Query 023395
Match_columns 283
No_of_seqs 231 out of 576
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:42:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02309 AUX_IAA: AUX/IAA fami 100.0 2.2E-57 4.8E-62 403.9 0.3 199 29-276 1-208 (215)
2 PF00564 PB1: PB1 domain; Int 97.1 0.0022 4.7E-08 48.3 6.8 67 175-265 3-70 (84)
3 cd06398 PB1_Joka2 The PB1 doma 97.0 0.003 6.5E-08 50.6 6.8 68 175-266 2-72 (91)
4 cd06407 PB1_NLP A PB1 domain i 96.8 0.0054 1.2E-07 48.2 7.0 65 175-265 2-66 (82)
5 smart00666 PB1 PB1 domain. Pho 96.4 0.02 4.4E-07 43.0 7.7 65 176-265 4-69 (81)
6 cd06396 PB1_NBR1 The PB1 domai 96.3 0.014 3E-07 46.4 6.4 63 176-263 3-66 (81)
7 cd05992 PB1 The PB1 domain is 96.3 0.028 6E-07 42.0 7.7 66 175-265 2-69 (81)
8 cd06409 PB1_MUG70 The MUG70 pr 95.3 0.036 7.9E-07 44.4 5.2 60 183-264 7-68 (86)
9 cd06403 PB1_Par6 The PB1 domai 95.0 0.067 1.4E-06 42.6 5.7 64 176-264 3-66 (80)
10 cd06404 PB1_aPKC PB1 domain is 94.8 0.16 3.4E-06 40.7 7.3 69 176-270 3-71 (83)
11 cd06401 PB1_TFG The PB1 domain 94.4 0.14 3.1E-06 40.8 6.2 58 176-255 3-61 (81)
12 cd06402 PB1_p62 The PB1 domain 93.9 0.28 6.2E-06 39.4 7.0 59 175-255 2-65 (87)
13 cd06397 PB1_UP1 Uncharacterize 93.1 0.34 7.4E-06 38.8 6.2 63 176-265 3-65 (82)
14 cd06408 PB1_NoxR The PB1 domai 88.9 1.5 3.4E-05 35.2 6.3 65 174-265 3-68 (86)
15 cd06406 PB1_P67 A PB1 domain i 59.7 45 0.00097 26.6 6.6 76 174-276 3-79 (80)
16 cd06399 PB1_P40 The PB1 domain 57.9 18 0.00039 29.7 4.1 41 189-254 22-62 (92)
17 PF10411 DsbC_N: Disulfide bon 46.8 17 0.00036 26.5 2.2 16 240-255 35-50 (57)
18 cd06395 PB1_Map2k5 PB1 domain 44.3 43 0.00092 27.3 4.3 50 181-254 9-58 (91)
19 PF00788 RA: Ras association ( 23.4 2.9E+02 0.0064 20.3 5.7 68 174-262 3-76 (93)
No 1
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=100.00 E-value=2.2e-57 Score=403.86 Aligned_cols=199 Identities=38% Similarity=0.539 Sum_probs=6.0
Q ss_pred CCCccceeccccCCCCCCC----CC--CCCCccccCcccccccccCCCCCCCCCCCCCCCCCCCCccccccccc-CCCCC
Q 023395 29 VESDDDELELGLGLSLGGV----GG--GGKGKVVSSWGECGRILTAKDFPSAGRRPSNASSSSPPVAVSGTKRA-ANSVP 101 (283)
Q Consensus 29 ~~~~etEL~LGLpg~~g~~----~~--~~k~~~krgfset~~lL~~k~~~~~~~~~~~~~s~~~~~~~~~~kr~-~~~~~ 101 (283)
|||++|||||||||+.... .. ......||+|+++++.-.......... ... ... ....... .....
