Query 023389
Match_columns 283
No_of_seqs 193 out of 378
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 05:56:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 1.3E-29 4.6E-34 189.9 7.5 60 18-78 1-60 (64)
2 2yus_A SWI/SNF-related matrix- 89.0 1.5 5E-05 33.1 7.1 46 23-74 17-62 (79)
3 2yum_A ZZZ3 protein, zinc fing 86.6 1.2 4.3E-05 32.3 5.4 55 20-77 4-61 (75)
4 2cu7_A KIAA1915 protein; nucle 84.9 2.7 9.3E-05 30.5 6.4 51 21-77 6-56 (72)
5 2hzd_A Transcriptional enhance 84.6 1.5 5.1E-05 34.1 5.1 56 20-77 2-74 (82)
6 2xag_B REST corepressor 1; ami 83.1 2 6.8E-05 42.6 6.5 53 21-79 377-429 (482)
7 1x41_A Transcriptional adaptor 83.1 4.3 0.00015 28.4 6.7 50 21-75 5-54 (60)
8 2iw5_B Protein corest, REST co 78.9 3.3 0.00011 37.7 5.9 54 19-78 128-181 (235)
9 2cqq_A RSGI RUH-037, DNAJ homo 76.3 3.9 0.00013 30.4 4.8 46 24-75 8-56 (72)
10 3sjm_A Telomeric repeat-bindin 73.8 9.6 0.00033 27.4 6.2 51 17-70 4-54 (64)
11 2ba2_A D12_ORF131, hypothetica 72.4 9 0.00031 30.0 6.1 42 121-165 33-74 (85)
12 2cqr_A RSGI RUH-043, DNAJ homo 63.5 36 0.0012 25.2 7.7 50 23-75 17-67 (73)
13 2elk_A SPCC24B10.08C protein; 59.8 37 0.0013 23.5 6.8 48 24-75 9-56 (58)
14 3uun_A Dystrophin; triple heli 59.5 25 0.00087 25.7 6.3 62 138-201 40-101 (119)
15 2d9a_A B-MYB, MYB-related prot 59.2 35 0.0012 23.4 6.5 50 20-74 4-53 (60)
16 3uul_A Utrophin; spectrin repe 58.9 30 0.001 25.5 6.6 62 138-201 40-101 (118)
17 2yqk_A Arginine-glutamic acid 57.5 9.8 0.00034 27.2 3.5 46 19-69 4-49 (63)
18 1guu_A C-MYB, MYB proto-oncoge 55.5 32 0.0011 22.9 5.7 46 24-74 3-48 (52)
19 1ity_A TRF1; helix-turn-helix, 52.9 47 0.0016 23.5 6.5 53 19-74 5-57 (69)
20 2kes_A Synphilin-1; synphillin 47.0 18 0.00063 25.3 3.3 23 131-153 15-41 (48)
21 1gvd_A MYB proto-oncogene prot 44.0 62 0.0021 21.4 5.7 46 24-74 3-48 (52)
22 1wgx_A KIAA1903 protein; MYB D 44.0 32 0.0011 25.8 4.6 46 26-74 10-56 (73)
23 2dim_A Cell division cycle 5-l 43.2 77 0.0026 22.3 6.4 50 20-74 5-54 (70)
24 2eqr_A N-COR1, N-COR, nuclear 42.3 22 0.00074 25.0 3.2 45 20-70 8-52 (61)
25 4eef_G F-HB80.4, designed hema 40.1 11 0.00039 28.7 1.5 57 13-72 9-66 (74)
26 2da3_A Alpha-fetoprotein enhan 39.5 58 0.002 23.2 5.3 62 13-77 10-71 (80)
27 2cjj_A Radialis; plant develop 38.2 56 0.0019 25.2 5.3 49 24-77 8-59 (93)
28 2dmt_A Homeobox protein BARH-l 36.0 1.1E+02 0.0039 21.9 6.5 68 7-77 4-71 (80)
29 2li6_A SWI/SNF chromatin-remod 34.8 7.2 0.00025 30.9 -0.3 44 29-75 49-96 (116)
30 2lm1_A Lysine-specific demethy 31.7 18 0.00061 27.8 1.5 45 29-74 44-94 (107)
31 1m1j_B Fibrinogen beta chain; 30.4 2.5E+02 0.0084 27.6 9.6 66 130-200 131-197 (464)
32 3ok8_A Brain-specific angiogen 30.1 81 0.0028 28.2 5.6 42 121-162 72-122 (222)
33 1c20_A DEAD ringer protein; DN 29.0 21 0.00072 28.5 1.5 47 29-76 52-105 (128)
34 1w0t_A Telomeric repeat bindin 28.9 1.3E+02 0.0044 20.0 6.2 46 24-72 2-47 (53)
35 2eqy_A RBP2 like, jumonji, at 28.8 26 0.00088 28.0 2.0 46 29-75 42-93 (122)
36 2jrz_A Histone demethylase jar 27.1 23 0.0008 28.0 1.5 45 29-74 40-90 (117)
37 2cxy_A BAF250B subunit, HBAF25 26.7 24 0.00084 28.1 1.5 45 29-74 51-101 (125)
38 1kkx_A Transcription regulator 26.2 17 0.00059 29.3 0.5 46 29-77 48-97 (123)
39 2aje_A Telomere repeat-binding 25.8 1.4E+02 0.0048 23.6 5.8 53 19-77 8-62 (105)
40 2crg_A Metastasis associated p 25.7 62 0.0021 23.5 3.4 46 21-71 5-50 (70)
41 2jxj_A Histone demethylase jar 24.4 25 0.00086 26.5 1.1 45 29-74 36-86 (96)
42 3lbx_A Spectrin alpha chain, e 23.1 2.9E+02 0.0099 22.1 7.9 52 144-200 98-149 (161)
43 2g7r_A Mucosa-associated lymph 22.4 32 0.0011 28.3 1.4 50 20-73 53-103 (117)
44 1gv2_A C-MYB, MYB proto-oncoge 20.5 2.1E+02 0.0072 21.2 5.7 46 24-74 4-49 (105)
