Query 023395
Match_columns 283
No_of_seqs 231 out of 576
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 06:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 95.5 0.032 1.1E-06 43.7 6.4 69 174-268 7-75 (89)
2 1wmh_B Partitioning defective- 95.3 0.04 1.4E-06 43.1 6.4 67 174-265 7-73 (86)
3 2kkc_A Sequestosome-1; P62, PB 93.6 0.14 4.6E-06 41.1 6.0 60 174-255 6-80 (102)
4 2ktr_A Sequestosome-1; autopha 91.7 0.38 1.3E-05 39.4 6.4 60 174-255 21-95 (117)
5 1q1o_A Cell division control p 90.2 0.81 2.8E-05 36.5 6.8 74 174-265 6-86 (98)
6 1wj6_A KIAA0049 protein, RSGI 80.6 4.6 0.00016 32.4 6.7 66 174-266 15-80 (101)
7 1pqs_A Cell division control p 79.7 2.4 8.1E-05 32.1 4.5 57 191-265 8-65 (77)
8 2bkf_A Zinc-finger protein NBR 77.4 6.1 0.00021 30.9 6.4 65 174-265 7-71 (87)
9 1oey_J P40-PHOX, neutrophil cy 76.8 4.1 0.00014 33.0 5.3 41 190-255 28-68 (107)
10 1oey_A P67-PHOX, neutrophil cy 67.6 16 0.00056 28.0 6.6 75 174-275 6-81 (83)
11 1e8p_A Endoglucanase, dockerin 52.1 4.3 0.00015 28.4 0.8 13 239-251 20-32 (46)
12 2npt_A Dual specificity mitoge 29.1 97 0.0033 24.8 5.3 56 175-254 16-72 (106)
13 2j4m_A Endoglucanase 45A; dock 23.3 17 0.00058 29.1 -0.0 13 239-251 21-33 (100)
14 3o27_A Putative uncharacterize 22.7 42 0.0014 25.1 2.0 18 235-252 42-59 (68)
15 2i7u_A Four-alpha-helix bundle 21.7 13 0.00046 26.7 -0.8 10 6-15 24-33 (62)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.47 E-value=0.032 Score=43.67 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=50.8
Q ss_pred ceeEEEecCcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEcc
Q 023395 174 GFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG 253 (283)
Q Consensus 174 ~fVKV~MdG~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVG 253 (283)
.=||++-.|.-+ .+.+...-+|++|.+.|.++|. +. ....+++.|.|.|||+.-+-
T Consensus 7 vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~-----~~-----------------~~~~f~lky~DEeGD~itis 62 (89)
T 1vd2_A 7 VRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCS-----FD-----------------NEQLFTMKWIDEEGDPCTVS 62 (89)
T ss_dssp EEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTT-----CC-----------------SSCCEEEEECCSSSCCEECC
T ss_pred EEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhC-----CC-----------------CCCeEEEEEECCCCCccccc
Confidence 678999999744 4444456799999999999997 21 12469999999999998876
Q ss_pred CcChHHHHHHhhhhe
Q 023395 254 DVPWRYATIILHLGV 268 (283)
Q Consensus 254 DVPWemFv~sVr~i~ 268 (283)
.. ++.-...|+..
T Consensus 63 Sd--~EL~eAl~l~~ 75 (89)
T 1vd2_A 63 SQ--LELEEAFRLYE 75 (89)
T ss_dssp SH--HHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHH
Confidence 54 55555555433
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=95.28 E-value=0.04 Score=43.11 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=51.7
Q ss_pred ceeEEEecCcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEcc
Q 023395 174 GFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG 253 (283)
Q Consensus 174 ~fVKV~MdG~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVG 253 (283)
.-||..-|..--=-.+|-....+|++|+.-|+++|. +. ..+|++.|.|.|||++-+=
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~-----L~------------------~~~f~i~Y~D~dGDLlpIn 63 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ-----IP------------------GLDVLLGYTDAHGDLLPLT 63 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTT-----CT------------------TCCCEEEEECTTSCEEECC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcC-----CC------------------CCCEEEEEECCCCCEeeec
Confidence 568888888743335565677899999999999997 21 1369999999999999887
Q ss_pred CcChHHHHHHhh
Q 023395 254 DVPWRYATIILH 265 (283)
Q Consensus 254 DVPWemFv~sVr 265 (283)
+. ++|...+.