T Consensus 1 ln~~~TELrLGLPG~~~~~~~~~~~~~~~~~~~kR~F~~aid~~~~~~~~~~~~--~~~----~~~-~~~~~~~~~~~~~ 73 (215)
T PF02309_consen 1 LNLKATELRLGLPGSESPDASSSSSSKKSSSGNKRGFSEAIDSSSSNSQSSSSS--SSD----SSS-SSSSSSTSSSSSD 73 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCchhhhhcccCCCCCCCCcccccccccccCcccccchhhhhhccccccccccc--ccc----cCc-ccccccccccccc
Confidence 7899999999999973221 00 224456999999988743221111000 000 000 0000000 01111
Q ss_pred CCCCCCCCCCCCcccCCCchhhhhhccccccCCCCchhhhhhhcccccchhhhhhhcCCCCCccccccccccceeEEEec
Q 023395 102 REGESSPPSASQVVGWPPIGAYRMNSLVNQAKAPISEEEKVADEKDKSKDASKKKICNGNKTNNIFSEKAHLGFVKVNMD 181 (283)
Q Consensus 102 ~~~~~ppa~~aqVVGWPPVRS~RkN~~~~q~k~~~~e~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~s~~fVKV~Md 181 (283)
.....+|+.++|||||||||+||+|++...+.. ..++||||+||
T Consensus 74 ~~~~~~p~~~~~~vgwpp~~s~r~n~~~~~~~~------------------------------------~~~~~vKV~md 117 (215)
T PF02309_consen 74 SSSSSPPASKAQVVGWPPVRSFRKNSLSEKQSS------------------------------------SSRSYVKVNMD 117 (215)
T ss_dssp ------------BTTBS----S----------------------------------------------------------
T ss_pred cccCCCCcccccccCCCcccccccccccccccc------------------------------------cCCceeEEEec
Confidence 233344544499999999999999998721100 01379999999
Q ss_pred CcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcC--CCCceEEEEEeCCCCeEEccCcChHH
Q 023395 182 GVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLD--GLSEFVLTYEDKEGDWMLVGDVPWRY 259 (283)
Q Consensus 182 G~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D--~~seyvltYEDkEGDwMLVGDVPWem 259 (283)
|+||||||||++|+||++|+.+|++||.+|.+..++. +..++.++++ ++++|+|||||+||||||||||||+|
T Consensus 118 G~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~ 192 (215)
T PF02309_consen 118 GVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGS-----HGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEE 192 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccceecCHHHhhCHHHHHHHHHHhcCCCCcccccc-----ccccchhhccccCCcceeEEEECCCCCEEEecCCCHHH
Confidence 9999999999999999999999999998876654422 1223334444 45699999999999999999999999
Q ss_pred HHHHhhhheeecceeec
Q 023395 260 ATIILHLGVLNMVYCEV 276 (283)
Q Consensus 260 Fv~sVr~i~l~~~~~~~ 276 (283)
||++||||+| +..-|+
T Consensus 193 F~~~vkRl~I-~~~~e~ 208 (215)
T PF02309_consen 193 FVKSVKRLRI-MKSSEA 208 (215)
T ss_dssp -----------------
T ss_pred HHHHhhccEE-ecHHHh
Confidence 9999998888 444443
No 2
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=97.09 E-value=0.0022 Score=48.32 Aligned_cols=67 Identities=28% Similarity=0.395 Sum_probs=54.2
Q ss_pred eeEEEecCcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEcc-
Q 023395 175 FVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG- 253 (283)
Q Consensus 175 fVKV~MdG~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVG- 253 (283)
-||+...|. +=|.+.+..--+|++|...+++.|.. . ...+.|.|.|.||||..+-
T Consensus 3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~-----~------------------~~~~~l~Y~D~dgD~V~i~s 58 (84)
T PF00564_consen 3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGL-----L------------------DEDFQLKYKDEDGDLVTISS 58 (84)
T ss_dssp EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTT-----S------------------TSSEEEEEEETTSSEEEESS
T ss_pred EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCC-----C------------------CccEEEEeeCCCCCEEEeCC
Confidence 489999997 43458888888999999999999972 1 1468999999999999887
Q ss_pred CcChHHHHHHhh
Q 023395 254 DVPWRYATIILH 265 (283)
Q Consensus 254 DVPWemFv~sVr 265 (283)
|.=|++.++.++
T Consensus 59 d~Dl~~a~~~~~ 70 (84)
T PF00564_consen 59 DEDLQEAIEQAK 70 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455788777775
No 3
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=96.96 E-value=0.003 Score=50.65 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=52.1
Q ss_pred eeEEEecCcccceeeecC---CCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEE
Q 023395 175 FVKVNMDGVPIGRKVDLN---AHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWML 251 (283)
Q Consensus 175 fVKV~MdG~piGRKVDL~---~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwML 251 (283)
-|||.-+|.-+=-++++. ..-+|++|.+.+.+.|. +. ...+|+|.|.|.||||..
