BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023390
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
pdb|1PXZ|B Chain B, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
Length = 346
Score = 246 bits (627), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 123/237 (51%), Positives = 163/237 (68%), Gaps = 13/237 (5%)
Query: 54 NPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRY 113
NPID CWR D W++NR +LADCA+GFG +GGK G Y VT S DD+PVNP PGTLRY
Sbjct: 2 NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVT-STDDNPVNPTPGTLRY 60
Query: 114 AVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIA-GGPCITVQYVTNIIIHG 172
+++ LWIIF+++M I LK L + KTIDGRGA VH+ GGPC+ ++ V+++I+H
Sbjct: 61 GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 173 INIHDCKRG--GNANVRDS----PSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGL 226
++IH C G+ V +S P H DGD +++ ++ W+DH SLS+C+DGL
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGL 175
Query: 227 IDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPR 283
ID GST ITISNN+ +H+KVMLLGH DT+ DK+M+VT+AFN FG QRMPR
Sbjct: 176 IDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPR 232
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The
Pectate Lyase From Thermotoga Maritima
Length = 340
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 34/222 (15%)
Query: 73 LADCAIGFG--------KQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWII 124
L D +GF + +GG G+I V + + + G +Y ++ D +
Sbjct: 2 LNDKPVGFASVPTADLPEGTVGGLGGEIVFVRTAEELEKYTTAEG--KYVIVVDGTI--- 56
Query: 125 FARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNA 184
V K E+ + S KTI G + + GG + ++ N+II I+
Sbjct: 57 -----VFEPKREIKVLSDKTIVGINDAKIVGGG--LVIKDAQNVIIRNIHFEGFY----- 104
Query: 185 NVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMT 244
+ D P + D D +++ H+W+DH + N NDG +D S IT+S N
Sbjct: 105 -MEDDPRGKKY----DFDYINVENSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFV 159
Query: 245 HHNKVMLLGHSDTFTQDKNMQ---VTIAFNHFGEGLVQRMPR 283
H+KV L+G SD ++ Q VT N+F + L+QRMPR
Sbjct: 160 DHDKVSLVGSSDKEDPEQAGQAYKVTYHHNYF-KNLIQRMPR 200
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase
Length = 420
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 19/100 (19%)
Query: 202 DGVSIFGGSHVWVDHCSLSNCN-----------------DGLIDAIHGSTAITISNNYMT 244
D ++I GG+H+W+DHC+ ++ + DG DA +G+ IT+S NY
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 245 HHNKVMLLGHSDTFTQDK-NMQVTIAFNHFGEGLVQRMPR 283
H+K + G SD+ T D +++T+ N + + +VQR PR
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPR 303
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant
Length = 420
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 19/100 (19%)
Query: 202 DGVSIFGGSHVWVDHCSLSNCN-----------------DGLIDAIHGSTAITISNNYMT 244
D ++I GG+H+W+DHC+ ++ + DG DA +G+ IT+S NY
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 245 HHNKVMLLGHSDTFTQDK-NMQVTIAFNHFGEGLVQRMPR 283
H+K + G SD+ T D +++T+ N + + +VQ+ PR
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQKAPR 303
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The
Anti Beta-Elimination Mechanism Of Pectate Lyase
Length = 399
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 19/100 (19%)
Query: 202 DGVSIFGGSHVWVDHCSLSNCN-----------------DGLIDAIHGSTAITISNNYMT 244
D ++I GG+H+W+DHC+ ++ + DG DA +G+ IT+S NY
Sbjct: 184 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243
Query: 245 HHNKVMLLGHSDTFTQDK-NMQVTIAFNHFGEGLVQRMPR 283
H+ + G SD+ T D +++T+ N + + +VQR PR
Sbjct: 244 DHDASSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPR 282
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 19/103 (18%)
Query: 199 SDGDGVSIFGGSHVWVDHCSLSNCN-----------------DGLIDAIHGSTAITISNN 241
S+ D +SI G SH+W+DH + ++ + DG +D + S ITIS N
Sbjct: 187 SEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYN 246