45 3f31_A Spectrin alpha chain, b 20.2 2.4E+02 0.0081 22.2 6.2 52 144-200 88-139 (149)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.96 E-value=1.3e-29 Score=189.87 Aligned_cols=60 Identities=45% Similarity=0.793 Sum_probs=57.4
Q ss_pred ccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhh
Q 023389 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQ 78 (283)
Q Consensus 18 ~~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~ 78 (283)
++++|||++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+..
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999 7999999999999999999999999999999974
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=89.01 E-value=1.5 Score=33.13 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=38.6
Q ss_pred CCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023389 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (283)
Q Consensus 23 ~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (283)
.+-.||+|=+.+|++||..+|+ .=+.|-+.|+ +=|..+++.|-++|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence 4678999999999999999993 3467777764 78999999998876
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.64 E-value=1.2 Score=32.33 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=41.3
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCCh---hHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023389 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATP---KSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (283)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtP---K~Il~lM~v~gLT~~hVkSHLQKYRl~ 77 (283)
+...+-.||+|=+.+|+++|..+| .+...| +.|-+.| +|=|..+|+.|-++|-..
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 344556899999999999999999 333223 3455554 689999999999998654
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=84.90 E-value=2.7 Score=30.46 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=41.3
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023389 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (283)
Q Consensus 21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~ 77 (283)
...+-.||+|=+..|+++|..+|- .=..|-..| +|=|-.+|+.|-++|-..
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 345678999999999999999992 456676654 789999999999988543
No 5
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=84.61 E-value=1.5 Score=34.10 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=36.0
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhh---h-C-------------CCCCCHHHHHHhhhhhhhh
Q 023389 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRL---M-G-------------LKGLTLYHLKSHLQKYRLG 77 (283)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~l---M-~-------------v~gLT~~hVkSHLQKYRl~ 77 (283)
+++..-+|.++|-..|++|+...-=....+ -+|.. | | -+-=|..+|.||||.-|..
T Consensus 2 d~~~e~vW~~~lE~aF~eaL~~yp~~g~~k--~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 2 DNDAEGVWSPDIEQSFQEALSIYPPCGRRK--IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp CGGGSCCSCHHHHHHHHHHHHHSCSSSCCC--CCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CCCcCCcCCHHHHHHHHHHHHHcCCCCccc--eeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHH
Confidence 345566899999999999999776111222 22211 1 1 0334677899999986654
No 6
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=83.13 E-value=2 Score=42.60 Aligned_cols=53 Identities=25% Similarity=0.405 Sum_probs=44.8
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023389 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ 79 (283)
Q Consensus 21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~ 79 (283)
.+..-+||++=|..|++|+.+.| + .=+.|-+.++-. |..+|++|-++||....
