Query 023390
Match_columns 283
No_of_seqs 277 out of 925
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 03:40:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 1.6E-44 3.5E-49 335.2 18.7 174 82-283 46-235 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 1.1E-41 2.4E-46 302.7 9.9 155 119-283 1-164 (200)
3 smart00656 Amb_all Amb_all dom 100.0 5.8E-38 1.3E-42 277.0 15.9 132 135-283 10-150 (190)
4 TIGR03805 beta_helix_1 paralle 98.6 2.1E-06 4.5E-11 81.6 15.4 151 111-274 1-171 (314)
5 PLN02155 polygalacturonase 98.3 2E-05 4.4E-10 77.4 14.5 98 158-274 169-267 (394)
6 PLN02188 polygalacturonase/gly 98.3 3E-05 6.5E-10 76.4 15.5 98 158-274 179-277 (404)
7 PLN03003 Probable polygalactur 98.2 2.5E-05 5.4E-10 78.0 14.2 142 120-274 104-260 (456)
8 PLN02218 polygalacturonase ADP 98.2 3.2E-05 7E-10 76.8 14.5 97 159-274 217-314 (431)
9 PF00295 Glyco_hydro_28: Glyco 98.2 2.7E-05 5.9E-10 74.1 12.6 124 118-274 90-214 (326)
10 PLN02793 Probable polygalactur 98.2 5.3E-05 1.2E-09 75.5 15.1 97 159-274 202-299 (443)
11 PF14592 Chondroitinas_B: Chon 98.0 6.8E-05 1.5E-09 74.2 11.5 163 110-279 6-213 (425)
12 PLN03010 polygalacturonase 97.9 0.00025 5.5E-09 70.0 14.9 113 160-274 160-279 (409)
13 TIGR03805 beta_helix_1 paralle 97.9 0.00023 5E-09 67.7 13.2 128 140-276 62-203 (314)
14 PLN02218 polygalacturonase ADP 97.9 0.0003 6.6E-09 69.9 14.0 120 119-274 146-284 (431)
15 PF12708 Pectate_lyase_3: Pect 97.8 0.00059 1.3E-08 59.3 13.9 154 110-278 20-221 (225)
16 PLN03003 Probable polygalactur 97.7 0.00061 1.3E-08 68.2 13.7 66 200-274 160-230 (456)
17 PLN02155 polygalacturonase 97.7 0.00086 1.9E-08 66.0 14.1 117 121-274 107-237 (394)
18 PLN02793 Probable polygalactur 97.5 0.0021 4.6E-08 64.2 14.5 118 121-274 135-269 (443)
19 PLN03010 polygalacturonase 97.5 0.0032 6.9E-08 62.4 14.5 65 201-272 180-249 (409)
20 PF00295 Glyco_hydro_28: Glyco 97.4 0.00077 1.7E-08 64.3 8.5 109 136-274 61-184 (326)
21 PLN02480 Probable pectinestera 97.3 0.0061 1.3E-07 59.1 14.4 121 110-245 62-217 (343)
22 PF01696 Adeno_E1B_55K: Adenov 97.2 0.013 2.9E-07 57.6 15.2 115 111-250 57-182 (386)
23 PLN02188 polygalacturonase/gly 97.2 0.0059 1.3E-07 60.4 12.9 118 121-274 114-247 (404)
24 PF13229 Beta_helix: Right han 97.1 0.0036 7.8E-08 50.8 8.6 105 159-274 2-110 (158)
25 COG5434 PGU1 Endopygalactoruna 97.0 0.0064 1.4E-07 62.2 11.8 96 158-274 262-367 (542)
26 PLN02197 pectinesterase 96.9 0.073 1.6E-06 55.2 17.8 152 63-244 244-443 (588)
27 TIGR03808 RR_plus_rpt_1 twin-a 96.6 0.016 3.4E-07 58.1 10.2 107 143-255 122-269 (455)
28 PF13229 Beta_helix: Right han 96.4 0.015 3.2E-07 47.2 7.5 90 157-274 45-135 (158)
29 PF05048 NosD: Periplasmic cop 96.4 0.052 1.1E-06 48.6 11.5 20 158-177 58-77 (236)
30 TIGR03808 RR_plus_rpt_1 twin-a 96.4 0.15 3.3E-06 51.2 15.6 117 110-246 56-178 (455)
31 PLN02176 putative pectinestera 96.2 0.15 3.2E-06 49.6 14.3 121 110-244 53-207 (340)
32 PF05048 NosD: Periplasmic cop 95.6 0.31 6.7E-06 43.6 13.0 104 158-274 36-142 (236)
33 PLN02682 pectinesterase family 95.6 0.29 6.3E-06 48.1 13.5 120 110-244 84-247 (369)
34 PLN02432 putative pectinestera 95.6 0.3 6.5E-06 46.6 13.2 115 110-244 25-172 (293)
35 PF07602 DUF1565: Protein of u 95.1 0.84 1.8E-05 42.5 14.3 121 109-248 16-165 (246)
36 PLN02665 pectinesterase family 95.0 0.63 1.4E-05 45.7 13.6 105 110-228 82-205 (366)
37 PLN02634 probable pectinestera 94.9 0.69 1.5E-05 45.3 13.7 121 110-244 70-233 (359)
38 PLN02170 probable pectinestera 94.9 0.43 9.4E-06 49.0 12.7 116 110-244 239-392 (529)
39 PLN02416 probable pectinestera 94.8 0.58 1.3E-05 48.2 13.3 117 110-245 244-397 (541)
40 PLN02708 Probable pectinestera 94.7 0.48 1E-05 48.9 12.6 115 110-244 255-409 (553)
41 PLN02301 pectinesterase/pectin 94.6 0.59 1.3E-05 48.2 13.0 116 110-244 250-402 (548)
42 PLN02304 probable pectinestera 94.6 1 2.3E-05 44.4 14.1 120 110-244 89-246 (379)
43 PLN02745 Putative pectinestera 94.6 1.4 3E-05 46.0 15.6 116 110-245 299-452 (596)
44 PLN02995 Probable pectinestera 94.6 0.59 1.3E-05 48.1 12.9 115 110-244 237-391 (539)
45 PLN02916 pectinesterase family 94.3 0.73 1.6E-05 47.1 12.8 67 110-179 201-290 (502)
46 PLN02506 putative pectinestera 94.3 0.64 1.4E-05 47.8 12.4 116 110-244 246-398 (537)
47 PLN02201 probable pectinestera 94.2 0.87 1.9E-05 46.7 13.0 116 110-245 220-373 (520)
48 PLN03043 Probable pectinestera 94.1 3.2 6.9E-05 42.8 16.9 115 110-244 237-392 (538)
49 PLN02488 probable pectinestera 94.1 0.94 2E-05 46.3 12.9 116 110-245 211-364 (509)
50 PLN02933 Probable pectinestera 94.0 1.3 2.7E-05 45.7 13.6 115 110-244 232-384 (530)
51 PLN02990 Probable pectinestera 94.0 0.96 2.1E-05 46.9 12.9 115 110-244 273-426 (572)
52 PLN02313 Pectinesterase/pectin 93.9 0.73 1.6E-05 47.9 12.0 116 110-244 289-441 (587)
53 PF01095 Pectinesterase: Pecti 93.8 0.71 1.5E-05 43.9 11.0 113 110-244 14-146 (298)
54 PLN02773 pectinesterase 93.7 2.1 4.6E-05 41.3 14.0 117 110-245 19-182 (317)
55 PLN02217 probable pectinestera 93.6 1.3 2.8E-05 46.8 13.2 115 110-244 264-416 (670)
56 PLN02314 pectinesterase 93.4 1.2 2.6E-05 46.3 12.6 115 110-244 292-444 (586)
57 COG5434 PGU1 Endopygalactoruna 93.4 0.37 8.1E-06 49.6 8.7 144 118-273 236-395 (542)
58 PLN02484 probable pectinestera 93.4 1.7 3.6E-05 45.3 13.5 115 110-244 286-439 (587)
59 PLN02497 probable pectinestera 93.2 2.3 5E-05 41.3 13.5 122 110-244 46-201 (331)
60 PLN02468 putative pectinestera 93.2 1.3 2.9E-05 45.8 12.4 115 110-244 272-424 (565)
61 PLN02713 Probable pectinestera 92.9 2.1 4.6E-05 44.3 13.5 115 110-244 264-419 (566)
62 PF04431 Pec_lyase_N: Pectate 92.8 0.072 1.6E-06 38.9 2.0 18 22-39 23-40 (56)
63 PLN02671 pectinesterase 92.8 2.7 5.9E-05 41.2 13.4 104 110-228 73-204 (359)
64 PRK10531 acyl-CoA thioesterase 92.0 4.5 9.7E-05 40.6 13.9 51 164-227 204-255 (422)
65 smart00656 Amb_all Amb_all dom 92.0 6.5 0.00014 34.8 13.7 95 136-245 41-143 (190)
66 COG3420 NosD Nitrous oxidase a 89.4 1.4 3.1E-05 43.1 7.6 95 136-246 99-193 (408)
67 PF00544 Pec_lyase_C: Pectate 85.2 11 0.00024 33.6 10.4 96 156-274 74-178 (200)
68 COG3866 PelB Pectate lyase [Ca 84.6 7.1 0.00015 37.8 9.2 78 200-277 115-199 (345)
69 COG3420 NosD Nitrous oxidase a 80.4 21 0.00045 35.3 10.8 41 135-177 45-88 (408)
70 PF03211 Pectate_lyase: Pectat 76.7 23 0.00049 32.5 9.4 50 198-248 93-143 (215)
71 PF12708 Pectate_lyase_3: Pect 76.1 3.9 8.6E-05 35.2 4.2 41 208-249 183-223 (225)
72 TIGR03804 para_beta_helix para 69.6 7.2 0.00016 25.9 3.4 40 203-244 1-40 (44)
73 PF08480 Disaggr_assoc: Disagg 65.1 58 0.0013 29.5 9.1 72 208-280 32-112 (198)
74 PRK10123 wcaM putative colanic 59.4 17 0.00036 35.4 4.9 56 162-228 264-319 (464)
75 PF07602 DUF1565: Protein of u 57.7 53 0.0012 30.7 7.9 90 140-251 96-193 (246)
76 TIGR03804 para_beta_helix para 50.9 38 0.00082 22.3 4.3 42 159-222 1-42 (44)
77 PF07822 Toxin_13: Neurotoxin 50.5 2 4.2E-05 30.5 -2.1 19 56-74 20-38 (55)
78 PF01696 Adeno_E1B_55K: Adenov 48.3 2.8E+02 0.0061 27.7 11.5 87 160-254 139-228 (386)
79 PF12541 DUF3737: Protein of u 47.0 44 0.00094 31.8 5.5 11 209-219 155-165 (277)
80 PF10880 DUF2673: Protein of u 36.6 23 0.0005 26.1 1.5 24 10-33 10-33 (65)
81 PF14592 Chondroitinas_B: Chon 27.8 3.9E+02 0.0084 27.1 9.0 79 199-281 182-287 (425)
82 PLN02698 Probable pectinestera 24.2 2.5E+02 0.0054 28.9 7.1 20 159-179 264-283 (497)
83 COG1424 BioW Pimeloyl-CoA synt 22.1 1.6E+02 0.0035 27.1 4.6 67 48-126 161-237 (239)
84 cd06401 PB1_TFG The PB1 domain 21.2 86 0.0019 24.6 2.4 27 89-125 52-78 (81)
85 smart00710 PbH1 Parallel beta- 21.2 1.1E+02 0.0023 16.6 2.3 14 211-224 3-16 (26)
86 PF12541 DUF3737: Protein of u 21.1 1E+02 0.0022 29.4 3.3 14 208-221 37-50 (277)
87 PRK13663 hypothetical protein; 20.1 90 0.0019 31.8 2.9 36 76-117 154-189 (493)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-44 Score=335.18 Aligned_cols=174 Identities=33% Similarity=0.488 Sum_probs=155.1
Q ss_pred CCccCCCCCeEEEEcCCCCCCCCCCCchhHHHhhhcCCCeEEEEeeeeEEEeC------ceEEecCCcEEEeeCCceEEe
Q 023390 82 KQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLK------EELIMNSFKTIDGRGASVHIA 155 (283)
Q Consensus 82 ~~ttGG~gG~v~~VT~~~d~d~~~~~pGtLr~av~~~~P~~IvF~~~g~I~L~------~~L~i~snkTI~G~ga~~~I~ 155 (283)
.+||||.||++++|++.+| |..+++..+|..+++-+.|+|.+. .+|.+.|||||.|.|++++|.
T Consensus 46 ~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~ 115 (345)
T COG3866 46 TGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV 115 (345)
T ss_pred CCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE
Confidence 3899999999999999998 999999999995555556688887 567789999999999999999
Q ss_pred CCCeEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEe-eCCceEEEeeeeeec--------CCCCc
Q 023390 156 GGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSI-FGGSHVWVDHCSLSN--------CNDGL 226 (283)
Q Consensus 156 ~G~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I-~gs~nVWIDHcs~s~--------~~Dgl 226 (283)
|++|+|+.+.|||||||+|++...+. ...|+|+| .+++|||||||+|+. ..||+
T Consensus 116 -g~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl 178 (345)
T COG3866 116 -GGGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGL 178 (345)
T ss_pred -eceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCcc
Confidence 66999999999999999999865321 12599999 579999999999999 78999
Q ss_pred eecccCCceEEEEcceecccCeEEEeecCCCcC-CCCceeEEEEceEEcCCCCCCCCC
Q 023390 227 IDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFGEGLVQRMPR 283 (283)
Q Consensus 227 iDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~-~D~~~~VTih~N~F~~~~~~R~PR 283 (283)
+|+++++++||||||+|++|+|.+|+|.+|+.. +|...+||+||||| +|+.||+||
T Consensus 179 ~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~Pr 235 (345)
T COG3866 179 VDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPR 235 (345)
T ss_pred EEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCc
Confidence 999999999999999999999999999999854 46789999999999 699999998
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=1.1e-41 Score=302.75 Aligned_cols=155 Identities=41% Similarity=0.605 Sum_probs=126.7
Q ss_pred CCeEEEEeeeeEEEeCceEEecCCcEEEeeCCceEEeCCCeEEEE-eeccEEEEeeEEEecccCCCceeecCCCccccCc
Q 023390 119 EPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQ-YVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRT 197 (283)
Q Consensus 119 ~P~~IvF~~~g~I~L~~~L~i~snkTI~G~ga~~~I~~G~~i~i~-~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~ 197 (283)
+|++| +++|+|+++.+|.|.|||||+|+|++++|. |+|+.+. +++|||||||+|+++. ++..+...+...
T Consensus 1 ~~~ii--~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~ 71 (200)
T PF00544_consen 1 EPLII--KVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGD 71 (200)
T ss_dssp S-EEE--EEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEE
T ss_pred CcEEE--EEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCcc
Confidence 35555 557799999999999999999999999999 6789886 8999999999999841 111222222333
Q ss_pred CCCCCeEEeeCCceEEEeeeeeecC--------CCCceecccCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEE
Q 023390 198 ISDGDGVSIFGGSHVWVDHCSLSNC--------NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIA 269 (283)
Q Consensus 198 ~~~~DaI~I~gs~nVWIDHcs~s~~--------~DgliDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~~D~~~~VTih 269 (283)
..++|+|+|++++|||||||+|+|+ .||++|++.++++||||||+|.+|+|+||+|++|+...|..++||||
T Consensus 72 ~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~h 151 (200)
T PF00544_consen 72 SSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFH 151 (200)
T ss_dssp ECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEE
T ss_pred ccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEE
Confidence 4689999999999999999999999 99999999999999999999999999999999988877777999999
Q ss_pred ceEEcCCCCCCCCC
Q 023390 270 FNHFGEGLVQRMPR 283 (283)
Q Consensus 270 ~N~F~~~~~~R~PR 283 (283)
||||. ++.|||||
T Consensus 152 hN~f~-~~~~R~P~ 164 (200)
T PF00544_consen 152 HNYFA-NTNSRNPR 164 (200)
T ss_dssp S-EEE-EEEE-TTE
T ss_pred eEEEC-chhhCCCc
Confidence 99995 99999997
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=5.8e-38 Score=277.04 Aligned_cols=132 Identities=59% Similarity=0.875 Sum_probs=120.9
Q ss_pred ceEEecCCcEEEeeCCceEEeCCCeEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEE
Q 023390 135 EELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWV 214 (283)
Q Consensus 135 ~~L~i~snkTI~G~ga~~~I~~G~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWI 214 (283)
.+|.|+|||||+|+|+++.|. |.+|+++.++|||||||+|++..+. . ..++|+|++++++||||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~-----------~----~~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV-----------Y----GSDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC-----------C----CCCCCEEEEeCCCeEEE
Confidence 578999999999999999998 6799998899999999999975431 1 14789999999999999
Q ss_pred eeeeeecC---------CCCceecccCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEEceEEcCCCCCCCCC
Q 023390 215 DHCSLSNC---------NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPR 283 (283)
Q Consensus 215 DHcs~s~~---------~DgliDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~~D~~~~VTih~N~F~~~~~~R~PR 283 (283)
|||+|+|. .|+++|+++++++||||||+|.+|+|++|+|++|+...+..++||+|||||+ ++.+|+||
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~ 150 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPR 150 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCc
Confidence 99999998 8999999999999999999999999999999999877666899999999996 89999998
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.57 E-value=2.1e-06 Score=81.65 Aligned_cols=151 Identities=19% Similarity=0.260 Sum_probs=98.2
Q ss_pred HHHhhhcCCCe-EEEEeeeeEEEeCceEEec-CCcEEEeeCCc-eEEe------CCCeEEEEeeccEEEEeeEEEecccC
Q 023390 111 LRYAVIQDEPL-WIIFARDMVITLKEELIMN-SFKTIDGRGAS-VHIA------GGPCITVQYVTNIIIHGINIHDCKRG 181 (283)
Q Consensus 111 Lr~av~~~~P~-~IvF~~~g~I~L~~~L~i~-snkTI~G~ga~-~~I~------~G~~i~i~~a~NVIIrnL~i~~~~~~ 181 (283)
|++|+.+-.|- +|++. .|+.++++.|.|. +++||.|.|.. +.|. ++.+|.+ .++||.|+++++++...
