Query 023397
Match_columns 283
No_of_seqs 144 out of 705
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:06:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_U RPN8, 26S proteasome re 100.0 3.3E-63 1.1E-67 462.8 25.5 252 7-280 4-283 (338)
2 2o95_A 26S proteasome non-ATPa 100.0 1.8E-39 6.2E-44 279.1 22.2 172 4-193 3-181 (187)
3 4e0q_A COP9 signalosome comple 100.0 4.7E-41 1.6E-45 276.6 10.3 136 5-156 2-139 (141)
4 4b4t_V 26S proteasome regulato 100.0 2.2E-29 7.7E-34 231.4 18.3 230 6-266 22-289 (306)
5 2znr_A AMSH-like protease; met 99.2 1E-10 3.5E-15 99.2 11.9 121 7-156 7-134 (178)
6 3rzv_A STAM-binding protein; u 99.1 1.8E-09 6.2E-14 93.6 12.8 118 9-156 42-167 (211)
7 2kks_A Uncharacterized protein 98.7 1E-06 3.4E-11 71.9 16.1 128 11-176 2-136 (146)
8 2kcq_A MOV34/MPN/PAD-1 family; 98.4 1.1E-06 3.8E-11 72.2 9.4 129 12-177 2-141 (153)
9 1oi0_A AF2198, hypothetical pr 97.5 0.00057 2E-08 53.8 9.6 104 11-155 4-111 (124)
10 2p8r_A PRP8, PRE-mRNA-splicing 93.3 0.25 8.5E-06 43.9 7.9 91 51-156 59-168 (273)
11 2og4_A PRE-mRNA-splicing facto 90.7 0.62 2.1E-05 40.9 7.2 93 51-156 58-165 (254)
12 3sbg_A PRE-mRNA-splicing facto 87.1 1.3 4.6E-05 42.5 7.2 97 51-156 369-476 (565)
13 2akf_A Coronin-1A; coiled coil 72.1 8 0.00027 22.2 4.2 29 202-230 3-31 (32)
14 2rh2_A Dihydrofolate reductase 70.5 1.6 5.5E-05 28.6 1.2 13 102-114 24-36 (62)
15 2xpp_A IWS1, ECU08_0440; trans 29.5 72 0.0025 25.3 4.8 44 219-264 61-104 (145)
16 2hv8_D RAB11 family-interactin 26.3 37 0.0013 23.2 2.1 36 208-243 26-61 (64)
17 3hc1_A Uncharacterized HDOD do 22.0 1.9E+02 0.0065 25.0 6.7 49 221-272 13-61 (305)
18 3nfq_A Transcription factor IW 21.6 1.2E+02 0.0041 24.7 4.8 43 219-263 76-118 (170)
No 1
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-63 Score=462.76 Aligned_cols=252 Identities=24% Similarity=0.446 Sum_probs=177.8
Q ss_pred CCceEEEehhhhhhHHHHHHhhhccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEeEeeccCCCcc-----
Q 023397 7 SGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTH----- 81 (283)
Q Consensus 7 ~~~~V~vHPlVll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~~~~----- 81 (283)
+..+|.|||||||+|+|||+|.+.+ .+.||+|+|||.++|+.|||+|||++|++++++
T Consensus 4 ~~~~V~vhPlVll~I~dH~~R~~~~-----------------~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~ 66 (338)
T 4b4t_U 4 QHEKVTIAPLVLLSALDHYERTQTK-----------------ENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVW 66 (338)
T ss_dssp CCSEEEECHHHHHHHHHHHHHHTTT-----------------CCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCE
T ss_pred CCCEEEEecHHHHHHHHHHHHhhcC-----------------CCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccc
Confidence 4578999999999999999997543 247999999999999999999999999976543
Q ss_pred cccHHHHHHHHHHHHHhCCCcceEEEEecCCCCCcchHHHHHHHhhhCC-CcEEEEEcCCCCCCCCCcceEEEEeeeccc
Q 023397 82 SLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINE-SPVYVLLNPSINPAQKDLPVTIFESELHVI 160 (283)
Q Consensus 82 ~iD~~~~~~m~~l~k~V~p~~~iVGWY~tg~~~~~~d~~ih~~~~~~~~-~pi~L~~D~~~~~~~~~lpi~~y~~~~~~~ 160 (283)
++|++|+++|+++||+|||++.+||||+||+.++..|+.||++|+++++ +|++|++|+.. ..++||++||++.....