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yG---k-dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYG---R-DFQAISDVIGNK--SVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT---T-CHHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHC---c-CHHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence 35578999999999999999998 2 477888887765 89999999999987544
No 7
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=83.09 E-value=4.3 Score=28.45 Aligned_cols=50 Identities=24% Similarity=0.212 Sum_probs=38.7
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 023389 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75 (283)
Q Consensus 21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYR 75 (283)
+..|-.||+|=..+|++||..+| . ..=+.|-+.| ++=|-.+++.|-++|-
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYF 54 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHc
Confidence 44566899999999999999999 1 1245676666 6788889988877763
No 8
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=78.92 E-value=3.3 Score=37.74 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=44.5
Q ss_pred cCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhh
Q 023389 19 RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQ 78 (283)
Q Consensus 19 ~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~ 78 (283)
...+..-+||+|=+..|++|+...|- .=..|-++ |++=|..+|++|-.+||...
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHh
Confidence 34466779999999999999999992 36778777 56789999999999998553
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=76.32 E-value=3.9 Score=30.39 Aligned_cols=46 Identities=15% Similarity=0.393 Sum_probs=36.4
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhH---HHhhhCCCCCCHHHHHHhhhhhh
Q 023389 24 RLRWTADLHDRFVDAVTKLGGPDKATPKS---VLRLMGLKGLTLYHLKSHLQKYR 75 (283)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~---Il~lM~v~gLT~~hVkSHLQKYR 75 (283)
+-.||.|=+..|..|+..+++ -||.+ |-..| |=|..+|+.|-+++.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 447999999999999999983 46654 55565 579999999977653
No 10
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=73.83 E-value=9.6 Score=27.36 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=35.8
Q ss_pred cccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHh
Q 023389 17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 70 (283)
Q Consensus 17 ~~~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSH 70 (283)
+++..+.|-.||+|=-+..+++|...|. -.=+.|.+.++.+|=|-.+++.+
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~R 54 (64)
T 3sjm_A 4 MTTNITKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDR 54 (64)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHH
Confidence 3445556778999999999999999992 13567888777777787777643
No 11
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=72.42 E-value=9 Score=30.04 Aligned_cols=42 Identities=36% Similarity=0.413 Sum_probs=30.5
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 023389 121 PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQ 165 (283)
Q Consensus 121 qI~EALr~QmEVQrrLhEQLEVQRhLQLRIEAQGKYLQsiLEKAq 165 (283)
-|.+.+..|-|-=+.--||+ +.||+-+.|||+-|+.||+--+
T Consensus 33 kie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL~ 74 (85)
T 2ba2_A 33 VVMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEALQ 74 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777666444434554 8899999999999999997543
No 12
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=63.55 E-value=36 Score=25.18 Aligned_cols=50 Identities=6% Similarity=0.054 Sum_probs=38.8
Q ss_pred CCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhh-CCCCCCHHHHHHhhhhhh
Q 023389 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLM-GLKGLTLYHLKSHLQKYR 75 (283)
Q Consensus 23 ~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM-~v~gLT~~hVkSHLQKYR 75 (283)
.+-.||++=...|+.||..+| +-+|..--.+= -|||=|-.+|+.|-+.+.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g---~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYP---RGSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSC---SSSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345699999999999999998 23786554432 357999999999988654
No 13
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=59.80 E-value=37 Score=23.48 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=35.2
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 023389 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75 (283)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYR 75 (283)
+-.||++=+.+++++|...| . ..=+.|-+.|+. +=|-.+++.|-++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G-~--~~W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLG-L--GNWADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTT-T--TCHHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 44699999999999999999 1 233566666531 667888888877653
No 14
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=59.52 E-value=25 Score=25.71 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhHHHHhhhhhhhhhhhHhhhc
Q 023389 138 EQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESM 201 (283)
Q Consensus 138 EQLEVQRhLQLRIEAQGKYLQsiLEKAqetLa~~~~~~~~~~leaakaeLsel~~~vs~l~e~~ 201 (283)
.||+-.+.|+--|+++..-+.+|.+.+++-+.. ....+......+..|.+++..-..|...+
T Consensus 40 ~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~--~~~~~~~~~~i~~~l~~l~~rw~~L~~~~ 101 (119)
T 3uun_A 40 DQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGT--GKLSEDEETEVQEQMNLLNSRWECLRVAS 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555677778899999999999999988873 11223334445778888887666665544
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=59.24 E-value=35 Score=23.42 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=36.3
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023389 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (283)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (283)
+...|-.||+|=.++++++|.++|- ..=..|-+.| +|=|-.+++.|-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 3456778999999999999999981 1235555554 577777887766554
No 16
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=58.94 E-value=30 Score=25.45 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhHHHHhhhhhhhhhhhHhhhc
