Query 023401
Match_columns 282
No_of_seqs 51 out of 53
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:45:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0853 Glycosyltransferase [C 99.9 3.4E-23 7.4E-28 205.0 2.6 271 1-280 1-283 (495)
2 cd03807 GT1_WbnK_like This fam 98.5 4.5E-06 9.8E-11 71.6 14.8 177 76-279 1-202 (365)
3 cd03812 GT1_CapH_like This fam 98.2 5.2E-05 1.1E-09 67.2 15.1 177 76-280 1-202 (358)
4 cd03811 GT1_WabH_like This fam 98.2 1.5E-05 3.3E-10 67.6 10.1 136 76-222 1-155 (353)
5 cd03821 GT1_Bme6_like This fam 98.1 0.00013 2.8E-09 62.9 13.5 41 76-116 1-43 (375)
6 cd03805 GT1_ALG2_like This fam 98.1 3.5E-05 7.6E-10 70.1 10.4 130 75-222 1-174 (392)
7 PF13439 Glyco_transf_4: Glyco 97.9 8.2E-06 1.8E-10 64.5 3.8 138 77-227 2-164 (177)
8 cd03823 GT1_ExpE7_like This fa 97.8 0.00032 6.9E-09 60.7 12.1 135 76-221 1-162 (359)
9 cd04951 GT1_WbdM_like This fam 97.8 0.00028 6.1E-09 62.2 11.9 179 76-279 1-197 (360)
10 cd03819 GT1_WavL_like This fam 97.8 0.00028 6E-09 62.5 11.7 170 84-279 7-194 (355)
11 cd03798 GT1_wlbH_like This fam 97.8 0.00029 6.2E-09 60.2 11.3 135 77-220 1-166 (377)
12 TIGR03088 stp2 sugar transfera 97.8 0.00039 8.4E-09 63.4 12.6 79 75-160 2-91 (374)
13 cd03794 GT1_wbuB_like This fam 97.8 8.7E-05 1.9E-09 64.0 7.7 40 76-115 1-42 (394)
14 cd04962 GT1_like_5 This family 97.8 0.00061 1.3E-08 61.1 12.9 175 76-278 2-205 (371)
15 cd03802 GT1_AviGT4_like This f 97.8 8.9E-05 1.9E-09 65.1 7.4 127 75-219 1-148 (335)
16 cd03801 GT1_YqgM_like This fam 97.7 0.00029 6.2E-09 59.7 9.0 137 76-222 1-164 (374)
17 PRK10307 putative glycosyl tra 97.6 0.00054 1.2E-08 64.1 11.0 39 75-113 1-41 (412)
18 cd03817 GT1_UGDG_like This fam 97.6 0.0011 2.3E-08 57.4 12.0 41 76-116 1-43 (374)
19 cd03825 GT1_wcfI_like This fam 97.6 0.0013 2.8E-08 58.1 12.1 81 76-187 2-86 (365)
20 cd03809 GT1_mtfB_like This fam 97.6 0.00024 5.2E-09 62.0 7.3 132 76-222 1-160 (365)
21 cd03792 GT1_Trehalose_phosphor 97.4 0.0047 1E-07 56.9 13.3 105 76-189 1-119 (372)
22 cd04955 GT1_like_6 This family 97.3 0.0066 1.4E-07 53.8 12.7 40 76-115 1-43 (363)
23 cd03822 GT1_ecORF704_like This 97.2 0.0058 1.2E-07 53.4 11.7 40 76-115 1-41 (366)
24 cd03800 GT1_Sucrose_synthase T 97.1 0.0049 1.1E-07 55.5 10.7 39 77-115 9-49 (398)
25 cd03820 GT1_amsD_like This fam 97.1 0.0031 6.7E-08 53.6 8.7 109 76-192 1-120 (348)
26 cd03808 GT1_cap1E_like This fa 96.9 0.011 2.4E-07 50.6 10.6 126 76-221 1-157 (359)
27 cd03795 GT1_like_4 This family 96.9 0.014 3E-07 51.5 11.1 100 76-187 1-116 (357)
28 PF13579 Glyco_trans_4_4: Glyc 96.8 0.003 6.5E-08 49.1 5.6 123 87-228 1-155 (160)
29 TIGR02149 glgA_Coryne glycogen 96.8 0.019 4E-07 52.3 11.3 170 76-279 2-210 (388)
30 cd01635 Glycosyltransferase_GT 96.5 0.02 4.2E-07 46.5 8.3 86 77-190 1-88 (229)
31 cd03814 GT1_like_2 This family 96.4 0.018 3.8E-07 50.2 8.5 40 76-115 1-42 (364)
32 PLN02871 UDP-sulfoquinovose:DA 96.1 0.14 3E-06 49.6 13.7 46 70-115 54-102 (465)
33 PF13477 Glyco_trans_4_2: Glyc 96.0 0.09 2E-06 41.6 10.0 97 76-188 1-110 (139)
34 PRK09922 UDP-D-galactose:(gluc 96.0 0.064 1.4E-06 49.6 10.3 133 75-220 1-151 (359)
35 TIGR03449 mycothiol_MshA UDP-N 95.7 0.13 2.8E-06 47.6 11.2 166 86-280 19-229 (405)
36 PRK13609 diacylglycerol glucos 95.7 0.22 4.8E-06 46.3 12.7 39 73-112 3-41 (380)
37 cd03785 GT1_MurG MurG is an N- 95.5 0.32 6.9E-06 44.0 12.6 31 85-115 8-38 (350)
38 PRK00726 murG undecaprenyldiph 95.5 0.22 4.7E-06 45.7 11.6 38 75-114 2-39 (357)
39 cd03799 GT1_amsK_like This is 95.4 0.45 9.8E-06 41.9 12.9 130 76-220 1-148 (355)
40 cd03791 GT1_Glycogen_synthase_ 95.4 0.52 1.1E-05 45.1 14.2 37 76-112 1-41 (476)
41 cd03796 GT1_PIG-A_like This fa 94.9 0.24 5.3E-06 46.4 10.2 40 76-115 1-42 (398)
42 PRK15484 lipopolysaccharide 1, 94.6 0.9 2E-05 42.9 13.2 157 86-278 20-201 (380)
43 PRK15179 Vi polysaccharide bio 94.6 0.58 1.3E-05 49.4 12.9 63 67-137 276-354 (694)
44 PRK00654 glgA glycogen synthas 94.5 1.2 2.5E-05 43.6 14.0 38 76-113 2-43 (466)
45 cd03816 GT1_ALG1_like This fam 94.1 0.51 1.1E-05 45.2 10.5 125 73-219 2-177 (415)
46 TIGR01133 murG undecaprenyldip 94.0 0.85 1.8E-05 41.2 11.2 38 76-115 2-39 (348)
47 cd03818 GT1_ExpC_like This fam 93.2 0.48 1E-05 44.3 8.4 36 76-116 1-36 (396)
48 PRK10125 putative glycosyl tra 93.0 0.87 1.9E-05 44.1 10.1 42 75-116 1-42 (405)
49 cd01979 Pchlide_reductase_N Pc 92.3 0.8 1.7E-05 44.4 8.9 101 69-188 271-374 (396)
50 TIGR02095 glgA glycogen/starch 92.0 4.5 9.8E-05 39.2 13.7 38 76-113 2-43 (473)
51 TIGR01279 DPOR_bchN light-inde 91.8 0.85 1.8E-05 44.6 8.6 85 69-163 269-356 (407)
52 cd05844 GT1_like_7 Glycosyltra 91.6 3.2 6.9E-05 37.2 11.3 96 80-188 4-116 (367)
53 CHL00073 chlN photochlorophyll 91.5 0.73 1.6E-05 46.6 7.9 82 68-158 308-399 (457)
54 PRK02842 light-independent pro 90.5 1.5 3.1E-05 43.2 8.7 82 68-161 284-371 (427)
55 TIGR03087 stp1 sugar transfera 90.3 0.8 1.7E-05 43.0 6.5 36 77-113 1-39 (397)
56 PRK14099 glycogen synthase; Pr 90.3 5.7 0.00012 39.6 12.8 40 72-111 1-44 (485)
57 PRK02006 murD UDP-N-acetylmura 89.7 1.7 3.8E-05 43.0 8.6 86 72-173 5-98 (498)
58 PRK00421 murC UDP-N-acetylmura 88.8 2.6 5.6E-05 41.3 9.0 86 70-173 3-91 (461)
59 cd03804 GT1_wbaZ_like This fam 87.3 2.2 4.8E-05 38.7 7.0 31 77-108 2-34 (351)
60 PRK01438 murD UDP-N-acetylmura 86.9 2.4 5.2E-05 41.5 7.5 76 72-161 14-89 (480)
61 PF00148 Oxidored_nitro: Nitro 86.9 3.3 7.1E-05 39.4 8.3 111 70-193 267-382 (398)
62 PRK01710 murD UDP-N-acetylmura 86.5 3.9 8.5E-05 40.1 8.8 96 69-182 9-106 (458)
63 PRK00025 lpxB lipid-A-disaccha 86.3 7.8 0.00017 35.8 10.2 34 76-112 3-36 (380)
64 PRK14106 murD UDP-N-acetylmura 86.1 7.6 0.00016 37.5 10.4 85 72-169 3-89 (450)
65 PLN02316 synthase/transferase 86.0 11 0.00024 42.0 12.7 193 75-278 588-848 (1036)
66 TIGR00215 lpxB lipid-A-disacch 85.5 5.7 0.00012 38.2 9.2 30 84-113 12-41 (385)
67 PF04464 Glyphos_transf: CDP-G 84.6 6.8 0.00015 36.7 9.1 172 72-273 11-195 (369)
68 PRK00141 murD UDP-N-acetylmura 84.1 4.9 0.00011 39.8 8.3 92 65-173 6-99 (473)
69 TIGR02472 sucr_P_syn_N sucrose 84.0 18 0.00038 35.0 11.9 27 86-112 25-53 (439)
70 TIGR01283 nifE nitrogenase mol 83.7 6.8 0.00015 38.8 9.0 105 70-193 322-429 (456)
71 PF04007 DUF354: Protein of un 83.6 32 0.0007 33.4 13.4 151 91-274 14-184 (335)
72 cd01974 Nitrogenase_MoFe_beta 83.3 8 0.00017 38.1 9.3 82 69-159 298-386 (435)
73 PRK02472 murD UDP-N-acetylmura 83.0 12 0.00027 36.0 10.3 88 72-173 3-93 (447)
74 cd01965 Nitrogenase_MoFe_beta_ 82.8 5.6 0.00012 38.9 7.9 82 70-160 295-381 (428)
75 PLN02275 transferase, transfer 82.8 13 0.00028 35.0 10.1 40 74-115 5-44 (371)
76 cd01968 Nitrogenase_NifE_I Nit 81.6 12 0.00027 36.3 9.8 82 69-160 282-366 (410)
77 PRK01390 murD UDP-N-acetylmura 81.6 6.3 0.00014 38.4 7.8 73 69-161 4-76 (460)
78 PF00070 Pyr_redox: Pyridine n 81.1 7.7 0.00017 28.7 6.5 58 88-145 6-66 (80)
79 PF13580 SIS_2: SIS domain; PD 81.0 4.1 8.8E-05 33.8 5.5 70 210-280 46-115 (138)
80 PLN02605 monogalactosyldiacylg 80.9 4 8.7E-05 38.6 6.0 109 148-276 98-212 (382)
81 TIGR01286 nifK nitrogenase mol 80.8 9.3 0.0002 39.1 9.0 107 70-189 359-474 (515)
82 TIGR01470 cysG_Nterm siroheme 80.5 7.8 0.00017 34.7 7.5 129 72-224 7-143 (205)
83 PRK13512 coenzyme A disulfide 80.5 3.9 8.5E-05 39.8 6.0 80 74-160 148-239 (438)
84 PF05690 ThiG: Thiazole biosyn 80.3 5.1 0.00011 38.0 6.4 85 77-161 96-208 (247)
85 PF03853 YjeF_N: YjeF-related 80.0 5.6 0.00012 34.3 6.2 80 74-156 25-105 (169)
86 PF13241 NAD_binding_7: Putati 79.0 8.7 0.00019 30.3 6.5 64 72-158 5-68 (103)
87 PRK14478 nitrogenase molybdenu 78.8 6.2 0.00013 39.6 6.9 81 69-159 319-402 (475)
88 PRK10416 signal recognition pa 78.6 18 0.00039 34.7 9.7 87 73-163 113-209 (318)
89 PRK05562 precorrin-2 dehydroge 76.6 13 0.00029 34.3 7.9 71 73-159 24-94 (223)
90 PRK06718 precorrin-2 dehydroge 76.5 13 0.00029 33.1 7.7 71 72-159 8-79 (202)
91 TIGR03499 FlhF flagellar biosy 76.0 26 0.00057 32.6 9.8 90 66-159 185-281 (282)
92 PRK06719 precorrin-2 dehydroge 75.8 12 0.00027 32.0 7.1 67 72-158 11-78 (157)
93 PRK04308 murD UDP-N-acetylmura 75.4 18 0.00039 35.1 8.9 86 72-173 3-92 (445)
94 PRK03369 murD UDP-N-acetylmura 75.1 16 0.00036 36.4 8.7 87 69-173 7-95 (488)
95 PRK06988 putative formyltransf 74.8 19 0.00041 34.3 8.6 76 75-157 3-84 (312)
96 PLN02949 transferase, transfer 74.7 20 0.00043 35.9 9.1 41 76-116 35-78 (463)
97 COG0771 MurD UDP-N-acetylmuram 74.5 18 0.00038 36.8 8.8 89 70-173 4-94 (448)
98 KOG0780 Signal recognition par 73.8 16 0.00034 37.5 8.1 118 67-188 92-224 (483)
99 cd03466 Nitrogenase_NifN_2 Nit 73.5 24 0.00053 34.7 9.3 80 71-159 297-381 (429)
100 COG2022 ThiG Uncharacterized e 73.2 14 0.00031 35.3 7.2 85 77-161 103-215 (262)
101 PF00185 OTCace: Aspartate/orn 72.9 16 0.00034 31.3 7.0 79 73-160 1-83 (158)
102 PF09314 DUF1972: Domain of un 72.9 22 0.00048 31.9 8.2 129 75-222 2-173 (185)
103 PRK14477 bifunctional nitrogen 72.8 21 0.00045 39.1 9.4 104 69-191 315-421 (917)
104 TIGR03590 PseG pseudaminic aci 72.6 80 0.0017 29.1 12.4 82 93-187 20-112 (279)
105 TIGR01081 mpl UDP-N-acetylmura 71.6 17 0.00036 35.6 7.6 73 92-173 11-85 (448)
106 PRK02910 light-independent pro 71.4 21 0.00045 36.3 8.5 79 70-159 289-371 (519)
107 PF13344 Hydrolase_6: Haloacid 71.1 11 0.00025 29.8 5.3 57 94-167 20-76 (101)
108 TIGR00064 ftsY signal recognit 71.0 40 0.00088 31.4 9.7 85 74-162 72-166 (272)
109 TIGR02374 nitri_red_nirB nitri 70.7 9.4 0.0002 40.6 6.1 82 73-161 139-237 (785)
110 PRK13608 diacylglycerol glucos 70.1 1E+02 0.0023 29.4 12.6 136 74-220 5-165 (391)
111 PRK06731 flhF flagellar biosyn 69.5 45 0.00098 31.4 9.8 86 73-162 74-166 (270)
112 TIGR03385 CoA_CoA_reduc CoA-di 69.0 20 0.00042 34.4 7.4 81 73-160 136-231 (427)
113 COG3914 Spy Predicted O-linked 68.4 53 0.0012 35.0 10.8 172 73-277 258-437 (620)
114 PRK04690 murD UDP-N-acetylmura 68.3 28 0.0006 34.6 8.5 91 72-182 6-98 (468)
115 PRK04965 NADH:flavorubredoxin 68.2 15 0.00033 34.6 6.4 82 73-161 140-238 (377)
116 COG0461 PyrE Orotate phosphori 68.2 18 0.00039 33.1 6.7 58 71-139 109-169 (201)
117 KOG1336 Monodehydroascorbate/f 67.2 12 0.00026 38.5 5.8 73 88-160 220-311 (478)
118 PRK06114 short chain dehydroge 67.0 44 0.00094 29.2 8.6 80 72-161 6-97 (254)
119 PRK09564 coenzyme A disulfide 66.7 22 0.00048 34.1 7.2 88 73-167 148-253 (444)
120 cd03806 GT1_ALG11_like This fa 66.6 49 0.0011 32.1 9.6 39 77-115 3-44 (419)
121 PF01380 SIS: SIS domain SIS d 66.3 28 0.00061 27.1 6.7 45 68-116 47-92 (131)
122 PRK13811 orotate phosphoribosy 66.3 23 0.00049 30.8 6.6 59 71-139 101-161 (170)
123 PF09861 DUF2088: Domain of un 66.0 41 0.00089 30.5 8.5 44 73-116 53-102 (204)
124 PF02441 Flavoprotein: Flavopr 66.0 23 0.0005 28.9 6.3 72 75-156 1-79 (129)
125 PF01488 Shikimate_DH: Shikima 65.8 40 0.00086 27.8 7.7 79 72-163 10-88 (135)
126 PRK05579 bifunctional phosphop 65.4 18 0.0004 35.8 6.6 79 71-156 3-88 (399)
127 PRK00771 signal recognition pa 65.1 51 0.0011 33.3 9.7 86 74-163 95-188 (437)
128 TIGR01285 nifN nitrogenase mol 64.8 24 0.00052 35.0 7.3 78 70-166 307-387 (432)
129 PRK14974 cell division protein 64.4 54 0.0012 31.9 9.5 85 74-162 140-234 (336)
130 PRK14573 bifunctional D-alanyl 64.2 36 0.00079 36.2 8.9 84 72-173 2-88 (809)
131 cd00316 Oxidoreductase_nitroge 63.3 36 0.00078 32.2 7.9 82 69-160 274-358 (399)
132 PRK09754 phenylpropionate diox 63.3 31 0.00068 32.9 7.6 81 73-160 143-239 (396)
133 smart00851 MGS MGS-like domain 62.8 22 0.00048 27.2 5.3 55 93-159 2-64 (90)
134 PRK10785 maltodextrin glucosid 62.7 80 0.0017 32.8 10.8 124 93-229 181-336 (598)
135 PRK00455 pyrE orotate phosphor 62.5 31 0.00068 30.4 6.9 58 71-139 110-170 (202)
136 PRK15490 Vi polysaccharide bio 62.4 1.8E+02 0.0039 30.9 13.3 65 68-137 157-234 (578)
137 PRK12726 flagellar biosynthesi 61.4 70 0.0015 32.5 9.8 97 69-169 201-308 (407)
138 PRK05703 flhF flagellar biosyn 61.4 67 0.0015 32.0 9.7 87 71-161 218-310 (424)
139 PRK05557 fabG 3-ketoacyl-(acyl 60.8 57 0.0012 27.5 8.0 36 72-113 3-38 (248)
140 PRK10637 cysG siroheme synthas 60.6 35 0.00076 34.0 7.6 71 72-158 10-80 (457)
141 PF03358 FMN_red: NADPH-depend 60.5 72 0.0016 25.9 8.3 79 76-161 2-81 (152)
142 PRK00745 4-oxalocrotonate taut 60.3 29 0.00063 24.5 5.2 33 238-275 11-43 (62)
143 cd01981 Pchlide_reductase_B Pc 60.1 39 0.00085 33.0 7.8 77 70-159 297-379 (430)
144 PRK08010 pyridine nucleotide-d 60.1 40 0.00087 32.6 7.7 59 74-139 158-219 (441)
145 COG0003 ArsA Predicted ATPase 59.8 12 0.00026 36.3 4.1 185 73-274 29-244 (322)
146 TIGR01278 DPOR_BchB light-inde 59.7 33 0.00071 34.8 7.3 77 70-159 291-373 (511)
147 PF05221 AdoHcyase: S-adenosyl 59.1 24 0.00051 33.9 5.8 78 72-159 41-130 (268)
148 COG2129 Predicted phosphoester 58.9 49 0.0011 31.1 7.7 40 76-115 32-75 (226)
149 TIGR01090 apt adenine phosphor 58.9 18 0.00039 31.0 4.7 34 72-108 107-140 (169)
150 PRK06116 glutathione reductase 58.8 40 0.00086 32.7 7.5 59 74-139 167-228 (450)
151 TIGR00521 coaBC_dfp phosphopan 58.5 26 0.00057 34.7 6.3 41 72-115 1-41 (390)
152 PRK09739 hypothetical protein; 58.4 74 0.0016 27.7 8.5 97 72-169 1-106 (199)
153 PRK04155 chaperone protein Hch 58.1 96 0.0021 29.6 9.7 49 68-116 43-102 (287)
154 PF00156 Pribosyltran: Phospho 58.0 20 0.00043 28.0 4.4 42 67-111 81-122 (125)
155 COG1647 Esterase/lipase [Gener 57.7 72 0.0016 30.4 8.7 101 65-174 5-107 (243)
156 PRK14476 nitrogenase molybdenu 57.3 48 0.001 33.2 8.0 74 70-160 307-381 (455)
157 PRK05249 soluble pyridine nucl 57.2 46 0.00099 32.3 7.6 59 74-139 175-236 (461)
158 PRK05976 dihydrolipoamide dehy 57.2 44 0.00096 32.8 7.6 59 74-139 180-241 (472)
159 PF00532 Peripla_BP_1: Peripla 57.1 1.6E+02 0.0034 27.0 11.6 26 148-173 54-80 (279)
160 PRK07251 pyridine nucleotide-d 57.1 46 0.00099 32.2 7.6 59 74-139 157-218 (438)
161 PRK07313 phosphopantothenoylcy 57.0 25 0.00055 31.1 5.3 62 90-156 14-83 (182)
162 PF02142 MGS: MGS-like domain 56.7 34 0.00073 26.6 5.5 55 93-159 2-69 (95)
163 TIGR00521 coaBC_dfp phosphopan 56.5 27 0.00059 34.6 6.0 59 92-162 213-277 (390)
164 PRK07199 phosphoribosylpyropho 56.5 31 0.00067 32.9 6.2 42 71-115 208-249 (301)
165 PRK13982 bifunctional SbtC-lik 56.4 39 0.00085 34.6 7.3 78 72-156 68-152 (475)
166 PRK13810 orotate phosphoribosy 56.4 45 0.00098 29.7 6.9 58 71-138 119-178 (187)
167 PRK06370 mercuric reductase; V 56.4 47 0.001 32.4 7.6 59 74-139 171-232 (463)
168 PRK10867 signal recognition pa 56.0 93 0.002 31.5 9.7 82 76-161 102-194 (433)
169 PF03033 Glyco_transf_28: Glyc 55.8 28 0.0006 27.5 5.0 37 92-138 14-50 (139)
170 TIGR01082 murC UDP-N-acetylmur 55.7 52 0.0011 32.2 7.8 69 94-173 12-83 (448)
171 TIGR00201 comF comF family pro 55.7 19 0.00041 31.4 4.3 36 71-109 149-184 (190)
172 PRK12827 short chain dehydroge 55.5 1.2E+02 0.0025 25.8 9.0 83 72-161 4-98 (249)
173 PRK00652 lpxK tetraacyldisacch 55.5 2E+02 0.0042 28.0 11.5 83 77-159 51-151 (325)
174 PRK07845 flavoprotein disulfid 55.3 48 0.0011 32.6 7.5 58 75-139 178-238 (466)
175 TIGR01284 alt_nitrog_alph nitr 55.2 47 0.001 33.2 7.5 78 70-160 321-405 (457)
176 PRK10262 thioredoxin reductase 55.2 36 0.00079 31.2 6.3 61 72-139 144-205 (321)
177 TIGR03568 NeuC_NnaA UDP-N-acet 54.7 80 0.0017 30.3 8.7 86 74-159 201-290 (365)
178 PF01075 Glyco_transf_9: Glyco 54.6 28 0.0006 30.4 5.2 87 73-166 103-199 (247)
179 PRK12829 short chain dehydroge 54.6 67 0.0014 27.7 7.5 37 70-112 7-43 (264)
180 cd05014 SIS_Kpsf KpsF-like pro 54.5 41 0.00089 26.5 5.7 40 73-116 47-86 (128)
181 cd01966 Nitrogenase_NifN_1 Nit 54.4 60 0.0013 32.0 8.0 76 69-160 295-370 (417)
182 PLN02507 glutathione reductase 54.3 51 0.0011 33.0 7.6 59 74-139 203-264 (499)
183 PRK02255 putrescine carbamoylt 54.2 79 0.0017 30.8 8.7 78 72-159 152-231 (338)
184 PRK01964 4-oxalocrotonate taut 53.8 36 0.00079 24.5 4.9 33 238-275 11-43 (64)
185 TIGR01744 XPRTase xanthine pho 53.6 43 0.00094 29.9 6.3 58 72-139 115-175 (191)
186 cd01967 Nitrogenase_MoFe_alpha 53.5 1E+02 0.0022 29.7 9.2 81 70-160 282-365 (406)
187 cd01980 Chlide_reductase_Y Chl 53.5 48 0.001 32.6 7.1 65 93-159 292-359 (416)
188 cd03409 Chelatase_Class_II Cla 53.4 73 0.0016 24.1 6.8 56 77-136 2-61 (101)
189 PF02254 TrkA_N: TrkA-N domain 53.3 63 0.0014 24.9 6.5 59 91-158 8-70 (116)
190 TIGR00959 ffh signal recogniti 53.2 1.4E+02 0.0029 30.2 10.3 76 83-160 106-192 (428)
191 TIGR00460 fmt methionyl-tRNA f 52.7 55 0.0012 31.1 7.2 71 88-158 7-86 (313)
192 TIGR02053 MerA mercuric reduct 52.6 53 0.0011 32.0 7.2 59 74-139 166-227 (463)
193 PF14552 Tautomerase_2: Tautom 52.5 29 0.00064 27.2 4.5 34 238-276 39-72 (82)
194 PTZ00058 glutathione reductase 52.5 51 0.0011 34.1 7.4 59 74-139 237-298 (561)
195 PRK06182 short chain dehydroge 52.5 74 0.0016 28.1 7.6 75 72-161 1-85 (273)
196 PRK12939 short chain dehydroge 52.3 82 0.0018 26.9 7.6 79 72-161 5-95 (250)
197 PLN00016 RNA-binding protein; 52.2 93 0.002 29.5 8.6 82 74-158 52-138 (378)
198 TIGR01421 gluta_reduc_1 glutat 52.1 56 0.0012 32.1 7.4 59 74-139 166-227 (450)
199 PRK06416 dihydrolipoamide dehy 52.1 63 0.0014 31.4 7.7 59 74-139 172-233 (462)
200 COG0552 FtsY Signal recognitio 51.8 70 0.0015 31.8 7.9 75 77-159 142-230 (340)
201 PRK05565 fabG 3-ketoacyl-(acyl 51.6 88 0.0019 26.6 7.7 79 73-161 4-94 (247)
202 PRK06194 hypothetical protein; 51.6 99 0.0021 27.4 8.3 79 72-161 4-94 (287)
203 PRK12770 putative glutamate sy 51.5 32 0.0007 32.2 5.4 63 72-142 170-233 (352)
204 PRK13812 orotate phosphoribosy 51.0 55 0.0012 28.7 6.5 58 71-139 104-164 (176)
205 PRK07818 dihydrolipoamide dehy 50.9 67 0.0014 31.5 7.7 59 74-139 172-233 (466)
206 PRK07890 short chain dehydroge 50.8 80 0.0017 27.2 7.4 80 70-160 1-92 (258)
207 TIGR01292 TRX_reduct thioredox 50.8 60 0.0013 28.5 6.7 58 72-139 139-197 (300)
208 TIGR01861 ANFD nitrogenase iro 50.7 72 0.0016 32.8 8.1 103 70-193 324-432 (513)
209 PRK08125 bifunctional UDP-gluc 50.6 58 0.0013 33.7 7.6 69 88-156 7-81 (660)
210 cd01973 Nitrogenase_VFe_beta_l 50.4 86 0.0019 31.5 8.5 109 71-193 302-422 (454)
211 PRK00005 fmt methionyl-tRNA fo 50.4 69 0.0015 30.3 7.4 70 88-157 7-85 (309)
212 PRK06057 short chain dehydroge 50.2 1.2E+02 0.0025 26.5 8.4 37 70-112 3-39 (255)
213 PRK06701 short chain dehydroge 50.2 1.4E+02 0.0031 27.1 9.2 38 69-112 41-78 (290)
214 PRK07806 short chain dehydroge 50.1 1.2E+02 0.0026 26.0 8.4 35 72-112 4-38 (248)
215 PRK00553 ribose-phosphate pyro 50.1 42 0.0009 32.6 6.0 43 71-116 215-257 (332)
216 PRK05749 3-deoxy-D-manno-octul 50.0 2.2E+02 0.0048 27.1 10.9 125 80-219 54-195 (425)
217 PRK02220 4-oxalocrotonate taut 50.0 56 0.0012 23.0 5.3 33 238-275 11-43 (61)
218 PRK11889 flhF flagellar biosyn 50.0 1.3E+02 0.0028 31.0 9.6 84 74-161 241-331 (436)
219 cd06312 PBP1_ABC_sugar_binding 50.0 1.4E+02 0.0031 25.9 8.9 38 76-113 1-39 (271)
220 cd00401 AdoHcyase S-adenosyl-L 49.8 48 0.001 33.3 6.6 78 72-159 34-122 (413)
221 cd01972 Nitrogenase_VnfE_like 49.7 1.4E+02 0.0029 29.4 9.6 108 69-193 288-409 (426)
222 PF02558 ApbA: Ketopantoate re 49.6 11 0.00024 30.5 1.8 58 92-159 9-76 (151)
223 cd00851 MTH1175 This uncharact 49.6 35 0.00076 25.9 4.5 40 94-141 53-92 (103)
224 PRK08063 enoyl-(acyl carrier p 49.5 90 0.002 26.8 7.5 79 72-160 2-92 (250)
225 PRK06327 dihydrolipoamide dehy 49.4 69 0.0015 31.6 7.6 59 74-139 183-244 (475)
226 PRK12560 adenine phosphoribosy 49.4 58 0.0013 28.8 6.4 59 71-138 111-172 (187)
227 PRK14694 putative mercuric red 49.3 74 0.0016 31.2 7.7 59 74-139 178-238 (468)
228 COG0773 MurC UDP-N-acetylmuram 49.3 32 0.00069 35.3 5.3 59 92-161 19-77 (459)
229 PRK12429 3-hydroxybutyrate deh 49.3 1.2E+02 0.0027 25.9 8.3 78 72-160 2-91 (258)
230 TIGR00936 ahcY adenosylhomocys 48.9 55 0.0012 32.8 6.8 78 72-159 30-115 (406)
231 TIGR03169 Nterm_to_SelD pyridi 48.8 57 0.0012 30.3 6.6 81 74-162 145-243 (364)
232 PRK07231 fabG 3-ketoacyl-(acyl 48.7 1E+02 0.0022 26.3 7.7 35 72-112 3-37 (251)
233 PF00919 UPF0004: Uncharacteri 48.6 17 0.00038 29.2 2.7 29 124-160 18-46 (98)
234 cd03820 GT1_amsD_like This fam 48.1 1.7E+02 0.0037 24.8 9.5 99 74-183 178-282 (348)
235 COG0462 PrsA Phosphoribosylpyr 48.1 40 0.00087 33.0 5.6 48 65-115 205-252 (314)
236 PRK09186 flagellin modificatio 47.9 81 0.0017 27.2 7.0 35 71-111 1-35 (256)
237 PRK02261 methylaspartate mutas 47.6 1.7E+02 0.0037 24.7 8.7 42 72-115 1-42 (137)
238 TIGR01087 murD UDP-N-acetylmur 47.4 1E+02 0.0022 29.7 8.3 71 95-173 13-87 (433)
239 cd05017 SIS_PGI_PMI_1 The memb 47.3 81 0.0018 25.1 6.4 46 84-138 50-95 (119)
240 TIGR01425 SRP54_euk signal rec 47.2 1.2E+02 0.0026 30.8 8.9 109 75-188 101-223 (429)
241 TIGR01350 lipoamide_DH dihydro 47.1 79 0.0017 30.6 7.5 59 74-139 170-231 (461)
242 TIGR01316 gltA glutamate synth 47.0 1.4E+02 0.0031 29.3 9.3 82 72-160 131-228 (449)
243 cd00115 LMWPc Substituted upda 46.8 80 0.0017 25.9 6.5 59 120-183 45-105 (141)
244 PRK12742 oxidoreductase; Provi 46.8 1.3E+02 0.0027 25.7 7.9 35 72-112 4-38 (237)
245 TIGR02931 anfK_nitrog Fe-only 46.4 1.5E+02 0.0032 29.8 9.5 85 71-166 309-402 (461)
246 PRK07478 short chain dehydroge 46.3 1.3E+02 0.0027 26.2 8.0 79 72-161 4-94 (254)
247 PRK14805 ornithine carbamoyltr 46.2 1.3E+02 0.0027 28.9 8.5 80 71-159 144-223 (302)
248 cd05008 SIS_GlmS_GlmD_1 SIS (S 46.1 63 0.0014 25.3 5.6 39 73-115 46-84 (126)
249 PF14572 Pribosyl_synth: Phosp 45.7 36 0.00078 30.9 4.6 46 68-116 77-122 (184)
250 PRK14727 putative mercuric red 45.7 81 0.0018 31.2 7.4 59 74-139 188-248 (479)
251 PRK13748 putative mercuric red 45.7 80 0.0017 31.5 7.4 59 74-139 270-330 (561)
252 PRK13809 orotate phosphoribosy 45.5 80 0.0017 28.6 6.8 59 71-139 115-175 (206)
253 PRK06463 fabG 3-ketoacyl-(acyl 45.4 1.6E+02 0.0034 25.7 8.5 76 72-161 5-90 (255)
254 PRK05866 short chain dehydroge 45.4 1.5E+02 0.0033 27.1 8.7 37 71-113 37-73 (293)
255 TIGR01282 nifD nitrogenase mol 45.1 81 0.0018 31.8 7.4 84 69-166 330-418 (466)
256 COG4175 ProV ABC-type proline/ 44.6 5.5 0.00012 39.8 -0.8 24 72-95 213-239 (386)
257 PRK00934 ribose-phosphate pyro 44.4 65 0.0014 30.3 6.2 41 72-115 202-242 (285)
258 TIGR03572 WbuZ glycosyl amidat 44.3 77 0.0017 28.1 6.4 78 92-169 31-117 (232)
259 PRK03515 ornithine carbamoyltr 44.2 1.3E+02 0.0028 29.4 8.4 83 72-161 154-236 (336)
260 PRK03803 murD UDP-N-acetylmura 44.1 1.2E+02 0.0025 29.7 8.1 71 94-173 19-93 (448)
261 PRK12744 short chain dehydroge 44.1 2.2E+02 0.0047 24.8 9.2 82 72-160 6-99 (257)
262 TIGR01134 purF amidophosphorib 44.0 1.1E+02 0.0024 30.7 8.1 79 72-159 336-418 (442)
263 PF05368 NmrA: NmrA-like famil 43.8 71 0.0015 27.7 6.0 73 94-173 12-95 (233)
264 TIGR01424 gluta_reduc_2 glutat 43.8 97 0.0021 30.2 7.6 80 74-160 166-261 (446)
265 PRK13394 3-hydroxybutyrate deh 43.8 1.6E+02 0.0036 25.3 8.3 78 72-160 5-94 (262)
266 PLN02546 glutathione reductase 43.3 87 0.0019 32.3 7.4 60 73-139 251-313 (558)
267 PRK07666 fabG 3-ketoacyl-(acyl 43.3 1E+02 0.0022 26.4 6.8 35 72-112 5-39 (239)
268 cd01977 Nitrogenase_VFe_alpha 43.3 81 0.0018 30.9 6.9 79 70-160 284-368 (415)
269 PF02844 GARS_N: Phosphoribosy 43.0 34 0.00073 28.1 3.6 41 93-138 51-91 (100)
270 PRK05653 fabG 3-ketoacyl-(acyl 43.0 1.3E+02 0.0029 25.3 7.4 78 72-160 3-92 (246)
271 PTZ00052 thioredoxin reductase 42.9 91 0.002 31.2 7.4 52 88-139 189-242 (499)
272 PF09848 DUF2075: Uncharacteri 42.8 1.2E+02 0.0025 28.9 7.8 40 75-115 1-42 (352)
273 PRK01021 lpxB lipid-A-disaccha 42.7 1.3E+02 0.0027 32.2 8.6 161 76-276 228-419 (608)
274 PRK12748 3-ketoacyl-(acyl-carr 42.7 1.9E+02 0.004 25.2 8.5 37 72-112 3-39 (256)
275 TIGR02932 vnfK_nitrog V-contai 42.6 2.5E+02 0.0054 28.4 10.3 108 71-193 306-425 (457)
276 PRK12828 short chain dehydroge 42.4 1.3E+02 0.0028 25.3 7.2 78 72-160 5-92 (239)
277 PRK14989 nitrite reductase sub 42.3 49 0.0011 35.9 5.7 82 73-161 144-244 (847)
278 cd01976 Nitrogenase_MoFe_alpha 42.3 80 0.0017 31.2 6.8 83 69-165 295-382 (421)
279 PRK07097 gluconate 5-dehydroge 42.2 1.4E+02 0.003 26.3 7.6 79 72-161 8-98 (265)
280 cd06302 PBP1_LsrB_Quorum_Sensi 42.1 1.8E+02 0.004 26.0 8.6 32 148-184 54-88 (298)
281 PRK05647 purN phosphoribosylgl 42.1 1.8E+02 0.004 26.0 8.5 70 75-156 3-86 (200)
282 PF02579 Nitro_FeMo-Co: Dinitr 41.9 38 0.00082 25.3 3.5 37 95-139 44-80 (94)
283 PF07905 PucR: Purine cataboli 41.9 1.5E+02 0.0032 24.2 7.2 80 64-145 32-111 (123)
284 CHL00076 chlB photochlorophyll 41.8 1.3E+02 0.0028 30.8 8.3 83 70-166 301-388 (513)
285 PRK09134 short chain dehydroge 41.7 1.9E+02 0.0041 25.2 8.4 65 92-160 21-97 (258)
286 PRK04284 ornithine carbamoyltr 41.7 1.6E+02 0.0036 28.6 8.7 82 72-160 153-234 (332)
287 PRK08416 7-alpha-hydroxysteroi 41.7 85 0.0019 27.6 6.3 39 69-113 3-41 (260)
288 PRK12723 flagellar biosynthesi 41.6 1.8E+02 0.0039 29.0 9.1 85 73-161 173-265 (388)
289 PRK02269 ribose-phosphate pyro 41.3 69 0.0015 30.8 6.0 43 71-116 214-256 (320)
290 TIGR00682 lpxK tetraacyldisacc 41.2 1.2E+02 0.0027 29.1 7.7 84 77-160 30-131 (311)
291 TIGR01832 kduD 2-deoxy-D-gluco 41.1 1.6E+02 0.0034 25.3 7.7 77 72-161 3-91 (248)
292 PRK06292 dihydrolipoamide dehy 41.0 93 0.002 30.2 6.9 58 74-139 169-229 (460)
293 PRK00779 ornithine carbamoyltr 40.8 1.5E+02 0.0033 28.3 8.2 78 71-159 149-226 (304)
294 PRK13530 arsenate reductase; P 40.7 52 0.0011 27.4 4.5 79 72-158 1-82 (133)
295 PRK09162 hypoxanthine-guanine 40.6 52 0.0011 28.8 4.7 38 71-111 94-132 (181)
296 PRK07424 bifunctional sterol d 40.5 1.5E+02 0.0032 29.6 8.3 76 72-161 176-256 (406)
297 PRK12743 oxidoreductase; Provi 40.5 1.5E+02 0.0033 25.8 7.6 77 74-160 2-90 (256)
298 cd03784 GT1_Gtf_like This fami 40.4 83 0.0018 29.4 6.3 36 76-113 2-37 (401)
299 PRK06115 dihydrolipoamide dehy 40.4 1.2E+02 0.0026 29.9 7.7 59 74-139 174-235 (466)
300 cd06350 PBP1_GPCR_family_C_lik 40.4 2.6E+02 0.0057 25.2 9.4 90 94-187 149-252 (348)
301 PRK08278 short chain dehydroge 40.4 2.5E+02 0.0055 25.0 9.1 82 72-160 4-100 (273)
302 PRK12938 acetyacetyl-CoA reduc 40.3 1.7E+02 0.0037 25.1 7.8 80 72-161 1-92 (246)
303 PRK08213 gluconate 5-dehydroge 39.9 1.6E+02 0.0036 25.5 7.7 36 71-112 9-44 (259)
304 PTZ00318 NADH dehydrogenase-li 39.9 83 0.0018 30.5 6.4 79 75-160 174-278 (424)
305 PRK05500 bifunctional orotidin 39.8 90 0.002 32.1 6.8 59 70-139 389-450 (477)
306 PRK05476 S-adenosyl-L-homocyst 39.7 71 0.0015 32.3 6.0 103 72-188 46-157 (425)
307 TIGR01862 N2-ase-Ialpha nitrog 39.6 1.2E+02 0.0027 30.1 7.7 80 69-160 312-397 (443)
308 cd01971 Nitrogenase_VnfN_like 39.5 1.6E+02 0.0035 29.0 8.4 79 73-159 292-380 (427)
309 PRK14804 ornithine carbamoyltr 39.5 1.7E+02 0.0036 28.2 8.3 78 72-161 151-229 (311)
310 cd00491 4Oxalocrotonate_Tautom 39.5 78 0.0017 21.8 4.6 34 238-276 10-43 (58)
311 PRK06031 phosphoribosyltransfe 39.4 58 0.0013 30.1 5.0 36 70-108 150-185 (233)
312 PRK07200 aspartate/ornithine c 39.3 2.3E+02 0.0049 28.5 9.4 88 72-161 185-273 (395)
313 PRK12935 acetoacetyl-CoA reduc 39.3 1.4E+02 0.003 25.6 7.1 79 72-160 4-94 (247)
314 cd03786 GT1_UDP-GlcNAc_2-Epime 39.2 3E+02 0.0065 25.0 13.3 25 91-115 13-39 (363)
315 cd05126 Mth938 Mth938 domain. 39.2 1.5E+02 0.0032 24.7 6.9 74 87-185 42-116 (117)
316 cd01423 MGS_CPS_I_III Methylgl 39.1 1E+02 0.0022 24.6 5.8 54 92-157 14-78 (116)
317 PRK06912 acoL dihydrolipoamide 39.1 1.2E+02 0.0025 29.8 7.3 58 75-139 171-231 (458)
318 PRK10886 DnaA initiator-associ 38.8 79 0.0017 28.4 5.6 40 73-116 109-148 (196)
319 COG0223 Fmt Methionyl-tRNA for 38.6 1.1E+02 0.0025 29.7 7.1 77 88-166 8-93 (307)
320 PRK06172 short chain dehydroge 38.6 1.9E+02 0.0041 25.0 7.9 79 72-161 5-95 (253)
321 PRK04923 ribose-phosphate pyro 38.4 88 0.0019 30.2 6.2 43 71-116 214-256 (319)
322 COG1648 CysG Siroheme synthase 38.4 1.5E+02 0.0032 27.0 7.4 82 72-169 10-94 (210)
323 TIGR00658 orni_carb_tr ornithi 38.3 2.3E+02 0.005 27.0 9.0 79 72-158 146-224 (304)
324 PRK08525 amidophosphoribosyltr 38.3 71 0.0015 32.1 5.8 83 70-159 336-420 (445)
325 PF03807 F420_oxidored: NADP o 38.3 76 0.0017 23.7 4.8 57 92-158 10-69 (96)
326 TIGR00336 pyrE orotate phospho 38.3 62 0.0014 27.9 4.8 58 71-138 105-166 (173)
327 PRK08305 spoVFB dipicolinate s 38.3 40 0.00086 30.7 3.7 39 72-115 3-44 (196)
328 cd00562 NifX_NifB This CD repr 37.9 71 0.0015 24.1 4.5 39 95-141 52-90 (102)
329 cd05013 SIS_RpiR RpiR-like pro 37.9 57 0.0012 25.2 4.1 38 74-115 61-98 (139)
330 TIGR01125 MiaB-like tRNA modif 37.8 48 0.001 32.5 4.4 27 124-158 18-44 (430)
331 PRK07322 adenine phosphoribosy 37.8 65 0.0014 28.1 4.9 33 72-107 118-150 (178)
332 TIGR01316 gltA glutamate synth 37.7 80 0.0017 31.1 6.0 62 72-141 270-331 (449)
333 PRK07814 short chain dehydroge 37.7 1.7E+02 0.0038 25.7 7.6 78 72-160 8-97 (263)
334 PRK13566 anthranilate synthase 37.6 96 0.0021 33.4 6.9 34 73-112 525-558 (720)
335 TIGR00013 taut 4-oxalocrotonat 37.5 85 0.0018 22.1 4.6 33 238-275 11-43 (63)
336 PRK07831 short chain dehydroge 37.5 2E+02 0.0043 25.1 7.9 41 66-111 9-49 (262)
337 PRK07523 gluconate 5-dehydroge 37.4 1.9E+02 0.004 25.1 7.6 78 72-160 8-97 (255)
338 PRK01906 tetraacyldisaccharide 37.3 1.7E+02 0.0037 28.6 8.1 63 77-139 58-133 (338)
339 COG4016 Uncharacterized protei 37.3 44 0.00096 29.8 3.7 74 184-266 19-100 (165)
340 PRK09620 hypothetical protein; 37.3 37 0.0008 31.1 3.4 19 94-112 33-51 (229)
341 PRK09814 beta-1,6-galactofuran 37.2 3.5E+02 0.0075 25.2 10.6 110 86-220 14-141 (333)
342 PRK02277 orotate phosphoribosy 37.1 65 0.0014 28.6 4.8 35 71-108 137-171 (200)
343 PF01008 IF-2B: Initiation fac 37.0 2.1E+02 0.0045 26.2 8.2 63 67-138 100-163 (282)
344 PRK13886 conjugal transfer pro 37.0 2.4E+02 0.0052 26.4 8.7 106 76-188 3-125 (241)
345 PRK12809 putative oxidoreducta 37.0 2E+02 0.0043 29.9 8.9 81 73-160 309-405 (639)
346 TIGR02026 BchE magnesium-proto 36.6 1E+02 0.0022 31.1 6.6 25 89-113 21-46 (497)
347 PRK09219 xanthine phosphoribos 36.6 1.2E+02 0.0026 27.1 6.4 59 72-139 115-175 (189)
348 PF02635 DrsE: DsrE/DsrF-like 36.5 1.8E+02 0.004 22.0 6.7 65 75-139 1-81 (122)
349 TIGR01860 VNFD nitrogenase van 36.5 2.4E+02 0.0053 28.4 9.2 102 70-193 323-431 (461)
350 PRK08862 short chain dehydroge 36.5 2E+02 0.0043 25.3 7.8 77 72-159 3-92 (227)
351 cd00532 MGS-like MGS-like doma 36.4 1.1E+02 0.0025 24.4 5.7 66 77-158 2-76 (112)
352 PRK07060 short chain dehydroge 36.2 2.5E+02 0.0053 23.9 8.1 34 72-111 7-40 (245)
353 PRK07035 short chain dehydroge 35.9 2.1E+02 0.0045 24.7 7.7 78 72-160 6-95 (252)
354 TIGR01438 TGR thioredoxin and 35.9 1.2E+02 0.0026 30.3 7.0 52 88-139 187-240 (484)
355 PRK06027 purU formyltetrahydro 35.8 2E+02 0.0042 27.3 8.0 69 75-157 91-172 (286)
356 PRK07533 enoyl-(acyl carrier p 35.8 1.9E+02 0.004 25.6 7.5 36 69-111 5-43 (258)
357 PTZ00075 Adenosylhomocysteinas 35.7 96 0.0021 32.0 6.3 84 72-165 43-139 (476)
358 PRK02102 ornithine carbamoyltr 35.6 2.5E+02 0.0053 27.5 8.8 82 71-159 152-233 (331)
359 cd04732 HisA HisA. Phosphorib 35.6 1.2E+02 0.0027 26.5 6.3 80 87-169 28-116 (234)
360 PRK12826 3-ketoacyl-(acyl-carr 35.5 2.2E+02 0.0047 24.2 7.7 79 72-161 4-94 (251)
361 TIGR03568 NeuC_NnaA UDP-N-acet 35.5 4.1E+02 0.0089 25.5 14.7 157 91-276 14-208 (365)
362 PRK06198 short chain dehydroge 35.4 1.9E+02 0.0041 25.0 7.4 81 71-161 3-95 (260)
363 PLN02494 adenosylhomocysteinas 35.4 99 0.0022 32.0 6.4 78 72-159 44-133 (477)
