q ss_pred CEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHHhhhc
Q 023387 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRS 159 (283)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~ 159 (283)
+||+|++|||++|+++.++++.+.+.+++++|||||||++++ |++|+||++++..+++.+ +.|.+..+.+..+..
T Consensus 89 ~Va~L~~GDP~iy~~~~~l~~~~~~~gi~vevIPGiSs~~aa~a~~G~pl~~~~~~~sv~~----~~~~~~~~~~~~~l~ 164 (268)
T 1vhv_A 89 SVVLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVCGLTGLHNYRFGKSATVSW----HRSQTPVNVIKANRS 164 (268)
T ss_dssp EEEEEESBCTTSSSHHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHCCCGGGBCCCEEECS----SCCSHHHHHHHHHHH
T ss_pred CEEEEeCCCCcccCcHHHHHHHHHHCCCcEEEECCccHHHHHHHHcCCCcccCcceEEEEe----cCCCchHHHHHHHhc
Confidence 999999999999999999999998889999999999999976 889999999888888853 344433455554444
Q ss_pred cCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEEehh
Q 023387 160 LGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAGTMR 239 (283)
Q Consensus 160 ~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~tl~ 239 (283)
...+|++++|.. +.+|++.++++.|.++++ +++ ++++++++++|+++|++++++++
T Consensus 165 ~~~~tlvl~d~~------------------~~~~~~~~~~~~L~~l~~-----~~~-~~~v~v~~~l~~~~E~i~~~tl~ 220 (268)
T 1vhv_A 165 IDAHTLLFLDLH------------------PEPMTIGHAVENLIAEDA-----QMK-DLYAVGIARAGSGEEVVKCDRLE 220 (268)
T ss_dssp TTCBEEEEECCS------------------SSCCCHHHHHHHHHHHCG-----GGG-GSEEEEEESTTSSSCEEEEEEGG
T ss_pred cCCCeEEEEcCc------------------hhhcCHHHHHHHHHHHHh-----cCC-CcEEEEEEcCCCCceEEEEEEHH
Confidence 556788876642 126889888888777432 344 89999999999999999999999
Q ss_pred chhhhhcCCCceEEEEeCC-CChhHHHHHhhccCCC
Q 023387 240 LLQMVDFGAPLHCLVIVGE-THPVEEEMLDFYRLTD 274 (283)
Q Consensus 240 el~~~~~~~~~~sliI~~~-~~~~~~~~~~~~~~~~ 274 (283)
++.+..+...+.+++|+++ ++.+|+++|+||....
T Consensus 221 el~~~~~~~~~~~liI~~~~~~~~e~~~l~~~~~~~ 256 (268)
T 1vhv_A 221 NLKKIDFGKPLHVMVVLAKTLHFMEFECLREFADAP 256 (268)
T ss_dssp GGGGSCCCSSCEEEEECCSSCCHHHHHHHHHHSCCC
T ss_pred HHHHhhcCCCCeEEEEECCcCCHHHHHHHHHHhcCc
Confidence 9987654344445677775 8999999999998765
No 4
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=100.00 E-value=1.5e-40 Score=298.46 Aligned_cols=251 Identities=28% Similarity=0.341 Sum_probs=192.6
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCCccccchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~i~~~~~~ 79 (283)
|||+||+| |||++||++|+++|++||+|+++.+..-- ...+++.+..+. .+++...+++..+++.+.|++.+++
T Consensus 9 ~l~lVG~G-Gd~~lLTl~A~~~L~~ADvV~~~~~~~~~----~s~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~~g 83 (294)
T 1wde_A 9 TLLLVGWG-YAPGMQTLEALDAVRRADVVYVESYTMPG----SSWLYKSVVEAAGEARVVEASRRDLEERSREIVSRALD 83 (294)
T ss_dssp EEEEEECB-SSTTCCCHHHHHHHHHCSEEEEECSSSTT----CHHHHHHHHHHHTSSSEEECCHHHHHTSHHHHTCCSSC
T ss_pred EEEEEECC-CChHHhhHHHHHHHHhCCEEEEecccccc----cccchHHHHHhccCCeEEecChHHHHHHHHHHHHHhCC
Confidence 59999999 99999999999999999999998754100 011111122222 2344433445566667777776667
Q ss_pred CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHHhhh
Q 023387 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNR 158 (283)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~~~ 158 (283)
++||+|++|||++|+++.++++.+.+.|++++|||||||++++ |++|+||+++++++++++.+.++.|.+.++.+..+.
T Consensus 84 ~~Vv~L~~GDP~v~g~~~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~v~~~~~~~~p~~~~~~l~~~l 163 (294)
T 1wde_A 84 AVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNL 163 (294)
T ss_dssp CEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHTCCGGGEEEEEEECCGGGCCCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCccccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHhCCCccCCCceEEEEeccCcccCCChHHHHHHHH
Confidence 8999999999999999999999999889999999999999976 889999999888999888777777655566676666
Q ss_pred ccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHc-----CC-CCCCCCceEEEEeccCCCCeE
Q 023387 159 SLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQ-----GE-SVYNEDTLCVGFARLGSEDQM 232 (283)
Q Consensus 159 ~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~-----g~-~~~~~~~~v~v~e~lg~~~E~ 232 (283)
..+.+|+++++... ...+|++.++++.|.++. +. +. +.+++++++++++++|+++|+
T Consensus 164 ~~~~~tlvl~~~~~----------------~~~~m~~~~i~~~L~~l~-~~l~~~~~~~G~~~~~~~v~v~~~lg~~~E~ 226 (294)
T 1wde_A 164 CAGLHTTALLDVDE----------------RGVQLSPGQGVSLLLEAD-REYAREAGAPALLARLPSVLVEAGAGGGHRV 226 (294)
T ss_dssp HHTCEEEEEECBCT----------------TSCBCCHHHHHHHHHHHH-HHHHHHHTSCCCGGGSCEEEEECCGGGCCEE
T ss_pred hcCCCeEEEEeccc----------------ccccccHHHHHHHHHHHH-HhhhccccccCcCCCCCEEEEEEeCCCCCcE
Confidence 66678888876532 135788999999888532 23 11 124678999999999999999
Q ss_pred EEEEehhchhhhhcCCCceEEEEeCCCChhHHHHHhhccCC
Q 023387 233 IVAGTMRLLQMVDFGAPLHCLVIVGETHPVEEEMLDFYRLT 273 (283)
Q Consensus 233 i~~~tl~el~~~~~~~~~~sliI~~~~~~~~~~~~~~~~~~ 273 (283)
|+.++++++.+.++...+.+++|+++.+..|+++|.+|...
T Consensus 227 i~~~tl~el~~~~~~~~~~~iiI~g~~~~~e~~~l~~~~~~ 267 (294)
T 1wde_A 227 LYWSSLERLSTADVEGGVYSIVIPARLSGVEEWLLAAASGQ 267 (294)
T ss_dssp EEESCHHHHHTCCCCCCCCEEEECSSCCHHHHHHHHHHTTC
T ss_pred EEEeeHHHHhhcccCCCCEEEEEeCCCchHHHHHHHHHhcc
Confidence 99999999987654334444445589999999999999865
No 5
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=100.00 E-value=6.6e-36 Score=262.79 Aligned_cols=221 Identities=19% Similarity=0.169 Sum_probs=152.0
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCCccccchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~i~~~~~~ 79 (283)
+||+||+||||+++||++|+++|++||+|++++... .... ++.+. ++++.......++++.+.+.+.+++
T Consensus 6 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~------~~~~---l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 76 (253)
T 4e16_A 6 KVHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLV------NPEL---LEYCKEDCQIHNSAHMDLQEIIDVMREGIEN 76 (253)
T ss_dssp CEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTS------CGGG---GGGSCTTCEEEEGGGCCHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEeCCCC------CHHH---HhhcCCCCEEEecCCCCHHHHHHHHHHHHHC
Confidence 599999999999999999999999999999965311 1112 22221 2222221123456777888887765
Q ss_pred -CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCC-chhHHHHh
Q 023387 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPG-SFYEKIKR 156 (283)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~-~~~~~l~~ 156 (283)
++|++|++|||++|+++.++++.+.+.|+++++||||||++++ |++|+||++.+.+.++.+.+.|++.. ...+.+.
T Consensus 77 g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~~~~~~~~~g~~~~~~~~~~~- 155 (253)
T 4e16_A 77 NKSVVRLQTGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGAASSLGVEYTVPEISQSVIITRMEGRTPVPEKESIQ- 155 (253)
T ss_dssp TCCEEEEESBCTTTTCCHHHHHHHHHHHTCCEEEECCCCHHHHHHHHHTCCSCBTTTBSCEEEEEC---CCCCGGGSHH-
T ss_pred CCcEEEEeCCCCccccCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHhCCCcccCCccceEEEEeccCCCCcchHHHHH-
Confidence 8999999999999999999999998889999999999999976 88999998866555554444454421 1011111
Q ss_pred hhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEE
Q 023387 157 NRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAG 236 (283)
Q Consensus 157 ~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~ 236 (283)
.......++++++. ...+.++++.|.+ . ++++++++++++++|+++|+|+++
T Consensus 156 ~l~~~~~t~vl~~~---------------------~~~~~~i~~~L~~----~---g~~~~~~v~v~~~l~~~~E~i~~~ 207 (253)
T 4e16_A 156 SYAKHQTSMVIFLS---------------------VQEIEKVVSKLLE----G---GYPKDTPIAVIYKATWADEKIVKG 207 (253)
T ss_dssp HHHTTCSEEEEEEC---------------------STTHHHHHHHHHH----T---TCCTTCEEEEEESTTSTTCEEEEE
T ss_pred HHhcCCCeEEEECc---------------------HHHHHHHHHHHHh----c---CCCCCCeEEEEEeCCCCCcEEEEE
Confidence 11122234444321 1134445544444 4 456789999999999999999999
Q ss_pred ehhchhhh--hcCCCceEEEEeCCC
Q 023387 237 TMRLLQMV--DFGAPLHCLVIVGET 259 (283)
Q Consensus 237 tl~el~~~--~~~~~~~sliI~~~~ 259 (283)
|++++.+. +......+++|+|+.
T Consensus 208 tl~el~~~~~~~~~~~~~vivIg~~ 232 (253)
T 4e16_A 208 TLSDIAVKVKENNINKTALIMVGRF 232 (253)
T ss_dssp ETTTHHHHHHHTCCCSCEEEEESGG
T ss_pred EHHHHHHHHHhCCCCCCEEEEECcc
Confidence 99999763 112455688888853
No 6
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=100.00 E-value=6.9e-36 Score=267.04 Aligned_cols=221 Identities=22% Similarity=0.249 Sum_probs=156.8
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCCccccchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~i~~~~~~ 79 (283)
|||+||+|||||++||++|+++|++||+|+|++.. ++... ++.+. ++++.......++++.+.+.+.+++
T Consensus 22 ~l~lVG~GpGd~~~LT~~A~~~L~~AdvV~~~~~~------~~~~l---l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 92 (285)
T 1cbf_A 22 KLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSL------VSQDL---IAKSKPGAEVLKTAGMHLEEMVGTMLDRMRE 92 (285)
T ss_dssp EEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTT------SCHHH---HTTSCTTCEEEECTTCCHHHHHHHHHHHHTT
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEeCCC------CCHHH---HHhcCCCCEEEecCCCCHHHHHHHHHHHHHC
Confidence 49999999999999999999999999999986531 11111 22221 2333222223456777888887765
Q ss_pred -CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCC-CchhHHHHh
Q 023387 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRP-GSFYEKIKR 156 (283)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~-~~~~~~l~~ 156 (283)
++||+|++|||++|+++.++++.+.+.|+++++||||||++++ |++|+||+..+...++.+.+.+++. ....+.+.
