Query 023388
Match_columns 283
No_of_seqs 27 out of 29
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 05:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c3v_A Alpha-amylase G-6; carb 93.3 0.079 2.7E-06 41.6 4.1 71 103-186 6-77 (102)
2 2laa_A Beta/alpha-amylase; SBD 91.9 0.1 3.5E-06 41.0 3.0 68 105-187 3-73 (104)
3 3d6x_A (3R)-hydroxymyristoyl-[ 34.4 7.7 0.00026 29.1 -0.2 20 119-141 37-57 (146)
4 2e9g_A AP-1 complex subunit ga 25.8 94 0.0032 24.2 4.7 29 171-199 40-69 (131)
5 2rp4_A Transcription factor P5 22.9 36 0.0012 26.2 1.7 13 184-196 19-31 (76)
6 1gyu_A Adapter-related protein 20.1 88 0.003 24.9 3.5 29 171-199 49-78 (140)
7 1iu1_A Gamma1-adaptin; coated 19.7 1.5E+02 0.0053 23.6 4.9 29 171-199 55-84 (146)
8 3zy7_A AP-1 complex subunit ga 19.0 1.8E+02 0.0063 22.4 5.1 29 170-198 30-59 (122)
9 2gll_A FABZ, (3R)-hydroxymyris 18.5 21 0.00072 28.4 -0.4 21 118-141 58-79 (171)
10 1klf_A FIMC chaperone, chapero 18.2 71 0.0024 26.6 2.7 60 40-120 50-122 (205)
No 1
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=93.32 E-value=0.079 Score=41.60 Aligned_cols=71 Identities=17% Similarity=0.362 Sum_probs=45.0
Q ss_pred CCCCCceEEEEccccCCCCCCCcceeeecCCCCCccccCCchhhhhhhhhCCCCCCceEEEeeeccceeeEEEEeecCC-
Q 023388 103 PMSGEKLKIFYNPYAKKLLPNEDFGIGFNGSFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGV- 181 (283)
Q Consensus 103 P~sGe~L~lfyNp~as~l~PNe~fGiaFNGgFNQPIMCGGEPR~M~~k~RGkad~PiYtI~I~vPkHa~~LiFSFTnG~- 181 (283)
|..|+..+|||+.. -=.++-.||.+- |.+.+.= | -.|.+. .|.=-|...|.+|. +-.|+|-|+||.
T Consensus 6 p~~g~~vTvyY~sg--~~~~ylHy~~~~-g~Wt~vp---g--v~M~~~----~~~Gw~~~TI~~~~-~~~l~~~F~dG~~ 72 (102)
T 2c3v_A 6 SGDATDITIYYKTG--WTHPHIHYSLNQ-GAWTTLP---G--VPLTKS----EXEGXVKVTIEAEE-GSQLRAAFNNGSG 72 (102)
T ss_dssp --CCCSEEEEEECC--CSSCEEEEEETT-CCBCCTT---C--EECEEC----SSTTEEEEEECCCT-TCEEEEEEECSSS
T ss_pred CCCCCEEEEEEcCC--CCcEEEEEeCCC-CCcccCC---C--cCcccc----ccCCceEEEEecCC-CceEEEEEeCCCc
Confidence 34499999999933 334555666332 3466531 1 124332 24445688899984 689999999999
Q ss_pred CCCCc
Q 023388 182 EWDGP 186 (283)
Q Consensus 182 ~WDGp 186 (283)
.||-.
T Consensus 73 ~WDNN 77 (102)
T 2c3v_A 73 QWDNN 77 (102)
T ss_dssp CEECG
T ss_pred ccccC
Confidence 79954
No 2
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=91.86 E-value=0.1 Score=40.98 Aligned_cols=68 Identities=24% Similarity=0.397 Sum_probs=44.7
Q ss_pred CCCceEEEEccccCCCCCCCcceeeecCCCCCccccCCchh-hhhhhhhCCCCCCce-EEEeeeccceeeEEEEeecCC-
Q 023388 105 SGEKLKIFYNPYAKKLLPNEDFGIGFNGSFNQPFMCGGEPR-AMLRKNRGQNDSPFY-TIQICVPKHAINLIFSFTNGV- 181 (283)
Q Consensus 105 sGe~L~lfyNp~as~l~PNe~fGiaFNGgFNQPIMCGGEPR-~M~~k~RGkad~PiY-tI~I~vPkHa~~LiFSFTnG~- 181 (283)
.|+.++|||++.+++. .-.||.+- |.++++ |= .|.+. .-|-| +..|.||. +..|+|-|+||.
