Query 023394
Match_columns 283
No_of_seqs 130 out of 378
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 06:02:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023394.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023394hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2au5a1 a.244.1.1 (A:1-132) Hy 22.9 9.3 0.00068 29.8 0.3 13 259-271 48-60 (132)
2 d1imua_ d.204.1.1 (A:) Ribosom 14.9 38 0.0028 23.8 2.1 21 187-207 83-103 (107)
3 d1b3aa_ d.9.1.1 (A:) RANTES (r 14.3 41 0.003 22.5 2.0 24 250-273 31-64 (67)
4 d1eiga_ d.9.1.1 (A:) Eotaxin-2 13.4 44 0.0032 22.5 2.0 24 250-273 30-63 (73)
5 d1g2ta_ d.9.1.1 (A:) Eotaxin-3 12.7 53 0.0039 22.1 2.2 24 250-273 32-65 (71)
6 d1f2la_ d.9.1.1 (A:) Chemokine 11.7 36 0.0026 23.0 1.0 12 262-273 50-61 (64)
7 d2hcca_ d.9.1.1 (A:) Chemokine 10.1 50 0.0036 22.1 1.3 24 250-273 28-61 (66)
8 d1m8aa_ d.9.1.1 (A:) Macrophag 9.7 76 0.0055 20.5 2.2 25 249-273 25-59 (61)
9 d1t5la2 c.37.1.19 (A:415-595) 9.7 77 0.0056 24.3 2.5 24 176-199 61-84 (181)
10 d1nr4a_ d.9.1.1 (A:) Thymus an 9.7 75 0.0055 21.1 2.2 24 250-273 31-64 (67)
No 1
>d2au5a1 a.244.1.1 (A:1-132) Hypothetical protein EF2947 {Enterococcus faecalis [TaxId: 1351]}
Probab=22.88 E-value=9.3 Score=29.84 Aligned_cols=13 Identities=46% Similarity=0.969 Sum_probs=11.1
Q ss_pred ccccHHHHHHHHH
Q 023394 259 MKQDEEWLQEAMA 271 (283)
Q Consensus 259 ~k~~e~~~~ea~a 271 (283)
|++|.+|||||.+
T Consensus 48 ME~~P~WL~Es~~ 60 (132)
T d2au5a1 48 MEKDPNWLEEAAG 60 (132)
T ss_dssp HHHCTTHHHHHHH
T ss_pred HhhCchHHHHHHH
Confidence 6777889999976
No 2
>d1imua_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=14.90 E-value=38 Score=23.76 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhcCCCCcccc
Q 023394 187 DRILRYLKKKNQRNFNKTIKY 207 (283)
Q Consensus 187 ~~l~RYreKRk~R~f~KkIRY 207 (283)
..|.||++|.+.+.-..++++
T Consensus 83 rqLrk~k~K~~~~~~~~~~k~ 103 (107)
T d1imua_ 83 RQLNKLQHKSESRRADERLKD 103 (107)
T ss_dssp HHHHHHHHCCSCCSSCCCSCC
T ss_pred HHHHHHHHHHHHhcccchhhh
Confidence 457899999877766666654
No 3
>d1b3aa_ d.9.1.1 (A:) RANTES (regulated upon activation, normal T-cell expressed and secreted) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.29 E-value=41 Score=22.49 Aligned_cols=24 Identities=25% Similarity=0.619 Sum_probs=16.2
Q ss_pred CCCCCCcccc----------cccHHHHHHHHHhc
Q 023394 250 PYCVDDDVQM----------KQDEEWLQEAMASL 273 (283)
Q Consensus 250 ~~C~~d~~~~----------k~~e~~~~ea~asl 273 (283)
+.|...+|.+ .-++.|||++|..|
T Consensus 31 ~~C~~~aVIf~tk~g~~iC~dP~~~WVq~~i~~l 64 (67)
T d1b3aa_ 31 GKCSNPAVVFVTRKNRQVCANPEKKWVREYINSL 64 (67)
T ss_dssp TTSSSCCEEEEETTCCEEEECTTSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCEEeCCCChHHHHHHHHHH
Confidence 3566666652 23478999999765
No 4
>d1eiga_ d.9.1.1 (A:) Eotaxin-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.44 E-value=44 Score=22.50 Aligned_cols=24 Identities=29% Similarity=0.653 Sum_probs=16.1
Q ss_pred CCCCCCcccc----------cccHHHHHHHHHhc
Q 023394 250 PYCVDDDVQM----------KQDEEWLQEAMASL 273 (283)
Q Consensus 250 ~~C~~d~~~~----------k~~e~~~~ea~asl 273 (283)
+.|...+|.+ .-++.|||++|.-|
T Consensus 30 s~C~~~aVIf~tk~g~~vC~dP~~~WVk~~i~~L 63 (73)
T d1eiga_ 30 STCLKAGVIFTTKKGQQSCGDPKQEWVQRYMKNL 63 (73)
T ss_dssp SSSSSCCEEEEETTSCCEEECTTSHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCEEeCCCChHHHHHHHHHH
Confidence 3566665552 23488999999765
No 5
>d1g2ta_ d.9.1.1 (A:) Eotaxin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.67 E-value=53 Score=22.12 Aligned_cols=24 Identities=21% Similarity=0.482 Sum_probs=16.5
