Query 023389
Match_columns 283
No_of_seqs 193 out of 378
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 03:40:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 1.3E-25 2.9E-30 162.9 6.7 49 121-169 3-51 (51)
2 PLN03162 golden-2 like transcr 99.9 1.1E-23 2.3E-28 203.1 6.7 62 17-79 230-291 (526)
3 TIGR01557 myb_SHAQKYF myb-like 99.9 7E-22 1.5E-26 145.4 6.4 56 22-77 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.3 0.00062 1.3E-08 47.3 5.7 48 24-75 1-48 (48)
5 PF14379 Myb_CC_LHEQLE: MYB-CC 90.9 0.47 1E-05 35.1 4.4 34 134-168 6-39 (51)
6 smart00426 TEA TEA domain. 88.9 0.47 1E-05 37.0 3.2 18 26-43 5-22 (68)
7 PF15235 GRIN_C: G protein-reg 72.0 3.1 6.7E-05 36.4 2.4 28 141-168 71-98 (137)
8 PF00435 Spectrin: Spectrin re 61.0 52 0.0011 23.8 6.8 56 141-201 41-96 (105)
9 PF12776 Myb_DNA-bind_3: Myb/S 58.3 14 0.0003 28.1 3.5 50 26-75 1-62 (96)
10 cd00167 SANT 'SWI3, ADA2, N-Co 55.8 49 0.0011 20.8 5.4 43 26-73 1-43 (45)
11 PF01519 DUF16: Protein of unk 55.2 27 0.00058 29.3 4.8 27 139-165 65-91 (102)
12 smart00717 SANT SANT SWI3, AD 53.3 56 0.0012 20.7 5.6 44 25-73 2-45 (49)
13 smart00501 BRIGHT BRIGHT, ARID 51.1 15 0.00033 28.5 2.7 46 29-75 32-84 (93)
14 PF07384 DUF1497: Protein of u 32.2 42 0.0009 25.3 2.3 22 25-46 36-57 (59)
15 PF13779 DUF4175: Domain of un 31.6 2.5E+02 0.0054 31.0 8.9 50 120-169 465-521 (820)
16 TIGR02894 DNA_bind_RsfA transc 31.0 29 0.00064 31.1 1.6 54 17-76 41-94 (161)
17 cd08783 Death_MALT1 Death doma 27.5 1.1E+02 0.0023 25.6 4.1 48 22-73 35-83 (97)
18 TIGR02302 aProt_lowcomp conser 24.8 3.6E+02 0.0077 30.1 8.6 48 120-167 496-550 (851)
19 cd07646 I-BAR_IMD_IRSp53 Inver 24.5 2.7E+02 0.0059 26.5 6.7 66 121-191 67-141 (232)
20 KOG2620 Prohibitins and stomat 21.9 2.2E+02 0.0048 27.9 5.8 46 121-166 158-209 (301)
21 cd07645 I-BAR_IMD_BAIAP2L1 Inv 21.5 3.5E+02 0.0075 25.7 6.8 65 121-190 65-138 (226)
22 PHA02827 hypothetical protein; 20.3 1.3E+02 0.0028 26.9 3.6 40 37-77 105-148 (150)
23 PF08127 Propeptide_C1: Peptid 20.1 55 0.0012 22.9 1.0 35 31-72 1-35 (41)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.92 E-value=1.3e-25 Score=162.86 Aligned_cols=49 Identities=73% Similarity=0.965 Sum_probs=47.6
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 023389 121 PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS 169 (283)
Q Consensus 121 qI~EALr~QmEVQrrLhEQLEVQRhLQLRIEAQGKYLQsiLEKAqetLa 169 (283)
+|+|||++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus 3 ~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s 51 (51)
T PF14379_consen 3 QITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS 51 (51)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999875
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.89 E-value=1.1e-23 Score=203.12 Aligned_cols=62 Identities=45% Similarity=0.753 Sum_probs=58.3
Q ss_pred cccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023389 17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ 79 (283)
Q Consensus 17 ~~~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~ 79 (283)
....+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.++
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk 291 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR 291 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence 345778999999999999999999999 79999999999999999999999999999999875
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.86 E-value=7e-22 Score=145.43 Aligned_cols=56 Identities=66% Similarity=1.042 Sum_probs=54.2
Q ss_pred CCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023389 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (283)
Q Consensus 22 K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~ 77 (283)
|+|++||+|+|.+|++||+.||+.+.||||.|+++|++++||..+|+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 69999999999999999999998899999999999999999999999999999975
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.34 E-value=0.00062 Score=47.28 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=41.5
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 023389 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75 (283)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYR 75 (283)
|-.||++=+..|++||.++|. -.-+.|...|+ ++-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~---~~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK---DNWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT---THHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---cHHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 568999999999999999992 26899999999 8999999999999985
No 5
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=90.91 E-value=0.47 Score=35.10 Aligned_cols=34 Identities=38% Similarity=0.497 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhc
Q 023389 134 QRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSL 168 (283)
Q Consensus 134 rrLhEQLEVQRhLQLRIEAQGKYLQsiLEKAqetL 168 (283)
.-|+.|+||||+|.=.+|.| |-||.-+|...+-|
T Consensus 6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl 39 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYL 39 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence 45788999999999999988 67777776665544
No 6
>smart00426 TEA TEA domain.