T Consensus 67 ~~D~~y~~~m~~~~kkV~~~e~iVGWY~tg~~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~--~~~~lpi~aY~s~~~~~ 144 (338)
T 4b4t_U 67 FLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQ--QGVGLPTDAYVAIEQVK 144 (338)
T ss_dssp EECHHHHHHHHHHHHHHCCSCEEEEEEECCSSCCSTHHHHHHHHGGGCCSCCCEEEECSCC--CSSSCSEEEEEEEEECS
T ss_pred cccHHHHHHHHHHHhhcCccCCEEEEEecCCCCCccHHHHHHHHHhccCCCcEEEEecCCC--CCCCcceEEEEeehhcc
Confidence 4899999999999999999999999999999999999999999999985 89999999986 45889999999865443
Q ss_pred c-C-CceeeEEEeeeeeecchhhHHHHHHHhccCCCCCCChhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 023397 161 E-G-IPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC 238 (283)
Q Consensus 161 ~-g-~~~~~f~~v~~~i~~~e~ErI~v~~l~~~~~~~~~~~~~~~~~~l~~~~~ai~~L~~~i~~i~~Yl~~V~~G~~~~ 238 (283)
+ | ..+..|+++|++|+++|+|||||+|++|.... .+...+..++..+.+|+++|+.||+.|++||++|.+|++|+
T Consensus 145 ~~~~~~~~~F~~lp~~i~~~eaE~Igv~~l~r~~~~---~~~~~l~~~l~~~~~al~~L~~~l~~i~~Yl~~V~~g~~~~ 221 (338)
T 4b4t_U 145 DDGTSTEKTFLHLPCTIEAEEAEEIGVEHLLRDVRD---QAAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPI 221 (338)
T ss_dssp SCSTTCEEEEEEECEEECSCHHHHHHHHHHHHHHSS---CC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred CCCcccccEEEEeeeEeecCcHHHHHHHHHHhcccc---CcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 3 3 34688999999999999999999999997433 23456778899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCh-----------------HHHHHHHH---HHHHHHHHHHHhhc
Q 023397 239 ENSLLRQVSSLLRRLPAIES-----------------EKFQDDFL---MVSLFSSFLNIFTI 280 (283)
Q Consensus 239 d~~ilR~i~~l~~~lP~~~~-----------------~~f~~~~~---~~~lmv~yLs~lt~ 280 (283)
|++|||+|+++|+++|.++. ++|+++|+ +|+|||+|||+|||
T Consensus 222 n~~ilr~l~~~~~~lP~l~~~~~~~~~~~~~~~~~~~~~f~~~f~~~~nD~Lmv~YLs~L~r 283 (338)
T 4b4t_U 222 NHTILGKLQDVFNLLPNLGTPDDDEIDVENHDRINISNNLQKALTVKTNDELMVIYISNLVR 283 (338)
T ss_dssp --------------------------------------------------------------
T ss_pred CHHHHHHHHHHHhhCCcCCcccccccccccccccchhHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 99999999999999999864 45888884 68999999999997
No 2
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=100.00 E-value=1.8e-39 Score=279.13 Aligned_cols=172 Identities=27% Similarity=0.467 Sum_probs=149.0
Q ss_pred CCCCCceEEEehhhhhhHHHHHHhhhccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEeEeeccCCCcc--
Q 023397 4 SSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTH-- 81 (283)
Q Consensus 4 ~~~~~~~V~vHPlVll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~~~~-- 81 (283)
|+.+..+|.|||+|+++|+|||+|...+ +.+.+|+|+|||.+.++.++|+|||++|+.+++.
T Consensus 3 ~~~~~~~V~i~plvllkI~~H~~r~~~~----------------~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~ 66 (187)
T 2o95_A 3 PELAVQKVVVHPLVLLSVVDHFNRIGKV----------------GNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDD 66 (187)
T ss_dssp CCCSCSEEEECHHHHHHHHHHHHHHHHT----------------TCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCT
T ss_pred CCCCCCEEEEchHHHHHHHHHHhhhccc----------------CCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCc
Confidence 4566679999999999999999998631 0257999999999999999999999999976533
Q ss_pred ---cccHHHHHHHHHHHHHhCCCcceEEEEecCCCCCcchHHHHHHHhhhCCCcEEEEEcCCCCCCCCCcceEEEEeeec
Q 023397 82 ---SLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELH 158 (283)
Q Consensus 82 ---~iD~~~~~~m~~l~k~V~p~~~iVGWY~tg~~~~~~d~~ih~~~~~~~~~pi~L~~D~~~~~~~~~lpi~~y~~~~~ 158 (283)
.+|.+|+++|++++++++|++.+||||++++..+..|..||++|++++++|++|++||... .+++|++||++...
T Consensus 67 ~~~~~d~ey~~~m~~~~~~v~~~~~iVGWY~s~~~~s~~d~~i~~~~~~~~~~~v~Livd~~~~--~~~l~i~ay~~~~~ 144 (187)
T 2o95_A 67 SVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPK--DLGLPTEAYISVEE 144 (187)
T ss_dssp TSEEECHHHHHHHHHHHHTTSSSCEEEEEEECCSSCCTTHHHHHHHHTTTCTTCEEEEECCCTT--C-CCSEEEEEEEEE
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCCEEEEEcCCCcCCcccHHHHHHHHhcCCCCEEEEECCCCC--CCCcCeEEEEEech
Confidence 5899999999999999999999999999999999999999999999999999999999853 34599999998644
Q ss_pred cc-cC-CceeeEEEeeeeeecchhhHHHHHHHhccCC
Q 023397 159 VI-EG-IPQLIFVRSSYTIETVEAERISVDHVAHLKP 193 (283)
Q Consensus 159 ~~-~g-~~~~~f~~v~~~i~~~e~ErI~v~~l~~~~~ 193 (283)
.. +| .....|+++|++|.++|+|||||+|++|...