T Consensus 93 g~~Vv~L~~GDP~i~g~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~pl~~~~~~~~~~~~~~~g~~~~~~~~~l~- 171 (285)
T 1cbf_A 93 GKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAAAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLT- 171 (285)
T ss_dssp TCCEEEEESBCTTTTCCCHHHHHHHHHTTCEEEEECCCCHHHHHHHHTTCCSCBTTTBCCEEEEECCSSSCCCGGGCHH-
T ss_pred CCeEEEEeCCCccccccHHHHHHHHHHCCCcEEEECCchHHHHHHHHcCCCcccCCcceeEEEeccCCCCCcchHHHHH-
Confidence 8999999999999999999999999889999999999999976 8899999987765555554445542 11111111
Q ss_pred hhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEE
Q 023387 157 NRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAG 236 (283)
Q Consensus 157 ~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~ 236 (283)
+...+.+++++++. ...+.++++.|.+ . ++++++++++++++|+++|+|+++
T Consensus 172 ~l~~~~~tlvl~~~---------------------~~~~~~i~~~L~~----~---g~~~~~~v~v~~~lg~~~E~i~~~ 223 (285)
T 1cbf_A 172 DLAKHKCTIALFLS---------------------STLTKKVMKEFIN----A---GWSEDTPVVVVYKATWPDEKIVRT 223 (285)
T ss_dssp HHHTTCSEEEEESC---------------------TTCHHHHHHHHHH----T---TCCTTCEEEEEESTTSTTCEEEEE
T ss_pred HHhcCCCeEEEECc---------------------HHHHHHHHHHHHh----c---CCCCCCeEEEEEECCcCCcEEEEe
Confidence 11223345554321 1134455555444 3 466789999999999999999999
Q ss_pred ehhchhhh--hcCCCceEEEEeCCC
Q 023387 237 TMRLLQMV--DFGAPLHCLVIVGET 259 (283)
Q Consensus 237 tl~el~~~--~~~~~~~sliI~~~~ 259 (283)
+++++.+. +...++++++|+++.
T Consensus 224 tl~el~~~~~~~~~~~~~viiig~~ 248 (285)
T 1cbf_A 224 TVKDLDDAMRTNGIRKQAMILAGWA 248 (285)
T ss_dssp EGGGHHHHHHHTTCCSSEEEEESGG
T ss_pred cHHHHHHHHHhcCCCCcEEEEEchH
Confidence 99999753 223567888888853
No 7
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=100.00 E-value=1.2e-35 Score=264.72 Aligned_cols=230 Identities=16% Similarity=0.197 Sum_probs=161.1
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHH-----HhCCCccccchhhHHHHHHHHHH
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEK-----LYGKPIALADREMVEEKADKILS 75 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~-----~~~k~~~~~~~~~~~~~~~~i~~ 75 (283)
|||+||+|||||++||+||+++|++||+|+|+...+ .+.++.++. +.++.... ....++++.+.+.+
T Consensus 16 ~l~lVG~GpGd~~lLTl~A~~~L~~ADvV~~d~~~~-------~~ll~~~~~~~~~~~~~k~~~~-~~~~~~~i~~~l~~ 87 (280)
T 1s4d_A 16 SVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVN-------EDCLKLARPGAVLEFAGKRGGK-PSPKQRDISLRLVE 87 (280)
T ss_dssp CEEEEECBSSCTTSSBHHHHHHHHHCSEEEECSCSC-------TTGGGGSSTTCCEEECSCCC---CCCCHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEcCCCC-------HHHHHhccCCCEEEeccccccc-cccCHHHHHHHHHH
Confidence 699999999999999999999999999999965421 122111211 01121111 12346677788888
Q ss_pred hccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCC-----
Q 023387 76 ESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPG----- 148 (283)
Q Consensus 76 ~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~----- 148 (283)
.+++ ++|++|++|||++|+++.++++.+.+.|+++++||||||++++ |++|+||++.+....+.+.+.|.++.
T Consensus 88 ~~~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~~~~~~~~~~~~~~~~~ 167 (280)
T 1s4d_A 88 LARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFLTGHDSSGLVPDR 167 (280)
T ss_dssp HHHTTCCEEEEESBCTTSSSSHHHHHHHHHTTTCCEEEECCCCTTTHHHHHTTCCSCCTTTCSEEEEEECCC-------C
T ss_pred HHhCCCeEEEEcCCCCccccCHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCccCCCcccEEEEECCcCCccccccc
Confidence 7765 8999999999999999999999999889999999999999976 88999999877644554455665432
Q ss_pred chhHHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCC
Q 023387 149 SFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGS 228 (283)
Q Consensus 149 ~~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~ 228 (283)
..++.+. .+.+|+++++.. ..+.++++.|.+ . ++++++++++++++|+
T Consensus 168 ~~~~~l~----~~~~tlVl~~~~---------------------~~~~~i~~~L~~----~---G~~~~~~v~v~~~l~~ 215 (280)
T 1s4d_A 168 INWQGIA----SGSPVIVMYMAM---------------------KHIGAITANLIA----G---GRSPDEPVAFVCNAAT 215 (280)
T ss_dssp CCHHHHH----TTCSEEEEESCS---------------------TTHHHHHHHHHH----T---TCCTTCEEEEEESTTS
T ss_pred ccHHHHh----CCCCeEEEECch---------------------hhHHHHHHHHHh----c---CCCCCCEEEEEEeCCC
Confidence 1233332 234566655421 134455555544 4 4677899999999999
Q ss_pred CCeEEEEEehhchhhh--hcCCCceEEEEeCCCChhHHHHHhhcc
Q 023387 229 EDQMIVAGTMRLLQMV--DFGAPLHCLVIVGETHPVEEEMLDFYR 271 (283)
Q Consensus 229 ~~E~i~~~tl~el~~~--~~~~~~~sliI~~~~~~~~~~~~~~~~ 271 (283)
++|+++.++++++.+. +......+++|+|+.... ++.+.||.
T Consensus 216 ~~E~i~~~tl~el~~~~~~~~~~~~~vivig~~~~~-~~~~~~~~ 259 (280)
T 1s4d_A 216 PQQAVLETTLARAEADVAAAGLEPPAIVVVGEVVRL-RAALDWIG 259 (280)
T ss_dssp TTCEEEEEETTTHHHHHHHHTCCSSEEEEESGGGGG-HHHHCHHH
T ss_pred CCeEEEEecHHHHHHHHHhcCCCCCEEEEECchhch-hhhccchh
Confidence 9999999999999764 111344578888865443 55666663
No 8
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=100.00 E-value=1.7e-35 Score=261.62 Aligned_cols=216 Identities=21% Similarity=0.208 Sum_probs=153.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCCccccchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~i~~~~~~ 79 (283)
|||+||+|||||++||++|+++|++||+|+|++.. ++... ++.+. +++++......++++++.+.+.+++
T Consensus 5 ~l~iVG~GpG~~~lLT~~A~~~L~~AdvV~~~~~~------~~~~l---l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 75 (264)
T 3ndc_A 5 TVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSL------VPEAL---LAHCPPGAKIVNTAPMSLDAIIDTIAEAHAA 75 (264)
T ss_dssp CEEEEECBSSCGGGSBHHHHHHHHHCSEEEECSTT------SCGGG---GGGSCTTCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCChHHHHHHHHHHHHcCCEEEEECCC------CCHHH---HhhcCCCCEEEecCCCCHHHHHHHHHHHHHC
Confidence 59999999999999999999999999999986531 12222 22221 2333221223456777888877754
Q ss_pred -CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCC-----chhH
Q 023387 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPG-----SFYE 152 (283)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~-----~~~~ 152 (283)
++||+|++|||++|+++.++++.+.+.|++++|+|||||++++ |++|+||++.+.+.++.+.+.|.+.. ..++
T Consensus 76 G~~Va~L~~GDP~iyg~~~~l~~~l~~~gi~veviPGiSs~~aaaA~lG~plt~~~~~~~~~~~s~~~~~~~~~~~~~l~ 155 (264)
T 3ndc_A 76 GQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILTRTSGRASAMPAGETLE 155 (264)
T ss_dssp TCCEEEEESBCTTSSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHTCCSCBTTTBCCEEEEECCTTTCCCCTTCCHH
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHhCCCCEEEeCCHHHHHHHHHHhCCCccCCCceeEEEEEeccCCCCCcchHHHHH
Confidence 8999999999999999999999999999999999999999976 88999999877666665555555421 1122
Q ss_pred HHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeE
Q 023387 153 KIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQM 232 (283)
Q Consensus 153 ~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~ 232 (283)
.+.. ...+++++.. ...+.++++.|.+ . +++++++++++++|+++|+
T Consensus 156 ~l~~----~~~tlvl~~~---------------------~~~~~~i~~~L~~----~----~~~~~~v~v~~~l~~~~E~ 202 (264)
T 3ndc_A 156 NFAR----TGAVLAIHLS---------------------VHVLDEVVQKLVP----H----YGEDCPVAIVWRASWPDQR 202 (264)
T ss_dssp HHHT----TTCEEEEESC---------------------GGGHHHHHHHHHH----H----HCTTCEEEEEESTTSTTCE
T ss_pred HHhc----CCCcEEEecC---------------------HHHHHHHHHHHHh----h----CCCCCEEEEEEECCCCCeE
Confidence 2211 1123333211 1134445554444 2 3458999999999999999
Q ss_pred EEEEehhchhhhh-cCCCceEEEEeCC
Q 023387 233 IVAGTMRLLQMVD-FGAPLHCLVIVGE 258 (283)
Q Consensus 233 i~~~tl~el~~~~-~~~~~~sliI~~~ 258 (283)
|++++++|+.+.. ....+.+++|+|+
T Consensus 203 i~~~tl~el~~~~~~~~~~~~viivg~ 229 (264)
T 3ndc_A 203 VVRATLATLQTSLGAELERTALILVGR 229 (264)
T ss_dssp EEEEEGGGSCGGGSSSSCCCEEEEESG
T ss_pred EEEEEHHHHHHHHhccCCccEEEEEcC
Confidence 9999999998631 2256778898884
No 9
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=100.00 E-value=1.3e-35 Score=258.14 Aligned_cols=219 Identities=21% Similarity=0.227 Sum_probs=154.2
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccc------cchhhHHHHHHHHH
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIAL------ADREMVEEKADKIL 74 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~------~~~~~~~~~~~~i~ 74 (283)
|||+||+|||||++||++|+++|++||+|+++...+ .+. ++.+ ++++.. .....++++.+.+.