Query: 242 YMTHHNKVMLLGHSDTFTQDK-NMQVTIAFNHFGEGLVQRMPR 283
T+H+KV L+G SD+ D +++VT+ N++ + + QR+PR
Sbjct: 247 VFTNHDKVTLIGASDSRMADSGHLRVTLHHNYY-KNVTQRLPR 288
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase
pdb|2O04|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Ii
pdb|2O0V|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iii
pdb|2O0W|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iv
pdb|2O17|A Chain A, Pectate Lyase Bound To Hexasaccharide
pdb|2O1D|A Chain A, Pectate Lyase Bound To Trisaccharide
Length = 399
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 19/100 (19%)
Query: 202 DGVSIFGGSHVWVDHCSLSNCN-----------------DGLIDAIHGSTAITISNNYMT 244
D ++I GG+H+W+DHC+ ++ + DG DA +G+ IT+S NY
Sbjct: 184 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243
Query: 245 HHNKVMLLGHSDTFTQDK-NMQVTIAFNHFGEGLVQRMPR 283
H+K + G SD+ T D +++T+ N + + +VQ PR
Sbjct: 244 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQAAPR 282
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1OOC|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
Length = 361
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 25/119 (21%)
Query: 188 DSPSHY----GWRTISDGDGVSIFGGSH-VWVDHCSLSNCN-----------------DG 225
D HY GW ++ D ++I G+H VW+DH ++S+ N DG
Sbjct: 128 DVEPHYEKGDGWN--AEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDG 185
Query: 226 LIDAIHGSTAITISNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFGEGLVQRMPR 283
+D GS +TISN+ + H+K ML+GHSD+ +QDK FN+ + +R PR
Sbjct: 186 ALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPR 244
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JRG|B Chain B, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JTA|A Chain A, Crystal Structure Of Pectate Lyase A (C2 Form)
Length = 361
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 25/119 (21%)
Query: 188 DSPSHY----GWRTISDGDGVSIFGGSH-VWVDHCSLSNCN-----------------DG 225
D HY GW ++ D ++I G+H VW+DH ++S+ N DG
Sbjct: 128 DVEPHYEKGDGWN--AEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDG 185
Query: 226 LIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFGEGLVQRMPR 283
+D GS +TISN+ + H+K ML+GH+DT + QDK FN+ + +R PR
Sbjct: 186 ALDIKRGSDYVTISNSLIDQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPR 244
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
Length = 330
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 17/99 (17%)
Query: 200 DGDGVSIFGGS-----HVWVDH----CSLSNCN-------DGLIDAIHGSTAITISNNYM 243
D D +S+ G S +WVDH SL+ C+ DG ID G +T+S NY+
Sbjct: 112 DADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYV 171
Query: 244 THHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMP 282
++ KV L G+SD+ T++ + T N F E + R+P
Sbjct: 172 YNYQKVALNGYSDSDTKNSAARTTYHHNRF-ENVESRVP 209
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
Length = 330
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 17/99 (17%)
Query: 200 DGDGVSIFGGS-----HVWVDH----CSLSNCN-------DGLIDAIHGSTAITISNNYM 243
D D +S+ G S +WVDH SL+ C+ DG ID G +T+S NY+
Sbjct: 112 DADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYV 171
Query: 244 THHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMP 282
++ KV L G+SD+ T++ + T N F E + R+P
Sbjct: 172 YNYQKVALNGYSDSDTKNSAARTTYHHNRF-ENVESRVP 209
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
Length = 330
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 17/99 (17%)
Query: 200 DGDGVSIFGGS-----HVWVDH----CSLSNCN-------DGLIDAIHGSTAITISNNYM 243
D D +S+ G S +WVDH SL+ C+ DG ID G +T+S NY+
Sbjct: 112 DADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYV 171
Query: 244 THHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMP 282
++ KV L G+SD+ T++ + T N F E + R+P
Sbjct: 172 YNYQKVALNGYSDSDTKNSAARTTYHHNRF-ENVESRVP 209
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In
Pectate Lyases