T Consensus 1 iQ~Ai~~A~~GDtI~l~-~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~- 77 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLP-EGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKG- 77 (314)
T ss_pred CHhHHhhCCCCCEEEEC-CCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCC-
Confidence 45666655554 45444 4788888888885 89999998764 3332 1345655 68899999998886422
Q ss_pred CCce-eecCC------CccccCc----CCCCCeEEeeCCceEEEeeeeeecCCCCceecccCCceEEEEcceecccCeEE
Q 023390 182 GNAN-VRDSP------SHYGWRT----ISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVM 250 (283)
Q Consensus 182 g~~~-ir~~~------~~~g~r~----~~~~DaI~I~gs~nVWIDHcs~s~~~DgliDv~~gs~~ITISnn~f~~H~k~~ 250 (283)
.+. ++.+. -++.|.. ....+||.+..|+++-|.+|.++...|--|-+ ..|++++|++|.+.+-..++
T Consensus 78 -~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv-~~s~~~~v~nN~~~~n~~GI 155 (314)
T TIGR03805 78 -DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV-GQSQNIVVRNNVAEENVAGI 155 (314)
T ss_pred -CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEE-CCCCCeEEECCEEccCcceE
Confidence 121 11110 0111110 13468888888999999999998887744443 46889999999998766666
Q ss_pred EeecCCCcCCCCceeEEEEceEEc
Q 023390 251 LLGHSDTFTQDKNMQVTIAFNHFG 274 (283)
Q Consensus 251 LiG~sd~~~~D~~~~VTih~N~F~ 274 (283)
.+-.+. ++.+.+|.+.
T Consensus 156 ~i~~S~--------~~~v~~N~~~ 171 (314)
T TIGR03805 156 EIENSQ--------NADVYNNIAT 171 (314)
T ss_pred EEEecC--------CcEEECCEEe
Confidence 665543 5788888885
No 5
>PLN02155 polygalacturonase
Probab=98.27 E-value=2e-05 Score=77.38 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=78.1
Q ss_pred CeEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCCCceecccCCceEE
Q 023390 158 PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAIT 237 (283)
Q Consensus 158 ~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~DgliDv~~gs~~IT 237 (283)
..+.+.+++||.|+||+|.. |+ ...+.|||.+..++||+|.+|.++.+.|.. .++.++++|+
T Consensus 169 w~i~~~~~~nv~i~~v~I~~--p~---------------~~~NtDGidi~~s~nV~I~~~~I~~gDDcI-aik~gs~nI~ 230 (394)
T PLN02155 169 SHMTLNGCTNVVVRNVKLVA--PG---------------NSPNTDGFHVQFSTGVTFTGSTVQTGDDCV-AIGPGTRNFL 230 (394)
T ss_pred eEEEEECeeeEEEEEEEEEC--CC---------------CCCCCCccccccceeEEEEeeEEecCCceE-EcCCCCceEE
Confidence 45677789999999999985 21 014679999999999999999999998854 7788999999
Q ss_pred EEcceecccCeEEEeecCCCc-CCCCceeEEEEceEEc
Q 023390 238 ISNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFG 274 (283)
Q Consensus 238 ISnn~f~~H~k~~LiG~sd~~-~~D~~~~VTih~N~F~ 274 (283)
|++|.+.. ..++-+|+.-.+ ......+|++.++.|.
T Consensus 231 I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~ 267 (394)
T PLN02155 231 ITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFT 267 (394)
T ss_pred EEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEe
Confidence 99999974 346779986433 2344679999999994
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.26 E-value=3e-05 Score=76.40 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=75.9
Q ss_pred CeEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCCCceecccCCceEE
Q 023390 158 PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAIT 237 (283)
Q Consensus 158 ~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~DgliDv~~gs~~IT 237 (283)
..|.+..++||.|+||+|.. |. .....|||.+..++||+|.+|.++.+.| .|.++.++++|+
T Consensus 179 w~i~~~~~~~v~i~~v~I~~--~~---------------~spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI~ 240 (404)
T PLN02188 179 FHIALVECRNFKGSGLKISA--PS---------------DSPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQVT 240 (404)
T ss_pred eEEEEEccccEEEEEEEEeC--CC---------------CCCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccEE
Confidence 45667789999999999974 21 0136799999999999999999999988 457788999999
Q ss_pred EEcceecccCeEEEeecCCCcC-CCCceeEEEEceEEc
Q 023390 238 ISNNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFG 274 (283)
Q Consensus 238 ISnn~f~~H~k~~LiG~sd~~~-~D~~~~VTih~N~F~ 274 (283)
|+|+.+.. ..++-+|+--.+. .....+|++.++.|.
T Consensus 241 I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~ 277 (404)
T PLN02188 241 ITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFT 277 (404)
T ss_pred EEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEE
Confidence 99999853 3467788743221 233678999999885
No 7
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.22 E-value=2.5e-05 Score=78.04 Aligned_cols=142 Identities=18% Similarity=0.282 Sum_probs=91.1
Q ss_pred CeEEEEeeeeEEEeCceEEecCCcEEEeeCCceEE---eCCCeEEEEeeccEEEEeeEEEecccCCCce-----------
Q 023390 120 PLWIIFARDMVITLKEELIMNSFKTIDGRGASVHI---AGGPCITVQYVTNIIIHGINIHDCKRGGNAN----------- 185 (283)
Q Consensus 120 P~~IvF~~~g~I~L~~~L~i~snkTI~G~ga~~~I---~~G~~i~i~~a~NVIIrnL~i~~~~~~g~~~----------- 185 (283)
..||.|..- +.|.|...=||+|+|..-.- ..-.-|++.+++|+.|++|++++...|--..
T Consensus 104 ~~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l 177 (456)
T PLN03003 104 DQWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSL 177 (456)
T ss_pred cceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEE
Confidence 358888641 24566444588888753110 0011345556666666666665432210000
Q ss_pred eecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCCCceecccCCceEEEEcceecccCeEEEeecCCCcC-CCCce
Q 023390 186 VRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT-QDKNM 264 (283)
Q Consensus 186 ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~DgliDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~-~D~~~ 264 (283)
...+|. ...+.|||.+.+|+||+|.+|.++.+.|.. .++.++++|+|+||.+.. ..++-+|+.-++. .+...
T Consensus 178 ~I~ap~-----~spNTDGIDi~~S~nV~I~n~~I~tGDDCI-aiksgs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~ 250 (456)
T PLN03003 178 RINAPE-----SSPNTDGIDVGASSNVVIQDCIIATGDDCI-AINSGTSNIHISGIDCGP-GHGISIGSLGKDGETATVE 250 (456)
T ss_pred EEeCCC-----CCCCCCcEeecCcceEEEEecEEecCCCeE-EeCCCCccEEEEeeEEEC-CCCeEEeeccCCCCcceEE
Confidence 000111 124679999999999999999999887765 778999999999999864 3467788765432 34578
Q ss_pred eEEEEceEEc
Q 023390 265 QVTIAFNHFG 274 (283)
Q Consensus 265 ~VTih~N~F~ 274 (283)
+|++.++.|.
T Consensus 251 NV~v~n~~~~ 260 (456)
T PLN03003 251 NVCVQNCNFR 260 (456)
T ss_pred EEEEEeeEEE
Confidence 9999999995
No 8
>PLN02218 polygalacturonase ADPG
Probab=98.20 E-value=3.2e-05 Score=76.77 Aligned_cols=97 Identities=14% Similarity=0.206 Sum_probs=73.4
Q ss_pred eEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCCCceecccCCceEEE
Q 023390 159 CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITI 238 (283)
Q Consensus 159 ~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~DgliDv~~gs~~ITI 238 (283)
.+.+.+++||.|+||+|.. |+ ...+.|||.+.+++||.|.+|.++.+.| .|.++.++++|+|
T Consensus 217 ~i~~~~~~nV~i~~v~I~a--~~---------------~spNTDGIdi~ss~nV~I~n~~I~tGDD-cIaIksgs~nI~I 278 (431)
T PLN02218 217 QISIEKCSNVQVSNVVVTA--PA---------------DSPNTDGIHITNTQNIRVSNSIIGTGDD-CISIESGSQNVQI 278 (431)
T ss_pred EEEEEceeeEEEEEEEEeC--CC---------------CCCCCCcEeecccceEEEEccEEecCCc-eEEecCCCceEEE
Confidence 3445567888888888763 21 1136799999999999999999998866 5588999999999
Q ss_pred EcceecccCeEEEeecCCCcC-CCCceeEEEEceEEc
Q 023390 239 SNNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFG 274 (283)
Q Consensus 239 Snn~f~~H~k~~LiG~sd~~~-~D~~~~VTih~N~F~ 274 (283)
+||.+. +..++-+|+.-.+. .+...+|++.++.|.
T Consensus 279 ~n~~c~-~GHGisIGS~g~~~~~~~V~nV~v~n~~~~ 314 (431)
T PLN02218 279 NDITCG-PGHGISIGSLGDDNSKAFVSGVTVDGAKLS 314 (431)
T ss_pred EeEEEE-CCCCEEECcCCCCCCCceEEEEEEEccEEe
Confidence 999995 34457788765432 234678999999984
No 9
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=98.16 E-value=2.7e-05 Score=74.13 Aligned_cols=124 Identities=20% Similarity=0.223 Sum_probs=86.4
Q ss_pred CCCeEEEEeeeeEEEeCceEEecCCcEEEeeCCceEEeCCCeEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCc
Q 023390 118 DEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRT 197 (283)
Q Consensus 118 ~~P~~IvF~~~g~I~L~~~L~i~snkTI~G~ga~~~I~~G~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~ 197 (283)
..|+.+.|...-.+ .|. ++||. .+| ...+.+..++||.|+||+|+....
T Consensus 90 ~rp~~i~~~~~~~~------~i~-~i~~~--nsp-----~w~~~~~~~~nv~i~~i~I~~~~~----------------- 138 (326)
T PF00295_consen 90 RRPRLIRFNNCKNV------TIE-GITIR--NSP-----FWHIHINDCDNVTISNITINNPAN----------------- 138 (326)
T ss_dssp SSSESEEEEEEEEE------EEE-SEEEE--S-S-----SESEEEESEEEEEEESEEEEEGGG-----------------
T ss_pred cccceeeeeeecce------EEE-eeEec--CCC-----eeEEEEEccCCeEEcceEEEecCC-----------------
Confidence 56888888753222 222 33333 222 356778889999999999996321
Q ss_pred CCCCCeEEeeCCceEEEeeeeeecCCCCceecccCCceEEEEcceecccCeEEEeecCCCcC-CCCceeEEEEceEEc
Q 023390 198 ISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFG 274 (283)
Q Consensus 198 ~~~~DaI~I~gs~nVWIDHcs~s~~~DgliDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~-~D~~~~VTih~N~F~ 274 (283)
....|||.+.+++||.|++|.+....|.. .++.++.+|+|+||.|.. ..++-+|+.-... +....+|+|.++.|.
T Consensus 139 ~~NtDGid~~~s~nv~I~n~~i~~gDD~I-aiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~ 214 (326)
T PF00295_consen 139 SPNTDGIDIDSSKNVTIENCFIDNGDDCI-AIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTII 214 (326)
T ss_dssp CTS--SEEEESEEEEEEESEEEESSSESE-EESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEE
T ss_pred CCCcceEEEEeeeEEEEEEeecccccCcc-cccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEee
Confidence 13679999999999999999999886655 668788899999999974 4457788654321 122568999999884
No 10
>PLN02793 Probable polygalacturonase
Probab=98.16 E-value=5.3e-05 Score=75.46 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=72.7
Q ss_pred eEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCCCceecccCCceEEE
Q 023390 159 CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITI 238 (283)
Q Consensus 159 ~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~DgliDv~~gs~~ITI 238 (283)
.|.+.+++||.|+||+|.. |. ...+.|||.+..++||+|.+|.+..+.|.. .++.++++|+|
T Consensus 202 ~i~~~~~~nv~i~~l~I~~--p~---------------~spNTDGIdi~~s~nV~I~n~~I~~gDDcI-aik~~s~nI~I 263 (443)
T PLN02793 202 HIAFTNCRRVTISGLKVIA--PA---------------TSPNTDGIHISASRGVVIKDSIVRTGDDCI-SIVGNSSRIKI 263 (443)
T ss_pred EEEEEccCcEEEEEEEEEC--CC---------------CCCCCCcEeeeccceEEEEeCEEeCCCCeE-EecCCcCCEEE
Confidence 4556677888888888874 11 114679999999999999999999776655 66889999999
Q ss_pred EcceecccCeEEEeecCCCc-CCCCceeEEEEceEEc
Q 023390 239 SNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFG 274 (283)
Q Consensus 239 Snn~f~~H~k~~LiG~sd~~-~~D~~~~VTih~N~F~ 274 (283)
+||.+.. ..++-+|+.-.+ ......+|++.++.|.
T Consensus 264 ~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~ 299 (443)
T PLN02793 264 RNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLS 299 (443)
T ss_pred EEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEe
Confidence 9999863 335778875332 2233678999999884
No 11
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=97.97 E-value=6.8e-05 Score=74.19 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=74.5
Q ss_pred hHHHhhhc--CCCeEEEEeeeeEEEeCceEEe------cCCcEEEeeC-CceEEeCCCeEEEEeeccEEEEeeEEEeccc
Q 023390 110 TLRYAVIQ--DEPLWIIFARDMVITLKEELIM------NSFKTIDGRG-ASVHIAGGPCITVQYVTNIIIHGINIHDCKR 180 (283)
Q Consensus 110 tLr~av~~--~~P~~IvF~~~g~I~L~~~L~i------~snkTI~G~g-a~~~I~~G~~i~i~~a~NVIIrnL~i~~~~~ 180 (283)
+|+.|+.+ ++-.+++- +|+-+ ..+|.+ ...+||-.+. ..|.|.|..+|+|. .+.++|.+|.|++..+
T Consensus 6 ~lq~Ai~~a~pGD~I~L~--~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~ 81 (425)
T PF14592_consen 6 ELQSAIDNAKPGDTIVLA--DGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYT 81 (425)
T ss_dssp HHHHHHHH--TT-EEEE---SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE--
T ss_pred HHHHHHHhCCCCCEEEEC--Cceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCC
Confidence 48999975 44344433 45555 335555 2457888873 45778877788884 7999999999998643
Q ss_pred CCCceeecCCC--c-cccC-----------c--CCCCCeEEe----eCCceEEEeeeeeecC-CCC-ceecc-------c
Q 023390 181 GGNANVRDSPS--H-YGWR-----------T--ISDGDGVSI----FGGSHVWVDHCSLSNC-NDG-LIDAI-------H 231 (283)
Q Consensus 181 ~g~~~ir~~~~--~-~g~r-----------~--~~~~DaI~I----~gs~nVWIDHcs~s~~-~Dg-liDv~-------~ 231 (283)
.....+..... + +... . ..+.+...+ .-++|--||||+|..- ..| .+-+. .
T Consensus 82 ~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~ 161 (425)
T PF14592_consen 82 PTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQS 161 (425)
T ss_dssp -TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS--
T ss_pred CCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCccc
Confidence 22121111100 0 0000 0 011222333 1356677899999973 222 22222 2
Q ss_pred CCceEEEEcceec-------ccCeEEEeecCCCcCCCCceeEEEEceEEcCCCCC
Q 023390 232 GSTAITISNNYMT-------HHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQ 279 (283)
Q Consensus 232 gs~~ITISnn~f~-------~H~k~~LiG~sd~~~~D~~~~VTih~N~F~~~~~~ 279 (283)
-..+-+|.+|+|. +..+++-+|.|...-.+ -+.++.+|+| ++|..
T Consensus 162 ~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlF-e~cdG 213 (425)
T PF14592_consen 162 IANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLF-ERCDG 213 (425)
T ss_dssp -----EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE-EEE-S
T ss_pred cccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchh-hhcCC
Confidence 3457799999999 45678899988654333 3899999999 57754
No 12
>PLN03010 polygalacturonase
Probab=97.94 E-value=0.00025 Score=70.03 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=71.5
Q ss_pred EEEEeeccEEEEeeEEEecccCC-----CceeecCCCccc-cCcCCCCCeEEeeCCceEEEeeeeeecCCCCceecccCC
Q 023390 160 ITVQYVTNIIIHGINIHDCKRGG-----NANVRDSPSHYG-WRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGS 233 (283)
Q Consensus 160 i~i~~a~NVIIrnL~i~~~~~~g-----~~~ir~~~~~~g-~r~~~~~DaI~I~gs~nVWIDHcs~s~~~DgliDv~~gs 233 (283)
|++.+++||.|++|++++...|- ...+..+.-.+- .......|||.+..++||+|.+|.+..+.|.. .++.++
T Consensus 160 l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcI-aiksgs 238 (409)
T PLN03010 160 LHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCI-AINSGS 238 (409)
T ss_pred EEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeE-EecCCC
Confidence 55666777777777766532210 000000000000 01124689999999999999999999886655 778888
Q ss_pred ceEEEEcceecccCeEEEeecCCCc-CCCCceeEEEEceEEc
Q 023390 234 TAITISNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFG 274 (283)
Q Consensus 234 ~~ITISnn~f~~H~k~~LiG~sd~~-~~D~~~~VTih~N~F~ 274 (283)
++++|.++.... ..++-+|+.-+. ..+...+|++.++.|.
T Consensus 239 ~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~ 279 (409)
T PLN03010 239 SNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFN 279 (409)
T ss_pred CcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEe
Confidence 888888777652 335667875443 2344678999999985
No 13
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.88 E-value=0.00023 Score=67.75 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=83.9
Q ss_pred cCCcEEEeeCCceEEeCCCeEEEEeeccEEEEeeEEEec------------ccCCC--ceeecCCCccccCcCCCCCeEE
Q 023390 140 NSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDC------------KRGGN--ANVRDSPSHYGWRTISDGDGVS 205 (283)
Q Consensus 140 ~snkTI~G~ga~~~I~~G~~i~i~~a~NVIIrnL~i~~~------------~~~g~--~~ir~~~~~~g~r~~~~~DaI~ 205 (283)
.+++||.|..-.- .++.+|.+++++|++|+++++... ++... ..|++.. . ++ ..++||.
T Consensus 62 a~~VtI~~ltI~~--~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~--i--~g-~~d~GIy 134 (314)
T TIGR03805 62 SDDVTLSDLAVEN--TKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSY--V--RG-ASDAGIY 134 (314)
T ss_pred eCCeEEEeeEEEc--CCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCE--E--EC-CCcccEE
Confidence 5666666653210 124578888999999999998621 11111 1122111 1 11 2346999
Q ss_pred eeCCceEEEeeeeeecCCCCceecccCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEEceEEcCC
Q 023390 206 IFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEG 276 (283)
Q Consensus 206 I~gs~nVWIDHcs~s~~~DgliDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~~D~~~~VTih~N~F~~~ 276 (283)
+..|+++.|-+|.+.....|+.- +.|.+++|.+|.+.+-.-++++-..+....-...++++++|.|..+
T Consensus 135 v~~s~~~~v~nN~~~~n~~GI~i--~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 135 VGQSQNIVVRNNVAEENVAGIEI--ENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred ECCCCCeEEECCEEccCcceEEE--EecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 99999999999999988887643 4689999999999987777777443322111234899999999643
No 14
>PLN02218 polygalacturonase ADPG
Probab=97.86 E-value=0.0003 Score=69.91 Aligned_cols=120 Identities=18% Similarity=0.310 Sum_probs=85.7
Q ss_pred CCeEEEEeeeeEEEeCceEEecC--CcEEEeeCCceE-----Ee------CC-CeEEEEeeccEEEEeeEEEecccCCCc
Q 023390 119 EPLWIIFARDMVITLKEELIMNS--FKTIDGRGASVH-----IA------GG-PCITVQYVTNIIIHGINIHDCKRGGNA 184 (283)
Q Consensus 119 ~P~~IvF~~~g~I~L~~~L~i~s--nkTI~G~ga~~~-----I~------~G-~~i~i~~a~NVIIrnL~i~~~~~~g~~ 184 (283)
...||.|.. -+.|.|.. .=||+|+|..-- .. .. .-|++.+++|+.|++|++++..
