Query 023394
Match_columns 283
No_of_seqs 130 out of 378
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 06:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogl_Q JAZ1 incomplete degron 94.9 0.013 4.3E-07 35.8 2.1 19 182-200 3-21 (21)
2 3ogk_Q JAZ1 incomplete degron 93.4 0.023 8E-07 34.9 1.0 19 185-203 1-19 (22)
3 4g92_A HAPB protein; transcrip 64.1 8.8 0.0003 28.8 4.3 28 202-229 36-64 (64)
4 3qc1_A Immunoglobulin-binding 27.6 31 0.0011 30.7 2.5 17 182-198 173-189 (243)
5 2v0p_A TAP42, type 2A phosphat 22.4 45 0.0015 29.1 2.5 17 182-198 160-176 (234)
6 2au5_A Conserved domain protei 22.4 21 0.0007 30.0 0.3 13 259-271 51-63 (139)
7 2v1o_A Cytosolic acyl coenzyme 20.0 70 0.0024 24.2 2.9 22 180-201 128-149 (151)
8 3v2c_Y Ribosome-associated inh 14.1 69 0.0023 25.3 1.5 19 187-205 83-101 (119)
9 1ci6_A Transcription factor AT 13.6 82 0.0028 22.5 1.7 15 186-200 11-25 (63)
10 3nct_A Protein PSIB; DNA bindi 12.0 59 0.002 27.7 0.6 17 135-151 50-69 (144)
No 1
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=94.95 E-value=0.013 Score=35.80 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhhcC.....
Q 023394 182 VEERKDRILRYLKKKNQRN..... 200 (283)
Q Consensus 182 ~~eR~~~l~RYreKRk~R~..... 200 (283)
+..|++.|+||.||||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 3579999999999999873
No 2
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=93.43 E-value=0.023 Score=34.93 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhhcCCCC
Q 023394 185 RKDRILRYLKKKNQRNFNK 203 (283)
Q Consensus 185 R~~~l~RYreKRk~R~f~K 203 (283)
|++.|+||.||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 6789999999999987654
No 3
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=64.15 E-value=8.8 Score=28.84 Aligned_cols=28 Identities=36% Similarity=0.405 Sum_probs=23.6
Q ss_pred CCccccchhhhhhhhcCc-cCceeecCCc
Q 023394 202 NKTIKYACRKTLADRRVR-VRGRFARNNE 229 (283)
Q Consensus 202 ~KkIRY~~RK~~Ad~RpR-VKGRFvk~~e 229 (283)
.|+.-+++|-..|-+|+| -.|||.+..+
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 455679999999999999 8899998753
No 4
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=27.57 E-value=31 Score=30.71 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 023394 182 VEERKDRILRYLKKKNQ 198 (283)
Q Consensus 182 ~~eR~~~l~RYreKRk~ 198 (283)
...|.+||.|||++|.-
T Consensus 173 a~rR~~KI~rfK~eKeL 189 (243)
T 3qc1_A 173 ASQRQAKIERYKQKKEV 189 (243)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35899999999999843
No 5
>2v0p_A TAP42, type 2A phosphatase-associated protein 42; phosphorylation, signal transduction inhibitor, hydrolase in; 1.80A {Saccharomyces cerevisiae}
Probab=22.41 E-value=45 Score=29.13 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q 023394 182 VEERKDRILRYLKKKNQ 198 (283)
Q Consensus 182 ~~eR~~~l~RYreKRk~ 198 (283)
...|.++|.|||++|.-
T Consensus 160 a~~R~~KI~rfK~eKel 176 (234)
T 2v0p_A 160 QLKRKEKIELFQRNKEI 176 (234)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34799999999999843
No 6
>2au5_A Conserved domain protein; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.10A {Enterococcus faecalis} SCOP: a.244.1.1
Probab=22.39 E-value=21 Score=29.96 Aligned_cols=13 Identities=46% Similarity=0.969 Sum_probs=11.1
Q ss_pred ccccHHHHHHHHH
Q 023394 259 MKQDEEWLQEAMA 271 (283)
Q Consensus 259 ~k~~e~~~~ea~a 271 (283)
|++|.+|||||.+
T Consensus 51 ME~~P~WL~Es~~ 63 (139)
T 2au5_A 51 MEKDPNWLEEAAG 63 (139)
T ss_dssp HHHCTTHHHHHHH
T ss_pred HhhCchHHHHHHH
Confidence 6777889999976
No 7
>2v1o_A Cytosolic acyl coenzyme A thioester hydrolase; acyl-COA thioesterase 7, serine esterase, protein structure, domain duplication, ACOT7, macrophage; HET: COA; 1.78A {Mus musculus}
Probab=19.99 E-value=70 Score=24.23 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHHhhhcCC
Q 023394 180 YSVEERKDRILRYLKKKNQRNF 201 (283)
Q Consensus 180 ~s~~eR~~~l~RYreKRk~R~f 201 (283)
-|.+|+++...||+.+|++|.-
T Consensus 128 ~t~~e~~~~~~r~~~~~~~~~~ 149 (151)
T 2v1o_A 128 LRQEQEEEGRKRYEAQKLERME 149 (151)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHhh
Confidence 4567777788899887777654
No 8
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB: 3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Probab=14.07 E-value=69 Score=25.29 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhhcCCCCcc
Q 023394 187 DRILRYLKKKNQRNFNKTI 205 (283)
Q Consensus 187 ~~l~RYreKRk~R~f~KkI 205 (283)
..|.||++|.+.|.=...+
T Consensus 83 rQLrK~K~K~~~~~~~~~~ 101 (119)
T 3v2c_Y 83 RQLNKLQHKGEARRAATSV 101 (119)
T ss_dssp HHHHHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHhhcCCccc
Confidence 4678899988766643333
No 9
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=13.63 E-value=82 Score=22.49 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhcC
Q 023394 186 KDRILRYLKKKNQRN 200 (283)
Q Consensus 186 ~~~l~RYreKRk~R~ 200 (283)
..+..|||+||+.+.
T Consensus 11 r~AA~R~R~KKk~~~ 25 (63)
T 1ci6_A 11 KTAATRYRQKKRAEQ 25 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356799999998775
No 10
>3nct_A Protein PSIB; DNA binding protein, chaperone; 2.20A {Escherichia coli}
Probab=12.03 E-value=59 Score=27.67 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=14.6
Q ss_pred cccCCcccccccc---CCcC
Q 023394 135 CEFGDDCCAFMHD---LKPM 151 (283)
Q Consensus 135 ~e~qd~~~G~~~~---~~p~ 151 (283)
+||+.|+|||.|. |.|.
T Consensus 50 aEy~~EFgGffPVq~RfsP~ 69 (144)
T 3nct_A 50 GEYGSEFGGFFPVQVRFTPA 69 (144)
T ss_dssp ECSSSTTCSCSSSEEEEEET
T ss_pred ccccccccceeeEEEEEcCC
Confidence 7999999999998 6664
Done!