Probab=88.91 E-value=0.47 Score=36.96 Aligned_cols=18 Identities=22% Similarity=0.584 Sum_probs=16.6
Q ss_pred ccChHHHHHHHHHHHHhC
Q 023389 26 RWTADLHDRFVDAVTKLG 43 (283)
Q Consensus 26 rWT~eLH~rFV~AV~~LG 43 (283)
.|.++|-..|++|+...-
T Consensus 5 vWp~~lE~Af~~aL~~~~ 22 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP 22 (68)
T ss_pred cCcHHHHHHHHHHHHHcC
Confidence 699999999999999775
No 7
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=71.96 E-value=3.1 Score=36.37 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=21.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhc
Q 023389 141 EVQERLQMRIEAQGKYLQAILQKAQKSL 168 (283)
Q Consensus 141 EVQRhLQLRIEAQGKYLQsiLEKAqetL 168 (283)
-||+||+++||.|++.+..--.++.++.
T Consensus 71 AIQkHLE~qi~e~~~q~~~~~~~~~~~~ 98 (137)
T PF15235_consen 71 AIQKHLERQIEEHERQRAPQKKQARKSP 98 (137)
T ss_pred HHHHHHHHHHHHhhhccccccccccccc
Confidence 4889999999999998766544444443
No 8
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=60.97 E-value=52 Score=23.82 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=40.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhHHHHhhhhhhhhhhhHhhhc
Q 023389 141 EVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESM 201 (283)
Q Consensus 141 EVQRhLQLRIEAQGKYLQsiLEKAqetLa~~~~~~~~~~leaakaeLsel~~~vs~l~e~~ 201 (283)
.-.+.++--|..+..-+..|.+.++.-+. .++......+..+.+|+..-..|.+.+
T Consensus 41 ~~~~~~~~ei~~~~~~l~~l~~~~~~L~~-----~~~~~~~~i~~~~~~l~~~w~~l~~~~ 96 (105)
T PF00435_consen 41 KKHKELQEEIESRQERLESLNEQAQQLID-----SGPEDSDEIQEKLEELNQRWEALCELV 96 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHH-----cCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677788888888888888755 236666777888999988766666554
No 9
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=58.31 E-value=14 Score=28.09 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=32.9
Q ss_pred ccChHHHHHHHHHHHH---hCCC-CCCChh-----HHHhhhCC---CCCCHHHHHHhhhhhh
Q 023389 26 RWTADLHDRFVDAVTK---LGGP-DKATPK-----SVLRLMGL---KGLTLYHLKSHLQKYR 75 (283)
Q Consensus 26 rWT~eLH~rFV~AV~~---LGG~-~kAtPK-----~Il~lM~v---~gLT~~hVkSHLQKYR 75 (283)
+||++..+-||+.+-. .|.- ....+| .|.+.++- ..+|..||++|+...|
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk 62 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLK 62 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 5999999999988753 3433 233333 34554442 4468899999987544
No 10
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=55.79 E-value=49 Score=20.78 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=32.5
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 023389 26 RWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQK 73 (283)
Q Consensus 26 rWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQK 73 (283)
.||++=+..|+.++..+|- ..-+.|-+.|+ +=|...|+.|..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHHH
Confidence 4999999999999999992 33567777764 3577777776544
No 11
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=55.23 E-value=27 Score=29.30 Aligned_cols=27 Identities=48% Similarity=0.466 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 023389 139 QLEVQERLQMRIEAQGKYLQAILQKAQ 165 (283)
Q Consensus 139 QLEVQRhLQLRIEAQGKYLQsiLEKAq 165 (283)
|=|.-+.||.+|.+||+-|++|++.-+
T Consensus 65 QGEqIkel~~e~k~qgktL~~I~~~L~ 91 (102)
T PF01519_consen 65 QGEQIKELQVEQKAQGKTLQLILKTLQ 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455568899999999999999997543
No 12
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=53.30 E-value=56 Score=20.73 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=32.5
Q ss_pred cccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 023389 25 LRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQK 73 (283)
Q Consensus 25 lrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQK 73 (283)
-.||++=...|+.+|.++| . ..-+.|-+.|+ +=|...|+.+-..
