Query 023394
Match_columns 283
No_of_seqs 130 out of 378
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 03:42:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06203 CCT: CCT motif; Inte 99.8 4.4E-20 9.6E-25 131.3 3.2 45 185-229 1-45 (45)
2 KOG1601 GATA-4/5/6 transcripti 96.3 0.0014 3.1E-08 54.1 1.0 42 181-222 289-330 (340)
3 PF09425 CCT_2: Divergent CCT 95.6 0.0074 1.6E-07 39.6 1.6 25 183-208 2-26 (27)
4 smart00521 CBF CCAAT-Binding t 46.6 28 0.00061 27.0 3.4 25 202-226 36-61 (62)
5 PF05924 SAMP: SAMP Motif; In 33.0 33 0.00072 21.4 1.6 15 261-275 1-15 (20)
6 PF02045 CBFB_NFYA: CCAAT-bind 27.4 44 0.00096 25.6 1.8 23 202-224 35-58 (58)
7 KOG4571 Activating transcripti 26.1 49 0.0011 32.3 2.3 20 179-198 229-248 (294)
8 KOG1561 CCAAT-binding factor, 25.4 85 0.0018 30.6 3.7 31 204-234 218-249 (307)
9 PF12345 DUF3641: Protein of u 24.0 38 0.00082 29.7 1.0 17 35-52 118-134 (134)
10 PF15060 PPDFL: Differentiatio 23.7 68 0.0015 27.4 2.4 19 25-47 7-25 (110)
11 PF11472 DUF3206: Protein of u 23.6 30 0.00064 29.9 0.3 13 259-271 46-58 (128)
No 1
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=99.79 E-value=4.4e-20 Score=131.27 Aligned_cols=45 Identities=47% Similarity=0.938 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhhcCCCCccccchhhhhhhhcCccCceeecCCc
Q 023394 185 RKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRGRFARNNE 229 (283)
Q Consensus 185 R~~~l~RYreKRk~R~f~KkIRY~~RK~~Ad~RpRVKGRFvk~~e 229 (283)
|+++|+||++||++|+|+|+|+|+|||.+||.|||||||||+.+|
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e 45 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE 45 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence 689999999999999999999999999999999999999999874
No 2
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=96.33 E-value=0.0014 Score=54.15 Aligned_cols=42 Identities=38% Similarity=0.670 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCccccchhhhhhhhcCccCc
Q 023394 181 SVEERKDRILRYLKKKNQRNFNKTIKYACRKTLADRRVRVRG 222 (283)
Q Consensus 181 s~~eR~~~l~RYreKRk~R~f~KkIRY~~RK~~Ad~RpRVKG 222 (283)
....|...+.||++|++.|.|.++++|..|+..|+.|+|+||
T Consensus 289 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (340)
T KOG1601|consen 289 SSHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG 330 (340)
T ss_pred ccchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence 477999999999999999999999999999999999999999
No 3
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=95.57 E-value=0.0074 Score=39.64 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhhcCCCCccccc
Q 023394 183 EERKDRILRYLKKKNQRNFNKTIKYA 208 (283)
Q Consensus 183 ~eR~~~l~RYreKRk~R~f~KkIRY~ 208 (283)
..|++.|+||.||||.|... +.-|.
T Consensus 2 ~aRK~SLqRFLeKRK~R~~~-~~PY~ 26 (27)
T PF09425_consen 2 IARKASLQRFLEKRKDRLAA-KSPYQ 26 (27)
T ss_dssp ----HHHHHHHHHH------------
T ss_pred chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence 47999999999999999987 44443
No 4
>smart00521 CBF CCAAT-Binding transcription Factor.