T Consensus 4 ~l~vVG~GpG~~~~LT~~A~~~L~~advv~~~~~~~-------~~~---l~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~ 72 (235)
T 1ve2_A 4 KVYLVGAGFGGPEHLTLKALRVLEVAEVVLHDRLVH-------PGV---LALA-KGELVPVGKEGYGGKTPQEAITARLI 72 (235)
T ss_dssp EEEEEECBSSSGGGSBHHHHHHHHHCSEEEECTTSC-------HHH---HTTC-CSEEEEC-------CCCHHHHHHHHH
T ss_pred EEEEEeeCCCCHHHHHHHHHHHHHhCCEEEEeCCCC-------HHH---HHhh-CcEEEEecccCcccccCHHHHHHHHH
Confidence 499999999999999999999999999999865321 111 1111 222211 01124566777788
Q ss_pred HhccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhH
Q 023387 75 SESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYE 152 (283)
Q Consensus 75 ~~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~ 152 (283)
+.+++ ++|++|++|||++|+++.++++.+.+.|++++++|||||++++ |++|+||++++.+.++.+.+.|. +.+
T Consensus 73 ~~~~~g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~~~s~~~-~~~--- 148 (235)
T 1ve2_A 73 ALAREGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALSALGLPLTHRGLARSFAVATGHD-PAL--- 148 (235)
T ss_dssp HHHHTTCEEEEEESBCTTSSTTHHHHHHHHHHHTCCEEEECCCCTTHHHHHHTTCCSCBTTTBSCEEEEESSC-TTS---
T ss_pred HHHHcCCeEEEEcCCCCCcccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHcCCCcccCCcccEEEEeCCCC-chh---
Confidence 77765 8999999999999999999999998889999999999999976 88999999887544444445554 421
Q ss_pred HHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeE
Q 023387 153 KIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQM 232 (283)
Q Consensus 153 ~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~ 232 (283)
+.. +.++++++ .......++.+.+.+ ++++++++++++++|+++|+
T Consensus 149 ----~l~-~~~t~vl~-------------------------~~~~~~~~i~~~L~~----g~~~~~~v~v~~~l~~~~E~ 194 (235)
T 1ve2_A 149 ----PLP-RADTLVLL-------------------------MPLHTLGGLKERLLE----RFPPETPLALLARVGWPGEA 194 (235)
T ss_dssp ----CCC-BCSEEEEE-------------------------C------CHHHHHHT----TSCTTSEEEEEESTTSTTCE
T ss_pred ----hhc-cCCeEEEE-------------------------cChhhHHHHHHHHHh----cCCCCCeEEEEEECCcCCeE
Confidence 111 23444443 222334455555543 46678999999999999999
Q ss_pred EEEEehhchhhh--hcCCCceEEEEeCCCChhHHHHHhhcc
Q 023387 233 IVAGTMRLLQMV--DFGAPLHCLVIVGETHPVEEEMLDFYR 271 (283)
Q Consensus 233 i~~~tl~el~~~--~~~~~~~sliI~~~~~~~~~~~~~~~~ 271 (283)
|++++++++.+. ++ ...+++++|+.... ++.+.||+
T Consensus 195 i~~~~l~el~~~~~~~--~~~~vivig~~~~~-~~~~~~~~ 232 (235)
T 1ve2_A 195 VRLGRVEDLPGLGEGL--PSPALLVVGKVVGL-YGELLPKD 232 (235)
T ss_dssp EEEEEGGGTTTTTTTC--CSSEEEEESGGGGG-HHHHSSCC
T ss_pred EEEEEHHHHHHHhcCC--CCCEEEEEChHhhh-hhhccccc
Confidence 999999999765 43 44577778865443 56665553
No 10
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=100.00 E-value=3.4e-35 Score=263.47 Aligned_cols=218 Identities=18% Similarity=0.235 Sum_probs=154.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHH----H-hCCCccccchhhHHHHHHHHHH
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEK----L-YGKPIALADREMVEEKADKILS 75 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~----~-~~k~~~~~~~~~~~~~~~~i~~ 75 (283)
|||+||+|||||++||+||+++|++||+|+|+...+ .+.++.++. . .++.... ....++++.+.+.+
T Consensus 26 ~l~lVG~GpGdp~lLTlrA~~~L~~ADvV~~d~~~~-------~~il~~~~~~~~~i~~~k~~~~-~~~~~~~i~~~l~~ 97 (294)
T 2ybo_A 26 SVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVA-------RELIALLPESCQRIYVGKRCGH-HSLPQEEINELLVR 97 (294)
T ss_dssp CEEEEEEESSCGGGSCHHHHHHHTTCSEEEECTTSC-------HHHHHHSCTTSEEEECC---------CHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHcCCEEEEcCCCC-------HHHHHhcccCCeEEeccccccc-ccCCHHHHHHHHHH
Confidence 599999999999999999999999999999965321 112111111 0 0111111 12245667777887
Q ss_pred hccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCc----
Q 023387 76 ESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGS---- 149 (283)
Q Consensus 76 ~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~---- 149 (283)
.+++ ++|++|++|||++|+++.++++.+.+.|+++++||||||++++ |++|+||++++.+.++.+.+.|.++.+
T Consensus 98 ~~~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~vevIPGiSS~~aa~a~~Giplt~~~~~~~~~~~sg~~~~~~~~~~ 177 (294)
T 2ybo_A 98 LARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLDL 177 (294)
T ss_dssp HHHTTCCEEEEEEBCTTSSSSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCSCBTTTBSCEEEEECSCCTTSSCCC
T ss_pred HHHCCCeEEEEcCCCCCccCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHcCCCcccCCCCcEEEEEcccCCcccchhh
Confidence 7765 8999999999999999999999999999999999999999976 889999998876555555556654321
Q ss_pred hhHHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCC
Q 023387 150 FYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSE 229 (283)
Q Consensus 150 ~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~ 229 (283)
.++.+ ..+.+|+++++.. ..+.++++.|.+ . ++++++++++++++|++
T Consensus 178 ~~~~l----~~~~~tlVl~~~~---------------------~~~~~i~~~L~~----~---G~~~~~~v~v~~~l~~~ 225 (294)
T 2ybo_A 178 DWAGL----ARGKQTLVFYMGL---------------------GNLAEIAARLVE----H---GLASDTPAALVSQGTQA 225 (294)
T ss_dssp CHHHH----TSSSCEEEEESCG---------------------GGHHHHHHHHHH----T---TCCTTCEEEEEESTTST
T ss_pred HHHHH----hcCCCeEEEECcH---------------------HHHHHHHHHHHh----c---CCCCCCEEEEEEeCCCC
Confidence 23332 2234555554321 134445554444 4 36778999999999999
Q ss_pred CeEEEEEehhchhhh--hcCCCceEEEEeCC
Q 023387 230 DQMIVAGTMRLLQMV--DFGAPLHCLVIVGE 258 (283)
Q Consensus 230 ~E~i~~~tl~el~~~--~~~~~~~sliI~~~ 258 (283)
+|+|+.++++++.+. +....+.+++|+|+
T Consensus 226 ~E~i~~~tl~el~~~~~~~~~~~~~vivIg~ 256 (294)
T 2ybo_A 226 GQQVTRGALAELPALARRYQLKPPTLIVVGQ 256 (294)
T ss_dssp TCEEEEEEGGGHHHHHHHTTCCSSEEEEEST
T ss_pred ceEEEEeeHHHHHHHHHhcCCCCCEEEEECc
Confidence 999999999999754 11246678888885
No 11
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=100.00 E-value=1e-34 Score=253.14 Aligned_cols=215 Identities=20% Similarity=0.164 Sum_probs=148.5
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhH-HH--hCCCccccchhhHHHHHHHHHHhc
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLE-KL--YGKPIALADREMVEEKADKILSES 77 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~-~~--~~k~~~~~~~~~~~~~~~~i~~~~ 77 (283)
|||+||+|||||++||+||+++|++||+|+|+...+ .+.++.+. +. .+++.. . ...++++.+.+.+.+
T Consensus 2 ~l~iVG~GpG~~~~LT~~A~~~L~~advI~~~~~~~-------~~~l~~~~~~~i~~~~~~~-~-~~~~~~~~~~i~~~~ 72 (239)
T 1va0_A 2 RVYLVGAGPGDPELLTLKAYRLLKEAPVVLYDRLVD-------ERVLALAPGEKVYVGKEEG-E-SEKQEEIHRLLLRHA 72 (239)
T ss_dssp EEEEEECBSSCGGGSBHHHHHHHHHCSEEEECTTSC-------HHHHTTCCSEEEECCCCC------CHHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEcCCCC-------HHHHhhccccEEecccccc-c-ccCHHHHHHHHHHHH
Confidence 699999999999999999999999999999965321 11211111 00 122211 1 335667778888877
Q ss_pred cC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHHHHcCCccccCCceeEEecccCCCCCCchhHHHHh
Q 023387 78 QE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKR 156 (283)
Q Consensus 78 ~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~ 156 (283)
++ ++|++|++|||++|+++.++++.+.+.|++++++|||||++++ |+||++++.+..+.+.+.|.++.. .....
T Consensus 73 ~~g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa---g~pl~~~~~~~~~~~~~~~~~~~~--~~~~~ 147 (239)
T 1va0_A 73 RAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLAS---GLPLTHRGLAHGFAAVSGVLEGGG--YPDLR 147 (239)
T ss_dssp HTSSEEEEEESBCTTSSSSHHHHHHHHHHTTCCEEEECCCCGGGTT---CCCSSBTTTBSEEEEEESSCGGGC--CCCCT
T ss_pred HCCCcEEEEeCCCCccccCHHHHHHHHHHCCCcEEEECCcchHhhc---CCCcccCCccceEEEEeccCCccc--hhhHH
Confidence 65 8999999999999999999999999889999999999999988 999998865334433444543211 00111
Q ss_pred hhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEE
Q 023387 157 NRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAG 236 (283)
Q Consensus 157 ~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~ 236 (283)
....+ +++++++.. ..+.++++.|.+ . ++++++++++++++|+++|+|+.+
T Consensus 148 ~l~~~-~t~vl~~~~---------------------~~~~~i~~~L~~----~---g~~~~~~v~v~~~l~~~~E~i~~~ 198 (239)
T 1va0_A 148 PFARV-PTLVVLMGV---------------------GRRVWIAKELLR----L---GRDPREPTLFVERASTPKERRVHA 198 (239)
T ss_dssp TTTTC-SSEEEESCS---------------------TTHHHHHHHHHH----T---TCCTTCEEEEEETTTSTTCEEEEE
T ss_pred HhcCC-CcEEEEccH---------------------HHHHHHHHHHHh----c---CCCCCCcEEEEEECCCCCcEEEEe
Confidence 22233 555554321 134445544444 4 367789999999999999999999
Q ss_pred ehhchhhhhcCCCceEEEEeCC
Q 023387 237 TMRLLQMVDFGAPLHCLVIVGE 258 (283)
Q Consensus 237 tl~el~~~~~~~~~~sliI~~~ 258 (283)
+++++.+.+......+++++|+
T Consensus 199 ~l~el~~~~~~~~~~~vivig~ 220 (239)
T 1va0_A 199 RLEEVAEGKVEVRPPALWILGE 220 (239)
T ss_dssp EHHHHHTTCCCCCSSEEEEESG
T ss_pred EHHHHHhhhcCCCCCEEEEEch
Confidence 9999976421234557777774
No 12
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=100.00 E-value=2.2e-34 Score=252.79 Aligned_cols=215 Identities=16% Similarity=0.161 Sum_probs=143.2
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccc-cchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIAL-ADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~~i~~~~~~ 79 (283)
|+|+||+|||||++||+||+++|++||+|++.+ +.++. +....++++.. ...+..++ ++.+++.+++
T Consensus 10 ~~~~vG~GPGd~~lLT~rA~~~L~~AdvI~g~d--~~~~~---------~~~~~~~~~~~~~~~~ei~~-~~~li~~~~~ 77 (251)
T 3nut_A 10 WVTVAGLGPGREDLVTPEVTAALAEATDIVGYI--PYVAR---------IAPREGLTLHPTDNRVELDR-ATHALEMAAE 77 (251)
T ss_dssp EEEEEECBSSCGGGSCHHHHHHHHHCSEEEECG--GGGTT---------CCCCTTCEEEECCSSCCHHH-HHHHHHHHHT
T ss_pred cEEEEEECCCCHHHHHHHHHHHHHhCCEEEEcC--ccccc---------ccccCCCEEeecCCHHHHHH-HHHHHHHHHC
Confidence 489999999999999999999999999999654 23210 11112333221 11222222 2456666655
Q ss_pred -CCEEEEecCCCCCCccHHHHHHHHHh----CCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHH
Q 023387 80 -SNVAFLVVGDPFGATTHTDLVVRAKK----LGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEK 153 (283)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~l~~----~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~ 153 (283)
++||+|++|||++||++.++++.+.+ .|++++|||||||++++ |++|+||++....+++ +.+... ++.
T Consensus 78 G~~Vv~L~~GDP~i~g~g~~l~~~l~~~~~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~s~-----~~~~~~-~~~ 151 (251)
T 3nut_A 78 GRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDFCAINL-----SDNLKP-FEI 151 (251)
T ss_dssp TCEEEEEESBCTTSSSHHHHHHHHHHHCGGGTTCCEEEECCCCHHHHHHHHHEETTSSSEEEEES-----CCTTSC-HHH
T ss_pred CCeEEEEeCCCcccccCHHHHHHHHHhhcccCCCcEEEECCHHHHHHHHHHhCCCccCCeEEEEe-----cCCCCC-hHH
Confidence 89999999999999999999999987 79999999999999976 8899999764333332 222111 333
Q ss_pred HHhhh---ccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCC
Q 023387 154 IKRNR---SLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSED 230 (283)
Q Consensus 154 l~~~~---~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~ 230 (283)
+.... ..+..++++++.. .-..+.++. ++.+.+.+ ++++++++++++++|+++
T Consensus 152 ~~~~l~~l~~~~~tlvl~~~~-------------------~~~~p~~i~-~~~~ll~~----g~~~~~~v~v~~~l~~~~ 207 (251)
T 3nut_A 152 LEKRLRHAARGDFAMAFYNPR-------------------SKSRPHQFT-RVLEILRE----ECEPGRLILFARAVTTPE 207 (251)
T ss_dssp HHHHHHHHHHTTCEEEEESCS-------------------CSSSTTHHH-HHHHHHHH----HSCTTCEEEEEESTTSTT
T ss_pred HHHHHHHHhCCCCEEEEECCc-------------------cccchhHHH-HHHHHHHh----CCCCCCEEEEEeeCCCCC
Confidence 32211 1122234433211 001122332 22333332 456799999999999999
Q ss_pred eEEEEEehhchhhhhcCCCceEEEEeCCC
Q 023387 231 QMIVAGTMRLLQMVDFGAPLHCLVIVGET 259 (283)
Q Consensus 231 E~i~~~tl~el~~~~~~~~~~sliI~~~~ 259 (283)
|++++++++++.+.+ .++++++|+|+.