T Consensus 146 ~~~wi~~~~------~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp----- 214 (431)
T PLN02218 146 ISKWIMFDG------VNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQ----- 214 (431)
T ss_pred cccCEEEec------CcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCC-----
Confidence 345776643 13566633 268888885210 00 01 1367889999999999999732
Q ss_pred eeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeec-----CCCCceecccCCceEEEEcceecccCeEEEeecCCCcC
Q 023390 185 NVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSN-----CNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT 259 (283)
Q Consensus 185 ~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~ 259 (283)
.=.|.+..++||.|++.++.. -.||. |+ ..|++|+|++|.|..-+.+.-+.+..
T Consensus 215 ----------------~w~i~~~~~~nV~i~~v~I~a~~~spNTDGI-di-~ss~nV~I~n~~I~tGDDcIaIksgs--- 273 (431)
T PLN02218 215 ----------------QIQISIEKCSNVQVSNVVVTAPADSPNTDGI-HI-TNTQNIRVSNSIIGTGDDCISIESGS--- 273 (431)
T ss_pred ----------------CEEEEEEceeeEEEEEEEEeCCCCCCCCCcE-ee-cccceEEEEccEEecCCceEEecCCC---
Confidence 236888899999999999876 46776 74 57899999999999988887776542
Q ss_pred CCCceeEEEEceEEc
Q 023390 260 QDKNMQVTIAFNHFG 274 (283)
Q Consensus 260 ~D~~~~VTih~N~F~ 274 (283)
.+|++.+++++
T Consensus 274 ----~nI~I~n~~c~ 284 (431)
T PLN02218 274 ----QNVQINDITCG 284 (431)
T ss_pred ----ceEEEEeEEEE
Confidence 26888888875
No 15
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.84 E-value=0.00059 Score=59.28 Aligned_cols=154 Identities=19% Similarity=0.258 Sum_probs=85.0
Q ss_pred hHHHhh--h-cCCCeEEEEeeeeEEEeCceEEecCCcEEEeeCCce-EEe---CC-------------------------
Q 023390 110 TLRYAV--I-QDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASV-HIA---GG------------------------- 157 (283)
Q Consensus 110 tLr~av--~-~~~P~~IvF~~~g~I~L~~~L~i~snkTI~G~ga~~-~I~---~G------------------------- 157 (283)
.|+.|+ . ..+..+|.|- .|+..++++|.+.|+++|.|.|... .+. ..
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~P-~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n 98 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYFP-PGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRN 98 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEE
T ss_pred HHHHhhhhcccCCCeEEEEc-CcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEe
Confidence 388888 2 3456677665 5799999999999999999987632 221 00
Q ss_pred --------------CeEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeC-CceEEEeeeeeecC
Q 023390 158 --------------PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFG-GSHVWVDHCSLSNC 222 (283)
Q Consensus 158 --------------~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~g-s~nVWIDHcs~s~~ 222 (283)
.++.+..++|+.|+|++++++.. .+..-.....+.........++.+.+ +.++++..|.+..+
T Consensus 99 l~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
T PF12708_consen 99 LTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGG--DGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCIFNGG 176 (225)
T ss_dssp EEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS---SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEEEESS
T ss_pred eEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCc--cEEEEEccccCcEeecccceeeeeccceeEEEECCccccCC
Confidence 01111235666666666665321 11100000000000000011444443 23455577777778
Q ss_pred CCCceecccCCceEEEEcceecc-cCeEEEeecCCCcCCCCceeEEEEceEEcCCCC
Q 023390 223 NDGLIDAIHGSTAITISNNYMTH-HNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLV 278 (283)
Q Consensus 223 ~DgliDv~~gs~~ITISnn~f~~-H~k~~LiG~sd~~~~D~~~~VTih~N~F~~~~~ 278 (283)
.+| +..+.++++++||.|.. ...++.+-... .+++.+|.|. ++.
T Consensus 177 ~~g---~~~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~-~~~ 221 (225)
T PF12708_consen 177 DNG---IILGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIE-NCD 221 (225)
T ss_dssp SCS---EECEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEE-SSS
T ss_pred Cce---eEeecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEE-CCc
Confidence 888 24455899999999997 55665454332 4999999994 665
No 16
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.73 E-value=0.00061 Score=68.21 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=51.9
Q ss_pred CCCeEEeeCCceEEEeeeeeec-----CCCCceecccCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEEceEEc
Q 023390 200 DGDGVSIFGGSHVWVDHCSLSN-----CNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFG 274 (283)
Q Consensus 200 ~~DaI~I~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~~D~~~~VTih~N~F~ 274 (283)
..=.|.+.+++||.|++..+.. -.||. | ...|++|+|.+|.+..-+.+.-+.+.. .+|++.++.++
T Consensus 160 p~w~i~i~~c~nV~i~~l~I~ap~~spNTDGI-D-i~~S~nV~I~n~~I~tGDDCIaiksgs-------~NI~I~n~~c~ 230 (456)
T PLN03003 160 PMAHIHISECNYVTISSLRINAPESSPNTDGI-D-VGASSNVVIQDCIIATGDDCIAINSGT-------SNIHISGIDCG 230 (456)
T ss_pred CcEEEEEeccccEEEEEEEEeCCCCCCCCCcE-e-ecCcceEEEEecEEecCCCeEEeCCCC-------ccEEEEeeEEE
Confidence 3456778899999999999986 36776 7 457999999999999998888887542 26777777764
No 17
>PLN02155 polygalacturonase
Probab=97.70 E-value=0.00086 Score=66.01 Aligned_cols=117 Identities=20% Similarity=0.362 Sum_probs=85.4
Q ss_pred eEEEEeeeeEEEeCceEEecCCcEEEeeCCceEEe--CC-------CeEEEEeeccEEEEeeEEEecccCCCceeecCCC
Q 023390 121 LWIIFARDMVITLKEELIMNSFKTIDGRGASVHIA--GG-------PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPS 191 (283)
Q Consensus 121 ~~IvF~~~g~I~L~~~L~i~snkTI~G~ga~~~I~--~G-------~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~ 191 (283)
.||.|.. .+.+.|.. =||+|||..---. .+ ..|++.+++||.|++|++++..
T Consensus 107 ~wi~~~~------~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp------------ 167 (394)
T PLN02155 107 YWILFNK------VNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQ------------ 167 (394)
T ss_pred eeEEEEC------cCCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCC------------
Confidence 4776654 23455644 7899998642110 00 2377889999999999999732
Q ss_pred ccccCcCCCCCeEEeeCCceEEEeeeeeecC-----CCCceecccCCceEEEEcceecccCeEEEeecCCCcCCCCceeE
Q 023390 192 HYGWRTISDGDGVSIFGGSHVWVDHCSLSNC-----NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQV 266 (283)
Q Consensus 192 ~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~-----~DgliDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~~D~~~~V 266 (283)
.=.+.+.+++||.|++..+... .||. | ...|++|+|++|.|..-+.+.-+++.. -+|
T Consensus 168 ---------~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGi-d-i~~s~nV~I~~~~I~~gDDcIaik~gs-------~nI 229 (394)
T PLN02155 168 ---------VSHMTLNGCTNVVVRNVKLVAPGNSPNTDGF-H-VQFSTGVTFTGSTVQTGDDCVAIGPGT-------RNF 229 (394)
T ss_pred ---------CeEEEEECeeeEEEEEEEEECCCCCCCCCcc-c-cccceeEEEEeeEEecCCceEEcCCCC-------ceE
Confidence 2367778999999999999653 5776 7 357999999999999998888887652 268
Q ss_pred EEEceEEc
Q 023390 267 TIAFNHFG 274 (283)
Q Consensus 267 Tih~N~F~ 274 (283)
++.++.++
T Consensus 230 ~I~n~~c~ 237 (394)
T PLN02155 230 LITKLACG 237 (394)
T ss_pred EEEEEEEE
Confidence 88877774
No 18
>PLN02793 Probable polygalacturonase
Probab=97.54 E-value=0.0021 Score=64.17 Aligned_cols=118 Identities=16% Similarity=0.273 Sum_probs=84.2
Q ss_pred eEEEEeeeeEEEeCceEEecCCcEEEeeCCceE-----EeC-------CCeEEEEeeccEEEEeeEEEecccCCCceeec
Q 023390 121 LWIIFARDMVITLKEELIMNSFKTIDGRGASVH-----IAG-------GPCITVQYVTNIIIHGINIHDCKRGGNANVRD 188 (283)
Q Consensus 121 ~~IvF~~~g~I~L~~~L~i~snkTI~G~ga~~~-----I~~-------G~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~ 188 (283)
.||.|.. .+.|.|.-.=||+|+|..-- ... -.-|.+.+++||.|++|++++..
T Consensus 135 ~~i~~~~------~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp--------- 199 (443)
T PLN02793 135 KWLYFHG------VNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ--------- 199 (443)
T ss_pred eEEEEec------CceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC---------
Confidence 4666643 13455644468888885321 000 12367889999999999999732
Q ss_pred CCCccccCcCCCCCeEEeeCCceEEEeeeeeec-----CCCCceecccCCceEEEEcceecccCeEEEeecCCCcCCCCc
Q 023390 189 SPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSN-----CNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKN 263 (283)
Q Consensus 189 ~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~~D~~ 263 (283)
.=.+.+.+++||.|++.++.. -.||. | ...|++|+|++|.|..-+.+.-+.+..
T Consensus 200 ------------~~~i~~~~~~nv~i~~l~I~~p~~spNTDGI-d-i~~s~nV~I~n~~I~~gDDcIaik~~s------- 258 (443)
T PLN02793 200 ------------QMHIAFTNCRRVTISGLKVIAPATSPNTDGI-H-ISASRGVVIKDSIVRTGDDCISIVGNS------- 258 (443)
T ss_pred ------------CeEEEEEccCcEEEEEEEEECCCCCCCCCcE-e-eeccceEEEEeCEEeCCCCeEEecCCc-------
Confidence 235677889999999999975 46776 7 457999999999999999888886432
Q ss_pred eeEEEEceEEc
Q 023390 264 MQVTIAFNHFG 274 (283)
Q Consensus 264 ~~VTih~N~F~ 274 (283)
.+|++.++.++
T Consensus 259 ~nI~I~n~~c~ 269 (443)
T PLN02793 259 SRIKIRNIACG 269 (443)
T ss_pred CCEEEEEeEEe
Confidence 26888887774
No 19
>PLN03010 polygalacturonase
Probab=97.46 E-value=0.0032 Score=62.37 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=48.7
Q ss_pred CCeEEeeCCceEEEeeeeeec-----CCCCceecccCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEEceE
Q 023390 201 GDGVSIFGGSHVWVDHCSLSN-----CNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNH 272 (283)
Q Consensus 201 ~DaI~I~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~~D~~~~VTih~N~ 272 (283)
.=.|.+.+++||.|++..+.. -.||. |+ ..|++|+|++|.+..-+.+.-+.+..+ ...|+.-++.
T Consensus 180 ~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGi-Di-~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~ 249 (409)
T PLN03010 180 KNHISIKTCNYVAISKINILAPETSPNTDGI-DI-SYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCG 249 (409)
T ss_pred ceEEEEeccccEEEEEEEEeCCCCCCCCCce-ee-eccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeE
Confidence 345778899999999999875 46776 74 579999999999999998888876422 2355554444
No 20
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.36 E-value=0.00077 Score=64.25 Aligned_cols=109 Identities=19% Similarity=0.292 Sum_probs=77.0
Q ss_pred eEEecCCcEEEeeCCceEE-e---------CCCeEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEE
Q 023390 136 ELIMNSFKTIDGRGASVHI-A---------GGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVS 205 (283)
Q Consensus 136 ~L~i~snkTI~G~ga~~~I-~---------~G~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~ 205 (283)
.+.+.-.=||+|+|..-.- . .-.-|++.+++|+.|++|++++.. .=.+.
T Consensus 61 ni~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp---------------------~w~~~ 119 (326)
T PF00295_consen 61 NITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP---------------------FWHIH 119 (326)
T ss_dssp EEECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S---------------------SESEE
T ss_pred EEEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC---------------------eeEEE
Confidence 3455444699999872100 0 012377889999999999999732 12578
Q ss_pred eeCCceEEEeeeeeecC-----CCCceecccCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEEceEEc
Q 023390 206 IFGGSHVWVDHCSLSNC-----NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFG 274 (283)
Q Consensus 206 I~gs~nVWIDHcs~s~~-----~DgliDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~~D~~~~VTih~N~F~ 274 (283)
+..++||+|+|.++... .||. |+ .++++|+|.+|.|...+.+.-+.+... .|++.+++|.
T Consensus 120 ~~~~~nv~i~~i~I~~~~~~~NtDGi-d~-~~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 120 INDCDNVTISNITINNPANSPNTDGI-DI-DSSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp EESEEEEEEESEEEEEGGGCTS--SE-EE-ESEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred EEccCCeEEcceEEEecCCCCCcceE-EE-EeeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 88999999999999753 5776 74 578999999999999888777765432 7888888885
No 21
>PLN02480 Probable pectinesterase
Probab=97.33 E-value=0.0061 Score=59.10 Aligned_cols=121 Identities=23% Similarity=0.344 Sum_probs=78.0
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCce-EEe---------CCCeEEEEeeccEEEEe
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASV-HIA---------GGPCITVQYVTNIIIHG 172 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~-~I~---------~G~~i~i~~a~NVIIrn 172 (283)
|+++||.+ +..++++|=..|+-+ +.|.| ++|+||.|.+... .|. .+..++| .+++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEe
Confidence 68888753 233555554556444 67778 5789999988543 343 1234556 689999999
Q ss_pred eEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCCCc-----------------eecccCCc
Q 023390 173 INIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGL-----------------IDAIHGST 234 (283)
Q Consensus 173 L~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~Dgl-----------------iDv~~gs~ 234 (283)
|+|++..+.+. ....+.-|+-+. .+.++-+.+|.|....|=| +|.+.|.-
T Consensus 139 LTf~Nta~~g~------------~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~gR~yf~~C~IeG~VDFIFG~g 206 (343)
T PLN02480 139 ISIRNDAPTGM------------AFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYKGRHYYHSCYIQGSIDFIFGRG 206 (343)
T ss_pred eEEEecCCCCC------------CCCCCCceEEEEecCCcEEEEeeEEecccceeEeCCCCEEEEeCEEEeeeeEEccce
Confidence 99998643211 011234566653 5889999999998877666 45555555
Q ss_pred eEEEEcceecc
Q 023390 235 AITISNNYMTH 245 (283)
Q Consensus 235 ~ITISnn~f~~ 245 (283)
..-+.+|.|..
T Consensus 207 ~a~fe~C~i~s 217 (343)
T PLN02480 207 RSIFHNCEIFV 217 (343)
T ss_pred eEEEEccEEEE
Confidence 66666666663
No 22
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.20 E-value=0.013 Score=57.56 Aligned_cols=115 Identities=15% Similarity=0.170 Sum_probs=81.5
Q ss_pred HHHhhhcCCCeEEEEeeeeEEEeCceEEecCCcEEEeeCCceEEe--CCCeEEE---------EeeccEEEEeeEEEecc
Q 023390 111 LRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIA--GGPCITV---------QYVTNIIIHGINIHDCK 179 (283)
Q Consensus 111 Lr~av~~~~P~~IvF~~~g~I~L~~~L~i~snkTI~G~ga~~~I~--~G~~i~i---------~~a~NVIIrnL~i~~~~ 179 (283)
|..|+.+-. -|..+-+-+..++++|.|.+..+|+|+||-+.|. ++.++++ .+-.+|.+.|++|..-
T Consensus 57 le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 777776543 3444555567778899999999999999998874 3444553 3567999999999841
Q ss_pred cCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCCCceecccCCceEEEEcceecccCeEE
Q 023390 180 RGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVM 250 (283)
Q Consensus 180 ~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~DgliDv~~gs~~ITISnn~f~~H~k~~ 250 (283)
..--|+-+...+++.+.-|+|+...--.++.. ....|..|+|..-+|++
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi 182 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGI 182 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEe
Confidence 12457777888999999999998765555532 44566666666666654
No 23
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.20 E-value=0.0059 Score=60.37 Aligned_cols=118 Identities=22% Similarity=0.325 Sum_probs=85.3
Q ss_pred eEEEEeeeeEEEeCceEEecCCcEEEeeCCceE------Ee-C----CCeEEEEeeccEEEEeeEEEecccCCCceeecC
Q 023390 121 LWIIFARDMVITLKEELIMNSFKTIDGRGASVH------IA-G----GPCITVQYVTNIIIHGINIHDCKRGGNANVRDS 189 (283)
Q Consensus 121 ~~IvF~~~g~I~L~~~L~i~snkTI~G~ga~~~------I~-~----G~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~ 189 (283)
.||.|.. -..|.|...=||+|+|..-- .. + ..-|.+.+++||.|++|++++.
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS----------- 176 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS----------- 176 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC-----------
Confidence 4777641 13466655678899886310 00 0 1236788999999999999973
Q ss_pred CCccccCcCCCCCeEEeeCCceEEEeeeeeec-----CCCCceecccCCceEEEEcceecccCeEEEeecCCCcCCCCce
Q 023390 190 PSHYGWRTISDGDGVSIFGGSHVWVDHCSLSN-----CNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNM 264 (283)
Q Consensus 190 ~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~~D~~~ 264 (283)
..=.|.+..++||.|++.++.. -.||. | ...|++|+|.+|.|..-+.+.-+++.. -
T Consensus 177 ----------p~w~i~~~~~~~v~i~~v~I~~~~~spNtDGi-d-i~~s~nV~I~n~~I~~GDDcIaiksg~-------~ 237 (404)
T PLN02188 177 ----------KFFHIALVECRNFKGSGLKISAPSDSPNTDGI-H-IERSSGVYISDSRIGTGDDCISIGQGN-------S 237 (404)
T ss_pred ----------CCeEEEEEccccEEEEEEEEeCCCCCCCCCcE-e-eeCcccEEEEeeEEeCCCcEEEEccCC-------c
Confidence 2246778899999999999886 46776 7 457999999999999999888886542 1
Q ss_pred eEEEEceEEc
Q 023390 265 QVTIAFNHFG 274 (283)
Q Consensus 265 ~VTih~N~F~ 274 (283)
+|++.++.+.