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~-----l~-----------------~~~~~~l~Y~Dedgd~V~ 59 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFS-----LS-----------------PDADLSLTYTDEDGDVVT 59 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhC-----CC-----------------CCCcEEEEEECCCCCEEE
Confidence 489999998444455553 46799999999999997 32 125799999999999999
Q ss_pred ccCcChHHHHHHhhh
Q 023395 252 VGDVPWRYATIILHL 266 (283)
Q Consensus 252 VGDVPWemFv~sVr~ 266 (283)
+-+. +.|...+..
T Consensus 60 l~~D--~DL~~a~~~ 72 (91)
T cd06398 60 LVDD--NDLTDAIQY 72 (91)
T ss_pred EccH--HHHHHHHHH
Confidence 8765 677766653
No 4
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=96.79 E-value=0.0054 Score=48.21 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=48.3
Q ss_pred eeEEEecCcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEccC
Q 023395 175 FVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGD 254 (283)
Q Consensus 175 fVKV~MdG~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVGD 254 (283)
=|||...|. -+.+-|..--+|++|.+.+.++|. +. ....|.|-|.|.||||.++--
T Consensus 2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~-----~~-----------------~~~~f~LkY~Ddegd~v~lts 57 (82)
T cd06407 2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFK-----LD-----------------DMSAFDLKYLDDDEEWVLLTC 57 (82)
T ss_pred EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhC-----CC-----------------CCCeeEEEEECCCCCeEEeec
Confidence 389999887 445556666699999999999997 21 125799999999999998753
Q ss_pred cChHHHHHHhh
Q 023395 255 VPWRYATIILH 265 (283)
Q Consensus 255 VPWemFv~sVr 265 (283)
. ..+-++++
T Consensus 58 d--~DL~eai~ 66 (82)
T cd06407 58 D--ADLEECID 66 (82)
T ss_pred H--HHHHHHHH
Confidence 3 44555544
No 5
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=96.42 E-value=0.02 Score=43.03 Aligned_cols=65 Identities=25% Similarity=0.399 Sum_probs=51.6
Q ss_pred eEEEecCcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEcc-C
Q 023395 176 VKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG-D 254 (283)
Q Consensus 176 VKV~MdG~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVG-D 254 (283)
|||.-.| --|.+-+..--+|++|...+.+.|. .. ...+.|.|+|.||||..+- |
T Consensus 4 vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~-----~~------------------~~~~~l~Y~Dedgd~v~l~sd 58 (81)
T smart00666 4 VKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFG-----LD------------------NQSFTLKYQDEDGDLVSLTSD 58 (81)
T ss_pred EEEEECC--EEEEEEECCCCCHHHHHHHHHHHhC-----CC------------------CCCeEEEEECCCCCEEEecCH
Confidence 6777754 3677778888999999999999997 21 1368999999999998766 5
Q ss_pred cChHHHHHHhh
Q 023395 255 VPWRYATIILH 265 (283)
Q Consensus 255 VPWemFv~sVr 265 (283)
.=|++.+..++
T Consensus 59 ~Dl~~a~~~~~ 69 (81)
T smart00666 59 EDLEEAIEEYD 69 (81)
T ss_pred HHHHHHHHHHH
Confidence 77788777776
No 6
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=96.30 E-value=0.014 Score=46.39 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=48.9
Q ss_pred eEEEecCcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEcc-C
Q 023395 176 VKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG-D 254 (283)
Q Consensus 176 VKV~MdG~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVG-D 254 (283)
|||.-.|.-+=-+++-+..-+|++|...+.++|. +. .|.|.|-|.||||.++= |
T Consensus 3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~-----l~--------------------~f~lKYlDde~e~v~lssd 57 (81)
T cd06396 3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFG-----LN--------------------DIQIKYVDEENEEVSVNSQ 57 (81)
T ss_pred EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhC-----CC--------------------cceeEEEcCCCCEEEEEch
Confidence 7889999877677777778899999999999997 21 47899999999998874 3
Q ss_pred cChHHHHHH
Q 023395 255 VPWRYATII 263 (283)
Q Consensus 255 VPWemFv~s 263 (283)
.=-++.+..
