Query 023391
Match_columns 283
No_of_seqs 265 out of 1560
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 05:59:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwa_A Receptor tyrosine-prote 34.2 47 0.0016 21.2 3.5 14 270-283 29-42 (44)
2 3arc_J Photosystem II reaction 26.8 79 0.0027 19.7 3.5 23 42-66 6-28 (40)
3 4ezc_A UREA transporter 1; mem 24.0 1.8E+02 0.0061 27.0 7.1 69 87-160 35-105 (384)
4 4dve_A Biotin transporter BIOY 20.1 2.9E+02 0.0099 23.0 7.1 26 122-147 45-72 (198)
5 4ev6_A Magnesium transport pro 19.8 1.2E+02 0.0043 26.9 5.1 56 221-279 280-336 (339)
6 3p5n_A RIBU, riboflavin uptake 18.3 73 0.0025 26.1 2.9 28 129-156 50-77 (189)
7 2hfr_A Fowlicidin-3, cathelici 17.6 44 0.0015 18.6 0.9 17 199-215 2-18 (27)
8 2ks1_B Epidermal growth factor 16.6 1.7E+02 0.0059 18.4 3.7 20 263-282 21-41 (44)
9 2lbg_A Major prion protein; co 15.1 1.5E+02 0.0051 16.8 2.7 18 147-164 8-25 (27)
10 2l2t_A Receptor tyrosine-prote 14.1 2.1E+02 0.007 18.1 3.5 9 274-282 32-40 (44)
No 1
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=34.16 E-value=47 Score=21.20 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=8.0
Q ss_pred HHHHHHHHhhhhcC
Q 023391 270 IILPTLLKRKRIYE 283 (283)
Q Consensus 270 ~llp~~~~r~~~~~ 283 (283)
..+..++|||+++|
T Consensus 29 l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 29 VVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHCSCC
T ss_pred HHHHhheehhhhhc
Confidence 34455667776653
No 2
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=26.80 E-value=79 Score=19.65 Aligned_cols=23 Identities=39% Similarity=0.865 Sum_probs=15.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHH
Q 023391 42 ERFPLTHWEFAAFVGVFLLFVTGLF 66 (283)
Q Consensus 42 ~~~~l~~w~~~~~~~~~~~~~~~L~ 66 (283)
+|-|+ |.+....++.++.+++++
T Consensus 6 GRiPL--Wlvgtv~G~~vi~~~giF 28 (40)
T 3arc_J 6 GRIPL--WIVATVAGMGVIVIVGLF 28 (40)
T ss_dssp TSSCH--HHHHHHHHHHHHHHHHHH
T ss_pred CcccE--EeeeeehhhhhhheeeEE
Confidence 36777 887777777766555543
No 3
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=24.04 E-value=1.8e+02 Score=26.99 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=35.4
Q ss_pred HhHHHHHHHHHHhHhhCCchHHHHHHHhhhhhceeec--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 023391 87 ADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMI--PGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFL 160 (283)
Q Consensus 87 ~~l~~l~~~l~~~~~~~~~~~~l~f~~l~i~~~~~~i--Pg~~~L~l~aG~lfG~~~G~~l~~ig~~lGa~i~y~l 160 (283)
.|+++..+|+++ ++...-.+=.++--+.|+++. |.+-+ .++.|..++-++-.+.+.+|+.+|...++++
T Consensus 35 g~~~~~~~~~~~----~~~~~~~i~~~LrG~gQV~f~~n~lsGl-liLigl~i~sp~~al~allG~~vstltA~ll 105 (384)
T 4ezc_A 35 GDMKEFANWLKD----KPQALQFVDWVLRGISQVVFVSNPISGI-LILVGLLVQNPWCALNGCVGTVVSTLTALLL 105 (384)
T ss_dssp TTCHHHHHHHHT----SCHHHHHHHHHHHHHHGGGTCCCHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHhc----CCcHHHHHHHHhcCceEEEecCCcHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 477888888764 332111111112224566655 44443 4567777766555555555555555444433
No 4
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=20.08 E-value=2.9e+02 Score=22.99 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=17.8
Q ss_pred ecChH--HHHHHHHHHHHHHHHHHHHHH
Q 023391 122 MIPGT--IFMSLLAGALFGVIRGLILVV 147 (283)
Q Consensus 122 ~iPg~--~~L~l~aG~lfG~~~G~~l~~ 147 (283)
++|.+ .+-.+++|.++|+..|++-..
