BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023401
         (282 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P18305|443R_IIV6 Uncharacterized protein 443R OS=Invertebrate iridescent virus 6
           GN=IIV6-443R PE=3 SV=2
          Length = 2432

 Score = 38.9 bits (89), Expect = 0.042,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 110 ITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAV-AGKWLDAV 168
           IT+ +    D VI+ ++  + D GV V    GQ    TA+  DL V  + V  G+ +D+ 
Sbjct: 13  ITVVRGIPGDIVIFGIDGTIADSGVPVSIGSGQAKQPTAVPGDLAVFGSGVNQGQTIDSG 72

Query: 169 LKEDVPRV-LPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAE 215
           L  D   V LP VLW   ++      +     LPL  G M  + ++ +
Sbjct: 73  LTVDDSSVSLPTVLWSSQKIES---LIPTGSFLPLAGGTMTGTIISKD 117


>sp|P0AAJ4|FDNH_SHIFL Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           OS=Shigella flexneri GN=fdnH PE=3 SV=1
          Length = 294

 Score = 32.0 bits (71), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINRHRL 281
           +E   +K   T  +H G  KE++E+AE  VAK  L+    E  GV N +    +   H +
Sbjct: 171 QEPACVKTCPTGAIHFGTKKEMLELAEQRVAK--LKARGYEHAGVYNPE---GVGGTHVM 225

Query: 282 Y 282
           Y
Sbjct: 226 Y 226


>sp|P0AAJ3|FDNH_ECOLI Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           OS=Escherichia coli (strain K12) GN=fdnH PE=1 SV=1
          Length = 294

 Score = 32.0 bits (71), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINRHRL 281
           +E   +K   T  +H G  KE++E+AE  VAK  L+    E  GV N +    +   H +
Sbjct: 171 QEPACVKTCPTGAIHFGTKKEMLELAEQRVAK--LKARGYEHAGVYNPE---GVGGTHVM 225

Query: 282 Y 282
           Y
Sbjct: 226 Y 226


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,627,586
Number of Sequences: 539616
Number of extensions: 3798532
Number of successful extensions: 10074
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10073
Number of HSP's gapped (non-prelim): 4
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)