T Consensus 58 ~eLeE~~rl 66 (81)
T cd06396 58 GEYEEALKS 66 (81)
T ss_pred hhHHHHHHH
Confidence 333444433
No 7
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=96.27 E-value=0.028 Score=41.99 Aligned_cols=66 Identities=26% Similarity=0.333 Sum_probs=50.2
Q ss_pred eeEEEecCcccceeeecC-CCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEcc
Q 023395 175 FVKVNMDGVPIGRKVDLN-AHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG 253 (283)
Q Consensus 175 fVKV~MdG~piGRKVDL~-~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVG 253 (283)
-|||+-.|. =|.+=+. ..-+|++|...|.+.|. .. ...+.+.|.|.||||..+.
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~-----~~------------------~~~~~l~y~D~e~d~v~l~ 56 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFG-----LD------------------AVSFKLKYPDEDGDLVTIS 56 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhC-----CC------------------CCcEEEEeeCCCCCEEEeC
Confidence 377777765 3444444 88899999999999997 21 0368999999999999998
Q ss_pred C-cChHHHHHHhh
Q 023395 254 D-VPWRYATIILH 265 (283)
Q Consensus 254 D-VPWemFv~sVr 265 (283)
+ .=|++.++.++
T Consensus 57 sd~Dl~~a~~~~~ 69 (81)
T cd05992 57 SDEDLEEAIEEAR 69 (81)
T ss_pred CHHHHHHHHHHHh
Confidence 7 66666666665
No 8
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=95.34 E-value=0.036 Score=44.37 Aligned_cols=60 Identities=22% Similarity=0.242 Sum_probs=42.1
Q ss_pred cccceeeecC--CCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEccCcChHHH
Q 023395 183 VPIGRKVDLN--AHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDVPWRYA 260 (283)
Q Consensus 183 ~piGRKVDL~--~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVGDVPWemF 260 (283)
.|-||.+=++ ...||.+|..++.+-|+ +. +. ....|.|.|.|.||||.|.--. ...
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~-----~d-------~~--------~~~~~~L~YlDDEgD~VllT~D--~DL 64 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLG-----DD-------DF--------ETHLYALSYVDDEGDIVLITSD--SDL 64 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhC-----Cc-------cc--------cCCcccEEEEcCCCCEEEEecc--chH
Confidence 4567765554 47899999999999997 22 00 1257999999999999987532 333
Q ss_pred HHHh
Q 023395 261 TIIL 264 (283)
Q Consensus 261 v~sV 264 (283)
+++|
T Consensus 65 ~e~v 68 (86)
T cd06409 65 VAAV 68 (86)
T ss_pred HHHH
Confidence 4444
No 9
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=95.01 E-value=0.067 Score=42.60 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=44.8
Q ss_pred eEEEecCcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEccCc
Q 023395 176 VKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDV 255 (283)
Q Consensus 176 VKV~MdG~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVGDV 255 (283)
||..-|..=-=-.+|.....+|++++.-|+.||. +. ...|+|.|.|.+||.+-+-..