Probab=46.57 E-value=28 Score=27.05 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=22.1
Q ss_pred CCccccchhhhhhhhcCc-cCceeec
Q 023394 202 NKTIKYACRKTLADRRVR-VRGRFAR 226 (283)
Q Consensus 202 ~KkIRY~~RK~~Ad~RpR-VKGRFvk 226 (283)
.|..-+++|-..|-+|+| --|||.+
T Consensus 36 rkpYlhESRH~HAm~R~Rg~gGRFl~ 61 (62)
T smart00521 36 RKPYLHESRHLHAMRRPRGSGGRFLN 61 (62)
T ss_pred cCCcccchhHHHHHccCcCCCCCCCC
Confidence 566789999999999999 7799976
No 5
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=33.05 E-value=33 Score=21.43 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=10.9
Q ss_pred ccHHHHHHHHHhccc
Q 023394 261 QDEEWLQEAMASLMY 275 (283)
Q Consensus 261 ~~e~~~~ea~asl~~ 275 (283)
+||+.|+|-|.|-|+
T Consensus 1 d~deiL~~CI~sAmP 15 (20)
T PF05924_consen 1 DEDEILQECIGSAMP 15 (20)
T ss_dssp --HHHHHHHHHCTS-
T ss_pred CHHHHHHHHHHHhcc
Confidence 356899999999875
No 6
>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.39 E-value=44 Score=25.64 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=18.9
Q ss_pred CCccccchhhhhhhhcCc-cCcee
Q 023394 202 NKTIKYACRKTLADRRVR-VRGRF 224 (283)
Q Consensus 202 ~KkIRY~~RK~~Ad~RpR-VKGRF 224 (283)
.|+.-+++|-..|-+|+| -.|||
T Consensus 35 rk~YlheSRH~HA~~R~Rg~gGRF 58 (58)
T PF02045_consen 35 RKPYLHESRHKHAMRRPRGPGGRF 58 (58)
T ss_pred hHHHHHHHHHHHHHcCccCCCCCC
Confidence 344578999999999999 67787
No 7
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=26.10 E-value=49 Score=32.29 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=14.7
Q ss_pred cCCHHHHHHHHHHHHHHhhh
Q 023394 179 RYSVEERKDRILRYLKKKNQ 198 (283)
Q Consensus 179 ~~s~~eR~~~l~RYreKRk~ 198 (283)
+-..+.|+.+-.|||+|||.
T Consensus 229 ~rkr~qnk~AAtRYRqKkRa 248 (294)
T KOG4571|consen 229 RRKRQQNKAAATRYRQKKRA 248 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 44566777778899998864
No 8
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=25.41 E-value=85 Score=30.61 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=25.9
Q ss_pred ccccchhhhhhhhcCc-cCceeecCCcccchh
Q 023394 204 TIKYACRKTLADRRVR-VRGRFARNNELCEED 234 (283)
Q Consensus 204 kIRY~~RK~~Ad~RpR-VKGRFvk~~e~~e~~ 234 (283)
+---++|-..|-+|+| --|||....+..++.
T Consensus 218 pYLHESRH~HAmkR~RG~GGRFln~k~~~~~s 249 (307)
T KOG1561|consen 218 PYLHESRHLHAMKRARGEGGRFLNTKEYHDDS 249 (307)
T ss_pred ccccchhhHHHhhcccCCCCCCCchhhhhhhc
Confidence 3356889999999999 999999999866554
No 9
>PF12345 DUF3641: Protein of unknown function (DUF3641) ; InterPro: IPR024521 This domain is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. It is found in association with an N-terminal radical_SAM domain (Pfam:PF04055 from PFAM).
Probab=24.00 E-value=38 Score=29.67 Aligned_cols=17 Identities=47% Similarity=0.866 Sum_probs=14.1
Q ss_pred CccccccCCCCcccCCCC
Q 023394 35 STNYGECPGNSVSSCGGS 52 (283)
Q Consensus 35 ~~~y~~~~~~~~~~~~gs 52 (283)
+|=||=|-| +-|||||+
T Consensus 118 ~HCygCTAG-~GSSCgGa 134 (134)
T PF12345_consen 118 DHCYGCTAG-AGSSCGGA 134 (134)
T ss_pred CcCccccCC-CCCCCCCc
Confidence 999998855 56999985
No 10
>PF15060 PPDFL: Differentiation and proliferation regulator
Probab=23.69 E-value=68 Score=27.40 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=10.4
Q ss_pred hhhHhhhhcCCccccccCCCCcc
Q 023394 25 ISAAMAAAGESTNYGECPGNSVS 47 (283)
Q Consensus 25 i~~~~~~~~~~~~y~~~~~~~~~ 47 (283)
.++++| .+.|-|.--+|.|
T Consensus 7 sGsL~A----t~~YYRr~~~S~s 25 (110)
T PF15060_consen 7 SGSLVA----THDYYRRRLGSTS 25 (110)
T ss_pred ccceee----cchhhhhcccccc
Confidence 456666 5566666444433
No 11
>PF11472 DUF3206: Protein of unknown function (DUF3206); InterPro: IPR021571 This bacterial family of proteins has no known function. ; PDB: 2AU5_A.
Probab=23.57 E-value=30 Score=29.85 Aligned_cols=13 Identities=46% Similarity=1.020 Sum_probs=10.3
Q ss_pred ccccHHHHHHHHH
Q 023394 259 MKQDEEWLQEAMA 271 (283)
Q Consensus 259 ~k~~e~~~~ea~a 271 (283)
|++|.+|||||.+
T Consensus 46 ME~~P~WL~Es~~ 58 (128)
T PF11472_consen 46 MEKDPNWLQESVG 58 (128)
T ss_dssp HHH-TTHHHHHHH
T ss_pred HhhCchHHHHHHH
Confidence 6777889999976
Done!