Q 023389 138 EQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESM 201 (283)
Q Consensus 138 EQLEVQRhLQLRIEAQGKYLQsiLEKAqetLa~~~~~~~~~~leaakaeLsel~~~vs~l~e~~ 201 (283)
+||.-.+.|+--|.++..-+.+|.+.+++-+.. ...++......+..|.+++..-..|+..+
T Consensus 40 ~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~--~~~~~~~~~~i~~~l~~l~~rw~~L~~~~ 101 (118)
T 3uul_A 40 EQFATHETFMMELSAHQSSVGSVLQAGNQLMTQ--GTLSDEEEFEIQEQMTLLNARWEALRVES 101 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777899999999999999998873 11223333445788888888766666544
No 17
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.51 E-value=9.8 Score=27.17 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=32.1
Q ss_pred cCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHH
Q 023389 19 RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKS 69 (283)
Q Consensus 19 ~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkS 69 (283)
++...+-.||++=|..|.+|+...| - .=..|-+.| |+.=|..+|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-K---df~~I~~~~-v~~Kt~~~~v~ 49 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-K---NFFRIRKEL-LPNKETGELIT 49 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-S---CHHHHHHHS-CTTSCHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-c---cHHHHHHHH-cCCCcHHHHHH
Confidence 4445567999999999999999999 2 244554411 46667777653
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=55.49 E-value=32 Score=22.86 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=34.8
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023389 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (283)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (283)
|-.||+|=...++++|..+|. ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999982 2345666665 577888887776554
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=52.90 E-value=47 Score=23.48 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=40.0
Q ss_pred cCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023389 19 RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (283)
Q Consensus 19 ~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (283)
...++|-.||+|=....+++|..+|. -.=..|...|+..|=|-.+++.+-..|
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 34567889999999999999999991 134677777765477888887665544
No 20
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=46.98 E-value=18 Score=25.34 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=16.7
Q ss_pred HHHHHHHHH----HHHHHHHHHhHHHH
Q 023389 131 EVQQRLQEQ----LEVQERLQMRIEAQ 153 (283)
Q Consensus 131 EVQrrLhEQ----LEVQRhLQLRIEAQ 153 (283)
.+-|+|+|| +-+|.+||.-+|+|
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~ 41 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQ 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345677776 45788888888887
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=43.97 E-value=62 Score=21.44 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=33.4
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023389 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (283)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (283)
+-.||+|=...++++|.+.|. ..=..|-..| +|=|-.+++.|-..|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999982 1234555554 577778887766554
No 22
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=43.95 E-value=32 Score=25.78 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=35.9
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChhHHHhh-hCCCCCCHHHHHHhhhhh
Q 023389 26 RWTADLHDRFVDAVTKLGGPDKATPKSVLRL-MGLKGLTLYHLKSHLQKY 74 (283)
Q Consensus 26 rWT~eLH~rFV~AV~~LGG~~kAtPK~Il~l-M~v~gLT~~hVkSHLQKY 74 (283)
.||.+=..+|..|+..++ +.+|-+--.+ .-|+|=|.+.|+.|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 599999999999999987 4588765543 336889999988776554
No 23
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.17 E-value=77 Score=22.33 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=36.9
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023389 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (283)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (283)
+...|=.||+|=.++++++|..+|- ..=+.|-..|+ +=|-.+++.|-..|
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 3446678999999999999999981 23466766664 77778887666554
No 24
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.35 E-value=22 Score=25.01 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=34.1
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHh
Q 023389 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 70 (283)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSH 70 (283)
..+..-.||++=|..|++|+...| . .=..|-.+ +|+=|..+|..|
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g--k--~w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP--K--NFGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST--T--CHHHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC--C--CHHHHHHH--cCCCCHHHHHHH
Confidence 445667899999999999999998 2 34566655 467788877644
No 25
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=40.08 E-value=11 Score=28.74 Aligned_cols=57 Identities=23% Similarity=0.264 Sum_probs=35.4
Q ss_pred CccccccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhC-CCCCCHHHHHHhhh
Q 023389 13 NGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMG-LKGLTLYHLKSHLQ 72 (283)
Q Consensus 13 ~g~v~~~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~-v~gLT~~hVkSHLQ 72 (283)
.|..++...-.--.||.+=...|..|+.... +-||.+--++-. |||=|...|+.|-|
T Consensus 9 ~~~~m~s~~~ss~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 9 KGSHMASTRGSGRPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -------------CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred ccceeccCCCCCCCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3433333333344699999999999998885 567866544332 68999999999876
No 26
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=39.51 E-value=58 Score=23.16 Aligned_cols=62 Identities=19% Similarity=0.143 Sum_probs=41.8
Q ss_pred CccccccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023389 13 NGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (283)
Q Consensus 13 ~g~v~~~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~ 77 (283)
.+....+.+++|-++|++--. .++.+.... ...++..+.++...-|||..+|+.=.|.-|..