T Consensus 145 ~~~~~~~~~~~F~~ip~~I~~~eaE~i~v~~l~~~~~ 181 (187)
T 2o95_A 145 VHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIK 181 (187)
T ss_dssp CC----CCEEEEEEEEEEECCCHHHHHHHHHHHHHCC
T ss_pred hcCCCCcccCEEEEeeEEEecCcHHHHHHHHHHhcCC
Confidence 43 33 2478899999999999999999999999754
No 3
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=100.00 E-value=4.7e-41 Score=276.64 Aligned_cols=136 Identities=42% Similarity=0.790 Sum_probs=112.0
Q ss_pred CCCCceEEEehhhhhhHHHHHHhhhccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEeEeeccCCCcc--c
Q 023397 5 SSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTH--S 82 (283)
Q Consensus 5 ~~~~~~V~vHPlVll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~~~~--~ 82 (283)
++++.+|+|||||||+|+|||+|++.+. +.+.+|+|+|||.++++.+||+|||++|++++++ .
T Consensus 2 ~~~~~~V~ihplvll~I~dH~~R~~~~~---------------g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~~ 66 (141)
T 4e0q_A 2 SHMSVTISLHPLVIMNISEHWTRFRAQH---------------GEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETV 66 (141)
T ss_dssp ---CEEEEECHHHHHHHHHHHHCC---------------------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEEE
T ss_pred CCCcEEEEEecHHHHHHHHHHhhhcccC---------------CCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCcee
Confidence 4567899999999999999999975430 1257999999999999999999999999987555 6
Q ss_pred ccHHHHHHHHHHHHHhCCCcceEEEEecCCCCCcchHHHHHHHhhhCCCcEEEEEcCCCCCCCCCcceEEEEee
Q 023397 83 LDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESE 156 (283)
Q Consensus 83 iD~~~~~~m~~l~k~V~p~~~iVGWY~tg~~~~~~d~~ih~~~~~~~~~pi~L~~D~~~~~~~~~lpi~~y~~~ 156 (283)
+|.+|+++|++++|+|||++.+||||++|+.++..|+.||++|++++++||+|++||..+ .+++||++||++.
T Consensus 67 ~d~~y~~~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~-~~g~Lp~~ay~sv 139 (141)
T 4e0q_A 67 INKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPLSR-SVDHLPLKLFESL 139 (141)
T ss_dssp ECHHHHHHHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCSCC-CCTTHHHHHHCC-
T ss_pred ecHHHHHHHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCCcc-CCCeEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999974 4568999999975
No 4
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-29 Score=231.41 Aligned_cols=230 Identities=14% Similarity=0.208 Sum_probs=177.8
Q ss_pred CCCceEEEehhhhhhHHHHHHhhhccccCCCCCcccCCCCCCCCCCceEEEEeeEE-eCCEEEEEEeEeeccCCCcc---
Q 023397 6 SSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQ-RGRTVEIFNSFELLYDPSTH--- 81 (283)
Q Consensus 6 ~~~~~V~vHPlVll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~-~~~~veI~nsF~vp~~~~~~--- 81 (283)
....+|.|+|+|+|+|++|+.+. .+..|+|+|||.. +++.++|+|||++|..+++.
T Consensus 22 ~~~~~V~is~lallkm~~Ha~~~--------------------~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~ 81 (306)
T 4b4t_V 22 DTKETVYISSIALLKMLKHGRAG--------------------VPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVE 81 (306)
T ss_dssp SSCCEEEECHHHHHHHHHHTCSC--------------------SSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEE
T ss_pred CCCCEEEEeHHHHHHHHHHhcCC--------------------CCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchh
Confidence 45779999999999999998532 1468999999986 56689999999999976554
Q ss_pred cccHHHHHHHHHHHHHhCCCcceEEEEecCCC----CCcchHHHHHHHhhhCCCcEEEEEcCCCCCCCCCcceEEEEeee
Q 023397 82 SLDRAFLEKKQELYKKVFPHFYILGWYSTGSD----AQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESEL 157 (283)
Q Consensus 82 ~iD~~~~~~m~~l~k~V~p~~~iVGWY~tg~~----~~~~d~~ih~~~~~~~~~pi~L~~D~~~~~~~~~lpi~~y~~~~ 157 (283)
.+|.+|+.+|.++++++++++.+||||++++. ++..|+..|..|+..++++|+|++||..+ .+|+++++||++..
T Consensus 82 ~~d~~y~~~m~~~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t-~~G~~~i~Afr~~~ 160 (306)
T 4b4t_V 82 AVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQS-VKGKVVIDAFRLID 160 (306)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSS-SSCSSCEEEEECCH
T ss_pred cCCHHHHHHHHHHHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcC-CCCceeeeEEEecC
Confidence 48999999999999999999999999999764 67789999999999999999999999864 56899999999742
Q ss_pred cc--cc-----------CC------------ceeeEEEeeeeeecchhhHHHHHHHhccCCCCCCChhhhhhhcHHHHHH
Q 023397 158 HV--IE-----------GI------------PQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHS 212 (283)
Q Consensus 158 ~~--~~-----------g~------------~~~~f~~v~~~i~~~e~ErI~v~~l~~~~~~~~~~~~~~~~~~l~~~~~ 212 (283)
.. .. |. ....|.++++++..++.|+..++.+.+.... ..-....-......