T Consensus 238 nI~I~n~~c~ 247 (404)
T PLN02188 238 QVTITRIRCG 247 (404)
T ss_pred cEEEEEEEEc
Confidence 6777777764
No 24
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.08 E-value=0.0036 Score=50.83 Aligned_cols=105 Identities=24% Similarity=0.317 Sum_probs=45.9
Q ss_pred eEEEEeeccEEEEeeEEEecccCCCce-eecCCC-ccc-cCcCCCCCeEEeeCCceEEEeeeeeecCCCCceecccCCce
Q 023390 159 CITVQYVTNIIIHGINIHDCKRGGNAN-VRDSPS-HYG-WRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTA 235 (283)
Q Consensus 159 ~i~i~~a~NVIIrnL~i~~~~~~g~~~-ir~~~~-~~g-~r~~~~~DaI~I~gs~nVWIDHcs~s~~~DgliDv~~gs~~ 235 (283)
||.+.+..++.|++.+|++... .+. +..... .+- ..-.....+|.+.+..++.|+.|.|+... ..+.+. .+..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~--~gi~~~~~~~~~i~n~~i~~~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~-~~~~ 77 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGG--DGIHVSGSSNITIENCTISNGGYGIYVSGGSNVTISNNTISDNG-SGIYVS-GSSN 77 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSS--ECEEE-SSCESEEES-EEESSTTSEEEECCES-EEES-EEES-S-EEEECC-S-CS
T ss_pred EEEEECCcCeEEeeeEEEeCCC--eEEEEEcCCCeEEECeEEECCCcEEEEecCCCeEEECeEEEEcc-ceEEEE-ecCC
Confidence 4777788899999999996421 111 100000 000 00001344555555555555555555555 222322 4555
Q ss_pred EEEEcceecccCe-EEEeecCCCcCCCCceeEEEEceEEc
Q 023390 236 ITISNNYMTHHNK-VMLLGHSDTFTQDKNMQVTIAFNHFG 274 (283)
Q Consensus 236 ITISnn~f~~H~k-~~LiG~sd~~~~D~~~~VTih~N~F~ 274 (283)
++|++|.|.+... ++.+.. ....+++.+|.|.
T Consensus 78 ~~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~ 110 (158)
T PF13229_consen 78 ITIENNRIENNGDYGIYISN-------SSSNVTIENNTIH 110 (158)
T ss_dssp -EEES-EEECSSS-SCE-TC-------EECS-EEES-EEE
T ss_pred ceecCcEEEcCCCccEEEec-------cCCCEEEEeEEEE
Confidence 5555555554443 333321 1236888888885
No 25
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=97.05 E-value=0.0064 Score=62.16 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=69.5
Q ss_pred CeEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCCCcee---------
Q 023390 158 PCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLID--------- 228 (283)
Q Consensus 158 ~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~DgliD--------- 228 (283)
.++..+.++|+.|+||+|..-.+ ...||+.+.+++||-|+-|.|+.+.|-..=
T Consensus 262 ~~~h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~ 323 (542)
T COG5434 262 WTVHPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGK 323 (542)
T ss_pred EEEeeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecCCceEEeecccCCccc
Confidence 35667789999999999984111 267999999999999999999996654321
Q ss_pred -cccCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEEceEEc
Q 023390 229 -AIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFG 274 (283)
Q Consensus 229 -v~~gs~~ITISnn~f~~H~k~~LiG~sd~~~~D~~~~VTih~N~F~ 274 (283)
....+.+|+|++|+|..-.-+..+|+.-.. ....|++-.|.|-
T Consensus 324 ~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~g---gv~ni~ved~~~~ 367 (542)
T COG5434 324 KGYGPSRNIVIRNCYFSSGHGGLVLGSEMGG---GVQNITVEDCVMD 367 (542)
T ss_pred ccccccccEEEecceecccccceEeeeecCC---ceeEEEEEeeeec
Confidence 112357899999999965556666654321 2457888888883
No 26
>PLN02197 pectinesterase
Probab=96.87 E-value=0.073 Score=55.15 Aligned_cols=152 Identities=27% Similarity=0.418 Sum_probs=88.2
Q ss_pred Cccccc--cccccccCcccccCCccCCCCCeE---EEEcCCCCCCCCCCCch---hHHHhhhc----CCCeEEEEeeeeE
Q 023390 63 DPKWEE--NRQQLADCAIGFGKQAIGGKDGKI---YVVTDSGDDDPVNPKPG---TLRYAVIQ----DEPLWIIFARDMV 130 (283)
Q Consensus 63 ~~~w~~--~r~~la~~a~GfG~~ttGG~gG~v---~~VT~~~d~d~~~~~pG---tLr~av~~----~~P~~IvF~~~g~ 130 (283)
.|.|-. +|+-|+ +.+.|.++-||.++.+ ++|.- | +.| |+.+||.. ...++|++=..|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~--d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVAK--D------GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEcC--C------CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 588864 466664 3455566666665542 33331 1 333 67888853 3345555555565
Q ss_pred EEeCceEEe---cCCcEEEeeCCceE-Ee--------CCC------eEEEEeeccEEEEeeEEEecccCCCceeecCCCc
Q 023390 131 ITLKEELIM---NSFKTIDGRGASVH-IA--------GGP------CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSH 192 (283)
Q Consensus 131 I~L~~~L~i---~snkTI~G~ga~~~-I~--------~G~------~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~ 192 (283)
..+.+.| .+|+|+.|.|..-+ |. +|. .+.+ .+++++.+||+|++... +
T Consensus 314 --Y~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag--~--------- 379 (588)
T PLN02197 314 --YNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTAG--P--------- 379 (588)
T ss_pred --EEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCCC--C---------
Confidence 3466777 46899999887643 22 221 2223 68999999999998532 1
Q ss_pred cccCcCCCCCeEEee-CCceEEEeeeeeecCCCCc-----------------eecccCCceEEEEcceec
Q 023390 193 YGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGL-----------------IDAIHGSTAITISNNYMT 244 (283)
Q Consensus 193 ~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~Dgl-----------------iDv~~gs~~ITISnn~f~ 244 (283)
...-|+-+. .+...-+.+|.|....|=| +|.+-|.-..-+++|.|.
T Consensus 380 ------~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~ 443 (588)
T PLN02197 380 ------MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIV 443 (588)
T ss_pred ------CCCceEEEEecCCcEEEEEeEEEecCcceEecCCCEEEEeeEEEecccccccceeeeeecCEEE
Confidence 112233333 3567777777777655444 444455555666666664
No 27
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.58 E-value=0.016 Score=58.07 Aligned_cols=107 Identities=16% Similarity=0.205 Sum_probs=59.3
Q ss_pred cEEEeeCCceEEeCCCeEEEEeeccEEEEeeEEEecccCC------CceeecCCCccccCcCCCCCeEEeeCCceEEEee
Q 023390 143 KTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGG------NANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDH 216 (283)
Q Consensus 143 kTI~G~ga~~~I~~G~~i~i~~a~NVIIrnL~i~~~~~~g------~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDH 216 (283)
+||+|.|.+-.-. -.+|.++.++++.|++.+|++.--.| ...|.+.. -.+ ....+|.++.++++.|.+
T Consensus 122 LtIdGsG~dl~~r-dAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~-I~g----~~~~~I~lw~S~g~~V~~ 195 (455)
T TIGR03808 122 LTLDGGGIPLPQR-RGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNT-ITQ----IAVTAIVSFDALGLIVAR 195 (455)
T ss_pred eEEEeCCCcccCC-CCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecce-Eec----cccceEEEeccCCCEEEC
Confidence 3555655442222 24677778888888888888641010 01111110 011 123446667777788888
Q ss_pred eeeecCCCCceecc-----------------------------------cCCceEEEEcceecccCeEEEeecC
Q 023390 217 CSLSNCNDGLIDAI-----------------------------------HGSTAITISNNYMTHHNKVMLLGHS 255 (283)
Q Consensus 217 cs~s~~~DgliDv~-----------------------------------~gs~~ITISnn~f~~H~k~~LiG~s 255 (283)
+.++.+.|+.|-+. ..+.+++|++|.++++.+--+.+.+
T Consensus 196 N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~ns 269 (455)
T TIGR03808 196 NTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNS 269 (455)
T ss_pred CEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEc
Confidence 88887777433322 1366788888888887744344433
No 28
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=96.41 E-value=0.015 Score=47.15 Aligned_cols=90 Identities=27% Similarity=0.317 Sum_probs=52.5
Q ss_pred CCeEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCCCceecccCCceE
Q 023390 157 GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAI 236 (283)
Q Consensus 157 G~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~DgliDv~~gs~~I 236 (283)
+.+|.+....++.|++..|++. ..++.+.++.++.|.+|.+..+.+.-+.+...+..+
T Consensus 45 ~~gi~~~~~~~~~i~~~~~~~~----------------------~~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~ 102 (158)
T PF13229_consen 45 GYGIYVSGGSNVTISNNTISDN----------------------GSGIYVSGSSNITIENNRIENNGDYGIYISNSSSNV 102 (158)
T ss_dssp TTSEEEECCES-EEES-EEES-----------------------SEEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-
T ss_pred CcEEEEecCCCeEEECeEEEEc----------------------cceEEEEecCCceecCcEEEcCCCccEEEeccCCCE
Confidence 3457777778888888888742 157777778888888888888887444543226678
Q ss_pred EEEcceecccC-eEEEeecCCCcCCCCceeEEEEceEEc
Q 023390 237 TISNNYMTHHN-KVMLLGHSDTFTQDKNMQVTIAFNHFG 274 (283)
Q Consensus 237 TISnn~f~~H~-k~~LiG~sd~~~~D~~~~VTih~N~F~ 274 (283)
+|.+|.|.+.. .++.+.... ...+++.+|.|.
T Consensus 103 ~i~~n~~~~~~~~gi~~~~~~------~~~~~i~~n~i~ 135 (158)
T PF13229_consen 103 TIENNTIHNNGGSGIYLEGGS------SPNVTIENNTIS 135 (158)
T ss_dssp EEES-EEECCTTSSCEEEECC--------S-EEECEEEE
T ss_pred EEEeEEEEeCcceeEEEECCC------CCeEEEEEEEEE
Confidence 88888888765 444444332 236777777774
No 29
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=96.37 E-value=0.052 Score=48.58 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=13.5
Q ss_pred CeEEEEeeccEEEEeeEEEe
Q 023390 158 PCITVQYVTNIIIHGINIHD 177 (283)
Q Consensus 158 ~~i~i~~a~NVIIrnL~i~~ 177 (283)
.||.+..++++.|++-.|++
T Consensus 58 ~GI~~~~s~~~~i~~n~i~~ 77 (236)
T PF05048_consen 58 YGIHLMGSSNNTIENNTISN 77 (236)
T ss_pred eEEEEEccCCCEEEeEEEEc
Confidence 35666667777777777765
No 30
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.37 E-value=0.15 Score=51.18 Aligned_cols=117 Identities=19% Similarity=0.249 Sum_probs=76.3
Q ss_pred hHHHhhhcC--CCeEEEEeeeeEEEeCceEEecCCcEEEeeCCce--EEeCCCeEE-EEeeccEEEEeeEEEecccCCCc
Q 023390 110 TLRYAVIQD--EPLWIIFARDMVITLKEELIMNSFKTIDGRGASV--HIAGGPCIT-VQYVTNIIIHGINIHDCKRGGNA 184 (283)
Q Consensus 110 tLr~av~~~--~P~~IvF~~~g~I~L~~~L~i~snkTI~G~ga~~--~I~~G~~i~-i~~a~NVIIrnL~i~~~~~~g~~ 184 (283)
.|+.|+.+- +--.|++.. |+. +..+|.+.+++||.|+.... .|.++.++. -..++||-|++++|++ +|.
T Consensus 56 ALQaAIdaAa~gG~tV~Lp~-G~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdG---sG~- 129 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLALPP-GVY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDG---GGI- 129 (455)
T ss_pred HHHHHHHHhhcCCCEEEECC-Cce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEe---CCC-
Confidence 488887542 123355543 322 34678999999999985432 254333333 3479999999999996 321
Q ss_pred eeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCC-CCceecccCCceEEEEcceeccc
Q 023390 185 NVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCN-DGLIDAIHGSTAITISNNYMTHH 246 (283)
Q Consensus 185 ~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~-DgliDv~~gs~~ITISnn~f~~H 246 (283)
......-+|.+.+++++-|.+|.|.... -|. .+ +++. ..|++|.+...
T Consensus 130 -----------dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI-~L-~~~~-~~I~~N~I~g~ 178 (455)
T TIGR03808 130 -----------PLPQRRGLIHCQGGRDVRITDCEITGSGGNGI-WL-ETVS-GDISGNTITQI 178 (455)
T ss_pred -----------cccCCCCEEEEccCCceEEEeeEEEcCCcceE-EE-EcCc-ceEecceEecc
Confidence 1112445889989999999999999884 776 32 3455 67777766643
No 31
>PLN02176 putative pectinesterase
Probab=96.23 E-value=0.15 Score=49.64 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=74.1
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-Ee--CC------CeEEEEeeccEEEEee
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA--GG------PCITVQYVTNIIIHGI 173 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~--~G------~~i~i~~a~NVIIrnL 173 (283)
|+.+||.. +..++++|-..|+-+ +.|.| ++|+||.|.|...+ |. ++ +.+.+ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 67777743 233555555556444 66777 57899999987644 32 11 23445 6899999999
Q ss_pred EEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCCCc-----------------eecccCCce
Q 023390 174 NIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGL-----------------IDAIHGSTA 235 (283)
Q Consensus 174 ~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~Dgl-----------------iDv~~gs~~ 235 (283)
+|++..+..+ ..+...+-|+-+. .+..+-+.+|.|....|=| +|.+-|.-.
T Consensus 130 T~~Nt~~~~~-----------~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~gRqyf~~CyIeG~VDFIFG~a~ 198 (340)
T PLN02176 130 TFKNTYNIAS-----------NSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGKGRHYYKRCVISGGIDFIFGYAQ 198 (340)
T ss_pred EEEeCCCccC-----------CCCCCccceEEEEecCccEEEEccEEecccceeEeCCcCEEEEecEEEecccEEecCce
Confidence 9998653110 0001123344433 3678888888888765544 455555556
Q ss_pred EEEEcceec
Q 023390 236 ITISNNYMT 244 (283)
Q Consensus 236 ITISnn~f~ 244 (283)
.-+.+|.|.
T Consensus 199 a~Fe~C~I~ 207 (340)
T PLN02176 199 SIFEGCTLK 207 (340)
T ss_pred EEEeccEEE
Confidence 667777775
No 32
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=95.65 E-value=0.31 Score=43.61 Aligned_cols=104 Identities=24% Similarity=0.249 Sum_probs=71.6
Q ss_pred CeEEEEeeccEEEEeeEEEecccCCCce-eecCCC-cc-ccCcCCCCCeEEeeCCceEEEeeeeeecCCCCceecccCCc
Q 023390 158 PCITVQYVTNIIIHGINIHDCKRGGNAN-VRDSPS-HY-GWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGST 234 (283)
Q Consensus 158 ~~i~i~~a~NVIIrnL~i~~~~~~g~~~-ir~~~~-~~-g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~DgliDv~~gs~ 234 (283)
.++.+..+.++.|++.+|++... +. +..+.. .+ +..-.....||.+..+.+..|..+.|+....|+.- ..+.
T Consensus 36 ~gi~~~~s~~~~I~~n~i~~~~~---GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l--~~s~ 110 (236)
T PF05048_consen 36 DGIYVENSDNNTISNNTISNNRY---GIHLMGSSNNTIENNTISNNGYGIYLMGSSNNTISNNTISNNGYGIYL--YGSS 110 (236)
T ss_pred CEEEEEEcCCeEEEeeEEECCCe---EEEEEccCCCEEEeEEEEccCCCEEEEcCCCcEEECCEecCCCceEEE--eeCC
Confidence 45677789999999999886521 11 111110 00 11111234899999888779999999998886632 4678
Q ss_pred eEEEEcceecccCeEEEeecCCCcCCCCceeEEEEceEEc
Q 023390 235 AITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFG 274 (283)
Q Consensus 235 ~ITISnn~f~~H~k~~LiG~sd~~~~D~~~~VTih~N~F~ 274 (283)
..+|++|.|.+...++.+-.+. +.++.+|.|.
T Consensus 111 ~~~I~~N~i~~~~~GI~l~~s~--------~n~I~~N~i~ 142 (236)
T PF05048_consen 111 NNTISNNTISNNGYGIYLSSSS--------NNTITGNTIS 142 (236)
T ss_pred ceEEECcEEeCCCEEEEEEeCC--------CCEEECeEEe
Confidence 8999999999888887776653 6788888885
No 33
>PLN02682 pectinesterase family protein
Probab=95.60 E-value=0.29 Score=48.11 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=72.1
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-EeC----------C--------CeEEEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAG----------G--------PCITVQ 163 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~~----------G--------~~i~i~ 163 (283)
|+.+||.. +..+++++=..|+ ..+.|.| ++|+||.|.|..-+ |.. | +.+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~--Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGT--YREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCce--eeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 57777743 2224444444454 3466777 58999999987533 321 1 12334
Q ss_pred eeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCC-----------------C
Q 023390 164 YVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------G 225 (283)
Q Consensus 164 ~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~D-----------------g 225 (283)
.+++++.+||+|++..+..+ .| ..+.-|+.+. .+.++-+.+|.|....| |
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~---------~g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG 228 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPP---------PG---ALGKQAVALRISADTAAFYGCKFLGAQDTLYDHLGRHYFKDCYIEG 228 (369)
T ss_pred ECCCeEEEeeEEEcccccCC---------CC---CCcccEEEEEecCCcEEEEcceEeccccceEECCCCEEEEeeEEcc
Confidence 68999999999998653110 01 1122233333 36888888888887655 4
Q ss_pred ceecccCCceEEEEcceec
Q 023390 226 LIDAIHGSTAITISNNYMT 244 (283)
Q Consensus 226 liDv~~gs~~ITISnn~f~ 244 (283)
.+|.+-|.-..-+.+|.|.
T Consensus 229 ~VDFIFG~g~a~Fe~C~I~ 247 (369)
T PLN02682 229 SVDFIFGNGLSLYEGCHLH 247 (369)
T ss_pred cccEEecCceEEEEccEEE
Confidence 4555566666677777775
No 34
>PLN02432 putative pectinesterase
Probab=95.60 E-value=0.3 Score=46.55 Aligned_cols=115 Identities=18% Similarity=0.327 Sum_probs=70.0
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceEE-e--------CCCeEEEEeeccEEEEee
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A--------GGPCITVQYVTNIIIHGI 173 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~I-~--------~G~~i~i~~a~NVIIrnL 173 (283)
|+.+||.. +..++++|=..|+ ..+.|.| .+|+||.|.+..-++ . .-+.+.+ .++|++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~--Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGI--YREKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCce--eEEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence 57777743 2224444444553 3566777 589999999865433 2 1123444 6899999999
Q ss_pred EEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCCCc-----------------eecccCCceE
Q 023390 174 NIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGL-----------------IDAIHGSTAI 236 (283)
Q Consensus 174 ~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~Dgl-----------------iDv~~gs~~I 236 (283)
+|++..+.+ ...-|+.+ .+.++-+.+|.|....|=| +|.+-|.-..