T Consensus 64 nD--dnl~~Al~ 73 (86)
T 1wmh_B 64 ND--DSLHRALA 73 (86)
T ss_dssp SH--HHHHHHTT
T ss_pred CH--HHHHHHHH
Confidence 76 67766653
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=93.60 E-value=0.14 Score=41.05 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=43.9
Q ss_pred ceeEEEecCc----ccceeeecCC-----------CcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCce
Q 023395 174 GFVKVNMDGV----PIGRKVDLNA-----------HASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEF 238 (283)
Q Consensus 174 ~fVKV~MdG~----piGRKVDL~~-----------~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~sey 238 (283)
.-||++..|. .==|++-|.. ..+|++|...+.++|.. |. +..|
T Consensus 6 ~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~--------------------l~--~~~f 63 (102)
T 2kkc_A 6 LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA--------------------LR--PGGF 63 (102)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT--------------------SC--SSCE
T ss_pred EEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc--------------------cC--CCcE
Confidence 6789888752 2345555532 24899999999999972 11 2469
Q ss_pred EEEEEeCCCCeEEccCc
Q 023395 239 VLTYEDKEGDWMLVGDV 255 (283)
Q Consensus 239 vltYEDkEGDwMLVGDV 255 (283)
+|.|.|.|||+.-+-+.
T Consensus 64 ~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 64 QAHYRAERGDLVAFSSD 80 (102)
T ss_dssp EEEEECTTCCEEEECSH
T ss_pred EEEEECCCCCEEEecCH
Confidence 99999999999888764
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=91.70 E-value=0.38 Score=39.45 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=43.9
Q ss_pred ceeEEEecCc----ccceeeecC-----------CCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCce
Q 023395 174 GFVKVNMDGV----PIGRKVDLN-----------AHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEF 238 (283)
Q Consensus 174 ~fVKV~MdG~----piGRKVDL~-----------~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~sey 238 (283)
.-||++..|. .==|++=|. .-.+|++|...+.++|.. + . ...|
T Consensus 21 l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~----L----------------~--~~~f 78 (117)
T 2ktr_A 21 LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA----L----------------R--PGGF 78 (117)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT----S----------------C--SSCE
T ss_pred EEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc----c----------------C--CCcE
Confidence 7899999752 123555553 135999999999999962 1 1 2469
Q ss_pred EEEEEeCCCCeEEccCc
Q 023395 239 VLTYEDKEGDWMLVGDV 255 (283)
Q Consensus 239 vltYEDkEGDwMLVGDV 255 (283)
+|.|.|.|||+.-+-..
T Consensus 79 ~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 79 QAHYRAERGDLVAFSSD 95 (117)
T ss_dssp EEEEECTTCCEEEECSH
T ss_pred EEEEECCCCCEEEecCH
Confidence 99999999999887654
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=90.17 E-value=0.81 Score=36.47 Aligned_cols=74 Identities=12% Similarity=0.239 Sum_probs=54.2
Q ss_pred ceeEEEecCc------ccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCC
Q 023395 174 GFVKVNMDGV------PIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEG 247 (283)
Q Consensus 174 ~fVKV~MdG~------piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEG 247 (283)
.-|||+-+.. .=.|.|=+..--+|++|...+.+-|..+. .. + -+....|-|+|.||
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-------~~--~---------i~~~~klkYkDEdG 67 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-------NN--N---------ISPITKIKYQDEDG 67 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-------SS--C---------CCCCCCEEEECSSS
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc-------cc--c---------ccceeEEEEEcCCC
Confidence 5788887742 12366667788899999999999998320 00 0 01346799999999
Q ss_pred CeEEccC-cChHHHHHHhh
Q 023395 248 DWMLVGD-VPWRYATIILH 265 (283)
Q Consensus 248 DwMLVGD-VPWemFv~sVr 265 (283)
|+...++ .=|+|=++++|
T Consensus 68 D~Vtl~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 68 DFVVLGSDEDWNVAKEMLA 86 (98)
T ss_dssp CEEEECSHHHHHHHHHHHH
T ss_pred CEEEEcCHHHHHHHHHHHH
Confidence 9987775 78999999987
No 6
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=80.56 E-value=4.6 Score=32.42 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=51.2
Q ss_pred ceeEEEecCcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEcc
Q 023395 174 GFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG 253 (283)
Q Consensus 174 ~fVKV~MdG~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVG 253 (283)
.-+||+--|...=--|.-..--++++|-..|..+|. + .+++|.|-|.|||-.-|
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~-----L--------------------~~~~IkY~DEenD~V~i- 68 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD-----L--------------------NTIQIKYLDEENEEVSI- 68 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHC-----C--------------------SSBCCEEECTTSCEECC-
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcC-----C--------------------CceEEEEecCCCCEEEE-
Confidence 468999999854444644457789999999999996 2 25789999999999888
Q ss_pred CcChHHHHHHhhh
Q 023395 254 DVPWRYATIILHL 266 (283)
Q Consensus 254 DVPWemFv~sVr~ 266 (283)
.-+.+|-+.+|.