T Consensus 161 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~----~~l~~~~~~~~~~~ 236 (306)
T 4b4t_V 161 TGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQ----SGLKMYDYEEKEES 236 (306)
T ss_dssp HHHHHCCCCCSCC----------------------CEEECSCCCCCSSCTHHHHHHHHC--------------CHHHHHH
T ss_pred ccccccccCcccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccc----cccccCcHHHHHHH
Confidence 11 00 00 1245899999999999999999999875221 11122333456677
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhcCCCCCh-----HHHHHHHH
Q 023397 213 AIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIES-----EKFQDDFL 266 (283)
Q Consensus 213 ai~~L~~~i~~i~~Yl~~V~~G~~~~d~~ilR~i~~l~~~lP~~~~-----~~f~~~~~ 266 (283)
+.+.+.++++.+.+|.+.|.+++...+.++. ...+|++++ +.++..++
T Consensus 237 ~~~~i~~m~~~~~~y~k~v~~e~~~~~~~l~------~~~vgk~dp~~~l~~~~~~l~~ 289 (306)
T 4b4t_V 237 NLAATKSMVKIAEQYSKRIEEEKELTEEELK------TRYVGRQDPKKHLSETADETLE 289 (306)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHHHH------HTCSCSSCCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCHHHHH------hhccCccChHHHHHHHHHHHHH
Confidence 7888999999999999999988665555553 567888877 66666654
No 5
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.21 E-value=1e-10 Score=99.21 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=93.1
Q ss_pred CCceEEEehhhhhhHHHHHHhhhccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEeEeeccCCCcc-c--c
Q 023397 7 SGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTH-S--L 83 (283)
Q Consensus 7 ~~~~V~vHPlVll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~~~~-~--i 83 (283)
.-..|.|-..++..|+.|+.++... +..++|.|+|...++..+|+++|++|.....+ + .
T Consensus 7 ~~~~v~i~~~~l~k~l~hA~~~~~~------------------~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~ 68 (178)
T 2znr_A 7 GLRCVVLPEDLCHKFLQLAESNTVR------------------GIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDME 68 (178)
T ss_dssp SCCCEEEETTHHHHHHHHHHHHHTT------------------TCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEEC
T ss_pred CcEEEEECHHHHHHHHHHHHhCCCC------------------CceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccC
Confidence 3457899999999999999887522 25799999999998899999999999764333 1 3
Q ss_pred cHHHHHHHHHHHHHhCCCcceEEEEecCC----CCCcchHHHHHHHhhhCCCcEEEEEcCCCCCCCCCcceEEEEee
Q 023397 84 DRAFLEKKQELYKKVFPHFYILGWYSTGS----DAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESE 156 (283)
Q Consensus 84 D~~~~~~m~~l~k~V~p~~~iVGWY~tg~----~~~~~d~~ih~~~~~~~~~pi~L~~D~~~~~~~~~lpi~~y~~~ 156 (283)
+.+- .++. ....++.+||||+|.+ .++..|+..|..|+...+..++++++|... .+++|+..
T Consensus 69 ~~~e---~~~~--~~~~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~------~~~afrl~ 134 (178)
T 2znr_A 69 NVEE---LFNV--QDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK------DTGIFRLT 134 (178)
T ss_dssp CHHH---HHHH--HHHHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT------EEEEEEEC
T ss_pred CHHH---HHHH--HHhCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC------cceEEEEE
Confidence 3321 1111 3346899999999974 588889999988988888889999999842 37999864
No 6
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.05 E-value=1.8e-09 Score=93.63 Aligned_cols=118 Identities=11% Similarity=0.133 Sum_probs=89.9
Q ss_pred ceEEEehhhhhhHHHHHHhhhccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEeEeeccCCCcc---cccH
Q 023397 9 LTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTH---SLDR 85 (283)
Q Consensus 9 ~~V~vHPlVll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~~~~---~iD~ 85 (283)
..|.|-.-++-.|+.|...+..+ +..++|.|+|...++..+|+++|..|....++ ..+.
T Consensus 42 r~v~Ipk~ll~kfL~~A~~~tp~------------------~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~ 103 (211)
T 3rzv_A 42 RHVVVPGRLCPQFLQLASANTAR------------------GVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENE 103 (211)
T ss_dssp CCEEEETTHHHHHHHHHHHHHHT------------------TCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCH
T ss_pred EEEEECHHHHHHHHHHHHhCCCC------------------CceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccCh
Confidence 47888888999999998876422 25799999999999999999999888754443 2332
Q ss_pred -HHHHHHHHHHHHhCCCcceEEEEecCC----CCCcchHHHHHHHhhhCCCcEEEEEcCCCCCCCCCcceEEEEee
Q 023397 86 -AFLEKKQELYKKVFPHFYILGWYSTGS----DAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESE 156 (283)
Q Consensus 86 -~~~~~m~~l~k~V~p~~~iVGWY~tg~----~~~~~d~~ih~~~~~~~~~pi~L~~D~~~~~~~~~lpi~~y~~~ 156 (283)
+.++-+.+ .++.+||||++.+ .++..|+..|..|+...+..|++++||... ++.||+..