T Consensus 102 t~~Nt~g~~----------------~QAvAl~v-~gDr~~f~~c~~~G~QDTLy~~~gr~yf~~c~I~G~VDFIFG~g~a 164 (293)
T PLN02432 102 TIQNTFGSS----------------GKAVALRV-AGDRAAFYGCRILSYQDTLLDDTGRHYYRNCYIEGATDFICGNAAS 164 (293)
T ss_pred EEEeCCCCC----------------CceEEEEE-cCCcEEEEcceEecccceeEECCCCEEEEeCEEEecccEEecCceE
Confidence 999853210 12233333 3678888888888766555 4444555556
Q ss_pred EEEcceec
Q 023390 237 TISNNYMT 244 (283)
Q Consensus 237 TISnn~f~ 244 (283)
-+.+|.|.
T Consensus 165 ~Fe~c~i~ 172 (293)
T PLN02432 165 LFEKCHLH 172 (293)
T ss_pred EEEeeEEE
Confidence 66777775
No 35
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=95.13 E-value=0.84 Score=42.53 Aligned_cols=121 Identities=20% Similarity=0.236 Sum_probs=71.2
Q ss_pred hhHHHhhhcCCCeEEEEeeeeEEEeC----ceEEecCCcEEEeeCCc-----eEEeC--------CC-------eEEEEe
Q 023390 109 GTLRYAVIQDEPLWIIFARDMVITLK----EELIMNSFKTIDGRGAS-----VHIAG--------GP-------CITVQY 164 (283)
Q Consensus 109 GtLr~av~~~~P~~IvF~~~g~I~L~----~~L~i~snkTI~G~ga~-----~~I~~--------G~-------~i~i~~ 164 (283)
-||.+|+.+-.|--++.=..|+.+-. -+|.+.+.+||.|..+. +.+.+ |. .++|..
T Consensus 16 ~Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~ 95 (246)
T PF07602_consen 16 KTITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIIL 95 (246)
T ss_pred HHHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEe
Confidence 46778886544433333244555433 25778888888885432 11111 11 144556
Q ss_pred eccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecC-CCCceec----ccCCceEEEE
Q 023390 165 VTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC-NDGLIDA----IHGSTAITIS 239 (283)
Q Consensus 165 a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~-~DgliDv----~~gs~~ITIS 239 (283)
+++..|++++|++..+ ..+-||.|+++ +.-|..|+|+.+ .+|.... .....+++|+
T Consensus 96 ~~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~ 156 (246)
T PF07602_consen 96 ANNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVIS 156 (246)
T ss_pred cCCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEee
Confidence 7888888888886321 24567888766 777888888885 5554331 2234566677
Q ss_pred cceecccCe
Q 023390 240 NNYMTHHNK 248 (283)
Q Consensus 240 nn~f~~H~k 248 (283)
.|.+.....
T Consensus 157 GN~~~~~~~ 165 (246)
T PF07602_consen 157 GNSIYFNKT 165 (246)
T ss_pred cceEEecCc
Confidence 776664443
No 36
>PLN02665 pectinesterase family protein
Probab=94.97 E-value=0.63 Score=45.73 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=64.3
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-EeCC-----------CeEEEEeeccEEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAGG-----------PCITVQYVTNIII 170 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~~G-----------~~i~i~~a~NVII 170 (283)
|+.+||.. +..++|+|=..|+- .+.|.| ++|+|+.|.+...+ |..+ +.+.+ .+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY--~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEY--NEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEE--EEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeEE
Confidence 67778743 23355665556644 467777 57889999976532 3211 22334 6899999
Q ss_pred EeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCCCcee
Q 023390 171 HGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLID 228 (283)
Q Consensus 171 rnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~DgliD 228 (283)
+||+|++..+.+.+ ...| ...-|+.+. +.++-+.+|.|....|=|++
T Consensus 159 ~nitf~Nta~~~~~------~~~g----~QAVAl~v~-gDka~f~~C~f~G~QDTL~~ 205 (366)
T PLN02665 159 ANIIIKNSAPRPDG------KRKG----AQAVAMRIS-GDKAAFYNCRFIGFQDTLCD 205 (366)
T ss_pred EeeEEEeCCCCcCC------CCCC----cceEEEEEc-CCcEEEEcceeccccceeEe
Confidence 99999986542110 0001 123444443 57888889988877666654
No 37
>PLN02634 probable pectinesterase
Probab=94.93 E-value=0.69 Score=45.35 Aligned_cols=121 Identities=19% Similarity=0.283 Sum_probs=71.4
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceEEe-----------CC--------CeEEEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHIA-----------GG--------PCITVQ 163 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~I~-----------~G--------~~i~i~ 163 (283)
|+.+||.. +..+++++=..|+ ..+.|.| ++|+||.|.|...++. +| +.+.+
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGF--YREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCce--EEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 45666632 2224444444454 4466777 5789999998765432 11 12333
Q ss_pred eeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCCCc-----------------
Q 023390 164 YVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGL----------------- 226 (283)
Q Consensus 164 ~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~Dgl----------------- 226 (283)
.+++++.+||+|++..+... .|..+ ...-|+.+ .+.++-+.+|.|....|=|
T Consensus 147 ~a~~F~a~niTf~Nta~~~~---------~g~~~-~QAVAl~v-~gDra~f~~C~f~G~QDTL~~~~gR~yf~~CyIeG~ 215 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPM---------PGMQG-WQAVAFRI-SGDKAFFFGCGFYGAQDTLCDDAGRHYFKECYIEGS 215 (359)
T ss_pred ECCCeEEEeCeEEeCCccCC---------CCCCC-CceEEEEe-cCCcEEEEEeEEecccceeeeCCCCEEEEeeEEccc
Confidence 68999999999998653110 01100 12234444 3677888899888765554
Q ss_pred eecccCCceEEEEcceec
Q 023390 227 IDAIHGSTAITISNNYMT 244 (283)
Q Consensus 227 iDv~~gs~~ITISnn~f~ 244 (283)
+|.+-|.-..-+.+|.|.
T Consensus 216 VDFIFG~g~a~Fe~C~I~ 233 (359)
T PLN02634 216 IDFIFGNGRSMYKDCELH 233 (359)
T ss_pred ccEEcCCceEEEeccEEE
Confidence 455555556667777776
No 38
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=94.90 E-value=0.43 Score=48.95 Aligned_cols=116 Identities=18% Similarity=0.325 Sum_probs=67.4
Q ss_pred hHHHhhhc-----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceEE-eC------C------CeEEEEeeccE
Q 023390 110 TLRYAVIQ-----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-AG------G------PCITVQYVTNI 168 (283)
Q Consensus 110 tLr~av~~-----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~I-~~------G------~~i~i~~a~NV 168 (283)
|+.+||.. ...+++++=..|+. .+.|.| .+|+||.|.|..-+| .+ | +.+.+ .++|+
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v-~~~~F 315 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGTY--HENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAA-MGDGF 315 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCee--EEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEE-EcCCe
Confidence 67778852 22355555556753 466777 579999999876443 21 1 12223 68999
Q ss_pred EEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCC-----------------Cceeccc
Q 023390 169 IIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCND-----------------GLIDAIH 231 (283)
Q Consensus 169 IIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~D-----------------gliDv~~ 231 (283)
+.+||+|++...... ...-|+.+ .+..+.+.+|.|....| |.+|.+-
T Consensus 316 ~a~nitf~Ntag~~~---------------~QAVALrv-~gDr~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIF 379 (529)
T PLN02170 316 IARDITFVNSAGPNS---------------EQAVALRV-GSDKSVVYRCSVEGYQDSLYTHSKRQFYRETDITGTVDFIF 379 (529)
T ss_pred EEEeeEEEecCCCCC---------------CceEEEEe-cCCcEEEEeeeEeccCCcceeCCCCEEEEeeEEccccceec
Confidence 999999998532100 11233333 24566666666665443 3344444
Q ss_pred CCceEEEEcceec
Q 023390 232 GSTAITISNNYMT 244 (283)
Q Consensus 232 gs~~ITISnn~f~ 244 (283)
|.-..-+++|.|.
T Consensus 380 G~a~avFq~C~I~ 392 (529)
T PLN02170 380 GNSAVVFQSCNIA 392 (529)
T ss_pred ccceEEEeccEEE
Confidence 5555556666554
No 39
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=94.76 E-value=0.58 Score=48.15 Aligned_cols=117 Identities=21% Similarity=0.348 Sum_probs=74.2
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-EeC------C------CeEEEEeeccEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAG------G------PCITVQYVTNII 169 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~~------G------~~i~i~~a~NVI 169 (283)
|+.+||.. +..++|++=..|+. .+.|.| .+|+||.|.|...+ |.+ | +.+.+ .+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVY--EENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCcee--EEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 67777753 34466666566754 466777 47999999997643 332 2 12334 589999
Q ss_pred EEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCC-----------------CceecccC
Q 023390 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCND-----------------GLIDAIHG 232 (283)
Q Consensus 170 IrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~D-----------------gliDv~~g 232 (283)
.+||+|++..... ....-|+.+ .+.++-+-+|.|....| |.+|.+-|
T Consensus 321 a~nitf~Ntag~~---------------~~QAVAl~v-~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 384 (541)
T PLN02416 321 ARDITIENTAGPE---------------KHQAVALRV-NADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYIFG 384 (541)
T ss_pred EEeeEEEECCCCC---------------CCceEEEEE-cCccEEEEcceEecccchhccCCCceEEEeeEEeeccceeec
Confidence 9999999853210 012234444 35777788888776544 44566666
Q ss_pred CceEEEEcceecc
Q 023390 233 STAITISNNYMTH 245 (283)
Q Consensus 233 s~~ITISnn~f~~ 245 (283)
.-.+-+++|.|..
T Consensus 385 ~a~avfq~c~i~~ 397 (541)
T PLN02416 385 NAAVVFQACNIVS 397 (541)
T ss_pred cceEEEeccEEEE
Confidence 6777778887753
No 40
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=94.73 E-value=0.48 Score=48.88 Aligned_cols=115 Identities=17% Similarity=0.282 Sum_probs=71.5
Q ss_pred hHHHhhhc-----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-Ee-------CC------CeEEEEeecc
Q 023390 110 TLRYAVIQ-----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA-------GG------PCITVQYVTN 167 (283)
Q Consensus 110 tLr~av~~-----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~-------~G------~~i~i~~a~N 167 (283)
|+.+||.. .+.++|||=..|+.+ +.|.| ..|+||.|.|..-+ |. .| +.+.+ .+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCC
Confidence 57777742 123455555556543 56666 57999999987644 32 12 12233 6899
Q ss_pred EEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCC-----------------CCceec
Q 023390 168 IIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCN-----------------DGLIDA 229 (283)
Q Consensus 168 VIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~-----------------DgliDv 229 (283)
++.+||+|++.. |+ ...-|+-+. .+..+-+.+|.|.... .|.+|.
T Consensus 332 f~a~~it~~Nta--g~---------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDF 394 (553)
T PLN02708 332 FMARDLTIQNTA--GP---------------DAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDF 394 (553)
T ss_pred eEEEeeEEEcCC--CC---------------CCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCE
Confidence 999999999843 11 112344443 4677788888877643 455666
Q ss_pred ccCCceEEEEcceec
Q 023390 230 IHGSTAITISNNYMT 244 (283)
Q Consensus 230 ~~gs~~ITISnn~f~ 244 (283)
+-|.-.+-+++|.|.
T Consensus 395 IFG~a~avfq~c~i~ 409 (553)
T PLN02708 395 IFGNSAAVFQDCAIL 409 (553)
T ss_pred EecCceEEEEccEEE
Confidence 666677777777776
No 41
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=94.64 E-value=0.59 Score=48.21 Aligned_cols=116 Identities=17% Similarity=0.340 Sum_probs=72.8
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceEE-e------CCC------eEEEEeeccEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GGP------CITVQYVTNII 169 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~I-~------~G~------~i~i~~a~NVI 169 (283)
|+.+||.. ...|+++|=..|+ .++.|.| .+|+||.|.|...+| . +|. .+.+ .+++++
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~~~~F~ 326 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGT--YKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAA-VGDGFI 326 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCce--eeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEE-ECCceE
Confidence 67777753 3345555555665 4467777 479999999876443 2 121 1223 589999
Q ss_pred EEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCC-----------------CceecccC
Q 023390 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCND-----------------GLIDAIHG 232 (283)
Q Consensus 170 IrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~D-----------------gliDv~~g 232 (283)
.+||.|++... +. ....-|+.+ .+..+-+.+|.|....| |.+|.+-|
T Consensus 327 a~nitf~Ntag--~~-------------~~QAVAlrv-~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 390 (548)
T PLN02301 327 AQDIWFQNTAG--PE-------------KHQAVALRV-SADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFG 390 (548)
T ss_pred EEeeEEEECCC--CC-------------CCceEEEEe-cCCcEEEEeeeeeeccccceecCCcEEEEeeEEEeccceecc
Confidence 99999998531 10 011233333 35778888888877544 45566666
Q ss_pred CceEEEEcceec
Q 023390 233 STAITISNNYMT 244 (283)
Q Consensus 233 s~~ITISnn~f~ 244 (283)
.-..-+++|.|.
T Consensus 391 ~a~avfq~c~i~ 402 (548)
T PLN02301 391 NAAVVFQNCKIV 402 (548)
T ss_pred cceeEEeccEEE
Confidence 677777777776
No 42
>PLN02304 probable pectinesterase
Probab=94.61 E-value=1 Score=44.42 Aligned_cols=120 Identities=21% Similarity=0.252 Sum_probs=73.1
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-EeCC------------CeEEEEeeccEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAGG------------PCITVQYVTNII 169 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~~G------------~~i~i~~a~NVI 169 (283)
|+.+||.. +..+++|+=..|+ ..+.|.| ++|+||.|+|..-+ |... +.+.+ .++|++
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v-~a~~F~ 165 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGI--YYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV-FASNFI 165 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeE--eEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE-ECCCeE
Confidence 67788843 2334555445564 3467777 58999999987643 2210 12233 689999
Q ss_pred EEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCCCce-----------------eccc
Q 023390 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLI-----------------DAIH 231 (283)
Q Consensus 170 IrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~Dgli-----------------Dv~~ 231 (283)
.+||+|++..+... .| ....-|+.+. .+..+-+.+|.|....|=|+ |.+-
T Consensus 166 a~nITf~Nta~~~~---------~g---~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~gR~Yf~~CyIeG~VDFIF 233 (379)
T PLN02304 166 AKNISFMNVAPIPK---------PG---DVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIF 233 (379)
T ss_pred EEeeEEEecCCCCC---------CC---CCCccEEEEEecCCcEEEEeceEecccceeEeCCCCEEEEeeEEcccccEEe
Confidence 99999998653210 01 1122344443 46888888998887766554 4444
Q ss_pred CCceEEEEcceec
Q 023390 232 GSTAITISNNYMT 244 (283)
Q Consensus 232 gs~~ITISnn~f~ 244 (283)
|.-..-+.+|.|.
T Consensus 234 G~g~A~Fe~C~I~ 246 (379)
T PLN02304 234 GDARSLYENCRLI 246 (379)
T ss_pred ccceEEEEccEEE
Confidence 5555566666665
No 43
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=94.58 E-value=1.4 Score=45.98 Aligned_cols=116 Identities=18% Similarity=0.288 Sum_probs=72.7
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-EeC------C------CeEEEEeeccEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAG------G------PCITVQYVTNII 169 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~~------G------~~i~i~~a~NVI 169 (283)
|+.+||.. ...+++++=..|+.+ +.|.| .+|+||.|.|..-+ |.+ | +.+.+ .+++++
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 375 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVA-LGEGFM 375 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEE-EcCCEE
Confidence 67778753 223455554556443 56777 46899999987644 321 1 11223 689999
Q ss_pred EEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCCCc-----------------eeccc
Q 023390 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGL-----------------IDAIH 231 (283)
Q Consensus 170 IrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~Dgl-----------------iDv~~ 231 (283)
.+||+|++... + ...-|+-+. .+...-+.+|.|....|=| +|.+-
T Consensus 376 a~nitf~Ntag--~---------------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 438 (596)
T PLN02745 376 AKSMGFRNTAG--P---------------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIF 438 (596)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEeeEEeecccccccCCCcEEEEeeEEEeeccEEe
Confidence 99999998531 1 112333333 4688888888888765544 55556
Q ss_pred CCceEEEEcceecc
Q 023390 232 GSTAITISNNYMTH 245 (283)
Q Consensus 232 gs~~ITISnn~f~~ 245 (283)
|.-..-+++|.|.-
T Consensus 439 G~a~avf~~C~i~~ 452 (596)
T PLN02745 439 GDAAAIFQNCLIFV 452 (596)
T ss_pred cceeEEEEecEEEE
Confidence 66677777777763
No 44
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=94.58 E-value=0.59 Score=48.07 Aligned_cols=115 Identities=21% Similarity=0.346 Sum_probs=69.0
Q ss_pred hHHHhhhc------CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-EeC------C------CeEEEEeecc
Q 023390 110 TLRYAVIQ------DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAG------G------PCITVQYVTN 167 (283)
Q Consensus 110 tLr~av~~------~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~~------G------~~i~i~~a~N 167 (283)
|..+||.. +..+++++=..|+ ..+.|.| ++|+|+.|.|..-+ |.+ | +.+.+ .+++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v-~~~~ 313 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGI--YQENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGI-EGLH 313 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCE--eEEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEE-ECCC
Confidence 67778753 1224444444554 3456677 57999999987643 432 1 11223 6899
Q ss_pred EEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCCCc-----------------eec
Q 023390 168 IIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGL-----------------IDA 229 (283)
Q Consensus 168 VIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~Dgl-----------------iDv 229 (283)
++.+||+|++... + ..+-|+-+. .+....+.+|.|....|=| +|.
T Consensus 314 F~a~nitf~Ntag--~---------------~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDF 376 (539)
T PLN02995 314 FIAKGITFRNTAG--P---------------AKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQRQFYRECYIYGTVDF 376 (539)
T ss_pred eEEEeeEEEeCCC--C---------------CCCceEEEEEcCCceeEEcceEecccchhccCCCceEEEeeEEeeccce
Confidence 9999999998531 1 122344443 3677888888887765544 444
Q ss_pred ccCCceEEEEcceec
Q 023390 230 IHGSTAITISNNYMT 244 (283)
Q Consensus 230 ~~gs~~ITISnn~f~ 244 (283)
+-|.-..-+++|.|.