T Consensus 10 ~~~~~~~~rr~Rt~ft~~Ql~-~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 71 (80)
T 2da3_A 10 GGEEPQRDKRLRTTITPEQLE-ILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRAR 71 (80)
T ss_dssp CCCCCCCCTTCCSSCCTTTHH-HHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHH-HHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHh
Confidence 344456677788888987433 344444443 35666666676666789999999988886654
No 27
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=38.20 E-value=56 Score=25.24 Aligned_cols=49 Identities=27% Similarity=0.349 Sum_probs=37.9
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhH---HHhhhCCCCCCHHHHHHhhhhhhhh
Q 023389 24 RLRWTADLHDRFVDAVTKLGGPDKATPKS---VLRLMGLKGLTLYHLKSHLQKYRLG 77 (283)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~---Il~lM~v~gLT~~hVkSHLQKYRl~ 77 (283)
.-.||+|=...|..|+..+| +-+|.+ |-.. |||=|-.+|+.|-+.+...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~---~~~~~rW~~IA~~--vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYD---KDTPDRWANVARA--VEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSC---TTCTTHHHHHHHH--STTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 34699999999999999998 236654 4444 4799999999998876544
No 28
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.01 E-value=1.1e+02 Score=21.85 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=45.6
Q ss_pred CCCCCCCccccccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023389 7 VSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (283)
Q Consensus 7 ~~~~~~~g~v~~~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~ 77 (283)
|+.+++.|....+..++|.++|++-......+. ..- ...++..+.++...-|||..+|+.=.|.-|..
T Consensus 4 ~~~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F-~~~--~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 71 (80)
T 2dmt_A 4 GSSGGEPGTKAKKGRRSRTVFTELQLMGLEKRF-EKQ--KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMK 71 (80)
T ss_dssp CCCCCCSCCCCCCCCCSCCCCCHHHHHHHHHHH-HHC--SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-Hhc--CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHH
Confidence 344445556666778889999987544433333 333 35666777777777789999999988876654
No 29
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=34.82 E-value=7.2 Score=30.87 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCCHHHHHHhhhhhh
Q 023389 29 ADLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLTLYHLKSHLQKYR 75 (283)
Q Consensus 29 ~eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gLT~~hVkSHLQKYR 75 (283)
-+|+.-|.. |..+||.++.+. +.|.+.||++. ...+++|-.||=
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L 96 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRIL 96 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHH
Confidence 478887765 789999887654 57889999987 466777766663
No 30
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=31.65 E-value=18 Score=27.84 Aligned_cols=45 Identities=24% Similarity=0.214 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhh
Q 023389 29 ADLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLT--LYHLKSHLQKY 74 (283)
Q Consensus 29 ~eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gLT--~~hVkSHLQKY 74 (283)
-+||.-|.. |..+||.++.+- +.|.+.||+|.-| ...++.|-.||
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 578888876 778999987654 4678899997632 24566665555
No 31
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=30.38 E-value=2.5e+02 Score=27.61 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-hhcccCCCCCCCcchhHHHHhhhhhhhhhhhHhhh
Q 023389 130 AEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQ-KSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMES 200 (283)
Q Consensus 130 mEVQrrLhEQLEVQRhLQLRIEAQGKYLQsiLEKAq-etLa~~~~~~~~~~leaakaeLsel~~~vs~l~e~ 200 (283)
.+-|+++.+..++=......||.|-+|++.++.... ..+.. ...-++.-+..+..|..+|..+++.