T Consensus 104 ~e~~~~~~~------~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~------~lgaFrLt 167 (211)
T 3rzv_A 104 EELFLIQDQ------QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ------ETGFFKLT 167 (211)
T ss_dssp HHHHHHHHH------HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT------EEEEEEEC
T ss_pred HHHHHHHhh------CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC------eeeEEEec
Confidence 22211111 4899999999964 588899999988888888889999998731 79999975
No 7
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=98.68 E-value=1e-06 Score=71.95 Aligned_cols=128 Identities=11% Similarity=0.053 Sum_probs=88.5
Q ss_pred EEEehhhhhhHHHHHHhhhccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEeEeeccCCCcc--c-ccHHH
Q 023397 11 FKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTH--S-LDRAF 87 (283)
Q Consensus 11 V~vHPlVll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~~~~--~-iD~~~ 87 (283)
+.+...++..|..|..+.. +..++|.|+|..+++...|+..|++|....+. + +|...
T Consensus 2 l~i~~~~l~~i~~ha~~~~--------------------p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~~f~~dp~~ 61 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQAL--------------------PNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEHFSMDPRE 61 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHT--------------------TSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSSCCCCHHH
T ss_pred EEECHHHHHHHHHHHHhcC--------------------CcceEEEEEEEEcCCCcEEEEEEECCCcCCCCceEEECHHH
Confidence 5678889999999987643 46899999999998889999999999543322 3 77666
Q ss_pred HHHHHHHHHHhCCCcceEEEEecCC----CCCcchHHHHHHHhhhCCCcEEEEEcCCCCCCCCCcceEEEEeeeccccCC
Q 023397 88 LEKKQELYKKVFPHFYILGWYSTGS----DAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGI 163 (283)
Q Consensus 88 ~~~m~~l~k~V~p~~~iVGWY~tg~----~~~~~d~~ih~~~~~~~~~pi~L~~D~~~~~~~~~lpi~~y~~~~~~~~g~ 163 (283)
+.+..+...+ .++.+||||++.+ .++..|.. . +.. ...+++++.+.. .+...+++|.. .+|.
T Consensus 62 ~~~~~~~~~~--~g~~ivG~~HSHP~~~~~PS~~D~~--~--~~~-~~~~~lIvs~~~---~~~~~~~af~~----~~~~ 127 (146)
T 2kks_A 62 QLTAVKDMRK--NGWVMLGNFHSHPATPARPSAEDKR--L--AFD-PSLSYLIISLAE---PQKPVCKSFLI----KKDG 127 (146)
T ss_dssp HHHHHHHHHH--HTCEEEEEEEEESSSCSSCCHHHHT--T--CCS-SSCEEEEEECSC---SSSCEEEEEEE----CSSC
T ss_pred HHHHHHHHHH--CCCEEEEEEeCCCcCCCCCCHHHHH--h--hhc-CCCeEEEEEccC---CCceEEEEEEE----eCCe
Confidence 5555544443 2579999999965 35555542 1 222 344788887652 23457899986 2333
Q ss_pred ceeeEEEeeeeee
Q 023397 164 PQLIFVRSSYTIE 176 (283)
Q Consensus 164 ~~~~f~~v~~~i~ 176 (283)
|.++++.+.
T Consensus 128 ----~~e~~i~~~ 136 (146)
T 2kks_A 128 ----VDEEEIILK 136 (146)
T ss_dssp ----EEEECEEEE
T ss_pred ----EEEEEEEEe
Confidence 888888774
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=98.41 E-value=1.1e-06 Score=72.23 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=84.2
Q ss_pred EEehhhhhhHHHHHHhhhccccCCCCCcccCCCCCCCCCCceEEEEeeEEe-CCEEEEEEeEeeccC--CCc-c-c-ccH
Q 023397 12 KLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQR-GRTVEIFNSFELLYD--PST-H-S-LDR 85 (283)
Q Consensus 12 ~vHPlVll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~-~~~veI~nsF~vp~~--~~~-~-~-iD~ 85 (283)
.|.+.++..|..|..+.. +..++|.|+|..+ ++.+.|+..|++|.. .+. . + +|.
T Consensus 2 ~i~~~~l~~i~~ha~~~~--------------------p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp 61 (153)
T 2kcq_A 2 KTTPDILDQIRVHGADAY--------------------PEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELTA 61 (153)
T ss_dssp BCCHHHHHHHHHHHHHHT--------------------TSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSCCC
T ss_pred EeCHHHHHHHHHHHHhcC--------------------CcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEECH
Confidence 456778899999988753 4679999999997 788899999999875 222 2 2 554
Q ss_pred HHHHHHHHHHHHhCCCcceEEEEecCCC----CCcchHHHHHHHhhhCCCcEEEEEcCCCCCCCCC-cceEEEEeeeccc
Q 023397 86 AFLEKKQELYKKVFPHFYILGWYSTGSD----AQESDMHIHKALMDINESPVYVLLNPSINPAQKD-LPVTIFESELHVI 160 (283)
Q Consensus 86 ~~~~~m~~l~k~V~p~~~iVGWY~tg~~----~~~~d~~ih~~~~~~~~~pi~L~~D~~~~~~~~~-lpi~~y~~~~~~~ 160 (283)
..+.+..+..++. ++.+||||++.+. ++..|.. . + .....+++++.+.. ++ ..+++|+..