T Consensus 208 E~i~~~tl~~l~~~~--~~~~s~iiVg~~ 234 (251)
T 3nut_A 208 QAISVVELRDATPEM--ADMRTVVLVGNA 234 (251)
T ss_dssp CEEEEEEGGGCCGGG--CCTTEEEEECCS
T ss_pred cEEEEeEHHHHhhcC--CCCCEEEEECCc
Confidence 999999999998765 467899999854
No 13
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=100.00 E-value=2.5e-34 Score=272.45 Aligned_cols=230 Identities=21% Similarity=0.267 Sum_probs=161.6
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHH----H-hCCCccccchhhHHHHHHHHHH
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEK----L-YGKPIALADREMVEEKADKILS 75 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~----~-~~k~~~~~~~~~~~~~~~~i~~ 75 (283)
|||+||+|||||++||++|+++|++||+|+|+...+ .+.++.++. + .+|.... ....++++.+.+.+
T Consensus 217 ~l~lVG~GpGd~~lLTlrA~~~L~~ADvV~~d~~~~-------~~il~~~~~~~~~~~~~k~~~~-~~~~~~~i~~~l~~ 288 (457)
T 1pjq_A 217 EVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVS-------DDIMNLVRRDADRVFVGKRAGY-HCVPQEEINQILLR 288 (457)
T ss_dssp EEEEEECBSSCGGGSBHHHHHHHHHCSEEEECTTSC-------HHHHTTSCTTSEEEECSCC----CCCTTHHHHHHHHH
T ss_pred EEEEEeCCCCChHHccHHHHHHHHhCCEEEEeCCCC-------HHHHhhcccCCEEEeccccccc-cCCCHHHHHHHHHH
Confidence 589999999999999999999999999999975432 111111111 0 1221111 11245667777888
Q ss_pred hccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCc--hh
Q 023387 76 ESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGS--FY 151 (283)
Q Consensus 76 ~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~--~~ 151 (283)
.+++ ++|++|++|||++|+++.++++.+.+.|++++++|||||++++ |++|+||++++...++.+.+.|.++.. .+
T Consensus 289 ~~~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~v~vvPGiSs~~aa~a~~Giplt~~~~~~~~~~vsg~~~~~~~~~~ 368 (457)
T 1pjq_A 289 EAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGGELDW 368 (457)
T ss_dssp HHHTTCEEEEEESBCTTTSSSHHHHHTTTTTTTCCEEEECCCCHHHHHHHHTTCCSCCTTTCSEEEEECC------CCCH
T ss_pred HHHCCCcEEEEeCCCCCccCCHHHHHHHHHHCCCCEEEeCCHhHHHHHHHHcCCCccCCCccceEEEEeCCCCCcchhhH
Confidence 7765 8999999999999999999999998889999999999999976 889999999887666666666654311 12
Q ss_pred HHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCe
Q 023387 152 EKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQ 231 (283)
Q Consensus 152 ~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E 231 (283)
+.+ ..+.+|+++++. ...+.++++.|.+ . ++++++++++++++|+++|
T Consensus 369 ~~l----~~~~~t~Vl~~~---------------------~~~~~~i~~~L~~----~---g~~~~~~v~v~~~l~~~~E 416 (457)
T 1pjq_A 369 ENL----AAEKQTLVFYMG---------------------LNQAATIQEKLIA----F---GMQADMPVALVENGTSVKQ 416 (457)
T ss_dssp HHH----HSSSEEEEESSC---------------------SSSHHHHHHHHHH----T---TCCTTCEEEEEESTTSTTC
T ss_pred HHH----hcCCCeEEEEcc---------------------hhhHHHHHHHHHh----c---CCCCCCEEEEEEECCCCCc
Confidence 222 223456555432 1234555555554 4 4677999999999999999
Q ss_pred EEEEEehhchhhhhcCCCceEEEEeCCCChhHHHHHhhcc
Q 023387 232 MIVAGTMRLLQMVDFGAPLHCLVIVGETHPVEEEMLDFYR 271 (283)
Q Consensus 232 ~i~~~tl~el~~~~~~~~~~sliI~~~~~~~~~~~~~~~~ 271 (283)
+++.++++++.+.....++++++|+|..... ++.+.||+
T Consensus 417 ~i~~~tl~el~~~~~~~~~~~viivg~~~~~-~~~~~~~~ 455 (457)
T 1pjq_A 417 RVVHGVLTQLGELAQQVESPALIIVGRVVAL-RDKLNWFS 455 (457)
T ss_dssp EEEEEEGGGHHHHTTSCCSSEEEEESGGGGG-GGTTCCSC
T ss_pred EEEEEEHHHHHHHhcCCCCCEEEEEChhhcc-cccccccc
Confidence 9999999999764223567899999865443 45566663
No 14
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.4e-32 Score=238.31 Aligned_cols=208 Identities=19% Similarity=0.227 Sum_probs=147.0
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-----CCCcc-----c-cc----hhh
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-----GKPIA-----L-AD----REM 65 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-----~k~~~-----~-~~----~~~ 65 (283)
|||+||+|||||++||++|+++|++||+|+|+.....- ..-++++++.+. ++++. . .+ ...
T Consensus 4 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~----~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (232)
T 2qbu_A 4 KLIGVGVGPGDSELLTLRAVNVLRSVPVICAPRSSSER----ESIALSIVEDILTERRDGCRILDPVFPMTDDRDELESH 79 (232)
T ss_dssp CEEEEECBSSCGGGSBHHHHHHHHHCSEEECCBCTTCS----SCHHHHHHHHHHHHCSSCCEEECCBCCSCSSSTTHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHhCCEEEEeCCCCCc----cchHHHHHHHHhccccCCcEEEEecCCCCccHHHHHHH
Confidence 59999999999999999999999999999987642100 000222343321 22211 0 11 224
Q ss_pred HHHHHHHHHHhccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccC
Q 023387 66 VEEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTE 143 (283)
Q Consensus 66 ~~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~ 143 (283)
++++.+.+.+.+++ ++||+|++|||++|+++.++++.+.+.|++++++|||||++++ |++|+|++..+..+++.+
T Consensus 80 ~~~~~~~i~~~~~~g~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~~--- 156 (232)
T 2qbu_A 80 WDSAARMVAAELEDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAATAGRTLVEGDEILLVVP--- 156 (232)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESBCTTBSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCCBCTTCCEEEES---
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCCccchhHHHHHHHHHHCCCcEEEeCCccHHHHHHHHhCCCCCCCCceEEEEe---
Confidence 67778888887765 8999999999999999999999999999999999999999976 889999987777666642
Q ss_pred CCCCCchhHHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEE
Q 023387 144 TWRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGF 223 (283)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~ 223 (283)
.++. .+...... .++++ ++...+...++.+.+.+.|. +++++++
T Consensus 157 -~~~~----~l~~~~~~-~~t~v-------------------------l~~~~~~~~~i~~~L~~~g~-----~~~v~v~ 200 (232)
T 2qbu_A 157 -RVDD----RFERVLRD-VDACV-------------------------IMKTSRHGRRAMEVVESDPR-----GKDVVSV 200 (232)
T ss_dssp -SCCH----HHHHHGGG-CSEEE-------------------------ESSHHHHHHHHHHHHHHSSS-----CCEEEEE
T ss_pred -CCHH----HHHHHhhc-CCeEE-------------------------EEcccCcHHHHHHHHHhcCC-----CCcEEEE
Confidence 2211 22222111 13433 33344455666666665553 5799999
Q ss_pred eccCCCCeEEEEEehhchhhhhcCCCceEEEEeCC
Q 023387 224 ARLGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGE 258 (283)
Q Consensus 224 e~lg~~~E~i~~~tl~el~~~~~~~~~~sliI~~~ 258 (283)
+++|+++|++++ +++ .+ .+|++++|+++
T Consensus 201 ~~l~~~~E~i~~-~l~----~~--~~~ls~vii~~ 228 (232)
T 2qbu_A 201 ANCSMDDEVVER-GFA----SG--GGYLATTLVRF 228 (232)
T ss_dssp ESTTSTTCEEEE-SCC----SC--CCSSEEEEEEC
T ss_pred EECCCCCcEEEc-CCC----cC--CCccEEEEEec
Confidence 999999999998 465 23 46778887764
No 15
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=100.00 E-value=4.7e-34 Score=251.84 Aligned_cols=211 Identities=17% Similarity=0.208 Sum_probs=147.7
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh------CCCcc----ccch------h
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY------GKPIA----LADR------E 64 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~------~k~~~----~~~~------~ 64 (283)
|||+||+|||||++||++|+++|++||+|+|+....-. ...+++++++. ++++. ...+ .
T Consensus 6 ~l~iVG~GpG~~~~LT~~A~~~L~~advV~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
T 2e0n_A 6 SIISVSLGPGDPGLITVKALSQLREADVIYYPGTVSAS-----GAVTSVALDILKEFDLDPSKLRGMLVPMSRSRGAAEA 80 (259)
T ss_dssp EEEEEECBSSCGGGSBHHHHHHHHHCSEEEEEEEECTT-----CCEECHHHHHHTTTTCCGGGEEEEEEECC--------
T ss_pred EEEEEEeCCCChHHHHHHHHHHHHhCCEEEEecccccc-----ccHHHHHHHHHHhcCCCCCEEEeeccCCccchhhhHH
Confidence 39999999999999999999999999999998542100 00112233321 11221 0111 1
Q ss_pred hHHHHHHHHHHhccC-CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEeccc
Q 023387 65 MVEEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFT 142 (283)
Q Consensus 65 ~~~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~ 142 (283)
.|+++.+.|.+.+++ ++||+|++|||++|+++.++++.+.+.|+++++||||||++++ |++|+||+++++.+++++..
T Consensus 81 ~~~~~~~~i~~~~~~g~~Va~l~~GDP~~~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~G~pl~~~~~~~~~~~~~ 160 (259)
T 2e0n_A 81 SYAANYASMAEEVQAGRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMTPGIPAFIAAGSAAGMPLALQSDSVLVLAQI 160 (259)
T ss_dssp -CGGGHHHHHHHHHTTCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEECCCCHHHHHHHHTTCCSBCTTCCEEEECSC
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeCCCCcccccHHHHHHHHHHCCCCEEEeCChhHHHHHHHhcCCCCcCCCceEEEEcCC
Confidence 245567778877765 8999999999999999999999999989999999999999976 88999999877777765322
Q ss_pred CCCCCCchhHHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEE
Q 023387 143 ETWRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVG 222 (283)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v 222 (283)
. + .+.+...... .+++++++.. ..+.++++.|.+ .|+ ++++
T Consensus 161 ~---~---~~~l~~~~~~-~~t~vl~~~~---------------------~~~~~i~~~L~~----~g~-------~v~v 201 (259)
T 2e0n_A 161 D---E---IGELERALVT-HSTVVVMKLS---------------------TVRDELVSFLER----YAK-------PFLY 201 (259)
T ss_dssp S---S---THHHHHHHTT-CSEEEECCTT---------------------SSGGGHHHHHHH----HCS-------CEEE
T ss_pred C---C---HHHHHHHhhc-CCEEEEEccc---------------------ccHHHHHHHHHh----CCC-------CEEE
Confidence 1 1 2333332222 2566654321 123345555544 442 2999
Q ss_pred EeccCCCCeEEEEEehhchhhhhcCCCceEEEEeCC
Q 023387 223 FARLGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGE 258 (283)
Q Consensus 223 ~e~lg~~~E~i~~~tl~el~~~~~~~~~~sliI~~~ 258 (283)
++++|+++|+|+. +++++.+.+ .++++++|+++
T Consensus 202 ~~~l~~~~E~i~~-~l~el~~~~--~~~~s~iii~~ 234 (259)
T 2e0n_A 202 AEKVGMAGEFITM-EVDALRSRA--IPYFSLLVCSP 234 (259)
T ss_dssp EESTTSTTCEEEC-CTHHHHSCC--CCSSEEEEECG
T ss_pred EEECCCCCeEEEc-cHHHHhhCC--CCCcEEEEEec
Confidence 9999999999999 999997655 46788888874
No 16
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A*
Probab=100.00 E-value=7.1e-33 Score=248.11 Aligned_cols=215 Identities=20% Similarity=0.218 Sum_probs=145.2
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHH---hCCCccccchhhHHHHHHHHHHhc
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKL---YGKPIALADREMVEEKADKILSES 77 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~---~~k~~~~~~~~~~~~~~~~i~~~~ 77 (283)
|||+||+|||||++||++|+++|++||+|++.. +.+ ++++.+ .++++...+.....+..+.+++.+
T Consensus 3 ~l~lVG~GpGdp~lLT~rA~~~L~~ADvVig~~--~~l---------~ll~~~~~~~~k~~~~~~~~~e~~~~~~~l~~a 71 (295)
T 2zvb_A 3 ELFLVGMGPGDLPGLTQRAREALEGAEVVIGYS--TYV---------KLLEEMGLLAGKEVVRKGMTEELDRAEEALERA 71 (295)
T ss_dssp EEEEEECBTSSGGGSCHHHHHHHHHCSEEECCH--HHH---------HHHHHHTCCTTSEEECTTCCSHHHHHHHHHHHH
T ss_pred EEEEEECCCCChHHHHHHHHHHHHcCCEEEEeC--cHH---------HHHHHhhccCCCEEEecCCchHHHHHHHHHHHH
Confidence 499999999999999999999999999999432 221 224443 234432211111123445666666
Q ss_pred cC-CCEEEEecCCCCCCccHHHHHHHHHhC--------------------CCcEEEEcCCchHhHH-HHcCCccccCCce
Q 023387 78 QE-SNVAFLVVGDPFGATTHTDLVVRAKKL--------------------GIQVKAVHNASVMNAV-GICGLQLYRFGET 135 (283)
Q Consensus 78 ~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~--------------------~~~veiiPGISS~~a~-a~~g~pl~~~~~~ 135 (283)
++ ++||+|++|||++|+++.++.+.+.+. +++++|||||||++++ |++|+||++.