T Consensus 377 IFG~a~avf~~C~i~ 391 (539)
T PLN02995 377 IFGNAAAVFQNCIIL 391 (539)
T ss_pred EecccceEEeccEEE
Confidence 455555556666664
No 45
>PLN02916 pectinesterase family protein
Probab=94.34 E-value=0.73 Score=47.06 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=43.0
Q ss_pred hHHHhhhc-------CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-Ee------CCC------eEEEEeec
Q 023390 110 TLRYAVIQ-------DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GGP------CITVQYVT 166 (283)
Q Consensus 110 tLr~av~~-------~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~------~G~------~i~i~~a~ 166 (283)
|+.+||.. +..+++++=..|+.+ +.+.| .+|+||.|.|..-+ |. +|. .+.+ .++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~ 277 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SGD 277 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-ECC
Confidence 57777732 233555555556443 66777 46899999987643 32 121 2223 689
Q ss_pred cEEEEeeEEEecc
Q 023390 167 NIIIHGINIHDCK 179 (283)
Q Consensus 167 NVIIrnL~i~~~~ 179 (283)
+++.+||+|++..
T Consensus 278 ~F~A~nitf~Nta 290 (502)
T PLN02916 278 GFWARDITFENTA 290 (502)
T ss_pred CEEEEeeEEEeCC
Confidence 9999999999854
No 46
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=94.31 E-value=0.64 Score=47.83 Aligned_cols=116 Identities=21% Similarity=0.324 Sum_probs=67.1
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-EeC------C------CeEEEEeeccEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAG------G------PCITVQYVTNII 169 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~~------G------~~i~i~~a~NVI 169 (283)
|+.+||.. +..++++|=..|+. .+.+.| .+|+||.|.|..-+ |.+ | +.+. ..+++++
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY--~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~-v~~~~F~ 322 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVY--KENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVA-VSGRGFI 322 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCee--eEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEE-EEcCCeE
Confidence 56677743 23355555555643 455666 47999999987643 321 1 1122 3689999
Q ss_pred EEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCC-----------------CceecccC
Q 023390 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCND-----------------GLIDAIHG 232 (283)
Q Consensus 170 IrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~D-----------------gliDv~~g 232 (283)
.+||+|++... +. ....-|+.+ .+.++-+.+|.|....| |.+|.+-|
T Consensus 323 a~nit~~Ntag--~~-------------~~QAVAl~v-~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIFG 386 (537)
T PLN02506 323 ARDITFRNTAG--PQ-------------NHQAVALRV-DSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFG 386 (537)
T ss_pred EEeeEEEeCCC--CC-------------CCceEEEEe-cCCcEEEEcceeecccccceecCCceEEEeeEEecccceEcc
Confidence 99999998532 10 011233333 35667777777665443 44455555
Q ss_pred CceEEEEcceec
Q 023390 233 STAITISNNYMT 244 (283)
Q Consensus 233 s~~ITISnn~f~ 244 (283)
.-..-+++|.|.
T Consensus 387 ~a~avfq~C~i~ 398 (537)
T PLN02506 387 NGAAVLQNCKIY 398 (537)
T ss_pred CceeEEeccEEE
Confidence 555666666665
No 47
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=94.17 E-value=0.87 Score=46.70 Aligned_cols=116 Identities=18% Similarity=0.281 Sum_probs=70.2
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-Ee------CC------CeEEEEeeccEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GG------PCITVQYVTNII 169 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~------~G------~~i~i~~a~NVI 169 (283)
|+.+||.. +..+++++=..|+. ++.|.| .+|+||.|.|..-+ |. +| +.+.+ .+++++
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~~F~ 296 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAV-SGRGFI 296 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEE-ECCCeE
Confidence 56777743 22244444445644 466777 46899999987643 32 12 12223 689999
Q ss_pred EEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCC-----------------Cceeccc
Q 023390 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------GLIDAIH 231 (283)
Q Consensus 170 IrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~D-----------------gliDv~~ 231 (283)
.+||+|++..+ + ...-|+-+. .+...-+.+|.|....| |.+|.+-
T Consensus 297 a~nitf~Ntag--~---------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 359 (520)
T PLN02201 297 ARDITFQNTAG--P---------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECRITGTVDFIF 359 (520)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeEEeecccEEe
Confidence 99999998532 1 112333333 35777778888776544 4456566
Q ss_pred CCceEEEEcceecc
Q 023390 232 GSTAITISNNYMTH 245 (283)
Q Consensus 232 gs~~ITISnn~f~~ 245 (283)
|.-..-+++|.|..
T Consensus 360 G~a~avf~~C~i~~ 373 (520)
T PLN02201 360 GDATAVFQNCQILA 373 (520)
T ss_pred cCceEEEEccEEEE
Confidence 66677777777763
No 48
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=94.11 E-value=3.2 Score=42.81 Aligned_cols=115 Identities=18% Similarity=0.304 Sum_probs=69.4
Q ss_pred hHHHhhhc---CC----CeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-Ee------CC------CeEEEEeec
Q 023390 110 TLRYAVIQ---DE----PLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GG------PCITVQYVT 166 (283)
Q Consensus 110 tLr~av~~---~~----P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~------~G------~~i~i~~a~ 166 (283)
|+.+||.. .. -+++++=..|+. .+.|.| ..|+||.|.|..-+ |. +| +.+.+ .++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence 67777743 11 155665556654 466777 57999999987643 32 22 22334 689
Q ss_pred cEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCC-----------------Ccee
Q 023390 167 NIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------GLID 228 (283)
Q Consensus 167 NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~D-----------------gliD 228 (283)
+++.+||+|++... + ...-|+-+. .+...-+.+|+|....| |.+|
T Consensus 314 ~F~a~~it~~Ntag--~---------------~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVD 376 (538)
T PLN03043 314 RFVAVDVTFRNTAG--P---------------EKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVD 376 (538)
T ss_pred CEEEEeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccc
Confidence 99999999998531 1 112344333 35666677777765443 4445
Q ss_pred cccCCceEEEEcceec
Q 023390 229 AIHGSTAITISNNYMT 244 (283)
Q Consensus 229 v~~gs~~ITISnn~f~ 244 (283)
.+-|.-.+-+++|.|.
T Consensus 377 FIFG~a~avfq~c~i~ 392 (538)
T PLN03043 377 FIFGNAAAIFQNCNLY 392 (538)
T ss_pred eEeecceeeeeccEEE
Confidence 5556666667777665
No 49
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=94.09 E-value=0.94 Score=46.33 Aligned_cols=116 Identities=19% Similarity=0.306 Sum_probs=73.1
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-EeC------C------CeEEEEeeccEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAG------G------PCITVQYVTNII 169 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~~------G------~~i~i~~a~NVI 169 (283)
|+.+||.. +..+++++=..|+ ..+.|.| ++|+|+.|.|..-+ |.+ | +.+.+ .+++++
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v-~g~gF~ 287 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGV--YDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVAS-NGDGFI 287 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCe--eEEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEE-EcCCeE
Confidence 57777743 2234444444564 3466777 57999999987644 321 1 11223 579999
Q ss_pred EEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCC-----------------Cceeccc
Q 023390 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------GLIDAIH 231 (283)
Q Consensus 170 IrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~D-----------------gliDv~~ 231 (283)
.+||+|++... + ..+-|+-+. .+...-+.+|.|....| |.+|.+-
T Consensus 288 A~nitf~Ntag--~---------------~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIF 350 (509)
T PLN02488 288 GIDMCFRNTAG--P---------------AKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFIC 350 (509)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEe
Confidence 99999998431 1 123445544 46788888888876544 4556666
Q ss_pred CCceEEEEcceecc
Q 023390 232 GSTAITISNNYMTH 245 (283)
Q Consensus 232 gs~~ITISnn~f~~ 245 (283)
|.-.+-+++|.|..
T Consensus 351 G~a~avFq~C~I~s 364 (509)
T PLN02488 351 GNAAAVFQFCQIVA 364 (509)
T ss_pred cceEEEEEccEEEE
Confidence 67777788888863
No 50
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=93.97 E-value=1.3 Score=45.67 Aligned_cols=115 Identities=23% Similarity=0.339 Sum_probs=70.2
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-Ee------CC------CeEEEEeeccEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GG------PCITVQYVTNII 169 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~------~G------~~i~i~~a~NVI 169 (283)
|+.+||.. ...+++++=..|+.+ +.|.| ++|+||.|.|..-+ |. +| +.+.+ .+++++
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~a~~F~ 308 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGV-KGKGFI 308 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEE-ECCCEE
Confidence 56666642 222344443445443 56677 57889999987633 32 11 12333 689999
Q ss_pred EEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCC-----------------Cceeccc
Q 023390 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------GLIDAIH 231 (283)
Q Consensus 170 IrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~D-----------------gliDv~~ 231 (283)
.+||+|++... + ...-|+-+. .+..+-+.+|.|....| |.+|.+-
T Consensus 309 a~nitf~Ntag--~---------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~IeGtVDFIF 371 (530)
T PLN02933 309 AKDISFVNYAG--P---------------AKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDIYGTIDFIF 371 (530)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEEeEEEecccccccCCCceEEEeeEEecccceec
Confidence 99999998431 1 122344443 46888888888887655 4455566
Q ss_pred CCceEEEEcceec
Q 023390 232 GSTAITISNNYMT 244 (283)
Q Consensus 232 gs~~ITISnn~f~ 244 (283)
|.-..-+++|.|.
T Consensus 372 G~a~avFq~C~i~ 384 (530)
T PLN02933 372 GNAAVVFQNCSLY 384 (530)
T ss_pred cCceEEEeccEEE
Confidence 6666777788775
No 51
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=93.97 E-value=0.96 Score=46.89 Aligned_cols=115 Identities=17% Similarity=0.337 Sum_probs=65.5
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-EeC------C-------CeEEEEeeccE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAG------G-------PCITVQYVTNI 168 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~~------G-------~~i~i~~a~NV 168 (283)
|+.+||.. +..+++++=..|+. .+.+.| .+|+|+.|.|..-+ |.+ | +.+.+ .++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v-~~~~F 349 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVY--NEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAI-NGDHF 349 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcee--EEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEE-EcCCE
Confidence 67778743 22345555455643 366777 47899999987533 331 1 11223 68999
Q ss_pred EEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCC-----------------Cceecc
Q 023390 169 IIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------GLIDAI 230 (283)
Q Consensus 169 IIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~D-----------------gliDv~ 230 (283)
+.+||+|++... + ...-|+-+. .+...-+.+|.|....| |.+|.+
T Consensus 350 ~a~nitf~Ntag--~---------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFI 412 (572)
T PLN02990 350 TAKNIGFENTAG--P---------------EGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFI 412 (572)
T ss_pred EEEeeEEEeCCC--C---------------CCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceE
Confidence 999999998532 1 112233333 34556666666655433 344444
Q ss_pred cCCceEEEEcceec
Q 023390 231 HGSTAITISNNYMT 244 (283)
Q Consensus 231 ~gs~~ITISnn~f~ 244 (283)
-|.-..-+++|.|.
T Consensus 413 FG~a~avf~~C~i~ 426 (572)
T PLN02990 413 FGDAKVVLQNCNIV 426 (572)
T ss_pred ccCceEEEEccEEE
Confidence 45555556666664
No 52
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=93.90 E-value=0.73 Score=47.90 Aligned_cols=116 Identities=16% Similarity=0.266 Sum_probs=71.7
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-Ee------CC------CeEEEEeeccEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GG------PCITVQYVTNII 169 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~------~G------~~i~i~~a~NVI 169 (283)
|+.+||.. +..++|++=..|+ ..+.+.| ..|+||.|.|..-+ |. +| +.+.+ .+++++
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~Gv--Y~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v-~~~~F~ 365 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGV--YRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAA-VGERFL 365 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCce--eEEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEE-ECCCeE
Confidence 56777743 2335555555564 3466777 46899999987644 32 12 12223 579999
Q ss_pred EEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCC-----------------CCceecccC
Q 023390 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCN-----------------DGLIDAIHG 232 (283)
Q Consensus 170 IrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~-----------------DgliDv~~g 232 (283)
.+||+|++... +. ....-|+.+ ++...-+-+|+|.... .|.+|.+-|
T Consensus 366 a~~itf~Ntag--~~-------------~~QAvAlrv-~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG 429 (587)
T PLN02313 366 ARDITFQNTAG--PS-------------KHQAVALRV-GSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFG 429 (587)
T ss_pred EEeeEEEeCCC--CC-------------CCceEEEEe-cCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceecc
Confidence 99999998532 10 011233333 4677778888777643 455666667
Q ss_pred CceEEEEcceec
Q 023390 233 STAITISNNYMT 244 (283)
Q Consensus 233 s~~ITISnn~f~ 244 (283)
.-.+-+++|.|.
T Consensus 430 ~a~avfq~c~i~ 441 (587)
T PLN02313 430 NAAAVLQDCDIN 441 (587)
T ss_pred ceeEEEEccEEE
Confidence 777778888886
No 53
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=93.84 E-value=0.71 Score=43.92 Aligned_cols=113 Identities=17% Similarity=0.277 Sum_probs=60.7
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEec---CCcEEEeeCCceE-EeCC------------CeEEEEeeccEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIMN---SFKTIDGRGASVH-IAGG------------PCITVQYVTNII 169 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i~---snkTI~G~ga~~~-I~~G------------~~i~i~~a~NVI 169 (283)
|+.+||.. ...++++|=..|+-+ +.|.|. +++||.|.|..-+ |.+. +.+.+ .++|++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-ccccee
Confidence 57777753 334555555566444 677773 6999999987643 3321 22334 589999
Q ss_pred EEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCCCceecccCCceEEEEcceec
Q 023390 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMT 244 (283)
Q Consensus 170 IrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~DgliDv~~gs~~ITISnn~f~ 244 (283)
.+||+|++.. |. .....-|+.+ .+.++.+.+|.|....|=|+. . ....-+.+|++.
T Consensus 91 ~~nit~~Nt~--g~-------------~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~-~--~~r~y~~~c~Ie 146 (298)
T PF01095_consen 91 AENITFENTA--GP-------------SGGQAVALRV-SGDRAAFYNCRFLGYQDTLYA-N--GGRQYFKNCYIE 146 (298)
T ss_dssp EEEEEEEEHC--SG-------------SG----SEEE-T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEE
T ss_pred eeeeEEecCC--CC-------------cccceeeeee-cCCcEEEEEeEEccccceeee-c--cceeEEEeeEEE
Confidence 9999999843 11 0122356665 458899999999988776654 1 223344555544
No 54
>PLN02773 pectinesterase
Probab=93.72 E-value=2.1 Score=41.29 Aligned_cols=117 Identities=14% Similarity=0.232 Sum_probs=69.7
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-EeC----------------C------Ce
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IAG----------------G------PC 159 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~~----------------G------~~ 159 (283)
|+.+||.. +..++++|=..|+ ..+.|.| ++|+||.|++..-+ |.. | +.
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~--Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGV--YRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCce--EEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 57777743 2234444444564 3466777 46899999876533 220 1 12
Q ss_pred EEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCC----------------
Q 023390 160 ITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCN---------------- 223 (283)
Q Consensus 160 i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~---------------- 223 (283)
+.+ .++|++.+||+|++..+.+. ...-|+.+ .+..+-+.+|.|....
T Consensus 97 v~v-~a~~f~a~nlT~~Nt~~~~~---------------gQAvAl~v-~gDr~~f~~c~~~G~QDTL~~~~gr~yf~~c~ 159 (317)
T PLN02773 97 VIV-EGEDFIAENITFENSAPEGS---------------GQAVAIRV-TADRCAFYNCRFLGWQDTLYLHYGKQYLRDCY 159 (317)
T ss_pred EEE-ECCCeEEEeeEEEeCCCCCC---------------CcEEEEEe-cCccEEEEccEeecccceeEeCCCCEEEEeeE
Confidence 334 68999999999998543110 11233333 3567777777776544
Q ss_pred -CCceecccCCceEEEEcceecc
Q 023390 224 -DGLIDAIHGSTAITISNNYMTH 245 (283)
Q Consensus 224 -DgliDv~~gs~~ITISnn~f~~ 245 (283)
.|.+|.+-|.-..-+.+|.|..
T Consensus 160 IeG~VDFIFG~g~a~Fe~c~i~s 182 (317)
T PLN02773 160 IEGSVDFIFGNSTALLEHCHIHC 182 (317)
T ss_pred EeecccEEeeccEEEEEeeEEEE
Confidence 4555666666667777887753
No 55
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=93.59 E-value=1.3 Score=46.80 Aligned_cols=115 Identities=17% Similarity=0.269 Sum_probs=71.2
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceEE-e------CC------CeEEEEeeccEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GG------PCITVQYVTNII 169 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~I-~------~G------~~i~i~~a~NVI 169 (283)
|+.+||.. +..++|++=..|+ ..+.|.| ..|+|+.|.|...+| . +| +.+.+ .+++++
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v-~g~~F~ 340 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGI--YKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAI-VGDHFI 340 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCc--eEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEE-ECCCeE
Confidence 67778753 2334555444564 3466777 368899999876543 2 12 11233 689999
Q ss_pred EEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCC-----------------Cceeccc
Q 023390 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------GLIDAIH 231 (283)
Q Consensus 170 IrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~D-----------------gliDv~~ 231 (283)
.+||+|++... + ...-|+-+. .+...-+.+|.|....| |.+|.+-
T Consensus 341 a~nitf~Ntag--~---------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 403 (670)
T PLN02217 341 AKNIGFENTAG--A---------------IKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLF 403 (670)
T ss_pred EEeeEEEeCCC--C---------------CCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEe
Confidence 99999998532 1 122344443 46777788888776544 4456666
Q ss_pred CCceEEEEcceec
Q 023390 232 GSTAITISNNYMT 244 (283)
Q Consensus 232 gs~~ITISnn~f~ 244 (283)
|.-..-++||.|.
T Consensus 404 G~a~avfq~C~I~ 416 (670)
T PLN02217 404 GDAAAVFQNCTLL 416 (670)
T ss_pred cCceEEEEccEEE
Confidence 6666777777775
No 56
>PLN02314 pectinesterase
Probab=93.41 E-value=1.2 Score=46.25 Aligned_cols=115 Identities=21% Similarity=0.349 Sum_probs=72.9
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceEE-eC------C------CeEEEEeeccEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-AG------G------PCITVQYVTNII 169 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~I-~~------G------~~i~i~~a~NVI 169 (283)
|+.+||.. +..++|++=..|+. .+.+.| ..|+|+.|.|..-+| .+ | +.+.+ .+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v-~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTY--VENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAA-AGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceE--EEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEE-EcCCeE
Confidence 67778743 33455555556653 356667 468999999876433 21 2 11223 689999
Q ss_pred EEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCC-----------------Cceeccc
Q 023390 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------GLIDAIH 231 (283)
Q Consensus 170 IrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~D-----------------gliDv~~ 231 (283)
.+||+|++... + ...-|+-+. ++...-+.+|.|....| |.+|.+-
T Consensus 369 a~~itf~Ntag--~---------------~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIF 431 (586)
T PLN02314 369 AKDMGFINTAG--A---------------AKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIF 431 (586)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceec
Confidence 99999998531 1 122344443 46778888888877544 4456666
Q ss_pred CCceEEEEcceec
Q 023390 232 GSTAITISNNYMT 244 (283)
Q Consensus 232 gs~~ITISnn~f~ 244 (283)
|.-.+-+++|.|.