T Consensus 62 ~~~~~~~~~~~~~--g~~ivG~yHSHP~~~~~PS~~D~~--~--~-~~~~~~~lIvs~~~----~~~~~~~af~~~---- 126 (153)
T 2kcq_A 62 DDYRAADAAAQEQ--GLDVVGVYHSHPDHPARPSATDLE--E--A-TFPGFTYVIVSVRD----GAPEALTAWALA---- 126 (153)
T ss_dssp CSHHHHHHHHHHH--TCEEEEEEEECSSSSSSCCHHHHH--T--C-CCTTSEEEEEEEET----TEEEEEEEEEEC----
T ss_pred HHHHHHHHHHHHC--CCeEEEEEeCCCCCCCCCCHHHHH--h--h-hcCCCeEEEEECCC----CCccEEEEEEEe----
Confidence 3333333333333 5899999999763 5555642 2 1 22345788887531 22 358899852
Q ss_pred cCCceeeEEEeeeeeec
Q 023397 161 EGIPQLIFVRSSYTIET 177 (283)
Q Consensus 161 ~g~~~~~f~~v~~~i~~ 177 (283)
++ ...|.+.++.|..
T Consensus 127 ~~--~g~~~e~~i~v~~ 141 (153)
T 2kcq_A 127 PD--RSEFHREDIVRPD 141 (153)
T ss_dssp TT--CSCEEEECCBCCC
T ss_pred CC--CCcEEEEEEEEec
Confidence 11 1238888887754
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=97.52 E-value=0.00057 Score=53.81 Aligned_cols=104 Identities=8% Similarity=0.032 Sum_probs=64.8
Q ss_pred EEEehhhhhhHHHHHHhhhccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEeEeeccCCCcccccHHHHHH
Q 023397 11 FKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLEK 90 (283)
Q Consensus 11 V~vHPlVll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~~~~~iD~~~~~~ 90 (283)
+.+...++..|.+|..+.. +..++|.|+|... .|+..|++| ...+. ....|...
T Consensus 4 v~i~~~~l~~i~~ha~~~~--------------------P~E~cGlL~g~~~----~v~~~~~~p-~~~~~-~~~~f~~~ 57 (124)
T 1oi0_A 4 MKISRGLLKTILEAAKSAH--------------------PDEFIALLSGSKD----VMDELIFLP-FVSGS-VSAVIHLD 57 (124)
T ss_dssp CEECHHHHHHHHHHHHHHT--------------------TSCCEEEEEESTT----EECEEEECC-CCC-----------
T ss_pred EEEcHHHHHHHHHHHHhcC--------------------CCeeEEEEecccC----EEEEEEECC-CCCCC-cCceeeee
Confidence 6788889999999998753 4689999999863 788999999 43321 11122222
Q ss_pred HHHHHHHhCCCcceEEEEecCC----CCCcchHHHHHHHhhhCCCcEEEEEcCCCCCCCCCcceEEEEe
Q 023397 91 KQELYKKVFPHFYILGWYSTGS----DAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFES 155 (283)
Q Consensus 91 m~~l~k~V~p~~~iVGWY~tg~----~~~~~d~~ih~~~~~~~~~pi~L~~D~~~~~~~~~lpi~~y~~ 155 (283)
|.. .++.+||||++.+ .++..|... +.. ...+++++.+.. +.-.+++|..
T Consensus 58 ~~~------~~~~ivG~~HSHP~~~~~PS~~D~~~----~~~-~~~~~lIvs~~~----~~~~~~~f~~ 111 (124)
T 1oi0_A 58 MLP------IGMKVFGTVHSHPSPSCRPSEEDLSL----FTR-FGKYHIIVCYPY----DENSWKCYNR 111 (124)
T ss_dssp ---------CCCEEEEEEEEESSSCCSCCHHHHHH----HHH-SCSEEEEEETTC----CTTCEEEEET
T ss_pred ecc------CCCEEEEEEEECcCCCCccCHHHHHh----hhc-CCCEEEEEEccC----CCceEEEEec
Confidence 221 5689999999965 355566432 222 345788887542 2235788873
No 10
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=93.31 E-value=0.25 Score=43.87 Aligned_cols=91 Identities=20% Similarity=0.304 Sum_probs=61.6
Q ss_pred CceEEEEeeEEe---CCEEEEEEeEeeccCCCcccc-------cHHHHHHHHHHHHHhCCCcceEEEEecCC----CCCc
Q 023397 51 PRVYGCVIGIQR---GRTVEIFNSFELLYDPSTHSL-------DRAFLEKKQELYKKVFPHFYILGWYSTGS----DAQE 116 (283)
Q Consensus 51 ~~v~G~LLG~~~---~~~veI~nsF~vp~~~~~~~i-------D~~~~~~m~~l~k~V~p~~~iVGWY~tg~----~~~~ 116 (283)
..++|.|.|.-. .+..||+.---+|...+.+.+ ..+|+ -++..+||=+|.+ .+++
T Consensus 59 Tq~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l-----------~dLe~LGWIHTqp~e~~~LSs 127 (273)
T 2p8r_A 59 TQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL-----------RDFEPLGWMHTQPNELPQLSP 127 (273)
T ss_dssp SCCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT-----------TTSEEEEEEEEESSCCSSCCH
T ss_pred ceEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh-----------ccccccceEeeCCCCCCCcCH
Confidence 579999999973 356778655444543222211 12332 7999999999954 5888
Q ss_pred chHHHHHHHhhh----C-CCcEEEEEcCCCCCCCCCcceEEEEee
Q 023397 117 SDMHIHKALMDI----N-ESPVYVLLNPSINPAQKDLPVTIFESE 156 (283)
Q Consensus 117 ~d~~ih~~~~~~----~-~~pi~L~~D~~~~~~~~~lpi~~y~~~ 156 (283)
.|+..|..|+.. . +..|.+++-+.+ +...+.||+..