364 TIGR03316 ygeW probable carbam 35.4 2.9E+02 0.0063 27.3 9.4 86 72-160 168-255 (357)
365 TIGR02195 heptsyl_trn_II lipop 35.3 90 0.002 28.8 5.6 80 74-160 173-261 (334)
366 PF02606 LpxK: Tetraacyldisacc 35.2 1.7E+02 0.0037 28.3 7.6 86 77-162 37-140 (326)
367 PF02302 PTS_IIB: PTS system, 35.2 70 0.0015 23.9 4.1 51 112-162 6-59 (90)
368 cd04731 HisF The cyclase subun 35.1 1.2E+02 0.0027 27.0 6.3 78 92-169 28-114 (243)
369 PRK12746 short chain dehydroge 35.1 1.9E+02 0.0041 24.9 7.3 36 72-113 4-39 (254)
370 PF01936 NYN: NYN domain; Int 35.0 43 0.00093 26.6 3.1 18 94-111 109-126 (146)
371 PRK12562 ornithine carbamoyltr 34.9 2.6E+02 0.0057 27.3 8.9 83 72-161 154-236 (334)
372 cd06316 PBP1_ABC_sugar_binding 34.7 3E+02 0.0065 24.3 8.6 35 77-111 2-36 (294)
373 cd01521 RHOD_PspE2 Member of t 34.6 1.4E+02 0.0031 23.2 5.9 35 72-110 62-96 (110)
374 PRK08628 short chain dehydroge 34.5 2.3E+02 0.005 24.5 7.8 77 72-160 5-93 (258)
375 KOG4584 Uncharacterized conser 34.5 1.3E+02 0.0029 29.9 6.7 55 76-131 200-254 (348)
376 PF02878 PGM_PMM_I: Phosphoglu 34.3 74 0.0016 26.1 4.4 36 75-111 40-75 (137)
377 PF07429 Glyco_transf_56: 4-al 34.2 98 0.0021 31.0 5.9 89 70-159 180-274 (360)
378 PRK01713 ornithine carbamoyltr 34.0 2.3E+02 0.0049 27.6 8.3 81 72-159 154-234 (334)
379 PRK03806 murD UDP-N-acetylmura 33.9 2.3E+02 0.005 27.4 8.4 83 73-172 5-89 (438)
380 PRK12747 short chain dehydroge 33.9 1.9E+02 0.0042 25.0 7.2 37 71-113 1-37 (252)
381 PLN02256 arogenate dehydrogena 33.8 1.2E+02 0.0025 28.9 6.2 69 72-160 34-102 (304)
382 cd01422 MGS Methylglyoxal synt 33.6 1.7E+02 0.0038 23.8 6.4 67 76-159 1-78 (115)
383 PRK11595 DNA utilization prote 33.2 69 0.0015 28.9 4.4 34 72-108 185-218 (227)
384 PRK10669 putative cation:proto 33.0 88 0.0019 31.7 5.6 58 92-158 428-489 (558)
385 PF13844 Glyco_transf_41: Glyc 32.9 27 0.00058 35.8 1.9 21 260-280 275-295 (468)
386 PRK12937 short chain dehydroge 32.9 2.2E+02 0.0048 24.2 7.3 79 73-161 4-94 (245)
387 TIGR01251 ribP_PPkin ribose-ph 32.8 1.1E+02 0.0023 29.1 5.8 43 70-115 206-248 (308)
388 PRK02304 adenine phosphoribosy 32.8 94 0.002 26.7 5.0 35 71-108 111-145 (175)
389 COG4594 FecB ABC-type Fe3+-cit 32.7 5E+02 0.011 25.6 10.5 88 94-193 57-147 (310)
390 PRK14192 bifunctional 5,10-met 32.6 92 0.002 29.6 5.3 38 122-159 172-211 (283)
391 PRK02289 4-oxalocrotonate taut 32.6 1.2E+02 0.0026 21.7 4.8 33 238-275 11-43 (60)
392 PRK07774 short chain dehydroge 32.6 3.2E+02 0.0068 23.4 8.2 35 72-112 4-38 (250)
393 TIGR01133 murG undecaprenyldip 32.5 3.2E+02 0.007 24.6 8.6 78 75-158 180-258 (348)
394 cd03819 GT1_WavL_like This fam 32.5 3.5E+02 0.0077 23.9 9.4 81 77-158 188-271 (355)
395 PRK07109 short chain dehydroge 32.5 2.2E+02 0.0047 26.7 7.7 78 72-160 6-95 (334)
396 cd03789 GT1_LPS_heptosyltransf 32.4 1.2E+02 0.0025 27.3 5.7 79 75-160 121-209 (279)
397 COG0287 TyrA Prephenate dehydr 32.4 1.2E+02 0.0026 28.7 6.0 78 74-168 3-84 (279)
398 COG0859 RfaF ADP-heptose:LPS h 32.4 1.8E+02 0.0038 27.5 7.1 87 75-168 175-269 (334)
399 PRK13984 putative oxidoreducta 32.4 3E+02 0.0066 28.1 9.3 83 72-161 281-379 (604)
400 cd04728 ThiG Thiazole synthase 32.1 2.2E+02 0.0047 27.2 7.6 86 77-162 96-209 (248)
401 PRK14477 bifunctional nitrogen 32.1 1.9E+02 0.0041 31.9 8.2 75 70-160 783-857 (917)
402 PRK10422 lipopolysaccharide co 32.1 1.1E+02 0.0024 28.7 5.7 84 75-163 183-275 (352)
403 PF04127 DFP: DNA / pantothena 32.1 1.4E+02 0.0031 26.5 6.2 57 94-162 33-94 (185)
404 PRK12775 putative trifunctiona 31.8 2.8E+02 0.006 30.9 9.5 81 73-160 429-527 (1006)
405 PF02310 B12-binding: B12 bind 31.6 2.2E+02 0.0047 22.0 6.5 31 82-112 6-36 (121)
406 CHL00162 thiG thiamin biosynth 31.4 1.7E+02 0.0037 28.3 6.8 85 77-161 110-222 (267)
407 PRK12823 benD 1,6-dihydroxycyc 31.4 3.3E+02 0.007 23.6 8.2 76 72-159 6-93 (260)
408 PRK12825 fabG 3-ketoacyl-(acyl 31.4 2.5E+02 0.0054 23.6 7.3 36 72-113 4-39 (249)
409 COG1433 Uncharacterized conser 31.1 85 0.0018 26.6 4.3 39 95-141 56-94 (121)
410 TIGR02622 CDP_4_6_dhtase CDP-g 31.0 97 0.0021 28.7 5.1 37 71-113 1-37 (349)
411 PRK08264 short chain dehydroge 30.9 2.2E+02 0.0048 24.2 7.0 34 72-111 4-38 (238)
412 PRK09526 lacI lac repressor; R 30.9 4E+02 0.0087 24.0 9.7 40 73-112 62-101 (342)
413 cd01078 NAD_bind_H4MPT_DH NADP 30.9 1.6E+02 0.0034 25.3 6.1 79 72-161 26-108 (194)
414 TIGR01426 MGT glycosyltransfer 30.8 78 0.0017 29.8 4.5 36 93-138 12-47 (392)
415 cd01424 MGS_CPS_II Methylglyox 30.8 1.4E+02 0.003 23.5 5.3 66 77-158 3-75 (110)
416 PRK05717 oxidoreductase; Valid 30.8 3.5E+02 0.0075 23.5 8.3 36 70-111 6-41 (255)
417 cd06296 PBP1_CatR_like Ligand- 30.6 2.6E+02 0.0057 23.9 7.4 31 148-183 53-84 (270)
418 cd03115 SRP The signal recogni 30.6 3.1E+02 0.0068 22.7 7.7 76 85-162 9-94 (173)
419 COG4126 Hydantoin racemase [Am 30.5 67 0.0015 30.4 3.9 43 90-139 160-203 (230)
420 PRK06841 short chain dehydroge 30.4 3.3E+02 0.0073 23.4 8.1 34 72-111 13-46 (255)
421 COG0446 HcaD Uncharacterized N 30.4 1.3E+02 0.0029 27.4 5.8 75 88-162 143-237 (415)
422 PLN02891 IMP cyclohydrolase 30.3 1.1E+02 0.0023 32.4 5.7 49 74-139 21-69 (547)
423 cd02037 MRP-like MRP (Multiple 30.1 2.3E+02 0.005 23.5 6.8 34 78-111 2-35 (169)
424 cd01065 NAD_bind_Shikimate_DH 30.1 2.9E+02 0.0063 22.2 7.8 76 72-162 17-93 (155)
425 PRK05854 short chain dehydroge 30.0 1.8E+02 0.004 26.8 6.7 36 70-111 10-45 (313)
426 PRK13010 purU formyltetrahydro 29.9 2.3E+02 0.0051 27.0 7.6 69 75-157 95-176 (289)
427 PLN02342 ornithine carbamoyltr 29.9 2.6E+02 0.0056 27.6 8.0 75 72-160 192-269 (348)
428 cd06346 PBP1_ABC_ligand_bindin 29.9 3.2E+02 0.007 24.6 8.2 78 95-172 127-216 (312)
429 TIGR01372 soxA sarcosine oxida 29.8 1.4E+02 0.003 32.9 6.8 56 73-139 316-371 (985)
430 cd02038 FleN-like FleN is a me 29.8 2.1E+02 0.0046 23.4 6.4 37 77-113 1-37 (139)
431 TIGR03206 benzo_BadH 2-hydroxy 29.7 3E+02 0.0066 23.4 7.6 34 72-111 1-34 (250)
432 cd08171 GlyDH-like2 Glycerol d 29.5 1.2E+02 0.0025 29.0 5.5 84 74-160 22-112 (345)
433 TIGR01675 plant-AP plant acid 29.4 72 0.0016 29.7 3.9 41 92-136 124-164 (229)
434 PF02153 PDH: Prephenate dehyd 29.2 57 0.0012 29.8 3.2 64 96-169 1-66 (258)
435 PRK06550 fabG 3-ketoacyl-(acyl 29.2 1E+02 0.0023 26.2 4.6 36 71-112 2-37 (235)
436 TIGR03140 AhpF alkyl hydropero 29.0 1.8E+02 0.0038 29.3 6.9 58 72-139 350-408 (515)
437 PRK05872 short chain dehydroge 29.0 2.9E+02 0.0063 25.1 7.7 34 72-111 7-40 (296)
438 PRK05234 mgsA methylglyoxal sy 28.6 2.3E+02 0.0049 24.3 6.6 66 75-156 5-81 (142)
439 PRK04523 N-acetylornithine car 28.5 3.3E+02 0.0071 26.5 8.4 84 73-161 168-255 (335)
440 cd03786 GT1_UDP-GlcNAc_2-Epime 28.5 2.2E+02 0.0048 25.9 6.9 80 74-159 198-286 (363)
441 TIGR00670 asp_carb_tr aspartat 28.3 3.3E+02 0.0072 26.1 8.3 76 72-158 148-224 (301)
442 PRK08085 gluconate 5-dehydroge 28.2 3.2E+02 0.007 23.6 7.6 78 72-160 7-96 (254)
443 cd06315 PBP1_ABC_sugar_binding 28.2 4.2E+02 0.0091 23.4 9.1 37 76-112 2-38 (280)
444 PRK15317 alkyl hydroperoxide r 28.1 1.9E+02 0.004 29.1 6.8 59 71-139 348-407 (517)
445 PRK08643 acetoin reductase; Va 28.1 3.9E+02 0.0085 23.0 8.4 76 74-160 2-89 (256)
446 PRK05920 aromatic acid decarbo 28.1 86 0.0019 28.6 4.1 40 73-115 2-41 (204)
447 cd05710 SIS_1 A subgroup of th 28.0 1E+02 0.0022 24.7 4.2 39 74-116 48-86 (120)
448 PRK05479 ketol-acid reductoiso 27.9 3.1E+02 0.0067 26.9 8.1 95 68-186 11-109 (330)
449 PRK08936 glucose-1-dehydrogena 27.8 3.3E+02 0.0071 23.7 7.6 79 72-160 5-95 (261)
450 PF13460 NAD_binding_10: NADH( 27.8 1.8E+02 0.0039 23.8 5.7 57 92-159 10-69 (183)
451 PRK08558 adenine phosphoribosy 27.8 2.2E+02 0.0048 26.3 6.8 35 71-108 173-207 (238)
452 PF02350 Epimerase_2: UDP-N-ac 27.7 1.1E+02 0.0024 29.4 5.0 84 72-159 178-267 (346)
453 PRK02705 murD UDP-N-acetylmura 27.6 3E+02 0.0065 26.7 8.0 83 76-169 2-89 (459)
454 PRK12481 2-deoxy-D-gluconate 3 27.5 3.1E+02 0.0067 24.0 7.5 76 72-160 6-93 (251)
455 PF10087 DUF2325: Uncharacteri 27.4 1.9E+02 0.0041 22.5 5.5 19 147-165 45-63 (97)
456 COG1737 RpiR Transcriptional r 27.4 1.2E+02 0.0026 28.2 5.1 84 72-159 128-230 (281)
457 PF00465 Fe-ADH: Iron-containi 27.3 1.4E+02 0.003 28.5 5.6 62 76-139 23-84 (366)
458 cd05005 SIS_PHI Hexulose-6-pho 27.2 3.2E+02 0.0069 23.2 7.3 80 73-156 32-125 (179)
459 cd03813 GT1_like_3 This family 27.2 4.2E+02 0.0091 26.0 9.0 85 76-161 295-381 (475)
460 PLN02285 methionyl-tRNA formyl 27.1 3.1E+02 0.0066 26.6 7.9 76 75-157 7-100 (334)
461 PRK05579 bifunctional phosphop 27.1 1.8E+02 0.0039 29.0 6.5 59 92-162 216-279 (399)
462 COG1578 Uncharacterized conser 27.1 2E+02 0.0042 28.2 6.5 91 69-166 146-251 (285)
463 PRK08159 enoyl-(acyl carrier p 27.1 2E+02 0.0044 25.8 6.4 39 69-111 5-43 (272)
464 PRK15454 ethanol dehydrogenase 27.1 2.2E+02 0.0048 28.0 7.0 18 148-167 104-121 (395)
465 PLN02712 arogenate dehydrogena 27.0 1.9E+02 0.0042 30.7 7.0 68 73-160 51-118 (667)
466 PRK10339 DNA-binding transcrip 27.0 2.5E+02 0.0054 25.4 6.9 19 92-110 85-103 (327)
467 cd03796 GT1_PIG-A_like This fa 26.9 4.9E+02 0.011 24.4 9.1 83 74-160 192-279 (398)
468 PRK06849 hypothetical protein; 26.9 2.1E+02 0.0045 27.4 6.7 35 74-114 4-38 (389)
469 PRK00208 thiG thiazole synthas 26.9 3.1E+02 0.0067 26.2 7.7 86 77-162 96-209 (250)
470 PRK07791 short chain dehydroge 26.8 4.8E+02 0.01 23.6 9.3 85 71-161 3-103 (286)
471 cd02042 ParA ParA and ParB of 26.7 1.3E+02 0.0027 22.8 4.3 34 78-111 2-35 (104)
472 PRK06200 2,3-dihydroxy-2,3-dih 26.7 3.6E+02 0.0078 23.5 7.7 34 72-111 4-37 (263)
473 PRK15408 autoinducer 2-binding 26.6 3.8E+02 0.0083 25.4 8.3 80 103-187 22-115 (336)
474 PRK01368 murD UDP-N-acetylmura 26.5 2.7E+02 0.0058 27.8 7.6 82 73-173 5-88 (454)
475 PRK13011 formyltetrahydrofolat 26.5 3.5E+02 0.0075 25.8 8.0 69 75-157 91-172 (286)
476 PRK12810 gltD glutamate syntha 26.5 4.7E+02 0.01 25.9 9.3 82 72-160 141-238 (471)
477 TIGR01680 Veg_Stor_Prot vegeta 26.5 96 0.0021 29.9 4.3 41 92-136 149-189 (275)
478 TIGR00465 ilvC ketol-acid redu 26.4 1.8E+02 0.004 27.9 6.2 97 72-191 1-100 (314)
479 PRK07984 enoyl-(acyl carrier p 26.4 1.8E+02 0.0038 26.2 5.8 38 70-111 2-39 (262)
480 PF06283 ThuA: Trehalose utili 26.4 1.1E+02 0.0023 26.9 4.3 36 76-111 1-40 (217)
481 TIGR03572 WbuZ glycosyl amidat 26.3 2.4E+02 0.0053 24.9 6.6 69 91-160 153-230 (232)
482 PRK08589 short chain dehydroge 26.2 3.9E+02 0.0085 23.7 8.0 78 72-161 4-93 (272)
483 TIGR01318 gltD_gamma_fam gluta 26.2 4.8E+02 0.01 26.0 9.3 82 73-161 140-237 (467)
484 PF12273 RCR: Chitin synthesis 26.2 45 0.00098 27.7 1.8 12 16-27 1-12 (130)
485 PLN02496 probable phosphopanto 26.2 1.6E+02 0.0035 27.2 5.5 76 74-159 19-105 (209)
486 COG1121 ZnuC ABC-type Mn/Zn tr 26.2 37 0.0008 32.2 1.4 14 73-86 188-201 (254)
487 PF01861 DUF43: Protein of unk 26.0 1.2E+02 0.0026 28.8 4.8 74 72-158 43-120 (243)
488 PRK00955 hypothetical protein; 26.0 1.5E+02 0.0033 31.6 6.0 36 76-111 15-50 (620)
489 PF03720 UDPG_MGDP_dh_C: UDP-g 25.9 1.9E+02 0.0041 22.9 5.3 53 93-159 19-75 (106)
490 cd03147 GATase1_Ydr533c_like T 25.8 1.5E+02 0.0033 27.1 5.3 24 92-115 23-49 (231)
491 cd06360 PBP1_alkylbenzenes_lik 25.6 3.5E+02 0.0075 24.2 7.5 81 93-173 122-214 (336)
492 PRK06139 short chain dehydroge 25.5 2.7E+02 0.0058 26.3 7.1 78 72-160 5-94 (330)
493 PF08357 SEFIR: SEFIR domain; 25.5 83 0.0018 25.8 3.3 18 92-109 17-35 (150)
494 TIGR00511 ribulose_e2b2 ribose 25.3 3.8E+02 0.0082 25.6 8.1 63 67-138 108-171 (301)
495 TIGR00441 gmhA phosphoheptose 25.3 1.2E+02 0.0025 25.6 4.2 37 75-115 81-117 (154)
496 COG4221 Short-chain alcohol de 25.3 2.3E+02 0.005 27.0 6.5 73 76-161 7-92 (246)
497 cd06338 PBP1_ABC_ligand_bindin 25.2 5.1E+02 0.011 23.4 9.5 85 95-183 129-228 (345)
498 PRK14024 phosphoribosyl isomer 25.2 2.4E+02 0.0051 25.6 6.4 72 87-161 31-108 (241)
499 PRK08226 short chain dehydroge 25.2 4.5E+02 0.0098 22.8 8.0 77 72-160 4-92 (263)
500 PLN02657 3,8-divinyl protochlo 25.2 4.9E+02 0.011 25.2 9.0 36 72-113 58-93 (390)
No 1
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.87 E-value=3.4e-23 Score=205.00 Aligned_cols=271 Identities=23% Similarity=0.117 Sum_probs=229.6
Q ss_pred CCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHhccCCCCCccccccccccc-cccCccccccCCCccccccccEEEE
Q 023401 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAALDPCDRHLEVSDKKRV-QSQSVPRIATKSSPLSFMKSKLVLL 79 (282)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~~~KkILL 79 (282)
|.+.+-+.|...||++|+.|....+..+|...-+.+.++..|+...--.+.... ++.-.-+.++ ..++.+++|+-+++
T Consensus 1 ~~~~~~~~~~~~qk~~~~~m~~~~~~~~t~~~~~~~~~~~~~~~~~gg~er~~v~~~~~l~s~~~-~lg~~d~G~qV~~l 79 (495)
T KOG0853|consen 1 MTNDSSSNISELQKVLWKAMIEKSLLVSTPEKPFEHVTFIHPDLGIGGAERLVVDAAVHLLSGQD-VLGLPDTGGQVVYL 79 (495)
T ss_pred CcchhhhHHHHhhhhhhhhhhhhhcccccccccchhheeeccccccCchHHHhHHHHHHHHhccc-ccCCCCCCceEEEE
Confidence 566666889999999999999999999999999999999999873333332211 1111111333 34599999999999
Q ss_pred EeccCCCCCchHHHHHHHHHHHh-CCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccCEEEEec
Q 023401 80 VSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNT 158 (282)
Q Consensus 80 ISHELs~TGAPLlLleLA~~Lkq-~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~DLVIaNT 158 (282)
++|+.+++ +|++++.++..|.. .++.|+......+-+ ..+++.+..+++.++..+....++.+.++|+||.|+
T Consensus 80 ~~h~~al~-~~~~~~~~~~~l~~~~~i~vv~~~lP~~~~-----~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~ 153 (495)
T KOG0853|consen 80 TSHEDALE-MPLLLRCFAETLDGTPPILVVGDWLPRAMG-----QFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDF 153 (495)
T ss_pred ehhhhhhc-chHHHHHHHHHhcCCCceEEEEeecCcccc-----hhhhhhhccceeEEEEeccchhhhhhhhhceeecch
Confidence 99999999 99999999999998 899998888655521 457889999999999999888888889999999999
Q ss_pred hhchHHHHHHhhccCCCCCCceEEEeeeccccccc-ccccccccccccccccchhhHHHHHHhhhhhcCCCCCCeeEEEe
Q 023401 159 AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHL 237 (282)
Q Consensus 159 ~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~-l~~vkhL~~v~~~~~dS~Ata~~w~~~~~~~l~Ikl~~~~vv~L 237 (282)
++++.|+.++++. |.+.++++||+||.+++|++ +.-.+++++.+.-++++|++..||+++++...-.+.+++++++|
T Consensus 154 ~~~~~~l~~~~~~--p~~~~~i~~~~h~~~~lla~r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L 231 (495)
T KOG0853|consen 154 VSACVPLLKQLSG--PDVIIKIYFYCHFPDSLLAKRLGVLKVLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSL 231 (495)
T ss_pred HHHHHHHHHHhcC--CcccceeEEeccchHHHhccccCccceeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhc
Confidence 9999999999854 88888999999999999999 55788899999999999999999999998765666668999999
Q ss_pred cCcHHHHHHHHHH---------HHHHHHHHHHHHHhCCCCCCEEEEEecccc
Q 023401 238 GNSKELMEVAEDN---------VAKRVLREHVRESLGVRNEDLLFAIINRHR 280 (282)
Q Consensus 238 ~~~~~l~~~a~~~---------v~~~~lre~vr~~lGl~~dd~lv~~~~s~~ 280 (282)
+++|..+..+|++ +++..+++.+|.+.|+.+.|+++..+|+++
T Consensus 232 ~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~ 283 (495)
T KOG0853|consen 232 SNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINRFE 283 (495)
T ss_pred CCCCcceeeccccchhccccccccchhcccccceeeeecccceEeeeeeecC
Confidence 9999999988875 456679999999999999999999999985
No 2
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.52 E-value=4.5e-06 Score=71.61 Aligned_cols=177 Identities=20% Similarity=0.225 Sum_probs=105.7
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh---c---h---hH-H
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---G---Q---ET-I 145 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k---~---~---~~-i 145 (282)
||++|.+.++.+|+...+.+|++.|.+.|+++.+++...+. .+.+++.+.|+++..-. + . .. .
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~-------~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 73 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRG-------ELGEELEEAGVPVYCLGKRPGRPDPGALLRLY 73 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcch-------hhhHHHHhcCCeEEEEecccccccHHHHHHHH
Confidence 59999999999999999999999999999999999854432 23455555688775321 1 0 11 1
Q ss_pred H--HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccc---cc----------ccccccccccccccccc
Q 023401 146 N--TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---FK----------LDYVKHLPLVAGAMIDS 210 (282)
Q Consensus 146 ~--~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Y---f~----------l~~vkhL~~v~~~~~dS 210 (282)
+ ...++|+|+........ ...+.... ...+|++|.+|+..... .. ...+.++.. -|
T Consensus 74 ~~~~~~~~div~~~~~~~~~-~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------~s 144 (365)
T cd03807 74 KLIRRLRPDVVHTWMYHADL-YGGLAARL--AGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVA------NS 144 (365)
T ss_pred HHHHhhCCCEEEeccccccH-HHHHHHHh--cCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEe------cc
Confidence 1 24579999987543222 22121111 12459999999986441 11 122333344 48
Q ss_pred hhhHHHHHHhhhhhcCCCCCCeeEEEecCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccc
Q 023401 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINRH 279 (282)
Q Consensus 211 ~Ata~~w~~~~~~~l~Ikl~~~~vv~L~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~~~s~ 279 (282)
+.+.+++....-+.. +..+++-+-...... ... -.++.+|+++|++++..+++...++
T Consensus 145 ~~~~~~~~~~~~~~~-----~~~vi~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~i~~~G~~ 202 (365)
T cd03807 145 AAAAEYHQAIGYPPK-----KIVVIPNGVDTERFS----PDL--DARARLREELGLPEDTFLIGIVARL 202 (365)
T ss_pred HHHHHHHHHcCCChh-----heeEeCCCcCHHhcC----Ccc--cchHHHHHhcCCCCCCeEEEEeccc
Confidence 888888876411111 222343333222111 111 1345567889999998888776654
No 3
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.24 E-value=5.2e-05 Score=67.22 Aligned_cols=177 Identities=11% Similarity=0.101 Sum_probs=107.2
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh--------chhHHH-
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--------GQETIN- 146 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k--------~~~~i~- 146 (282)
|||+++|+++.+|+...+.++++.|.+.|++|.+++..+++. .+.+++...|+.++... ....+.
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEG------DYDDEIEKLGGKIYYIPARKKNPLKYFKKLYK 74 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCc------chHHHHHHcCCeEEEecCCCccHHHHHHHHHH
Confidence 599999999999999999999999999999999999665531 23456666677776321 111111
Q ss_pred --HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc--------------ccccccccccccccccc
Q 023401 147 --TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK--------------LDYVKHLPLVAGAMIDS 210 (282)
Q Consensus 147 --~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~--------------l~~vkhL~~v~~~~~dS 210 (282)
...++|+|++++.... ++..+.... ...+.++.|.|+....... .....++..+ |
T Consensus 75 ~~~~~~~Dvv~~~~~~~~-~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------s 145 (358)
T cd03812 75 LIKKNKYDIVHVHGSSAS-GFILLAAKK--AGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLAC------S 145 (358)
T ss_pred HHhcCCCCEEEEeCcchh-HHHHHHHhh--CCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEc------C
Confidence 2457999999987633 333222111 2344678889987632211 1222334444 8
Q ss_pred hhhHHHHHHhhhhhcCCCCCCeeEEEecCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecccc
Q 023401 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINRHR 280 (282)
Q Consensus 211 ~Ata~~w~~~~~~~l~Ikl~~~~vv~L~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~~~s~~ 280 (282)
+..+++..... . -.+..|++-+....--. ... ..++. +++.+..++...|+.+.++.
T Consensus 146 ~~~~~~~~~~~-~-----~~~~~vi~ngvd~~~~~----~~~--~~~~~-~~~~~~~~~~~~i~~vGr~~ 202 (358)
T cd03812 146 EEAGKWLFGKV-K-----NKKFKVIPNGIDLEKFI----FNE--EIRKK-RRELGILEDKFVIGHVGRFS 202 (358)
T ss_pred HHHHHHHHhCC-C-----cccEEEEeccCcHHHcC----CCc--hhhhH-HHHcCCCCCCEEEEEEeccc
Confidence 88887765441 1 11334455444322111 000 11222 77788899998888777653
No 4
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.18 E-value=1.5e-05 Score=67.56 Aligned_cols=136 Identities=17% Similarity=0.143 Sum_probs=81.1
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCC---c-eeehhchhHHH---Hh
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV---Q-VISAKGQETIN---TA 148 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI---~-v~~~k~~~~i~---~a 148 (282)
||+++++....+|+...+.++++.|++.|++|.+++................ ...... . .........+. ..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVK-LIPVRVLKLKSLRDLLAILRLRRLLRK 79 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchh-hhceeeeecccccchhHHHHHHHHHHh
Confidence 5899999999999999999999999999999999995544321111000000 000000 0 00001111111 24
Q ss_pred hccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc------------ccccccccccccccccchhhHHH
Q 023401 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------------LDYVKHLPLVAGAMIDSHVTAEY 216 (282)
Q Consensus 149 ~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~------------l~~vkhL~~v~~~~~dS~Ata~~ 216 (282)
.++|+|+.++- ...++-....... ..|+++|+|+....+.. +++.+++.++ |+.++++
T Consensus 80 ~~~dii~~~~~-~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~------s~~~~~~ 149 (353)
T cd03811 80 EKPDVVISHLT-TTPNVLALLAARL---GTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAV------SEGVKED 149 (353)
T ss_pred cCCCEEEEcCc-cchhHHHHHHhhc---CCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEe------ccchhhh
Confidence 56999999997 3333333332221 34999999998733222 1333444444 9999998
Q ss_pred HHHhhh
Q 023401 217 WKNRTR 222 (282)
Q Consensus 217 w~~~~~ 222 (282)
......
T Consensus 150 ~~~~~~ 155 (353)
T cd03811 150 LLKLLG 155 (353)
T ss_pred HHHhhc
Confidence 887765
No 5
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.06 E-value=0.00013 Score=62.95 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=36.6
Q ss_pred EEEEEeccC--CCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 023401 76 LVLLVSHEL--SLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (282)
Q Consensus 76 kILLISHEL--s~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (282)
|||+|++.+ +.+|+.....++++.|.+.|++|.+++..++.
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGG 43 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCC
Confidence 589999999 68899999999999999999999999966554
No 6
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.05 E-value=3.5e-05 Score=70.10 Aligned_cols=130 Identities=17% Similarity=0.196 Sum_probs=79.6
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee------hh--c-----
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS------AK--G----- 141 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~------~k--~----- 141 (282)
+||+++.++++.+|+.-++.+||+.|.+.|++|.+++...++. . ..++..+.++++.. .. .
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~--~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 74 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPS--H----CFEETKDGTLPVRVRGDWLPRSIFGRFHIL 74 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCch--h----cchhccCCeeEEEEEeEEEcchhhHhHHHH
Confidence 5799999999999999999999999999999999999643320 0 01112221222211 00 0
Q ss_pred ---hhH--------HHHhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc-----------------
Q 023401 142 ---QET--------INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK----------------- 193 (282)
Q Consensus 142 ---~~~--------i~~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~----------------- 193 (282)
.+. +....++|+|+++++..+-++-... .. .|+++|+|.....+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~----~~--~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e 148 (392)
T cd03805 75 CAYLRMLYLALYLLLLPDEKYDVFIVDQVSACVPLLKLF----SP--SKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLE 148 (392)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEcCcchHHHHHHHh----cC--CcEEEEEecChHHhcCCCcHHHHHHHHHHHHHH
Confidence 000 0123579999999876655443222 11 4999999953321110
Q ss_pred ---ccccccccccccccccchhhHHHHHHhhh
Q 023401 194 ---LDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (282)
Q Consensus 194 ---l~~vkhL~~v~~~~~dS~Ata~~w~~~~~ 222 (282)
.+++.++..+ |+.++++....++
T Consensus 149 ~~~~~~ad~ii~~------s~~~~~~~~~~~~ 174 (392)
T cd03805 149 EFTTGMADKIVVN------SNFTASVFKKTFP 174 (392)
T ss_pred HHHhhCceEEEEc------ChhHHHHHHHHhc
Confidence 2234445555 9999988876654
No 7
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=97.95 E-value=8.2e-06 Score=64.52 Aligned_cols=138 Identities=14% Similarity=0.040 Sum_probs=75.5
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCC-chhhhhhhHHHH-HHcCCceeehhchhHHH---Hhhcc
Q 023401 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSE-EDEVIYSLEHKM-WDRGVQVISAKGQETIN---TALKA 151 (282)
Q Consensus 77 ILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~-~~~v~~~L~~kl-l~rgI~v~~~k~~~~i~---~a~~~ 151 (282)
++...|-.+..|+-..+++|++.|.+.|++|.+++...++. ..+......... .........-.....+. ...++
T Consensus 2 li~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (177)
T PF13439_consen 2 LITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEKP 81 (177)
T ss_dssp EEECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT-
T ss_pred EEEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHHHHcCC
Confidence 34455566667999999999999999999999999555541 111000000000 00000000001111111 24589
Q ss_pred CEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccc----------c-------ccc--ccccccccccccccccchh
Q 023401 152 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG----------H-------YFK--LDYVKHLPLVAGAMIDSHV 212 (282)
Q Consensus 152 DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~----------~-------Yf~--l~~vkhL~~v~~~~~dS~A 212 (282)
|+|.+|+.....+.-.... ++ |+++.+|.... . |.. .++.++++++ |+.
T Consensus 82 DiVh~~~~~~~~~~~~~~~-~~-----~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v------S~~ 149 (177)
T PF13439_consen 82 DIVHIHGPPAFWIALLACR-KV-----PIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAV------SES 149 (177)
T ss_dssp SEEECCTTHCCCHHHHHHH-CS-----CEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEES------SHH
T ss_pred CeEEecccchhHHHHHhcc-CC-----CEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEE------CHH
Confidence 9998998765544433322 33 99999999651 0 000 3567788889 999
Q ss_pred hHHHHHHhhh-hhcCC
Q 023401 213 TAEYWKNRTR-ERLRI 227 (282)
Q Consensus 213 ta~~w~~~~~-~~l~I 227 (282)
+++...+ .+ ++.+|
T Consensus 150 ~~~~l~~-~~~~~~ki 164 (177)
T PF13439_consen 150 TKDELIK-FGIPPEKI 164 (177)
T ss_dssp HHHHHHH-HT--SS-E
T ss_pred HHHHHHH-hCCcccCC
Confidence 9999998 75 43344
No 8
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=97.84 E-value=0.00032 Score=60.72 Aligned_cols=135 Identities=11% Similarity=0.016 Sum_probs=75.3
Q ss_pred EEEEEeccCCC---CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH----c-----------CCcee
Q 023401 76 LVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD----R-----------GVQVI 137 (282)
Q Consensus 76 kILLISHELs~---TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~----r-----------gI~v~ 137 (282)
|||+|||...- .|+...+.++++.|.+.|++|.+++...+................ . .....
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD 80 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhcc
Confidence 58999999865 499999999999999999999999955443211100000000000 0 00000
Q ss_pred e---hhchhHHHHhhccCEEEEechhc--hHHHHHHhhccCCCCCCceEEEeeeccccccc----ccccccccccccccc
Q 023401 138 S---AKGQETINTALKADLIVLNTAVA--GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK----LDYVKHLPLVAGAMI 208 (282)
Q Consensus 138 ~---~k~~~~i~~a~~~DLVIaNT~v~--g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~----l~~vkhL~~v~~~~~ 208 (282)
. .+..+.+-...++|+|++++... ...+..+.+.. -|++..+||....+.. ....+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~-----~~~i~~~hd~~~~~~~~~~~~~~~d~ii~~----- 150 (359)
T cd03823 81 NPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRG-----IPIVLTLHDYWLICPRQGLFKKGGDAVIAP----- 150 (359)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcC-----CCEEEEEeeeeeecchhhhhccCCCEEEEe-----
Confidence 0 00111111246799999999532 22233332222 3999999985422211 1222445555
Q ss_pred cchhhHHHHHHhh
Q 023401 209 DSHVTAEYWKNRT 221 (282)
Q Consensus 209 dS~Ata~~w~~~~ 221 (282)
|+..++++.++.
T Consensus 151 -s~~~~~~~~~~~ 162 (359)
T cd03823 151 -SRFLLDRYVANG 162 (359)
T ss_pred -CHHHHHHHHHcC
Confidence 999988887654
No 9
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.84 E-value=0.00028 Score=62.24 Aligned_cols=179 Identities=17% Similarity=0.180 Sum_probs=96.8
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceee--hh-------chhHH
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVIS--AK-------GQETI 145 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r-gI~v~~--~k-------~~~~i 145 (282)
+||++++.++.+|+.-...+|++.|++.|++|.+++..+++..... ...... .+.... .. ..+.+
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPP-----IDATIILNLNMSKNPLSFLLALWKLRKIL 75 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccch-----hhccceEEecccccchhhHHHHHHHHHHH
Confidence 4899999999999999999999999999999999985544311111 000000 010000 00 11111
Q ss_pred HHhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecccc--ccc------ccccccccccccccccchhhHHHH
Q 023401 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH--YFK------LDYVKHLPLVAGAMIDSHVTAEYW 217 (282)
Q Consensus 146 ~~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~--Yf~------l~~vkhL~~v~~~~~dS~Ata~~w 217 (282)
...++|.|.+++.-+. ++..+.+.. ...+|++.+.|..... +.. ..+......+ |....++.
T Consensus 76 -~~~~pdiv~~~~~~~~-~~~~l~~~~--~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~------s~~~~~~~ 145 (360)
T cd04951 76 -RQFKPDVVHAHMFHAN-IFARLLRLF--LPSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNV------SKEALDYF 145 (360)
T ss_pred -HhcCCCEEEEcccchH-HHHHHHHhh--CCCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEE------cHHHHHHH
Confidence 2457999999876433 233332221 1234889999976411 100 0111222233 66666666
Q ss_pred HHhhhhhcCCCCCCeeEEEecCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccc
Q 023401 218 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINRH 279 (282)
Q Consensus 218 ~~~~~~~l~Ikl~~~~vv~L~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~~~s~ 279 (282)
.+... +...+..+++-+....... ... -.+...|+++|+++++.+|....++
T Consensus 146 ~~~~~----~~~~~~~~i~ng~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~l~~g~~ 197 (360)
T cd04951 146 IASKA----FNANKSFVVYNGIDTDRFR----KDP--ARRLKIRNALGVKNDTFVILAVGRL 197 (360)
T ss_pred HhccC----CCcccEEEEccccchhhcC----cch--HHHHHHHHHcCcCCCCEEEEEEeeC
Confidence 55432 2212344455554332221 111 1345678999999988777665543
No 10
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=97.82 E-value=0.00028 Score=62.54 Aligned_cols=170 Identities=12% Similarity=0.074 Sum_probs=95.7
Q ss_pred CCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh-----------chhHH-H--Hhh
Q 023401 84 LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----------GQETI-N--TAL 149 (282)
Q Consensus 84 Ls~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k-----------~~~~i-~--~a~ 149 (282)
++.+|+....++|++.|++.|++|.+++..+. ..+.+...|+.+..-. ....+ + ...