T Consensus 3 ~g~~vtiyY~~g~~~v--ylHyg~~~-g~Wt~~------~~v~M~~~-----~~~gw~~~TI~l~~-g~~~~~~F~dG~~ 67 (104)
T 2laa_A 3 TGNKVTIYYKKGFNSP--YIHYRPAG-GSWTAA------PGVKMQDA-----EISGYAKITVDIGS-ASQLEAAFNDGNN 67 (104)
T ss_dssp CCCEEEEEEECSSSSC--EEEEEETT-SCCCSS------SCEECEEE-----TTTTEEEEEEECTT-CSCEEEEEECSSS
T ss_pred CCCEEEEEEcCCCCcE--EEEEcCCC-CCCCcC------Cccccccc-----cCCCeEEEEEECCC-CCEEEEEEeCCCC
Confidence 4899999999765543 33555222 456654 21 23222 11567 69999996 689999999998
Q ss_pred CCCCce
Q 023388 182 EWDGPY 187 (283)
Q Consensus 182 ~WDGpY 187 (283)
.||-.-
T Consensus 68 ~WDNn~ 73 (104)
T 2laa_A 68 NWDSNN 73 (104)
T ss_dssp CEESTT
T ss_pred cCcCCC
Confidence 799653
No 3
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=34.41 E-value=7.7 Score=29.06 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=17.0
Q ss_pred CCCCCCcceeeecCCC-CCccccC
Q 023388 119 KLLPNEDFGIGFNGSF-NQPFMCG 141 (283)
Q Consensus 119 ~l~PNe~fGiaFNGgF-NQPIMCG 141 (283)
.+++|+.| |.|.| +||||=|
T Consensus 37 ~v~~~~~~---f~ghFp~~Pi~PG 57 (146)
T 3d6x_A 37 NISISDHV---FMGHFPGHPIYPG 57 (146)
T ss_dssp ECCTTBTH---HHHSCTTSCCCCH
T ss_pred EcCCCCCe---ecCCCCCCCcCch
Confidence 47788887 99999 7999977
No 4
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.75 E-value=94 Score=24.24 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=20.8
Q ss_pred eeEEEEeecCCCC-CCceeEEEecCccccc
Q 023388 171 INLIFSFTNGVEW-DGPYRIKFLVPRAWRN 199 (283)
Q Consensus 171 ~~LiFSFTnG~~W-DGpY~L~f~VP~~~~n 199 (283)
+.+..+|+|-..- =--|.+|+.|||.|+=
T Consensus 40 ~~i~~~~~N~s~~~it~f~fQaAVPK~~kL 69 (131)
T 2e9g_A 40 LLITITATNFSEGDVTHFICQAAVPKSLQL 69 (131)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEECCTTSCC
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEE
Confidence 6677788885442 2347899999998864
No 5
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=22.90 E-value=36 Score=26.23 Aligned_cols=13 Identities=38% Similarity=0.838 Sum_probs=12.2
Q ss_pred CCceeEEEecCcc
Q 023388 184 DGPYRIKFLVPRA 196 (283)
Q Consensus 184 DGpY~L~f~VP~~ 196 (283)
||.|||.+..|++
T Consensus 19 dGdYrL~itcpkK 31 (76)
T 2rp4_A 19 DGDYRLAITCPNK 31 (76)
T ss_dssp TTBEEEEEEESCH
T ss_pred CCceEEEEEeCcH
Confidence 8999999999986
No 6
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=20.09 E-value=88 Score=24.93 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=20.4
Q ss_pred eeEEEEeecCCCC-CCceeEEEecCccccc
Q 023388 171 INLIFSFTNGVEW-DGPYRIKFLVPRAWRN 199 (283)
Q Consensus 171 ~~LiFSFTnG~~W-DGpY~L~f~VP~~~~n 199 (283)
+.+..+|+|-..- =--|.+|+.|||.|+=
T Consensus 49 ~~i~~~f~N~s~~~it~f~fQaAVPKs~kL 78 (140)
T 1gyu_A 49 TVITIQASNSTELDMTDFVFQAAVPKTFQL 78 (140)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTCEE
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEE
Confidence 5667778875442 2347899999998863
No 7
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=19.67 E-value=1.5e+02 Score=23.59 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=20.8