T Consensus 432 G~a~avf~~c~i~ 444 (586)
T PLN02314 432 GNAAVVFQNCNIQ 444 (586)
T ss_pred cCceeeeeccEEE
Confidence 6777777888775
No 57
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=93.40 E-value=0.37 Score=49.56 Aligned_cols=144 Identities=14% Similarity=0.195 Sum_probs=85.7
Q ss_pred CCCeEEEEeeeeEEEeCc------e---EE-e-cCCcEEEeeCCce-EEeCCCeEEEEeeccEEEEeeEEEecccCCCce
Q 023390 118 DEPLWIIFARDMVITLKE------E---LI-M-NSFKTIDGRGASV-HIAGGPCITVQYVTNIIIHGINIHDCKRGGNAN 185 (283)
Q Consensus 118 ~~P~~IvF~~~g~I~L~~------~---L~-i-~snkTI~G~ga~~-~I~~G~~i~i~~a~NVIIrnL~i~~~~~~g~~~ 185 (283)
..|+.+.|...-.+.+.. + +. + -+|.||.+..-+. +..+--||.+..++||.|.+.+|.. +.+..
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt---gDD~I 312 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT---GDDCI 312 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec---CCceE
Confidence 578899888765555531 1 11 1 2455555542221 0112236888899999999999983 11111
Q ss_pred eecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCCCceecc---cCCceEEEEcceecccCeEEEeecCCCcCCC
Q 023390 186 VRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLIDAI---HGSTAITISNNYMTHHNKVMLLGHSDTFTQD 261 (283)
Q Consensus 186 ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~DgliDv~---~gs~~ITISnn~f~~H~k~~LiG~sd~~~~D 261 (283)
..- .| ...|+-... -+++|||-||-|+.++-+++.-. .+-.+|++.+|.|.+-+.+.-|...+.-. -
T Consensus 313 ~ik----sg----~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G 383 (542)
T COG5434 313 AIK----SG----AGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-G 383 (542)
T ss_pred Eee----cc----cCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-e
Confidence 000 00 111111111 26889999999999888877632 35689999999999988888777665422 1
Q ss_pred CceeEEEEceEE
Q 023390 262 KNMQVTIAFNHF 273 (283)
Q Consensus 262 ~~~~VTih~N~F 273 (283)
...+|+|..|--
T Consensus 384 ~v~nI~~~~~~~ 395 (542)
T COG5434 384 GVRNIVFEDNKM 395 (542)
T ss_pred eEEEEEEecccc
Confidence 234565555544
No 58
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=93.40 E-value=1.7 Score=45.31 Aligned_cols=115 Identities=21% Similarity=0.335 Sum_probs=72.1
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCc-eEEe---cCCcEEEeeCCceE-EeCCC------------eEEEEeeccE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKE-ELIM---NSFKTIDGRGASVH-IAGGP------------CITVQYVTNI 168 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~-~L~i---~snkTI~G~ga~~~-I~~G~------------~i~i~~a~NV 168 (283)
|+.+||.. +..++|++=..|+.+ + .|.| .+|+||.|.|..-+ |.++. .+.+ .++++
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v-~~~~F 362 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYE--ENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAA-TGAGF 362 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEE--EEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEE-EcCCE
Confidence 57777743 233555555556543 3 3777 47899999987644 43221 1223 68999
Q ss_pred EEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCC-----------------Cceecc
Q 023390 169 IIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------GLIDAI 230 (283)
Q Consensus 169 IIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~D-----------------gliDv~ 230 (283)
+.+||+|++..+ + ...-|+-+. .+.+.-+.+|.|....| |.+|.+
T Consensus 363 ~a~~itf~Ntag--~---------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFI 425 (587)
T PLN02484 363 IARDMTFENWAG--P---------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFI 425 (587)
T ss_pred EEEeeEEEECCC--C---------------CCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEecccee
Confidence 999999998532 1 112333333 46777788888776544 445666
Q ss_pred cCCceEEEEcceec
Q 023390 231 HGSTAITISNNYMT 244 (283)
Q Consensus 231 ~gs~~ITISnn~f~ 244 (283)
-|.-..-+++|.|.
T Consensus 426 FG~a~avfq~C~i~ 439 (587)
T PLN02484 426 FGNAAVVLQNCSIY 439 (587)
T ss_pred cccceeEEeccEEE
Confidence 67777777888776
No 59
>PLN02497 probable pectinesterase
Probab=93.25 E-value=2.3 Score=41.27 Aligned_cols=122 Identities=18% Similarity=0.281 Sum_probs=72.3
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-Ee--C------CCeEEEEeeccEEEEee
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA--G------GPCITVQYVTNIIIHGI 173 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~--~------G~~i~i~~a~NVIIrnL 173 (283)
|+.+||.. +..+++++=..|+ ..+.|.| ++++||.|+|...+ |. + -+.+.+ .+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~--Y~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGL--YREKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcE--EEEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 56666642 2334444444553 3466777 58999999987532 32 1 123444 6899999999
Q ss_pred EEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCCCce-----------------ecccCCce
Q 023390 174 NIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLI-----------------DAIHGSTA 235 (283)
Q Consensus 174 ~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~Dgli-----------------Dv~~gs~~ 235 (283)
+|++..+... .+. .....-|+.+. .+.++-+.+|.|....|=|+ |.+-|.-.
T Consensus 123 T~~Nt~~~~~---------~~~-~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG~VDFIFG~g~ 192 (331)
T PLN02497 123 TFANSYNFPS---------KGN-KNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSDGRHYFKRCTIQGAVDFIFGSGQ 192 (331)
T ss_pred EEEeCCCCcc---------ccC-CCCCcceEEEEecCCcEEEEeeEEeccccceeeCCCcEEEEeCEEEecccEEccCce
Confidence 9998542100 000 00122344443 46888899999988766654 44455555
Q ss_pred EEEEcceec
Q 023390 236 ITISNNYMT 244 (283)
Q Consensus 236 ITISnn~f~ 244 (283)
.-+.+|.|.
T Consensus 193 a~Fe~C~I~ 201 (331)
T PLN02497 193 SIYESCVIQ 201 (331)
T ss_pred EEEEccEEE
Confidence 666777765
No 60
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=93.17 E-value=1.3 Score=45.76 Aligned_cols=115 Identities=19% Similarity=0.309 Sum_probs=68.1
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceEE-e------CC------CeEEEEeeccEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVHI-A------GG------PCITVQYVTNII 169 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~I-~------~G------~~i~i~~a~NVI 169 (283)
|..+||.. +..++|+|=..|+. .+.+.| ..|+||.|.|..-+| . +| +.+.+ .+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY--~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v-~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVY--FENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV-FGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCce--EEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE-ECCCeE
Confidence 56667743 22344444445654 366777 468899999876433 2 12 12223 579999
Q ss_pred EEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCC-----------------Cceeccc
Q 023390 170 IHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------GLIDAIH 231 (283)
Q Consensus 170 IrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~D-----------------gliDv~~ 231 (283)
.+||+|++... + ...-|+-+. .+...-+.+|.|....| |.+|.+-
T Consensus 349 a~~itf~Ntag--~---------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIF 411 (565)
T PLN02468 349 ARDMGFRNTAG--P---------------IKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIF 411 (565)
T ss_pred EEEEEEEeCCC--C---------------CCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecccceee
Confidence 99999998532 1 112333332 45677777777766443 4455556
Q ss_pred CCceEEEEcceec
Q 023390 232 GSTAITISNNYMT 244 (283)
Q Consensus 232 gs~~ITISnn~f~ 244 (283)
|.-.+-++||.|.
T Consensus 412 G~a~avfq~c~i~ 424 (565)
T PLN02468 412 GNSAVVFQNCNIL 424 (565)
T ss_pred ccceEEEeccEEE
Confidence 6666667777664
No 61
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=92.94 E-value=2.1 Score=44.32 Aligned_cols=115 Identities=21% Similarity=0.343 Sum_probs=70.1
Q ss_pred hHHHhhhc-------CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCCceE-Ee------CC------CeEEEEeec
Q 023390 110 TLRYAVIQ-------DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGASVH-IA------GG------PCITVQYVT 166 (283)
Q Consensus 110 tLr~av~~-------~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~~~-I~------~G------~~i~i~~a~ 166 (283)
|..+||.. ...+++++=..|+. .+.|.| ++|+||.|.|..-+ |. +| +.+.+ .++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVY--EEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEE--EEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECC
Confidence 56667743 11244554455654 366777 57889999987543 32 12 22334 689
Q ss_pred cEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCC-----------------Ccee
Q 023390 167 NIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCND-----------------GLID 228 (283)
Q Consensus 167 NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~D-----------------gliD 228 (283)
+++.+||+|++... + ...-|+.+. ++...-+.+|.|....| |.+|
T Consensus 341 ~F~a~nitf~Ntag--~---------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVD 403 (566)
T PLN02713 341 NFVAVNITFRNTAG--P---------------AKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVD 403 (566)
T ss_pred CeEEEeeEEEeCCC--C---------------CCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccc
Confidence 99999999998532 1 112333333 45667777777776544 4456
Q ss_pred cccCCceEEEEcceec
Q 023390 229 AIHGSTAITISNNYMT 244 (283)
Q Consensus 229 v~~gs~~ITISnn~f~ 244 (283)
.+-|.-.+-+++|.|.
T Consensus 404 FIFG~a~avfq~C~i~ 419 (566)
T PLN02713 404 FIFGNAAVVFQNCNLY 419 (566)
T ss_pred eecccceEEEeccEEE
Confidence 6666777777777775
No 62
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=92.85 E-value=0.072 Score=38.91 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=16.0
Q ss_pred CCCCChhhHHHHhhhhhh
Q 023390 22 SPVQDPELVVEEVHKSIN 39 (283)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~ 39 (283)
...|||++|+++||+.|+
T Consensus 23 aY~pdP~~Vt~~FN~~V~ 40 (56)
T PF04431_consen 23 AYVPDPENVTNEFNRHVH 40 (56)
T ss_pred hcCCCHHHHHHHHHHHHH
Confidence 458999999999998885
No 63
>PLN02671 pectinesterase
Probab=92.84 E-value=2.7 Score=41.23 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=61.1
Q ss_pred hHHHhhhc----CCCeEEEEeeeeEEEeCceEEe---cCCcEEEeeCC---ceEEeC----------C--------CeEE
Q 023390 110 TLRYAVIQ----DEPLWIIFARDMVITLKEELIM---NSFKTIDGRGA---SVHIAG----------G--------PCIT 161 (283)
Q Consensus 110 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga---~~~I~~----------G--------~~i~ 161 (283)
|+.+||.. +..+++++=..|+ ..+.|.| ++|+||.|.|. +..|.. | +.+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~Gv--Y~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGI--YREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCce--EEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 56667642 2223444444554 4467777 57899999874 333431 1 1123
Q ss_pred EEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCCCcee
Q 023390 162 VQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLID 228 (283)
Q Consensus 162 i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~DgliD 228 (283)
+ .+++++.+||+|++..+.++ |. .....-|+.+. +.++-+.+|.|....|=|++
T Consensus 151 v-~a~~F~a~nitfeNt~~~~~----------g~-~~~QAVALrv~-gDra~f~~c~f~G~QDTLy~ 204 (359)
T PLN02671 151 I-ESDYFCATGITFENTVVAEP----------GG-QGMQAVALRIS-GDKAFFYKVRVLGAQDTLLD 204 (359)
T ss_pred E-ECCceEEEeeEEEcCCCCCC----------CC-CCccEEEEEEc-CccEEEEcceEeccccccEe
Confidence 3 68999999999998532111 10 00123445553 68899999999887666653
No 64
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=91.99 E-value=4.5 Score=40.61 Aligned_cols=51 Identities=10% Similarity=0.223 Sum_probs=29.9
Q ss_pred eeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEee-CCceEEEeeeeeecCCCCce
Q 023390 164 YVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIF-GGSHVWVDHCSLSNCNDGLI 227 (283)
Q Consensus 164 ~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~-gs~nVWIDHcs~s~~~Dgli 227 (283)
.+++++.+||+|++....+. .....-|+-+. .+..+-+.+|.|....|=|+
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~-------------~~~~~QAVALrv~GDra~fy~C~flG~QDTLy 255 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSV-------------DAGNHPAVALRTDGDKVQIENVNILGRQDTFF 255 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCC-------------CCCcceeEEEEEcCCcEEEEeeEEecccceee
Confidence 68999999999998643110 00112233332 35677777777765555444
No 65
>smart00656 Amb_all Amb_all domain.
Probab=91.96 E-value=6.5 Score=34.82 Aligned_cols=95 Identities=20% Similarity=0.303 Sum_probs=55.0
Q ss_pred eEEecCCcEEEeeCCceEEeCCCeEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCe-EEee-CCceEE
Q 023390 136 ELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDG-VSIF-GGSHVW 213 (283)
Q Consensus 136 ~L~i~snkTI~G~ga~~~I~~G~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~Da-I~I~-gs~nVW 213 (283)
.++| .|++|.+..... ..++-+|.+.+++||.|.+.+|...... +. .....|+ +.+. ++.+|=
T Consensus 41 NVIi-rnl~i~~~~~~~-~~~~D~i~~~~~~~VwIDHct~s~~~~~------------~~-~~~~~D~~~di~~~s~~vT 105 (190)
T smart00656 41 NVII-RNLTIHDPKPVY-GSDGDAISIDGSSNVWIDHVSLSGCTVT------------GF-GDDTYDGLIDIKNGSTYVT 105 (190)
T ss_pred eEEE-eCCEEECCccCC-CCCCCEEEEeCCCeEEEEccEeEcceec------------cC-CCCCCCccEEECcccccEE
Confidence 3444 478887753321 1234578888999999999999963211 11 1122344 3443 466666
Q ss_pred EeeeeeecCCCCceecccC------CceEEEEcceecc
Q 023390 214 VDHCSLSNCNDGLIDAIHG------STAITISNNYMTH 245 (283)
Q Consensus 214 IDHcs~s~~~DgliDv~~g------s~~ITISnn~f~~ 245 (283)
|-.|.|....-+.+--... .-.||+.+|+|.+
T Consensus 106 vs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~ 143 (190)
T smart00656 106 ISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGN 143 (190)
T ss_pred EECceEecCCEEEEEccCCCccccccceEEEECcEEcC
Confidence 6666665543333321111 1279999999985
No 66
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=89.41 E-value=1.4 Score=43.12 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=69.4
Q ss_pred eEEecCCcEEEeeCCceEEeCCCeEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEe
Q 023390 136 ELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVD 215 (283)
Q Consensus 136 ~L~i~snkTI~G~ga~~~I~~G~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWID 215 (283)
-|.+..+.|-++.-.+--+....||.+.++..+.|..-+|.+... + +-..-++||++.+++.+-|-
T Consensus 99 gI~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~-----~---------r~~~rGnGI~vyNa~~a~V~ 164 (408)
T COG3420 99 GIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLAD-----L---------RVAERGNGIYVYNAPGALVV 164 (408)
T ss_pred eEEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccc-----c---------chhhccCceEEEcCCCcEEE
Confidence 344455555444322222344578899999999999999986432 1 22356899999999999999
Q ss_pred eeeeecCCCCceecccCCceEEEEcceeccc
Q 023390 216 HCSLSNCNDGLIDAIHGSTAITISNNYMTHH 246 (283)
Q Consensus 216 Hcs~s~~~DgliDv~~gs~~ITISnn~f~~H 246 (283)
-+.++...||+.. +-|+.-+|+.|.|++-
T Consensus 165 ~ndisy~rDgIy~--~~S~~~~~~gnr~~~~ 193 (408)
T COG3420 165 GNDISYGRDGIYS--DTSQHNVFKGNRFRDL 193 (408)
T ss_pred cCccccccceEEE--cccccceecccchhhe
Confidence 9999999999975 4577788888888753
No 67
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=85.23 E-value=11 Score=33.56 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=52.9
Q ss_pred CCCeEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCe-EEee-CCceEEEeeeeeecCCCCcee-----
Q 023390 156 GGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDG-VSIF-GGSHVWVDHCSLSNCNDGLID----- 228 (283)
Q Consensus 156 ~G~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~Da-I~I~-gs~nVWIDHcs~s~~~DgliD----- 228 (283)
++-.|.+.+++||+|.+.+|....... .....|+ +.+. ++++|=|-+|-|.......+.
T Consensus 74 ~~Dai~i~~~~nVWIDH~sfs~~~~~~--------------~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~ 139 (200)
T PF00544_consen 74 DGDAISIDNSSNVWIDHCSFSWGNFEC--------------NSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDS 139 (200)
T ss_dssp S--SEEEESTEEEEEES-EEEETTS-G--------------GGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTT
T ss_pred CCCeEEEEecccEEEeccEEecccccc--------------ccccCCceEEEEeCCceEEEEchhccccccccccCCCCC
Confidence 345688999999999999999752110 0011333 5554 577777777777764322211
Q ss_pred -cccCCceEEEEcceecccCe-EEEeecCCCcCCCCceeEEEEceEEc
Q 023390 229 -AIHGSTAITISNNYMTHHNK-VMLLGHSDTFTQDKNMQVTIAFNHFG 274 (283)
Q Consensus 229 -v~~gs~~ITISnn~f~~H~k-~~LiG~sd~~~~D~~~~VTih~N~F~ 274 (283)
.......||+-+|+|.+... .=++. .-++-+-+|+|.