T Consensus 7 ~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (355)
T cd03819 7 LESGGVERGTLELARALVERGHRSLVASAGGR---------LVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREE 77 (355)
T ss_pred hccCcHHHHHHHHHHHHHHcCCEEEEEcCCCc---------hHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHc
Confidence 66799999999999999999999999885422 2333444455443210 00111 1 245
Q ss_pred ccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccc---cc-ccccccccccccccccchhhHHHHHHhhhhhc
Q 023401 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---FK-LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERL 225 (282)
Q Consensus 150 ~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Y---f~-l~~vkhL~~v~~~~~dS~Ata~~w~~~~~~~l 225 (282)
++|+|++++... .|...+.... ...|+++++|+..... .. +.+.+++.++ |+.++++.++..+
T Consensus 78 ~~dii~~~~~~~-~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~------s~~~~~~~~~~~~--- 144 (355)
T cd03819 78 KVDIVHARSRAP-AWSAYLAARR---TRPPFVTTVHGFYSVNFRYNAIMARGDRVIAV------SNFIADHIRENYG--- 144 (355)
T ss_pred CCCEEEECCCch-hHHHHHHHHh---cCCCEEEEeCCchhhHHHHHHHHHhcCEEEEe------CHHHHHHHHHhcC---
Confidence 799999987533 2332222111 1239999999875322 11 2344555555 9999888874443
Q ss_pred CCCCCCeeEEEecCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccc
Q 023401 226 RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINRH 279 (282)
Q Consensus 226 ~Ikl~~~~vv~L~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~~~s~ 279 (282)
+.-.+..+++-|...+...... ... ...+.+|+.++.+++..+++....+
T Consensus 145 -~~~~k~~~i~ngi~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~i~~~Gr~ 194 (355)
T cd03819 145 -VDPDRIRVIPRGVDLDRFDPGA-VPP--ERILALAREWPLPKGKPVILLPGRL 194 (355)
T ss_pred -CChhhEEEecCCccccccCccc-cch--HHHHHHHHHcCCCCCceEEEEeecc
Confidence 2111333455443322221000 000 1122378889999998877665543
No 11
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=97.82 E-value=0.00029 Score=60.20 Aligned_cols=135 Identities=17% Similarity=0.127 Sum_probs=79.2
Q ss_pred EEEEeccCCC---CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhH-------HHHHHc----CCceeehhch
Q 023401 77 VLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE-------HKMWDR----GVQVISAKGQ 142 (282)
Q Consensus 77 ILLISHELs~---TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~-------~kll~r----gI~v~~~k~~ 142 (282)
||+|+|.... +|+...+.+++..|.+.|++|.+++............... ...... ..........
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAA 80 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHH
Confidence 6889999885 8999999999999999999999999544432111100000 000000 0000000111
Q ss_pred hHHH---H--hhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc------------cccccccccccc
Q 023401 143 ETIN---T--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------------LDYVKHLPLVAG 205 (282)
Q Consensus 143 ~~i~---~--a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~------------l~~vkhL~~v~~ 205 (282)
..+. . ..++|+|+++......++........ ..|+++++|+..-..+. +++...+.++
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~---~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~-- 155 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKL---GIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAV-- 155 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhc---CCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeC--
Confidence 1111 2 56899999997766555554442221 24999999997633322 2233344444
Q ss_pred ccccchhhHHHHHHh
Q 023401 206 AMIDSHVTAEYWKNR 220 (282)
Q Consensus 206 ~~~dS~Ata~~w~~~ 220 (282)
|+...++..+.
T Consensus 156 ----s~~~~~~~~~~ 166 (377)
T cd03798 156 ----SEALADELKAL 166 (377)
T ss_pred ----CHHHHHHHHHh
Confidence 99999888775
No 12
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.80 E-value=0.00039 Score=63.41 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=59.6
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc--------hhHHH
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------QETIN 146 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~--------~~~i~ 146 (282)
.+|+.|...++..|+--++++|++.|.+.|+++.+++..+++ .+.+++.+.|+.+..-.. ...+.
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 74 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVS-------AFRKRIQRPDVAFYALHKQPGKDVAVYPQLY 74 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCC-------hhHHHHHhcCceEEEeCCCCCCChHHHHHHH
Confidence 369999999999999999999999999999998888754432 357788888888753321 11111
Q ss_pred ---HhhccCEEEEechh
Q 023401 147 ---TALKADLIVLNTAV 160 (282)
Q Consensus 147 ---~a~~~DLVIaNT~v 160 (282)
...++|+|.+++..
T Consensus 75 ~~l~~~~~Divh~~~~~ 91 (374)
T TIGR03088 75 RLLRQLRPDIVHTRNLA 91 (374)
T ss_pred HHHHHhCCCEEEEcchh
Confidence 35679999999853
No 13
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=97.79 E-value=8.7e-05 Score=64.00 Aligned_cols=40 Identities=30% Similarity=0.284 Sum_probs=35.9
Q ss_pred EEEEEeccCCC--CCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 76 kILLISHELs~--TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
|||+|+|.... +|+.....++++.|.+.|++|.+++...+
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPN 42 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCC
Confidence 59999999877 79999999999999999999999995544
No 14
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.76 E-value=0.00061 Score=61.09 Aligned_cols=175 Identities=17% Similarity=0.153 Sum_probs=94.1
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce-----eeh-----hchhHH
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-----ISA-----KGQETI 145 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v-----~~~-----k~~~~i 145 (282)
||++++|- ...|++..+.++++.|.+.|++|.+++...+....+ ..+.+.-..+++ ... ...+.+
T Consensus 2 ki~~~~~p-~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 76 (371)
T cd04962 2 KIGIVCYP-TYGGSGVVATELGKALARRGHEVHFITSSRPFRLDE----YSPNIFFHEVEVPQYPLFQYPPYDLALASKI 76 (371)
T ss_pred ceeEEEEe-CCCCccchHHHHHHHHHhcCCceEEEecCCCcchhh----hccCeEEEEecccccchhhcchhHHHHHHHH
Confidence 68888873 467999999999999999999999998543310000 000000001111 000 011111
Q ss_pred H---HhhccCEEEEechhc----hHHHHHHhhccCCCCCCceEEEeeecccc-------ccc-----ccccccccccccc
Q 023401 146 N---TALKADLIVLNTAVA----GKWLDAVLKEDVPRVLPNVLWWIHEMRGH-------YFK-----LDYVKHLPLVAGA 206 (282)
Q Consensus 146 ~---~a~~~DLVIaNT~v~----g~wl~~l~~~~~~~~~~pVIWWIHE~r~~-------Yf~-----l~~vkhL~~v~~~ 206 (282)
. ...++|+|..|+... +-+...+.+ ....|+++.+|+.... |.. ++++.+++.+
T Consensus 77 ~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~--- 149 (371)
T cd04962 77 AEVAKRYKLDLLHVHYAVPHAVAAYLAREILG----KKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAV--- 149 (371)
T ss_pred HHHHhcCCccEEeecccCCccHHHHHHHHhcC----cCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEc---
Confidence 1 235799999986532 122222211 1123899999976421 111 2344455555
Q ss_pred cccchhhHHHHHHhhhhhcCCCCCCeeEEEecCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecc
Q 023401 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINR 278 (282)
Q Consensus 207 ~~dS~Ata~~w~~~~~~~l~Ikl~~~~vv~L~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~~~s 278 (282)
|+..+++..+.+.... +..+++-+.+..... . ..++..|+++|+++++.++..+..
T Consensus 150 ---s~~~~~~~~~~~~~~~-----~i~vi~n~~~~~~~~----~----~~~~~~~~~~~~~~~~~~il~~g~ 205 (371)
T cd04962 150 ---SESLRQETYELFDITK-----EIEVIPNFVDEDRFR----P----KPDEALKRRLGAPEGEKVLIHISN 205 (371)
T ss_pred ---CHHHHHHHHHhcCCcC-----CEEEecCCcCHhhcC----C----CchHHHHHhcCCCCCCeEEEEecc
Confidence 9998888776653211 223344443322211 0 123445678899988888766554
No 15
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=97.75 E-value=8.9e-05 Score=65.09 Aligned_cols=127 Identities=12% Similarity=0.003 Sum_probs=80.6
Q ss_pred cEEEEEeccC------CCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce----e---ehh-
Q 023401 75 KLVLLVSHEL------SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV----I---SAK- 140 (282)
Q Consensus 75 KkILLISHEL------s~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v----~---~~k- 140 (282)
+||++|++.. ...|+.....+|++.|++.|++|.+++..++...... . ......... . ...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~ 75 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPL----V-PVVPEPLRLDAPGRDRAEAEA 75 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccce----e-eccCCCcccccchhhHhhHHH
Confidence 4799999998 7889999999999999999999999996555311111 0 000000000 0 000
Q ss_pred --chhHHHHhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc-----ccccccccccccccccchhh
Q 023401 141 --GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-----LDYVKHLPLVAGAMIDSHVT 213 (282)
Q Consensus 141 --~~~~i~~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~-----l~~vkhL~~v~~~~~dS~At 213 (282)
....+-...++|+|.+|+.....+ ... ....|+|+++|.....+.. .....+++++ |+..
T Consensus 76 ~~~~~~~~~~~~~Divh~~~~~~~~~--~~~-----~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~------s~~~ 142 (335)
T cd03802 76 LALAERALAAGDFDIVHNHSLHLPLP--FAR-----PLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSI------SDAQ 142 (335)
T ss_pred HHHHHHHHhcCCCCEEEecCcccchh--hhc-----ccCCCEEEEecCCCCcccchHHHhhCcCCeEEEe------cHHH
Confidence 111111346799999999877765 121 1223999999987644332 2344456666 9999
Q ss_pred HHHHHH
Q 023401 214 AEYWKN 219 (282)
Q Consensus 214 a~~w~~ 219 (282)
.++|..
T Consensus 143 ~~~~~~ 148 (335)
T cd03802 143 RRPWPP 148 (335)
T ss_pred Hhhccc
Confidence 998866
No 16
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.67 E-value=0.00029 Score=59.73 Aligned_cols=137 Identities=17% Similarity=0.030 Sum_probs=82.0
Q ss_pred EEEEEeccCCC--CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHH---HcCCce--eeh---hchhHH
Q 023401 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW---DRGVQV--ISA---KGQETI 145 (282)
Q Consensus 76 kILLISHELs~--TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll---~rgI~v--~~~---k~~~~i 145 (282)
||++|+|.... +|+...+.++++.|.+.|++|.+++................... ...... ... .....+
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 58999998765 59999999999999999999999996544321111000000000 000000 000 011111
Q ss_pred HHhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc-----------------ccccccccccccccc
Q 023401 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-----------------LDYVKHLPLVAGAMI 208 (282)
Q Consensus 146 ~~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~-----------------l~~vkhL~~v~~~~~ 208 (282)
....++|+|+++............+ ....|+++++|+..-.+.. +++..++..+
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~----~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~----- 151 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAAR----LLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAV----- 151 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHH----hcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEe-----
Confidence 1356799999999877665432211 1123999999998743320 3455556666
Q ss_pred cchhhHHHHHHhhh
Q 023401 209 DSHVTAEYWKNRTR 222 (282)
Q Consensus 209 dS~Ata~~w~~~~~ 222 (282)
|+..++++.+...
T Consensus 152 -s~~~~~~~~~~~~ 164 (374)
T cd03801 152 -SEATREELRELGG 164 (374)
T ss_pred -cHHHHHHHHhcCC
Confidence 9999998888764
No 17
>PRK10307 putative glycosyl transferase; Provisional
Probab=97.63 E-value=0.00054 Score=64.07 Aligned_cols=39 Identities=26% Similarity=0.205 Sum_probs=33.3
Q ss_pred cEEEEEeccCC--CCCchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 75 KLVLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 75 KkILLISHELs--~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
.||++|||... ..|+.....+|++.|.+.|++|.+++..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecC
Confidence 37999998753 3588889999999999999999999954
No 18
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=97.62 E-value=0.0011 Score=57.43 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=35.5
Q ss_pred EEEEEeccC--CCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 023401 76 LVLLVSHEL--SLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (282)
Q Consensus 76 kILLISHEL--s~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (282)
|||++++.. ..+|+.....++++.|.+.|++|.+++...++
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPG 43 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 589999887 56799999999999999999999999965543
No 19
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=97.57 E-value=0.0013 Score=58.15 Aligned_cols=81 Identities=25% Similarity=0.346 Sum_probs=58.0
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccCEEE
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIV 155 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~DLVI 155 (282)
|||++++..+.+|+.....++++.|++.|++|.+++.... .+..+ + ...++|+|.
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~--------~~~~~----------------~-~~~~~diih 56 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK--------ALISK----------------I-EIINADIVH 56 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc--------hhhhC----------------h-hcccCCEEE
Confidence 7999999999899999999999999999999999995432 11111 1 256788888
Q ss_pred Eechhch----HHHHHHhhccCCCCCCceEEEeeec
Q 023401 156 LNTAVAG----KWLDAVLKEDVPRVLPNVLWWIHEM 187 (282)
Q Consensus 156 aNT~v~g----~wl~~l~~~~~~~~~~pVIWWIHE~ 187 (282)
++....+ .++..+. .++ |+|+.+|+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~-~~~-----~~v~~~hd~ 86 (365)
T cd03825 57 LHWIHGGFLSIEDLSKLL-DRK-----PVVWTLHDM 86 (365)
T ss_pred EEccccCccCHHHHHHHH-cCC-----CEEEEcccC
Confidence 7664332 2222221 133 999999986
No 20
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.57 E-value=0.00024 Score=62.00 Aligned_cols=132 Identities=15% Similarity=0.015 Sum_probs=78.0
Q ss_pred EEEEEeccCCC---CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHH-HHc-CCceeeh-----hchhHH
Q 023401 76 LVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKM-WDR-GVQVISA-----KGQETI 145 (282)
Q Consensus 76 kILLISHELs~---TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kl-l~r-gI~v~~~-----k~~~~i 145 (282)
+|+++++.+.. +|..-.+.+|++.|.+.|++|.+++...+.............. ... +...... ......
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 58888888876 7999999999999999999999999665532111100000000 000 0000000 011111
Q ss_pred HHhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc------------------cccccccccccccc
Q 023401 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------------------LDYVKHLPLVAGAM 207 (282)
Q Consensus 146 ~~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~------------------l~~vkhL~~v~~~~ 207 (282)
....++|+|+++.....-. . .. ..|++.++||.--.++. +++.+++.++
T Consensus 81 ~~~~~~Dii~~~~~~~~~~----~----~~-~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~---- 147 (365)
T cd03809 81 LLLLGLDLLHSPHNTAPLL----R----LR-GVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITV---- 147 (365)
T ss_pred hhhcCCCeeeecccccCcc----c----CC-CCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEc----
Confidence 1245699999999865544 1 11 23999999986421111 2344555666
Q ss_pred ccchhhHHHHHHhhh
Q 023401 208 IDSHVTAEYWKNRTR 222 (282)
Q Consensus 208 ~dS~Ata~~w~~~~~ 222 (282)
|+.++++..+.++
T Consensus 148 --s~~~~~~~~~~~~ 160 (365)
T cd03809 148 --SEATKRDLLRYLG 160 (365)
T ss_pred --cHHHHHHHHHHhC
Confidence 9999988887764
No 21
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.35 E-value=0.0047 Score=56.88 Aligned_cols=105 Identities=23% Similarity=0.313 Sum_probs=64.9
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH--cCCce-eehhchhHHH------
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQV-ISAKGQETIN------ 146 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~--rgI~v-~~~k~~~~i~------ 146 (282)
||+++++-++..|..-.++++++.|.+.|++|.+++...+++ .. ...+++.. .|.+. +.......+.
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~---~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPE---FF-NVTKKFHNALQGADIELSEEEKEIYLEWNEEN 76 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChh---HH-HHHHHhhHhhcCCCCCCCHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999998554421 11 11112111 24443 2221111111
Q ss_pred -----HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccc
Q 023401 147 -----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG 189 (282)
Q Consensus 147 -----~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~ 189 (282)
...++|+|.+++....- +....+. ...|+|++.|....
T Consensus 77 ~~~~~~~~~~Dvv~~h~~~~~~-~~~~~~~----~~~~~i~~~H~~~~ 119 (372)
T cd03792 77 AERPLLDLDADVVVIHDPQPLA-LPLFKKK----RGRPWIWRCHIDLS 119 (372)
T ss_pred hccccccCCCCEEEECCCCchh-HHHhhhc----CCCeEEEEeeeecC
Confidence 13479999999875322 2222211 12389999997653
No 22
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.27 E-value=0.0066 Score=53.83 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=32.3
Q ss_pred EEEEE-eccC--CCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 76 LVLLV-SHEL--SLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 76 kILLI-SHEL--s~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
||++| ++.. ...|+...+.++|+.|.+.|++|.+++...+
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~ 43 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPY 43 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 46777 4433 5679999999999999999999999996544
No 23
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=97.22 E-value=0.0058 Score=53.44 Aligned_cols=40 Identities=20% Similarity=0.147 Sum_probs=35.3
Q ss_pred EEEEEeccCC-CCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 76 kILLISHELs-~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
||+||+.... ..|..-...+|++.|.+.|++|.++....+
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 5899998888 679999999999999999999999985544
No 24
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=97.13 E-value=0.0049 Score=55.50 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=31.1
Q ss_pred EEEEeccCC--CCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 77 VLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 77 ILLISHELs--~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
+++.++..+ ..|+...+.+|++.|.+.|++|.+++....
T Consensus 9 ~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~ 49 (398)
T cd03800 9 GSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRID 49 (398)
T ss_pred ccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCC
Confidence 445555554 568999999999999999999999985443
No 25
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.11 E-value=0.0031 Score=53.64 Aligned_cols=109 Identities=18% Similarity=0.151 Sum_probs=65.2
Q ss_pred EEEEEeccCC-CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee-------ehhchhHHH-
Q 023401 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI-------SAKGQETIN- 146 (282)
Q Consensus 76 kILLISHELs-~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~-------~~k~~~~i~- 146 (282)
||+++++.+. .+|+...+.++++.|.+.|++|.+++....+ .... .+.+.+.-..++.. .-.....+.
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGE-PPFY--ELDPKIKVIDLGDKRDSKLLARFKKLRRLRK 77 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCC-CCcc--ccCCccceeecccccccchhccccchHHHHH
Confidence 5889999998 8999999999999999999999999955442 0000 11111111111110 001111111
Q ss_pred --HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecccccc
Q 023401 147 --TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF 192 (282)
Q Consensus 147 --~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf 192 (282)
...++|+|+.+..-...++..+. .. ..|++.|.|.....+.
T Consensus 78 ~l~~~~~d~i~~~~~~~~~~~~~~~-~~----~~~~i~~~~~~~~~~~ 120 (348)
T cd03820 78 LLKNNKPDVVISFLTSLLTFLASLG-LK----IVKLIVSEHNSPDAYK 120 (348)
T ss_pred hhcccCCCEEEEcCchHHHHHHHHh-hc----cccEEEecCCCccchh
Confidence 24689999999876333333332 11 1389999998764433
No 26
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=96.94 E-value=0.011 Score=50.55 Aligned_cols=126 Identities=15% Similarity=0.145 Sum_probs=76.2
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc-------------h
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-------------Q 142 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~-------------~ 142 (282)
||++|++. ..|+...+.++++.|++.|++|.+++...+... .+...|+.+..-+. .
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE---------ELEALGVKVIPIPLDRRGINPFKDLKAL 69 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc---------ccccCCceEEeccccccccChHhHHHHH
Confidence 58999999 678999999999999999999999996655311 22333443331110 1
Q ss_pred hHHH---HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc---------------ccccccccccc
Q 023401 143 ETIN---TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------------LDYVKHLPLVA 204 (282)
Q Consensus 143 ~~i~---~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~---------------l~~vkhL~~v~ 204 (282)
..+. ...++|+|++++.-.+-+ ..+... ....++++.++|+..-.+.. +++.+++..+
T Consensus 70 ~~~~~~~~~~~~dvv~~~~~~~~~~-~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~- 145 (359)
T cd03808 70 LRLYRLLRKERPDIVHTHTPKPGIL-GRLAAR--LAGVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQ- 145 (359)
T ss_pred HHHHHHHHhcCCCEEEEccccchhH-HHHHHH--HcCCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEc-
Confidence 1111 235799999997643322 222211 02245899999986422111 1223344445
Q ss_pred cccccchhhHHHHHHhh
Q 023401 205 GAMIDSHVTAEYWKNRT 221 (282)
Q Consensus 205 ~~~~dS~Ata~~w~~~~ 221 (282)
|+...++..+..
T Consensus 146 -----s~~~~~~~~~~~ 157 (359)
T cd03808 146 -----NEDDRDLALKLG 157 (359)
T ss_pred -----CHHHHHHHHHhc
Confidence 999998887755
No 27
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.88 E-value=0.014 Score=51.50 Aligned_cols=100 Identities=23% Similarity=0.118 Sum_probs=60.9
Q ss_pred EEEEEeccCC--CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh----------chh
Q 023401 76 LVLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----------GQE 143 (282)
Q Consensus 76 kILLISHELs--~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k----------~~~ 143 (282)
|||.|++... ..|+...+.++++.|.+.|++|.+++...+... .+....++++..-+ ...
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKG--------RDEERNGHRVIRAPSLLNVASTPFSPS 72 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcc--------hhhhccCceEEEeecccccccccccHH
Confidence 5899998876 579999999999999999999999996544311 11112222222110 011
Q ss_pred HHH----HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeec
Q 023401 144 TIN----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEM 187 (282)
Q Consensus 144 ~i~----~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~ 187 (282)
.+. ...++|.|+.++............. ...|.+++.|+.
T Consensus 73 ~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~ 116 (357)
T cd03795 73 FFKQLKKLAKKADVIHLHFPNPLADLALLLLP----RKKPVVVHWHSD 116 (357)
T ss_pred HHHHHHhcCCCCCEEEEecCcchHHHHHHHhc----cCceEEEEEcCh
Confidence 111 2567999999886543222222111 123889999974
No 28
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.81 E-value=0.003 Score=49.07 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=63.6
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh------------hchhHHH-----Hhh
Q 023401 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA------------KGQETIN-----TAL 149 (282)
Q Consensus 87 TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~------------k~~~~i~-----~a~ 149 (282)
+|+.....+|++.|.+.|++|.+++.+.++.. .+....|+++..- +....+. ...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 72 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPED--------DEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRE 72 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG---------SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT-
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcc--------cccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhcc
Confidence 48889999999999999999999995544321 1122234443310 0111222 236
Q ss_pred ccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccc-cc-------------ccccccccccccccccchhhHH
Q 023401 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-FK-------------LDYVKHLPLVAGAMIDSHVTAE 215 (282)
Q Consensus 150 ~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Y-f~-------------l~~vkhL~~v~~~~~dS~Ata~ 215 (282)
++|+|.++...+ .++..+.+.. . ..|+|..+|+....+ .. +++.+++..+ |+.+++
T Consensus 73 ~~Dvv~~~~~~~-~~~~~~~~~~--~-~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~------S~~~~~ 142 (160)
T PF13579_consen 73 RPDVVHAHSPTA-GLVAALARRR--R-GIPLVVTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIVV------SEAMRR 142 (160)
T ss_dssp --SEEEEEHHHH-HHHHHHHHHH--H-T--EEEE-SS-T------HHHHHHHHHHHHHHHH-SEEEES------SHHHHH
T ss_pred CCeEEEecccch-hHHHHHHHHc--c-CCcEEEEECCCchhhccchhhHHHHHHHHHHHhcCCEEEEC------CHHHHH
Confidence 799999999643 3333343211 1 239999999864221 11 3444555555 999999
Q ss_pred HHHHhhh-hhcCCC
Q 023401 216 YWKNRTR-ERLRIK 228 (282)
Q Consensus 216 ~w~~~~~-~~l~Ik 228 (282)
+... .+ ++.+|.
T Consensus 143 ~l~~-~g~~~~ri~ 155 (160)
T PF13579_consen 143 YLRR-YGVPPDRIH 155 (160)
T ss_dssp HHHH-H---GGGEE
T ss_pred HHHH-hCCCCCcEE
Confidence 9888 54 444443
No 29
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=96.77 E-value=0.019 Score=52.34 Aligned_cols=170 Identities=14% Similarity=0.085 Sum_probs=93.6
Q ss_pred EEEEEeccCC---CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh----------ch
Q 023401 76 LVLLVSHELS---LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----------GQ 142 (282)
Q Consensus 76 kILLISHELs---~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k----------~~ 142 (282)
||++|++... ..|+...+.+|++.|++. ++|.+++...+. ....|+++..-+ ..
T Consensus 2 kI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 68 (388)
T TIGR02149 2 KVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQR------------FDSEGLTVKGYRPWSELKEANKAL 68 (388)
T ss_pred eeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCch------------hcCCCeEEEEecChhhccchhhhh
Confidence 6999999886 268889999999999886 566666643221 112234332110 00
Q ss_pred hHHH-------HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecccc-----------ccc--------ccc
Q 023401 143 ETIN-------TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH-----------YFK--------LDY 196 (282)
Q Consensus 143 ~~i~-------~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~-----------Yf~--------l~~ 196 (282)
..+. ...++|+|.+++..++ ++-.+.+. ....|++..+|+..-. |.- +++
T Consensus 69 ~~~~~~~~~~~~~~~~divh~~~~~~~-~~~~~~~~---~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (388)
T TIGR02149 69 GTFSVDLAMANDPVDADVVHSHTWYTF-LAGHLAKK---LYDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEA 144 (388)
T ss_pred hhhhHHHHHhhCCCCCCeEeecchhhh-hHHHHHHH---hcCCCEEEEeecccccccccccccccchhHHHHHHHHHHhh
Confidence 1110 1236999999875332 11111100 0123899999986411 110 233
Q ss_pred cccccccccccccchhhHHHHHHhhhhhcCCCCCCeeEEEecCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEe
Q 023401 197 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 276 (282)
Q Consensus 197 vkhL~~v~~~~~dS~Ata~~w~~~~~~~l~Ikl~~~~vv~L~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~~ 276 (282)
++.++++ |+.++++..+.+. ++...+.+|++-+...+... . ..++..|+++|++++..+|..+
T Consensus 145 ad~vi~~------S~~~~~~~~~~~~---~~~~~~i~vi~ng~~~~~~~----~----~~~~~~~~~~~~~~~~~~i~~~ 207 (388)
T TIGR02149 145 ADRVIAV------SGGMREDILKYYP---DLDPEKVHVIYNGIDTKEYK----P----DDGNVVLDRYGIDRSRPYILFV 207 (388)
T ss_pred CCEEEEc------cHHHHHHHHHHcC---CCCcceEEEecCCCChhhcC----C----CchHHHHHHhCCCCCceEEEEE
Confidence 4445555 9999988877652 12212334455544333222 0 1245578889998888777666
Q ss_pred ccc
Q 023401 277 NRH 279 (282)
Q Consensus 277 ~s~ 279 (282)
...
T Consensus 208 Grl 210 (388)
T TIGR02149 208 GRI 210 (388)
T ss_pred ccc
Confidence 543
No 30
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.45 E-value=0.02 Score=46.51 Aligned_cols=86 Identities=20% Similarity=0.187 Sum_probs=60.6
Q ss_pred EEEEeccCC--CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccCEE
Q 023401 77 VLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (282)
Q Consensus 77 ILLISHELs--~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~DLV 154 (282)
|+++++... ..|+......|++.|++.|++|.++. . +..++ .+.++ ..++|+|
T Consensus 1 i~~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~v~~---~---------~~~~~------------~~~~~-~~~~D~i 55 (229)
T cd01635 1 ILLVSTPLLPGGGGVELVLLDLAKALARRGHEVEVVA---L---------LLLLL------------LRILR-GFKPDVV 55 (229)
T ss_pred CeeeccccCCCCCCchhHHHHHHHHHHHcCCeEEEEE---e---------chHHH------------HHHHh-hcCCCEE
Confidence 567777777 67999999999999999999999998 1 01111 11122 4689999
Q ss_pred EEechhchHHHHHHhhccCCCCCCceEEEeeecccc
Q 023401 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH 190 (282)
Q Consensus 155 IaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~ 190 (282)
+.++.-...+...+.. .....|++.++|+..-.
T Consensus 56 ~~~~~~~~~~~~~~~~---~~~~~~~i~~~h~~~~~ 88 (229)
T cd01635 56 HAHGYYPAPLALLLAA---RLLGIPLVLTVHGVNRS 88 (229)
T ss_pred EEcCCCcHHHHHHHHH---hhCCCCEEEEEcCccHh
Confidence 9999877766541111 12234999999998743
No 31
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.43 E-value=0.018 Score=50.19 Aligned_cols=40 Identities=23% Similarity=0.127 Sum_probs=33.1
Q ss_pred EEEEEeccCCC--CCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 76 kILLISHELs~--TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
||++|++...- +|+...+.+|++.|.+.|++|.+++...+
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 47888866543 69999999999999999999999995544
No 32
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=96.15 E-value=0.14 Score=49.59 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=37.9
Q ss_pred ccccccEEEEEeccC---CCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 70 SFMKSKLVLLVSHEL---SLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 70 ~f~~~KkILLISHEL---s~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
+..+-++|+++.|.. ...|....+.++++.|++.|++|.+++...+
T Consensus 54 ~~~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~ 102 (465)
T PLN02871 54 SRSRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEG 102 (465)
T ss_pred ccCCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 337778999999753 3468889999999999999999999996544
No 33
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.05 E-value=0.09 Score=41.59 Aligned_cols=97 Identities=22% Similarity=0.215 Sum_probs=59.9
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh--------chh--HH
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--------GQE--TI 145 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k--------~~~--~i 145 (282)
|||+|+...+ ...+++++.|++.|++|++++.+++. ++.....|+.+..-+ ..+ ++
T Consensus 1 KIl~i~~~~~-----~~~~~~~~~L~~~g~~V~ii~~~~~~---------~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l 66 (139)
T PF13477_consen 1 KILLIGNTPS-----TFIYNLAKELKKRGYDVHIITPRNDY---------EKYEIIEGIKVIRLPSPRKSPLNYIKYFRL 66 (139)
T ss_pred CEEEEecCcH-----HHHHHHHHHHHHCCCEEEEEEcCCCc---------hhhhHhCCeEEEEecCCCCccHHHHHHHHH
Confidence 5888887764 37889999999999999999974441 111123344333221 111 11
Q ss_pred -H--HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecc
Q 023401 146 -N--TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR 188 (282)
Q Consensus 146 -~--~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r 188 (282)
+ ...++|+|.+++....-.+..+.+ .+ ....|+|+.+|+..
T Consensus 67 ~k~ik~~~~DvIh~h~~~~~~~~~~l~~-~~-~~~~~~i~~~hg~~ 110 (139)
T PF13477_consen 67 RKIIKKEKPDVIHCHTPSPYGLFAMLAK-KL-LKNKKVIYTVHGSD 110 (139)
T ss_pred HHHhccCCCCEEEEecCChHHHHHHHHH-HH-cCCCCEEEEecCCe
Confidence 1 255799999999865444444431 11 11249999999863
No 34
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=96.01 E-value=0.064 Score=49.57 Aligned_cols=133 Identities=8% Similarity=0.089 Sum_probs=73.1
Q ss_pred cEEEEEeccCC-CCCchHHHHHHHHHHHhC--CCeEEEEeccCCCCchhhhhhhHHHHH----HcCCcee--e-hhchhH
Q 023401 75 KLVLLVSHELS-LSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMW----DRGVQVI--S-AKGQET 144 (282)
Q Consensus 75 KkILLISHELs-~TGAPLlLleLA~~Lkq~--G~~V~vL~~~~G~~~~~v~~~L~~kll----~rgI~v~--~-~k~~~~ 144 (282)
.||+++++-.+ ..|+.-.++++++.|.+. |++|.+++..++...... +.+. ...+++. . ......
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWL-----KEIKYAQSFSNIKLSFLRRAKHVYN 75 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHH-----HhcchhcccccchhhhhcccHHHHH
Confidence 37888888664 478889999999999999 899998885544211111 1110 0001110 0 001111
Q ss_pred HH---HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecc---ccccc--ccccccccccccccccchhhHHH
Q 023401 145 IN---TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR---GHYFK--LDYVKHLPLVAGAMIDSHVTAEY 216 (282)
Q Consensus 145 i~---~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r---~~Yf~--l~~vkhL~~v~~~~~dS~Ata~~ 216 (282)
+. ...++|+|++++..+..|.. +.+... ....++++|.|=.. ..|.. +.+.+.+..+ |+++.++
T Consensus 76 l~~~l~~~~~Dii~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~------S~~~~~~ 147 (359)
T PRK09922 76 FSKWLKETQPDIVICIDVISCLYAN-KARKKS-GKQFKIFSWPHFSLDHKKHAECKKITCADYHLAI------SSGIKEQ 147 (359)
T ss_pred HHHHHHhcCCCEEEEcCHHHHHHHH-HHHHHh-CCCCeEEEEecCcccccchhhhhhhhcCCEEEEc------CHHHHHH
Confidence 11 35679999999876554333 222211 11126788888322 11111 2334445555 9999888
Q ss_pred HHHh
Q 023401 217 WKNR 220 (282)
Q Consensus 217 w~~~ 220 (282)
..+.
T Consensus 148 ~~~~ 151 (359)
T PRK09922 148 MMAR 151 (359)
T ss_pred HHHc
Confidence 7643
No 35
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=95.75 E-value=0.13 Score=47.65 Aligned_cols=166 Identities=17% Similarity=0.139 Sum_probs=89.7
Q ss_pred CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh-----h--ch------------hHHH
Q 023401 86 LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-----K--GQ------------ETIN 146 (282)
Q Consensus 86 ~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~-----k--~~------------~~i~ 146 (282)
..|+.....+||+.|.+.|++|.+++...+...++. .-...|+.+..- . .. ..+.
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPV------VEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLR 92 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCc------cccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 358889999999999999999999995433211111 001123333311 0 00 0111
Q ss_pred -----HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecc---ccccc-----------------cccccccc
Q 023401 147 -----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR---GHYFK-----------------LDYVKHLP 201 (282)
Q Consensus 147 -----~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r---~~Yf~-----------------l~~vkhL~ 201 (282)
...++|+|.++.... .++..+.+.. . ..|+|.-+|... ..|.. +++...
T Consensus 93 ~~~~~~~~~~Diih~h~~~~-~~~~~~~~~~--~-~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~-- 166 (405)
T TIGR03449 93 AEARHEPGYYDLIHSHYWLS-GQVGWLLRDR--W-GVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADR-- 166 (405)
T ss_pred HHhhccCCCCCeEEechHHH-HHHHHHHHHh--c-CCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCe--
Confidence 123699998887443 2222222111 1 128888889753 11110 112222
Q ss_pred ccccccccchhhHHHHHHhhh-hhcCCCCCCeeEEEecCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecccc
Q 023401 202 LVAGAMIDSHVTAEYWKNRTR-ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINRHR 280 (282)
Q Consensus 202 ~v~~~~~dS~Ata~~w~~~~~-~~l~Ikl~~~~vv~L~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~~~s~~ 280 (282)
+.+-|+..++++...++ +.. +.++++-|.+.+... . ..++..|+++|+++++.+|+...++.
T Consensus 167 ----vi~~s~~~~~~~~~~~~~~~~-----ki~vi~ngvd~~~~~----~----~~~~~~~~~~~~~~~~~~i~~~G~l~ 229 (405)
T TIGR03449 167 ----LIANTDEEARDLVRHYDADPD-----RIDVVAPGADLERFR----P----GDRATERARLGLPLDTKVVAFVGRIQ 229 (405)
T ss_pred ----EEECCHHHHHHHHHHcCCChh-----hEEEECCCcCHHHcC----C----CcHHHHHHhcCCCCCCcEEEEecCCC
Confidence 34448888888776654 222 233466665433222 0 13455678899999888887776553
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=95.74 E-value=0.22 Score=46.30 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=32.6
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
+-|+||++|-.. ..|-.-....|+..|++.|++++++..
T Consensus 3 ~~~rili~t~~~-G~GH~~~a~al~~~l~~~g~~~~~~~d 41 (380)
T PRK13609 3 KNPKVLILTAHY-GNGHVQVAKTLEQTFRQKGIKDVIVCD 41 (380)
T ss_pred CCCeEEEEEcCC-CchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 457899999776 558888999999999999999888873
No 37
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.54 E-value=0.32 Score=43.95 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=25.1
Q ss_pred CCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 85 SLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 85 s~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
+..|+=..+.++|+.|.+.|++|.++++..+
T Consensus 8 ~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~ 38 (350)
T cd03785 8 GTGGHIFPALALAEELRERGAEVLFLGTKRG 38 (350)
T ss_pred CchhhhhHHHHHHHHHHhCCCEEEEEECCCc
Confidence 3346666778999999999999999996544
No 38
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=95.52 E-value=0.22 Score=45.73 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=31.9
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~ 114 (282)
+||++++...+ |+=..+++|++.|++.|++|.+++..+
T Consensus 2 ~~i~i~~~g~g--G~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTG--GHVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcch--HhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 56888887654 777788999999999999999999644
No 39
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=95.41 E-value=0.45 Score=41.94 Aligned_cols=130 Identities=9% Similarity=-0.005 Sum_probs=73.8
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee-h------hchhHH-H-
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-A------KGQETI-N- 146 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~-~------k~~~~i-~- 146 (282)
||++++...-. |++..+.+++..|.+.|++|.+++..++..... .++....+..+.. . .....+ .
T Consensus 1 ki~~~~~~~~~-~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (355)
T cd03799 1 KIAYLVKEFPR-LSETFILREILALEAAGHEVEIFSLRPPEDTLV-----HPEDRAELARTRYLARSLALLAQALVLARE 74 (355)
T ss_pred CEEEECCCCCC-cchHHHHHHHHHHHhCCCeEEEEEecCcccccc-----cccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 47888877643 488899999999999999999999554431100 0111111000000 0 000011 1
Q ss_pred -HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc--------ccccccccccccccccchhhHHHH
Q 023401 147 -TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK--------LDYVKHLPLVAGAMIDSHVTAEYW 217 (282)
Q Consensus 147 -~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~--------l~~vkhL~~v~~~~~dS~Ata~~w 217 (282)
...++|+|.+++......+..+.+... ..|+++.+|.....+.. +++.+++.++ |+..++++
T Consensus 75 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~------s~~~~~~l 145 (355)
T cd03799 75 LRRLGIDHIHAHFGTTPATVAMLASRLG---GIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAI------SEYNRQQL 145 (355)
T ss_pred HHhcCCCEEEECCCCchHHHHHHHHHhc---CCCEEEEEecccccccCchHHHHHHHhhCCEEEEC------CHHHHHHH
Confidence 136799999987754444433331111 23888888864422111 3344555555 99999999
Q ss_pred HHh
Q 023401 218 KNR 220 (282)
Q Consensus 218 ~~~ 220 (282)
++.
T Consensus 146 ~~~ 148 (355)
T cd03799 146 IRL 148 (355)
T ss_pred HHh
Confidence 886
No 40
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=95.40 E-value=0.52 Score=45.13 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=31.3
Q ss_pred EEEEEeccCCC---C-CchHHHHHHHHHHHhCCCeEEEEec
Q 023401 76 LVLLVSHELSL---S-GGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 76 kILLISHELs~---T-GAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
+||+||=|..- + |---+.-+|++.|.+.|++|.+++-
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p 41 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMP 41 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 58999988543 4 7778889999999999999999993
No 41
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=94.92 E-value=0.24 Score=46.43 Aligned_cols=40 Identities=28% Similarity=0.174 Sum_probs=32.7
Q ss_pred EEEEEeccCC--CCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 76 LVLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 76 kILLISHELs--~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
||++|++-.. ..|+.....+|++.|.+.|++|.+++...+
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~ 42 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYG 42 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCC
Confidence 5788887444 357789999999999999999999996544
No 42
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=94.60 E-value=0.9 Score=42.95 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=86.9
Q ss_pred CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-----CCceee--------------hhchhHH-
Q 023401 86 LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-----GVQVIS--------------AKGQETI- 145 (282)
Q Consensus 86 ~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r-----gI~v~~--------------~k~~~~i- 145 (282)
-.|+..-+.+++++|.. +|.|++.+.++..+. +...- +++... -.+...+
T Consensus 20 ~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (380)
T PRK15484 20 AAAVETWIYQVAKRTSI---PNRIACIKNPGYPEY-------TKVNDNCDIHYIGFSRIYKRLFQKWTRLDPLPYSQRIL 89 (380)
T ss_pred ccHHHHHHHHhhhhccC---CeeEEEecCCCCCch-------hhccCCCceEEEEeccccchhhhhhhccCchhHHHHHH
Confidence 45899999999999954 999999766531111 11111 111101 0111111
Q ss_pred HH-----hhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecccccccccccccccccccccccchhhHHHHHHh
Q 023401 146 NT-----ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNR 220 (282)
Q Consensus 146 ~~-----a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~l~~vkhL~~v~~~~~dS~Ata~~w~~~ 220 (282)
.. ..+.|+|.+++.. .++..+. ...| ..|++.++|+....+ .++...+++++ |+.+.+++...
T Consensus 90 ~~~~~~~~~~~~vi~v~~~~--~~~~~~~-~~~~--~~~~v~~~h~~~~~~-~~~~~~~ii~~------S~~~~~~~~~~ 157 (380)
T PRK15484 90 NIAHKFTITKDSVIVIHNSM--KLYRQIR-ERAP--QAKLVMHMHNAFEPE-LLDKNAKIIVP------SQFLKKFYEER 157 (380)
T ss_pred HHHHhcCCCCCcEEEEeCcH--HhHHHHH-hhCC--CCCEEEEEecccChh-HhccCCEEEEc------CHHHHHHHHhh
Confidence 11 2458999887743 3444343 2221 238889999853110 13455667777 99999888765
Q ss_pred hhhhcCCCCCCeeEEEecCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecc
Q 023401 221 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINR 278 (282)
Q Consensus 221 ~~~~l~Ikl~~~~vv~L~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~~~s 278 (282)
... . +..|++-|...+... . ..++..|+.+|+++++.+|.....
T Consensus 158 ~~~-~-----~i~vIpngvd~~~~~----~----~~~~~~~~~~~~~~~~~~il~~Gr 201 (380)
T PRK15484 158 LPN-A-----DISIVPNGFCLETYQ----S----NPQPNLRQQLNISPDETVLLYAGR 201 (380)
T ss_pred CCC-C-----CEEEecCCCCHHHcC----C----cchHHHHHHhCCCCCCeEEEEecc
Confidence 422 1 234566665433222 0 123456778999888877665443
No 43
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.56 E-value=0.58 Score=49.36 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=45.5
Q ss_pred CccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCC------------eEEEEec----cCCCCchhhhhhhHHHHH
Q 023401 67 SPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGT------------KVNWITI----QKPSEEDEVIYSLEHKMW 130 (282)
Q Consensus 67 ~~~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~------------~V~vL~~----~~G~~~~~v~~~L~~kll 130 (282)
.|..++ | +|++|.|.+...||..++++||..|.+.|. +|.+++. ..|+ + ++...+.
T Consensus 276 ~~~~~~-~-rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~--~----~~~~~L~ 347 (694)
T PRK15179 276 GPESFV-G-PVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGA--D----FFAATLA 347 (694)
T ss_pred CCCCCc-c-eEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCc--c----hHHHHHH
Confidence 355555 1 499999999999999999999999999865 3333332 3332 1 3456787
Q ss_pred HcCCcee
Q 023401 131 DRGVQVI 137 (282)
Q Consensus 131 ~rgI~v~ 137 (282)
+.|++|.
T Consensus 348 ~~Gv~v~ 354 (694)
T PRK15179 348 DAGIPVS 354 (694)
T ss_pred hCCCeEE
Confidence 8888877
No 44
>PRK00654 glgA glycogen synthase; Provisional
Probab=94.49 E-value=1.2 Score=43.58 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=31.3
Q ss_pred EEEEEeccCC----CCCchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 76 LVLLVSHELS----LSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 76 kILLISHELs----~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
+|++||=|.. ..|-=-+.-+|++.|.+.|++|.+++-.