T Consensus 72 ~~G~~Va~L~~GDP~~yg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~veVIPGiSS~~aaaA~lG~plt~~--- 148 (295)
T 2zvb_A 72 LSGQRVALVSGGDPGIYGMAAPVLELMEERGLKRVDGGVGLPGRFAGEEGEVFLAVIPGVTAANAVASLLGSPLAHD--- 148 (295)
T ss_dssp HTTCEEEEEESBCTTSSSSHHHHHHHHHHTTCEECSCCCSSSEEEEETTEEEEEEEECCCCHHHHHHHTTEETTSSC---
T ss_pred HCCCcEEEEeCCCCChhhhHHHHHHHHHHhcccccccccccccccccccCCCcEEEECCHhHHHHHHHHhCCCccCC---
Confidence 55 899999999999999999999998764 4899999999999976 8899999754
Q ss_pred eEEecccCCCCCCchhHHHHhhh---ccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCC
Q 023387 136 VSIPFFTETWRPGSFYEKIKRNR---SLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGES 212 (283)
Q Consensus 136 ~~i~~~~~~~~~~~~~~~l~~~~---~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~ 212 (283)
+.++ +.|.+.. .++.+.... ..+.+++++++.... ...+...++++.|.+
T Consensus 149 ~~~i--s~~~~~~-~~~~l~~~l~~~~~~~~t~vl~~~~~~----------------~r~~~~~~i~~~L~~-------- 201 (295)
T 2zvb_A 149 TCLI--SLSDLLT-PWPLIERRLHAAGQGDFVVVLYNPQSK----------------RRDWQLRKSAEILLE-------- 201 (295)
T ss_dssp EEEE--ECCCTTS-CHHHHHHHHHHHHHTTCEEEEESCCCS----------------SCTTHHHHHHHHHTT--------
T ss_pred CeEE--eCCCCCC-CHHHHHHHHHHhhcCCcEEEEEcCCcc----------------cchhhHHHHHHHHHh--------
Confidence 2222 2232211 133333221 123345555442110 001234444444333
Q ss_pred CCCCCceEEEEeccCCCCeEEEEEehhchhhhhcCCCceEEEEeCC
Q 023387 213 VYNEDTLCVGFARLGSEDQMIVAGTMRLLQMVDFGAPLHCLVIVGE 258 (283)
Q Consensus 213 ~~~~~~~v~v~e~lg~~~E~i~~~tl~el~~~~~~~~~~sliI~~~ 258 (283)
.+++++++++++++|+++|+|+.++++++.+.. .++++++|+++
T Consensus 202 ~~~~~~~v~vv~~l~~~~E~i~~~tL~el~~~~--~~~~svviig~ 245 (295)
T 2zvb_A 202 YRPKETPAALVKSAYRKRQEVALTTLEGLREAE--AGMLTTVVIGN 245 (295)
T ss_dssp TSCTTCEEEEEESTTSTTCEEEEEETGGGGGCC--CCTTEEEEECC
T ss_pred cCCCCCEEEEEecCCCCCcEEEEeeHHHHHhcc--CCCCEEEEECC
Confidence 355689999999999999999999999998765 46788888874
No 17
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=100.00 E-value=5.3e-33 Score=242.74 Aligned_cols=213 Identities=15% Similarity=0.133 Sum_probs=135.4
Q ss_pred CEEEEecCCCCcc---hhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCC-----ccccchhhHHHHHH
Q 023387 1 MLYIIGLGLGDER---DITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKP-----IALADREMVEEKAD 71 (283)
Q Consensus 1 ml~iVG~GPG~~d---~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~-----~~~~~~~~~~~~~~ 71 (283)
|||+||+|||||+ +||+||+++|++||+|+|+++.. ..+. ++.+. +++ +.......+++.++
T Consensus 4 ~ly~VG~GpGd~~~~dLlTlrA~~~L~~aDvI~~~~~~~------~~~l---l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (242)
T 1wyz_A 4 ALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRS------ARRF---LKKVDREIDIDSLTFYPLNKHTSPEDIS 74 (242)
T ss_dssp SEEEECCCSSSSCHHHHSCTHHHHHHTTCCEEEESCHHH------HHHH---HHHHCSSSCTTCCCCEECCSSCCHHHHH
T ss_pred eEEEEecCCCCCcccCccCHHHHHHHHhCCEEEEeCCcc------hHHH---HHhcCCCCceeeeeeecccccCHHHHHH
Confidence 5999999999998 79999999999999999976421 0111 33321 222 22222233445567
Q ss_pred HHHHhccC-CCEEEEe-cCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCC
Q 023387 72 KILSESQE-SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPG 148 (283)
Q Consensus 72 ~i~~~~~~-~~V~~l~-~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~ 148 (283)
.+++.+++ ++||+|+ +|||++|+++.++++.+.+.|+++++||||||++++ |++|+|++.+ .+. ++.|.
T Consensus 75 ~i~~~~~~G~~Va~ls~~GdP~i~~~g~~l~~~l~~~gi~vevIPGiSs~~aa~a~~G~p~~~f----~~~----g~~p~ 146 (242)
T 1wyz_A 75 GYLKPLAGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSF----AFH----GYLPI 146 (242)
T ss_dssp HHHHHHHTTCCEEEECC-------CHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHTSCSSSE----EEE----EECCS
T ss_pred HHHHHHHcCCEEEEEecCCCCcccCcHHHHHHHHHHCCCCEEEeCcHHHHHHHHHHcCCCCCeE----EEE----EEcCC
Confidence 78887766 8999997 899999999999999999899999999999999976 8899996543 331 11121
Q ss_pred ch---hHHHHhhhcc---CccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEE
Q 023387 149 SF---YEKIKRNRSL---GLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVG 222 (283)
Q Consensus 149 ~~---~~~l~~~~~~---~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v 222 (283)
.. .+.+..-... ..+|++++ |.+.+..+.+.++++ .+++++++++
T Consensus 147 ~~~~~~~~l~~l~~~~~~~~~t~vl~------------------------~~~~~~~~~~~~l~~-----~~~~~~~v~v 197 (242)
T 1wyz_A 147 EPGERAKKLKTLEQRVYAESQTQLFI------------------------ETPYRNHKMIEDILQ-----NCRPQTKLCI 197 (242)
T ss_dssp STTHHHHHHHHHHHHHHHHTCEEEEE------------------------ECGGGHHHHHHHHHH-----HSCSSSEEEE
T ss_pred CccchHHHHHHHhcccccCCCeEEEE------------------------EcHHHHHHHHHHHHh-----cCCCCCEEEE
Confidence 10 1112111110 12444442 333333333333332 2345899999
Q ss_pred EeccCCCCeEEEEEehhchhhhhcCC-CceEEEEeCCC
Q 023387 223 FARLGSEDQMIVAGTMRLLQMVDFGA-PLHCLVIVGET 259 (283)
Q Consensus 223 ~e~lg~~~E~i~~~tl~el~~~~~~~-~~~sliI~~~~ 259 (283)
++|+|+++|+++++|++++.+..... ...+++++|++
T Consensus 198 v~~~t~~~E~i~~~tl~~l~~~~~~~~~~P~i~vig~~ 235 (242)
T 1wyz_A 198 AANITCEGEFIQTRTVKDWKGHIPELSKIPCIFLLYKL 235 (242)
T ss_dssp EESTTSSSCEEEEEEHHHHSSCCC---CCCEEEEEEC-
T ss_pred EEeCCCCCcEEEEeeHHHHHhhhhccCCCCEEEEEecc
Confidence 99999999999999999997642112 34688888865
No 18
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=99.98 E-value=1e-31 Score=240.48 Aligned_cols=211 Identities=14% Similarity=0.125 Sum_probs=142.4
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCCccccchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~i~~~~~~ 79 (283)
|||+||+||||+++||+||+++|++||+|+|++... .... ++.+. ++++.....++.++..+.+++.+++
T Consensus 17 ~LylVG~GpG~~~~lT~rA~~~L~~aDvI~~edtr~------~~~l---L~~~~~~~~~i~~~~~~~~~~~~~li~~l~~ 87 (296)
T 3kwp_A 17 HLYLVPTPIGNLDDMTFRAVKTLTAVDLIAAEDTRN------TQKL---LNHFEITTKQISFHEHNTQERIPQLIAKLKQ 87 (296)
T ss_dssp EEEECCBCSSCGGGCCHHHHHHHHHSSEEEESCHHH------HHHH---HHHTTCCCEEEECSTTTHHHHHHHHHHHHHT
T ss_pred eEEEeccCCCCccchhhHHHHHHhHhhhhhhhcccc------HHHH---hhheeeeeeeeehhhcchhhHhHHHHHHHhc
Confidence 499999999999999999999999999999976311 0011 33332 2333322334456677788887765
Q ss_pred -CCEEEEe-cCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHH--H
Q 023387 80 -SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEK--I 154 (283)
Q Consensus 80 -~~V~~l~-~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~--l 154 (283)
++||+|+ +|||++|+++.++++.+.+.|++|+++|||||++++ |++|+|++.+ .+. ++.|....++ .