T Consensus 69 -~Sq~E~eEAlkv 80 (101)
T 1wj6_A 69 -NSQGEYEEALKM 80 (101)
T ss_dssp -CSHHHHHHHHHH
T ss_pred -ecHHHHHHHHHH
Confidence 557888877763
No 7
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=79.71 E-value=2.4 Score=32.15 Aligned_cols=57 Identities=18% Similarity=0.372 Sum_probs=42.1
Q ss_pred cCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEcc-CcChHHHHHHhh
Q 023395 191 LNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG-DVPWRYATIILH 265 (283)
Q Consensus 191 L~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVG-DVPWemFv~sVr 265 (283)
...--+|++|...+.+-|..+ . ..+ -.....|-|.|.|||+...+ |.=|+|=+.++|
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~-~----~~~-------------~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~ 65 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNT-H----NNN-------------ISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTT-T----SSC-------------SCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHccc-c----ccc-------------ccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 444567999999999999832 0 001 02356789999999998766 578999999987
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=77.42 E-value=6.1 Score=30.87 Aligned_cols=65 Identities=11% Similarity=0.097 Sum_probs=46.2
Q ss_pred ceeEEEecCcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEcc
Q 023395 174 GFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG 253 (283)
Q Consensus 174 ~fVKV~MdG~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVG 253 (283)
.-+||+--|...=--|.-..--++++|-..|..+|. + ++++|.|-|.|||-.-|=
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~-----L--------------------~~~~ikY~DEenD~v~i~ 61 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD-----L--------------------NTIQIKYLDEENEEVSIN 61 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT-----C--------------------SSEEEEEECTTSCEEEEC
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcC-----C--------------------CceEEEEEcCCCCEEEEe
Confidence 457899999854334644447789999999999886 2 258999999999998774
Q ss_pred CcChHHHHHHhh
Q 023395 254 DVPWRYATIILH 265 (283)
Q Consensus 254 DVPWemFv~sVr 265 (283)
- =.+|-+.+|
T Consensus 62 S--q~E~eEAlk 71 (87)
T 2bkf_A 62 S--QGEYEEALK 71 (87)
T ss_dssp S--HHHHHHHHH
T ss_pred c--HHHHHHHHH
Confidence 3 234444444
No 9
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=76.75 E-value=4.1 Score=33.02 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=33.6
Q ss_pred ecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEccCc
Q 023395 190 DLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDV 255 (283)
Q Consensus 190 DL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVGDV 255 (283)
||...-.|++|..-..+-|.. .+-+|-|.|.|||+.-+=|.
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~-------------------------~DIaLNYrD~eGDLIrildd 68 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQR-------------------------EDIALNYRDAEGDLVRLLSD 68 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCC-------------------------SSEEEEEECTTSCEEECCSH
T ss_pred ccccCCCHHHHHHHHHHHhcc-------------------------cceeeeeecCCCCEEEEcch
Confidence 677788999999999999971 24678999999999877554
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=67.61 E-value=16 Score=27.99 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=56.9
Q ss_pred ceeEEEecCcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEe-CCCCeEEc
Q 023395 174 GFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYED-KEGDWMLV 252 (283)
Q Consensus 174 ~fVKV~MdG~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYED-kEGDwMLV 252 (283)
.=|||+-. +.-.|....=-+|.+|...|.+-+. +. + .+-+|-|.| .+|.|++.