T Consensus 2 ~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 2 KILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred eEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 6999998843 2366678999999999999999999943
No 45
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=94.09 E-value=0.51 Score=45.24 Aligned_cols=125 Identities=14% Similarity=0.068 Sum_probs=71.2
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchh---------
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE--------- 143 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~--------- 143 (282)
|-|+|..++- .+-|+-.=+.++|+.|.+.|++|.+++..++.. .++.....|+.+..-....
T Consensus 2 ~~~~~~~~~~--~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 72 (415)
T cd03816 2 KRKRVCVLVL--GDIGRSPRMQYHALSLAKHGWKVDLVGYLETPP-------HDEILSNPNITIHPLPPPPQRLNKLPFL 72 (415)
T ss_pred CccEEEEEEe--cccCCCHHHHHHHHHHHhcCceEEEEEecCCCC-------CHHHhcCCCEEEEECCCCccccccchHH
Confidence 3466666664 223443445889999999999999999554321 1222445566665332110
Q ss_pred ------HH----H------HhhccCEEEEec------hhchHHHHHHhhccCCCCCCceEEEeeeccc----------c-
Q 023401 144 ------TI----N------TALKADLIVLNT------AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG----------H- 190 (282)
Q Consensus 144 ------~i----~------~a~~~DLVIaNT------~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~----------~- 190 (282)
.+ . ...++|+|++.+ +..+.+...+ .+ .|+|-.+|+... .
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~--~~-----~~~V~~~h~~~~~~~~~~~~~~~~ 145 (415)
T cd03816 73 LFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLL--RR-----TKLIIDWHNYGYTILALKLGENHP 145 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH--hC-----CeEEEEcCCchHHHHhcccCCCCH
Confidence 00 0 124699999854 2223333322 12 278888888521 0
Q ss_pred ---ccc------ccccccccccccccccchhhHHHHHH
Q 023401 191 ---YFK------LDYVKHLPLVAGAMIDSHVTAEYWKN 219 (282)
Q Consensus 191 ---Yf~------l~~vkhL~~v~~~~~dS~Ata~~w~~ 219 (282)
++. .++.++++.+ |+.+.++..+
T Consensus 146 ~~~~~~~~e~~~~~~ad~ii~v------S~~~~~~l~~ 177 (415)
T cd03816 146 LVRLAKWYEKLFGRLADYNLCV------TKAMKEDLQQ 177 (415)
T ss_pred HHHHHHHHHHHHhhcCCEeeec------CHHHHHHHHh
Confidence 000 2446677777 9999998865
No 46
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=93.97 E-value=0.85 Score=41.17 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=28.3
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
||+++.=+.+ |.=....+||+.|++.|++|.++++.++
T Consensus 2 ~i~~~~g~~~--g~~~~~~~La~~L~~~g~eV~vv~~~~~ 39 (348)
T TIGR01133 2 KVVLAAGGTG--GHIFPALAVAEELIKRGVEVLWLGTKRG 39 (348)
T ss_pred eEEEEeCccH--HHHhHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 5777765554 4433667999999999999999985433
No 47
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=93.16 E-value=0.48 Score=44.34 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=27.8
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (282)
+||||...+- +| .-+||+.|.+.|++|++++.++..
T Consensus 1 ~il~~~~~~p---~~--~~~la~~L~~~G~~v~~~~~~~~~ 36 (396)
T cd03818 1 RILFVHQNFP---GQ--FRHLAPALAAQGHEVVFLTEPNAA 36 (396)
T ss_pred CEEEECCCCc---hh--HHHHHHHHHHCCCEEEEEecCCCC
Confidence 4777776654 23 568999999999999999966554
No 48
>PRK10125 putative glycosyl transferase; Provisional
Probab=92.97 E-value=0.87 Score=44.10 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=38.0
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (282)
.|||.|.=-++..||=-++++|+..|.+.|++|.++.+++..
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~ 42 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKG 42 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCC
Confidence 379999999999999999999999999999999999976553
No 49
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=92.28 E-value=0.8 Score=44.37 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=63.6
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (282)
....+||+|.+.. .|-....+++.|.+.|.+|+.+....+. .+......+. +..++.+.++.....+.
T Consensus 271 ~~~l~Gkrv~i~g-------~~~~~~~la~~L~elGm~vv~~~t~~~~--~~~~~~~~~~-l~~~~~v~~~~d~~~l~~~ 340 (396)
T cd01979 271 LDLLRGKSIFFMG-------DNLLEIPLARFLTRCGMIVVEVGTPYLD--KRFQAAELEL-LPPMVRIVEKPDNYRQLDR 340 (396)
T ss_pred HHhhcCCEEEEEC-------CchHHHHHHHHHHHCCCEEEeeCCCcCC--hHHHHHHHHh-cCCCCeEEECCCHHHHHHH
Confidence 3456899997754 4668899999999999999988644332 1111111122 22467776654443332
Q ss_pred -HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecc
Q 023401 147 -TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR 188 (282)
Q Consensus 147 -~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r 188 (282)
...++|++|.|.-.+.+ +.+..| |+.|.+.-.+
T Consensus 341 i~~~~pDlli~~~~~a~p----l~r~G~-----P~~dr~~~~~ 374 (396)
T cd01979 341 IRELRPDLVVTGLGLANP----LEARGI-----TTKWSIEFTF 374 (396)
T ss_pred HHhcCCCEEEecccccCc----HHhCCC-----cceeecceee
Confidence 35689999999554432 223444 9999987655
No 50
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=92.01 E-value=4.5 Score=39.25 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=30.9
Q ss_pred EEEEEeccCCC---C-CchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 76 LVLLVSHELSL---S-GGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 76 kILLISHELs~---T-GAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
+|++||=|..- + |-=-+.-+|++.|.+.|++|.+++-.
T Consensus 2 ~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~ 43 (473)
T TIGR02095 2 RVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPA 43 (473)
T ss_pred eEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 69999999433 4 55567889999999999999999843
No 51
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=91.84 E-value=0.85 Score=44.56 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=54.6
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (282)
..+.+||++.+.. .|-....+++.|.+.|.+++......+. .+......+.+ ..+..+..+.....+.
T Consensus 269 ~~~l~Gkrv~i~g-------d~~~~~~l~~~L~elGm~~v~~~t~~~~--~~~~~~~~~~l-~~~~~v~~~~d~~~l~~~ 338 (407)
T TIGR01279 269 TQLLRGKKIFFFG-------DNLLELPLARFLKRCGMEVVECGTPYIH--RRFHAAELALL-EGGVRIVEQPDFHRQLQR 338 (407)
T ss_pred HHhcCCCEEEEEC-------CchHHHHHHHHHHHCCCEEEEecCCCCC--hHHHHHHHhhc-CCCCeEEeCCCHHHHHHH
Confidence 3467899988864 4678999999999999999888755442 11111111222 2256676654444332
Q ss_pred -HhhccCEEEEechhchH
Q 023401 147 -TALKADLIVLNTAVAGK 163 (282)
Q Consensus 147 -~a~~~DLVIaNT~v~g~ 163 (282)
...++||+|.|+....+
T Consensus 339 i~~~~pDllig~~~~~~p 356 (407)
T TIGR01279 339 IRATRPDLVVTGLGTANP 356 (407)
T ss_pred HHhcCCCEEecCccCCCc
Confidence 35689999999944333
No 52
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=91.56 E-value=3.2 Score=37.24 Aligned_cols=96 Identities=11% Similarity=0.044 Sum_probs=53.0
Q ss_pred EeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee-----------------ehhch
Q 023401 80 VSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI-----------------SAKGQ 142 (282)
Q Consensus 80 ISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~-----------------~~k~~ 142 (282)
+-.+....+....+.+++..|. |+++++++++.++..... ....++..+ ..+..
T Consensus 4 ~~~~~~~~~~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (367)
T cd05844 4 IFRPLLLAPSETFVRNQAEALR--RFRPVYVGGRRLGPAPLG-------ALAVRLADLAGGKAGLRLGALRLLTGSAPQL 74 (367)
T ss_pred EEeCCCCCCchHHHHHHHHhcc--cCCcEEEEeeccCCCCCc-------ccceeeeecccchhHHHHHHHHhccccccHH
Confidence 3345555568889999999995 778888886555421110 000111111 11111
Q ss_pred hHHHHhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecc
Q 023401 143 ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR 188 (282)
Q Consensus 143 ~~i~~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r 188 (282)
..+-...++|+|.++....+.+.-.+.+.. ..|+++++|+..
T Consensus 75 ~~~~~~~~~dvvh~~~~~~~~~~~~~~~~~----~~p~i~~~h~~~ 116 (367)
T cd05844 75 RRLLRRHRPDLVHAHFGFDGVYALPLARRL----GVPLVVTFHGFD 116 (367)
T ss_pred HHHHHhhCCCEEEeccCchHHHHHHHHHHc----CCCEEEEEeCcc
Confidence 121225679999998665444444333221 129999999754
No 53
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=91.54 E-value=0.73 Score=46.61 Aligned_cols=82 Identities=21% Similarity=0.188 Sum_probs=52.7
Q ss_pred ccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhh---hhHHHHH-Hc---CCceeehh
Q 023401 68 PLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY---SLEHKMW-DR---GVQVISAK 140 (282)
Q Consensus 68 ~~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~---~L~~kll-~r---gI~v~~~k 140 (282)
-..+.+||++. .+|.|-....|++.|.++|.+++.+....+. .+... .+.+++. +. +..++++.
T Consensus 308 ~~~~L~GKrva-------i~Gdp~~~i~LarfL~elGmevV~vgt~~~~--~~~~~~d~~~l~~~~~~~~~~~~vive~~ 378 (457)
T CHL00073 308 YLDLVRGKSVF-------FMGDNLLEISLARFLIRCGMIVYEIGIPYMD--KRYQAAELALLEDTCRKMNVPMPRIVEKP 378 (457)
T ss_pred HHHHHCCCEEE-------EECCCcHHHHHHHHHHHCCCEEEEEEeCCCC--hhhhHHHHHHHHHHhhhcCCCCcEEEeCC
Confidence 44578999995 4588889999999999999999998866553 12111 1222222 23 33345543
Q ss_pred chhHHH---HhhccCEEEEec
Q 023401 141 GQETIN---TALKADLIVLNT 158 (282)
Q Consensus 141 ~~~~i~---~a~~~DLVIaNT 158 (282)
....+. ...++||+|.|.
T Consensus 379 D~~el~~~i~~~~pDLlIgG~ 399 (457)
T CHL00073 379 DNYNQIQRIRELQPDLAITGM 399 (457)
T ss_pred CHHHHHHHHhhCCCCEEEccc
Confidence 333322 356899999994
No 54
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=90.46 E-value=1.5 Score=43.16 Aligned_cols=82 Identities=21% Similarity=0.279 Sum_probs=53.7
Q ss_pred ccccccccEEEEEeccCCCCCchHHHHHHHHHHHh-CCCeEEEEeccCCCCchhhhhhhHHHHH--HcCCceeehhchhH
Q 023401 68 PLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQKPSEEDEVIYSLEHKMW--DRGVQVISAKGQET 144 (282)
Q Consensus 68 ~~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq-~G~~V~vL~~~~G~~~~~v~~~L~~kll--~rgI~v~~~k~~~~ 144 (282)
-..+.+||++.+. |.|-....+++.|.+ .|.+++.+....+. .+. .++.+. ..++.+..+.....
T Consensus 284 ~~~~l~Gkrvai~-------g~~~~~~~la~~L~eelGm~~v~v~t~~~~--~~~---~~~~~~~l~~~~~v~~~~D~~~ 351 (427)
T PRK02842 284 YRELLRGKRVFFL-------PDSQLEIPLARFLSRECGMELVEVGTPYLN--RRF---LAAELALLPDGVRIVEGQDVER 351 (427)
T ss_pred hhhhcCCcEEEEE-------CCchhHHHHHHHHHHhCCCEEEEeCCCCCC--HHH---HHHHHHhccCCCEEEECCCHHH
Confidence 3456799999775 456688899999998 99999888854442 111 122221 23777776644433
Q ss_pred HH---HhhccCEEEEechhc
Q 023401 145 IN---TALKADLIVLNTAVA 161 (282)
Q Consensus 145 i~---~a~~~DLVIaNT~v~ 161 (282)
+. ...++|++|.|+-.+
T Consensus 352 l~~~i~~~~pDllig~~~~~ 371 (427)
T PRK02842 352 QLDRIRALRPDLVVCGLGLA 371 (427)
T ss_pred HHHHHHHcCCCEEEccCccC
Confidence 32 346899999998443
No 55
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=90.28 E-value=0.8 Score=42.99 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=29.8
Q ss_pred EEEEeccCCC---CCchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 77 VLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 77 ILLISHELs~---TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
||++||..=. +|+.+-.+++++.|.+ .++|.+++-.
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~-~~~v~l~~~~ 39 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAA-RHRVHLGTFV 39 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHh-cCcEEEEEeC
Confidence 5788887644 4999999999999976 5899999944
No 56
>PRK14099 glycogen synthase; Provisional
Probab=90.28 E-value=5.7 Score=39.65 Aligned_cols=40 Identities=25% Similarity=0.214 Sum_probs=32.4
Q ss_pred ccccEEEEEeccCC---CC-CchHHHHHHHHHHHhCCCeEEEEe
Q 023401 72 MKSKLVLLVSHELS---LS-GGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 72 ~~~KkILLISHELs---~T-GAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
|++.+||+||=|.. -| |===++-.|.+.|++.|++|.++.
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~ 44 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLV 44 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEe
Confidence 67899999999973 33 333478889999999999998877
No 57
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.71 E-value=1.7 Score=42.97 Aligned_cols=86 Identities=13% Similarity=0.197 Sum_probs=52.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhchhHHHHhh
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKGQETINTAL 149 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r--gI~v~~~k~~~~i~~a~ 149 (282)
+++|+|+++. ++.+| |.+|++|++.|++|...=.+.- . +..+++.+. |+++....+... ...
T Consensus 5 ~~~~~i~v~G--~G~sG-----~s~a~~L~~~G~~v~~~D~~~~---~----~~~~~L~~~~~~~~~~~g~~~~~--~~~ 68 (498)
T PRK02006 5 LQGPMVLVLG--LGESG-----LAMARWCARHGARLRVADTREA---P----PNLAALRAELPDAEFVGGPFDPA--LLD 68 (498)
T ss_pred cCCCEEEEEe--ecHhH-----HHHHHHHHHCCCEEEEEcCCCC---c----hhHHHHHhhcCCcEEEeCCCchh--Hhc
Confidence 4588999998 67777 3489999999999865322211 1 112345455 455543322221 235
Q ss_pred ccCEEEEechhch------HHHHHHhhccC
Q 023401 150 KADLIVLNTAVAG------KWLDAVLKEDV 173 (282)
Q Consensus 150 ~~DLVIaNT~v~g------~wl~~l~~~~~ 173 (282)
++|+||....+.- +.+.+..+.+.
T Consensus 69 ~~d~vv~sp~I~~~~~~~~~~~~~a~~~~i 98 (498)
T PRK02006 69 GVDLVALSPGLSPLEAALAPLVAAARERGI 98 (498)
T ss_pred CCCEEEECCCCCCcccccCHHHHHHHHCCC
Confidence 7999999988754 66666654454
No 58
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.75 E-value=2.6 Score=41.29 Aligned_cols=86 Identities=22% Similarity=0.304 Sum_probs=56.4
Q ss_pred ccccccEEEEEeccCCCCCchHHHHH-HHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHh
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLME-LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLle-LA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a 148 (282)
++.++|+|++|+ ++.+| |. +|++|++.|++|.+.=.+ .. . ..+++.+.|+.+....... ..
T Consensus 3 ~~~~~~~v~viG--~G~sG-----~s~~a~~L~~~G~~V~~~D~~-~~--~-----~~~~l~~~gi~~~~~~~~~---~~ 64 (461)
T PRK00421 3 ELRRIKRIHFVG--IGGIG-----MSGLAEVLLNLGYKVSGSDLK-ES--A-----VTQRLLELGAIIFIGHDAE---NI 64 (461)
T ss_pred CcCCCCEEEEEE--Echhh-----HHHHHHHHHhCCCeEEEECCC-CC--h-----HHHHHHHCCCEEeCCCCHH---HC
Confidence 567888999986 44455 66 799999999998653222 21 1 1345667799887532222 23
Q ss_pred hccCEEEEechhc--hHHHHHHhhccC
Q 023401 149 LKADLIVLNTAVA--GKWLDAVLKEDV 173 (282)
Q Consensus 149 ~~~DLVIaNT~v~--g~wl~~l~~~~~ 173 (282)
.++|+||....+. .+.+....+.+.
T Consensus 65 ~~~d~vv~spgi~~~~~~~~~a~~~~i 91 (461)
T PRK00421 65 KDADVVVYSSAIPDDNPELVAARELGI 91 (461)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 5799999999886 346666554444
No 59
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=87.26 E-value=2.2 Score=38.66 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=21.8
Q ss_pred EEEEeccCC--CCCchHHHHHHHHHHHhCCCeEE
Q 023401 77 VLLVSHELS--LSGGPLLLMELAFLLRGVGTKVN 108 (282)
Q Consensus 77 ILLISHELs--~TGAPLlLleLA~~Lkq~G~~V~ 108 (282)
|. |.|+.. ..||--++.+||+.|.+.+..+.
T Consensus 2 i~-~~~~~~~~~GG~E~~~~~l~~~l~~~~v~~~ 34 (351)
T cd03804 2 VA-IVHDWLVNIGGGEKVVEALARLFPDADIFTL 34 (351)
T ss_pred EE-EEEeccccCCCHHHHHHHHHHhCCCCCEEEE
Confidence 44 344443 46999999999999987554443
No 60
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.87 E-value=2.4 Score=41.47 Aligned_cols=76 Identities=18% Similarity=0.109 Sum_probs=52.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhcc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~ 151 (282)
.++|+|++|+ |++ .=|++|+.|++.|.+|.+.-.++. +....+.+++.++|+++....... ....+
T Consensus 14 ~~~~~v~viG------~G~-~G~~~A~~L~~~G~~V~~~d~~~~----~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~ 79 (480)
T PRK01438 14 WQGLRVVVAG------LGV-SGFAAADALLELGARVTVVDDGDD----ERHRALAAILEALGATVRLGPGPT---LPEDT 79 (480)
T ss_pred cCCCEEEEEC------CCH-HHHHHHHHHHHCCCEEEEEeCCch----hhhHHHHHHHHHcCCEEEECCCcc---ccCCC
Confidence 5788999984 333 344689999999999887643322 122235677888899998654333 24569
Q ss_pred CEEEEechhc
Q 023401 152 DLIVLNTAVA 161 (282)
Q Consensus 152 DLVIaNT~v~ 161 (282)
|+||..+.+.
T Consensus 80 D~Vv~s~Gi~ 89 (480)
T PRK01438 80 DLVVTSPGWR 89 (480)
T ss_pred CEEEECCCcC
Confidence 9999998874
No 61
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=86.86 E-value=3.3 Score=39.44 Aligned_cols=111 Identities=23% Similarity=0.237 Sum_probs=63.9
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH---
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN--- 146 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~--- 146 (282)
+...||+|++. |.|-..+.|++.|.+.|.++..+........+. .-+...+.+....|+.......+.
T Consensus 267 ~~l~g~~v~i~-------~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~--e~~~~~~~~~~~~v~~~~~~~~~~~~l 337 (398)
T PF00148_consen 267 ERLGGKRVAIY-------GDPDRALGLARFLEELGMEVVAVGCDDKSPEDE--ERLRWLLEESDPEVIIDPDPEEIEELL 337 (398)
T ss_dssp HHHTT-EEEEE-------SSHHHHHHHHHHHHHTT-EEEEEEESSGGHHHH--HHHHHHHHTTCSEEEESCBHHHHHHHH
T ss_pred HhhcCceEEEE-------cCchhHHHHHHHHHHcCCeEEEEEEccCchhHH--HHHHHHhhCCCcEEEeCCCHHHHHHHH
Confidence 45669998874 456788899999999999999998665532111 111222222235666654444443
Q ss_pred HhhccCEEEEechhchHHHHHHhhccCCCC--CCceEEEeeeccccccc
Q 023401 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRV--LPNVLWWIHEMRGHYFK 193 (282)
Q Consensus 147 ~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~--~~pVIWWIHE~r~~Yf~ 193 (282)
...+.|+++.++- ...+-+.+ +.|.. ..|+.+.++.....|..
T Consensus 338 ~~~~pdl~ig~~~-~~~~a~~~---~~~~~~~~~P~~~~~~~~~~~~~G 382 (398)
T PF00148_consen 338 EELKPDLLIGSSH-ERYLAKKL---GIPLIRIGFPVFDRISLTYRPYMG 382 (398)
T ss_dssp HHHT-SEEEESHH-HHHHHHHT---T--EEE-SSSEEESSSGGGS-SSH
T ss_pred HhcCCCEEEechh-hHHHHHHh---CCCeEEEeCCeeeeecCCCCCcEe
Confidence 3456999999988 44444433 22332 33888888765444443
No 62
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.49 E-value=3.9 Score=40.14 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=61.0
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHh
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a 148 (282)
..|.++|+|+++. ++++| +.+|++|++.|++|.+.=.+..+ ..+.+.+++.+.|+.+....... +..
T Consensus 9 ~~~~~~~~i~v~G--~G~sG-----~a~a~~L~~~G~~V~~~D~~~~~----~~~~~~~~l~~~gi~~~~~~~~~--~~~ 75 (458)
T PRK01710 9 KKFIKNKKVAVVG--IGVSN-----IPLIKFLVKLGAKVTAFDKKSEE----ELGEVSNELKELGVKLVLGENYL--DKL 75 (458)
T ss_pred hhhhcCCeEEEEc--ccHHH-----HHHHHHHHHCCCEEEEECCCCCc----cchHHHHHHHhCCCEEEeCCCCh--HHh
Confidence 3567789999986 45666 37788999999988764322211 11233456777899887653221 123
Q ss_pred hccCEEEEechhc--hHHHHHHhhccCCCCCCceEE
Q 023401 149 LKADLIVLNTAVA--GKWLDAVLKEDVPRVLPNVLW 182 (282)
Q Consensus 149 ~~~DLVIaNT~v~--g~wl~~l~~~~~~~~~~pVIW 182 (282)
.++|+||....+. .+.+....+.+. ||+.
T Consensus 76 ~~~dlVV~Spgi~~~~p~~~~a~~~~i-----~i~s 106 (458)
T PRK01710 76 DGFDVIFKTPSMRIDSPELVKAKEEGA-----YITS 106 (458)
T ss_pred ccCCEEEECCCCCCCchHHHHHHHcCC-----cEEe
Confidence 6799999987765 455665554444 6653
No 63
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=86.29 E-value=7.8 Score=35.83 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=26.5
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
||+++. +.||+=+..-.+++.|++.+.++.++..
T Consensus 3 ki~i~~---Ggt~G~i~~a~l~~~L~~~~~~~~~~~~ 36 (380)
T PRK00025 3 RIAIVA---GEVSGDLLGAGLIRALKARAPNLEFVGV 36 (380)
T ss_pred eEEEEe---cCcCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 566664 5577878777799999998888888874
No 64
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.13 E-value=7.6 Score=37.46 Aligned_cols=85 Identities=24% Similarity=0.285 Sum_probs=53.7
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhcc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~ 151 (282)
+++|+|+++. |+++- +.+|+.|.+.|++|.+.-.+ . ... .....+++.+.|+.++....... ....+
T Consensus 3 ~~~k~v~iiG------~g~~G-~~~A~~l~~~G~~V~~~d~~-~--~~~-~~~~~~~l~~~~~~~~~~~~~~~--~~~~~ 69 (450)
T PRK14106 3 LKGKKVLVVG------AGVSG-LALAKFLKKLGAKVILTDEK-E--EDQ-LKEALEELGELGIELVLGEYPEE--FLEGV 69 (450)
T ss_pred cCCCEEEEEC------CCHHH-HHHHHHHHHCCCEEEEEeCC-c--hHH-HHHHHHHHHhcCCEEEeCCcchh--HhhcC
Confidence 5789998874 44444 59999999999999877532 2 111 22333555566888765432222 24679
Q ss_pred CEEEEechhc--hHHHHHHh
Q 023401 152 DLIVLNTAVA--GKWLDAVL 169 (282)
Q Consensus 152 DLVIaNT~v~--g~wl~~l~ 169 (282)
|+||.|+.+. .+++.+..
T Consensus 70 d~vv~~~g~~~~~~~~~~a~ 89 (450)
T PRK14106 70 DLVVVSPGVPLDSPPVVQAH 89 (450)
T ss_pred CEEEECCCCCCCCHHHHHHH
Confidence 9999999853 44444443
No 65
>PLN02316 synthase/transferase
Probab=86.05 E-value=11 Score=42.04 Aligned_cols=193 Identities=16% Similarity=0.164 Sum_probs=101.8
Q ss_pred cEEEEEeccCCC---C-CchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHH--HH--HH----------cCCce
Q 023401 75 KLVLLVSHELSL---S-GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH--KM--WD----------RGVQV 136 (282)
Q Consensus 75 KkILLISHELs~---T-GAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~--kl--l~----------rgI~v 136 (282)
.+||+||=|..- + |-=-+.-+|++.|.+.|++|.+++-.-+.........+.. .+ -. .|+++
T Consensus 588 M~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~GV~v 667 (1036)
T PLN02316 588 MHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEGLSV 667 (1036)
T ss_pred cEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECCcEE
Confidence 689999999753 4 3345678999999999999999994322100000000000 00 00 13443
Q ss_pred eeh-h-------c--------hhHH--------HHh----hccCEEEEe---chhchHHHHHHhhccCCCCCCceEEEee
Q 023401 137 ISA-K-------G--------QETI--------NTA----LKADLIVLN---TAVAGKWLDAVLKEDVPRVLPNVLWWIH 185 (282)
Q Consensus 137 ~~~-k-------~--------~~~i--------~~a----~~~DLVIaN---T~v~g~wl~~l~~~~~~~~~~pVIWWIH 185 (282)
+.- . + .+.| ..+ .++|+|-+| |+..+-++....+.. +....|+|-=||
T Consensus 668 yfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~-~~~~~p~V~TiH 746 (1036)
T PLN02316 668 YFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHY-GLSKARVVFTIH 746 (1036)
T ss_pred EEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhh-ccCCCCEEEEeC
Confidence 310 0 0 0111 111 268999999 555555555432111 122348888899
Q ss_pred eccc--ccc--cccccccccccccccccchhhHHHHHHhhhhhcCCCCC--CeeEEEecCcHHHH-----------HHHH
Q 023401 186 EMRG--HYF--KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP--DTYVVHLGNSKELM-----------EVAE 248 (282)
Q Consensus 186 E~r~--~Yf--~l~~vkhL~~v~~~~~dS~Ata~~w~~~~~~~l~Ikl~--~~~vv~L~~~~~l~-----------~~a~ 248 (282)
-... .+. .+.+...+..| |++.++.-.+.. .+..+ +-++++=|...+.- .-++
T Consensus 747 nl~~~~n~lk~~l~~AD~ViTV------S~tya~EI~~~~----~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~ 816 (1036)
T PLN02316 747 NLEFGANHIGKAMAYADKATTV------SPTYSREVSGNS----AIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSE 816 (1036)
T ss_pred CcccchhHHHHHHHHCCEEEeC------CHHHHHHHHhcc----CcccccCCEEEEECCccccccCCcccccccccCCch
Confidence 6541 111 14567778888 999886655421 12211 23445444432210 0011
Q ss_pred HH-HHHHHHHHHHHHHhCCCC-CCEEEEEecc
Q 023401 249 DN-VAKRVLREHVRESLGVRN-EDLLFAIINR 278 (282)
Q Consensus 249 ~~-v~~~~lre~vr~~lGl~~-dd~lv~~~~s 278 (282)
+. ..++.-++.+|+++|+++ +..+|+.+..
T Consensus 817 ~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGR 848 (1036)
T PLN02316 817 NVVEGKRAAKEALQQRLGLKQADLPLVGIITR 848 (1036)
T ss_pred hhhhhhhhhHHHHHHHhCCCcccCeEEEEEec
Confidence 11 234456777899999995 5667776654
No 66
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=85.50 E-value=5.7 Score=38.19 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=24.2
Q ss_pred CCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 84 LSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 84 Ls~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
.+-||+=+.--.+|+.|++.|.++.++...
T Consensus 12 aGgtsGhi~paal~~~l~~~~~~~~~~g~g 41 (385)
T TIGR00215 12 AGEASGDILGAGLRQQLKEHYPNARFIGVA 41 (385)
T ss_pred eCCccHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence 456777777669999999999999988854
No 67
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=84.65 E-value=6.8 Score=36.66 Aligned_cols=172 Identities=16% Similarity=0.217 Sum_probs=92.6
Q ss_pred ccccEEEEEeccCC-CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhc
Q 023401 72 MKSKLVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (282)
Q Consensus 72 ~~~KkILLISHELs-~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~ 150 (282)
.+.|+|+|.|..-+ .+|.|..|.+.+. =...+.+++|++..+- .+....|..++.-...+.+.....
T Consensus 11 ~~~~~Ivf~~~~g~~~~dN~~~l~~~l~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~v~~~s~~~~~~~~~ 78 (369)
T PF04464_consen 11 KKKKKIVFESESGNKFSDNPKALFEYLI-KNYPDYKIYWIINKKS-----------PELKPKGIKVVKFGSLKHIYYLAR 78 (369)
T ss_dssp -EEEEEEEEBTTTTBS-HHHHHHHHHHH-HH-TTSEEEEEESSGG-----------G----SS-EEEETTSHHHHHHHHH
T ss_pred ccCCEEEEEECCCCCCCCCHHHHHHHHH-hhCCCcEEEEEEcCch-----------HhhccCCceEEeecHHHHHHHHHh
Confidence 57889999998544 4588999998766 2345889999995533 155667888887767777778889
Q ss_pred cCEEEEechhchH-HHHHHhhccCCCCCCceEEEeeecccccccccc----------cccccccccccccchhhHHHHHH
Q 023401 151 ADLIVLNTAVAGK-WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDY----------VKHLPLVAGAMIDSHVTAEYWKN 219 (282)
Q Consensus 151 ~DLVIaNT~v~g~-wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~l~~----------vkhL~~v~~~~~dS~Ata~~w~~ 219 (282)
++.+|.|+....- +.. .....++|.-=|-.--.-+.++. .+......-++..|+...+.+++
T Consensus 79 Ak~~i~~~~~~~~~~~~-------~~~~~~~i~lwHG~~~K~~g~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~ 151 (369)
T PF04464_consen 79 AKYIISDSYFPDLIYFK-------KRKNQKYIQLWHGIPLKKIGYDSPDNKNYRKNYKRNYRNYDYFIVSSEFEKEIFKK 151 (369)
T ss_dssp EEEEEESS---T--TS----------TTSEEEE--SS--SB--GGG-S---TS-HHHHHHHTT-SEEEESSHHHHHHHHH
T ss_pred CcEEEECCCCCcccccc-------cCCCcEEEEecCCCcccccchhccccccchhhhhhhccCCcEEEECCHHHHHHHHH
Confidence 9999999543221 111 01122566544554211000000 00111111255669999999888
Q ss_pred hhh-hhcCCCCCCeeEEEecCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEE
Q 023401 220 RTR-ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF 273 (282)
Q Consensus 220 ~~~-~~l~Ikl~~~~vv~L~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv 273 (282)
.++ ++.++-. .-.-.+|.|.. ...+ .++.+++.+|++.+.-+|
T Consensus 152 ~f~~~~~~i~~-----~G~PR~D~l~~----~~~~--~~~~i~~~~~~~~~~k~I 195 (369)
T PF04464_consen 152 AFGYPEDKILV-----TGYPRNDYLFN----KSKE--NRNRIKKKLGIDKDKKVI 195 (369)
T ss_dssp HTT--GGGEEE-----S--GGGHHHHH----STT---HHHHHHHHTT--SS-EEE
T ss_pred HhccCcceEEE-----eCCCeEhHHhc----cCHH--HHHHHHHHhccCCCCcEE
Confidence 876 3333322 36667888887 3333 277889999999987544
No 68
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.07 E-value=4.9 Score=39.83 Aligned_cols=92 Identities=20% Similarity=0.144 Sum_probs=57.9
Q ss_pred CCCccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhH
Q 023401 65 KSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQET 144 (282)
Q Consensus 65 ~~~~~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~ 144 (282)
|-+-+.+..+|+|+++. ++.+| +.+|+.|++.|++|.+.= +... ...+.+.+.|+++....+...
T Consensus 6 ~~~~~~~~~~~~v~v~G--~G~sG-----~a~a~~L~~~G~~V~~~D-~~~~-------~~~~~l~~~gi~~~~~~~~~~ 70 (473)
T PRK00141 6 PLSALPQELSGRVLVAG--AGVSG-----RGIAAMLSELGCDVVVAD-DNET-------ARHKLIEVTGVADISTAEASD 70 (473)
T ss_pred hhhhcccccCCeEEEEc--cCHHH-----HHHHHHHHHCCCEEEEEC-CChH-------HHHHHHHhcCcEEEeCCCchh
Confidence 34567889999999997 55555 377888999999765533 2211 112223445998876432221
Q ss_pred HHHhhccCEEEEechhc--hHHHHHHhhccC
Q 023401 145 INTALKADLIVLNTAVA--GKWLDAVLKEDV 173 (282)
Q Consensus 145 i~~a~~~DLVIaNT~v~--g~wl~~l~~~~~ 173 (282)
...++|+||....+. .+++.+..+...
T Consensus 71 --~~~~~d~vV~Spgi~~~~p~~~~a~~~gi 99 (473)
T PRK00141 71 --QLDSFSLVVTSPGWRPDSPLLVDAQSQGL 99 (473)
T ss_pred --HhcCCCEEEeCCCCCCCCHHHHHHHHCCC
Confidence 235899999998885 345555544444
No 69
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=84.04 E-value=18 Score=34.99 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.8
Q ss_pred CCCchHHHHHHHHHHHhCCC--eEEEEec
Q 023401 86 LSGGPLLLMELAFLLRGVGT--KVNWITI 112 (282)
Q Consensus 86 ~TGAPLlLleLA~~Lkq~G~--~V~vL~~ 112 (282)
..|+..-+.+|++.|.+.|+ +|.+++.
T Consensus 25 ~GG~~~~v~~La~~L~~~G~~~~V~v~t~ 53 (439)
T TIGR02472 25 TGGQTKYVLELARALARRSEVEQVDLVTR 53 (439)
T ss_pred CCCcchHHHHHHHHHHhCCCCcEEEEEec
Confidence 35788899999999999997 9999995
No 70
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=83.67 E-value=6.8 Score=38.82 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=60.0
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH---
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN--- 146 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~--- 146 (282)
...+||++.+.+ +|-..+.+++.|++.|.+|+.+....+.. +....+. +.+..++.++.+.....+.
T Consensus 322 ~~L~Gkrv~i~~-------g~~~~~~l~~~l~elGmevv~~~t~~~~~--~d~~~l~-~~~~~~~~v~~~~d~~e~~~~i 391 (456)
T TIGR01283 322 ERLKGKKAAIYT-------GGVKSWSLVSALQDLGMEVVATGTQKGTE--EDYARIR-ELMGEGTVMLDDANPRELLKLL 391 (456)
T ss_pred HHcCCCEEEEEc-------CCchHHHHHHHHHHCCCEEEEEeeecCCH--HHHHHHH-HHcCCCeEEEeCCCHHHHHHHH
Confidence 446899996532 23566789999999999999886554432 1111122 2222355555554444443
Q ss_pred HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc
Q 023401 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK 193 (282)
Q Consensus 147 ~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~ 193 (282)
...++|++|.|+-. +++.. +..+ |.+..-|+..+.|+.
T Consensus 392 ~~~~pDl~ig~~~~--~~~a~--k~gi-----P~i~~~~~~~~p~~G 429 (456)
T TIGR01283 392 LEYKADLLIAGGKE--RYTAL--KLGI-----PFCDINHEREHPYAG 429 (456)
T ss_pred hhcCCCEEEEccch--HHHHH--hcCC-----CEEEcccccCCCCcc
Confidence 34569999999654 22221 1233 666665654444443
No 71
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=83.64 E-value=32 Score=33.43 Aligned_cols=151 Identities=15% Similarity=0.082 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh---------h-------chhHHHHhh--ccC
Q 023401 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA---------K-------GQETINTAL--KAD 152 (282)
Q Consensus 91 LlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~---------k-------~~~~i~~a~--~~D 152 (282)
.+.-.+.+.|++.|++|.+.+.+++. +.+.+...|++...- | ..+..+.+. ++|
T Consensus 14 hfFk~~I~eL~~~GheV~it~R~~~~--------~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pD 85 (335)
T PF04007_consen 14 HFFKNIIRELEKRGHEVLITARDKDE--------TEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPD 85 (335)
T ss_pred HHHHHHHHHHHhCCCEEEEEEeccch--------HHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 34556788999999999999977663 233333345554421 1 111122334 699
Q ss_pred EEEEechhchHHHHHHhhccCCCCCCceEEEeeecccccccccccccccccccccccchhhHHHHHHhhhhhcCCC-CCC
Q 023401 153 LIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK-MPD 231 (282)
Q Consensus 153 LVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~l~~vkhL~~v~~~~~dS~Ata~~w~~~~~~~l~Ik-l~~ 231 (282)
++|.-.-+.+.-+...+ ..|.|.+..-....+. ++ =-+|+..-++.++-.-.++|++...+ .+|. -+.
T Consensus 86 v~is~~s~~a~~va~~l-------giP~I~f~D~e~a~~~--~~-Lt~Pla~~i~~P~~~~~~~~~~~G~~-~~i~~y~G 154 (335)
T PF04007_consen 86 VAISFGSPEAARVAFGL-------GIPSIVFNDTEHAIAQ--NR-LTLPLADVIITPEAIPKEFLKRFGAK-NQIRTYNG 154 (335)
T ss_pred EEEecCcHHHHHHHHHh-------CCCeEEEecCchhhcc--ce-eehhcCCeeECCcccCHHHHHhcCCc-CCEEEECC
Confidence 99976666665555443 2388888754222221 11 12454433333333334455554323 4554 332
Q ss_pred -eeEEEecCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Q 023401 232 -TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFA 274 (282)
Q Consensus 232 -~~vv~L~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~ 274 (282)
..+..|-+ + --.+++.++||+.++..+|.
T Consensus 155 ~~E~ayl~~-----F---------~Pd~~vl~~lg~~~~~yIvv 184 (335)
T PF04007_consen 155 YKELAYLHP-----F---------KPDPEVLKELGLDDEPYIVV 184 (335)
T ss_pred eeeEEeecC-----C---------CCChhHHHHcCCCCCCEEEE
Confidence 22233322 2 23477888999888777764
No 72
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=83.33 E-value=8 Score=38.07 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=52.1
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc----CCceeehhchhH
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR----GVQVISAKGQET 144 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r----gI~v~~~k~~~~ 144 (282)
..+.+||++.+.. .|-.++.+++.|.+.|.+++.+...... ......+...+.+. ++.|+.......
T Consensus 298 ~~~l~gkrv~i~g-------~~~~~~~la~~L~elGm~v~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e 368 (435)
T cd01974 298 HQYLHGKKFALYG-------DPDFLIGLTSFLLELGMEPVHVLTGNGG--KRFEKEMQALLDASPYGAGAKVYPGKDLWH 368 (435)
T ss_pred HHhcCCCEEEEEc-------ChHHHHHHHHHHHHCCCEEEEEEeCCCC--HHHHHHHHHHHhhcCCCCCcEEEECCCHHH
Confidence 3467899998764 4667999999999999999776643332 22222223333321 455655544333
Q ss_pred HH---HhhccCEEEEech
Q 023401 145 IN---TALKADLIVLNTA 159 (282)
Q Consensus 145 i~---~a~~~DLVIaNT~ 159 (282)
+. ...++|++|.|+-
T Consensus 369 ~~~~i~~~~pDliiG~s~ 386 (435)
T cd01974 369 LRSLLFTEPVDLLIGNTY 386 (435)
T ss_pred HHHHHhhcCCCEEEECcc
Confidence 33 3557999999996
No 73
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.97 E-value=12 Score=36.01 Aligned_cols=88 Identities=20% Similarity=0.249 Sum_probs=54.7
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhh-c
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL-K 150 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~-~ 150 (282)
++||+|+++.- +. .=+..|+.|.+.|++|.+.-.+..+ . ....+++.+.|+++........+ .. .
T Consensus 3 ~~~k~v~v~G~------g~-~G~s~a~~l~~~G~~V~~~d~~~~~-~----~~~~~~l~~~g~~~~~~~~~~~~--~~~~ 68 (447)
T PRK02472 3 YQNKKVLVLGL------AK-SGYAAAKLLHKLGANVTVNDGKPFS-E----NPEAQELLEEGIKVICGSHPLEL--LDED 68 (447)
T ss_pred cCCCEEEEEee------CH-HHHHHHHHHHHCCCEEEEEcCCCcc-c----hhHHHHHHhcCCEEEeCCCCHHH--hcCc
Confidence 46899988872 22 3345699999999998776422111 1 12235567779888753222222 23 3
Q ss_pred cCEEEEechhc--hHHHHHHhhccC
Q 023401 151 ADLIVLNTAVA--GKWLDAVLKEDV 173 (282)
Q Consensus 151 ~DLVIaNT~v~--g~wl~~l~~~~~ 173 (282)
+|+||.+..+. .+.+.+..+.+.
T Consensus 69 ~d~vV~s~gi~~~~~~~~~a~~~~i 93 (447)
T PRK02472 69 FDLMVKNPGIPYTNPMVEKALEKGI 93 (447)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCC
Confidence 99999999774 566666654444
No 74
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=82.78 E-value=5.6 Score=38.88 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=50.2
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHH--HHcCCceeehhchhHHH-
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKM--WDRGVQVISAKGQETIN- 146 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kl--l~rgI~v~~~k~~~~i~- 146 (282)
.+.+||+|.+. |.|-..+.+++.|.+.|.+|..+....+.. +....++.+. ......++.......+.
T Consensus 295 ~~l~gk~v~i~-------~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~d~~el~~ 365 (428)
T cd01965 295 FYLGGKRVAIA-------GDPDLLLGLSRFLLEMGAEPVAAVTGTDNP--PFEKRMELLASLEGIPAEVVFVGDLWDLES 365 (428)
T ss_pred HHhcCCEEEEE-------cChHHHHHHHHHHHHcCCcceEEEEcCCCc--hhHHHHHHhhhhcCCCceEEECCCHHHHHH
Confidence 57789999876 355678899999999999998777544422 1111121111 11233344443344443
Q ss_pred --HhhccCEEEEechh
Q 023401 147 --TALKADLIVLNTAV 160 (282)
Q Consensus 147 --~a~~~DLVIaNT~v 160 (282)
...++|+||.|+-.
T Consensus 366 ~i~~~~pdliig~~~~ 381 (428)
T cd01965 366 LAKEEPVDLLIGNSHG 381 (428)
T ss_pred HhhccCCCEEEECchh
Confidence 24459999999974
No 75
>PLN02275 transferase, transferring glycosyl groups
Probab=82.77 E-value=13 Score=35.01 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=26.0
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
+|-.+++. .+..++|-+..+...+.++.|.+|.+++..++
T Consensus 5 ~~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~ 44 (371)
T PLN02275 5 GRAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGGS 44 (371)
T ss_pred cEEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 44444444 55566777766666777666678999985544
No 76
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=81.63 E-value=12 Score=36.31 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=49.8
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (282)
.....||++.+.+ .|-....+++.|++.|.+|+.+....+.. +....+. +.+..+..++.+.....+.
