BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023398
(282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3
PE=2 SV=2
Length = 851
Score = 141 bits (355), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 89/127 (70%), Gaps = 1/127 (0%)
Query: 144 LSSVIATPL-WPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLP 202
LS+ TPL WP QD+ FN ND GA A ++D N+ +AP+ L RD + P NM +LP
Sbjct: 663 LSAADTTPLLWPRQDEMIRRFNLNDGGARAQSVSDLNLPRMAPVSLHRDDTAPENMVALP 722
Query: 203 CLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYIN 262
CLKS+TW ME N+ PG RVAVI+LKL DY K PS + +VKFQL+ TLE MLRS+ YI+
Sbjct: 723 CLKSLTWGMESKNTMPGGRVAVINLKLHDYRKFPSADMDVKFQLSSVTLEPMLRSMAYIS 782
Query: 263 EQLSSLA 269
EQLSS A
Sbjct: 783 EQLSSPA 789
>sp|Q8K2Q0|COMD9_MOUSE COMM domain-containing protein 9 OS=Mus musculus GN=Commd9 PE=2
SV=3
Length = 198
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 10/83 (12%)
Query: 196 GNMGSLPCLKSMTWTME-KSNSEPGNRVAV----ISLKLQDYTKSPSGE----TEVKFQL 246
N SLP L + W ++ K++S+ +R+AV + +K+Q+ S GE + V +L
Sbjct: 115 ANQISLPRLVDLDWRVDIKTSSDNISRMAVPTCLLQMKIQE-DPSLCGEKPSISAVTMEL 173
Query: 247 TKDTLEAMLRSLTYINEQLSSLA 269
+K+TL+ ML L I +QLS++A
Sbjct: 174 SKETLDTMLDGLGRIRDQLSAVA 196
>sp|Q2TBN5|COMD9_BOVIN COMM domain-containing protein 9 OS=Bos taurus GN=COMMD9 PE=2 SV=1
Length = 198
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 10/83 (12%)
Query: 197 NMGSLPCLKSMTWTME-KSNSEPGNRVAV----ISLKLQDYTKSPSGE----TEVKFQLT 247
N SLP L + W ++ K++S+ +R+AV + +K+Q+ S G+ ++V +L+
Sbjct: 116 NQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE-DPSLCGDRPSVSDVTVELS 174
Query: 248 KDTLEAMLRSLTYINEQLSSLAA 270
K+TL+ ML L I +QLS++A+
Sbjct: 175 KETLDTMLDGLGRIRDQLSAVAS 197
>sp|Q9P000|COMD9_HUMAN COMM domain-containing protein 9 OS=Homo sapiens GN=COMMD9 PE=1
SV=2
Length = 198
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 10/84 (11%)
Query: 196 GNMGSLPCLKSMTWTME-KSNSEPGNRVAV----ISLKLQDYTKSPSGE----TEVKFQL 246
N SLP L + W ++ K++S+ +R+AV + +K+Q+ S G+ + V +L
Sbjct: 115 ANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE-DPSLCGDKPSISAVTVEL 173
Query: 247 TKDTLEAMLRSLTYINEQLSSLAA 270
+K+TL+ ML L I +QLS++A+
Sbjct: 174 SKETLDTMLDGLGRIRDQLSAVAS 197
>sp|Q12389|DBP10_YEAST ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DBP10 PE=1 SV=2
Length = 995
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 9 TLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASL 68
++ + +L + ++ L+ +L +L +TR+T L SA + SL++ G V+PV+ L
Sbjct: 285 VVFDEADRLFEMGFQEQLNELLASLPTTRQTLLFSA--TLPNSLVDFVKAGLVNPVLVRL 342
Query: 69 RSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQK 107
+ E S++L LF + D ++NL+ +LQ+
Sbjct: 343 DA-------ETKVSENLEMLFLSSKNADREANLLYILQE 374
>sp|A6ZXU0|DBP10_YEAS7 ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae
(strain YJM789) GN=DBP10 PE=3 SV=1
Length = 995
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 9 TLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASL 68
++ + +L + ++ L+ +L +L +TR+T L SA + SL++ G V+PV+ L
Sbjct: 285 VVFDEADRLFEMGFQEQLNELLASLPTTRQTLLFSA--TLPNSLVDFVKAGLVNPVLVRL 342
Query: 69 RSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQK 107
+ E S++L LF + D ++NL+ +LQ+
Sbjct: 343 DA-------ETKVSENLEMLFLSSKNADREANLLYILQE 374
>sp|O33123|LEUC_MYCLE 3-isopropylmalate dehydratase large subunit OS=Mycobacterium leprae
(strain TN) GN=leuC PE=3 SV=1
Length = 476
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 13/149 (8%)
Query: 4 DTGTDTLYLQLHKLSAINSEQALDNI-LTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVD 62
D G D +Y+ LH + + S QA D + L W R+ L A + H +++ P D