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~-----l~---~---------------~~~~LsYk~~~s~~~vi~ 59 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLE-----LR---L---------------EHTKLSYRPRDSNELVPL 59 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTT-----CC---G---------------GGCCEEECCTTCSSCEEC
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhC-----CC---c---------------ceeEEEeeCCCCCCeecc
Confidence 45777776 7778888888899999999999886 21 1 123588999 68899999
Q ss_pred cCcChHHHHHHhhhheeecceee
Q 023395 253 GDVPWRYATIILHLGVLNMVYCE 275 (283)
Q Consensus 253 GDVPWemFv~sVr~i~l~~~~~~ 275 (283)
+|.=|+.-...|+--.| --||+
T Consensus 60 ~d~dl~~aw~~~~n~~L-tL~C~ 81 (83)
T 1oey_A 60 SEDSMKDAWGQVKNYCL-TLWCE 81 (83)
T ss_dssp CTTTHHHHHTTCBTTEE-EEEEC
T ss_pred ChHHHHHHHHhccCCcE-EEEEe
Confidence 99999998888773344 23775
No 11
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=52.12 E-value=4.3 Score=28.40 Aligned_cols=13 Identities=31% Similarity=0.825 Sum_probs=11.0
Q ss_pred EEEEEeCCCCeEE
Q 023395 239 VLTYEDKEGDWML 251 (283)
Q Consensus 239 vltYEDkEGDwML 251 (283)
.++|+|.||||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 4889999999954
No 12
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=29.06 E-value=97 Score=24.78 Aligned_cols=56 Identities=14% Similarity=0.354 Sum_probs=38.4
Q ss_pred eeEEEec-CcccceeeecCCCcChHHHHHHHHHHhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEeCCCCeEEcc
Q 023395 175 FVKVNMD-GVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG 253 (283)
Q Consensus 175 fVKV~Md-G~piGRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~D~~seyvltYEDkEGDwMLVG 253 (283)
-+.+... |-.+--.||-..+=.+.+|..++.+..-.-|. -.+-|||.+||+.-|-
T Consensus 16 VIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT~------------------------TAFeYEDE~gDRITVR 71 (106)
T 2npt_A 16 VIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATT------------------------TAFEYEDEDGDRITVR 71 (106)
T ss_dssp EEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSCC------------------------SEEEEECTTSCEEEEC
T ss_pred EEEEECCCCCccccccCCcccccHHHHHHHHHHhCcccee------------------------eeeeeccccCCeeEEc
Confidence 4445554 55577777777777899999999887753221 1356999999999885
Q ss_pred C
Q 023395 254 D 254 (283)
Q Consensus 254 D 254 (283)
-
T Consensus 72 S 72 (106)
T 2npt_A 72 S 72 (106)
T ss_dssp S
T ss_pred c
Confidence 3
No 13
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=23.26 E-value=17 Score=29.10 Aligned_cols=13 Identities=31% Similarity=0.825 Sum_probs=11.0
Q ss_pred EEEEEeCCCCeEE
Q 023395 239 VLTYEDKEGDWML 251 (283)
Q Consensus 239 vltYEDkEGDwML 251 (283)
.++|.|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 4889999999954
No 14
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=22.69 E-value=42 Score=25.12 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=15.7
Q ss_pred CCceEEEEEeCCCCeEEc
Q 023395 235 LSEFVLTYEDKEGDWMLV 252 (283)
Q Consensus 235 ~seyvltYEDkEGDwMLV 252 (283)
+-+|.+++||++|+.+|+
T Consensus 42 gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 42 DDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCEEEEEEEETTEEEEE
T ss_pred CCEEEEEEecCCCeEEEE
Confidence 458999999999999885
No 15
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=21.73 E-value=13 Score=26.68 Aligned_cols=10 Identities=70% Similarity=1.192 Sum_probs=4.8
Q ss_pred ccccccCCCC
Q 023395 6 GLLGVGGGGG 15 (283)
Q Consensus 6 ~~~~~g~g~~ 15 (283)
-++.||+|||
T Consensus 24 kllegggggg 33 (62)
T 2i7u_A 24 KLLEGGGGGG 33 (62)
T ss_dssp HHHHCSSCSS
T ss_pred HHHhcCCCCc
Confidence 3455653443
Done!