T Consensus 45 pVPiTlQtl~V~LaG~~LG~r~G~lsv~ 72 (198)
T 4dve_A 45 PVPIILQNMGIMMAGGLLGPKYGTISVG 72 (198)
T ss_dssp SCCBCSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCccHHHHHHHHHHHHHChhHHHHHHH
Confidence 35544 344789999999998865433
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=19.77 E-value=1.2e+02 Score=26.91 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=29.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH-HHhh
Q 023391 221 HIFFLATLIGLIPASYITVRAGLALGDLQSVKDLYDFKTLLVLFLIGSVIILPTL-LKRK 279 (283)
Q Consensus 221 ~~F~lat~iG~~P~~~i~~~~G~~l~~~~s~~~~~s~~~~~~l~~l~~~~llp~~-~~r~ 279 (283)
+.+.+.|.+ .+|.+++....|-....+...+.-+.+ ..++++.+++++++.+ +|||
T Consensus 280 k~LTiit~I-flP~T~IaGiyGMNf~~mPel~~~~gy--~~~l~~m~~~~~~~~~~fkrk 336 (339)
T 4ev6_A 280 KILTMVTTI-FAVPMWITGIYGMNFSYLPLANNPQGF--WLVMALMVVIIMIFVYIFRRS 336 (339)
T ss_dssp HHHHHHHHH-SSHHHHHHHHTTCCCSCCTTSSCTTHH--HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-HHHHHHHHhhccCcCCCCCCccCchHH--HHHHHHHHHHHHHHHHHHHHc
Confidence 344445544 457788888888777665433332233 2333444444444444 4554
No 6
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=18.32 E-value=73 Score=26.15 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 023391 129 MSLLAGALFGVIRGLILVVFNATAGASS 156 (283)
Q Consensus 129 L~l~aG~lfG~~~G~~l~~ig~~lGa~i 156 (283)
..+++|++|||+.|.+...+...++...
T Consensus 50 ~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 50 PSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3567888888888887777777666554
No 7
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=17.63 E-value=44 Score=18.63 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=12.4
Q ss_pred hhccccchhHHHHhhhc
Q 023391 199 RITPSLPNLFINLASPI 215 (283)
Q Consensus 199 Rl~P~~P~~lin~~aG~ 215 (283)
|+.|.+|-.+...++|+
T Consensus 2 RF~P~vpvaintvaagi 18 (27)
T 2hfr_A 2 RFWPLVPVAINTVAAGI 18 (27)
T ss_dssp CSCSSSSSHHHHHHHHH
T ss_pred CccccCcceEEEeehhh
Confidence 67888887666666665
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=16.58 E-value=1.7e+02 Score=18.45 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH-HHHHhhhhc
Q 023391 263 LFLIGSVIILP-TLLKRKRIY 282 (283)
Q Consensus 263 l~~l~~~~llp-~~~~r~~~~ 282 (283)
+++++++.++- .++|||+++
T Consensus 21 v~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHhhhhHhh
Confidence 44433443333 445655544
No 9
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=15.06 E-value=1.5e+02 Score=16.79 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=12.8
Q ss_pred HHHHHHhHHHHHHHHHHh
Q 023391 147 VFNATAGASSCFFLSKLI 164 (283)
Q Consensus 147 ~ig~~lGa~i~y~lgR~l 164 (283)
..|+++|+.-+|++++..
T Consensus 8 AAGaVvGglGgy~lg~~m 25 (27)
T 2lbg_A 8 AAGAVVGGLGGYMLGSAM 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHh
Confidence 456777888888877654
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=14.06 E-value=2.1e+02 Score=18.13 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=4.7
Q ss_pred HHHHhhhhc
Q 023391 274 TLLKRKRIY 282 (283)
Q Consensus 274 ~~~~r~~~~ 282 (283)
.++|||++.
T Consensus 32 ~~~RRRr~~ 40 (44)
T 2l2t_A 32 VYVRRKSIK 40 (44)
T ss_dssp HHHHTTCSS
T ss_pred HHhhhhhhh
Confidence 445655544
Done!