T Consensus 88 G~~Va~lsdaGdP~i~~~g~~lv~~~~~~gi~v~viPGiSA~~aA~a~~Glp~~~f----~f~----g~~p~~~~~r~~~ 159 (296)
T 3kwp_A 88 GMQIAQVSDAGMPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASGLAPQPF----YFY----GFLDRKPKDRKAE 159 (296)
T ss_dssp TCEEEEECSSBCTTSSHHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHSSCCSSE----EEE----EECCSSHHHHHHH
T ss_pred CceEEEeccCCCCCCCCCchHHHHHHHHcCCCeeeCCCcccchHHHHhccCCCCce----eEE----eeccCCcHHHHHH
Confidence 8999998 999999999999999999999999999999999976 8899999654 221 2222211111 1
Q ss_pred HhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEE
Q 023387 155 KRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIV 234 (283)
Q Consensus 155 ~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~ 234 (283)
........+|+++ |+.+.+..+ +++.+.+ .+++++++++++++|+++|+++
T Consensus 160 l~~l~~~~~tlV~------------------------y~~~~rl~~-~l~~L~~----~~g~~~~v~v~~~lt~~~E~i~ 210 (296)
T 3kwp_A 160 IAGLAQRPETLIF------------------------YEAPHRLKK-TLQNLAA----GFGDERPAVLCRELTKRYEEFL 210 (296)
T ss_dssp HHTTTTCCSEEEE------------------------EECGGGHHH-HHHHHHH----HHCTTCEEEEEESTTSTTCEEE
T ss_pred HHHhhcCCceeEe------------------------eeCcHHHHH-HHHHHHH----HhCCcchhHHHHHHHHHHHHHH
Confidence 1111222234443 333333322 2222221 1345799999999999999999
Q ss_pred EEehhchhhh--hc-CCCceEEEEeC
Q 023387 235 AGTMRLLQMV--DF-GAPLHCLVIVG 257 (283)
Q Consensus 235 ~~tl~el~~~--~~-~~~~~sliI~~ 257 (283)
+++++++.+. +. ....++++|-+
T Consensus 211 ~gtl~el~~~~~~~~~~ge~vlvv~~ 236 (296)
T 3kwp_A 211 RGSLAELANWAATDTVRGEFVVLVGG 236 (296)
T ss_dssp EEEHHHHHHHHHHSCCCSCEEEEECC
T ss_pred hccHHHHHhhhcccccceeEEEEEcC
Confidence 9999998763 11 13455555554
No 19
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=99.97 E-value=7.6e-31 Score=230.28 Aligned_cols=194 Identities=21% Similarity=0.293 Sum_probs=129.2
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcc---cccccCCCcchhhhhHHHh-CCCccccc---h----------
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYT---SLLSFGLSTDGLSTLEKLY-GKPIALAD---R---------- 63 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~---~~l~~~i~~~~~~~~~~~~-~k~~~~~~---~---------- 63 (283)
|||+||+|||||++||++|+++|++||+|+|++.. ..+ .+ ...++++.+. ++++.... +
T Consensus 4 ~l~vVG~GpGd~~lLTl~A~~~L~~Advv~~~~~~~~~~~l---~~-~~~~il~~~~~~~~~~~~~~p~~~~~~~~~~~~ 79 (251)
T 2npn_A 4 TIYVIGIGTGSPEFLTLQAISGLRHAQAIVALDKGEQKSDL---LA-LRQKIVDTHAPGTPIYAVTDPERDRNPDNYEEE 79 (251)
T ss_dssp EEEEEECBSSCGGGCCHHHHHHHHHCSEEEEEC---CCHHH---HH-HHHHHHHHHSTTCCEEEECC----------CHH
T ss_pred EEEEEEeCCCChhHhhHHHHHHHHhCCEEEEeCCCCCchhh---hh-hHHHHHHHHhCCCEEEEecCCCcccchhhhhhh
Confidence 49999999999999999999999999999987531 111 00 0011244432 23322110 0
Q ss_pred -----hhHHHHH-HHHHHhccC-CCEEEEecCCCCCCccHHHHHHHHHhCC---CcEEEEcCCchHhHH-HHcCCccccC
Q 023387 64 -----EMVEEKA-DKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLG---IQVKAVHNASVMNAV-GICGLQLYRF 132 (283)
Q Consensus 64 -----~~~~~~~-~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~l~~~~---~~veiiPGISS~~a~-a~~g~pl~~~ 132 (283)
...++.. +.|.+.+++ ++||+|++|||++|+++.++++.+.+.| ++++|||||||++++ |++|+||++.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~g~~Vv~l~~GDP~iy~~~~~l~~~l~~~g~~~i~veviPGiSs~~aa~a~~g~pl~~~ 159 (251)
T 2npn_A 80 VRRWHAERAHLLASTIRERTPDDGAVAFLVWGDPSLYDSTLRIIEHMRNLEDLHADVKVIPGITAVQVLTAEHGILINRI 159 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCEEEEEESBCTTSSCCHHHHHHHHHHHHTCCEEEEEECCCCHHHHHHHHHTCCSSCT
T ss_pred hhhhhhhHHHHHHHHHHHHHHCCCeEEEEeCCCcccccCHHHHHHHHHhcCCCCCcEEEeCChhHHHHHHHHcCCCcCCC
Confidence 1122223 355566655 8999999999999999999999998866 899999999999976 8899999987
Q ss_pred CceeEEecccCCCCCCchhHHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCC
Q 023387 133 GETVSIPFFTETWRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGES 212 (283)
Q Consensus 133 ~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~ 212 (283)
++++.++. ++. +..+.....++++++- .+......|.
T Consensus 160 ~~~~~~~~----g~~------l~~~l~~~~~t~vvl~------------------------~~~~~~~~l~--------- 196 (251)
T 2npn_A 160 GEAIHITT----GRN------LPETSAKDRRNCVVML------------------------DGKTAWQDVA--------- 196 (251)
T ss_dssp TCCCEEEE----TTT------GGGSCTTGGGEEEEES------------------------CSSCTHHHHC---------
T ss_pred CCeEEEEc----cch------hhHHHHhcCCcEEEEE------------------------cchhhHHHhc---------
Confidence 66666652 211 1111111124444321 1111112221
Q ss_pred CCCCCceEEEEeccCCCCeEEEEEehhchhh
Q 023387 213 VYNEDTLCVGFARLGSEDQMIVAGTMRLLQM 243 (283)
Q Consensus 213 ~~~~~~~v~v~e~lg~~~E~i~~~tl~el~~ 243 (283)
++++++++++++|+++|+++.++++++.+
T Consensus 197 --~~~~~v~v~~~l~~~~E~i~~~~l~el~~ 225 (251)
T 2npn_A 197 --TEHTYMWWGAFLGTEQQVLRKGYVHEIGA 225 (251)
T ss_dssp --CTTEEEEEEESTTSTTCEEEEEEHHHHHH
T ss_pred --CCCCEEEEEEECCCCCeEEEEcCHHHHHH
Confidence 23789999999999999999999999854
No 20
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=99.97 E-value=7.7e-31 Score=226.04 Aligned_cols=191 Identities=18% Similarity=0.214 Sum_probs=125.9
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHh-CCCccccchhhHHHHHHHHHHhccC
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~i~~~~~~ 79 (283)
|||+||+||| |++||+||+++|++||+|+++. +. +++++.+. .+.... ...+++.++.+.+..++
T Consensus 23 ~l~lVG~GpG-p~lLTlrA~~~L~~AdvI~~~~--~~---------l~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~g 88 (221)
T 2bb3_A 23 MIWIVGSGTC-RGQTTERAKEIIERAEVIYGSR--RA---------LELAGVVDDSRARIL--RSFKGDEIRRIMEEGRE 88 (221)
T ss_dssp EEEEEECBSS-TTCCCHHHHHHHHHCSEEEECH--HH---------HHHTTCTTCTTEEEC--SCCSHHHHHHHHHHHHH
T ss_pred EEEEEEeCCC-hhHhHHHHHHHHHhCCEEEECH--HH---------HHHhhhhcCCceEec--cchHHHHHHHHHHhcCC
Confidence 6999999999 9999999999999999999743 21 12233322 111111 11234455556543344
Q ss_pred CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchHhHH-HHcCCccccCCceeEEecccCCCCCC-chhHHHHhh
Q 023387 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPG-SFYEKIKRN 157 (283)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~-~~~~~l~~~ 157 (283)
++||+|++|||++|+.+..+ ..+. .++++++||||||++++ |++|+||+++ .+ .+.++++. ..++.+...
T Consensus 89 ~~Vv~L~~GDP~i~~~~~~l-~~~~-~~i~veviPGiSS~~aa~a~~g~pl~~~----~~--vs~~~r~~~~~l~~l~~~ 160 (221)
T 2bb3_A 89 REVAVISTGDPMVAGLGRVL-REIA-EDVEIKIEPAISSVQVALARLKVDLSEV----AV--VDCHAKDFDAELTELLKY 160 (221)
T ss_dssp SCEEEEESBCTTTTTSHHHH-HTSC-CSSEEEEECCCCHHHHHHHHHTCCGGGE----EE--EEC----CCHHHHTHHHH
T ss_pred CcEEEEeCCCCccccCHHHH-HHhc-CCCCEEEECCHHHHHHHHHHhCCCceeE----EE--EeecCCCchHHHHHHhcC
Confidence 89999999999999977654 3342 48999999999999976 8899999852 32 23344432 112222221
Q ss_pred hccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEEe
Q 023387 158 RSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAGT 237 (283)
Q Consensus 158 ~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~t 237 (283)
..++++++... .+. .|. ++++++++++|+++|++++++
T Consensus 161 ----~~~vvl~~~~~---------------------~~~----~l~-------------~~~v~v~~~lg~~~E~i~~~~ 198 (221)
T 2bb3_A 161 ----RHLLILADSHF---------------------PLE----RLG-------------KRRVVLLENLCMEGERIREGN 198 (221)
T ss_dssp ----CEEEEEECTTC---------------------CCG----GGT-------------TCEEEEEESTTSTTCEEEEEE
T ss_pred ----CeEEEEECCCC---------------------CHH----HHh-------------CCeeehhhhcCCCCcEEEEcc
Confidence 23444433210 110 111 168999999999999999999
Q ss_pred hhchhhhhcCCCceEEEEeCC
Q 023387 238 MRLLQMVDFGAPLHCLVIVGE 258 (283)
Q Consensus 238 l~el~~~~~~~~~~sliI~~~ 258 (283)
++++ . ++ .+|++++|+++
T Consensus 199 l~el-~-~~-~~~~slii~~~ 216 (221)
T 2bb3_A 199 ADSI-E-LE-SDYTIIFVERE 216 (221)
T ss_dssp TTTC-C-CC-CSSEEEEECCC
T ss_pred HHHH-h-hc-CCCEEEEEEcC
Confidence 9999 3 44 68999999874
No 21
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Probab=99.96 E-value=5.8e-30 Score=226.77 Aligned_cols=194 Identities=19% Similarity=0.190 Sum_probs=129.8
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhCCEEEEcCccc---ccccCCCcchhhhhHHHh-C--CCccc-----cch-------
Q 023387 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTS---LLSFGLSTDGLSTLEKLY-G--KPIAL-----ADR------- 63 (283)
Q Consensus 2 l~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~---~l~~~i~~~~~~~~~~~~-~--k~~~~-----~~~------- 63 (283)
||+||+|||||++||+||+++|++||+|+|++... .+ ++ .+.++++.+. . ++++. .+.