Sbjct: 29 DRGPDLIYIDLHLVHEVTSPQAFDGLRLAGRW-VRRPDLTVATEDHNVPTVDIDKP-IAD 86
Query: 63 PVV-ASLRSLIRKC----VRENFTSD---DLLKLFPPDLSLDLQSNLILLLQKHQKQWKE 114
PV + +L R C VR + D ++ + P L L I+ H
Sbjct: 87 PVSRIQVETLRRNCAEFGVRLHPMGDIEQGIVHVVGPQLGLTQPGMTIVCGDSHTSTHGA 146
Query: 115 ESSREQQPLSGTSVSYHVKMSAAPSFRPF 143
+ GTS HV + RPF
Sbjct: 147 FGAIAMG--IGTSEIEHVLATQTLPLRPF 173
>sp|P41241|CSK_MOUSE Tyrosine-protein kinase CSK OS=Mus musculus GN=Csk PE=1 SV=2
Length = 450
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 162 NFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWT 210
NF H DL A ++++ NVA ++ L ++ S + G LP + WT
Sbjct: 309 NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP----VKWT 353
>sp|Q0VBZ0|CSK_BOVIN Tyrosine-protein kinase CSK OS=Bos taurus GN=CSK PE=2 SV=1
Length = 450
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 162 NFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWT 210
NF H DL A ++++ NVA ++ L ++ S + G LP + WT
Sbjct: 309 NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP----VKWT 353
>sp|P32577|CSK_RAT Tyrosine-protein kinase CSK OS=Rattus norvegicus GN=Csk PE=1 SV=1
Length = 450
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 162 NFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWT 210
NF H DL A ++++ NVA ++ L ++ S + G LP + WT
Sbjct: 309 NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP----VKWT 353
>sp|Q1GCK9|MUTS_RUEST DNA mismatch repair protein MutS OS=Ruegeria sp. (strain TM1040)
GN=mutS PE=3 SV=1
Length = 879
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 56/151 (37%), Gaps = 42/151 (27%)
Query: 158 DPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPP---------------------- 195
D F FN ++ A +V+ + +PLL+ PP
Sbjct: 224 DGFGTFNRAEISAMGAVVDYLEITQKGKLPLLQ---PPLQESEDRTVQIDASTRRNLELT 280
Query: 196 -----GNMGSLPCLKSMTWT------MEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKF 244
G GSL + T T +E+ S P + VIS +L+ +T V+
Sbjct: 281 RSLSGGRAGSLLSVVDRTVTPGGARLLEQRLSSPSRNLDVISARLEAL------DTIVED 334
Query: 245 QLTKDTLEAMLRSLTYINEQLSSLAATSSGP 275
+ DTL +LR I+ LS LA GP
Sbjct: 335 PIRCDTLRGLLRKTPDIDRALSRLALDRGGP 365
>sp|P41240|CSK_HUMAN Tyrosine-protein kinase CSK OS=Homo sapiens GN=CSK PE=1 SV=1
Length = 450
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 162 NFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWT 210
NF H DL A ++++ NVA ++ L ++ S + G LP + WT
Sbjct: 309 NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLP----VKWT 353
>sp|P41239|CSK_CHICK Tyrosine-protein kinase CSK OS=Gallus gallus GN=CSK PE=1 SV=1
Length = 450
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 162 NFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWT 210
NF H DL A ++++ N+A ++ L ++ S + G LP + WT
Sbjct: 309 NFVHRDLAARNVLVSEDNIAKVSDFGLTKEASSTQDTGKLP----VKWT 353
>sp|Q9UQQ1|NALDL_HUMAN N-acetylated-alpha-linked acidic dipeptidase-like protein OS=Homo
sapiens GN=NAALADL1 PE=2 SV=2
Length = 740
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 23 EQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPS---PGQVDPVVASLRSLIRKCVR-- 77
++ L +L W ++GL SAE S + LL+ PS P VD +V +I C R
Sbjct: 76 DEDLVQLLLQRWKDPESGLDSAEASTYEVLLSFPSQEQPNVVD-IVGPTGGIIHSCHRTE 134
Query: 78 ENFTSD 83
EN T +
Sbjct: 135 ENVTGE 140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,896,718
Number of Sequences: 539616
Number of extensions: 4104823
Number of successful extensions: 8928
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 8914
Number of HSP's gapped (non-prelim): 34
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)