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g-~--~~w~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYG-K--NNWEKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHcC--CCCHHHHHHHHHH
Confidence 4699999999999999998 1 23466666664 6677777766443
No 13
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=51.11 E-value=15 Score=28.54 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCC----hhHHHhhhCCCCC---CHHHHHHhhhhhh
Q 023389 29 ADLHDRFVDAVTKLGGPDKAT----PKSVLRLMGLKGL---TLYHLKSHLQKYR 75 (283)
Q Consensus 29 ~eLH~rFV~AV~~LGG~~kAt----PK~Il~lM~v~gL---T~~hVkSHLQKYR 75 (283)
-+|+.-|. +|..+||.+..+ =+.|.+.||++.- ...++|+|-.+|=
T Consensus 32 vdL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L 84 (93)
T smart00501 32 LDLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYL 84 (93)
T ss_pred CcHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHh
Confidence 47999998 599999987544 2578899999752 3567788888773
No 14
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=32.23 E-value=42 Score=25.32 Aligned_cols=22 Identities=23% Similarity=0.647 Sum_probs=19.3
Q ss_pred cccChHHHHHHHHHHHHhCCCC
Q 023389 25 LRWTADLHDRFVDAVTKLGGPD 46 (283)
Q Consensus 25 lrWT~eLH~rFV~AV~~LGG~~ 46 (283)
-++..|+|..|-+-|..|||..
T Consensus 36 ~kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 36 NKFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred hHhhHHHHHHHHHHHHHhcccc
Confidence 4688999999999999999853
No 15
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=31.65 E-value=2.5e+02 Score=30.97 Aligned_cols=50 Identities=32% Similarity=0.424 Sum_probs=39.9
Q ss_pred cchHHHHHhHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 023389 120 GPISEALKCQAEVQQRLQEQLE-------VQERLQMRIEAQGKYLQAILQKAQKSLS 169 (283)
Q Consensus 120 ~qI~EALr~QmEVQrrLhEQLE-------VQRhLQLRIEAQGKYLQsiLEKAqetLa 169 (283)
+.++.|.+-=...|.+|.|.|+ |+|-.|===+|=-+||+.+-|++++.-.
T Consensus 465 G~ls~A~~~Lr~AQe~L~eAL~~gAs~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~ 521 (820)
T PF13779_consen 465 GDLSDAERRLRAAQEALREALERGASDEEIARLMQELREAMQDYMQALAEQAQRNPQ 521 (820)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCcc
Confidence 4677777777789999999875 8888884446777999999999988765
No 16
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=31.05 E-value=29 Score=31.13 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=39.7
Q ss_pred cccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhh
Q 023389 17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76 (283)
Q Consensus 17 ~~~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl 76 (283)
..++....|||+..+-..+.+||..-- ..+-.++.. ...||+..|-+-||.|..
T Consensus 41 ~RTsAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~~ 94 (161)
T TIGR02894 41 NRTAAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLKT 94 (161)
T ss_pred cccHHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHHh
Confidence 345667999999999999999998654 122222211 267999999999999864
No 17
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=27.53 E-value=1.1e+02 Score=25.65 Aligned_cols=48 Identities=29% Similarity=0.506 Sum_probs=38.4
Q ss_pred CCCcccCh-HHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 023389 22 KPRLRWTA-DLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQK 73 (283)
Q Consensus 22 K~RlrWT~-eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQK 73 (283)
.+|||-++ ||+++-...+..-| ...|..|+.|++.|=|+.++-.-||+
T Consensus 35 ~~~fr~S~~el~~cslkvl~p~g----SPsk~LL~~~~~rg~Tv~~Ll~~L~~ 83 (97)
T cd08783 35 RGRFRLSCLDLEQCSLKVLEPEG----SPSRSLLKLLGERGCTVTELSEFLQA 83 (97)
T ss_pred CCccccCHHHHHHHHHHHhcCCC----CchHHHHHHHHHcCCcHHHHHHHHHH
Confidence 35888887 78777766665544 55689999999999999999888886
No 18
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=24.79 E-value=3.6e+02 Score=30.05 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=36.8
Q ss_pred cchHHHHHhHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 023389 120 GPISEALKCQAEVQQRLQEQL-------EVQERLQMRIEAQGKYLQAILQKAQKS 167 (283)
Q Consensus 120 ~qI~EALr~QmEVQrrLhEQL-------EVQRhLQLRIEAQGKYLQsiLEKAqet 167 (283)
+.++.|.+-=...|.+|.|-| ||.|-.|===+|=-+||+.+-|+|++.