T Consensus 24 ly~VG~GPGdpellTlrA~~~L~~aDvI~~~~t~~~~~~l---~~-~a~~il~~~~~~~~~~~i~~~~pm~~~~~~~Y~~ 99 (275)
T 3nd1_A 24 LSLIGIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDL---AG-LRRQICAAHLTNPATKVIDFALPVRDASNPSYRK 99 (275)
T ss_dssp EEEEECBSSCGGGCBHHHHHHHHHCSEEEEECCCSCGGGC---HH-HHHHHHHHHCCCTTCEEEEECCCCC---------
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHhCCEEEecCCcccchhh---hh-hHHHHHHHhhcccCcEEEEecCCccccccchhhh
Confidence 99999999999999999999999999999987421 01 00 0123355442 1 22221 110
Q ss_pred --hhH-----HHHHHHHHHhcc--CCCEEEEecCCCCCCccHHHHHHHHHh-CCCcEEEEcCCchHhHH-HHcCCccccC
Q 023387 64 --EMV-----EEKADKILSESQ--ESNVAFLVVGDPFGATTHTDLVVRAKK-LGIQVKAVHNASVMNAV-GICGLQLYRF 132 (283)
Q Consensus 64 --~~~-----~~~~~~i~~~~~--~~~V~~l~~GDP~~~~~~~~l~~~l~~-~~~~veiiPGISS~~a~-a~~g~pl~~~ 132 (283)
..| +.+.+.|.+.++ +++||+|++|||++|+++.++++.+.+ .|+++++||||||++++ |++|+||+++
T Consensus 100 ~~~~~~~~~~~~~~~~i~~~l~~~G~~Va~l~~GDP~i~~~~~~l~~~l~~~~gi~veviPGiSs~~aa~a~~g~pl~~~ 179 (275)
T 3nd1_A 100 GVDDWHDAIAETWLSEITAHVPGLEGRVALLVWGDPSLYDSTLRIAERLKSRLPLTTKVIPGITAIQALCAAHAIPLNDI 179 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTSCEEEEEEESBCTTSSCSHHHHHHTTTTTSSEEEEEECCCCHHHHHHHHHTCCSSCT
T ss_pred hhhhhhHhHHHHHHHHHHHHHHhCCCeEEEEeCCCCcccchHHHHHHHHHHhcCCCEEEecCccHHHHHHHHcCCCCccC
Confidence 111 123445666665 479999999999999999999999987 78999999999999976 8899999988
Q ss_pred CceeEEecccCCCCCCchhHHHHhhhccCccceEeeecccccchhhhhhcCccccCCcccccHHHHHHHHHHHHHHcCCC
Q 023387 133 GETVSIPFFTETWRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCRGKKLYEPPRYMTVNIAIEQLLEVELLQGES 212 (283)
Q Consensus 133 ~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~e~~~~~g~~ 212 (283)
++.+.++.... .+.+ ........++++++. ... +..|
T Consensus 180 ~~~~~~l~g~~-------~~~~-~~~~~~~~~vvl~~~------------------------~~~-l~~i---------- 216 (275)
T 3nd1_A 180 GAPVVITTGRQ-------LRDH-GWPAGTETVVAMLDG------------------------ECS-FQSL---------- 216 (275)
T ss_dssp TCCEEEEEHHH-------HHHH-CSCTTCSEEEEESCS------------------------SCG-GGGS----------
T ss_pred CcEEEEEcCCC-------cchH-HHHhCCCCEEEEECC------------------------ccc-HHHH----------
Confidence 65666543211 1110 000111122333221 111 1111
Q ss_pred CCCCCceEEEEeccCCCCeEEEEEehhchhh
Q 023387 213 VYNEDTLCVGFARLGSEDQMIVAGTMRLLQM 243 (283)
Q Consensus 213 ~~~~~~~v~v~e~lg~~~E~i~~~tl~el~~ 243 (283)
.++++++++++++|+++|+++++|++++.+
T Consensus 217 -~~~~~~v~v~~~l~~~~E~i~~gtL~el~~ 246 (275)
T 3nd1_A 217 -PPDGLTIFWGACVAMPEEVLIRGPVAEVTD 246 (275)
T ss_dssp -CCTTEEEEEEESTTSTTCEEEEEEHHHHHH
T ss_pred -hCCCCEEEehhccCCCCcEEEEEEHHHHHH
Confidence 123789999999999999999999999865
No 22
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=99.89 E-value=4.7e-23 Score=160.09 Aligned_cols=107 Identities=21% Similarity=0.337 Sum_probs=83.3
Q ss_pred CEEEEecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHH-h-CCCccccchhhHHHHHHHHHHhcc
Q 023387 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKL-Y-GKPIALADREMVEEKADKILSESQ 78 (283)
Q Consensus 1 ml~iVG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~-~-~k~~~~~~~~~~~~~~~~i~~~~~ 78 (283)
|||+||+||||+++||+||+++|++||+|+++.... +. +.++.+ . ++++...+...+++.++.+++.++
T Consensus 7 ~ly~VG~GpGd~~~lT~~a~~~L~~advv~~~~~~~------~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 77 (117)
T 3hh1_A 7 TLYVVATPLGNLDDMTFRAVNTLRNAGAIACEDTRR------TS---ILLKHFGIEGKRLVSYHSFNEERAVRQVIELLE 77 (117)
T ss_dssp CEEEEEECSSCGGGSCHHHHHHHHHCSEEEESCHHH------HH---HHHHHTTCCSCCEEECCSTTHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHhhHHHHHHHHhCCEEEEecCch------HH---HHHHHhCCCCCEEeccCCccHHHHHHHHHHHHH
Confidence 599999999999999999999999999999865311 01 113433 1 244433333455667788888876
Q ss_pred C-CCEEEEe-cCCCCCCccHHHHHHHHHhCCCcEEEEcCC
Q 023387 79 E-SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNA 116 (283)
Q Consensus 79 ~-~~V~~l~-~GDP~~~~~~~~l~~~l~~~~~~veiiPGI 116 (283)
+ ++|++++ +|||++|+++.++++.+.+.|++++++||+
T Consensus 78 ~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viPGp 117 (117)
T 3hh1_A 78 EGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPVPGA 117 (117)
T ss_dssp TTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC--
T ss_pred CCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEeCCC
Confidence 6 8999999 899999999999999999899999999995
No 23
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=98.86 E-value=1.5e-08 Score=77.73 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=64.2
Q ss_pred cCCchHhHH-HHcCCccccCCceeEEecccCCCCCCchhHHHHhhhccCccceEeeecccccchhhhhhc-CccccCCcc
Q 023387 114 HNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRSLGLHTLCLLDIRVKEPSLESLCR-GKKLYEPPR 191 (283)
Q Consensus 114 PGISS~~a~-a~~g~pl~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~~~~l~~-~~~~~~~~~ 191 (283)
||+||+.++ +.+|+|.+.+ .| .++.|.+. .+- ..|+.|++ ..++ +.
T Consensus 1 PG~sA~~~Al~~sGlp~~~F------~F--~Gflp~~~-~r~--------------------~~l~~la~~~~Tl---Vf 48 (115)
T 3ffy_A 1 SNATAFVPALVASGLPNEKF------CF--EGFLPQKK-GRM--------------------TKLKSLVDEHRTM---VF 48 (115)
T ss_dssp -CTTTHHHHHHHTTSCCSSE------EE--EESCCSST-THH--------------------HHHHHTTTCCSEE---EE
T ss_pred CchhHHHHHHHHcCCCCCcE------EE--EeeCCCCc-cHH--------------------HHHHHHhCCCCeE---EE
Confidence 899999865 8899997643 22 24444321 110 01222222 1111 23
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCCCCceEEEEeccCCCCeEEEEEehhchhhh---hcCCCceEEEEeC
Q 023387 192 YMTVNIAIEQLLEVELLQGESVYNEDTLCVGFARLGSEDQMIVAGTMRLLQMV---DFGAPLHCLVIVG 257 (283)
Q Consensus 192 ~~~~~~~~~~L~e~~~~~g~~~~~~~~~v~v~e~lg~~~E~i~~~tl~el~~~---~~~~~~~sliI~~ 257 (283)
||.++++.+-+.++.+ .+++++++++++++++++|++++||++|+.+. .-....++++|-|
T Consensus 49 yesp~Rl~~~l~~L~~-----~~g~~~~v~v~relTk~~E~~~rgtl~el~~~~~~~~~kGe~vivv~~ 112 (115)
T 3ffy_A 49 YESPHRLLKTLTQFAE-----YFGPERQVSVSREISKIHEETVRGTLSELIEHFTATDPRGEIVIVLAG 112 (115)
T ss_dssp EECTTTHHHHHHHHHH-----HHCTTCEEEEEEESSSSCEEEEEEEHHHHHHHHHHSCCCSSEEEEECC
T ss_pred EechHHHHHHHHHHHH-----hcCCCCEEEeeeccCCCceEEEEeeHHHHHHHHHhcCCCCCEEEEEeC
Confidence 6666665544444433 24568999999999999999999999998753 1124556666654
No 24
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=53.10 E-value=34 Score=28.35 Aligned_cols=24 Identities=8% Similarity=0.110 Sum_probs=14.8
Q ss_pred cchhhHHHHHHHh--hCCEEEEcCcc
Q 023387 12 ERDITLRGLEAVK--KCDKVYIEAYT 35 (283)
Q Consensus 12 ~d~lT~~A~~~L~--~aDvv~~~~~~ 35 (283)
.+.-...|.+.++ .+|+|+..|.+
T Consensus 48 le~av~~a~~~~~~~~~dVIISRGgt 73 (225)
T 2pju_A 48 FEKAVTYIRKKLANERCDAIIAAGSN 73 (225)
T ss_dssp HHHHHHHHHHHTTTSCCSEEEEEHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCChH
Confidence 3444445666565 38999977654
No 25
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=46.42 E-value=77 Score=25.36 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=13.1
Q ss_pred chhhHHHHHHHhhCCEEEEcCcc
Q 023387 13 RDITLRGLEAVKKCDKVYIEAYT 35 (283)
Q Consensus 13 d~lT~~A~~~L~~aDvv~~~~~~ 35 (283)
+.-...|.+.=+.+|+|+..|.+
T Consensus 39 ~~~v~~a~~~~~~~dVIISRGgt 61 (196)
T 2q5c_A 39 TRASKIAFGLQDEVDAIISRGAT 61 (196)
T ss_dssp HHHHHHHHHHTTTCSEEEEEHHH
T ss_pred HHHHHHHHHhcCCCeEEEECChH
Confidence 33334444442468899976654
No 26
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=44.99 E-value=48 Score=26.23 Aligned_cols=53 Identities=15% Similarity=0.060 Sum_probs=34.1
Q ss_pred EecCCCCcchhhHHHHHHHhhCCEEEEcCcccccccCCCcchhhhhHHHhCCCccc
Q 023387 5 IGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIAL 60 (283)
Q Consensus 5 VG~GPG~~d~lT~~A~~~L~~aDvv~~~~~~~~l~~~i~~~~~~~~~~~~~k~~~~ 60 (283)
+++=|.|++.|...-.++++++|+|+..|..+.-..++-+++ +.+..++++..
T Consensus 42 ~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~D~T~ea---~a~~~~~~l~~ 94 (172)
T 3kbq_A 42 GFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDDMTVEG---FAKCIGQDLRI 94 (172)
T ss_dssp EEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTTCCHHHH---HHHHHTCCCEE
T ss_pred EEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcccchHHH---HHHHcCCCeee
Confidence 444477888998888889999999998876542211112222 55555666654
No 27
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=37.19 E-value=62 Score=24.99 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=28.6
Q ss_pred HHHhccCCCEEEEecCCCCCCccHHHHHHHHHhC-CCcEEEEc
Q 023387 73 ILSESQESNVAFLVVGDPFGATTHTDLVVRAKKL-GIQVKAVH 114 (283)
Q Consensus 73 i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~l~~~-~~~veiiP 114 (283)
+.+.+..-+.++|++|| +=+..+++.+++. |.+|.++.
T Consensus 102 ~~~~a~~~d~~vLvSgD----~DF~plv~~lr~~~G~~V~v~g 140 (165)
T 2qip_A 102 AIEIAPDVDRVILVSGD----GDFSLLVERIQQRYNKKVTVYG 140 (165)
T ss_dssp HHHHGGGCSEEEEECCC----GGGHHHHHHHHHHHCCEEEEEE
T ss_pred HHHhhccCCEEEEEECC----hhHHHHHHHHHHHcCcEEEEEe
Confidence 44444336889999999 4566788999996 99998874
No 28
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=28.42 E-value=1.9e+02 Score=22.08 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=53.0
Q ss_pred hhhHHHHHHHHHHhccCCCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcC-CchHhHH-HHcCCccccCCceeEEec
Q 023387 63 REMVEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHN-ASVMNAV-GICGLQLYRFGETVSIPF 140 (283)
Q Consensus 63 ~~~~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPG-ISS~~a~-a~~g~pl~~~~~~~~i~~ 140 (283)
.+.+++.++.|.+ .++|.++-.|.. +....++...+...|.++..+++ .+.+... ..++ . +.+.|.
T Consensus 26 ~~~l~~~~~~i~~---a~~I~i~G~G~S--~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~----~--~d~~i~- 93 (187)
T 3sho_A 26 PEAIEAAVEAICR---ADHVIVVGMGFS--AAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLR----P--TDLMIG- 93 (187)
T ss_dssp HHHHHHHHHHHHH---CSEEEEECCGGG--HHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCC----T--TEEEEE-
T ss_pred HHHHHHHHHHHHh---CCEEEEEecCch--HHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCC----C--CCEEEE-
Confidence 3444555544432 367777777753 23444566667777899999994 4444432 3222 1 223332
Q ss_pred ccCCCCCCchhHHHHhhhccCccceEeeec
Q 023387 141 FTETWRPGSFYEKIKRNRSLGLHTLCLLDI 170 (283)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~ 170 (283)
.+..+......+.++.....|..++.+++.