T Consensus 131 k~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~-----L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 131 VKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRV-----LRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888888899999999998876432 22321 1122344555566666666555543
No 32
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=30.15 E-value=81 Score=28.22 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=33.8
Q ss_pred chHHHHHhHHHHHHHHHHHHHH---------HHHHHHhHHHHHHHHHHHHH
Q 023389 121 PISEALKCQAEVQQRLQEQLEV---------QERLQMRIEAQGKYLQAILQ 162 (283)
Q Consensus 121 qI~EALr~QmEVQrrLhEQLEV---------QRhLQLRIEAQGKYLQsiLE 162 (283)
.|.+||.-=-|+||+|..+||. -.+|+.+||.-.||++....
T Consensus 72 eLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K 122 (222)
T 3ok8_A 72 ILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQ 122 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888886556889999888774 57899999999999985543
No 33
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=29.03 E-value=21 Score=28.54 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCC-C--HHHHHHhhhhhhh
Q 023389 29 ADLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGL-T--LYHLKSHLQKYRL 76 (283)
Q Consensus 29 ~eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gL-T--~~hVkSHLQKYRl 76 (283)
-+||.-|.. |..+||.++.+- +.|.+.||++.- | ...+++|-.||=+
T Consensus 52 vDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~ 105 (128)
T 1c20_A 52 LDLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLY 105 (128)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTH
T ss_pred ecHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 478888876 789999887654 578889998752 2 4567777766633
No 34
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=28.93 E-value=1.3e+02 Score=20.02 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=34.0
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhh
Q 023389 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (283)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQ 72 (283)
|-.||+|=.+..+++|...|. ..=+.|.+.|+..|=|-.+++.+-.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~ 47 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWR 47 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHH
Confidence 457999999999999999991 1346777777644667777765433
No 35
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.83 E-value=26 Score=27.98 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhhh
Q 023389 29 ADLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLT--LYHLKSHLQKYR 75 (283)
Q Consensus 29 ~eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gLT--~~hVkSHLQKYR 75 (283)
-+|+.-|.. |..+||.++.+- +.|.+.|+++.-+ ..++++|=.||=
T Consensus 42 lDLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L 93 (122)
T 2eqy_A 42 LDLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL 93 (122)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH
T ss_pred ccHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 478888875 889999887654 5788899997533 246677666663
No 36
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=27.08 E-value=23 Score=27.96 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhh
Q 023389 29 ADLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLT--LYHLKSHLQKY 74 (283)
Q Consensus 29 ~eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gLT--~~hVkSHLQKY 74 (283)
-+|+.-|.. |..+||.++.+- +.|.+.||+|.-| ..++++|-.||
T Consensus 40 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 40 LDLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred ecHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 378888875 788999886654 5788899997433 34667776666
No 37
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=26.66 E-value=24 Score=28.11 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhh
Q 023389 29 ADLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLT--LYHLKSHLQKY 74 (283)
Q Consensus 29 ~eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gLT--~~hVkSHLQKY 74 (283)
-+||..|.. |..+||.++.+- +.|.+.|+++.-| ...++.|-.||
T Consensus 51 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 51 LDLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp CCHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 478888875 789999986654 4788899998642 23556655555
No 38
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=26.23 E-value=17 Score=29.25 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023389 29 ADLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (283)
Q Consensus 29 ~eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gLT~~hVkSHLQKYRl~ 77 (283)
-+|+..|.. |..+||.++.+. +.|.+.|++|. -..+++|-.||=+.