T Consensus 496 G~ls~A~~~Lr~AQ~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~ 550 (851)
T TIGR02302 496 GDLSDAERRLRAAQDALKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNN 550 (851)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 456666655558999998866 588888844467779999999999876
No 19
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=24.50 E-value=2.7e+02 Score=26.48 Aligned_cols=66 Identities=27% Similarity=0.407 Sum_probs=43.3
Q ss_pred chHHHHHhHHHHHHHHHHHHHH---------HHHHHHhHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhHHHHhhhhhh
Q 023389 121 PISEALKCQAEVQQRLQEQLEV---------QERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFN 191 (283)
Q Consensus 121 qI~EALr~QmEVQrrLhEQLEV---------QRhLQLRIEAQGKYLQsiLEKAqetLa~~~~~~~~~~leaakaeLsel~ 191 (283)
.|..||.-=-+|+|.++.+||+ -..|+-++|..-|||...+.+=+...- .-..++|-+.+||-.+-
T Consensus 67 eLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky~~e~k-----~k~~sleK~qseLKKlR 141 (232)
T cd07646 67 ELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLTAALKKYQTEHR-----SKGESLEKCQAELKKLR 141 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 5677775555777777777664 457999999999999976665443332 13445566666655553
No 20
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=21.90 E-value=2.2e+02 Score=27.94 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=38.2
Q ss_pred chHHHHHhHHHHHHHHHHHH---HHHHHHHHhH---HHHHHHHHHHHHHHhh
Q 023389 121 PISEALKCQAEVQQRLQEQL---EVQERLQMRI---EAQGKYLQAILQKAQK 166 (283)
Q Consensus 121 qI~EALr~QmEVQrrLhEQL---EVQRhLQLRI---EAQGKYLQsiLEKAqe 166 (283)
.+.+|++||-|.+|+-.-++ |--|.+|+.+ |++.|||-+.-.+.++
T Consensus 158 ~V~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr 209 (301)
T KOG2620|consen 158 SVKRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQR 209 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHH
Confidence 78999999999999877554 5788899876 5899999998887654
No 21
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=21.53 E-value=3.5e+02 Score=25.73 Aligned_cols=65 Identities=20% Similarity=0.325 Sum_probs=45.1
Q ss_pred chHHHHHhHHHHHHHHHHHHH---------HHHHHHHhHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhHHHHhhhhh
Q 023389 121 PISEALKCQAEVQQRLQEQLE---------VQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTF 190 (283)
Q Consensus 121 qI~EALr~QmEVQrrLhEQLE---------VQRhLQLRIEAQGKYLQsiLEKAqetLa~~~~~~~~~~leaakaeLsel 190 (283)
.|..+|--=-||+|+++.||| +-..|.-.+|..-||+...+.+=+..-- .-..++|-+.++|--+
T Consensus 65 eLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq~E~k-----~k~dsLeK~~seLKK~ 138 (226)
T cd07645 65 ELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKRYQTEHK-----NKLDSLEKSQADLKKI 138 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 577777655688888888887 3457888999999999977766433222 2345566666666555
No 22
>PHA02827 hypothetical protein; Provisional
Probab=20.33 E-value=1.3e+02 Score=26.87 Aligned_cols=40 Identities=38% Similarity=0.457 Sum_probs=28.5
Q ss_pred HHHHHhCCCCCCChhHH--HhhhC--CCCCCHHHHHHhhhhhhhh
Q 023389 37 DAVTKLGGPDKATPKSV--LRLMG--LKGLTLYHLKSHLQKYRLG 77 (283)
Q Consensus 37 ~AV~~LGG~~kAtPK~I--l~lM~--v~gLT~~hVkSHLQKYRl~ 77 (283)
.+++.-||-+..+|.++ +.+|. +..=.+.||||-||. |+.
T Consensus 105 ~vAe~Wg~~~~p~~~s~~vl~lm~~ll~d~dl~~ik~~L~~-RL~ 148 (150)
T PHA02827 105 RAAEYWGGESSPTPASAKVLELLMELLTDNDISHVKSALII-RLK 148 (150)
T ss_pred HHHHHHCCCCCCchHHHHHHHHHHHHcChhhHHHHHHHHHH-HHh
Confidence 34566788888999877 66555 245558899999986 553
No 23
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=20.10 E-value=55 Score=22.88 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhh
Q 023389 31 LHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (283)
Q Consensus 31 LH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQ 72 (283)
|-+.||+-|+...-..+|... .++.|..+|++.|-
T Consensus 1 Lsde~I~~IN~~~~tWkAG~N-------F~~~~~~~ik~LlG 35 (41)
T PF08127_consen 1 LSDEFIDYINSKNTTWKAGRN-------FENTSIEYIKRLLG 35 (41)
T ss_dssp S-HHHHHHHHHCT-SEEE-----------SSB-HHHHHHCS-
T ss_pred CCHHHHHHHHcCCCcccCCCC-------CCCCCHHHHHHHcC
Confidence 457899999998866676653 36667777766654
Done!