Q ss_pred CCCCCCccc----------ccccHHHHHHHHHhc
Q 023394 250 PYCVDDDVQ----------MKQDEEWLQEAMASL 273 (283)
Q Consensus 250 ~~C~~d~~~----------~k~~e~~~~ea~asl 273 (283)
+.|...+|. ..-++.|||++|..|
T Consensus 32 ~~C~~~aVIf~tk~g~~iC~~P~~~WVq~~i~~l 65 (71)
T d1g2ta_ 32 NSCSQRAVIFTTKRGKKVCTHPRKKWVQKYISLL 65 (71)
T ss_dssp TTSSSCCEEEEESSSCEEEECSSSHHHHHHHHHS
T ss_pred CCCCCceEEEEECCCCEEeCCCChHHHHHHHHHH
Confidence 346666665 233488999999865
No 6
>d1f2la_ d.9.1.1 (A:) Chemokine domain of fractalkine {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.72 E-value=36 Score=22.97 Aligned_cols=12 Identities=42% Similarity=1.008 Sum_probs=9.8
Q ss_pred cHHHHHHHHHhc
Q 023394 262 DEEWLQEAMASL 273 (283)
Q Consensus 262 ~e~~~~ea~asl 273 (283)
++.|||++|.-|
T Consensus 50 ~~~WVq~~i~~l 61 (64)
T d1f2la_ 50 KEQWVKDAMQHL 61 (64)
T ss_dssp TSHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 488999999754
No 7
>d2hcca_ d.9.1.1 (A:) Chemokine hcc-2 (macrophage inflammatory protein-5) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.07 E-value=50 Score=22.07 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=16.8
Q ss_pred CCCCCCccc----------ccccHHHHHHHHHhc
Q 023394 250 PYCVDDDVQ----------MKQDEEWLQEAMASL 273 (283)
Q Consensus 250 ~~C~~d~~~----------~k~~e~~~~ea~asl 273 (283)
+.|...+|. ..-++.|||++|.-|
T Consensus 28 ~~C~~~aVIf~tkkg~~iCadP~~~WVk~~~~~L 61 (66)
T d2hcca_ 28 SECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKL 61 (66)
T ss_dssp TTSSSCCEEEEETTTEEEEECSSCTTHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCEEeCCCChHHHHHHHHHH
Confidence 457777665 233488999999766
No 8
>d1m8aa_ d.9.1.1 (A:) Macrophage inflammatory protein, MIP {Human (Homo sapiens), ccl20/mip-3a [TaxId: 9606]}
Probab=9.73 E-value=76 Score=20.46 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=16.7
Q ss_pred CCCCCCCcccc----------cccHHHHHHHHHhc
Q 023394 249 NPYCVDDDVQM----------KQDEEWLQEAMASL 273 (283)
Q Consensus 249 e~~C~~d~~~~----------k~~e~~~~ea~asl 273 (283)
...|...+|.+ .-++.|||++|.-|
T Consensus 25 ~~~C~~~aVIf~tk~g~~iC~dP~~~WVk~~i~~l 59 (61)
T d1m8aa_ 25 NEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLL 59 (61)
T ss_dssp TTTSSSCEEEEEETTCCEEEECTTSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCEEeCCCChHHHHHHHHHh
Confidence 35676666652 23488999999754
No 9
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=9.69 E-value=77 Score=24.32 Aligned_cols=24 Identities=17% Similarity=-0.045 Sum_probs=20.5
Q ss_pred ccccCCHHHHHHHHHHHHHHhhhc
Q 023394 176 KVGRYSVEERKDRILRYLKKKNQR 199 (283)
Q Consensus 176 ~ig~~s~~eR~~~l~RYreKRk~R 199 (283)
--|.++.++|.+.+.+||+.+.+=
T Consensus 61 ~hg~~~~~eR~~~l~~Fr~g~~~v 84 (181)
T d1t5la2 61 LHSEIKTLERIEIIRDLRLGKYDV 84 (181)
T ss_dssp ECSSCCHHHHHHHHHHHHHTSCSE
T ss_pred ecCCccHHHHHHHHHHHHCCCCCE
Confidence 457899999999999999988653
No 10
>d1nr4a_ d.9.1.1 (A:) Thymus and activation-regulated chemokine, TRAC {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.68 E-value=75 Score=21.06 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=16.2
Q ss_pred CCCCCCcccc----------cccHHHHHHHHHhc
Q 023394 250 PYCVDDDVQM----------KQDEEWLQEAMASL 273 (283)
Q Consensus 250 ~~C~~d~~~~----------k~~e~~~~ea~asl 273 (283)
+.|...+|.+ .-++.|||++|.-|
T Consensus 31 ~~C~~~avIf~tk~g~~iC~dP~~~WVq~~i~~l 64 (67)
T d1nr4a_ 31 EDCSRDAIVFVTVQGRAICSDPNNKRVKNAVKYL 64 (67)
T ss_dssp TTSSSCCEEEEETTSCEEEECTTSHHHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCCEEeCCCChHHHHHHHHHH
Confidence 4577766652 23488999998754
Done!