T Consensus 3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~-----l~------------------~~~f~i~Y~D~~gDLLPInND 59 (80)
T cd06403 3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHH-----IP------------------NVDFLIGYTDPHGDLLPINND 59 (80)
T ss_pred eecccCCeEEEEEeccccCcCHHHHHHHHHHHhC-----CC------------------CCcEEEEEeCCCCCEecccCc
Confidence 5555555422224555566999999999999997 32 147999999999999988643
Q ss_pred ChHHHHHHh
Q 023395 256 PWRYATIIL 264 (283)
Q Consensus 256 PWemFv~sV 264 (283)
+.|.+.+
T Consensus 60 --dNf~kAl 66 (80)
T cd06403 60 --DNFLKAL 66 (80)
T ss_pred --HHHHHHH
Confidence 4444443
No 10
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=94.78 E-value=0.16 Score=40.73 Aligned_cols=69 Identities=25% Similarity=0.249 Sum_probs=53.8
Q ss_pred eEEEecCcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEccCc
Q 023395 176 VKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDV 255 (283)
Q Consensus 176 VKV~MdG~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVGDV 255 (283)
||+.-.|.-.--.+|. .-+|++|.+.+.+||.. . ....|++.|.|.|||---+...
T Consensus 3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-----~-----------------~~q~ft~kw~DEEGDp~tiSS~ 58 (83)
T cd06404 3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-----H-----------------NDQPFTLKWIDEEGDPCTISSQ 58 (83)
T ss_pred EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-----C-----------------CCCcEEEEEECCCCCceeecCH
Confidence 7889999855555665 77899999999999982 1 1246999999999999988766
Q ss_pred ChHHHHHHhhhheee
Q 023395 256 PWRYATIILHLGVLN 270 (283)
Q Consensus 256 PWemFv~sVr~i~l~ 270 (283)
+++.+..|+--++
T Consensus 59 --~EL~EA~rl~~~n 71 (83)
T cd06404 59 --MELEEAFRLYELN 71 (83)
T ss_pred --HHHHHHHHHHHhc
Confidence 6777777765554
No 11
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=94.41 E-value=0.14 Score=40.79 Aligned_cols=58 Identities=19% Similarity=0.477 Sum_probs=42.0
Q ss_pred eEEEecCcccceeeecCCC-cChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEccC
Q 023395 176 VKVNMDGVPIGRKVDLNAH-ASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGD 254 (283)
Q Consensus 176 VKV~MdG~piGRKVDL~~~-~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVGD 254 (283)
+|+.-.+. | |++=+..- -+|.+|...+.+.|..-. -....+.+.|.|.|||+.-|-+
T Consensus 3 iK~~~g~D-i-R~~~~~~~~~t~~~L~~~v~~~F~~~~--------------------~~~~~flIKYkD~dGDlVTIts 60 (81)
T cd06401 3 LKAQLGDD-I-RRIPIHNEDITYDELLLMMQRVFRGKL--------------------GSSDDVLIKYKDEDGDLITIFD 60 (81)
T ss_pred EEEEeCCe-E-EEEeccCccccHHHHHHHHHHHhcccc--------------------CCcccEEEEEECCCCCEEEecc
Confidence 67666654 4 44444432 399999999999998210 1235799999999999999987
Q ss_pred c
Q 023395 255 V 255 (283)
Q Consensus 255 V 255 (283)
-
T Consensus 61 ~ 61 (81)
T cd06401 61 S 61 (81)
T ss_pred H
Confidence 4
No 12
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=93.85 E-value=0.28 Score=39.37 Aligned_cols=59 Identities=27% Similarity=0.370 Sum_probs=42.6
Q ss_pred eeEEEecC---cccceee--ecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCe
Q 023395 175 FVKVNMDG---VPIGRKV--DLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDW 249 (283)
Q Consensus 175 fVKV~MdG---~piGRKV--DL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDw 249 (283)
+||.+..| .+==|++ |=....+|++|...+.++|.. + . ...|+|.|.|.|||.
T Consensus 2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~----l----------------~--~~~ftlky~DeeGDl 59 (87)
T cd06402 2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS----L----------------R--GKNFQLFWKDEEGDL 59 (87)
T ss_pred eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc----c----------------C--CCcEEEEEECCCCCE
Confidence 57777766 2223444 446667999999999999962 1 1 147999999999999
Q ss_pred EEccCc
Q 023395 250 MLVGDV 255 (283)
Q Consensus 250 MLVGDV 255 (283)
.-+-..