T Consensus 282 ~~~l~gkrv~i~~-------~~~~~~~la~~l~elGm~v~~~~~~~~~~--~~~~~~~-~~~~~~~~v~~~~~~~e~~~~ 351 (410)
T cd01968 282 RARLEGKKAALYT-------GGVKSWSLVSALQDLGMEVVATGTQKGTK--EDYERIK-ELLGEGTVIVDDANPRELKKL 351 (410)
T ss_pred HHHhCCCEEEEEc-------CCchHHHHHHHHHHCCCEEEEEecccCCH--HHHHHHH-HHhCCCcEEEeCCCHHHHHHH
Confidence 4567899997643 23345889999999999998887544431 1111122 2222355555554433333
Q ss_pred -HhhccCEEEEechh
Q 023401 147 -TALKADLIVLNTAV 160 (282)
Q Consensus 147 -~a~~~DLVIaNT~v 160 (282)
...++|++|.|+-.
T Consensus 352 i~~~~pDl~ig~s~~ 366 (410)
T cd01968 352 LKEKKADLLVAGGKE 366 (410)
T ss_pred HhhcCCCEEEECCcc
Confidence 24569999999764
No 77
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.59 E-value=6.3 Score=38.45 Aligned_cols=73 Identities=21% Similarity=0.136 Sum_probs=47.3
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHh
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a 148 (282)
++.+++|+|++|. ++.+|- .+|++|++.|++|...= ... ... .++.+.|+.+..- ... ..
T Consensus 4 ~~~~~~~~i~viG--~G~~G~-----~~a~~l~~~G~~v~~~D-~~~---~~~-----~~l~~~g~~~~~~--~~~--~~ 63 (460)
T PRK01390 4 VTGFAGKTVAVFG--LGGSGL-----ATARALVAGGAEVIAWD-DNP---ASR-----AKAAAAGITTADL--RTA--DW 63 (460)
T ss_pred ccccCCCEEEEEe--ecHhHH-----HHHHHHHHCCCEEEEEC-CCh---hhH-----HHHHhcCccccCC--Chh--HH
Confidence 3456789999998 788883 45999999999876532 211 111 2345668875431 111 23
Q ss_pred hccCEEEEechhc
Q 023401 149 LKADLIVLNTAVA 161 (282)
Q Consensus 149 ~~~DLVIaNT~v~ 161 (282)
.++|+||...++.
T Consensus 64 ~~~d~vv~sp~i~ 76 (460)
T PRK01390 64 SGFAALVLSPGVP 76 (460)
T ss_pred cCCCEEEECCCCC
Confidence 5799999888765
No 78
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=81.08 E-value=7.7 Score=28.74 Aligned_cols=58 Identities=28% Similarity=0.342 Sum_probs=44.0
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeehhchhHH
Q 023401 88 GGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISAKGQETI 145 (282)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~~~v~~~L~~kll~rgI~v~~~k~~~~i 145 (282)
||=..=+|+|..|...|.+|.++...+.. .+.+....+++.+.++||++.......++
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 55567789999999999999999855443 34566667788888889999877544444
No 79
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=81.03 E-value=4.1 Score=33.80 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=38.6
Q ss_pred chhhHHHHHHhhhhhcCCCCCCeeEEEecCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecccc
Q 023401 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINRHR 280 (282)
Q Consensus 210 S~Ata~~w~~~~~~~l~Ikl~~~~vv~L~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~~~s~~ 280 (282)
|.+.|.-+-.+......+..|....+.+.++- ++..+.+.......-+.+...+.+.++|+||++.+|=+
T Consensus 46 S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gDvli~iS~SG~ 115 (138)
T PF13580_consen 46 SAAIASHFAADLGGLFGVNRILLPAIALNDDA-LTAISNDLEYDEGFARQLLALYDIRPGDVLIVISNSGN 115 (138)
T ss_dssp HHHHHHHHHHHHHCHSSSTSSS-SEEETTSTH-HHHHHHHTTGGGTHHHHHHHHTT--TT-EEEEEESSS-
T ss_pred hhhHHHHHHHHHhcCcCCCcccccccccccch-HhhhhcccchhhHHHHHHHHHcCCCCCCEEEEECCCCC
Confidence 55566555555543333433334456777766 44444443333345556666788999999999999843
No 80
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=80.86 E-value=4 Score=38.56 Aligned_cols=109 Identities=17% Similarity=0.044 Sum_probs=56.2
Q ss_pred hhccCEEEEechh----chHHHHHHhhccCCCCCCceEEEeeec-cccccc-ccccccccccccccccchhhHHHHHHhh
Q 023401 148 ALKADLIVLNTAV----AGKWLDAVLKEDVPRVLPNVLWWIHEM-RGHYFK-LDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (282)
Q Consensus 148 a~~~DLVIaNT~v----~g~wl~~l~~~~~~~~~~pVIWWIHE~-r~~Yf~-l~~vkhL~~v~~~~~dS~Ata~~w~~~~ 221 (282)
..++|+|+.--.. .+..+..+.+.. ....|++.+++|. ..+++- .++++.+... |+.++++...+
T Consensus 98 ~~~pDvIi~thp~~~~~~~~~l~~~~~~~--~~~~p~~~~~tD~~~~~~~w~~~~~d~~~~~------s~~~~~~l~~~- 168 (382)
T PLN02605 98 KYKPDIIVSVHPLMQHVPLRVLRWQGKEL--GKKIPFTTVVTDLGTCHPTWFHKGVTRCFCP------SEEVAKRALKR- 168 (382)
T ss_pred hcCcCEEEEeCcCcccCHHHHHHHHhhcc--CCCCCEEEEECCCCCcCcccccCCCCEEEEC------CHHHHHHHHHc-
Confidence 3579999882111 222333332111 1123888888886 344433 2344555555 88888776543
Q ss_pred hhhcCCCCCCeeEEEecCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEe
Q 023401 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 276 (282)
Q Consensus 222 ~~~l~Ikl~~~~vv~L~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~~ 276 (282)
++.-.+-.++.+...++... .. -.++..|+++|+++|..+|..+
T Consensus 169 ----g~~~~ki~v~g~~v~~~f~~----~~---~~~~~~r~~~gl~~~~~~il~~ 212 (382)
T PLN02605 169 ----GLEPSQIRVYGLPIRPSFAR----AV---RPKDELRRELGMDEDLPAVLLM 212 (382)
T ss_pred ----CCCHHHEEEECcccCHhhcc----CC---CCHHHHHHHcCCCCCCcEEEEE
Confidence 22211223344444333221 00 1355688999999887555443
No 81
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=80.81 E-value=9.3 Score=39.09 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=63.9
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH----cCCceeehhchhHH
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD----RGVQVISAKGQETI 145 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~----rgI~v~~~k~~~~i 145 (282)
.+.+|||+.+. |.|-.++.+++.|.+.|.+++.+....+. .+.-..++..+.. .+..|...+....+
T Consensus 359 ~~l~GKrvaI~-------gdpd~~~~l~~fL~ElGmepv~v~~~~~~--~~~~~~l~~ll~~~~~~~~~~v~~~~Dl~~l 429 (515)
T TIGR01286 359 AWLHGKRFAIY-------GDPDFVMGLVRFVLELGCEPVHILCTNGT--KRWKAEMKALLAASPYGQNATVWIGKDLWHL 429 (515)
T ss_pred HHhcCceEEEE-------CCHHHHHHHHHHHHHCCCEEEEEEeCCCC--HHHHHHHHHHHhcCCCCCccEEEeCCCHHHH
Confidence 46789999876 47889999999999999997666544442 1221122222221 13455554433333
Q ss_pred H---HhhccCEEEEechhchHHHHHHhhccCCCC--CCceEEEeeeccc
Q 023401 146 N---TALKADLIVLNTAVAGKWLDAVLKEDVPRV--LPNVLWWIHEMRG 189 (282)
Q Consensus 146 ~---~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~--~~pVIWWIHE~r~ 189 (282)
+ ...++|++|.||- ++++..- .++|.+ .-|+.-=+|.-+.
T Consensus 430 ~~~l~~~~~DlliG~s~--~k~~a~~--~giPlir~gfPi~Dr~~~~r~ 474 (515)
T TIGR01286 430 RSLVFTEPVDFLIGNSY--GKYIQRD--TLVPLIRIGFPIFDRHHLHRF 474 (515)
T ss_pred HHHHhhcCCCEEEECch--HHHHHHH--cCCCEEEecCCeeEEECCCCC
Confidence 3 3467999999996 4555432 355544 2255555555443
No 82
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=80.53 E-value=7.8 Score=34.68 Aligned_cols=129 Identities=20% Similarity=0.226 Sum_probs=70.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehhchhHHHHhhc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAKGQETINTALK 150 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r-gI~v~~~k~~~~i~~a~~ 150 (282)
++||+||+|+ |++.. +.-++.|.+.|+.|.++.. ...+++ .++.+. ++......+... ....
T Consensus 7 l~gk~vlVvG------gG~va-~rk~~~Ll~~ga~VtVvsp---~~~~~l-----~~l~~~~~i~~~~~~~~~~--dl~~ 69 (205)
T TIGR01470 7 LEGRAVLVVG------GGDVA-LRKARLLLKAGAQLRVIAE---ELESEL-----TLLAEQGGITWLARCFDAD--ILEG 69 (205)
T ss_pred cCCCeEEEEC------cCHHH-HHHHHHHHHCCCEEEEEcC---CCCHHH-----HHHHHcCCEEEEeCCCCHH--HhCC
Confidence 5789999984 55544 6777888889999999983 222233 334444 454444443322 3578
Q ss_pred cCEEEEechh---chHHHHHHhhccCCCCCCceEEEeeecc-cc-ccccccccccccccccccc--chhhHHHHHHhhhh
Q 023401 151 ADLIVLNTAV---AGKWLDAVLKEDVPRVLPNVLWWIHEMR-GH-YFKLDYVKHLPLVAGAMID--SHVTAEYWKNRTRE 223 (282)
Q Consensus 151 ~DLVIaNT~v---~g~wl~~l~~~~~~~~~~pVIWWIHE~r-~~-Yf~l~~vkhL~~v~~~~~d--S~Ata~~w~~~~~~ 223 (282)
+|+||+-|=. ..+......+.++ +|-. .-|-+ +. ||+ ..++.=+.+-++... |++.+.+.+++.++
T Consensus 70 ~~lVi~at~d~~ln~~i~~~a~~~~i-----lvn~-~d~~e~~~f~~p-a~~~~g~l~iaisT~G~sP~la~~lr~~ie~ 142 (205)
T TIGR01470 70 AFLVIAATDDEELNRRVAHAARARGV-----PVNV-VDDPELCSFIFP-SIVDRSPVVVAISSGGAAPVLARLLRERIET 142 (205)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHcCC-----EEEE-CCCcccCeEEEe-eEEEcCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 9999998743 2333333322232 2211 11111 22 232 223332233233332 88888888888865
Q ss_pred h
Q 023401 224 R 224 (282)
Q Consensus 224 ~ 224 (282)
.
T Consensus 143 ~ 143 (205)
T TIGR01470 143 L 143 (205)
T ss_pred h
Confidence 3
No 83
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=80.49 E-value=3.9 Score=39.75 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=55.0
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeehhchhHHH----
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISAKGQETIN---- 146 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~---- 146 (282)
+++|++| |+-..-+|+|..|++.|.+|.++..... ..+.++...+++.+.++||++........++
T Consensus 148 ~~~vvVi-------GgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v 220 (438)
T PRK13512 148 VDKALVV-------GAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNEV 220 (438)
T ss_pred CCEEEEE-------CCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCEE
Confidence 4778777 4445789999999999999999984421 1345666678888888999987543222211
Q ss_pred -----HhhccCEEEEechh
Q 023401 147 -----TALKADLIVLNTAV 160 (282)
Q Consensus 147 -----~a~~~DLVIaNT~v 160 (282)
....+|+|+.-|-.
T Consensus 221 ~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 221 TFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred EECCCCEEEeCEEEECcCC
Confidence 12458999876654
No 84
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=80.28 E-value=5.1 Score=37.98 Aligned_cols=85 Identities=22% Similarity=0.195 Sum_probs=48.0
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----------------------Cchhhhh-hhHHHHHHcC
Q 023401 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----------------------EEDEVIY-SLEHKMWDRG 133 (282)
Q Consensus 77 ILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----------------------~~~~v~~-~L~~kll~rg 133 (282)
+=+|..+-++-=-|+-+++.++.|.+.|+.|.--++.++- ..|.... .|+.-..+..
T Consensus 96 LEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~ 175 (247)
T PF05690_consen 96 LEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERAD 175 (247)
T ss_dssp E--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHGS
T ss_pred EEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHhcC
Confidence 3356666666678999999999999999999887765542 1111111 2333333347
Q ss_pred Cceeehhchh-----HHHHhhccCEEEEechhc
Q 023401 134 VQVISAKGQE-----TINTALKADLIVLNTAVA 161 (282)
Q Consensus 134 I~v~~~k~~~-----~i~~a~~~DLVIaNT~v~ 161 (282)
+||+-|-|.- ..-+...+|-|.+||+++
T Consensus 176 vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 176 VPVIVDAGIGTPSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp SSBEEES---SHHHHHHHHHTT-SEEEESHHHH
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCceeehhhHHh
Confidence 8887764332 222567799999999986
No 85
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=79.96 E-value=5.6 Score=34.26 Aligned_cols=80 Identities=20% Similarity=0.179 Sum_probs=47.8
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHH-HHhhccC
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETI-NTALKAD 152 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i-~~a~~~D 152 (282)
+++|+++-=.-|..|- =+-+|+.|.+.|++|.++.....+...+....-.+.+.+.|++++........ .....+|
T Consensus 25 ~~~v~il~G~GnNGgD---gl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d 101 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGD---GLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPAD 101 (169)
T ss_dssp T-EEEEEE-SSHHHHH---HHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCES
T ss_pred CCeEEEEECCCCChHH---HHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhccccccc
Confidence 4445544433344433 45689999999999999664444434455455566777779988865333322 2344788
Q ss_pred EEEE
Q 023401 153 LIVL 156 (282)
Q Consensus 153 LVIa 156 (282)
+||=
T Consensus 102 lIID 105 (169)
T PF03853_consen 102 LIID 105 (169)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 86
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=78.97 E-value=8.7 Score=30.33 Aligned_cols=64 Identities=34% Similarity=0.421 Sum_probs=40.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhcc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~ 151 (282)
++||+||+|+ |+++.. +=++.|.+.|++|.|++ +.. +..+..++...+... ....++
T Consensus 5 l~~~~vlVvG------gG~va~-~k~~~Ll~~gA~v~vis---~~~----------~~~~~~i~~~~~~~~---~~l~~~ 61 (103)
T PF13241_consen 5 LKGKRVLVVG------GGPVAA-RKARLLLEAGAKVTVIS---PEI----------EFSEGLIQLIRREFE---EDLDGA 61 (103)
T ss_dssp -TT-EEEEEE------ESHHHH-HHHHHHCCCTBEEEEEE---SSE----------HHHHTSCEEEESS-G---GGCTTE
T ss_pred cCCCEEEEEC------CCHHHH-HHHHHHHhCCCEEEEEC---Cch----------hhhhhHHHHHhhhHH---HHHhhh
Confidence 4789999996 556554 77778888899999999 320 222244554444332 246789
Q ss_pred CEEEEec
Q 023401 152 DLIVLNT 158 (282)
Q Consensus 152 DLVIaNT 158 (282)
|+||+.|
T Consensus 62 ~lV~~at 68 (103)
T PF13241_consen 62 DLVFAAT 68 (103)
T ss_dssp SEEEE-S
T ss_pred eEEEecC
Confidence 9999988
No 87
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=78.84 E-value=6.2 Score=39.60 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=51.0
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (282)
..+.+||++.+ .|.|-....+++.|++.|.+|..+.......++. .. .+.+++.+..++.+....++.
T Consensus 319 ~~~l~Gk~vaI-------~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~--~~-l~~~~~~~~~v~~d~~~~e~~~~ 388 (475)
T PRK14478 319 RPRLEGKRVLL-------YTGGVKSWSVVKALQELGMEVVGTSVKKSTDEDK--ER-IKELMGPDAHMIDDANPRELYKM 388 (475)
T ss_pred HHHhCCCEEEE-------EcCCchHHHHHHHHHHCCCEEEEEEEECCCHHHH--HH-HHHHcCCCcEEEeCCCHHHHHHH
Confidence 45678999976 2344567799999999999999887554431111 11 223333355566664344443
Q ss_pred -HhhccCEEEEech
Q 023401 147 -TALKADLIVLNTA 159 (282)
Q Consensus 147 -~a~~~DLVIaNT~ 159 (282)
...++|++|.|+-
T Consensus 389 i~~~~pDliig~s~ 402 (475)
T PRK14478 389 LKEAKADIMLSGGR 402 (475)
T ss_pred HhhcCCCEEEecCc
Confidence 2356999999955
No 88
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=78.56 E-value=18 Score=34.67 Aligned_cols=87 Identities=24% Similarity=0.210 Sum_probs=60.0
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc--------hhH
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------QET 144 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~--------~~~ 144 (282)
+++.|.|++ .+.+|=.-.+..||.++++.|..|.++...-- ..--+..+.....++|++++.... .+.
T Consensus 113 ~~~vi~lvG--pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~--r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 113 KPFVILVVG--VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF--RAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCeEEEEEC--CCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc--chhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 477888888 89999999999999999999999998874311 000111244455667898875421 122
Q ss_pred HH--HhhccCEEEEechhchH
Q 023401 145 IN--TALKADLIVLNTAVAGK 163 (282)
Q Consensus 145 i~--~a~~~DLVIaNT~v~g~ 163 (282)
+. ...++|+||+.|+-...
T Consensus 189 l~~~~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 189 IQAAKARGIDVLIIDTAGRLH 209 (318)
T ss_pred HHHHHhCCCCEEEEeCCCCCc
Confidence 22 35679999999996543
No 89
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=76.58 E-value=13 Score=34.27 Aligned_cols=71 Identities=17% Similarity=0.124 Sum_probs=44.8
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccC
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~D 152 (282)
++|+||+|+ |+++. +.=++.|.+.|+.|.|++ +...+++ .+....-.+......+... -+..++
T Consensus 24 ~~~~VLVVG------GG~VA-~RK~~~Ll~~gA~VtVVa---p~i~~el----~~l~~~~~i~~~~r~~~~~--dl~g~~ 87 (223)
T PRK05562 24 NKIKVLIIG------GGKAA-FIKGKTFLKKGCYVYILS---KKFSKEF----LDLKKYGNLKLIKGNYDKE--FIKDKH 87 (223)
T ss_pred CCCEEEEEC------CCHHH-HHHHHHHHhCCCEEEEEc---CCCCHHH----HHHHhCCCEEEEeCCCChH--HhCCCc
Confidence 366777774 77777 455566777899999999 4333333 3322223566665544432 257899
Q ss_pred EEEEech
Q 023401 153 LIVLNTA 159 (282)
Q Consensus 153 LVIaNT~ 159 (282)
|||+-|-
T Consensus 88 LViaATd 94 (223)
T PRK05562 88 LIVIATD 94 (223)
T ss_pred EEEECCC
Confidence 9999874
No 90
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=76.55 E-value=13 Score=33.08 Aligned_cols=71 Identities=21% Similarity=0.321 Sum_probs=43.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcC-CceeehhchhHHHHhhc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG-VQVISAKGQETINTALK 150 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rg-I~v~~~k~~~~i~~a~~ 150 (282)
++||+||+|+ |+. +-...++.|.+.|++|.++. +....++ . ++.+.| +.......... ...+
T Consensus 8 l~~k~vLVIG------gG~-va~~ka~~Ll~~ga~V~VIs---~~~~~~l----~-~l~~~~~i~~~~~~~~~~--~l~~ 70 (202)
T PRK06718 8 LSNKRVVIVG------GGK-VAGRRAITLLKYGAHIVVIS---PELTENL----V-KLVEEGKIRWKQKEFEPS--DIVD 70 (202)
T ss_pred cCCCEEEEEC------CCH-HHHHHHHHHHHCCCeEEEEc---CCCCHHH----H-HHHhCCCEEEEecCCChh--hcCC
Confidence 5799999994 444 44778888888999999886 2212222 2 333333 43333222211 3578
Q ss_pred cCEEEEech
Q 023401 151 ADLIVLNTA 159 (282)
Q Consensus 151 ~DLVIaNT~ 159 (282)
+|+||+-|-
T Consensus 71 adlViaaT~ 79 (202)
T PRK06718 71 AFLVIAATN 79 (202)
T ss_pred ceEEEEcCC
Confidence 999999763
No 91
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=76.03 E-value=26 Score=32.60 Aligned_cols=90 Identities=23% Similarity=0.216 Sum_probs=55.5
Q ss_pred CCccccc-cccEEEEEeccCCCCCchHHHHHHHHHHHhC-C-CeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch
Q 023401 66 SSPLSFM-KSKLVLLVSHELSLSGGPLLLMELAFLLRGV-G-TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ 142 (282)
Q Consensus 66 ~~~~~f~-~~KkILLISHELs~TGAPLlLleLA~~Lkq~-G-~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~ 142 (282)
+.+..|. +++.|+|++- +.+|=--.+..||.++... | ..|.++....- ..-.+..|..--...|+++......
T Consensus 185 ~~~~~~~~~~~vi~~vGp--tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~--r~~a~eql~~~~~~~~~p~~~~~~~ 260 (282)
T TIGR03499 185 PEEDEILEQGGVIALVGP--TGVGKTTTLAKLAARFVLEHGNKKVALITTDTY--RIGAVEQLKTYAKILGVPVKVARDP 260 (282)
T ss_pred CccccccCCCeEEEEECC--CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc--chhHHHHHHHHHHHhCCceeccCCH
Confidence 3444555 4566777764 8889999999999999876 5 89999984321 0001112222222247777544333
Q ss_pred hH----HHHhhccCEEEEech
Q 023401 143 ET----INTALKADLIVLNTA 159 (282)
Q Consensus 143 ~~----i~~a~~~DLVIaNT~ 159 (282)
.. +..+.++|+|++.|+
T Consensus 261 ~~l~~~l~~~~~~d~vliDt~ 281 (282)
T TIGR03499 261 KELRKALDRLRDKDLILIDTA 281 (282)
T ss_pred HHHHHHHHHccCCCEEEEeCC
Confidence 22 334567999999986
No 92
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=75.85 E-value=12 Score=32.04 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=42.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehhchhHHHHhhc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAKGQETINTALK 150 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r-gI~v~~~k~~~~i~~a~~ 150 (282)
++||+||+|+ |++ +-.+.++.|.+.|++|.++. ++. .+++.+. ++....+..++. -..+
T Consensus 11 l~~~~vlVvG------GG~-va~rka~~Ll~~ga~V~VIs---p~~--------~~~l~~l~~i~~~~~~~~~~--dl~~ 70 (157)
T PRK06719 11 LHNKVVVIIG------GGK-IAYRKASGLKDTGAFVTVVS---PEI--------CKEMKELPYITWKQKTFSND--DIKD 70 (157)
T ss_pred cCCCEEEEEC------CCH-HHHHHHHHHHhCCCEEEEEc---Ccc--------CHHHHhccCcEEEecccChh--cCCC
Confidence 6799999984 444 45788889989999999995 321 1233332 233322222211 2577
Q ss_pred cCEEEEec
Q 023401 151 ADLIVLNT 158 (282)
Q Consensus 151 ~DLVIaNT 158 (282)
+|+||+-|
T Consensus 71 a~lViaaT 78 (157)
T PRK06719 71 AHLIYAAT 78 (157)
T ss_pred ceEEEECC
Confidence 99999966
No 93
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.40 E-value=18 Score=35.14 Aligned_cols=86 Identities=14% Similarity=0.202 Sum_probs=53.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH--cCCceeehhchhHHHHhh
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQVISAKGQETINTAL 149 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~--rgI~v~~~k~~~~i~~a~ 149 (282)
+.+|+|+++.. +.+| +..|+.|.+.|++|.+.-.+ . ..+. .+++.+ .|+.+........ ...
T Consensus 3 ~~~~~~~v~G~--g~~G-----~~~a~~l~~~g~~v~~~d~~-~--~~~~----~~~l~~~~~gi~~~~g~~~~~--~~~ 66 (445)
T PRK04308 3 FQNKKILVAGL--GGTG-----ISMIAYLRKNGAEVAAYDAE-L--KPER----VAQIGKMFDGLVFYTGRLKDA--LDN 66 (445)
T ss_pred CCCCEEEEECC--CHHH-----HHHHHHHHHCCCEEEEEeCC-C--Cchh----HHHHhhccCCcEEEeCCCCHH--HHh
Confidence 35788998873 3333 45689999999998765422 2 1111 234443 4887775533322 236
Q ss_pred ccCEEEEechhc--hHHHHHHhhccC
Q 023401 150 KADLIVLNTAVA--GKWLDAVLKEDV 173 (282)
Q Consensus 150 ~~DLVIaNT~v~--g~wl~~l~~~~~ 173 (282)
++|+||....+. .+++....+...
T Consensus 67 ~~d~vv~spgi~~~~p~~~~a~~~~i 92 (445)
T PRK04308 67 GFDILALSPGISERQPDIEAFKQNGG 92 (445)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 799999999987 456666654444
No 94
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.08 E-value=16 Score=36.40 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=54.9
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHh
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a 148 (282)
.++..||+|+++. ++++| +..+++|++.|++|.+ ... .+ + .+ +++.+.|+.++..... ....
T Consensus 7 ~~~~~~~~v~V~G--~G~sG-----~aa~~~L~~~G~~v~~-~D~-~~---~---~~-~~l~~~g~~~~~~~~~--~~~l 68 (488)
T PRK03369 7 DPLLPGAPVLVAG--AGVTG-----RAVLAALTRFGARPTV-CDD-DP---D---AL-RPHAERGVATVSTSDA--VQQI 68 (488)
T ss_pred ccccCCCeEEEEc--CCHHH-----HHHHHHHHHCCCEEEE-EcC-CH---H---HH-HHHHhCCCEEEcCcch--HhHh
Confidence 3466789999998 77777 3445679999999877 322 21 1 12 3455678877643221 1234
Q ss_pred hccCEEEEechhc--hHHHHHHhhccC
Q 023401 149 LKADLIVLNTAVA--GKWLDAVLKEDV 173 (282)
Q Consensus 149 ~~~DLVIaNT~v~--g~wl~~l~~~~~ 173 (282)
.++|+||....+. .+.+.+..+.+.
T Consensus 69 ~~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 69 ADYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred hcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 5789999999885 445555544444
No 95
>PRK06988 putative formyltransferase; Provisional
Probab=74.77 E-value=19 Score=34.28 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=47.3
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC-CCchhhhhhhHHHHHHcCCceeeh-h--chhHHH--Hh
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP-SEEDEVIYSLEHKMWDRGVQVISA-K--GQETIN--TA 148 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G-~~~~~v~~~L~~kll~rgI~v~~~-k--~~~~i~--~a 148 (282)
.||+|+ |.|-+-....+.|.+.|++++.+..+.+ +.+.....++.+...+.||+++.- + ..+.++ ..
T Consensus 3 mkIvf~-------Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~~ 75 (312)
T PRK06988 3 PRAVVF-------AYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVAA 75 (312)
T ss_pred cEEEEE-------eCcHHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHHh
Confidence 356665 4555666667777778999887775532 212222346788888899999862 1 122222 35
Q ss_pred hccCEEEEe
Q 023401 149 LKADLIVLN 157 (282)
Q Consensus 149 ~~~DLVIaN 157 (282)
.++|++|+-
T Consensus 76 ~~~Dliv~~ 84 (312)
T PRK06988 76 AAPDFIFSF 84 (312)
T ss_pred cCCCEEEEe
Confidence 679998753
No 96
>PLN02949 transferase, transferring glycosyl groups
Probab=74.71 E-value=20 Score=35.90 Aligned_cols=41 Identities=12% Similarity=-0.026 Sum_probs=32.2
Q ss_pred EEEEEeccCCCC-CchHHHHHHHHHHHhCCC--eEEEEeccCCC
Q 023401 76 LVLLVSHELSLS-GGPLLLMELAFLLRGVGT--KVNWITIQKPS 116 (282)
Q Consensus 76 kILLISHELs~T-GAPLlLleLA~~Lkq~G~--~V~vL~~~~G~ 116 (282)
+|.|+==+++-. ||=-+|.+.+.-|.+.|. +|++-++...+
T Consensus 35 ~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~ 78 (463)
T PLN02949 35 AVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDA 78 (463)
T ss_pred EEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCC
Confidence 566666688666 999999999999999988 67777766443
No 97
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=74.49 E-value=18 Score=36.85 Aligned_cols=89 Identities=20% Similarity=0.276 Sum_probs=62.1
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhh
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL 149 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~ 149 (282)
.|. +|+|+++. |+.|| +.+|+.|++.|++|.+.-.+.-+.. +...++..-||.+....+.. ....
T Consensus 4 ~~~-~~kv~V~G--LG~sG-----~a~a~~L~~~G~~v~v~D~~~~~~~-----~~~~~~~~~~i~~~~g~~~~--~~~~ 68 (448)
T COG0771 4 DFQ-GKKVLVLG--LGKSG-----LAAARFLLKLGAEVTVSDDRPAPEG-----LAAQPLLLEGIEVELGSHDD--EDLA 68 (448)
T ss_pred ccc-CCEEEEEe--ccccc-----HHHHHHHHHCCCeEEEEcCCCCccc-----hhhhhhhccCceeecCccch--hccc
Confidence 355 99999998 57777 7889999999999888764433211 11234445688887765555 3367
Q ss_pred ccCEEEEechhc--hHHHHHHhhccC
Q 023401 150 KADLIVLNTAVA--GKWLDAVLKEDV 173 (282)
Q Consensus 150 ~~DLVIaNT~v~--g~wl~~l~~~~~ 173 (282)
++|+||.|=-+. .+++.+..+..+
T Consensus 69 ~~d~vV~SPGi~~~~p~v~~A~~~gi 94 (448)
T COG0771 69 EFDLVVKSPGIPPTHPLVEAAKAAGI 94 (448)
T ss_pred cCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 899999998876 567777764454
No 98
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.80 E-value=16 Score=37.51 Aligned_cols=118 Identities=16% Similarity=0.215 Sum_probs=80.7
Q ss_pred CccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh-------
Q 023401 67 SPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA------- 139 (282)
Q Consensus 67 ~~~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~------- 139 (282)
+++.+-|+|.=++..==|..+|-.-..--||.+++..|..+.+++...= ----+.-|...-.+.+||++-.
T Consensus 92 ~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTF--RagAfDQLkqnA~k~~iP~ygsyte~dpv 169 (483)
T KOG0780|consen 92 SALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTF--RAGAFDQLKQNATKARVPFYGSYTEADPV 169 (483)
T ss_pred cccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccc--ccchHHHHHHHhHhhCCeeEecccccchH
Confidence 6788889998888888899999999999999999999999999993211 1122345666677779999843
Q ss_pred ----hchhHHHHhhccCEEEEechhch----HHHHHHhhccCCCCCCceEEEeeecc
Q 023401 140 ----KGQETINTALKADLIVLNTAVAG----KWLDAVLKEDVPRVLPNVLWWIHEMR 188 (282)
Q Consensus 140 ----k~~~~i~~a~~~DLVIaNT~v~g----~wl~~l~~~~~~~~~~pVIWWIHE~r 188 (282)
.+-+.|+ -.+||+||+-|.--. +..+++..=. ....|--|-++.+.-
T Consensus 170 ~ia~egv~~fK-ke~fdvIIvDTSGRh~qe~sLfeEM~~v~-~ai~Pd~vi~VmDas 224 (483)
T KOG0780|consen 170 KIASEGVDRFK-KENFDVIIVDTSGRHKQEASLFEEMKQVS-KAIKPDEIIFVMDAS 224 (483)
T ss_pred HHHHHHHHHHH-hcCCcEEEEeCCCchhhhHHHHHHHHHHH-hhcCCCeEEEEEecc
Confidence 1223333 567999999997432 2233332111 223455667787765
No 99
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=73.47 E-value=24 Score=34.73 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=49.5
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhchhHHH--
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKGQETIN-- 146 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r--gI~v~~~k~~~~i~-- 146 (282)
+.+||++.++. .|-.+..+++.|.+.|.+++.+....+. .+.-.-|++...+. ++.++.+.....+.
T Consensus 297 ~l~gkrv~v~g-------~~~~~~~l~~~L~elG~~~~~v~~~~~~--~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~ 367 (429)
T cd03466 297 YNFGRKAAIYG-------EPDFVVAITRFVLENGMVPVLIATGSES--KKLKEKLEEDLKEYVEKCVILDGADFFDIESY 367 (429)
T ss_pred hcCCCEEEEEc-------CHHHHHHHHHHHHHCCCEEEEEEeCCCC--hHHHHHHHHHHHhcCCceEEEeCCCHHHHHHH
Confidence 45899997765 3778999999999999998666643332 12211122223332 33344443333333
Q ss_pred -HhhccCEEEEech
Q 023401 147 -TALKADLIVLNTA 159 (282)
Q Consensus 147 -~a~~~DLVIaNT~ 159 (282)
...++|++|.|+-
T Consensus 368 l~~~~~dliiG~s~ 381 (429)
T cd03466 368 AKELKIDVLIGNSY 381 (429)
T ss_pred HHhcCCCEEEECch
Confidence 3567999999997
No 100
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=73.19 E-value=14 Score=35.29 Aligned_cols=85 Identities=28% Similarity=0.255 Sum_probs=56.7
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----------------------Cchhhh-hhhHHHHHHcC
Q 023401 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----------------------EEDEVI-YSLEHKMWDRG 133 (282)
Q Consensus 77 ILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----------------------~~~~v~-~~L~~kll~rg 133 (282)
+=+|+|+=.+-=-|+-+++.|+.|.+.|+.|.--++.++- .-|... +.|+--+.+..
T Consensus 103 lEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~ 182 (262)
T COG2022 103 LEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEAD 182 (262)
T ss_pred EEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhCC
Confidence 6688999899899999999999999999999877765542 111111 12222222236
Q ss_pred Cceeehhchh-----HHHHhhccCEEEEechhc
Q 023401 134 VQVISAKGQE-----TINTALKADLIVLNTAVA 161 (282)
Q Consensus 134 I~v~~~k~~~-----~i~~a~~~DLVIaNT~v~ 161 (282)
+|++-|-|.- ..-+...+|-|.+||+++
T Consensus 183 VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA 215 (262)
T COG2022 183 VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 215 (262)
T ss_pred CCEEEeCCCCChhHHHHHHhcccceeehhhHhh
Confidence 6666553322 122456799999999987
No 101
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=72.91 E-value=16 Score=31.35 Aligned_cols=79 Identities=18% Similarity=0.153 Sum_probs=49.0
Q ss_pred cccEEEEEeccC-CCCCchHHHHHHHHHHHhCCCeEEEEeccC--CCCchhhhhhhHHHHHHcCCceeehhchhHH-HHh
Q 023401 73 KSKLVLLVSHEL-SLSGGPLLLMELAFLLRGVGTKVNWITIQK--PSEEDEVIYSLEHKMWDRGVQVISAKGQETI-NTA 148 (282)
Q Consensus 73 ~~KkILLISHEL-s~TGAPLlLleLA~~Lkq~G~~V~vL~~~~--G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i-~~a 148 (282)
+|++|.+|++ . |+ +.-.++..|...|.++.+++-.+ =+...+++...++.+++.|.++.-. ..+ +.+
T Consensus 1 ~gl~i~~vGD-~~~r-----v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~---~~~~e~l 71 (158)
T PF00185_consen 1 KGLKIAYVGD-GHNR-----VAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT---DDIEEAL 71 (158)
T ss_dssp TTEEEEEESS-TTSH-----HHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE---SSHHHHH
T ss_pred CCCEEEEECC-CCCh-----HHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE---eCHHHhc
Confidence 6899999995 3 33 34455566777799977777433 1112245444555566666544432 123 357
Q ss_pred hccCEEEEechh
Q 023401 149 LKADLIVLNTAV 160 (282)
Q Consensus 149 ~~~DLVIaNT~v 160 (282)
.++|.|+..+..
T Consensus 72 ~~aDvvy~~~~~ 83 (158)
T PF00185_consen 72 KGADVVYTDRWQ 83 (158)
T ss_dssp TT-SEEEEESSS
T ss_pred CCCCEEEEcCcc
Confidence 789999999997
No 102
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=72.91 E-value=22 Score=31.94 Aligned_cols=129 Identities=23% Similarity=0.277 Sum_probs=76.0
Q ss_pred cEEEEEecc---CCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh----hc-hhHHH
Q 023401 75 KLVLLVSHE---LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA----KG-QETIN 146 (282)
Q Consensus 75 KkILLISHE---Ls~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~----k~-~~~i~ 146 (282)
|+|.+|++- +...|==-+.=||+..|.+.|++|.|-+..+..+.. +... +|+.++.- .+ -++|.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~------~~~y--~gv~l~~i~~~~~g~~~si~ 73 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK------EFEY--NGVRLVYIPAPKNGSAESII 73 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC------Cccc--CCeEEEEeCCCCCCchHHHH
Confidence 567777776 566777788899999999999999999865442111 1122 35444422 22 23332
Q ss_pred -------Hhh--------ccCEEEE--ec--hhchHHHHHHhhccCCCCCCceEEEeeecc----------ccccc----
Q 023401 147 -------TAL--------KADLIVL--NT--AVAGKWLDAVLKEDVPRVLPNVLWWIHEMR----------GHYFK---- 193 (282)
Q Consensus 147 -------~a~--------~~DLVIa--NT--~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r----------~~Yf~---- 193 (282)
.+. +.|.|+. ++ .....+++.+. ....|++-=+|..+ +.|+.
T Consensus 74 yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~-----~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~ 148 (185)
T PF09314_consen 74 YDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLR-----KKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEK 148 (185)
T ss_pred HHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhh-----hcCCcEEECCCcchhhhhhcCHHHHHHHHHHHH
Confidence 122 2454443 33 22344555442 11227888888776 22443
Q ss_pred --ccccccccccccccccchhhHHHHHHhhh
Q 023401 194 --LDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (282)
Q Consensus 194 --l~~vkhL~~v~~~~~dS~Ata~~w~~~~~ 222 (282)
..+..+|+ .||..-++|++++++
T Consensus 149 ~avk~ad~lI------aDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 149 LAVKYADRLI------ADSKGIQDYIKERYG 173 (185)
T ss_pred HHHHhCCEEE------EcCHHHHHHHHHHcC
Confidence 23334444 459999999999997
No 103
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=72.82 E-value=21 Score=39.06 Aligned_cols=104 Identities=22% Similarity=0.233 Sum_probs=64.6
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (282)
....+||++.+.+ .|-....+++.|++.|.+|+....+....++.- . ...++..+..++.+.....+.
T Consensus 315 ~~~L~GKrv~i~~-------g~~~~~~la~~l~elGmevv~~g~~~~~~~d~~--~-~~~~~~~~~~vi~~~d~~el~~~ 384 (917)
T PRK14477 315 RARLEGKRVVLFT-------GGVKTWSMVNALRELGVEVLAAGTQNSTLEDFA--R-MKALMHKDAHIIEDTSTAGLLRV 384 (917)
T ss_pred HHHccCCEEEEEC-------CCchHHHHHHHHHHCCCEEEEEcCCCCCHHHHH--H-HHHhcCCCCEEEECCCHHHHHHH
Confidence 4578999999853 445678899999999999988665544321111 1 223334466676664333333
Q ss_pred -HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccc
Q 023401 147 -TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY 191 (282)
Q Consensus 147 -~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Y 191 (282)
...+.||+|.|+-. +++. .|.++ |.+-+.|+-++-|
T Consensus 385 i~~~~pDLlig~~~~--~~~a--~k~gi-----P~~~~~~~~~~p~ 421 (917)
T PRK14477 385 MREKMPDLIVAGGKT--KFLA--LKTRT-----PFLDINHGRSHPY 421 (917)
T ss_pred HHhcCCCEEEecCch--hhHH--HHcCC-----CeEEccCCccCCc
Confidence 24589999998863 3332 12344 7777777655433
No 104
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=72.59 E-value=80 Score=29.09 Aligned_cols=82 Identities=21% Similarity=0.324 Sum_probs=53.1
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch--------hHHH--HhhccCEEEEec-hhc
Q 023401 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--------ETIN--TALKADLIVLNT-AVA 161 (282)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~--------~~i~--~a~~~DLVIaNT-~v~ 161 (282)
.+.||+.|++.|.+|..++...++ .+.+.+.+.|.+++.-... +..+ ...++|+||+-. -..
T Consensus 20 cl~LA~~l~~~g~~v~f~~~~~~~-------~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~~ 92 (279)
T TIGR03590 20 CLTLARALHAQGAEVAFACKPLPG-------DLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGLD 92 (279)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCH-------HHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 578999999999999999966542 3467888899988733211 1122 233689988866 345
Q ss_pred hHHHHHHhhccCCCCCCceEEEeeec
Q 023401 162 GKWLDAVLKEDVPRVLPNVLWWIHEM 187 (282)
Q Consensus 162 g~wl~~l~~~~~~~~~~pVIWWIHE~ 187 (282)
..|...+. ... +.+-.|=+.
T Consensus 93 ~~~~~~~k-~~~-----~~l~~iDD~ 112 (279)
T TIGR03590 93 ADWEKLIK-EFG-----RKILVIDDL 112 (279)
T ss_pred HHHHHHHH-HhC-----CeEEEEecC
Confidence 66766653 332 444466554
No 105
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=71.57 E-value=17 Score=35.57 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccCEEEEechhc--hHHHHHHh
Q 023401 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVA--GKWLDAVL 169 (282)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~DLVIaNT~v~--g~wl~~l~ 169 (282)
=|--||++|++.|++|.+.=. .+ .. ....++.+.|+++........ ...++|+||...++. .+.+....
T Consensus 11 gm~~la~~l~~~G~~V~~~D~--~~-~~----~~~~~l~~~gi~~~~~~~~~~--~~~~~d~vV~SpgI~~~~~~~~~a~ 81 (448)
T TIGR01081 11 FMGGLAMIAKQLGHEVTGSDA--NV-YP----PMSTQLEAQGIEIIEGFDAAQ--LEPKPDLVVIGNAMKRGNPCVEAVL 81 (448)
T ss_pred hHHHHHHHHHhCCCEEEEECC--CC-Cc----HHHHHHHHCCCEEeCCCCHHH--CCCCCCEEEECCCCCCCCHHHHHHH
Confidence 577899999999999865221 11 11 123356667999886433322 234699999999985 45666665
Q ss_pred hccC
Q 023401 170 KEDV 173 (282)
Q Consensus 170 ~~~~ 173 (282)
+.+.
T Consensus 82 ~~~i 85 (448)
T TIGR01081 82 NLNL 85 (448)
T ss_pred HCCC
Confidence 4444
No 106
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=71.39 E-value=21 Score=36.34 Aligned_cols=79 Identities=10% Similarity=0.115 Sum_probs=49.4
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (282)
.+..||++.+.. .|-....+++.|. +.|.+|+.+........+. +++.+.+.+..+........+.