T Consensus 128 ~Dl~tH~~~~~~~~~~~~~e~I~Ivcsftp----gs~sl~af~LT 168 (273)
T 2p8r_A 128 QDVTTHAKLLTDNISWDGEKTVMITCSFTP----GSVSLTAYKLT 168 (273)
T ss_dssp HHHHHHHHHHHHCTTCCTTTCEEEEEEEET----TEEEEEEEEEC
T ss_pred HHHHHHHHHHhcccccCCCceEEEEEecCC----CCceeEEEEcC
Confidence 999999888764 2 367888776543 44568899864
No 11
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=90.74 E-value=0.62 Score=40.89 Aligned_cols=93 Identities=13% Similarity=0.158 Sum_probs=61.7
Q ss_pred CceEEEEeeEEe---CCEEEEEEeEeeccCCCcccc-------cHHHHHHHHHHHHHhCCCcceEEEEecCC----CCCc
Q 023397 51 PRVYGCVIGIQR---GRTVEIFNSFELLYDPSTHSL-------DRAFLEKKQELYKKVFPHFYILGWYSTGS----DAQE 116 (283)
Q Consensus 51 ~~v~G~LLG~~~---~~~veI~nsF~vp~~~~~~~i-------D~~~~~~m~~l~k~V~p~~~iVGWY~tg~----~~~~ 116 (283)
..++|.|.|.-. .+..||+.---+|...+.+.+ ..+|.+ --++..+||=+|.+ .+++
T Consensus 58 Tq~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~---------l~dLe~LGWIHTqptq~~fLSs 128 (254)
T 2og4_A 58 IQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD---------TEGLELLGWIHTQTEELKFMAA 128 (254)
T ss_dssp SCCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTT---------CTTCEEEEEEEEESSCCSSCCH
T ss_pred ceEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchh---------hcCCEecceEeeCCCCCcccCH
Confidence 579999999983 356777644444432221111 112211 26899999999963 5888
Q ss_pred chHHHHHHHhh-hCCCcEEEEEcCCCCCCCCCcceEEEEee
Q 023397 117 SDMHIHKALMD-INESPVYVLLNPSINPAQKDLPVTIFESE 156 (283)
Q Consensus 117 ~d~~ih~~~~~-~~~~pi~L~~D~~~~~~~~~lpi~~y~~~ 156 (283)
.|+..|..|+. ..+..|.+++-+.+ +...+.+|+..
T Consensus 129 ~Dl~tH~~~~~~~~~eaIaIvcsftp----gs~sl~af~LT 165 (254)
T 2og4_A 129 SEVATHSKLFADKKRDCIDISIFSTP----GSVSLSAYNLT 165 (254)
T ss_dssp HHHHHHHHHHTTTCTTCEEEEEEEET----TEEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCeEEEEEecCC----CCceeEEEEcC
Confidence 99999988887 44678888886553 44568899864
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=87.07 E-value=1.3 Score=42.53 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=60.8
Q ss_pred CceEEEEeeEEe-C--CEEEEEEeEeeccCCCcccccHHHHHHHHHHHHH---hCCCcceEEEEecCC----CCCcchHH
Q 023397 51 PRVYGCVIGIQR-G--RTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKK---VFPHFYILGWYSTGS----DAQESDMH 120 (283)
Q Consensus 51 ~~v~G~LLG~~~-~--~~veI~nsF~vp~~~~~~~iD~~~~~~m~~l~k~---V~p~~~iVGWY~tg~----~~~~~d~~ 120 (283)
..++|.|.|... + +..||+.---+|.-.+.+.++.. . ...+ + .-.++.++||=+|.+ .+++.|+.
T Consensus 369 TQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp-~---lp~h-e~~~~l~dLe~LGWIHTqp~et~fLSs~Dl~ 443 (565)
T 3sbg_A 369 IQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQIS-N---IPDI-GDLPDTEGLELLGWIHTQTEELKFMAASEVA 443 (565)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEEC-C---CCCC-TTSTTCTTCEEEEEEEEESSCCSSCCHHHHH
T ss_pred ceeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECC-C---CCcc-ccccccccCEecceeeecCCcccccCHHHHH
Confidence 579999999985 2 45677544444443322222111 0 0000 0 126899999999853 58999999
Q ss_pred HHHHHhhhC-CCcEEEEEcCCCCCCCCCcceEEEEee
Q 023397 121 IHKALMDIN-ESPVYVLLNPSINPAQKDLPVTIFESE 156 (283)
Q Consensus 121 ih~~~~~~~-~~pi~L~~D~~~~~~~~~lpi~~y~~~ 156 (283)
.|..+...+ +..|.+.+-.. .|...+.||...