Length = 355
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 33/172 (19%)
Query: 134 KEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHY 193
+ ++ + S TI G G++ G + ++ V N+I+ + I D HY
Sbjct: 73 RSQISIPSNTTIIGVGSNGKFTNGSLV-IKGVKNVILRNLYIE--------TPVDVAPHY 123
Query: 194 ----GWRTISDGDGVSIFGGSHVWVDHCSLSNCN-----------------DGLIDAIHG 232
GW ++ D I ++VWVDH ++S+ + DG +D G
Sbjct: 124 ESGDGWN--AEWDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKG 181
Query: 233 STAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAF-NHFGEGLVQRMPR 283
S +TIS + H+K +L+GHSD+ + ++ + F N+ + + +R PR
Sbjct: 182 SDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPR 233
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165
pdb|3VMW|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165 In Complex With Trigalacturonate
Length = 326
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 34/138 (24%)
Query: 157 GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGS-HVWVD 215
G I + NIII ++IH + G +G + + S +VW+D
Sbjct: 94 GIGIRLSNAHNIIIQNVSIHHVREG------------------EGTAIEVTDDSKNVWID 135
Query: 216 HCSL---------SNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSD--TFTQDKNM 264
H S+ DGL+D + IT+S N +H K ML+GH+D + DK
Sbjct: 136 HNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVGHTDNASLAPDK-- 193
Query: 265 QVTIAFNHFGEGLVQRMP 282
+T N+F L R+P
Sbjct: 194 -ITYHHNYF-NNLNSRVP 209
>pdb|1ZB7|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type G Light
Chain
Length = 455
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 145 IDGRGASVHIAG-GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYG-WRTISDGD 202
I G ++ I G GP ++ + ++I++G + G +R PS + + +
Sbjct: 151 IKGLMTNLIIFGPGPVLSDNFTDSMIMNGHSPISEGFGARMMIRFCPSCLNVFNNVQENK 210
Query: 203 GVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSD 256
SIF + D +L+ ++ LI +HG I ISN +T + K + HSD
Sbjct: 211 DTSIFSRRAYFAD-PALTLMHE-LIHVLHGLYGIKISNLPITPNTKEFFMQHSD 262
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion
In The Putative Calcium Binding Site
pdb|1O88|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
30mm Ca2+
pdb|1O8D|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
5mm Ca2+
pdb|1O8E|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
1mm Ca2+
pdb|1O8F|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
30mm Ca2+
pdb|1O8G|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
5mm Ca2+
pdb|1O8H|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
0.3mm Ca2+ Added
pdb|1O8I|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
No Ca2+ Added
pdb|1O8J|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
30mm Ca2+
pdb|1O8K|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
20mm Ca2+
pdb|1O8L|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
5mm Ca2+
pdb|1O8M|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
No Ca2+ Added
pdb|1AIR|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi (Ec16) To A
Resolution Of 2.2 Angstroms With 128 Waters
pdb|2PEC|A Chain A, The Refined Three-Dimensional Structure Of Pectate Lyase C
From Erwinia Chrysanthemi At 2.2 Angstroms Resolution:
Implications For An Enzymatic Mechanism
Length = 353
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 17/96 (17%)
Query: 200 DGDGVSIFGGSHVWVDHCSLSNCN-------------DGLIDAIHGSTAITISNNYMTHH 246
DGD + + +VWVDH L N + +D S +T+S NY+
Sbjct: 129 DGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGV 188
Query: 247 NKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMP 282
KV L G S + D +T N++ + + R+P
Sbjct: 189 KKVGLDGSS---SSDTGRNITYHHNYYND-VNARLP 220
>pdb|3ZXS|A Chain A, Cryptochrome B From Rhodobacter Sphaeroides
pdb|3ZXS|B Chain B, Cryptochrome B From Rhodobacter Sphaeroides
pdb|3ZXS|C Chain C, Cryptochrome B From Rhodobacter Sphaeroides
Length = 522