T Consensus 60 vtIssd 65 (87)
T cd06402 60 VAFSSD 65 (87)
T ss_pred EeecCH
Confidence 877653
No 13
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=93.09 E-value=0.34 Score=38.79 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=48.1
Q ss_pred eEEEecCcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEccCc
Q 023395 176 VKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDV 255 (283)
Q Consensus 176 VKV~MdG~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVGDV 255 (283)
-||.-.|. .|++-...-=+|..|...|+.+|. +. . -.+.|||.|.|||..-+-|.
T Consensus 3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~-----lp----~--------------~~~~vtYiDeD~D~ITlssd 57 (82)
T cd06397 3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYN-----LP----E--------------IKVGVTYIDNDNDEITLSSN 57 (82)
T ss_pred EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhC-----CC----h--------------hHeEEEEEcCCCCEEEecch
Confidence 37777774 788888888899999999999998 32 0 12889999999999877654
Q ss_pred ChHHHHHHhh
Q 023395 256 PWRYATIILH 265 (283)
Q Consensus 256 PWemFv~sVr 265 (283)
+++.+..|
T Consensus 58 --~eL~d~~~ 65 (82)
T cd06397 58 --KELQDFYR 65 (82)
T ss_pred --HHHHHHHH
Confidence 44444444
No 14
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=88.91 E-value=1.5 Score=35.20 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=49.4
Q ss_pred ceeEEEecCcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEcc
Q 023395 174 GFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG 253 (283)
Q Consensus 174 ~fVKV~MdG~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVG 253 (283)
.-|||+-.|. .|-|-+..-=+|++|...+.++|. +. ..++|-|.|. ||..-++
T Consensus 3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~-----~~-------------------~~~~iKykDE-GD~iti~ 55 (86)
T cd06408 3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFG-----FK-------------------RRLKIKMKDD-GDMITMG 55 (86)
T ss_pred EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhC-----CC-------------------CceEEEEEcC-CCCcccc
Confidence 4589998887 566666667779999999999997 21 2688999999 9999888
Q ss_pred Cc-ChHHHHHHhh
Q 023395 254 DV-PWRYATIILH 265 (283)
Q Consensus 254 DV-PWemFv~sVr 265 (283)
|- =-+|=+.++|
T Consensus 56 sq~DLd~Ai~~a~ 68 (86)
T cd06408 56 DQDDLDMAIDTAR 68 (86)
T ss_pred CHHHHHHHHHHHH
Confidence 73 3345555554
No 15
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=59.65 E-value=45 Score=26.64 Aligned_cols=76 Identities=17% Similarity=0.286 Sum_probs=54.2
Q ss_pred ceeEEEecCcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCC-CeEEc
Q 023395 174 GFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEG-DWMLV 252 (283)
Q Consensus 174 ~fVKV~MdG~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEG-DwMLV 252 (283)
.-|||+-.+ .=-|-...=-+|++|...|.+-+. +. + .+-+|.|.|.+. +...+
T Consensus 3 ~vvKV~f~~---tIaIrvp~~~~y~~L~~ki~~kLk-----l~---~---------------e~i~LsYkde~s~~~v~l 56 (80)
T cd06406 3 YVVKVHFKY---TVAIQVARGLSYATLLQKISSKLE-----LP---A---------------EHITLSYKSEASGEDVIL 56 (80)
T ss_pred eEEEEEEEE---EEEEEcCCCCCHHHHHHHHHHHhC-----CC---c---------------hhcEEEeccCCCCCccCc
Confidence 358999987 344556666789999999998887 21 1 245788998874 44455
Q ss_pred cCcChHHHHHHhhhheeecceeec
Q 023395 253 GDVPWRYATIILHLGVLNMVYCEV 276 (283)
Q Consensus 253 GDVPWemFv~sVr~i~l~~~~~~~ 276 (283)
+|-=|+.-.+.||--.|. -.|+.