T Consensus 289 ~~l~Gkrv~I~g-------d~~~a~~l~~~L~~ElGm~vv~~gt~~~~~~~~----~~~~~~~~~~~~~i~~D~~el~~~ 357 (519)
T PRK02910 289 TYLTGKRVFVFG-------DATHAVAAARILSDELGFEVVGAGTYLREDARW----VRAAAKEYGDEALITDDYLEVEDA 357 (519)
T ss_pred HhhcCCEEEEEc-------CcHHHHHHHHHHHHhcCCeEEEEecCCcchhHH----HHHHHHhcCCCeEEecCHHHHHHH
Confidence 577999987664 3678889999998 7999998776543322222 3444444444433211122222
Q ss_pred -HhhccCEEEEech
Q 023401 147 -TALKADLIVLNTA 159 (282)
Q Consensus 147 -~a~~~DLVIaNT~ 159 (282)
...+.|+||.|+-
T Consensus 358 i~~~~PdliiG~~~ 371 (519)
T PRK02910 358 IAEAAPELVLGTQM 371 (519)
T ss_pred HHhcCCCEEEEcch
Confidence 2457999999984
No 107
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=71.15 E-value=11 Score=29.85 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccCEEEEechhchHHHHH
Q 023401 94 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDA 167 (282)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~DLVIaNT~v~g~wl~~ 167 (282)
.|....|++.|.++.+++|....... .+.+++.+.|+++-+ |-|+...-+++.|+.+
T Consensus 20 ~e~l~~L~~~g~~~~~lTNns~~s~~----~~~~~L~~~Gi~~~~-------------~~i~ts~~~~~~~l~~ 76 (101)
T PF13344_consen 20 VEALDALRERGKPVVFLTNNSSRSRE----EYAKKLKKLGIPVDE-------------DEIITSGMAAAEYLKE 76 (101)
T ss_dssp HHHHHHHHHTTSEEEEEES-SSS-HH----HHHHHHHHTTTT--G-------------GGEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHH----HHHHHHHhcCcCCCc-------------CEEEChHHHHHHHHHh
Confidence 57889999999999999987653222 357888888997522 4466666666777664
No 108
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=70.96 E-value=40 Score=31.43 Aligned_cols=85 Identities=25% Similarity=0.257 Sum_probs=56.8
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc-----h---hHH
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-----Q---ETI 145 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~-----~---~~i 145 (282)
.+.|.|++ .+.+|=.-....||..|++.|..|.++...-- ...-+..|..-..++|++++.... . +.+
T Consensus 72 ~~vi~l~G--~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~--r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 72 PNVILFVG--VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF--RAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CeEEEEEC--CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC--CHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 35566664 78889999999999999999999999984321 011122445555667888874321 1 112
Q ss_pred H--HhhccCEEEEechhch
Q 023401 146 N--TALKADLIVLNTAVAG 162 (282)
Q Consensus 146 ~--~a~~~DLVIaNT~v~g 162 (282)
. ...++|+||+.|+-..
T Consensus 148 ~~~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHHHCCCCEEEEeCCCCC
Confidence 2 2456999999999654
No 109
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=70.68 E-value=9.4 Score=40.57 Aligned_cols=82 Identities=26% Similarity=0.338 Sum_probs=55.7
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----CchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----EEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----~~~~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (282)
.+|++++| |+-++-+|+|..|++.|.+|.++...... .+.+....+.+.+.++||++.......++.
T Consensus 139 ~~k~vvVV-------GgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~ 211 (785)
T TIGR02374 139 RFKKAAVI-------GGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGA 211 (785)
T ss_pred cCCeEEEE-------CCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcC
Confidence 46788887 66678899999999999999988733221 123334456777888899988664322221
Q ss_pred -----------HhhccCEEEEechhc
Q 023401 147 -----------TALKADLIVLNTAVA 161 (282)
Q Consensus 147 -----------~a~~~DLVIaNT~v~ 161 (282)
....+|+||.-+-+.
T Consensus 212 ~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 212 TKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred CceEEEEECCCCEEEcCEEEECCCCC
Confidence 124589999877654
No 110
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=70.10 E-value=1e+02 Score=29.40 Aligned_cols=136 Identities=14% Similarity=0.092 Sum_probs=63.0
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCC---eEEEEe--ccCCCCchhhhhhhHHHHHHcCCceee------hh--
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGT---KVNWIT--IQKPSEEDEVIYSLEHKMWDRGVQVIS------AK-- 140 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~---~V~vL~--~~~G~~~~~v~~~L~~kll~rgI~v~~------~k-- 140 (282)
.||||++|=+. .+|-=-+--.|...|.+.|. ++.++= ...++.-+.++.....++.++.-.... ++
T Consensus 5 ~~~vlil~~~~-G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~~~~~~ 83 (391)
T PRK13608 5 NKKILIITGSF-GNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYSRPDKL 83 (391)
T ss_pred CceEEEEECCC-CchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHcCchhh
Confidence 47899999333 33554555667777776653 344322 222322233333333444433211110 00
Q ss_pred --------chhHH-H--HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc-ccccccccccccccc
Q 023401 141 --------GQETI-N--TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-LDYVKHLPLVAGAMI 208 (282)
Q Consensus 141 --------~~~~i-~--~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~-l~~vkhL~~v~~~~~ 208 (282)
..+.+ + ...++|+||. |.- ...+..+. ....... |++.++++-..+-.- ..+++++...
T Consensus 84 ~~~~~~~~~~~~l~~~l~~~kPDvVi~-~~p-~~~~~~l~-~~~~~~i-P~~~v~td~~~~~~w~~~~~d~~~v~----- 154 (391)
T PRK13608 84 DKCFYKYYGLNKLINLLIKEKPDLILL-TFP-TPVMSVLT-EQFNINI-PVATVMTDYRLHKNWITPYSTRYYVA----- 154 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCEEEE-CCc-HHHHHHHH-HhcCCCC-CEEEEeCCCCcccccccCCCCEEEEC-----
Confidence 00111 1 2457999987 432 22233222 2111222 787777664322110 1234444444
Q ss_pred cchhhHHHHHHh
Q 023401 209 DSHVTAEYWKNR 220 (282)
Q Consensus 209 dS~Ata~~w~~~ 220 (282)
|+.+.++..++
T Consensus 155 -s~~~~~~l~~~ 165 (391)
T PRK13608 155 -TKETKQDFIDV 165 (391)
T ss_pred -CHHHHHHHHHc
Confidence 88888888653
No 111
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=69.47 E-value=45 Score=31.43 Aligned_cols=86 Identities=19% Similarity=0.304 Sum_probs=58.7
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH----Hh
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN----TA 148 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~----~a 148 (282)
++.++.|++- +.+|-..++..++..+.+.|..|-++....- .-..+.-+.......|+++........+. .+
T Consensus 74 ~~~~i~~~G~--~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~--ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l 149 (270)
T PRK06731 74 EVQTIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHS--RIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYF 149 (270)
T ss_pred CCCEEEEECC--CCCcHHHHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHH
Confidence 5678999987 8889999999999999888888888874422 11122333444444588887654433332 12
Q ss_pred ---hccCEEEEechhch
Q 023401 149 ---LKADLIVLNTAVAG 162 (282)
Q Consensus 149 ---~~~DLVIaNT~v~g 162 (282)
.++|+||+.|+-..
T Consensus 150 ~~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 150 KEEARVDYILIDTAGKN 166 (270)
T ss_pred HhcCCCCEEEEECCCCC
Confidence 36899999999654
No 112
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=69.00 E-value=20 Score=34.42 Aligned_cols=81 Identities=22% Similarity=0.356 Sum_probs=53.4
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC----CCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP----SEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G----~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (282)
.+|+|++| |+-..-+|+|..|++.|.+|.++..... ....++...+++.+.++||++.......++.
T Consensus 136 ~~~~vvVi-------GgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~ 208 (427)
T TIGR03385 136 KVENVVII-------GGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE 208 (427)
T ss_pred CCCeEEEE-------CCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC
Confidence 46888887 3334577999999999999999884432 1234566667888888899987542111111
Q ss_pred ---------HhhccCEEEEechh
Q 023401 147 ---------TALKADLIVLNTAV 160 (282)
Q Consensus 147 ---------~a~~~DLVIaNT~v 160 (282)
....+|.||.-|-.
T Consensus 209 ~~~v~~~~g~~i~~D~vi~a~G~ 231 (427)
T TIGR03385 209 ERVKVFTSGGVYQADMVILATGI 231 (427)
T ss_pred CCEEEEcCCCEEEeCEEEECCCc
Confidence 12357888866544
No 113
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=68.40 E-value=53 Score=34.97 Aligned_cols=172 Identities=16% Similarity=0.169 Sum_probs=93.2
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc---CCcee--eh-hchhHHH
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR---GVQVI--SA-KGQETIN 146 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r---gI~v~--~~-k~~~~i~ 146 (282)
+-.+|=.||||+.-.--=-++.++-+++-..-++|..-.+. ++..+. +.+.+.-. -++.. ++ ...++|.
T Consensus 258 ~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g-~~~~da----l~~rI~a~~~~~~~~~~~dd~e~a~~I~ 332 (620)
T COG3914 258 KRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLG-PPHTDA----LQERISAAVEKWYPIGRMDDAEIANAIR 332 (620)
T ss_pred cceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecC-CCCchh----HHHHHHHhhhheeccCCcCHHHHHHHHH
Confidence 55789999999987755558888888888878999888854 433333 34444432 22332 22 2223344
Q ss_pred HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccccccccccc-ccc-cccccchhhHHHHHHhhhhh
Q 023401 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLP-LVA-GAMIDSHVTAEYWKNRTRER 224 (282)
Q Consensus 147 ~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~l~~vkhL~-~v~-~~~~dS~Ata~~w~~~~~~~ 224 (282)
.+.+|..|-=+.....---+++ .+.| .|=.|.|+ +|+.=--..++. ++. ++|+. +..-+||+++.-
T Consensus 333 -~d~IdILvDl~g~T~d~r~~v~-A~Rp--APiqvswl-----Gy~aT~g~p~~DY~I~D~y~vP-p~ae~yysEkl~-- 400 (620)
T COG3914 333 -TDGIDILVDLDGHTVDTRCQVF-AHRP--APIQVSWL-----GYPATTGSPNMDYFISDPYTVP-PTAEEYYSEKLW-- 400 (620)
T ss_pred -hcCCeEEEeccCceeccchhhh-hcCC--CceEEeec-----ccccccCCCcceEEeeCceecC-chHHHHHHHHHH--
Confidence 5667755532222222122333 2333 33357887 888611111222 222 26666 677788887762
Q ss_pred cCCCCCCeeEEEecCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEec
Q 023401 225 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 277 (282)
Q Consensus 225 l~Ikl~~~~vv~L~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~~~ 277 (282)
++|+ |..-+|...- +-=.=-|.++|||+|.++|+--|
T Consensus 401 ---RLp~----cy~p~d~~~~---------v~p~~sR~~lglp~~avVf~c~~ 437 (620)
T COG3914 401 ---RLPQ----CYQPVDGFEP---------VTPPPSRAQLGLPEDAVVFCCFN 437 (620)
T ss_pred ---hccc----ccCCCCCccc---------CCCCcchhhcCCCCCeEEEEecC
Confidence 2331 2222222221 11112367899999999998654
No 114
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.26 E-value=28 Score=34.62 Aligned_cols=91 Identities=12% Similarity=0.058 Sum_probs=54.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhcc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~ 151 (282)
+++|+|+++. ++.||- ..|++|++.|.+|.+.-.+...+..+ ..++.+ ++..+...+.. +...++
T Consensus 6 ~~~~~v~v~G--~G~sG~-----~~~~~l~~~g~~v~~~d~~~~~~~~~-----~~~l~~-~~~~~~~~~~~--~~~~~~ 70 (468)
T PRK04690 6 LEGRRVALWG--WGREGR-----AAYRALRAHLPAQALTLFCNAVEARE-----VGALAD-AALLVETEASA--QRLAAF 70 (468)
T ss_pred cCCCEEEEEc--cchhhH-----HHHHHHHHcCCEEEEEcCCCcccchH-----HHHHhh-cCEEEeCCCCh--HHccCC
Confidence 5689999997 467775 56788999999987744332211111 123433 44443332221 224679
Q ss_pred CEEEEechhc--hHHHHHHhhccCCCCCCceEE
Q 023401 152 DLIVLNTAVA--GKWLDAVLKEDVPRVLPNVLW 182 (282)
Q Consensus 152 DLVIaNT~v~--g~wl~~l~~~~~~~~~~pVIW 182 (282)
|+||.+..+. .+.+.+..+.+. ||+.
T Consensus 71 d~vV~SpgI~~~~p~~~~a~~~~i-----~i~~ 98 (468)
T PRK04690 71 DVVVKSPGISPYRPEALAAAARGT-----PFIG 98 (468)
T ss_pred CEEEECCCCCCCCHHHHHHHHcCC-----cEEE
Confidence 9999999984 566666654444 6663
No 115
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=68.25 E-value=15 Score=34.64 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=54.2
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----CchhhhhhhHHHHHHcCCceeehhchhHH---
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----EEDEVIYSLEHKMWDRGVQVISAKGQETI--- 145 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----~~~~v~~~L~~kll~rgI~v~~~k~~~~i--- 145 (282)
.+|+|++|. +-..-+|+|..|.+.|.+|.++...... ...+....+.+.+.++|+.+........+
T Consensus 140 ~~~~vvViG-------gG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~ 212 (377)
T PRK04965 140 DAQRVLVVG-------GGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT 212 (377)
T ss_pred cCCeEEEEC-------CCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc
Confidence 467888874 3346789999999999999999844321 12344456777888889988754211111
Q ss_pred ------H----HhhccCEEEEechhc
Q 023401 146 ------N----TALKADLIVLNTAVA 161 (282)
Q Consensus 146 ------~----~a~~~DLVIaNT~v~ 161 (282)
. ....+|+||.-|-..
T Consensus 213 ~~~~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 213 DSGIRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred CCEEEEEEcCCcEEECCEEEECcCCC
Confidence 1 123589999887764
No 116
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=68.23 E-value=18 Score=33.12 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=43.0
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE---EEeccCCCCchhhhhhhHHHHHHcCCceeeh
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN---WITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~---vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
+.+|+||++| -|.-.||. ..++.++.|++.|.+|. ++..++. +..+.+.+.|+++.+=
T Consensus 109 ~~~G~kVvvV-EDViTTG~--Si~eai~~l~~~G~~V~gv~~ivDR~~--------~~~~~~~~~g~~~~sl 169 (201)
T COG0461 109 EVKGEKVVVV-EDVITTGG--SILEAVEALREAGAEVVGVAVIVDRQS--------GAKEVLKEYGVKLVSL 169 (201)
T ss_pred CCCCCEEEEE-EecccCCH--hHHHHHHHHHHcCCeEEEEEEEEecch--------hHHHHHHhcCCceEEE
Confidence 4479999888 56777887 67899999999999964 3334421 3467788889888754
No 117
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=67.20 E-value=12 Score=38.54 Aligned_cols=73 Identities=21% Similarity=0.210 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccCCC----CchhhhhhhHHHHHHcCCceeehhchhHHH---------------Hh
Q 023401 88 GGPLLLMELAFLLRGVGTKVNWITIQKPS----EEDEVIYSLEHKMWDRGVQVISAKGQETIN---------------TA 148 (282)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~G~----~~~~v~~~L~~kll~rgI~v~~~k~~~~i~---------------~a 148 (282)
|+-..+||.|..|++.+.+|.++..+..+ ...++-...++.+.+.|++.......-++. ..
T Consensus 220 G~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~ 299 (478)
T KOG1336|consen 220 GGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKT 299 (478)
T ss_pred CchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCE
Confidence 78899999999999999999999977665 455666777888888899988664333332 45
Q ss_pred hccCEEEEechh
Q 023401 149 LKADLIVLNTAV 160 (282)
Q Consensus 149 ~~~DLVIaNT~v 160 (282)
..+|+||..+-+
T Consensus 300 l~adlvv~GiG~ 311 (478)
T KOG1336|consen 300 LEADLVVVGIGI 311 (478)
T ss_pred eccCeEEEeecc
Confidence 669999998764
No 118
>PRK06114 short chain dehydrogenase; Provisional
Probab=67.00 E-value=44 Score=29.21 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=44.7
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc--eee-h-hchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VIS-A-KGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~--v~~-~-k~~~~i~- 146 (282)
+++|.+|+. +.+|+ +=.++|+.|.+.|++|.++..+... -...+.+++.+.+-+ .+. | ...+.+.
T Consensus 6 ~~~k~~lVt----G~s~g--IG~~ia~~l~~~G~~v~~~~r~~~~----~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~ 75 (254)
T PRK06114 6 LDGQVAFVT----GAGSG--IGQRIAIGLAQAGADVALFDLRTDD----GLAETAEHIEAAGRRAIQIAADVTSKADLRA 75 (254)
T ss_pred CCCCEEEEE----CCCch--HHHHHHHHHHHCCCEEEEEeCCcch----HHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 678866554 22333 6678999999999998877643221 112234455444422 221 1 2222222
Q ss_pred -------HhhccCEEEEechhc
Q 023401 147 -------TALKADLIVLNTAVA 161 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v~ 161 (282)
.....|.||.|..+.
T Consensus 76 ~~~~~~~~~g~id~li~~ag~~ 97 (254)
T PRK06114 76 AVARTEAELGALTLAVNAAGIA 97 (254)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 234579999888754
No 119
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=66.67 E-value=22 Score=34.11 Aligned_cols=88 Identities=18% Similarity=0.345 Sum_probs=57.7
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC----CCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP----SEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G----~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (282)
++++|++| |+...-+|+|..|+..|.+|.++..... ....++...+++.+.++||.+........+.
T Consensus 148 ~~~~vvVv-------GgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~ 220 (444)
T PRK09564 148 EIKNIVII-------GAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGE 220 (444)
T ss_pred CCCEEEEE-------CCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecC
Confidence 35778877 4555778999999999999998864331 1345666677888888999887542222111
Q ss_pred ----------HhhccCEEEEechhc--hHHHHH
Q 023401 147 ----------TALKADLIVLNTAVA--GKWLDA 167 (282)
Q Consensus 147 ----------~a~~~DLVIaNT~v~--g~wl~~ 167 (282)
..-.+|.||..|-.. ..+++.
T Consensus 221 ~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~ 253 (444)
T PRK09564 221 DKVEGVVTDKGEYEADVVIVATGVKPNTEFLED 253 (444)
T ss_pred CcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHh
Confidence 123589888866653 245553
No 120
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=66.60 E-value=49 Score=32.06 Aligned_cols=39 Identities=18% Similarity=-0.010 Sum_probs=31.4
Q ss_pred EEEEeccCCCC-CchHHHHHHHHHHHhC--CCeEEEEeccCC
Q 023401 77 VLLVSHELSLS-GGPLLLMELAFLLRGV--GTKVNWITIQKP 115 (282)
Q Consensus 77 ILLISHELs~T-GAPLlLleLA~~Lkq~--G~~V~vL~~~~G 115 (282)
|-|+==+++-. ||=-+|++.+..|.+. |++|++.++..-
T Consensus 3 ~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~ 44 (419)
T cd03806 3 VGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLD 44 (419)
T ss_pred EEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 44444477877 9999999999999999 889999995543
No 121
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=66.33 E-value=28 Score=27.08 Aligned_cols=45 Identities=31% Similarity=0.375 Sum_probs=34.4
Q ss_pred ccccccccE-EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 023401 68 PLSFMKSKL-VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (282)
Q Consensus 68 ~~~f~~~Kk-ILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (282)
|+.-+.... ++++| .+|..--+.+.++.+|+.|.+|+.+++..++
T Consensus 47 ~~~~~~~~d~vi~is----~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 47 PLENLDPDDLVIIIS----YSGETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp GGGGCSTTEEEEEEE----SSSTTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred hcccccccceeEeee----ccccchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 444444555 44554 6788889999999999999999999977664
No 122
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=66.32 E-value=23 Score=30.83 Aligned_cols=59 Identities=25% Similarity=0.332 Sum_probs=40.6
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe--ccCCCCchhhhhhhHHHHHHcCCceeeh
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT--IQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~--~~~G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
..+||++|+|= |.=.||+ -+.+.++.|++.|.+|+=+. -.++. +-.+++.+.|+|+..-
T Consensus 101 ~~~g~~VlIVD-Dvi~TG~--T~~~~~~~l~~~Ga~v~~~~~~vdr~~-------g~~~~l~~~gv~~~sl 161 (170)
T PRK13811 101 DVKGKRVLLVE-DVTTSGG--SALYGIEQLRAAGAVVDDVVTVVDREQ-------GAEELLAELGITLTPL 161 (170)
T ss_pred ccCCCEEEEEE-ecccccH--HHHHHHHHHHHCCCeEEEEEEEEECCc-------cHHHHHHhcCCcEEEE
Confidence 46899999885 4555666 57888999999999954333 22332 1246667789988754
No 123
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=66.02 E-value=41 Score=30.47 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=27.9
Q ss_pred cccEEEEEeccCCCC-CchHHHHHHHHHHHhCCC---eEEEEe--ccCCC
Q 023401 73 KSKLVLLVSHELSLS-GGPLLLMELAFLLRGVGT---KVNWIT--IQKPS 116 (282)
Q Consensus 73 ~~KkILLISHELs~T-GAPLlLleLA~~Lkq~G~---~V~vL~--~~~G~ 116 (282)
.+|+|++|--|.+|. ..+++|=.+..+|+.+|. ++.++. +.+++
T Consensus 53 ~~~~V~Ivv~D~TRp~p~~~il~~ll~~L~~~Gv~~~~i~ii~A~G~Hr~ 102 (204)
T PF09861_consen 53 PGKRVAIVVDDITRPTPSDLILPALLEELEEAGVKDEDITIIIALGTHRP 102 (204)
T ss_dssp T-SEEEEEEE-TTS---HHHHHHHHHHHHHT-T-TT-EEEEEEE-TTS--
T ss_pred CCCeEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCccCEEEEEeCCCCCC
Confidence 359999999999998 334677778899999888 566665 44443
No 124
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=65.98 E-value=23 Score=28.92 Aligned_cols=72 Identities=22% Similarity=0.162 Sum_probs=43.0
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh-----hc--hhHHHH
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-----KG--QETINT 147 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~-----k~--~~~i~~ 147 (282)
|||++.- +.+++-+-..++.+.|++.|++|.++..+.+. . .+..+. ..+-++..+ .. ..-+..
T Consensus 1 k~i~l~v---tGs~~~~~~~~~l~~L~~~g~~v~vv~S~~A~---~---~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~ 70 (129)
T PF02441_consen 1 KRILLGV---TGSIAAYKAPDLLRRLKRAGWEVRVVLSPSAE---R---FVTPEG-LTGEPVYTDWDTWDRGDPAEHIEL 70 (129)
T ss_dssp -EEEEEE----SSGGGGGHHHHHHHHHTTTSEEEEEESHHHH---H---HSHHHG-HCCSCEECTHCTCSTTTTTCHHHH
T ss_pred CEEEEEE---ECHHHHHHHHHHHHHHhhCCCEEEEEECCcHH---H---Hhhhhc-cccchhhhccccCCCCCCcCcccc
Confidence 3444442 34555555889999999999999999966552 1 222333 334455544 11 112335
Q ss_pred hhccCEEEE
Q 023401 148 ALKADLIVL 156 (282)
Q Consensus 148 a~~~DLVIa 156 (282)
...+|++++
T Consensus 71 ~~~~D~~vV 79 (129)
T PF02441_consen 71 SRWADAMVV 79 (129)
T ss_dssp HHTESEEEE
T ss_pred cccCCEEEE
Confidence 677999986
No 125
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=65.76 E-value=40 Score=27.80 Aligned_cols=79 Identities=22% Similarity=0.279 Sum_probs=47.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhcc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~ 151 (282)
.++|++++|+ +|+ .--..+..|.+.|..=+.+.++..+ -...|.+++....+....-. +.-....++
T Consensus 10 l~~~~vlviG-----aGg--~ar~v~~~L~~~g~~~i~i~nRt~~----ra~~l~~~~~~~~~~~~~~~--~~~~~~~~~ 76 (135)
T PF01488_consen 10 LKGKRVLVIG-----AGG--AARAVAAALAALGAKEITIVNRTPE----RAEALAEEFGGVNIEAIPLE--DLEEALQEA 76 (135)
T ss_dssp GTTSEEEEES-----SSH--HHHHHHHHHHHTTSSEEEEEESSHH----HHHHHHHHHTGCSEEEEEGG--GHCHHHHTE
T ss_pred cCCCEEEEEC-----CHH--HHHHHHHHHHHcCCCEEEEEECCHH----HHHHHHHHcCccccceeeHH--HHHHHHhhC
Confidence 5799999996 344 4445678888899995556656431 12234444422234444332 212357889
Q ss_pred CEEEEechhchH
Q 023401 152 DLIVLNTAVAGK 163 (282)
Q Consensus 152 DLVIaNT~v~g~ 163 (282)
|+||.-|-+...
T Consensus 77 DivI~aT~~~~~ 88 (135)
T PF01488_consen 77 DIVINATPSGMP 88 (135)
T ss_dssp SEEEE-SSTTST
T ss_pred CeEEEecCCCCc
Confidence 999988887544
No 126
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=65.41 E-value=18 Score=35.84 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=47.9
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc-------hh
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-------QE 143 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~-------~~ 143 (282)
.+++|+|++. .+.+.|-+-..++.+.|++.|++|.++..+... .++.+..=+.+ .|-+|+.+.. ..
T Consensus 3 ~l~~k~Illg---vTGsiaa~k~~~lv~~L~~~g~~V~vv~T~~A~---~fi~~~~l~~l-~~~~V~~~~~~~~~~~~~~ 75 (399)
T PRK05579 3 MLAGKRIVLG---VSGGIAAYKALELVRRLRKAGADVRVVMTEAAK---KFVTPLTFQAL-SGNPVSTDLWDPAAEAAMG 75 (399)
T ss_pred CCCCCeEEEE---EeCHHHHHHHHHHHHHHHhCCCEEEEEECHhHH---HHHhHHHHHHh-hCCceEccccccccCCCcc
Confidence 4678888875 233333455688999999999999999866442 33333221111 1456665421 12
Q ss_pred HHHHhhccCEEEE
Q 023401 144 TINTALKADLIVL 156 (282)
Q Consensus 144 ~i~~a~~~DLVIa 156 (282)
-+..+..+|++++
T Consensus 76 hi~l~~~aD~~vV 88 (399)
T PRK05579 76 HIELAKWADLVLI 88 (399)
T ss_pred hhhcccccCEEEE
Confidence 3555667998885
No 127
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=65.06 E-value=51 Score=33.27 Aligned_cols=86 Identities=23% Similarity=0.250 Sum_probs=56.2
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc--------hhHH
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------QETI 145 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~--------~~~i 145 (282)
...|+|++ ...+|=--....||..|++.|..|.++.+..-. .-...-|.....+.|++++.... .+.+
T Consensus 95 p~vI~lvG--~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R--~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 95 PQTIMLVG--LQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR--PAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CeEEEEEC--CCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC--HHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45677776 588899999999999999999999998854221 11111233333345888875421 1223
Q ss_pred HHhhccCEEEEechhchH
Q 023401 146 NTALKADLIVLNTAVAGK 163 (282)
Q Consensus 146 ~~a~~~DLVIaNT~v~g~ 163 (282)
+.+...|+||+.|+-...
T Consensus 171 ~~~~~~DvVIIDTAGr~~ 188 (437)
T PRK00771 171 EKFKKADVIIVDTAGRHA 188 (437)
T ss_pred HHhhcCCEEEEECCCccc
Confidence 355668999999995433
No 128
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=64.80 E-value=24 Score=35.02 Aligned_cols=78 Identities=27% Similarity=0.296 Sum_probs=49.4
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH---
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN--- 146 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~--- 146 (282)
.+..||+|.+.. .|-....+++.|.+.|.+|..+....+.+ .++++....+ +..|. ..+.
T Consensus 307 ~~l~Gkrvai~~-------~~~~~~~l~~~l~elGm~v~~~~~~~~~~-------~~~~~~~~~~-~~~D~--~~l~~~i 369 (432)
T TIGR01285 307 FFLGGKKVAIAA-------EPDLLAAWATFFTSMGAQIVAAVTTTGSP-------LLQKLPVETV-VIGDL--EDLEDLA 369 (432)
T ss_pred HhhCCCEEEEEc-------CHHHHHHHHHHHHHCCCEEEEEEeCCCCH-------HHHhCCcCcE-EeCCH--HHHHHHH
Confidence 467899997764 45577999999999999999888655531 1233222222 22332 2222
Q ss_pred HhhccCEEEEechhchHHHH
Q 023401 147 TALKADLIVLNTAVAGKWLD 166 (282)
Q Consensus 147 ~a~~~DLVIaNT~v~g~wl~ 166 (282)
...++|+||.|+-. +++.
T Consensus 370 ~~~~~dliig~s~~--k~~A 387 (432)
T TIGR01285 370 CAAGADLLITNSHG--RALA 387 (432)
T ss_pred hhcCCCEEEECcch--HHHH
Confidence 23579999999963 4444
No 129
>PRK14974 cell division protein FtsY; Provisional
Probab=64.38 E-value=54 Score=31.90 Aligned_cols=85 Identities=24% Similarity=0.264 Sum_probs=56.1
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc--------hhHH
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------QETI 145 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~--------~~~i 145 (282)
.+.|+|++ .+.+|=--.+-.||..|++.|..|.++.+..- ...-+.-|.......|++++...+ ...+
T Consensus 140 ~~vi~~~G--~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~--R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 140 PVVIVFVG--VNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF--RAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CeEEEEEc--CCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC--cHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 35677776 88899999999999999999999988773311 111112333344445888875421 1122
Q ss_pred H--HhhccCEEEEechhch
Q 023401 146 N--TALKADLIVLNTAVAG 162 (282)
Q Consensus 146 ~--~a~~~DLVIaNT~v~g 162 (282)
+ .+.++|+|++.|+-..
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 2 2457999999999653
No 130
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=64.25 E-value=36 Score=36.19 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=51.5
Q ss_pred ccccEEEEEeccCCCCCchHHHHH-HHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLME-LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLle-LA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~ 150 (282)
|+-|+|++|. +..+| |. ||++|++.|++|.+.=.+ . .. ..+++.+.|+++...... .....
T Consensus 2 ~~~~~i~viG--~G~sG-----~salA~~L~~~G~~V~~sD~~-~--~~-----~~~~L~~~gi~~~~g~~~---~~~~~ 63 (809)
T PRK14573 2 MKSLFYHFIG--IGGIG-----MSALAHILLDRGYSVSGSDLS-E--GK-----TVEKLKAKGARFFLGHQE---EHVPE 63 (809)
T ss_pred CCcceEEEEE--ecHHh-----HHHHHHHHHHCCCeEEEECCC-C--Ch-----HHHHHHHCCCEEeCCCCH---HHcCC
Confidence 3445677765 34444 44 499999999998753221 1 11 234577789998754322 22457
Q ss_pred cCEEEEechhc--hHHHHHHhhccC
Q 023401 151 ADLIVLNTAVA--GKWLDAVLKEDV 173 (282)
Q Consensus 151 ~DLVIaNT~v~--g~wl~~l~~~~~ 173 (282)
+|+||.+..+. .+.+.+..+.+.
T Consensus 64 ~d~vV~SpgI~~~~p~~~~a~~~gi 88 (809)
T PRK14573 64 DAVVVYSSSISKDNVEYLSAKSRGN 88 (809)
T ss_pred CCEEEECCCcCCCCHHHHHHHHCCC
Confidence 99999999875 345555543444
No 131
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=63.29 E-value=36 Score=32.18 Aligned_cols=82 Identities=23% Similarity=0.286 Sum_probs=52.7
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH-H
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-T 147 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~-~ 147 (282)
....+||++++. |.|-..+.+++.|++.|.+|..+....+.+...- . ..++...+..++.......+. .
T Consensus 274 ~~~l~g~~~~i~-------~~~~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~d~~~~~~~ 343 (399)
T cd00316 274 HEYLGGKKVAIF-------GDGDLLLALARFLLELGMEVVAAGTTFGHKADYE--R-REELLGEGTEVVDDGDLEELEEL 343 (399)
T ss_pred HHHhcCCEEEEE-------CCCcHHHHHHHHHHHCCCEEEEEEeCCCCHHHHH--H-HHHhcCCCCEEEeCCCHHHHHHH
Confidence 356789998664 3345777788999999999888875444311110 0 233555677777665555544 2
Q ss_pred --hhccCEEEEechh
Q 023401 148 --ALKADLIVLNTAV 160 (282)
Q Consensus 148 --a~~~DLVIaNT~v 160 (282)
-.++|++|.++..
T Consensus 344 ~~~~~pdl~ig~~~~ 358 (399)
T cd00316 344 IRELKPDLIIGGSKG 358 (399)
T ss_pred HhhcCCCEEEECCcH
Confidence 2359999999864
No 132
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=63.27 E-value=31 Score=32.90 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=53.3
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----CchhhhhhhHHHHHHcCCceeehhchhHH---
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----EEDEVIYSLEHKMWDRGVQVISAKGQETI--- 145 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----~~~~v~~~L~~kll~rgI~v~~~k~~~~i--- 145 (282)
.+|+|++| |+-..-+|+|..|++.|.+|.++...... ...++...+.+.+.++||.+........+
T Consensus 143 ~~~~vvVi-------GgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~ 215 (396)
T PRK09754 143 PERSVVIV-------GAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDG 215 (396)
T ss_pred cCCeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcC
Confidence 36778777 44567889999999999999988743221 23344445677778889988855322211
Q ss_pred -----H----HhhccCEEEEechh
Q 023401 146 -----N----TALKADLIVLNTAV 160 (282)
Q Consensus 146 -----~----~a~~~DLVIaNT~v 160 (282)
. ....+|+||..+-+
T Consensus 216 ~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 216 EKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred CEEEEEECCCCEEECCEEEECCCC
Confidence 1 12358999986654
No 133
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=62.81 E-value=22 Score=27.21 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee--ehh---chh-HHH--HhhccCEEEEech
Q 023401 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--SAK---GQE-TIN--TALKADLIVLNTA 159 (282)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~--~~k---~~~-~i~--~a~~~DLVIaNT~ 159 (282)
++++|+.|.+.|+++.... | ..+-+.+.|+++- ..+ +.. ..+ ...++|+||.++-
T Consensus 2 ~~~~~~~l~~lG~~i~AT~---g---------Ta~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 2 LVELAKRLAELGFELVATG---G---------TAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHHHHHCCCEEEEcc---H---------HHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCC
Confidence 5689999999999987544 3 2345556788763 111 112 222 3678999998763
No 134
>PRK10785 maltodextrin glucosidase; Provisional
Probab=62.71 E-value=80 Score=32.79 Aligned_cols=124 Identities=16% Similarity=0.267 Sum_probs=70.1
Q ss_pred HHHHHHHHHhCCCeEEEEec--cCCC----------------CchhhhhhhHHHHHHcCCceeehhchhHHHHhhccCEE
Q 023401 93 LMELAFLLRGVGTKVNWITI--QKPS----------------EEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (282)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~--~~G~----------------~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~DLV 154 (282)
+.+=..+|++.|++.++|+- ..+. ++.+-...|.+++-++||.|+.| +|
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD-------------~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLD-------------GV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEE-------------EC
Confidence 45566999999999999981 1111 23344566677777778888766 45
Q ss_pred EEechhchHHHHHHhhcc---CCCCCCceE-EEeeeccccccccccccccc-------ccccccccch-hhHHHHHHh-h
Q 023401 155 VLNTAVAGKWLDAVLKED---VPRVLPNVL-WWIHEMRGHYFKLDYVKHLP-------LVAGAMIDSH-VTAEYWKNR-T 221 (282)
Q Consensus 155 IaNT~v~g~wl~~l~~~~---~~~~~~pVI-WWIHE~r~~Yf~l~~vkhL~-------~v~~~~~dS~-Ata~~w~~~-~ 221 (282)
+--|.....|.+...+.. .....+|.- |+.+...+.|..+.-+.++| .|..+++++. .+++||.+. +
T Consensus 248 ~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~ 327 (598)
T PRK10785 248 FNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPY 327 (598)
T ss_pred CCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCC
Confidence 545555566766543100 000112332 44444445554433344454 4455677653 578888886 5
Q ss_pred h-hhcCCCC
Q 023401 222 R-ERLRIKM 229 (282)
Q Consensus 222 ~-~~l~Ikl 229 (282)
+ |..++-.
T Consensus 328 giDG~RlDv 336 (598)
T PRK10785 328 NIDGWRLDV 336 (598)
T ss_pred CCcEEEEec
Confidence 5 6555544
No 135
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=62.50 E-value=31 Score=30.40 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=41.6
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE---EEeccCCCCchhhhhhhHHHHHHcCCceeeh
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN---WITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~---vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
..+||+||+| .|.=.||. -+.+....|++.|.+++ ++..++. +..+++.+.|+++..-
T Consensus 110 ~~~g~~VliV-DDvi~tG~--Tl~~~~~~l~~~Ga~~v~~~vlv~~~~--------~~~~~~~~~g~~~~sl 170 (202)
T PRK00455 110 RLFGKRVLVV-EDVITTGG--SVLEAVEAIRAAGAEVVGVAVIVDRQS--------AAQEVFADAGVPLISL 170 (202)
T ss_pred CCCCCEEEEE-ecccCCcH--HHHHHHHHHHHcCCEEEEEEEEEECcc--------hHHHHHHhcCCcEEEE
Confidence 3469999999 77778888 67788999999998863 3334421 2245666779888754
No 136
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=62.39 E-value=1.8e+02 Score=30.90 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=45.0
Q ss_pred ccccccccEEEEEeccCCCCCchHHHH----HHHHHHHhCCC--------eEEEEeccCCC-CchhhhhhhHHHHHHcCC
Q 023401 68 PLSFMKSKLVLLVSHELSLSGGPLLLM----ELAFLLRGVGT--------KVNWITIQKPS-EEDEVIYSLEHKMWDRGV 134 (282)
Q Consensus 68 ~~~f~~~KkILLISHELs~TGAPLlLl----eLA~~Lkq~G~--------~V~vL~~~~G~-~~~~v~~~L~~kll~rgI 134 (282)
|-+|+ | .+.++|-.|+-.||--=+. |++++.+|.|- +|.+++..--+ .+.++ ..+.+.+.+|
T Consensus 157 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 231 (578)
T PRK15490 157 PVGSF-G-RLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDF---FLKEVLEEQV 231 (578)
T ss_pred Ccccc-c-ceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcch---hHHHHHhcCC
Confidence 44454 2 4899999999999977666 88899999877 78888832222 22233 3455666788
Q ss_pred cee
Q 023401 135 QVI 137 (282)
Q Consensus 135 ~v~ 137 (282)
+|+
T Consensus 232 ~~~ 234 (578)
T PRK15490 232 EVL 234 (578)
T ss_pred ceE
Confidence 876
No 137
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=61.39 E-value=70 Score=32.48 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=61.9
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHH---
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETI--- 145 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i--- 145 (282)
...-.++.|+|++ .+.+|-.-.+..||..+...|..|.++....-- .+- +.-|.......|+++........+
T Consensus 201 ~~~~~~~ii~lvG--ptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR-~gA-veQLk~yae~lgvpv~~~~dp~dL~~a 276 (407)
T PRK12726 201 FDLSNHRIISLIG--QTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR-SGA-VEQFQGYADKLDVELIVATSPAELEEA 276 (407)
T ss_pred ceecCCeEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC-ccH-HHHHHHHhhcCCCCEEecCCHHHHHHH
Confidence 3444566666776 468899999999999998889999998843210 011 123333333458887754333333
Q ss_pred -HHh---hccCEEEEechhc----hHHHHHHh
Q 023401 146 -NTA---LKADLIVLNTAVA----GKWLDAVL 169 (282)
Q Consensus 146 -~~a---~~~DLVIaNT~v~----g~wl~~l~ 169 (282)
+.+ .++|+||+.|+-. ..+++++.
T Consensus 277 l~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~ 308 (407)
T PRK12726 277 VQYMTYVNCVDHILIDTVGRNYLAEESVSEIS 308 (407)
T ss_pred HHHHHhcCCCCEEEEECCCCCccCHHHHHHHH
Confidence 222 4689999999976 34555554
No 138
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=61.37 E-value=67 Score=32.04 Aligned_cols=87 Identities=21% Similarity=0.156 Sum_probs=55.7
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHH--hCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhH----
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLR--GVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQET---- 144 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lk--q~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~---- 144 (282)
.-.|+.|+|++- +.+|=--.+..||..+. ..|..|.++....-- .+- ...|..-....|+++........
T Consensus 218 ~~~~~~i~~vGp--tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r-~~a-~eqL~~~a~~~~vp~~~~~~~~~l~~~ 293 (424)
T PRK05703 218 LKQGGVVALVGP--TGVGKTTTLAKLAARYALLYGKKKVALITLDTYR-IGA-VEQLKTYAKIMGIPVEVVYDPKELAKA 293 (424)
T ss_pred ccCCcEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH-HHH-HHHHHHHHHHhCCceEccCCHHhHHHH
Confidence 334778888877 88899999999998886 568899998843210 000 11122222335787765433332
Q ss_pred HHHhhccCEEEEechhc
Q 023401 145 INTALKADLIVLNTAVA 161 (282)
Q Consensus 145 i~~a~~~DLVIaNT~v~ 161 (282)
+..+.++|+||+.|.-.
T Consensus 294 l~~~~~~DlVlIDt~G~ 310 (424)
T PRK05703 294 LEQLRDCDVILIDTAGR 310 (424)
T ss_pred HHHhCCCCEEEEeCCCC
Confidence 33456799999999843
No 139
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=60.76 E-value=57 Score=27.54 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=26.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
|++|+||+.. -||+ +=.++++.|.+.|++|.++..+
T Consensus 3 ~~~~~vlItG----~sg~--iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 3 LEGKVALVTG----ASRG--IGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCCCEEEEEC----CCch--HHHHHHHHHHHCCCEEEEEeCC
Confidence 4667777765 3444 6678999999999998777744
No 140
>PRK10637 cysG siroheme synthase; Provisional
Probab=60.61 E-value=35 Score=34.02 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=45.5
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhcc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~ 151 (282)
++||+||+|+ |+.+..=.+ +.|.+.|..|.+++ ++..+++ .+......+......++.. ...++
T Consensus 10 l~~~~vlvvG------gG~vA~rk~-~~ll~~ga~v~vis---p~~~~~~----~~l~~~~~i~~~~~~~~~~--dl~~~ 73 (457)
T PRK10637 10 LRDRDCLLVG------GGDVAERKA-RLLLDAGARLTVNA---LAFIPQF----TAWADAGMLTLVEGPFDES--LLDTC 73 (457)
T ss_pred cCCCEEEEEC------CCHHHHHHH-HHHHHCCCEEEEEc---CCCCHHH----HHHHhCCCEEEEeCCCChH--HhCCC
Confidence 6899999995 788776555 55556799999998 4333333 2222222455555544432 35788
Q ss_pred CEEEEec
Q 023401 152 DLIVLNT 158 (282)
Q Consensus 152 DLVIaNT 158 (282)
++||+-|
T Consensus 74 ~lv~~at 80 (457)
T PRK10637 74 WLAIAAT 80 (457)
T ss_pred EEEEECC
Confidence 9999877
No 141
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=60.51 E-value=72 Score=25.89 Aligned_cols=79 Identities=19% Similarity=0.143 Sum_probs=49.6
Q ss_pred EEEEEeccCCCCCchHHHHHH-HHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccCEE
Q 023401 76 LVLLVSHELSLSGGPLLLMEL-AFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleL-A~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~DLV 154 (282)
||++|+......|---.|++. ++.|++.|+++.++-..+-+ + +......... ....+.-++-.+...++|.|
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~----~-p~~~~~~~~~--~~~~d~~~~~~~~l~~aD~i 74 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYP----L-PCCDGDFECP--CYIPDDVQELYDKLKEADGI 74 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSH----C-HHHHHHHHHT--GCTSHHHHHHHHHHHHSSEE
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccc----h-hhcccccccc--cCCcHHHHHHHhceecCCeE
Confidence 799999888766666556554 58888889999999743321 1 1112222111 33344344445578899999
Q ss_pred EEechhc
Q 023401 155 VLNTAVA 161 (282)
Q Consensus 155 IaNT~v~ 161 (282)
|.-|=+=
T Consensus 75 I~~sP~y 81 (152)
T PF03358_consen 75 IFASPVY 81 (152)
T ss_dssp EEEEEEB
T ss_pred EEeecEE
Confidence 9988654
No 142
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=60.31 E-value=29 Score=24.55 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=27.4
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Q 023401 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275 (282)
Q Consensus 238 ~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~ 275 (282)
|.+++.-+ ++.+ .+-+.+.+.+|+|++|+-|.+
T Consensus 11 grs~eqk~----~l~~-~it~~l~~~~~~p~~~v~V~i 43 (62)
T PRK00745 11 GRTVEQKR----KLVE-EITRVTVETLGCPPESVDIII 43 (62)
T ss_pred CCCHHHHH----HHHH-HHHHHHHHHcCCChhHEEEEE
Confidence 56777777 7887 788899999999999997765
No 143
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=60.12 E-value=39 Score=33.00 Aligned_cols=77 Identities=8% Similarity=0.061 Sum_probs=46.8
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhchhHHH
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKGQETIN 146 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~~~v~~~L~~kll~r--gI~v~~~k~~~~i~ 146 (282)
++..||++.++. .|.....+++.|. +.|.+++.+....+.. .+ -++.++... ++.+.+|. ..+.