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 37 SINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVT 96
++ +S NLG L P++ C R + +W E R L + GF +Q +G ++ + T
Sbjct: 276 ALLSSSMNLGLL-----GPMEVCRRAETEWREGRAPL-NAVEGFIRQILGWREYVRGIWT 329
Query: 97 DSGDD 101
SG D
Sbjct: 330 LSGPD 334
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In
Complex With Pentagalacturonic Acid
Length = 353
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 200 DGDGVSIFGGSHVWVDHCSLSNCN-------------DGLIDAIHGSTAITISNNYMTHH 246
DGD + + +VWVDH L N + +D S +T+S NY+
Sbjct: 129 DGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGV 188
Query: 247 NKVMLLGHSDTFTQDKNMQVTIAFNHFGE 275
KV L G S + D +T N++ +
Sbjct: 189 KKVGLDGSS---SSDTGRNITYHHNYYND 214
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 42 RRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDD 101
R++L +L NP D W + R LA C +G A+GG++ TDS
Sbjct: 36 RQSLSYLE--AYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 93
Query: 102 DPVNP 106
D NP
Sbjct: 94 DCYNP 98
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 42 RRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDD 101
R++L +L NP D W + R LA C +G A+GG++ TDS
Sbjct: 35 RQSLSYLE--AYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 92
Query: 102 DPVNP 106
D NP
Sbjct: 93 DCYNP 97
>pdb|1QCX|A Chain A, Pectin Lyase B
Length = 359
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 25/154 (16%)
Query: 137 LIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWR 196
+ +NS K+I G+G I G V N+II I + D Y W
Sbjct: 104 ITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDIN-----------PKYVW- 151
Query: 197 TISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTA---ITISNNYMTHHNKVMLL- 252
GD +++ VW+DH + + G + G++A +TIS + + +
Sbjct: 152 ---GGDAITVDDSDLVWIDHVTTARI--GRQHIVLGTSADNRVTISYSLIDGRSDYSATC 206
Query: 253 -GHS--DTFTQDKNMQVTIAFNHFGEGLVQRMPR 283
GH + N VT+ N+F L RMP+
Sbjct: 207 NGHHYWGVYLDGSNDMVTLKGNYF-YNLSGRMPK 239
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 23 PVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGK 82
P + P+ V ++ + R++L +L NP + W + R LA C +G
Sbjct: 11 PCRAPK-VGRLIYTAGGYFRQSLSYLE--AYNPSNGSWLRLADLQVPRSGLAGCVVGGLL 67
Query: 83 QAIGGKDGKIYVVTDSGDDDPVNP 106
A+GG++ TDS D NP
Sbjct: 68 YAVGGRNNSPDGNTDSSALDCYNP 91
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 23 PVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGK 82
P + P+ V ++ + R++L +L NP + W + R LA C +G
Sbjct: 10 PCRAPK-VGRLIYTAGGYFRQSLSYLE--AYNPSNGSWLRLADLQVPRSGLAGCVVGGLL 66
Query: 83 QAIGGKDGKIYVVTDSGDDDPVNP 106
A+GG++ TDS D NP
Sbjct: 67 YAVGGRNNSPDGNTDSSALDCYNP 90
>pdb|1IDK|A Chain A, Pectin Lyase A
Length = 359
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 32/143 (22%)
Query: 137 LIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWR 196
+ + S K++ G G+S I G V NIII I + D Y W
Sbjct: 104 ITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDIN-----------PKYVWG 152
Query: 197 TISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTA---ITISNNYM---------- 243
GD +++ VW+DH + + G + G++A ++++NNY+
Sbjct: 153 ----GDAITLDDCDLVWIDHVTTARI--GRQHYVLGTSADNRVSLTNNYIDGVSDYSATC 206
Query: 244 --THHNKVMLLGHSDTFTQDKNM 264
H+ + L G +D T N
Sbjct: 207 DGYHYWAIYLDGDADLVTMKGNY 229
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 42 RRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDD 101
R++L +L NP + W + R LA C +G A+GG++ TDS
Sbjct: 35 RQSLSYLE--AYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 92
Query: 102 DPVNP 106
D NP
Sbjct: 93 DCYNP 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,237,288
Number of Sequences: 62578
Number of extensions: 413155
Number of successful extensions: 923
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 891
Number of HSP's gapped (non-prelim): 28
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)