T Consensus 48 lDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 48 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLP 97 (123)
T ss_dssp CCTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHHH
Confidence 467777765 899999988776 56788999987 66777777766443
No 39
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=25.82 E-value=1.4e+02 Score=23.56 Aligned_cols=53 Identities=23% Similarity=0.174 Sum_probs=39.9
Q ss_pred cCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhC--CCCCCHHHHHHhhhhhhhh
Q 023389 19 RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMG--LKGLTLYHLKSHLQKYRLG 77 (283)
Q Consensus 19 ~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~--v~gLT~~hVkSHLQKYRl~ 77 (283)
...++|-.||+|=-+..+++|..+|. -.=+.|++.+. .++=|--++|. |||..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKd---rWrnl 62 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKD---KWKTL 62 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHH---HHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHH---HHHHH
Confidence 46778999999999999999999993 13457777553 37888888886 45554
No 40
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=25.72 E-value=62 Score=23.46 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=32.7
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhh
Q 023389 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71 (283)
Q Consensus 21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHL 71 (283)
.+..-.||++=|..|.+|+...| -+ -..|-+.| ||.-|..+|..+-
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYG-KD---FNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCCHHHHHHHH
Confidence 35566899999999999999999 22 45555411 5677777776543
No 41
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=24.42 E-value=25 Score=26.47 Aligned_cols=45 Identities=27% Similarity=0.138 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhh
Q 023389 29 ADLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLT--LYHLKSHLQKY 74 (283)
Q Consensus 29 ~eLH~rFV~AV~~LGG~~kAtP----K~Il~lM~v~gLT--~~hVkSHLQKY 74 (283)
-+|+.-|.. |..+||.++.+- +.|.+.|+++.-+ ...++.|=.||
T Consensus 36 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 36 LDLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp CCCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred ccHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 367777765 788999987654 5778899986533 34556665555
No 42
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=23.13 E-value=2.9e+02 Score=22.09 Aligned_cols=52 Identities=10% Similarity=0.309 Sum_probs=38.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhHHHHhhhhhhhhhhhHhhh
Q 023389 144 ERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMES 200 (283)
Q Consensus 144 RhLQLRIEAQGKYLQsiLEKAqetLa~~~~~~~~~~leaakaeLsel~~~vs~l~e~ 200 (283)
+.++--|+|+...++.|.+.+++-+.. .+...+..+..|.+|+..-..|.+.
T Consensus 98 ~afe~El~a~~~~~~~l~~~g~~Li~~-----~~~~~~~I~~rl~eL~~~W~~L~~~ 149 (161)
T 3lbx_A 98 QSLEAEVQTKSRLMSELEKTREERFTM-----GHSAHEETKAHIEELRHLWDLLLEL 149 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCT-----TCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHHHHHH
Confidence 455556889999999999999988883 3445566788888887765555544
No 43
>2g7r_A Mucosa-associated lymphoid tissue lymphoma transl protein 1; death domain, chromosomal translocation, hydrolase; 2.70A {Homo sapiens}
Probab=22.43 E-value=32 Score=28.31 Aligned_cols=50 Identities=32% Similarity=0.472 Sum_probs=36.4
Q ss_pred CCCCCcccCh-HHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 023389 20 DPKPRLRWTA-DLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQK 73 (283)
Q Consensus 20 ~~K~RlrWT~-eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQK 73 (283)
.-+.|+|-++ +|+.+=+..+++-| ...+..|..|++.|.|+.++-.-||.
T Consensus 53 ~~~~~fr~S~~~l~~cslkvle~~g----SPSr~LL~~~~~~g~Tl~~L~~~Lq~ 103 (117)
T 2g7r_A 53 GSRGRLRLSCLDLEQCSLKVLEPEG----SPSLCLLKLMGEKGCTVTELSDFLQA 103 (117)
T ss_dssp C------CCHHHHHHHHGGGGSTTC----CHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccccccccChHHhhhhhhhhhccCC----ChHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3458888888 88888877776665 44588899999999999999999986
No 44
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=20.49 E-value=2.1e+02 Score=21.24 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=34.2
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023389 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (283)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY 74 (283)
+-.||+|=..+++.+|...|. -.=+.|-..| ||=|..+++.|-..|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 457999999999999999983 1234566665 677888887665554
No 45
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=20.23 E-value=2.4e+02 Score=22.16 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=38.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhHHHHhhhhhhhhhhhHhhh
Q 023389 144 ERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMES 200 (283)
Q Consensus 144 RhLQLRIEAQGKYLQsiLEKAqetLa~~~~~~~~~~leaakaeLsel~~~vs~l~e~ 200 (283)
+.++--|+++...++.|.+.+++-+.. ++.+.+..+..|.+++..-..|.+.
T Consensus 88 ~afe~El~a~~~~l~~v~~~g~~Li~~-----~~~~~~~I~~rl~~l~~~W~~L~~~ 139 (149)
T 3f31_A 88 QAFEAEVQANSGAIVKLDETGNLMISE-----GHFASETIRTRLMELHRQWELLLEK 139 (149)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHH-----TCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 456667889999999999999988883 3455666788888888765555544
Done!