BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023392
(283 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Spinacia oleracea PE=1 SV=2
Length = 472
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 209 LADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLA 268
LADQ A A +DR G A + L + GC DP + YDP A
Sbjct: 410 LADQYMSSAALGDA----NKDAIDRGTFFGKAAQQ----VSLPVAQGCTDPEAKNYDPTA 461
Query: 269 NVDDGSC 275
DDGSC
Sbjct: 462 RSDDGSC 468
>sp|Q2KJC3|MPEG1_BOVIN Macrophage-expressed gene 1 protein OS=Bos taurus GN=MPEG1 PE=2
SV=2
Length = 717
Score = 35.0 bits (79), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 250 LNLVPGCMDPSSPLYDPLANVDDGSC 275
+N PGC D SSP ++ AN DDGSC
Sbjct: 344 VNTYPGCTDLSSPNFNFQANTDDGSC 369
>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Larrea tridentata GN=RCA1 PE=1 SV=1
Length = 476
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 212 QLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVD 271
QL+ E A+ + + R G AA+ ++ + GC DP + YDP A D
Sbjct: 411 QLADKYMSEAALGDANNDAIKRGTFYGGQAAQ--QVGNVPVPEGCTDPQATNYDPTARSD 468
Query: 272 DGSC 275
DGSC
Sbjct: 469 DGSC 472
>sp|Q0AJI9|THIC_NITEC Phosphomethylpyrimidine synthase OS=Nitrosomonas eutropha (strain
C91) GN=thiC PE=3 SV=1
Length = 632
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 22/196 (11%)
Query: 2 AATAGSIFAASSQFASATRSVSCRNATPSVSSTLGSSFKGASLPRSSPKQKKTVRITGKV 61
A +I A+ A + RN +++ +G+S G+S+ K +R G
Sbjct: 205 VARGRAIIPANINHPEAEPMIIGRNFLVKINANIGNSALGSSIQDEVEKMTWAIRWGGDT 264
Query: 62 TAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLL 121
++T N +E E R S +G P+Y L + G+ ++ + + L+
Sbjct: 265 VMDLSTGKNIHETREWIIRNS--PVPIGTVPIY----QALEKVDGKAEELTWEIFRDTLI 318
Query: 122 PNEDFGIGF---NGGFNQPFMCGGEPRAMLRKNRG-----------QNDSPFYTI--QIC 165
+ G+ + + G PF+ R +RG +S YT IC
Sbjct: 319 EQAEQGVDYFTIHAGVRLPFVPMTAKRMTGIVSRGGSIMAKWCLAHHKESFLYTHFEDIC 378
Query: 166 VPKHAINLIFSFTNGV 181
A ++ FS +G+
Sbjct: 379 EIMKAYDVSFSLGDGL 394
>sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Arabidopsis thaliana GN=RCA PE=1 SV=2
Length = 474
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 238 GNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSC 275
G +G + +L + GC DP + +DP A DDG+C
Sbjct: 433 GTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTC 470
>sp|Q2M385|MPEG1_HUMAN Macrophage-expressed gene 1 protein OS=Homo sapiens GN=MPEG1 PE=2
SV=1
Length = 716
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 250 LNLVPGCMDPSSPLYDPLANVDDGSC 275
N PGC D +SP ++ AN DDGSC
Sbjct: 344 FNTYPGCTDLNSPNFNFQANTDDGSC 369
>sp|Q5RBP9|MPEG1_PONAB Macrophage-expressed gene 1 protein OS=Pongo abelii GN=MPEG1 PE=2
SV=1
Length = 716
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 250 LNLVPGCMDPSSPLYDPLANVDDGSC 275
N PGC D +SP ++ AN DDGSC
Sbjct: 344 FNTYPGCTDLNSPNFNFQANTDDGSC 369
>sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1
Length = 464
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 238 GNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSC 275
G+ +G + L + GC D ++ YDP A DDGSC
Sbjct: 423 GSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSC 460
>sp|P23671|AMY_CLOAB Alpha-amylase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM
792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=amyA PE=3
SV=2
Length = 760
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 104 MSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQ 163
+SG I+YN N G NG N + AM++ + G F+
Sbjct: 583 VSGNNFTIYYNGNLANS-SNVSLHWGVNGWSNMQNL------AMVKDSNG-----FWEAT 630
Query: 164 ICVPKHAINLIFSFTNGVEWD 184
I +P + L F FTNG WD
Sbjct: 631 IAIPASSNTLNFCFTNGSSWD 651
>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2
Length = 466
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 238 GNLAAEGGDRC-DLNLVPGCMDPSSPLYDPLANVDDGSC 275
G+ +G + +L + GC DP + +DP A DDGSC
Sbjct: 424 GSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSC 462
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,860,840
Number of Sequences: 539616
Number of extensions: 5163699
Number of successful extensions: 9601
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 9568
Number of HSP's gapped (non-prelim): 40
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)