Query 023391
Match_columns 283
No_of_seqs 265 out of 1560
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 05:59:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023391.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023391hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 23.9 5.4 0.00039 25.6 -0.8 10 211-220 21-30 (64)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 23.4 49 0.0035 18.3 3.4 19 49-67 5-23 (34)
3 d1q90m_ f.23.25.1 (M:) PetM su 10.4 1.4E+02 0.0099 16.1 4.2 24 139-162 4-28 (34)
4 d3cx5d2 f.23.11.1 (D:261-307) 5.4 2.6E+02 0.019 16.3 3.0 18 263-280 14-31 (47)
5 d1v54d_ f.23.1.1 (D:) Mitochon 5.2 3.5E+02 0.025 19.5 4.3 27 43-69 69-95 (144)
6 d1bl0a1 a.4.1.8 (A:9-62) MarA 4.8 3.2E+02 0.023 15.3 3.5 48 177-224 5-52 (54)
7 d1o82a_ a.64.2.1 (A:) Bacterio 4.1 4.5E+02 0.032 16.0 4.2 14 163-176 45-58 (70)
8 d1pw4a_ f.38.1.1 (A:) Glycerol 4.1 7.2E+02 0.053 18.9 6.1 14 151-164 299-312 (447)
9 d1q90g_ f.23.26.1 (G:) PetG su 4.0 3.2E+02 0.023 14.2 3.6 15 223-237 5-19 (30)
10 d2pila_ d.24.1.1 (A:) Pilin Gc 4.0 3E+02 0.022 18.2 3.0 15 49-63 4-18 (158)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=23.86 E-value=5.4 Score=25.62 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=3.1
Q ss_pred HhhhccCCCh
Q 023391 211 LASPIVDIPF 220 (283)
Q Consensus 211 ~~aG~~~i~~ 220 (283)
+++|+-+|++
T Consensus 21 ~i~gifGMN~ 30 (64)
T d2iuba2 21 FIAGIYGMNF 30 (64)
T ss_dssp HHTTSCC---
T ss_pred HHHhhhccCC
Confidence 3444444443
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.40 E-value=49 Score=18.32 Aligned_cols=19 Identities=32% Similarity=0.744 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023391 49 WEFAAFVGVFLLFVTGLFC 67 (283)
Q Consensus 49 w~~~~~~~~~~~~~~~L~~ 67 (283)
|.+....++.++.+++++.
T Consensus 5 Wlv~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 5 WIVATVAGMGVIVIVGLFF 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred EEeeehhhhhhHhheeeee
Confidence 8777777777766666543
No 3
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.44 E-value=1.4e+02 Score=16.09 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHH-HHhHHHHHHHHH
Q 023391 139 VIRGLILVVFNA-TAGASSCFFLSK 162 (283)
Q Consensus 139 ~~~G~~l~~ig~-~lGa~i~y~lgR 162 (283)
+..|..+.++|. .+|-.++|.+-|
T Consensus 4 fiagta~tmig~tl~glaigfvllr 28 (34)
T d1q90m_ 4 FIAGTALTMVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhHHHHHHHHHHHHHHHhhee
Confidence 445556666664 345556666555
No 4
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.42 E-value=2.6e+02 Score=16.33 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 023391 263 LFLIGSVIILPTLLKRKR 280 (283)
Q Consensus 263 l~~l~~~~llp~~~~r~~ 280 (283)
+++++.+..+..++||.+
T Consensus 14 ~~i~s~l~~~~~y~KR~k 31 (47)
T d3cx5d2 14 VIILSSLYLLSIWVKKFK 31 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 445555666667777653
No 5
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.24 E-value=3.5e+02 Score=19.53 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=19.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHH
Q 023391 43 RFPLTHWEFAAFVGVFLLFVTGLFCIY 69 (283)
Q Consensus 43 ~~~l~~w~~~~~~~~~~~~~~~L~~~~ 69 (283)
+.|-+-|+.++..+.+.+.+.+++.+|
T Consensus 69 ~~p~gewK~v~g~~~~~i~~s~~i~~~ 95 (144)
T d1v54d_ 69 NRSTNEWKTVVGAAMFFIGFTALLLIW 95 (144)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 578889998888777766666555555
No 6
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=4.77 E-value=3.2e+02 Score=15.31 Aligned_cols=48 Identities=6% Similarity=-0.089 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhccchHhHHHHhhhccccchhHHHHhhhccCCChHHHH
Q 023391 177 LRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFF 224 (283)
Q Consensus 177 ~~~~~~~l~k~~~~~~~~vll~Rl~P~~P~~lin~~aG~~~i~~~~F~ 224 (283)
++++.++++++-+..+..==+++.+-+-|..+.-..--.+++++..|+
T Consensus 5 i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~tp~~Yl 52 (54)
T d1bl0a1 5 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYI 52 (54)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHh
Confidence 455555666543222333345666666677777777777777777765
No 7
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=4.06 E-value=4.5e+02 Score=15.99 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=8.3
Q ss_pred HhcHHHHhhhhhHH
Q 023391 163 LIGRPLVSWFWPEK 176 (283)
Q Consensus 163 ~lg~~~v~~~~~~~ 176 (283)
.-|++.++.+.+++
T Consensus 45 aag~e~i~~~lkk~ 58 (70)
T d1o82a_ 45 AAGRESIKAYLKKE 58 (70)
T ss_dssp HTTTSCHHHHHHHH
T ss_pred HhcHHHHHHHHHHH
Confidence 35677776665543
No 8
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.05 E-value=7.2e+02 Score=18.86 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=5.3
Q ss_pred HHhHHHHHHHHHHh
Q 023391 151 TAGASSCFFLSKLI 164 (283)
Q Consensus 151 ~lGa~i~y~lgR~l 164 (283)
.+|..++-++.++.
T Consensus 299 ~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 299 IPGTLLCGWMSDKV 312 (447)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhc
Confidence 33333333333333
No 9
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.01 E-value=3.2e+02 Score=14.23 Aligned_cols=15 Identities=20% Similarity=0.631 Sum_probs=10.0
Q ss_pred HHHHHHHhHHHHHHH
Q 023391 223 FFLATLIGLIPASYI 237 (283)
Q Consensus 223 F~lat~iG~~P~~~i 237 (283)
.+.+..+|.+|.++.
T Consensus 5 ll~GivlGlipiTl~ 19 (30)
T d1q90g_ 5 LLCGIVLGLVPVTIA 19 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHhhHHHHHH
Confidence 455667777777654
No 10
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=3.96 E-value=3e+02 Score=18.24 Aligned_cols=15 Identities=7% Similarity=0.231 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHH
Q 023391 49 WEFAAFVGVFLLFVT 63 (283)
Q Consensus 49 w~~~~~~~~~~~~~~ 63 (283)
.+++++++++.++..
T Consensus 4 IELlVViaIIgILaa 18 (158)
T d2pila_ 4 IELMIVIAIVGILAA 18 (158)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 667777776665544
Done!