Q ss_pred eeEEEEeecCCCC-CCceeEEEecCccccc
Q 023388 171 INLIFSFTNGVEW-DGPYRIKFLVPRAWRN 199 (283)
Q Consensus 171 ~~LiFSFTnG~~W-DGpY~L~f~VP~~~~n 199 (283)
+.+..+|+|-... =--|.+|+.|||.|+=
T Consensus 55 ~~i~~~f~N~s~~~it~f~fQaAVPK~~kL 84 (146)
T 1iu1_A 55 TVITIQASNSTELDMTDFVFQAAVPKTFQL 84 (146)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEE
T ss_pred EEEEEEEEeCCCCccccEEEEEEcCcccEE
Confidence 6677788885442 2357899999998863
No 8
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=19.02 E-value=1.8e+02 Score=22.36 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=21.6
Q ss_pred eeeEEEEeecCCCCC-CceeEEEecCcccc
Q 023388 170 AINLIFSFTNGVEWD-GPYRIKFLVPRAWR 198 (283)
Q Consensus 170 a~~LiFSFTnG~~WD-GpY~L~f~VP~~~~ 198 (283)
.+.+..+|+|-..-+ --+.+|..|||.|+
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~k 59 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQ 59 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSE
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccE
Confidence 377888888865432 34789999999875
No 9
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=18.49 E-value=21 Score=28.38 Aligned_cols=21 Identities=52% Similarity=0.906 Sum_probs=16.4
Q ss_pred CCCCCCCcceeeecCCC-CCccccC
Q 023388 118 KKLLPNEDFGIGFNGSF-NQPFMCG 141 (283)
Q Consensus 118 s~l~PNe~fGiaFNGgF-NQPIMCG 141 (283)
..+++|+.| |.|-| ++|||=|
T Consensus 58 k~Vt~~e~f---f~GHFp~~PvmPG 79 (171)
T 2gll_A 58 KNITFNEDV---FNGHFPNKPIFPG 79 (171)
T ss_dssp EECCSCSTH---HHHSCTTSCCCCH
T ss_pred EEeCCCCCe---ecCCCCCCCcCch
Confidence 346677776 89999 8999976
No 10
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=18.23 E-value=71 Score=26.59 Aligned_cols=60 Identities=22% Similarity=0.484 Sum_probs=39.5
Q ss_pred ccccccCCCccccceeEEeceeeeeeeccCCchhccccccCCchhhhccCCCceEeEecCCCCCCCCC------------
Q 023388 40 KGASLPRSSPKQKKTVRITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGE------------ 107 (283)
Q Consensus 40 ~~~~l~r~~~~~~~~vr~~~~v~aaaa~~~~~~~~~~ey~lPsWa~FElG~apVyWkt~nGlpP~sGe------------ 107 (283)
+..-+.|--+.++..|||..+. . -.|| ..|-.+||=.-..+||.+.+
T Consensus 50 vtPPl~rl~p~~~q~lRI~~~~-~--------------~~lP------~DrEslf~lnv~eIPp~~~~~~~~n~lqia~r 108 (205)
T 1klf_A 50 VTPPLFAMKGKKENTLRILDAT-N--------------NQLP------QDRESLFWMNVKAIPSMDKSKLTENTLQLAII 108 (205)
T ss_dssp EESSEEEECSSEEEEEEEEECS-C--------------SCSC------SSSCEEEEEEEEEECCCCTTSTTSCEEEEEEE
T ss_pred EcCCeEEECCCCceEEEEEecC-C--------------CCCC------CCceEEEEEEeEecCCCCccccCCceEEEEee
Confidence 3445666667777777764411 0 0233 24557999999999997532
Q ss_pred -ceEEEEccccCCC
Q 023388 108 -KLKIFYNPYAKKL 120 (283)
Q Consensus 108 -~L~lfyNp~as~l 120 (283)
++||||-|++-+-
T Consensus 109 ~riKlFyRP~~l~~ 122 (205)
T 1klf_A 109 SRIKLYYRPAKLAL 122 (205)
T ss_dssp EEEEEEEECTTCSS
T ss_pred eeeeEEEcccccCC
Confidence 4899999997643
Done!