T Consensus 94 iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~ 123 (187)
T 3sho_A 94 VSVWRYLRDTVAALAGAAERGVPTMALTDS 123 (187)
T ss_dssp ECCSSCCHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EeCCCCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 344444433344455556678888887764
No 29
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=27.86 E-value=1.4e+02 Score=24.68 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=39.5
Q ss_pred HHHHHHHHhccCCCEEEEecCCCCCCccHHHHHHHHHhC----CCcEEEEcCCchHh---HHHHcCCccccCCc
Q 023387 68 EKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKL----GIQVKAVHNASVMN---AVGICGLQLYRFGE 134 (283)
Q Consensus 68 ~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~l~~~----~~~veiiPGISS~~---a~a~~g~pl~~~~~ 134 (283)
.++....+..+++.++.|-+| |+..++++.+.+. +.++.+|| +|++ .+...|+++...++
T Consensus 7 ~iA~~A~~~V~dg~vIgLGsG-----ST~~~~i~~L~~~~~~~~~~i~~Vt--tS~~t~~~l~~~Gi~l~~l~~ 73 (225)
T 3l7o_A 7 IAGVRAAQYVEDGMIVGLGTG-----STAYYFVEEVGRRVQEEGLQVIGVT--TSSRTTAQAQALGIPLKSIDE 73 (225)
T ss_dssp HHHHHHHTTCCTTCEEEECCS-----TTHHHHHHHHHHHHHHHCCCCEEEE--SSHHHHHHHHHHTCCBCCGGG
T ss_pred HHHHHHHHhCCCCCEEEECCc-----HHHHHHHHHHHHhhhhcCCCEEEEc--CCHHHHHHHhccCceEEecCc
Confidence 355556666667888888888 4666777777553 56777776 4443 23457998876544
No 30
>1wqc_A OMTX1; toxin; NMR {Opisthacanthus madagascariensis} PDB: 1wqd_A
Probab=27.46 E-value=12 Score=19.71 Aligned_cols=6 Identities=67% Similarity=0.966 Sum_probs=3.9
Q ss_pred CCCCCC
Q 023387 278 QHTGNV 283 (283)
Q Consensus 278 ~~~~~~ 283 (283)
||+|||
T Consensus 9 qh~gNV 14 (26)
T 1wqc_A 9 QQHGNV 14 (26)
T ss_dssp HHCCCS
T ss_pred HhCCCH
Confidence 567765
No 31
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=26.76 E-value=55 Score=25.19 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhccCCCEEEEe-cCCCCCCccHHHHHHHH
Q 023387 65 MVEEKADKILSESQESNVAFLV-VGDPFGATTHTDLVVRA 103 (283)
Q Consensus 65 ~~~~~~~~i~~~~~~~~V~~l~-~GDP~~~~~~~~l~~~l 103 (283)
++++..+.+.+.++.++++++. +|| ++..+..+++.+
T Consensus 124 d~~eai~~~~~~~~~gDvVLv~Gsg~--~~~~~~~l~~~l 161 (163)
T 3mvn_A 124 DVDELVMRIVQQAKPNDHILIMSNGA--FGGIHQKLLTAL 161 (163)
T ss_dssp SHHHHHHHHHHHCCTTCEEEEECSSC--GGGHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCCCEEEEECCCC--HHHHHHHHHHHH
Confidence 4456667777777778877776 888 666665665543
No 32
>3c66_C PRE-mRNA polyadenylation factor FIP1; peptide-protein complex, mRNA processing, nucleus, RNA-bindi transferase, phosphoprotein; HET: MES; 2.60A {Saccharomyces cerevisiae}
Probab=25.22 E-value=16 Score=19.35 Aligned_cols=12 Identities=42% Similarity=0.614 Sum_probs=8.2
Q ss_pred EEEecCCCCcchh
Q 023387 3 YIIGLGLGDERDI 15 (283)
Q Consensus 3 ~iVG~GPG~~d~l 15 (283)
+|||+|| |+--|
T Consensus 4 fIIs~G~-D~trL 15 (26)
T 3c66_C 4 VIISLGP-DPTRL 15 (26)
T ss_dssp EESCSSS-STTEE
T ss_pred EEEecCC-Ccccc
Confidence 5889999 55444
No 33
>1wqe_A OMTX3; structure, scorpion toxin, cystine-stabilized helix- turn-helix; NMR {Opisthacanthus madagascariensis}
Probab=23.90 E-value=9.8 Score=19.98 Aligned_cols=6 Identities=83% Similarity=1.298 Sum_probs=3.3
Q ss_pred CCCCCC
Q 023387 278 QHTGNV 283 (283)
Q Consensus 278 ~~~~~~ 283 (283)
||||||
T Consensus 10 qh~gnV 15 (26)
T 1wqe_A 10 QHTGDV 15 (26)
T ss_dssp HHTCCH
T ss_pred HhCCCH
Confidence 456654
No 34
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=22.87 E-value=2e+02 Score=20.14 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=37.1
Q ss_pred CCCCeEEEEEehhchhhhhcCCCceEEEEeC--CCChhHHHHHhhccCCCCCCC
Q 023387 227 GSEDQMIVAGTMRLLQMVDFGAPLHCLVIVG--ETHPVEEEMLDFYRLTDDVPQ 278 (283)
Q Consensus 227 g~~~E~i~~~tl~el~~~~~~~~~~sliI~~--~~~~~~~~~~~~~~~~~~~~~ 278 (283)
|.+|-+|++-+++. . ..+..|-|+++-. +...+.+.+|.+.++.+.-|+
T Consensus 1 ~~~d~~iIRVs~e~--~-~~Gn~YKSIlltsqDktp~vI~~al~Khnl~~~~~~ 51 (90)
T 1rlf_A 1 GSSDCRIIRVQMEL--G-EDGSVYKSILVTSQDKAPSVISRVLKKNNRDSAVAS 51 (90)
T ss_dssp CCSCEEEEEEEECC--S-SSCCSCCEEEEETTCCCTTHHHHHHHHTTTTSCCCC
T ss_pred CCCceEEEEEEEEe--C-CCCceEEEEEEecCCCcHHHHHHHHHHcCCCCCChh
Confidence 56778888888874 1 2246788999987 688899999999998875443
No 35
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=21.16 E-value=95 Score=25.30 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=30.0
Q ss_pred cCCCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCchH
Q 023387 78 QESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVM 119 (283)
Q Consensus 78 ~~~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS~ 119 (283)
+++++++..+|-...|-....+++.|.+.|.+|.++---++.
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~~~g~eV~vv~T~~A~ 45 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIAEGAEVRPVVSYTVQ 45 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHHTTCEEEEEECC---
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHHhCCCEEEEEEehHHH
Confidence 457899989997666643457889998888899888655554
No 36
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=20.81 E-value=1.9e+02 Score=23.85 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=39.5
Q ss_pred HHHHHHHHhccCCCEEEEecCCCCCCccHHHHHHHHHhCCCcEEE-EcCCchHh---HHHHcCCccccCCc
Q 023387 68 EKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKA-VHNASVMN---AVGICGLQLYRFGE 134 (283)
Q Consensus 68 ~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~vei-iPGISS~~---a~a~~g~pl~~~~~ 134 (283)
.+++...+..+++.++.|-+| |+..++++.+.+...++.+ +| +|++ .+...|+++...++
T Consensus 15 ~iA~~A~~~V~~g~~IglgsG-----ST~~~~i~~L~~~~~~itv~Vt--nS~~~a~~l~~~gi~l~~l~~ 78 (224)
T 3kwm_A 15 LAATEAAKSITTEITLGVGTG-----STVGFLIEELVNYRDKIKTVVS--SSEDSTRKLKALGFDVVDLNY 78 (224)
T ss_dssp HHHHHHHTTCCSSEEEEECCS-----HHHHHHHHHGGGCTTTEEEEEE--SCHHHHHHHHHTTCCBCCHHH
T ss_pred HHHHHHHHhCCCCCEEEECCc-----HHHHHHHHHHHhhcCceEEEEC--CcHHHHHHHHHcCCeEEecCc
Confidence 355555555566778888777 5777888888765346776 76 4443 23558998776543
No 37
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=20.74 E-value=2.3e+02 Score=23.66 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=37.5
Q ss_pred HHHHHHHHH-hccCCCEEEEecCCCCCCccHHHHHHHHHh----CCC-cEEEEcCC-chHhHHHHcCCccccC
Q 023387 67 EEKADKILS-ESQESNVAFLVVGDPFGATTHTDLVVRAKK----LGI-QVKAVHNA-SVMNAVGICGLQLYRF 132 (283)
Q Consensus 67 ~~~~~~i~~-~~~~~~V~~l~~GDP~~~~~~~~l~~~l~~----~~~-~veiiPGI-SS~~a~a~~g~pl~~~ 132 (283)
+.+++...+ ..+++.+++|-+|- +..++++.|.+ .+. ++.+||-- .+.+.+...|+++...
T Consensus 14 ~~iA~~Aa~~~I~dg~~IgLgsGS-----T~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l 81 (244)
T 2f8m_A 14 KIVAYKAVDEYVQSNMTIGLGTGS-----TVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKLGIPLTTL 81 (244)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCST-----TTHHHHHHHHHHHHHTSSCSCEEEESSHHHHHHHHHHTCCBCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEcChH-----HHHHHHHHHhhhhhccCCCCEEEECCcHHHHHHHHHCCCeEEEe
Confidence 345666666 66778889998984 66677777753 233 56666532 2223343458877654
No 38
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=20.72 E-value=2.5e+02 Score=20.53 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=30.5
Q ss_pred CCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCC
Q 023387 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNA 116 (283)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGI 116 (283)
=++.++-.|....+.....+.+.+++.|+.+|+-+=.
T Consensus 62 ~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~ 98 (122)
T 2ab1_A 62 VQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTE 98 (122)
T ss_dssp CSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHH
Confidence 5888999999988755668889999999999997633
No 39
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=20.67 E-value=2.1e+02 Score=25.10 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=28.6
Q ss_pred HHHHHHHhccCCCE-EEEecCCCCCCc-c-------HHHHHHHHHhCCCcEEEEcCC
Q 023387 69 KADKILSESQESNV-AFLVVGDPFGAT-T-------HTDLVVRAKKLGIQVKAVHNA 116 (283)
Q Consensus 69 ~~~~i~~~~~~~~V-~~l~~GDP~~~~-~-------~~~l~~~l~~~~~~veiiPGI 116 (283)
..+.+++.+.+.++ .++..||-+=.+ + ....++.+.+.++++-++||=
T Consensus 48 ~l~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v~GN 104 (386)
T 3av0_A 48 SFKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNIKVYIVAGN 104 (386)
T ss_dssp HHHHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHHTTCEEEECCCG
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 34556666555444 777899964333 1 123344455557899999984
No 40
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=20.38 E-value=96 Score=25.11 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=31.5
Q ss_pred cCCCEEEEecCCCCCCccHHHHHHHHHhCCCcEEEEcCCch
Q 023387 78 QESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (283)
Q Consensus 78 ~~~~V~~l~~GDP~~~~~~~~l~~~l~~~~~~veiiPGISS 118 (283)
+++++++-.+|--..|.-+..+++.|.+.|.+|.++---++
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~~g~eV~vv~T~~A 46 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVELGAKVTPFVTHTV 46 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHHTTCEEEEECSSCS
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhhCCCEEEEEEChhH
Confidence 45789999999877774456888999888888888854444
No 41
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=20.33 E-value=2e+02 Score=23.64 Aligned_cols=58 Identities=21% Similarity=0.166 Sum_probs=36.4
Q ss_pred HHHHHHHHHhccCCCEEEEecCCCCCCccHHHHHHHHHhC----CCc-EEEEcCCchHh---HHHHcCCcccc
Q 023387 67 EEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKL----GIQ-VKAVHNASVMN---AVGICGLQLYR 131 (283)
Q Consensus 67 ~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~l~~~----~~~-veiiPGISS~~---a~a~~g~pl~~ 131 (283)
+.+++...+..+++.++++-+| ++..++++.+.+. +.+ +.++|- |++ .++..|+++..
T Consensus 10 ~~IA~~Aa~~I~dg~~I~LgsG-----ST~~~~~~~L~~~~~~~~l~~itvVTn--S~~~a~~l~~~gi~v~~ 75 (227)
T 1uj6_A 10 KEAAHAAIAYVQDGMVVGLGTG-----STARYAVLELARRLREGELKGVVGVPT--SRATEELAKREGIPLVD 75 (227)
T ss_dssp HHHHHHHHTTCCTTCEEEECCS-----HHHHHHHHHHHHHHHTTSSCSCEEEES--SHHHHHHHHHTTCCBCC
T ss_pred HHHHHHHHHHCCCCCEEEEcCC-----HHHHHHHHHHhhhhhhcCCCCEEEECC--cHHHHHHHHhCCCeEEE
Confidence 4456666666667888888888 5677777777543 334 666653 443 23456777654
Done!