T Consensus 297 ~~l~gkrv~i~g-------~~~~~~~l~~~L~~elG~~vv~~~~~~~~~-~~---~~~~~~~~~~~~~~i~~D~--~e~~ 363 (430)
T cd01981 297 QNLTGKRAFVFG-------DATHVAAATRILAREMGFRVVGAGTYCKED-AK---WFREQATGYCDEALITDDH--TEVG 363 (430)
T ss_pred ccccCCeEEEEc-------ChHHHHHHHHHHHHHcCCEEEeccCCCccH-HH---HHHHHHHhcCCceEEecCH--HHHH
Confidence 467799987754 4668889999886 8999999877554421 11 123333222 22222332 2222
Q ss_pred ---HhhccCEEEEech
Q 023401 147 ---TALKADLIVLNTA 159 (282)
Q Consensus 147 ---~a~~~DLVIaNT~ 159 (282)
...++|+||.||-
T Consensus 364 ~~i~~~~pdliig~~~ 379 (430)
T cd01981 364 DMIARTEPELIFGTQM 379 (430)
T ss_pred HHHHhhCCCEEEecch
Confidence 2456999999994
No 144
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=60.08 E-value=40 Score=32.61 Aligned_cols=59 Identities=20% Similarity=0.360 Sum_probs=43.9
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
.|++++| |+...-+|+|..|.+.|.+|.++...+.. ...++...+++.+.++||++...
T Consensus 158 ~~~v~Vi-------GgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~ 219 (441)
T PRK08010 158 PGHLGIL-------GGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILN 219 (441)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeC
Confidence 4566665 56678899999999999999998743221 24456667788888889988754
No 145
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=59.80 E-value=12 Score=36.32 Aligned_cols=185 Identities=26% Similarity=0.306 Sum_probs=95.6
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC-----CchhhhhhhHHHHHHcCC-ceeeh-----hc
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS-----EEDEVIYSLEHKMWDRGV-QVISA-----KG 141 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~-----~~~~v~~~L~~kll~rgI-~v~~~-----k~ 141 (282)
.||++|+||=|---+.++++-+++...-++-+-++..+... .. +++++...+...+...++ ....+ .|
T Consensus 29 ~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD-~~~~l~ey~~~v~~~~~~~~~~~~l~~~~~~e~~~~PG 107 (322)
T COG0003 29 SGKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELD-PEKALEEYWDEVKDYLARLLRTRGLGGIYADELATLPG 107 (322)
T ss_pred cCCcEEEEEeCCCCchHhhhccccCCchhhcCCCCceeeec-HHHHHHHHHHHHHHHHHhhccccccchhHHHHHhhCCC
Confidence 35779999988888888888887776666655344333311 11 344554444444443332 11111 22
Q ss_pred hhH------HH---HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecc-----ccccccccccc-ccccccc
Q 023401 142 QET------IN---TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR-----GHYFKLDYVKH-LPLVAGA 206 (282)
Q Consensus 142 ~~~------i~---~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r-----~~Yf~l~~vkh-L~~v~~~ 206 (282)
..+ |. ...++|.||.-|+-.|+-++-|. +|.++-|..|.. +.+.. ..+ +....|.
T Consensus 108 idE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~-------lP~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 177 (322)
T COG0003 108 IDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLS-------LPEVLGWYLEKLFKPRRKRMVK---ALKSLSTAAGS 177 (322)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhc-------cHHHHHHHHHhhhhhHHHHHHH---hhhhcccccCC
Confidence 221 11 45669999999999999999663 456666666632 22221 111 1111122
Q ss_pred cccchhhHHH---HHHhhh-hhcCCCCC-CeeEEEecCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Q 023401 207 MIDSHVTAEY---WKNRTR-ERLRIKMP-DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFA 274 (282)
Q Consensus 207 ~~dS~Ata~~---w~~~~~-~~l~Ikl~-~~~vv~L~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~ 274 (282)
-.+..+.-+. +.+|.. .+.-.+-| .|.++...+.+.+.. ...+|. -...+++|++-+.+++-
T Consensus 178 ~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l----~e~~ra--~~~l~~~~i~v~~vi~n 244 (322)
T COG0003 178 PLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSL----YETKRA--VERLSLYGIPVDAVIVN 244 (322)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccch----HHHHHH--HHHHHHcCCchheeeee
Confidence 2222222222 223443 22333444 355555555555444 333322 12357888888888753
No 146
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=59.75 E-value=33 Score=34.80 Aligned_cols=77 Identities=10% Similarity=0.087 Sum_probs=46.9
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee--ehhchhHHH
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--SAKGQETIN 146 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~--~~k~~~~i~ 146 (282)
+|..||++.++ |.|-....+++.|. +.|.+|+......+. .-..+..++...+..+. +|. ..+.
T Consensus 291 ~~l~Gkrv~I~-------gd~~~a~~l~~~L~~ElG~~vv~~gt~~~~----~~~~~~~~~~~~~~~~~i~dD~--~ei~ 357 (511)
T TIGR01278 291 QSLTGKRAFVF-------GDATHAVGMTKILARELGIHIVGAGTYCKY----DADWVREQVAGYVDEVLITDDF--QEVA 357 (511)
T ss_pred HHhcCCeEEEE-------cCcHHHHHHHHHHHHhCCCEEEecCCchhh----hHHHHHHHHHhcCCCeEEeCCH--HHHH
Confidence 45789999765 34778999999997 899999766533221 11122333333333332 332 2222
Q ss_pred ---HhhccCEEEEech
Q 023401 147 ---TALKADLIVLNTA 159 (282)
Q Consensus 147 ---~a~~~DLVIaNT~ 159 (282)
...++|+||.|+-
T Consensus 358 ~~i~~~~pdliiG~~~ 373 (511)
T TIGR01278 358 DAIAALEPELVLGTQM 373 (511)
T ss_pred HHHHhcCCCEEEEChH
Confidence 2457999999993
No 147
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=59.09 E-value=24 Score=33.90 Aligned_cols=78 Identities=27% Similarity=0.342 Sum_probs=50.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc------hhHH
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------QETI 145 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~------~~~i 145 (282)
.+|.+|-.--|==--| ..|++-|+..|++|.|-.++-.+..|++...| .+.||+|+--++ ...+
T Consensus 41 l~G~rIa~cLHle~kT------A~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL----~~~Gi~V~A~~get~eey~~~i 110 (268)
T PF05221_consen 41 LKGARIAGCLHLEAKT------AVLAETLKALGAEVRWTGSNPLSTQDDVAAAL----AEEGIPVFAWKGETDEEYWWCI 110 (268)
T ss_dssp TTTEEEEEES--SHHH------HHHHHHHHHTTEEEEEEESSTTT--HHHHHHH----HHTTEEEEE-TT--HHHHHHHH
T ss_pred CCCCEEEEEEechHHH------HHHHHHHHHcCCeEEEecCCCcccchHHHHHh----ccCCceEEEeCCCCHHHHHHHH
Confidence 4688888877732222 24788999999999999988778888885444 478999996543 3334
Q ss_pred HHhh------ccCEEEEech
Q 023401 146 NTAL------KADLIVLNTA 159 (282)
Q Consensus 146 ~~a~------~~DLVIaNT~ 159 (282)
..+. ..|+||=+-.
T Consensus 111 ~~~L~~~~~~~P~~iiDDG~ 130 (268)
T PF05221_consen 111 EKALSWEDDHGPNLIIDDGG 130 (268)
T ss_dssp HHCHSESTTCE-SEEEESSS
T ss_pred HHHhcCCCCCCcceeecchH
Confidence 3333 4788887654
No 148
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=58.86 E-value=49 Score=31.13 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=35.4
Q ss_pred EEEEEeccCC--CCCchHHHHHH--HHHHHhCCCeEEEEeccCC
Q 023401 76 LVLLVSHELS--LSGGPLLLMEL--AFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 76 kILLISHELs--~TGAPLlLleL--A~~Lkq~G~~V~vL~~~~G 115 (282)
.+|+|.=|+. .-|-+...-|+ ...|++.|.+|.++.++..
T Consensus 32 D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~~~~~v~avpGNcD 75 (226)
T COG2129 32 DLLVIAGDLTYFHFGPKEVAEELNKLEALKELGIPVLAVPGNCD 75 (226)
T ss_pred CEEEEecceehhhcCchHHHHhhhHHHHHHhcCCeEEEEcCCCC
Confidence 4899999999 88999999998 8999999999999996644
No 149
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=58.86 E-value=18 Score=31.00 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=29.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~ 108 (282)
.+||+||+| .|.-.||+ -|.+.+..|++.|.+++
T Consensus 107 ~~gk~VLIV-DDIitTG~--Tl~~a~~~L~~~Ga~~v 140 (169)
T TIGR01090 107 KPGQRVLIV-DDLLATGG--TAEATDELIRKLGGEVV 140 (169)
T ss_pred CCcCEEEEE-eccccchH--HHHHHHHHHHHcCCEEE
Confidence 399999998 88999999 78899999999998843
No 150
>PRK06116 glutathione reductase; Validated
Probab=58.75 E-value=40 Score=32.72 Aligned_cols=59 Identities=20% Similarity=0.355 Sum_probs=44.4
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
+|+|++| |+-..-+|+|..|.+.|.+|.++...... .+.++...+.+.+.++||.+...
T Consensus 167 ~~~vvVi-------GgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~ 228 (450)
T PRK06116 167 PKRVAVV-------GAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTN 228 (450)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECC
Confidence 4778777 44457889999999999999999843321 34566677888888899988754
No 151
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=58.52 E-value=26 Score=34.67 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=30.5
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
++||+|++. .+.+.|-+-..++++.|++.|++|.++..+..
T Consensus 1 l~~k~Illg---iTGSiaa~~~~~ll~~L~~~g~~V~vv~T~~A 41 (390)
T TIGR00521 1 LENKKILLG---VTGGIAAYKTVELVRELVRQGAEVKVIMTEAA 41 (390)
T ss_pred CCCCEEEEE---EeCHHHHHHHHHHHHHHHhCCCEEEEEECHhH
Confidence 368888775 23443346678899999999999999996655
No 152
>PRK09739 hypothetical protein; Provisional
Probab=58.45 E-value=74 Score=27.68 Aligned_cols=97 Identities=13% Similarity=0.057 Sum_probs=51.2
Q ss_pred ccccEEEEEeccCCCCCch-HHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhc
Q 023401 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAP-LlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~ 150 (282)
|+.++||+|+--....|.- .++=.+++.+++.|++|.++-..+-+..+.....-..... .+.....+...+.++...+
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 79 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWK-NPDKRYSPEVHQLYSELLE 79 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhc-ccCCCCCHHHHHHHHHHHh
Confidence 4556777774334434433 3455566889999999988864432211111000000111 1112223334445567888
Q ss_pred cCEEEEechhc--------hHHHHHHh
Q 023401 151 ADLIVLNTAVA--------GKWLDAVL 169 (282)
Q Consensus 151 ~DLVIaNT~v~--------g~wl~~l~ 169 (282)
+|.||.-|=+= =.|+|.+.
T Consensus 80 AD~iV~~~P~y~~~~Pa~LK~~iD~v~ 106 (199)
T PRK09739 80 HDALVFVFPLWWYSFPAMLKGYIDRVW 106 (199)
T ss_pred CCEEEEECchhhhcchHHHHHHHHHHc
Confidence 99999987542 34666664
No 153
>PRK04155 chaperone protein HchA; Provisional
Probab=58.11 E-value=96 Score=29.57 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=34.1
Q ss_pred ccccccccEEEEEeccC---CC-------CCc-hHHHHHHHHHHHhCCCeEEEEeccCCC
Q 023401 68 PLSFMKSKLVLLVSHEL---SL-------SGG-PLLLMELAFLLRGVGTKVNWITIQKPS 116 (282)
Q Consensus 68 ~~~f~~~KkILLISHEL---s~-------TGA-PLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (282)
|-.|--|||||+|.=+. .+ ||- |.=++.-...|++.|++|.+.+..+++
T Consensus 43 ~~~~~~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~~ 102 (287)
T PRK04155 43 PKPYRGGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGNP 102 (287)
T ss_pred CCcCCCCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCCc
Confidence 34466688999886533 22 332 556666678999999999999966543
No 154
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=57.97 E-value=20 Score=27.95 Aligned_cols=42 Identities=33% Similarity=0.366 Sum_probs=33.1
Q ss_pred CccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 67 SPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 67 ~~~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
.+....+||+||+| .|.=.||. -|.+.++.|++.|.+++-++
T Consensus 81 ~~~~~~~gk~vliV-DDvi~tG~--Tl~~~~~~L~~~g~~~v~~~ 122 (125)
T PF00156_consen 81 IDKEDIKGKRVLIV-DDVIDTGG--TLKEAIELLKEAGAKVVGVA 122 (125)
T ss_dssp EESSSGTTSEEEEE-EEEESSSH--HHHHHHHHHHHTTBSEEEEE
T ss_pred cccccccceeEEEE-eeeEcccH--HHHHHHHHHHhCCCcEEEEE
Confidence 45677899988887 56666777 78899999999999876543
No 155
>COG1647 Esterase/lipase [General function prediction only]
Probab=57.74 E-value=72 Score=30.40 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=68.9
Q ss_pred CCCccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhH
Q 023401 65 KSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQET 144 (282)
Q Consensus 65 ~~~~~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~ 144 (282)
+|.|.-|=.|++-+|.=| +-||.|-=+=.|+++|.+.|++|+.=.-.|-+ .+-+.|++-|..---......
T Consensus 5 ~p~pf~f~~G~~AVLllH--GFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG-------~~~e~fl~t~~~DW~~~v~d~ 75 (243)
T COG1647 5 PPKPFTFEGGNRAVLLLH--GFTGTPRDVRMLGRYLNENGYTVYAPRYPGHG-------TLPEDFLKTTPRDWWEDVEDG 75 (243)
T ss_pred CCCCeeeccCCEEEEEEe--ccCCCcHHHHHHHHHHHHCCceEecCCCCCCC-------CCHHHHhcCCHHHHHHHHHHH
Confidence 467888999999999999 56899999999999999999999876533221 234566655542221111112
Q ss_pred HHHh--hccCEEEEechhchHHHHHHhhccCC
Q 023401 145 INTA--LKADLIVLNTAVAGKWLDAVLKEDVP 174 (282)
Q Consensus 145 i~~a--~~~DLVIaNT~v~g~wl~~l~~~~~~ 174 (282)
-+.+ ..+|=|.+.-+..|=.+...+.+++|
T Consensus 76 Y~~L~~~gy~eI~v~GlSmGGv~alkla~~~p 107 (243)
T COG1647 76 YRDLKEAGYDEIAVVGLSMGGVFALKLAYHYP 107 (243)
T ss_pred HHHHHHcCCCeEEEEeecchhHHHHHHHhhCC
Confidence 2222 44888888888778777766666664
No 156
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=57.32 E-value=48 Score=33.20 Aligned_cols=74 Identities=20% Similarity=0.220 Sum_probs=46.6
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH-Hh
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-TA 148 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~-~a 148 (282)
.+..||+|.+. |.|-....+++.|.+.|.++..+...... +. .+++. .+.-++.|.. .+. .+
T Consensus 307 ~~l~gkrvai~-------~~~~~~~~la~~L~elG~~v~~~~~~~~~--~~-----~~~~~-~~~i~~~D~~--~le~~~ 369 (455)
T PRK14476 307 FYFGGKRVAIA-------AEPDLLLALGSFLAEMGAEIVAAVTTTKS--PA-----LEDLP-AEEVLIGDLE--DLEELA 369 (455)
T ss_pred HHhcCCEEEEE-------eCHHHHHHHHHHHHHCCCEEEEEEeCCCc--HH-----HHhCC-cCcEEeCCHH--HHHHhc
Confidence 35679998766 35568889999999999999888854432 11 12221 1111223322 232 23
Q ss_pred hccCEEEEechh
Q 023401 149 LKADLIVLNTAV 160 (282)
Q Consensus 149 ~~~DLVIaNT~v 160 (282)
.++|++|.|+-.
T Consensus 370 ~~~dliig~s~~ 381 (455)
T PRK14476 370 EGADLLITNSHG 381 (455)
T ss_pred cCCCEEEECchh
Confidence 489999999974
No 157
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=57.23 E-value=46 Score=32.28 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=44.0
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
+|+|++| |+-..-+|+|..|.+.|.+|.++...... .+.++...+.+.+.++|++++..
T Consensus 175 ~~~v~Ii-------GgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~ 236 (461)
T PRK05249 175 PRSLIIY-------GAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHN 236 (461)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEEC
Confidence 4667776 34456789999999999999998744321 34566677888888899998754
No 158
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=57.17 E-value=44 Score=32.76 Aligned_cols=59 Identities=25% Similarity=0.459 Sum_probs=43.1
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC---CCCchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK---PSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~---G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
.|+|++| |+-..-+|+|..|++.|.+|.++.... +....++...+++.+.++||.+...
T Consensus 180 ~~~vvII-------GgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~ 241 (472)
T PRK05976 180 PKSLVIV-------GGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTG 241 (472)
T ss_pred CCEEEEE-------CCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeC
Confidence 4667776 444578999999999999999886332 1234556667788888889988754
No 159
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=57.15 E-value=1.6e+02 Score=26.95 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=15.8
Q ss_pred hhccCEEEEechhch-HHHHHHhhccC
Q 023401 148 ALKADLIVLNTAVAG-KWLDAVLKEDV 173 (282)
Q Consensus 148 a~~~DLVIaNT~v~g-~wl~~l~~~~~ 173 (282)
..+.|-||..+...- ..+..+.+.++
T Consensus 54 ~~~vDGiI~~s~~~~~~~l~~~~~~~i 80 (279)
T PF00532_consen 54 QRRVDGIILASSENDDEELRRLIKSGI 80 (279)
T ss_dssp HTTSSEEEEESSSCTCHHHHHHHHTTS
T ss_pred hcCCCEEEEecccCChHHHHHHHHcCC
Confidence 455777776665554 56666665555
No 160
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=57.08 E-value=46 Score=32.18 Aligned_cols=59 Identities=22% Similarity=0.292 Sum_probs=42.3
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
+|+|++| |+-..-+|+|..|++.|.+|.++..... ..+.++...+.+.+.++||.+...
T Consensus 157 ~~~vvII-------GgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~ 218 (438)
T PRK07251 157 PERLGII-------GGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLN 218 (438)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcC
Confidence 5677776 5556788999999999999998875432 133455555667777889987754
No 161
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=56.95 E-value=25 Score=31.09 Aligned_cols=62 Identities=19% Similarity=0.166 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH-cCCceeehhch-------hHHHHhhccCEEEE
Q 023401 90 PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD-RGVQVISAKGQ-------ETINTALKADLIVL 156 (282)
Q Consensus 90 PLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~-rgI~v~~~k~~-------~~i~~a~~~DLVIa 156 (282)
-+-..++.+.|++.|.+|.++..+... .++.+.. +.. .|-++..+... .-|..+..+|++++
T Consensus 14 a~~~~~li~~L~~~g~~V~vv~T~~A~---~fi~~~~--l~~l~~~~v~~~~~~~~~~~~~~hi~l~~~aD~~vI 83 (182)
T PRK07313 14 AYKAADLTSQLTKRGYQVTVLMTKAAT---KFITPLT--LQVLSKNPVHLDVMDEHDPKLMNHIELAKRADLFLV 83 (182)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEChhHH---HHcCHHH--HHHHhCCceEeccccccccCCccccccccccCEEEE
Confidence 344679999999999999998866442 2322211 222 25566665322 12335678998885
No 162
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=56.71 E-value=34 Score=26.58 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh-----hc-h-h----HHH--HhhccCEEEEech
Q 023401 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-----KG-Q-E----TIN--TALKADLIVLNTA 159 (282)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~-----k~-~-~----~i~--~a~~~DLVIaNT~ 159 (282)
++++|+.|.+.|+++..-. | ..+-|.+.||++..- .+ . . -.+ ...++|+||.|.-
T Consensus 2 ~~~~a~~l~~lG~~i~AT~---g---------Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 2 IVPLAKRLAELGFEIYATE---G---------TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHHHHHHTTSEEEEEH---H---------HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred HHHHHHHHHHCCCEEEECh---H---------HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 5789999999998877655 3 355666789983311 11 1 1 112 3677998887654
No 163
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=56.54 E-value=27 Score=34.57 Aligned_cols=59 Identities=25% Similarity=0.191 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHH-H-----HhhccCEEEEechhch
Q 023401 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETI-N-----TALKADLIVLNTAVAG 162 (282)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i-~-----~a~~~DLVIaNT~v~g 162 (282)
.=..+|+.|...|++|.++.+..... .-.++.+++-.....+ + ...++|.+|.|.+++-
T Consensus 213 ~g~~~a~~~~~~Ga~V~~~~g~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd 277 (390)
T TIGR00521 213 MGLALAEAAYKRGADVTLITGPVSLL------------TPPGVKSIKVSTAEEMLEAALNELAKDFDIFISAAAVAD 277 (390)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCccC------------CCCCcEEEEeccHHHHHHHHHHhhcccCCEEEEcccccc
Confidence 34578999999999999988543310 0112223322222211 1 2356899999999853
No 164
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=56.47 E-value=31 Score=32.88 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=32.4
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
-++||++++| .|.=.||+ -|.+.|+.||+.|+.-+.+..-+|
T Consensus 208 ~v~Gr~vIIV-DDIidTG~--Tl~~aa~~Lk~~GA~~V~~~~tHg 249 (301)
T PRK07199 208 PWAGRTPVLV-DDIVSTGR--TLIEAARQLRAAGAASPDCVVVHA 249 (301)
T ss_pred ccCCCEEEEE-ecccCcHH--HHHHHHHHHHHCCCcEEEEEEEee
Confidence 4689988666 67777888 477999999999997665555556
No 165
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=56.44 E-value=39 Score=34.63 Aligned_cols=78 Identities=22% Similarity=0.228 Sum_probs=48.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch-------hH
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-------ET 144 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~-------~~ 144 (282)
..||+|+|.- +.+=|-+-..+|++.|++.|++|.++..+... .++.++.-+-+ .|-+|+.+... ..
T Consensus 68 l~~k~IllgV---tGsIAayka~~lvr~L~k~G~~V~VvmT~sA~---~fv~p~~~~~l-s~~~V~~d~~~~~~~~~~~H 140 (475)
T PRK13982 68 LASKRVTLII---GGGIAAYKALDLIRRLKERGAHVRCVLTKAAQ---QFVTPLTASAL-SGQRVYTDLFDPESEFDAGH 140 (475)
T ss_pred cCCCEEEEEE---ccHHHHHHHHHHHHHHHhCcCEEEEEECcCHH---HHhhHHHHHHh-cCCceEecCCCcccccCccc
Confidence 5788888752 22223345678899999999999999866442 33333321111 25667755221 23
Q ss_pred HHHhhccCEEEE
Q 023401 145 INTALKADLIVL 156 (282)
Q Consensus 145 i~~a~~~DLVIa 156 (282)
++.+..+|++++
T Consensus 141 i~la~~aD~~vV 152 (475)
T PRK13982 141 IRLARDCDLIVV 152 (475)
T ss_pred hhhhhhcCEEEE
Confidence 566788999985
No 166
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=56.39 E-value=45 Score=29.73 Aligned_cols=58 Identities=14% Similarity=0.401 Sum_probs=39.4
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe--ccCCCCchhhhhhhHHHHHHcCCceee
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT--IQKPSEEDEVIYSLEHKMWDRGVQVIS 138 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~--~~~G~~~~~v~~~L~~kll~rgI~v~~ 138 (282)
+.+|++|++|= |.=.||+ -+.+..+.+++.|.+|+-+. ..++. +-.+++.++|+++..
T Consensus 119 ~~~g~rVlIVD-DVitTGg--S~~~~i~~l~~~Ga~V~~v~vlvdr~~-------g~~~~l~~~gi~~~s 178 (187)
T PRK13810 119 LKPEDRIVMLE-DVTTSGG--SVREAIEVVREAGAYIKYVITVVDREE-------GAEENLKEADVELVP 178 (187)
T ss_pred CCCcCEEEEEE-eccCCCh--HHHHHHHHHHHCCCEEEEEEEEEECCc-------ChHHHHHHcCCcEEE
Confidence 45799998885 5555666 57788899999999854333 22232 125677778998874
No 167
>PRK06370 mercuric reductase; Validated
Probab=56.35 E-value=47 Score=32.40 Aligned_cols=59 Identities=20% Similarity=0.369 Sum_probs=43.2
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
+|+|++| |+=..-+|+|..|++.|.+|.++...... .+.++...+.+.+.++|+++...
T Consensus 171 ~~~vvVI-------GgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~ 232 (463)
T PRK06370 171 PEHLVII-------GGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLN 232 (463)
T ss_pred CCEEEEE-------CCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeC
Confidence 4777777 33346789999999999999999844321 23455566788888889988854
No 168
>PRK10867 signal recognition particle protein; Provisional
Probab=55.95 E-value=93 Score=31.46 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=53.3
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhC-CCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh---ch-----hHHH
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---GQ-----ETIN 146 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~-G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k---~~-----~~i~ 146 (282)
.|++++ ...+|=--....||.+|++. |..|.++.+..- -...+.-|.....+.|++++... .. +.+.
T Consensus 102 vI~~vG--~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~--R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 102 VIMMVG--LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY--RPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred EEEEEC--CCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc--chHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 344444 88899999999999999998 999999884311 11122233333445689988542 11 1222
Q ss_pred H--hhccCEEEEechhc
Q 023401 147 T--ALKADLIVLNTAVA 161 (282)
Q Consensus 147 ~--a~~~DLVIaNT~v~ 161 (282)
. ..++|+||+.|+--
T Consensus 178 ~a~~~~~DvVIIDTaGr 194 (433)
T PRK10867 178 EAKENGYDVVIVDTAGR 194 (433)
T ss_pred HHHhcCCCEEEEeCCCC
Confidence 2 24599999999963
No 169
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=55.77 E-value=28 Score=27.50 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee
Q 023401 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS 138 (282)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~ 138 (282)
=++-||+.|++.|++|.+.+.. .+++...+.|++...
T Consensus 14 P~lala~~L~~rGh~V~~~~~~----------~~~~~v~~~Gl~~~~ 50 (139)
T PF03033_consen 14 PFLALARALRRRGHEVRLATPP----------DFRERVEAAGLEFVP 50 (139)
T ss_dssp HHHHHHHHHHHTT-EEEEEETG----------GGHHHHHHTT-EEEE
T ss_pred HHHHHHHHHhccCCeEEEeecc----------cceecccccCceEEE
Confidence 3568999999999999988832 346677777777664
No 170
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=55.70 E-value=52 Score=32.15 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=44.3
Q ss_pred HH-HHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccCEEEEechhc--hHHHHHHhh
Q 023401 94 ME-LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVA--GKWLDAVLK 170 (282)
Q Consensus 94 le-LA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~DLVIaNT~v~--g~wl~~l~~ 170 (282)
|. +|++|++.|++|.+ ...+. . + ..+++.+.|+++... +... ...++|+||....+. .+.+.+..+
T Consensus 12 m~~la~~L~~~G~~v~~-~D~~~--~-~----~~~~l~~~gi~~~~g-~~~~--~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 12 MSGIAEILLNRGYQVSG-SDIAE--N-A----TTKRLEALGIPIYIG-HSAE--NLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred HHHHHHHHHHCCCeEEE-ECCCc--c-h----HHHHHHHCcCEEeCC-CCHH--HCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 55 99999999999864 21111 1 1 235566779988764 2221 235699999998886 345666554
Q ss_pred ccC
Q 023401 171 EDV 173 (282)
Q Consensus 171 ~~~ 173 (282)
.+.
T Consensus 81 ~~i 83 (448)
T TIGR01082 81 RGI 83 (448)
T ss_pred cCC
Confidence 444
No 171
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=55.69 E-value=19 Score=31.44 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=29.5
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEE
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNW 109 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~v 109 (282)
.++||+|||| .|--+||| -|-+.++.|++.|+..+-
T Consensus 149 ~~~~~~vllv-DDV~TTGa--Tl~~~~~~L~~~Ga~~V~ 184 (190)
T TIGR00201 149 SFQGRNIVLV-DDVVTTGA--TLHEIARLLLELGAASVQ 184 (190)
T ss_pred CCCCCEEEEE-eeeeccHH--HHHHHHHHHHHcCCCEEE
Confidence 3678887765 88999999 789999999999977443
No 172
>PRK12827 short chain dehydrogenase; Provisional
Probab=55.53 E-value=1.2e+02 Score=25.84 Aligned_cols=83 Identities=20% Similarity=0.249 Sum_probs=45.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--ee-h-hchhHH--
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--IS-A-KGQETI-- 145 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~~-~-k~~~~i-- 145 (282)
+++|+||++.. +|+ +=.++|+.|.+.|++|+++...... ..+-...+.+++...+..+ +. | ....++
T Consensus 4 ~~~~~ilItGa----sg~--iG~~la~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 76 (249)
T PRK12827 4 LDSRRVLITGG----SGG--LGRAIAVRLAADGADVIVLDIHPMR-GRAEADAVAAGIEAAGGKALGLAFDVRDFAATRA 76 (249)
T ss_pred cCCCEEEEECC----CCh--HHHHHHHHHHHCCCeEEEEcCcccc-cHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 56788877642 222 4568999999999998876632221 1122223344554443332 21 1 112222
Q ss_pred --H----HhhccCEEEEechhc
Q 023401 146 --N----TALKADLIVLNTAVA 161 (282)
Q Consensus 146 --~----~a~~~DLVIaNT~v~ 161 (282)
+ ...++|.||.|....
T Consensus 77 ~~~~~~~~~~~~d~vi~~ag~~ 98 (249)
T PRK12827 77 ALDAGVEEFGRLDILVNNAGIA 98 (249)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 2 124689999998654
No 173
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=55.48 E-value=2e+02 Score=28.00 Aligned_cols=83 Identities=20% Similarity=0.216 Sum_probs=51.6
Q ss_pred EEEEecc-CCCCCchHHHHHHHHHHHhCCCeEEEEe-ccCCCC-c---------hhhhhhhHHHHHHc--CCceeehh-c
Q 023401 77 VLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSE-E---------DEVIYSLEHKMWDR--GVQVISAK-G 141 (282)
Q Consensus 77 ILLISHE-Ls~TGAPLlLleLA~~Lkq~G~~V~vL~-~~~G~~-~---------~~v~~~L~~kll~r--gI~v~~~k-~ 141 (282)
|+-|+.- .+.||-==+...|+++|++.|..|.+++ +.||.. . +.-..+=|..++.+ +++|+-.+ .
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR 130 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGGKLEKGPLLVDPDHTAAEVGDEPLLIARRTGAPVAVSPDR 130 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCCCcCCCCEEeCCCCChhhhCcHHHHhccCCCceEEEcCcH
Confidence 5555544 4677877788899999999999999999 554421 0 01112445667766 77877442 2
Q ss_pred hhHHHHhh---ccCEEEEech
Q 023401 142 QETINTAL---KADLIVLNTA 159 (282)
Q Consensus 142 ~~~i~~a~---~~DLVIaNT~ 159 (282)
.+....+. .+|+||..=.
T Consensus 131 ~~~~~~~~~~~~~dviilDDG 151 (325)
T PRK00652 131 VAAARALLAAHGADIIILDDG 151 (325)
T ss_pred HHHHHHHHhcCCCCEEEEcCC
Confidence 23333222 5788877543
No 174
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=55.33 E-value=48 Score=32.62 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=42.1
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
|++++| |+-..-+|+|..|.+.|.+|.++..... ..+.++...+++.|.++||++...
T Consensus 178 ~~vvVI-------GgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~ 238 (466)
T PRK07845 178 EHLIVV-------GSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKR 238 (466)
T ss_pred CeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcC
Confidence 556666 3334677999999999999999984332 134556667788888899988754
No 175
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=55.23 E-value=47 Score=33.24 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=47.7
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHc---CCceeehhchhHH
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDR---GVQVISAKGQETI 145 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~~~v~~~L~~kll~r---gI~v~~~k~~~~i 145 (282)
...+||++.+. +|++ ....+++.|. +.|.+|+.+....+. .++ + +++++. +.-++.+....++
T Consensus 321 ~~L~GkrvaI~------~~~~-~~~~l~~~l~~ElGmevv~~~~~~~~-~~~----~-~~~~~~~~~~~~~i~d~~~~e~ 387 (457)
T TIGR01284 321 ERLRGKKVWVW------SGGP-KLWHWPRPLEDELGMEVVAVSTKFGH-EDD----Y-EKIIARVREGTVIIDDPNELEL 387 (457)
T ss_pred HHcCCCEEEEE------CCCc-HHHHHHHHHHHhCCCEEEEEEEEeCC-HHH----H-HHHHHhcCCCeEEEeCCCHHHH
Confidence 55789999763 2333 5588898886 799999987654432 111 1 223332 3334455444333
Q ss_pred H---HhhccCEEEEechh
Q 023401 146 N---TALKADLIVLNTAV 160 (282)
Q Consensus 146 ~---~a~~~DLVIaNT~v 160 (282)
. ...++|++|.|+--
T Consensus 388 ~~~i~~~~pDllig~~~~ 405 (457)
T TIGR01284 388 EEIIEKYKPDIILTGIRE 405 (457)
T ss_pred HHHHHhcCCCEEEecCCc
Confidence 2 35679999999863
No 176
>PRK10262 thioredoxin reductase; Provisional
Probab=55.20 E-value=36 Score=31.20 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=42.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC-CCchhhhhhhHHHHHHcCCceeeh
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP-SEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G-~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
.++|+|++| |+-..-+|+|..|.+.|.+|.++..... +.+......+.+.+.++||++...
T Consensus 144 ~~g~~vvVv-------GgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~ 205 (321)
T PRK10262 144 YRNQKVAVI-------GGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTN 205 (321)
T ss_pred cCCCEEEEE-------CCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHHHHhhccCCCeEEEeC
Confidence 467888887 4446789999999999999999985432 122334445566666778887764
No 177
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=54.65 E-value=80 Score=30.32 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=52.4
Q ss_pred ccEEEEEeccCC--CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHH-HcCCceeeh-hchhHHHHhh
Q 023401 74 SKLVLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW-DRGVQVISA-KGQETINTAL 149 (282)
Q Consensus 74 ~KkILLISHELs--~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll-~rgI~v~~~-k~~~~i~~a~ 149 (282)
++-+|++.|--. ....+--+-++.+.|++.|.++.++.-.+++.+..+...+.+... ..++.++.. .+.+-+....
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~ 280 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLK 280 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHH
Confidence 366778899765 445556688999999888866666553433333334333333221 124555544 3444455788
Q ss_pred ccCEEEEech
Q 023401 150 KADLIVLNTA 159 (282)
Q Consensus 150 ~~DLVIaNT~ 159 (282)
.+|+||.|+-
T Consensus 281 ~a~~vitdSS 290 (365)
T TIGR03568 281 NADAVIGNSS 290 (365)
T ss_pred hCCEEEEcCh
Confidence 8999999984
No 178
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=54.56 E-value=28 Score=30.40 Aligned_cols=87 Identities=18% Similarity=0.173 Sum_probs=44.7
Q ss_pred cccEEEEEeccCCCCCc--hH-HHHHHHHHHHhCCCeEEEEeccCCCCc--hhhhhhhHHHHHHc----CCceeehhchh
Q 023401 73 KSKLVLLVSHELSLSGG--PL-LLMELAFLLRGVGTKVNWITIQKPSEE--DEVIYSLEHKMWDR----GVQVISAKGQE 143 (282)
Q Consensus 73 ~~KkILLISHELs~TGA--PL-lLleLA~~Lkq~G~~V~vL~~~~G~~~--~~v~~~L~~kll~r----gI~v~~~k~~~ 143 (282)
.++.+++|.+-.+...- |. -..+|++.|.+.|..|+++. |+.+ .+. .+++.+. .+.........
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~ 175 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLG---GPEEQEKEI----ADQIAAGLQNPVINLAGKTSLR 175 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE-----SSHHHHHHH----HHHHHTTHTTTTEEETTTS-HH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEc---cchHHHHHH----HHHHHHhcccceEeecCCCCHH
Confidence 47788888887766422 22 34799999999996665555 3211 122 2233322 12222222233
Q ss_pred HH-HHhhccCEEEEechhchHHHH
Q 023401 144 TI-NTALKADLIVLNTAVAGKWLD 166 (282)
Q Consensus 144 ~i-~~a~~~DLVIaNT~v~g~wl~ 166 (282)
++ .....+|++|.|=-...+.=.
T Consensus 176 e~~ali~~a~~~I~~Dtg~~HlA~ 199 (247)
T PF01075_consen 176 ELAALISRADLVIGNDTGPMHLAA 199 (247)
T ss_dssp HHHHHHHTSSEEEEESSHHHHHHH
T ss_pred HHHHHHhcCCEEEecCChHHHHHH
Confidence 32 257889999999765444333
No 179
>PRK12829 short chain dehydrogenase; Provisional
Probab=54.56 E-value=67 Score=27.74 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=26.8
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
+.+++|++|++.- +|+ +=..+++.|.+.|++|.++..
T Consensus 7 ~~~~~~~vlItGa----~g~--iG~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 7 KPLDGLRVLVTGG----ASG--IGRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred hccCCCEEEEeCC----CCc--HHHHHHHHHHHCCCEEEEEeC
Confidence 4478888887743 233 557889999999999766663
No 180
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=54.50 E-value=41 Score=26.46 Aligned_cols=40 Identities=28% Similarity=0.218 Sum_probs=32.2
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (282)
++.-++++ |.+|..--+.++++.+|+.|.+|..+++.++.
T Consensus 47 ~~d~vi~i----S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 47 PGDVVIAI----SNSGETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CCCEEEEE----eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 44455666 56788889999999999999999999976553
No 181
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=54.41 E-value=60 Score=32.05 Aligned_cols=76 Identities=22% Similarity=0.205 Sum_probs=47.4
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHh
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a 148 (282)
..+..||++.+.. .|-....+++.|.+.|.++.++....+.+ + .+++. .+.-.+.|...-+ +.+
T Consensus 295 ~~~l~gkrvai~~-------~~~~~~~l~~~L~ElG~~~~~~~~~~~~~--~-----~~~~~-~~~~~~~D~~~~e-~~~ 358 (417)
T cd01966 295 HFYLGGKRVAIAL-------EPDLLAALSSFLAEMGAEIVAAVATTDSP--A-----LEKLP-AEEVVVGDLEDLE-DLA 358 (417)
T ss_pred HHHhCCcEEEEEe-------CHHHHHHHHHHHHHCCCEEEEEEECCCCH--H-----HHhCc-ccceEeCCHHHHH-Hhc
Confidence 3466799998775 45577889999999999998887554431 1 12221 1222223322111 245
Q ss_pred hccCEEEEechh
Q 023401 149 LKADLIVLNTAV 160 (282)
Q Consensus 149 ~~~DLVIaNT~v 160 (282)
.++|++|.|+-.
T Consensus 359 ~~~dllig~s~~ 370 (417)
T cd01966 359 AEADLLVTNSHG 370 (417)
T ss_pred ccCCEEEEcchh
Confidence 569999999873
No 182
>PLN02507 glutathione reductase
Probab=54.34 E-value=51 Score=33.04 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=44.6
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
.|+|++|. +-..-+|+|..|.+.|.+|.++...... .+.++...+++.|.++||.+...
T Consensus 203 ~k~vvVIG-------gG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~ 264 (499)
T PLN02507 203 PKRAVVLG-------GGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPR 264 (499)
T ss_pred CCeEEEEC-------CcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeC
Confidence 57787773 3356789999999999999999854322 35666667788888899998755
No 183
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=54.15 E-value=79 Score=30.81 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=48.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee--ehhchhHHHHhh
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--SAKGQETINTAL 149 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~--~~k~~~~i~~a~ 149 (282)
.+|++|.+|.+ .++ +.-.++..+...|.+|.+.+-.+=...+++..-+++...+.|..+. ++ .-+...
T Consensus 152 l~glkv~~vGD-~~~-----v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d----~~eav~ 221 (338)
T PRK02255 152 LEDCKVVFVGD-ATQ-----VCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDD----VDEAVK 221 (338)
T ss_pred CCCCEEEEECC-Cch-----HHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcC----HHHHhC
Confidence 67899999996 344 5666677777889999998832211123443333344444564443 33 123567
Q ss_pred ccCEEEEech
Q 023401 150 KADLIVLNTA 159 (282)
Q Consensus 150 ~~DLVIaNT~ 159 (282)
.+|.|++-+-
T Consensus 222 ~aDvvy~~~w 231 (338)
T PRK02255 222 DADFVYTDVW 231 (338)
T ss_pred CCCEEEEccc
Confidence 8999999543
No 184
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=53.83 E-value=36 Score=24.48 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=27.4
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Q 023401 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275 (282)
Q Consensus 238 ~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~ 275 (282)
|.+++.-+ ++.+ .+-+.+.+.+|+|++|+-+.+
T Consensus 11 grt~eqk~----~l~~-~it~~l~~~lg~p~~~v~V~i 43 (64)
T PRK01964 11 GRPEEKIK----NLIR-EVTEAISATLDVPKERVRVIV 43 (64)
T ss_pred CCCHHHHH----HHHH-HHHHHHHHHhCcChhhEEEEE
Confidence 56777777 7777 688899999999999998765
No 185
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=53.60 E-value=43 Score=29.89 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=38.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe---ccCCCCchhhhhhhHHHHHHcCCceeeh
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT---IQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~---~~~G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
-+|++||+|= |.=.||+ -+..+.+++++.|.+|+-+. .+... +=.+++.+.|+|+..-
T Consensus 115 ~~G~rVLIVD-DvvtTGg--T~~a~~~ll~~aGa~Vvgv~~lvd~~~~-------~g~~~l~~~gvpv~sL 175 (191)
T TIGR01744 115 SDQDRVLIID-DFLANGQ--AAHGLVDIAKQAGAKIAGIGIVIEKSFQ-------NGRQELVELGYRVESL 175 (191)
T ss_pred CCcCEEEEEE-ehhccCh--HHHHHHHHHHHCCCEEEEEEEEEEecCc-------cHHHHHHhcCCcEEEE
Confidence 3899988885 6666777 57788899999999854333 23210 1145677778887643
No 186
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=53.51 E-value=1e+02 Score=29.67 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=43.8
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH---
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN--- 146 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~--- 146 (282)
....||++.+.. + .+ .+..+++.|++.|.+|+.+...... +..... ..+.++....++.+....++.