T Consensus 140 ~~~~~~~~vT~hhN~f~~~~~R~P~~r---------~G~~Hv~NN~~~ 178 (200)
T PF00544_consen 140 NSTDRGLRVTFHHNYFANTNSRNPRVR---------FGYVHVYNNYYY 178 (200)
T ss_dssp CGGGTTEEEEEES-EEEEEEE-TTEEC---------SCEEEEES-EEE
T ss_pred ccccCCceEEEEeEEECchhhCCCccc---------ccEEEEEEeeeE
Confidence 12223799999999985432 11221 125677777663
No 68
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=84.59 E-value=7.1 Score=37.84 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=53.8
Q ss_pred CCCeEEeeCCceEEEeeeeeecCC-----CCceecccCCceEEEEcceecccCeEEEeecCCCcC--CCCceeEEEEceE
Q 023390 200 DGDGVSIFGGSHVWVDHCSLSNCN-----DGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT--QDKNMQVTIAFNH 272 (283)
Q Consensus 200 ~~DaI~I~gs~nVWIDHcs~s~~~-----DgliDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~--~D~~~~VTih~N~ 272 (283)
-+-++.|..+.||+|-..+|.... +-.|.+..++.+|=|-+|-|..|....---+.|... ....--||+.+|+
T Consensus 115 ~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~ 194 (345)
T COG3866 115 VGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNK 194 (345)
T ss_pred EeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeee
Confidence 456888999999999999999876 234456678899999999999765531111112110 1113579999999
Q ss_pred EcCCC
Q 023390 273 FGEGL 277 (283)
Q Consensus 273 F~~~~ 277 (283)
|.++-
T Consensus 195 fhdh~ 199 (345)
T COG3866 195 FHDHD 199 (345)
T ss_pred eecCC
Confidence 97653
No 69
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=80.40 E-value=21 Score=35.27 Aligned_cols=41 Identities=20% Similarity=0.491 Sum_probs=26.2
Q ss_pred ceEEecCCcEEEeeCCceEEe---CCCeEEEEeeccEEEEeeEEEe
Q 023390 135 EELIMNSFKTIDGRGASVHIA---GGPCITVQYVTNIIIHGINIHD 177 (283)
Q Consensus 135 ~~L~i~snkTI~G~ga~~~I~---~G~~i~i~~a~NVIIrnL~i~~ 177 (283)
..++|+.-+|+-|.-.. .+. .|..+++ .+.++||++|++|+
T Consensus 45 g~~vInr~l~l~ge~ga-~l~g~g~G~~vtv-~aP~~~v~Gl~vr~ 88 (408)
T COG3420 45 GNFVINRALTLRGENGA-VLDGGGKGSYVTV-AAPDVIVEGLTVRG 88 (408)
T ss_pred ccEEEccceeecccccc-EEecCCcccEEEE-eCCCceeeeEEEec
Confidence 45666655666565222 222 1345666 69999999999995
No 70
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=76.74 E-value=23 Score=32.54 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=39.0
Q ss_pred CCCCCeEEeeCCc-eEEEeeeeeecCCCCceecccCCceEEEEcceecccCe
Q 023390 198 ISDGDGVSIFGGS-HVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNK 248 (283)
Q Consensus 198 ~~~~DaI~I~gs~-nVWIDHcs~s~~~DgliDv~~gs~~ITISnn~f~~H~k 248 (283)
.-..||+++.+.. .+.|.-..+..+.|..|- ..+.-.++|++-+..++.|
T Consensus 93 dVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q-~Ng~Gtv~I~nF~a~d~GK 143 (215)
T PF03211_consen 93 DVCEDAATFKGDGGTVTIIGGGARNASDKVFQ-HNGGGTVTIKNFYAEDFGK 143 (215)
T ss_dssp S-SSESEEEESSEEEEEEESTEEEEEEEEEEE-E-SSEEEEEEEEEEEEEEE
T ss_pred ccceeeeEEcCCCceEEEeCCcccCCCccEEE-ecCceeEEEEeEEEcCCCE
Confidence 3567999999887 999999999999999988 4566779999854444443
No 71
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=76.14 E-value=3.9 Score=35.18 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=26.5
Q ss_pred CCceEEEeeeeeecCCCCceecccCCceEEEEcceecccCeE
Q 023390 208 GGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKV 249 (283)
Q Consensus 208 gs~nVWIDHcs~s~~~DgliDv~~gs~~ITISnn~f~~H~k~ 249 (283)
+..++.|.+|.|......-+.+..++ .++|++|.|.+-..+
T Consensus 183 ~~~~~~i~n~~~~~~~~~gi~i~~~~-~~~i~n~~i~~~~~g 223 (225)
T PF12708_consen 183 GNNNITISNNTFEGNCGNGINIEGGS-NIIISNNTIENCDDG 223 (225)
T ss_dssp EEEEEEEECEEEESSSSESEEEEECS-EEEEEEEEEESSSEE
T ss_pred ecceEEEEeEEECCccceeEEEECCe-EEEEEeEEEECCccC
Confidence 34688888888887443344544444 488888888765543
No 72
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=69.61 E-value=7.2 Score=25.90 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=22.2
Q ss_pred eEEeeCCceEEEeeeeeecCCCCceecccCCceEEEEcceec
Q 023390 203 GVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMT 244 (283)
Q Consensus 203 aI~I~gs~nVWIDHcs~s~~~DgliDv~~gs~~ITISnn~f~ 244 (283)
||.+..+++..|..+.++...||..- ..+.+-+|..|.|.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~--~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYL--TDSSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEE--EeCCCCEeECCEEE
Confidence 45555555555666666666664422 34455555555554
No 73
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=65.14 E-value=58 Score=29.53 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=46.8
Q ss_pred CCceEEEeeeeeecC-CCCcee-----cccCCceEEEEcceecccCeEEEe--ecCCCcC-CCCceeEEEEceEEcCCCC
Q 023390 208 GGSHVWVDHCSLSNC-NDGLID-----AIHGSTAITISNNYMTHHNKVMLL--GHSDTFT-QDKNMQVTIAFNHFGEGLV 278 (283)
Q Consensus 208 gs~nVWIDHcs~s~~-~DgliD-----v~~gs~~ITISnn~f~~H~k~~Li--G~sd~~~-~D~~~~VTih~N~F~~~~~ 278 (283)
.+++|+|.|+.|..+ ....++ +..|-.+..|-||.|..-..+.+. -.....+ .......++.+|.+. ++.
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~-NT~ 110 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIV-NTR 110 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEe-eee
Confidence 367999999999986 233333 234566889999999964433322 1121122 234678889999995 777
Q ss_pred CC
Q 023390 279 QR 280 (283)
Q Consensus 279 ~R 280 (283)
+|
T Consensus 111 ~r 112 (198)
T PF08480_consen 111 KR 112 (198)
T ss_pred ec
Confidence 66
No 74
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=59.44 E-value=17 Score=35.38 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=40.0
Q ss_pred EEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecCCCCcee
Q 023390 162 VQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLID 228 (283)
Q Consensus 162 i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~~DgliD 228 (283)
+.+.++.||||+.-+++-|..+ ....-|.--+.|+|+.|..||..++.++.--|+.
T Consensus 264 vengkhfvirnvkaknitpdfs-----------kkagidnatvaiygcdnfvidni~mvnsagmlig 319 (464)
T PRK10123 264 VENGKHFVIRNIKAKNITPDFS-----------KKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIG 319 (464)
T ss_pred ecCCcEEEEEeeeccccCCCch-----------hhcCCCcceEEEEcccceEEeccccccccccEEE
Confidence 4466788888888887765321 1122466678899999999999999987655544
No 75
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=57.72 E-value=53 Score=30.66 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=53.3
Q ss_pred cCCcEEEeeCCceE-EeCCCeEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeC------CceE
Q 023390 140 NSFKTIDGRGASVH-IAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFG------GSHV 212 (283)
Q Consensus 140 ~snkTI~G~ga~~~-I~~G~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~g------s~nV 212 (283)
.++.+|.|..--.. ...|.+|.|..+ +..|+|-+|.++. .+||.+.+ ..++
T Consensus 96 ~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~~ 153 (246)
T PF07602_consen 96 ANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGINGN 153 (246)
T ss_pred cCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccce
Confidence 66777777532111 224568889654 9999999999742 24454443 2345
Q ss_pred EEeeeeeecCCCCceec-ccCCceEEEEcceecccCeEEE
Q 023390 213 WVDHCSLSNCNDGLIDA-IHGSTAITISNNYMTHHNKVML 251 (283)
Q Consensus 213 WIDHcs~s~~~DgliDv-~~gs~~ITISnn~f~~H~k~~L 251 (283)
.|.-+++....-|..-. ....-.-+|.||+|++-..++.
T Consensus 154 vI~GN~~~~~~~Gi~i~~~~~~~~n~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 154 VISGNSIYFNKTGISISDNAAPVENKIENNIIENNNIGIV 193 (246)
T ss_pred EeecceEEecCcCeEEEcccCCccceeeccEEEeCCcCeE
Confidence 56666777666665221 1112224789999997665554
No 76
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=50.90 E-value=38 Score=22.30 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=31.4
Q ss_pred eEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEeeCCceEEEeeeeeecC
Q 023390 159 CITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC 222 (283)
Q Consensus 159 ~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I~gs~nVWIDHcs~s~~ 222 (283)
||.+..+++..|++=+|.+ ..|||.+..+++--|..+.++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~----------------------~~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN----------------------NSYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeC----------------------CCCEEEEEeCCCCEeECCEEEcC
Confidence 3667777777777777764 34699999998888888887653
No 77
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=50.53 E-value=2 Score=30.53 Aligned_cols=19 Identities=47% Similarity=1.006 Sum_probs=13.0
Q ss_pred CcceeecCccccccccccc
Q 023390 56 IDDCWRCDPKWEENRQQLA 74 (283)
Q Consensus 56 id~cwr~~~~w~~~r~~la 74 (283)
-|+|.||+..|+-.|-.-|
T Consensus 20 yd~ci~cqgkwagkrgkca 38 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCA 38 (55)
T ss_dssp HHHH--TTGGGTT-HHHHH
T ss_pred hhHHheecceeccccCcch
Confidence 5899999999998875544
No 78
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=48.25 E-value=2.8e+02 Score=27.75 Aligned_cols=87 Identities=18% Similarity=0.287 Sum_probs=46.9
Q ss_pred EEEEeeccEEEEeeEEEecccCCCceeecCCCccccCc---CCCCCeEEeeCCceEEEeeeeeecCCCCceecccCCceE
Q 023390 160 ITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRT---ISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAI 236 (283)
Q Consensus 160 i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~---~~~~DaI~I~gs~nVWIDHcs~s~~~DgliDv~~gs~~I 236 (283)
+-+....+++||+-.|.+.. |. -++...+ ...|+ ..-.-||.-.+...+=|.+|.|..|.=|.+. ....
T Consensus 139 ~~f~~~t~~~~hgC~F~gf~--g~-cl~~~~~-~~VrGC~F~~C~~gi~~~~~~~lsVk~C~FekC~igi~s----~G~~ 210 (386)
T PF01696_consen 139 VVFHANTNTLFHGCSFFGFH--GT-CLESWAG-GEVRGCTFYGCWKGIVSRGKSKLSVKKCVFEKCVIGIVS----EGPA 210 (386)
T ss_pred eEEEecceEEEEeeEEecCc--ce-eEEEcCC-cEEeeeEEEEEEEEeecCCcceEEeeheeeeheEEEEEe----cCCe
Confidence 34556788888888888642 11 1110000 00000 0012233333456777788888888777643 3567
Q ss_pred EEEcceecccCeEEEeec
Q 023390 237 TISNNYMTHHNKVMLLGH 254 (283)
Q Consensus 237 TISnn~f~~H~k~~LiG~ 254 (283)
+|++|-+.+-.-..|++.
T Consensus 211 ~i~hn~~~ec~Cf~l~~g 228 (386)
T PF01696_consen 211 RIRHNCASECGCFVLMKG 228 (386)
T ss_pred EEecceecccceEEEEcc
Confidence 778888886655555543
No 79
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=47.02 E-value=44 Score=31.84 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=5.6
Q ss_pred CceEEEeeeee
Q 023390 209 GSHVWVDHCSL 219 (283)
Q Consensus 209 s~nVWIDHcs~ 219 (283)
++||-|.|+.|
T Consensus 155 ~kNvei~ns~l 165 (277)
T PF12541_consen 155 CKNVEIHNSKL 165 (277)
T ss_pred eeeEEEEccEE
Confidence 45555555544
No 80
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=36.55 E-value=23 Score=26.11 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=17.8
Q ss_pred HHHhhccccccCCCCCChhhHHHH
Q 023390 10 LLCLLAPTFISSSPVQDPELVVEE 33 (283)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~ 33 (283)
++.+..|.|+.+-+.|||..|+-.
T Consensus 10 ilafa~pvfassmq~p~pasvttt 33 (65)
T PF10880_consen 10 ILAFASPVFASSMQMPDPASVTTT 33 (65)
T ss_pred HHHHhhhHhhhcccCCCCcceeHH
Confidence 344567777778889999998754
No 81
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=27.85 E-value=3.9e+02 Score=27.14 Aligned_cols=79 Identities=23% Similarity=0.317 Sum_probs=37.6
Q ss_pred CCCCeEEeeC------CceEEEeeeeeecCC--CCceecccCCceEEEEcceecccCeE--------------EEeecCC
Q 023390 199 SDGDGVSIFG------GSHVWVDHCSLSNCN--DGLIDAIHGSTAITISNNYMTHHNKV--------------MLLGHSD 256 (283)
Q Consensus 199 ~~~DaI~I~g------s~nVWIDHcs~s~~~--DgliDv~~gs~~ITISnn~f~~H~k~--------------~LiG~sd 256 (283)
.++.+|.|-. .++.-|.|+-|..|. -|+|++ .|..-||++|.|.+..-. .+||...
T Consensus 182 NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISv--KS~~N~ir~Ntf~es~G~ltlRHGn~n~V~gN~FiGng~ 259 (425)
T PF14592_consen 182 NGGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISV--KSSDNTIRNNTFRESQGSLTLRHGNRNTVEGNVFIGNGV 259 (425)
T ss_dssp S---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEE--ESBT-EEES-EEES-SSEEEEEE-SS-EEES-EEEE-SS
T ss_pred CCceeEEEecccccccccceeeecchhhhcCCceeEEEe--ecCCceEeccEEEeccceEEEecCCCceEeccEEecCCC
Confidence 3456666632 467888888888775 344554 477788999999864433 2444432
Q ss_pred CcCCCCceeE-----EEEceEEcCCCCCCC
Q 023390 257 TFTQDKNMQV-----TIAFNHFGEGLVQRM 281 (283)
Q Consensus 257 ~~~~D~~~~V-----Tih~N~F~~~~~~R~ 281 (283)
+. ..+.+|| ++.+|||. ++..+.
T Consensus 260 ~~-~tGGIRIi~~~H~I~nNY~~-gl~g~~ 287 (425)
T PF14592_consen 260 KE-GTGGIRIIGEGHTIYNNYFE-GLTGTR 287 (425)
T ss_dssp SS--B--EEE-SBS-EEES-EEE-ESSB-T
T ss_pred cC-CCCceEEecCCcEEEcceee-ccccce
Confidence 21 0123444 79999995 776553
No 82
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=24.20 E-value=2.5e+02 Score=28.90 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=16.0
Q ss_pred eEEEEeeccEEEEeeEEEecc
Q 023390 159 CITVQYVTNIIIHGINIHDCK 179 (283)
Q Consensus 159 ~i~i~~a~NVIIrnL~i~~~~ 179 (283)
.+.+ .+++++.+||+|++..
T Consensus 264 T~~v-~~~~F~a~nitf~Nta 283 (497)
T PLN02698 264 TFTI-TGDGFIARDIGFKNAA 283 (497)
T ss_pred eEEE-ECCCeEEEeeEEEECC
Confidence 4445 6899999999999853
No 83
>COG1424 BioW Pimeloyl-CoA synthetase [Coenzyme metabolism]
Probab=22.11 E-value=1.6e+02 Score=27.11 Aligned_cols=67 Identities=25% Similarity=0.501 Sum_probs=44.1
Q ss_pred cccCCCCC---CcceeecCccccccccccccCcccccCC----ccCC-CCCeEEEEcCCCCCCCCCCCchhHHHhhhc--
Q 023390 48 LSCGTGNP---IDDCWRCDPKWEENRQQLADCAIGFGKQ----AIGG-KDGKIYVVTDSGDDDPVNPKPGTLRYAVIQ-- 117 (283)
Q Consensus 48 ~~c~~~n~---id~cwr~~~~w~~~r~~la~~a~GfG~~----ttGG-~gG~v~~VT~~~d~d~~~~~pGtLr~av~~-- 117 (283)
.+|..--| -.-||.=||++-..- .|..-.||=+- -.|- .||+|+.|.+..| |-+.+..
T Consensus 161 askv~~hp~VvaELC~SDd~dY~TGY--vagkkiGY~Rit~lKe~gt~~GgRVfFVd~~~d----------ln~yI~~Le 228 (239)
T COG1424 161 ASKVNAHPGVVAELCWSDDPDYTTGY--VAGKKIGYHRITDLKEVGTRYGGRVFFVDDCID----------LNHYISFLE 228 (239)
T ss_pred HHhhccCcceeEEEeecCCCcceeee--eecceeeeEEeecccccCCccCcEEEEEcCccc----------HHHHHHHHh
Confidence 35664444 345999888887532 34455788762 2444 5899999999888 6665542
Q ss_pred CCCeEEEEe
Q 023390 118 DEPLWIIFA 126 (283)
Q Consensus 118 ~~P~~IvF~ 126 (283)
+.|..|...
T Consensus 229 ~kp~lIe~e 237 (239)
T COG1424 229 SKPKLIEYE 237 (239)
T ss_pred cCCEEEEEe
Confidence 567777664
No 84
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=21.22 E-value=86 Score=24.61 Aligned_cols=27 Identities=30% Similarity=0.494 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCCCCCCCchhHHHhhhcCCCeEEEE
Q 023390 89 DGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIF 125 (283)
Q Consensus 89 gG~v~~VT~~~d~d~~~~~pGtLr~av~~~~P~~IvF 125 (283)
.|..++||+.+| ||.|+...+++-+..
T Consensus 52 dGDlVTIts~~d----------L~~A~~~~~~~~l~~ 78 (81)
T cd06401 52 DGDLITIFDSSD----------LSFAIQCSRILKLTL 78 (81)
T ss_pred CCCEEEeccHHH----------HHHHHhcCcceEEEE
Confidence 588999999888 999998888776643
No 85
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=21.17 E-value=1.1e+02 Score=16.64 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=6.7
Q ss_pred eEEEeeeeeecCCC
Q 023390 211 HVWVDHCSLSNCND 224 (283)
Q Consensus 211 nVWIDHcs~s~~~D 224 (283)
+++|.+|.|+....
T Consensus 3 ~~~i~~n~i~~~~~ 16 (26)
T smart00710 3 NVTIENNTIRNNGG 16 (26)
T ss_pred CEEEECCEEEeCCC
Confidence 44555555554443
No 86
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=21.13 E-value=1e+02 Score=29.43 Aligned_cols=14 Identities=7% Similarity=0.266 Sum_probs=9.1
Q ss_pred CCceEEEeeeeeec
Q 023390 208 GGSHVWVDHCSLSN 221 (283)
Q Consensus 208 gs~nVWIDHcs~s~ 221 (283)
.++||-+++|.|.|
T Consensus 37 es~nI~~~~~~F~~ 50 (277)
T PF12541_consen 37 ESRNIELKNCIFKW 50 (277)
T ss_pred cccceEEECCEEee
Confidence 36666666666665
No 87
>PRK13663 hypothetical protein; Provisional
Probab=20.13 E-value=90 Score=31.80 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=25.5
Q ss_pred CcccccCCccCCCCCeEEEEcCCCCCCCCCCCchhHHHhhhc
Q 023390 76 CAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQ 117 (283)
Q Consensus 76 ~a~GfG~~ttGG~gG~v~~VT~~~d~d~~~~~pGtLr~av~~ 117 (283)
.-+|||++-.==.--.+|+||-+. |+.|-|..+++|
T Consensus 154 SdeGyGkN~yIeTtrpLVVVTAPG------PGSGKlATCLSQ 189 (493)
T PRK13663 154 SDEGYGKNDYIETTRPLVVVTAPG------PGSGKLATCLSQ 189 (493)
T ss_pred CcCCCCCCCceeccCCeEEEeCCC------CCccHHHHHHHH
Confidence 569999964333345788888664 677778888887
Done!