T Consensus 444 THakl~~~n~~~~I~itvsft----PGS~SLsAy~LT 476 (565)
T 3sbg_A 444 THSKLFADKKRDCIDISIFST----PGSVSLSAYNLT 476 (565)
T ss_dssp HHHHHHSSSCTTCEEEEEEEE----TTEEEEEEEEEC
T ss_pred HHHHHHHhCCCCeEEEEEEec----CCceEEEEEecC
Confidence 998887654 35577766554 366789999865
No 13
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=72.06 E-value=8 Score=22.22 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=23.4
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 023397 202 QLAAHLTGIHSAIKMLNSRIRVLHHYLVA 230 (283)
Q Consensus 202 ~~~~~l~~~~~ai~~L~~~i~~i~~Yl~~ 230 (283)
.+..++..+..-+++|++|++++-+-+++
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777888899999999999887764
No 14
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=70.49 E-value=1.6 Score=28.59 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=9.7
Q ss_pred cceEEEEecCCCC
Q 023397 102 FYILGWYSTGSDA 114 (283)
Q Consensus 102 ~~iVGWY~tg~~~ 114 (283)
-.|||||.+.-.+
T Consensus 24 g~ivgwyct~ltp 36 (62)
T 2rh2_A 24 GQIVGWYCTNLTP 36 (62)
T ss_dssp EEEEEEECCSSCS
T ss_pred ceEeEEEEccccc
Confidence 4799999986443
No 15
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=29.46 E-value=72 Score=25.25 Aligned_cols=44 Identities=11% Similarity=0.326 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhcCCCCChHHHHHH
Q 023397 219 SRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDD 264 (283)
Q Consensus 219 ~~i~~i~~Yl~~V~~G~~~~d~~ilR~i~~l~~~lP~~~~~~f~~~ 264 (283)
.-++.|-.+|+-..+|.+| +..|-+.|.+++..+| ++.+.+.+.
T Consensus 61 giL~~l~~WL~PLpDgsLP-~~~Ir~~lL~~L~~lP-I~~e~Lk~S 104 (145)
T 2xpp_A 61 GILDEIKGWLEPLPDKSMP-NIKIRKRLLDVLKTMK-IHKEHLVTS 104 (145)
T ss_dssp THHHHHHHHHSCCTTSCCC-CHHHHHHHHHHHHTSC-CCHHHHHHH
T ss_pred CHHHHHHHHhCcCCCCCCC-CHHHHHHHHHHHHHCC-CCHHHhhcC
Confidence 3457788888888888765 7999999999999999 887777653
No 16
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=26.26 E-value=37 Score=23.21 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHH
Q 023397 208 TGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLL 243 (283)
Q Consensus 208 ~~~~~ai~~L~~~i~~i~~Yl~~V~~G~~~~d~~il 243 (283)
+.+..++.+-+.....+.+|++.+.-.-++.+|.||
T Consensus 26 deL~~~l~eqee~n~~Le~YID~LL~~ImE~~PsiL 61 (64)
T 2hv8_D 26 DELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSIL 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 466677777777778999999987655445566554
No 17
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=22.03 E-value=1.9e+02 Score=25.02 Aligned_cols=49 Identities=12% Similarity=0.379 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcCCCCCChHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 023397 221 IRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMVSLFS 272 (283)
Q Consensus 221 i~~i~~Yl~~V~~G~~~~d~~ilR~i~~l~~~lP~~~~~~f~~~~~~~~lmv 272 (283)
.+.+.+.++.+ +++|+-+.+..+|.++++. |..+.+++.+.+.+|..++
T Consensus 13 ~~~~~~~l~~~--~~lP~~p~~~~~l~~~~~~-~~~~~~~la~~I~~Dp~Ls 61 (305)
T 3hc1_A 13 LTLAREFMSGV--DELPTVPDIVLRIAGKLND-PDVAIDEVADLLLQDQVLT 61 (305)
T ss_dssp HHHHHHHHHTC--SSCCCCCHHHHHHHHHTTC-TTCCHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhh--hhCCCChHHHHHHHHHHcC-CCCCHHHHHHHHHHCHHHH
Confidence 34455556663 3789999999999999876 8889899988888874333
No 18
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=21.55 E-value=1.2e+02 Score=24.66 Aligned_cols=43 Identities=16% Similarity=0.475 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhcCCCCChHHHHH
Q 023397 219 SRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQD 263 (283)
Q Consensus 219 ~~i~~i~~Yl~~V~~G~~~~d~~ilR~i~~l~~~lP~~~~~~f~~ 263 (283)
.-++.|-.+|+-..+|.+| +-.|-+.|.+++..+| ++.+.+..
T Consensus 76 giL~~l~~WLePLpDgSLP-~~~Ir~~lL~~L~~lP-I~~e~Lk~ 118 (170)
T 3nfq_A 76 NLLQSVRIWLEPLPDGSLP-SFEIQKSLFAALNDLP-VKTEHLKE 118 (170)
T ss_dssp THHHHHHHHHSCCTTSCCC-CHHHHHHHHHHHHTSC-CCHHHHHH
T ss_pred chHHHHHHHhCcCCCCCCC-cHHHHHHHHHHHHHCC-CCHHHHhh
Confidence 4456778888888888765 8899999999999999 88777665
Done!