T Consensus 57 ~d~dle~aws~~~~~~lT-LwC~~ 79 (80)
T cd06406 57 SDTNMEDVWSQAKDGCLT-LWCTL 79 (80)
T ss_pred ChHHHHHHHHhhcCCeEE-EEEec
Confidence 999999999999844442 26764
No 16
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=57.93 E-value=18 Score=29.68 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=32.1
Q ss_pred eecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEccC
Q 023395 189 VDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGD 254 (283)
Q Consensus 189 VDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVGD 254 (283)
=||...-+|.+|..-..+-|.. .+-+|-|.|.|||..-+=|
T Consensus 22 e~l~~~P~~kdLl~lmr~~f~~-------------------------~dIaLNYrD~EGDLIRlld 62 (92)
T cd06399 22 EDLSSTPLLKDLLELTRREFQR-------------------------EDIALNYRDAEGDLIRLLS 62 (92)
T ss_pred cccccCccHHHHHHHHHHHhch-------------------------hheeeeeecCCCCEEEEcc
Confidence 3688888999999999888862 1456889999999875533
No 17
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=46.81 E-value=17 Score=26.46 Aligned_cols=16 Identities=25% Similarity=0.829 Sum_probs=14.0
Q ss_pred EEEEeCCCCeEEccCc
Q 023395 240 LTYEDKEGDWMLVGDV 255 (283)
Q Consensus 240 ltYEDkEGDwMLVGDV 255 (283)
+.|.|.||+.+++|+.
T Consensus 35 i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 35 ILYVDEDGRYLIQGQL 50 (57)
T ss_dssp EEEEETTSSEEEES-E
T ss_pred EEEEcCCCCEEEEeEE
Confidence 8899999999999974
No 18
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=44.33 E-value=43 Score=27.31 Aligned_cols=50 Identities=18% Similarity=0.379 Sum_probs=35.7
Q ss_pred cCcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEccC
Q 023395 181 DGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGD 254 (283)
Q Consensus 181 dG~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVGD 254 (283)
+|..+--.||...+=++.+|..++.+..-.-|. -.+-|||.|||+.-|--
T Consensus 9 ~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~aT~------------------------tAFeYEDE~gDRITVRS 58 (91)
T cd06395 9 NGGAVDWTVQSGPQLLFRDVLDVIGQVLPEATT------------------------TAFEYEDEDGDRITVRS 58 (91)
T ss_pred CCCcccccccCcccccHHHHHHHHHHhcccccc------------------------cceeeccccCCeeEecc
Confidence 344566677877778899999988887753221 12559999999998853
No 19
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=23.36 E-value=2.9e+02 Score=20.34 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=48.1
Q ss_pred ceeEEEecCccc---ceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEE--EEeCCCC
Q 023395 174 GFVKVNMDGVPI---GRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLT--YEDKEGD 248 (283)
Q Consensus 174 ~fVKV~MdG~pi---GRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvlt--YEDkEGD 248 (283)
.++||+++..-- -+.|=+.....-.+++.++-+.|. +. +...+|.|. -......
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~-----l~----------------~~~~~y~L~~~~~~~~~e 61 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFG-----LA----------------EDPSDYCLVEVEESGGEE 61 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTT-----TS----------------SSGGGEEEEEEECTTTEE
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhC-----CC----------------CCCCCEEEEEEEcCCCEE
Confidence 489999987653 678889999999999999999997 31 122579994 4455556
Q ss_pred eEEccC-cChHHHHH
Q 023395 249 WMLVGD-VPWRYATI 262 (283)
Q Consensus 249 wMLVGD-VPWemFv~ 262 (283)
+.|--| .|+..+..
T Consensus 62 r~L~~~E~pl~i~~~ 76 (93)
T PF00788_consen 62 RPLDDDECPLQIQLQ 76 (93)
T ss_dssp EEETTTSBHHHHHHT
T ss_pred EEcCCCCchHHHHHh
Confidence 666543 56665543
Done!