T Consensus 282 ~~l~gkrv~I~~-~-----~~-~~~~~~~~l~elG~~v~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 351 (406)
T cd01967 282 ERLKGKKVIIYT-G-----GA-RSWHVIAALRELGMEVVAAGYEFGH--DDDYER-IRKILDEGTLLVDDYNDLELEELV 351 (406)
T ss_pred HhccCCEEEEEc-c-----Cc-chHHHHHHHHHcCCEEEEEEEecCC--HHHHHH-HHhcCCCCcEEEeCCCHHHHHHHH
Confidence 356789887543 2 22 2344568999999998766533221 111001 112222233455554444443
Q ss_pred HhhccCEEEEechh
Q 023401 147 TALKADLIVLNTAV 160 (282)
Q Consensus 147 ~a~~~DLVIaNT~v 160 (282)
...++||+|.|+-.
T Consensus 352 ~~~~pdl~ig~~~~ 365 (406)
T cd01967 352 EKLKPDLILSGIKE 365 (406)
T ss_pred HhcCCCEEEeCCcc
Confidence 34569999999974
No 187
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=53.46 E-value=48 Score=32.58 Aligned_cols=65 Identities=23% Similarity=0.231 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchh-HHH--HhhccCEEEEech
Q 023401 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE-TIN--TALKADLIVLNTA 159 (282)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~-~i~--~a~~~DLVIaNT~ 159 (282)
++.+++.|.+.|.+|+.+...-.. +.......+.+.+.++.+......+ ... ...++|++|.|+-
T Consensus 292 ~~~la~~L~elGmevv~~~t~~~~--~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~pDl~Ig~s~ 359 (416)
T cd01980 292 ELLVARLLIESGAEVPYVSTSIPK--TSLSAPDYEWLSALGVEVRYRKSLEDDIAAVEEYRPDLAIGTTP 359 (416)
T ss_pred hHHHHHHHHHcCCEEEEEecCCCC--hhhhHHHHHHHHhcCCccccCCCHHHHHHHHhhcCCCEEEeCCh
Confidence 667999999999999988753211 1111233444544455443222211 122 2568999999966
No 188
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=53.39 E-value=73 Score=24.07 Aligned_cols=56 Identities=13% Similarity=-0.047 Sum_probs=35.8
Q ss_pred EEEEeccCCCC-CchHHHHHHHHHHHhCC--CeEEEEeccC-CCCchhhhhhhHHHHHHcCCce
Q 023401 77 VLLVSHELSLS-GGPLLLMELAFLLRGVG--TKVNWITIQK-PSEEDEVIYSLEHKMWDRGVQV 136 (282)
Q Consensus 77 ILLISHELs~T-GAPLlLleLA~~Lkq~G--~~V~vL~~~~-G~~~~~v~~~L~~kll~rgI~v 136 (282)
+||++|=.... .+.-.+.++++.|++.. .+|.+-.... .|.-. ...+++.+.|+..
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~----~~l~~l~~~g~~~ 61 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTE----EAIRELAEEGYQR 61 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH----HHHHHHHHcCCCe
Confidence 78999988877 77778999999998763 4555444333 33222 2245666666433
No 189
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=53.26 E-value=63 Score=24.91 Aligned_cols=59 Identities=27% Similarity=0.267 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh--hchhHHH--HhhccCEEEEec
Q 023401 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--KGQETIN--TALKADLIVLNT 158 (282)
Q Consensus 91 LlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~--k~~~~i~--~a~~~DLVIaNT 158 (282)
-+-.++++.|++.|.+|+++-.... ..+++.+.|++++.- .....++ -..++|.||+-|
T Consensus 8 ~~~~~i~~~L~~~~~~vvvid~d~~---------~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 8 RIGREIAEQLKEGGIDVVVIDRDPE---------RVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHH---------HHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred HHHHHHHHHHHhCCCEEEEEECCcH---------HHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc
Confidence 3667899999997778888883322 357888889988844 3333344 367899999887
No 190
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=53.24 E-value=1.4e+02 Score=30.22 Aligned_cols=76 Identities=22% Similarity=0.201 Sum_probs=49.1
Q ss_pred cCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc---h-----hHHHH--hhcc
Q 023401 83 ELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---Q-----ETINT--ALKA 151 (282)
Q Consensus 83 ELs~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~---~-----~~i~~--a~~~ 151 (282)
=.+.+|=--....||..|+ +.|..|.++.+.-- -.....-|+....+.|++++.... . +.++. ..++
T Consensus 106 G~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~--R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~ 183 (428)
T TIGR00959 106 GLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY--RPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGF 183 (428)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc--chHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCC
Confidence 5677899999999999987 57999988884421 111222233444445888875421 1 12222 3458
Q ss_pred CEEEEechh
Q 023401 152 DLIVLNTAV 160 (282)
Q Consensus 152 DLVIaNT~v 160 (282)
|+||+.|+-
T Consensus 184 DvVIIDTaG 192 (428)
T TIGR00959 184 DVVIVDTAG 192 (428)
T ss_pred CEEEEeCCC
Confidence 999999996
No 191
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=52.67 E-value=55 Score=31.10 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=46.4
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccCCC----CchhhhhhhHHHHHHcCCceeehhch---hHHH--HhhccCEEEEec
Q 023401 88 GGPLLLMELAFLLRGVGTKVNWITIQKPS----EEDEVIYSLEHKMWDRGVQVISAKGQ---ETIN--TALKADLIVLNT 158 (282)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~G~----~~~~v~~~L~~kll~rgI~v~~~k~~---~~i~--~a~~~DLVIaNT 158 (282)
|.|-+.....+.|.+.|++++.+..+.+. .......++.+...+.||+++..... +.+. ...++|++|+-.
T Consensus 7 Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~l~~~~~Dliv~~~ 86 (313)
T TIGR00460 7 GTPTFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLVRELKPDVIVVVS 86 (313)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHHHHhhCCCEEEEcc
Confidence 66767778888888889998877754221 11122346788888899999854221 2222 356899998753
No 192
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=52.62 E-value=53 Score=32.02 Aligned_cols=59 Identities=22% Similarity=0.407 Sum_probs=43.0
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
.|++++| |+=..-+|+|..|.+.|.+|.++...+.. .+.++...+++.+.++||.++..
T Consensus 166 ~~~vvII-------GgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~ 227 (463)
T TIGR02053 166 PESLAVI-------GGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTS 227 (463)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcC
Confidence 3667776 34456789999999999999999844221 24456667778888889988755
No 193
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=52.54 E-value=29 Score=27.23 Aligned_cols=34 Identities=32% Similarity=0.618 Sum_probs=22.4
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEe
Q 023401 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 276 (282)
Q Consensus 238 ~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~~ 276 (282)
|++.+.=+ ++=+ .+-+.+.+++||+++|+.|...
T Consensus 39 gRs~e~K~----~ly~-~l~~~L~~~~gi~p~Dv~I~l~ 72 (82)
T PF14552_consen 39 GRSTEQKK----ALYR-ALAERLAEKLGIRPEDVMIVLV 72 (82)
T ss_dssp ---HHHHH----HHHH-HHHHHHHHHH---GGGEEEEEE
T ss_pred CCCHHHHH----HHHH-HHHHHHHHHcCCCHHHEEEEEE
Confidence 67777666 6666 6888999999999999998764
No 194
>PTZ00058 glutathione reductase; Provisional
Probab=52.54 E-value=51 Score=34.07 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=44.8
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
+|++++| |+-..-+|+|..|...|.+|.++..... ..+.++...+++.+.++||.+...
T Consensus 237 pk~VvII-------GgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~ 298 (561)
T PTZ00058 237 AKRIGIA-------GSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITH 298 (561)
T ss_pred CCEEEEE-------CCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 5666666 5556789999999999999999984432 134566677888888899987754
No 195
>PRK06182 short chain dehydrogenase; Validated
Probab=52.53 E-value=74 Score=28.08 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=43.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee--hhchhHHH---
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--AKGQETIN--- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~--~k~~~~i~--- 146 (282)
|++|+||+.. -+|+ +=.++++.|.+.|++|..+..+ .+ .+ +++...++..+. -.....+.
T Consensus 1 ~~~k~vlItG----asgg--iG~~la~~l~~~G~~V~~~~r~-~~-------~l-~~~~~~~~~~~~~Dv~~~~~~~~~~ 65 (273)
T PRK06182 1 MQKKVALVTG----ASSG--IGKATARRLAAQGYTVYGAARR-VD-------KM-EDLASLGVHPLSLDVTDEASIKAAV 65 (273)
T ss_pred CCCCEEEEEC----CCCh--HHHHHHHHHHHCCCEEEEEeCC-HH-------HH-HHHHhCCCeEEEeeCCCHHHHHHHH
Confidence 5677777664 2333 5667899999999998877632 21 11 233344555442 12222232
Q ss_pred -----HhhccCEEEEechhc
Q 023401 147 -----TALKADLIVLNTAVA 161 (282)
Q Consensus 147 -----~a~~~DLVIaNT~v~ 161 (282)
....+|.||.|....
T Consensus 66 ~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 66 DTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHhcCCCCEEEECCCcC
Confidence 123689999997653
No 196
>PRK12939 short chain dehydrogenase; Provisional
Probab=52.30 E-value=82 Score=26.87 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=45.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc--ee--ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VI--SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~--v~--~~k~~~~i~- 146 (282)
|++|++|+++- +| -+=.++|+.|.+.|++|.++. +..+ . ...+.+++...+.+ ++ +-...+++.
T Consensus 5 ~~~~~vlItGa----~g--~iG~~la~~l~~~G~~v~~~~-r~~~---~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 73 (250)
T PRK12939 5 LAGKRALVTGA----AR--GLGAAFAEALAEAGATVAFND-GLAA---E-ARELAAALEAAGGRAHAIAADLADPASVQR 73 (250)
T ss_pred CCCCEEEEeCC----CC--hHHHHHHHHHHHcCCEEEEEe-CCHH---H-HHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 67888887652 23 256788999999999987774 3221 1 11234455444432 22 112222222
Q ss_pred ---H----hhccCEEEEechhc
Q 023401 147 ---T----ALKADLIVLNTAVA 161 (282)
Q Consensus 147 ---~----a~~~DLVIaNT~v~ 161 (282)
. ..++|.||.|..+.
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 74 FFDAAAAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 1 24689999998653
No 197
>PLN00016 RNA-binding protein; Provisional
Probab=52.24 E-value=93 Score=29.47 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=46.8
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhh---hhhHHHHHHcCCceeehhch--hHHHHh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI---YSLEHKMWDRGVQVISAKGQ--ETINTA 148 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~---~~L~~kll~rgI~v~~~k~~--~~i~~a 148 (282)
.|+||+++-..+-||- +=-+|++.|.+.|++|.++...... ...+. ..-..++...|+..+..... ..+-..
T Consensus 52 ~~~VLVt~~~~GatG~--iG~~lv~~L~~~G~~V~~l~R~~~~-~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~ 128 (378)
T PLN00016 52 KKKVLIVNTNSGGHAF--IGFYLAKELVKAGHEVTLFTRGKEP-SQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAG 128 (378)
T ss_pred cceEEEEeccCCCcee--EhHHHHHHHHHCCCEEEEEecCCcc-hhhhccCchhhhhHhhhcCceEEEecHHHHHhhhcc
Confidence 3679988777777764 5567888888999999998854321 01000 00012333446665533111 112123
Q ss_pred hccCEEEEec
Q 023401 149 LKADLIVLNT 158 (282)
Q Consensus 149 ~~~DLVIaNT 158 (282)
.++|.||.+.
T Consensus 129 ~~~d~Vi~~~ 138 (378)
T PLN00016 129 AGFDVVYDNN 138 (378)
T ss_pred CCccEEEeCC
Confidence 4689888764
No 198
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=52.14 E-value=56 Score=32.11 Aligned_cols=59 Identities=22% Similarity=0.359 Sum_probs=44.3
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
.|++++| |+=..=+|+|..|.+.|.+|.++..... ..+.++...+.+.+.++||++...
T Consensus 166 ~~~vvII-------GgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~ 227 (450)
T TIGR01421 166 PKRVVIV-------GAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKL 227 (450)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcC
Confidence 3666666 4556789999999999999999984432 134566677888888899988754
No 199
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=52.13 E-value=63 Score=31.42 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=42.4
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
.|++++|. |+ ..-+|+|..|++.|.+|.++....- ..+.++...+++.+.++||.+...
T Consensus 172 ~~~vvVvG------gG-~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~ 233 (462)
T PRK06416 172 PKSLVVIG------GG-YIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTG 233 (462)
T ss_pred CCeEEEEC------CC-HHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeC
Confidence 46677774 33 4678999999999999998874321 123456666788888889988755
No 200
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=51.78 E-value=70 Score=31.77 Aligned_cols=75 Identities=24% Similarity=0.288 Sum_probs=53.8
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHH----HcCCceeehh-----chhHHH-
Q 023401 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW----DRGVQVISAK-----GQETIN- 146 (282)
Q Consensus 77 ILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll----~rgI~v~~~k-----~~~~i~- 146 (282)
||||+ -|.+|----+--||.+|++.|..|.+-+ |+ -+-.+=.+++. +.|++++..+ +-..++
T Consensus 142 il~vG--VNG~GKTTTIaKLA~~l~~~g~~VllaA---~D---TFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDA 213 (340)
T COG0552 142 ILFVG--VNGVGKTTTIAKLAKYLKQQGKSVLLAA---GD---TFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDA 213 (340)
T ss_pred EEEEe--cCCCchHhHHHHHHHHHHHCCCeEEEEe---cc---hHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHH
Confidence 45554 6788999999999999999999999999 33 22223334443 4499999732 222333
Q ss_pred ----HhhccCEEEEech
Q 023401 147 ----TALKADLIVLNTA 159 (282)
Q Consensus 147 ----~a~~~DLVIaNT~ 159 (282)
.++++|+|++-|+
T Consensus 214 i~~Akar~~DvvliDTA 230 (340)
T COG0552 214 IQAAKARGIDVVLIDTA 230 (340)
T ss_pred HHHHHHcCCCEEEEeCc
Confidence 4888999999998
No 201
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.61 E-value=88 Score=26.55 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=43.7
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcC--Ccee--ehhchhHHH--
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG--VQVI--SAKGQETIN-- 146 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rg--I~v~--~~k~~~~i~-- 146 (282)
++|+||++.- ||+ +=.++++.|.+.|++|.++..+..+.. ..+.+.+.+.+ +.++ +-...+++.
T Consensus 4 ~~~~ilI~Ga----sg~--iG~~la~~l~~~g~~v~~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 73 (247)
T PRK05565 4 MGKVAIVTGA----SGG--IGRAIAELLAKEGAKVVIAYDINEEAA----QELLEEIKEEGGDAIAVKADVSSEEDVENL 73 (247)
T ss_pred CCCEEEEeCC----CcH--HHHHHHHHHHHCCCEEEEEcCCCHHHH----HHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 4677888753 232 557888888899999988744433211 12344444433 3222 112222232
Q ss_pred ------HhhccCEEEEechhc
Q 023401 147 ------TALKADLIVLNTAVA 161 (282)
Q Consensus 147 ------~a~~~DLVIaNT~v~ 161 (282)
....+|.||.|....
T Consensus 74 ~~~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 74 VEQIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHHHHHhCCCCEEEECCCcC
Confidence 123699999988654
No 202
>PRK06194 hypothetical protein; Provisional
Probab=51.60 E-value=99 Score=27.36 Aligned_cols=79 Identities=13% Similarity=0.211 Sum_probs=44.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHHHH
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETINT 147 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~--~~k~~~~i~~ 147 (282)
|++|++|+.. |+-=+=.++++.|.+.|++|.++... .+ -...+.+++...|..+ + +-...+++..
T Consensus 4 ~~~k~vlVtG------asggIG~~la~~l~~~G~~V~~~~r~-~~----~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~ 72 (287)
T PRK06194 4 FAGKVAVITG------AASGFGLAFARIGAALGMKLVLADVQ-QD----ALDRAVAELRAQGAEVLGVRTDVSDAAQVEA 72 (287)
T ss_pred CCCCEEEEeC------CccHHHHHHHHHHHHCCCEEEEEeCC-hH----HHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 5678777643 22335678999999999998766532 21 1112344454445443 2 1122223321
Q ss_pred --------hhccCEEEEechhc
Q 023401 148 --------ALKADLIVLNTAVA 161 (282)
Q Consensus 148 --------a~~~DLVIaNT~v~ 161 (282)
....|.||.|....
T Consensus 73 ~~~~~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 73 LADAALERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 23579999998764
No 203
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=51.49 E-value=32 Score=32.25 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=42.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCe-EEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTK-VNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ 142 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~-V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~ 142 (282)
.+||++++| |+-..-+|+|..|.+.|.. |.++..+.. ...+....+.+++.++||+++.....
T Consensus 170 ~~g~~vvVi-------G~G~~g~e~A~~l~~~g~~~Vtvi~~~~~-~~~~~~~~~~~~l~~~gi~i~~~~~v 233 (352)
T PRK12770 170 VEGKKVVVV-------GAGLTAVDAALEAVLLGAEKVYLAYRRTI-NEAPAGKYEIERLIARGVEFLELVTP 233 (352)
T ss_pred cCCCEEEEE-------CCCHHHHHHHHHHHHcCCCeEEEEeecch-hhCCCCHHHHHHHHHcCCEEeeccCc
Confidence 357888888 4456789999999888997 888763321 11112223456788899998876433
No 204
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=51.02 E-value=55 Score=28.73 Aligned_cols=58 Identities=16% Similarity=0.219 Sum_probs=39.5
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE---EEeccCCCCchhhhhhhHHHHHHcCCceeeh
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN---WITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~---vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
+-+|++||+|=.-.+ ||+ -+.++++.|++.|.+|+ ++..+ +. +-.+++.+.|+++..=
T Consensus 104 ~~~g~~VlIVDDvit-TG~--Tl~~~~~~l~~~Ga~vv~~~vlvdr-~~-------~~~~~l~~~g~~v~sL 164 (176)
T PRK13812 104 LDEGEEVVVLEDIAT-TGQ--SAVDAVEALREAGATVNRVLVVVDR-EE-------GARENLADHDVELEAL 164 (176)
T ss_pred CCCcCEEEEEEEeeC-CCH--HHHHHHHHHHHCCCeEEEEEEEEEC-Cc-------chHHHHHhcCCcEEEE
Confidence 348999999865555 555 57888999999998854 33344 32 1135677788888743
No 205
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=50.91 E-value=67 Score=31.48 Aligned_cols=59 Identities=24% Similarity=0.487 Sum_probs=42.8
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC---CCCchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK---PSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~---G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
.|+|++| |+=..-+|+|..|++.|.+|.++-... +..+.++...+++.+.++||++...
T Consensus 172 ~~~vvVI-------GgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~ 233 (466)
T PRK07818 172 PKSIVIA-------GAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTG 233 (466)
T ss_pred CCeEEEE-------CCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEEC
Confidence 4666666 333468999999999999999876322 1134456677888888999998865
No 206
>PRK07890 short chain dehydrogenase; Provisional
Probab=50.80 E-value=80 Score=27.24 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=45.5
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHH
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETI 145 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~--~~k~~~~i 145 (282)
.||.+|+||+.. |+.-+=.++|+.|-+.|.+|.++... .+ .. ..+.+++.+.+..+ + +-...+++
T Consensus 1 ~~l~~k~vlItG------a~~~IG~~la~~l~~~G~~V~~~~r~-~~---~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~ 69 (258)
T PRK07890 1 MLLKGKVVVVSG------VGPGLGRTLAVRAARAGADVVLAART-AE---RL-DEVAAEIDDLGRRALAVPTDITDEDQC 69 (258)
T ss_pred CccCCCEEEEEC------CCCcHHHHHHHHHHHcCCEEEEEeCC-HH---HH-HHHHHHHHHhCCceEEEecCCCCHHHH
Confidence 378888877654 33347778999999999988766532 21 11 22344444333322 1 11222222
Q ss_pred H--------HhhccCEEEEechh
Q 023401 146 N--------TALKADLIVLNTAV 160 (282)
Q Consensus 146 ~--------~a~~~DLVIaNT~v 160 (282)
. ....+|.||.|...
T Consensus 70 ~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 70 ANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHcCCccEEEECCcc
Confidence 2 12468999998754
No 207
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=50.78 E-value=60 Score=28.55 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=40.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeeh
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISA 139 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r-gI~v~~~ 139 (282)
.++|+|++|. +-..-+|+|..|.+.|.+|.++....... ....+.+.+.++ |++++..
T Consensus 139 ~~~~~v~ViG-------~G~~~~e~a~~l~~~~~~V~~v~~~~~~~---~~~~~~~~l~~~~gv~~~~~ 197 (300)
T TIGR01292 139 FKNKEVAVVG-------GGDSAIEEALYLTRIAKKVTLVHRRDKFR---AEKILLDRLRKNPNIEFLWN 197 (300)
T ss_pred cCCCEEEEEC-------CChHHHHHHHHHHhhcCEEEEEEeCcccC---cCHHHHHHHHhCCCeEEEec
Confidence 3667777763 33467899999999999999998554321 123456777777 8888754
No 208
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=50.75 E-value=72 Score=32.84 Aligned_cols=103 Identities=21% Similarity=0.162 Sum_probs=61.3
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhchhH-H
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKGQET-I 145 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~~~v~~~L~~kll~r--gI~v~~~k~~~~-i 145 (282)
.+..|||+.+. |+|-.+..++..|. +.|.+++....+.+. .++. ++.+... +.-++++....+ .
T Consensus 324 ~~L~GKrvai~-------~gg~~~~~~~~~l~~ElGmevv~~~t~~~~-~~d~----~~~~~~~~~~~~~i~D~~~~e~~ 391 (513)
T TIGR01861 324 ERLKGKKVCLW-------PGGSKLWHWAHVIEEEMGLKVVSVYSKFGH-QGDM----EKGVARCGEGALAIDDPNELEGL 391 (513)
T ss_pred HhcCCCEEEEE-------CCchHHHHHHHHHHHhCCCEEEEEeccCCC-HHHH----HHHHHhCCCCcEEecCCCHHHHH
Confidence 57799999875 34668899998888 699999888765542 1222 2222222 444555433222 1
Q ss_pred H--HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc
Q 023401 146 N--TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK 193 (282)
Q Consensus 146 ~--~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~ 193 (282)
+ ...++|++|.|+=- +++. .|.++ |.+--.+|-++-|..
T Consensus 392 ~~l~~~~~Dllig~s~~--~~~A--~k~gI-----P~ld~~~~~~~p~~G 432 (513)
T TIGR01861 392 EAMEMLKPDIILTGKRP--GEVS--KKMRV-----PYLNAHAYHNGPYKG 432 (513)
T ss_pred HHHHhcCCCEEEecCcc--chhH--hhcCC-----CEEEccCCCCCCcch
Confidence 2 35679999999863 3332 12345 555556665444433
No 209
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=50.64 E-value=58 Score=33.69 Aligned_cols=69 Identities=13% Similarity=0.058 Sum_probs=42.7
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEecc-CCCCchhhhhhhHHHHHHcCCceeehhc---hhHHH--HhhccCEEEE
Q 023401 88 GGPLLLMELAFLLRGVGTKVNWITIQ-KPSEEDEVIYSLEHKMWDRGVQVISAKG---QETIN--TALKADLIVL 156 (282)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~-~G~~~~~v~~~L~~kll~rgI~v~~~k~---~~~i~--~a~~~DLVIa 156 (282)
|.|-+-.-..+.|.+.|++++.+..+ +.+.+.....++.+...+.|||++.-.. .+.+. ...++|++|+
T Consensus 7 g~~~~a~~~l~~L~~~~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~D~iv~ 81 (660)
T PRK08125 7 AYHDIGCVGIEALLAAGYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVNHPLWVERIRELAPDVIFS 81 (660)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCCcHHHHHHHHhcCCCEEEE
Confidence 55555555567777789999955533 2222223334678888889999985321 12222 2568999985
No 210
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=50.39 E-value=86 Score=31.48 Aligned_cols=109 Identities=15% Similarity=0.145 Sum_probs=61.2
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe--ccCCCCchhhhhhhHHHHHH---cCCceeehhchhHH
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT--IQKPSEEDEVIYSLEHKMWD---RGVQVISAKGQETI 145 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~--~~~G~~~~~v~~~L~~kll~---rgI~v~~~k~~~~i 145 (282)
+..||++.+.. .|-.+..+++.|.+.|.+++++. .+.+..++. ...+++.+ .+..++.+.....+
T Consensus 302 ~l~Gkrv~i~g-------~~~~~~~l~~fl~elGm~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~vi~~~d~~e~ 371 (454)
T cd01973 302 FFANKKVAIFG-------HPDLVIGLAEFCLEVEMKPVLLLLGDDNSKYKKD---PRIKALKEKADYDMEIVTNADLWEL 371 (454)
T ss_pred HhCCCeEEEEc-------CHHHHHHHHHHHHHCCCeEEEEEECCCCcccchh---HHHHHHHhhcCCCceEEECCCHHHH
Confidence 57899997663 46678999999999999987755 222221111 11233322 23456655444444
Q ss_pred H-Hh----hccCEEEEechhchHHHHHHhhccCCCC--CCceEEEeeeccccccc
Q 023401 146 N-TA----LKADLIVLNTAVAGKWLDAVLKEDVPRV--LPNVLWWIHEMRGHYFK 193 (282)
Q Consensus 146 ~-~a----~~~DLVIaNT~v~g~wl~~l~~~~~~~~--~~pVIWWIHE~r~~Yf~ 193 (282)
. .+ .++|++|.|+-. +++..= .++|.. ..|+.--++..++.|..
T Consensus 372 ~~~i~~~~~~~dliig~s~~--~~~A~~--~gip~~~~g~Pv~dr~~~~~~~~~G 422 (454)
T cd01973 372 EKRIKNKGLELDLILGHSKG--RYIAID--NNIPMVRVGFPTFDRAGLYRHPVIG 422 (454)
T ss_pred HHHHHhcCCCCCEEEECCcc--HHHHHH--cCCCEEEecCCeeeeccccCCCCCc
Confidence 3 22 348999999963 444422 355443 23555445544444444
No 211
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=50.37 E-value=69 Score=30.26 Aligned_cols=70 Identities=21% Similarity=0.265 Sum_probs=45.3
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccCCCC----chhhhhhhHHHHHHcCCceeehhc---hhHHH--HhhccCEEEEe
Q 023401 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSE----EDEVIYSLEHKMWDRGVQVISAKG---QETIN--TALKADLIVLN 157 (282)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~G~~----~~~v~~~L~~kll~rgI~v~~~k~---~~~i~--~a~~~DLVIaN 157 (282)
|.+-+-....+.|.+.|++++.+..+.... ......++.+...+.|||++.-.. .+.++ ...++|++|+-
T Consensus 7 G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~l~~~~~Dliv~~ 85 (309)
T PRK00005 7 GTPEFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAELAALNADVIVVV 85 (309)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHHHHhcCcCEEEEe
Confidence 667777888888888899988666432211 111234678888888999985322 12222 35689999875
No 212
>PRK06057 short chain dehydrogenase; Provisional
Probab=50.19 E-value=1.2e+02 Score=26.49 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=27.0
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
..|+||+||++.- + .-+=.++++.|.+.|++|.++..
T Consensus 3 ~~~~~~~vlItGa----s--ggIG~~~a~~l~~~G~~v~~~~r 39 (255)
T PRK06057 3 QRLAGRVAVITGG----G--SGIGLATARRLAAEGATVVVGDI 39 (255)
T ss_pred ccCCCCEEEEECC----C--chHHHHHHHHHHHcCCEEEEEeC
Confidence 3478998887542 2 33667888999999999877763
No 213
>PRK06701 short chain dehydrogenase; Provisional
Probab=50.16 E-value=1.4e+02 Score=27.12 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=28.0
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
...+++|++|+++- +.-+=.++++.|.+.|.+|.++..
T Consensus 41 ~~~~~~k~iLItGa------sggIG~~la~~l~~~G~~V~l~~r 78 (290)
T PRK06701 41 SGKLKGKVALITGG------DSGIGRAVAVLFAKEGADIAIVYL 78 (290)
T ss_pred ccCCCCCEEEEeCC------CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 35778898887652 233667889999999999877654
No 214
>PRK07806 short chain dehydrogenase; Provisional
Probab=50.14 E-value=1.2e+02 Score=26.04 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=25.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
|++|++|+.. -+|+ +=.++++.|.+.|++|.++..
T Consensus 4 ~~~k~vlItG----asgg--iG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 4 LPGKTALVTG----SSRG--IGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCCcEEEEEC----CCCc--HHHHHHHHHHHCCCEEEEEeC
Confidence 5678777764 2332 557788999999999877653
No 215
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=50.07 E-value=42 Score=32.60 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=33.8
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (282)
-++||++++| .|.=.||+- |.+.++.|++.|+..+....-+|-
T Consensus 215 dv~Gk~VIIV-DDIi~TG~T--l~~aa~~Lk~~GA~~V~~~atHgl 257 (332)
T PRK00553 215 EVKNKNCLIV-DDMIDTGGT--VIAAAKLLKKQKAKKVCVMATHGL 257 (332)
T ss_pred cCCCCEEEEE-eccccchHH--HHHHHHHHHHcCCcEEEEEEEeee
Confidence 3689988777 566777774 788999999999997777766663
No 216
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=50.04 E-value=2.2e+02 Score=27.06 Aligned_cols=125 Identities=10% Similarity=0.110 Sum_probs=61.6
Q ss_pred EeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh-----hchhHHHHhhccCEE
Q 023401 80 VSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-----KGQETINTALKADLI 154 (282)
Q Consensus 80 ISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~-----k~~~~i~~a~~~DLV 154 (282)
=.|=+|.. =-..+..|++.|++.+.++.++..--.+.+. .+.++....++.+..- ...+.+-...++|+|
T Consensus 54 W~Ha~s~G-e~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~----~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v 128 (425)
T PRK05749 54 WFHAVSVG-ETRAAIPLIRALRKRYPDLPILVTTMTPTGS----ERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLV 128 (425)
T ss_pred EEEeCCHH-HHHHHHHHHHHHHHhCCCCcEEEeCCCccHH----HHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEE
Confidence 46777764 7788999999999987554443211111111 2233433334444321 111122124679999
Q ss_pred EEechhchHHHHHHhhccCCCCCCceEEEeeec-cc---ccc---c-----ccccccccccccccccchhhHHHHHH
Q 023401 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEM-RG---HYF---K-----LDYVKHLPLVAGAMIDSHVTAEYWKN 219 (282)
Q Consensus 155 IaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~-r~---~Yf---~-----l~~vkhL~~v~~~~~dS~Ata~~w~~ 219 (282)
+...- .-|...+..-+ .... |++-+=|-+ +. .|. . +++++++..+ |+..++++.+
T Consensus 129 ~~~~~--~~~~~~l~~~~-~~~i-p~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~------S~~~~~~l~~ 195 (425)
T PRK05749 129 IIMET--ELWPNLIAELK-RRGI-PLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQ------SEEDAERFLA 195 (425)
T ss_pred EEEec--chhHHHHHHHH-HCCC-CEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEEC------CHHHHHHHHH
Confidence 86522 22333221111 1223 554332322 11 111 1 3456667777 9999998875
No 217
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=50.00 E-value=56 Score=22.98 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=27.3
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Q 023401 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275 (282)
Q Consensus 238 ~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~ 275 (282)
|.+++.-+ ++.+ .+-+.+.+.+|+|++|+.|.+
T Consensus 11 Grs~eqk~----~l~~-~it~~l~~~~~~p~~~v~V~i 43 (61)
T PRK02220 11 GRTEEQLK----ALVK-DVTAAVSKNTGAPAEHIHVII 43 (61)
T ss_pred CCCHHHHH----HHHH-HHHHHHHHHhCcChhhEEEEE
Confidence 56777777 7777 788899999999999988765
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=49.98 E-value=1.3e+02 Score=30.95 Aligned_cols=84 Identities=19% Similarity=0.307 Sum_probs=56.7
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHH----HHhh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETI----NTAL 149 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i----~~a~ 149 (282)
.+.|.||+- +.+|=--.+..||..|.+.|..|-++.....- -+ -+.-|..-....|++++.......+ ..+.
T Consensus 241 ~~vI~LVGp--tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R-ia-AvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 241 VQTIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IG-TVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CcEEEEECC--CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc-hH-HHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 467888887 88899999999999999999999988843221 01 1122233333358998855433333 2222
Q ss_pred ---ccCEEEEechhc
Q 023401 150 ---KADLIVLNTAVA 161 (282)
Q Consensus 150 ---~~DLVIaNT~v~ 161 (282)
++|+||+-|+-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 589999999855
No 219
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.97 E-value=1.4e+02 Score=25.89 Aligned_cols=38 Identities=11% Similarity=0.032 Sum_probs=24.1
Q ss_pred EEEEEeccC-CCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 76 LVLLVSHEL-SLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 76 kILLISHEL-s~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
||-+|.++. +-.--.-++-.+-..+++.|.++.+....
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~ 39 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGPE 39 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 466777775 43333345556667778888888776543
No 220
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=49.81 E-value=48 Score=33.26 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=55.7
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch------hHH
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------ETI 145 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~------~~i 145 (282)
.+|.+|...-|=---|+ .|+.-|+..|++|.|..++-....|++...| .+.||+|+..+++ ..+
T Consensus 34 ~~g~~i~~~~hl~~~ta------~l~~~L~~~GA~v~~~~~np~stqd~vaa~l----~~~gi~v~a~~~~~~~~y~~~~ 103 (413)
T cd00401 34 LKGARIAGCLHMTVQTA------VLIETLVALGAEVRWSSCNIFSTQDHAAAAI----AAAGIPVFAWKGETLEEYWWCI 103 (413)
T ss_pred CCCCEEEEEEcchHHHH------HHHHHHHHcCCEEEEEcCCCccchHHHHHHH----HhcCceEEEEcCCCHHHHHHHH
Confidence 47999999999665553 4788899999999999987777788884444 4669999975433 233
Q ss_pred HHhh-----ccCEEEEech
Q 023401 146 NTAL-----KADLIVLNTA 159 (282)
Q Consensus 146 ~~a~-----~~DLVIaNT~ 159 (282)
+.+. ++|+|+=+-.
T Consensus 104 ~~~l~~~~~~p~~i~DdGg 122 (413)
T cd00401 104 EQALKFPDGEPNMILDDGG 122 (413)
T ss_pred HHHHhccCCCCcEEEecch
Confidence 3332 5787775543
No 221
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=49.66 E-value=1.4e+02 Score=29.45 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=61.3
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCC-CeEEEEecc--CCCCchhhhhhhHHHHHHcCCc-------eee
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG-TKVNWITIQ--KPSEEDEVIYSLEHKMWDRGVQ-------VIS 138 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G-~~V~vL~~~--~G~~~~~v~~~L~~kll~rgI~-------v~~ 138 (282)
..+.+||++++.. .|-....+++.|.+.| .+|..+... .++++.. ..++++++.|.. +..
T Consensus 288 ~~~l~Gk~~~i~~-------~~~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 357 (426)
T cd01972 288 RKALKGKKAIVET-------GAAYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRG---DSEKDLLEHGVDPEIDITKYTV 357 (426)
T ss_pred HHHhCCCEEEEEe-------CCccHHHHHHHHHHcCCceEEEEEeccCchhhhcc---hhHHHHhcCCcccccccceeee
Confidence 3567999997664 2335677788899999 998877542 1111111 113456665552 112
Q ss_pred hh-chhHHH---HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc
Q 023401 139 AK-GQETIN---TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK 193 (282)
Q Consensus 139 ~k-~~~~i~---~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~ 193 (282)
+. ...++. ...+.|++|.++-.-.+|.. .|-.+ |++..-+|..+.|+.
T Consensus 358 ~~~~~~e~~~~l~~~~pDl~i~~~~~~~~~~~--~~~gi-----p~~~~~~~~~~~~~G 409 (426)
T cd01972 358 SNGQYYQFYNLLKRVKPDFIIFRHGGLFPDAT--VYLGI-----PVVPLNDELNQPQFG 409 (426)
T ss_pred cCCCHHHHHHHHHHhCCCEEEEcCCCccHHHH--HhcCC-----CEEeccccccCCccc
Confidence 21 112221 24578999988754444443 22233 888887775555665
No 222
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=49.64 E-value=11 Score=30.53 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHH----------HHhhccCEEEEech
Q 023401 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETI----------NTALKADLIVLNTA 159 (282)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i----------~~a~~~DLVIaNT~ 159 (282)
+=.-+|-.|.+.|++|.++...+. .+.+.+.|+.+....+...+ .....+|+||+-|=
T Consensus 9 iG~~~a~~L~~~g~~V~l~~r~~~----------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 9 IGSLYAARLAQAGHDVTLVSRSPR----------LEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp HHHHHHHHHHHTTCEEEEEESHHH----------HHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred HHHHHHHHHHHCCCceEEEEcccc----------HHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 344578888889999999994421 35577778877765422211 13677999999874
No 223
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=49.58 E-value=35 Score=25.93 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc
Q 023401 94 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG 141 (282)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~ 141 (282)
..++..|.+.|.++++..+-++ +..++|.++||+++....
T Consensus 53 ~~~~~~l~~~~v~~vi~~~iG~--------~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 53 GKAAEFLADEGVDVVIVGGIGP--------RALNKLRNAGIKVYKGAE 92 (103)
T ss_pred hHHHHHHHHcCCCEEEeCCCCc--------CHHHHHHHCCCEEEEcCC
Confidence 4577788888999988876544 457899999999997654
No 224
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.47 E-value=90 Score=26.77 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=43.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCC--cee--ehhchhHH--
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV--QVI--SAKGQETI-- 145 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI--~v~--~~k~~~~i-- 145 (282)
|.+|++|+.+- +|+ +=.++++.|.+.|++|.++..+..+. ...+.+++...+- ..+ +....+.+
T Consensus 2 ~~~~~vlItGa----~g~--iG~~~a~~l~~~g~~v~~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (250)
T PRK08063 2 FSGKVALVTGS----SRG--IGKAIALRLAEEGYDIAVNYARSRKA----AEETAEEIEALGRKALAVKANVGDVEKIKE 71 (250)
T ss_pred CCCCEEEEeCC----Cch--HHHHHHHHHHHCCCEEEEEcCCCHHH----HHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 45676666532 233 55689999999999988765444421 1123444444332 222 11222222
Q ss_pred --HH----hhccCEEEEechh
Q 023401 146 --NT----ALKADLIVLNTAV 160 (282)
Q Consensus 146 --~~----a~~~DLVIaNT~v 160 (282)
+. ...+|.||.|...
T Consensus 72 ~~~~~~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 72 MFAQIDEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 21 2358999999864
No 225
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=49.39 E-value=69 Score=31.57 Aligned_cols=59 Identities=15% Similarity=0.288 Sum_probs=42.9
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
+|+|++| |+=..-+|+|..|++.|.+|.++...... .+.++...+.+.|.++||++...
T Consensus 183 ~~~vvVv-------GgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~ 244 (475)
T PRK06327 183 PKKLAVI-------GAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLG 244 (475)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeC
Confidence 4666666 44446789999999999999988743221 24566667788888889988755
No 226
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=49.37 E-value=58 Score=28.85 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=37.3
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe--ccCCCCchhhhhhhHHHH-HHcCCceee
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT--IQKPSEEDEVIYSLEHKM-WDRGVQVIS 138 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~--~~~G~~~~~v~~~L~~kl-l~rgI~v~~ 138 (282)
..+|++||+|= |.=.||+ -+.+.++.|++.|.+++-+. ...+..+ + .+++ .+.|+|+..
T Consensus 111 ~~~G~rVlIVD-DvitTG~--T~~~ai~ll~~aGa~vv~v~~vvd~~~~~-----g-~~~l~~~~gv~v~s 172 (187)
T PRK12560 111 IEKGDRVAIID-DTLSTGG--TVIALIKAIENSGGIVSDVICVIEKTQNN-----G-RKKLFTQTGINVKS 172 (187)
T ss_pred CCCcCEEEEEE-eccccCH--HHHHHHHHHHHCCCEEEEEEEEEEecccc-----h-HHHHhhccCCcEEE
Confidence 56899999885 5556666 45888999999999853322 2222110 1 2344 447888764
No 227
>PRK14694 putative mercuric reductase; Provisional
Probab=49.32 E-value=74 Score=31.25 Aligned_cols=59 Identities=20% Similarity=0.416 Sum_probs=43.5
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC--CCCchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK--PSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~--G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
+|++++| |+=..-+|+|..|++.|.+|.++.... +....++...+++.+.++||.+...
T Consensus 178 ~~~vvVi-------G~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~ 238 (468)
T PRK14694 178 PERLLVI-------GASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQ 238 (468)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeC
Confidence 5677777 333468899999999999999997321 1124566677888888899998865
No 228
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=49.28 E-value=32 Score=35.34 Aligned_cols=59 Identities=25% Similarity=0.368 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccCEEEEechhc
Q 023401 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVA 161 (282)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~DLVIaNT~v~ 161 (282)
-|--||..|++.|++|+ |+ |--.++..++++++|++++.--..+ ...+.|.||.-|++.
T Consensus 19 GMsglA~iL~~~G~~Vs------GS--D~~~~~~t~~L~~~G~~i~~gh~~~---ni~~~~~VV~s~Ai~ 77 (459)
T COG0773 19 GMSGLAEILLNLGYKVS------GS--DLAESPMTQRLEALGIEIFIGHDAE---NILDADVVVVSNAIK 77 (459)
T ss_pred cHHHHHHHHHhCCCceE------Cc--cccccHHHHHHHHCCCeEeCCCCHH---HcCCCceEEEecccC
Confidence 57789999999999996 43 2233467899999999999774444 345667788777765
No 229
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=49.28 E-value=1.2e+02 Score=25.88 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=42.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--ee-h-hchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--IS-A-KGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~~-~-k~~~~i~- 146 (282)
|++|+||+.+ -+|+ +=.++++.|.+.|++|.++..+... .. .+.+++...+..+ +. | ...+++.
T Consensus 2 ~~~~~vlItG----~sg~--iG~~la~~l~~~g~~v~~~~r~~~~-~~----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 70 (258)
T PRK12429 2 LKGKVALVTG----AASG--IGLEIALALAKEGAKVVIADLNDEA-AA----AAAEALQKAGGKAIGVAMDVTDEEAINA 70 (258)
T ss_pred CCCCEEEEEC----CCch--HHHHHHHHHHHCCCeEEEEeCCHHH-HH----HHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 4667777653 2232 5578999999999999887643221 11 2334444444332 21 1 2222222
Q ss_pred -------HhhccCEEEEechh
Q 023401 147 -------TALKADLIVLNTAV 160 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v 160 (282)
....+|.||.|+..
T Consensus 71 ~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 71 GIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 12368999998864
No 230
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=48.90 E-value=55 Score=32.84 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=55.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh------chhHH
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------GQETI 145 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k------~~~~i 145 (282)
.+|.+|...-|=---|. .|+.-|+..|++|.|..++-.+..|++.. -+.+.||+|+-.+ +...+
T Consensus 30 l~G~~i~~~~hl~~~Ta------~l~~~L~~~GA~v~~~~~np~stqd~vaa----aL~~~gi~v~a~~~~~~~ey~~~~ 99 (406)
T TIGR00936 30 LKGARIAACLHVTVETA------VLIETLVAGGAEVAWTSCNPLSTQDDVAA----ALAKAGIPVFAWRGETNEEYYWAI 99 (406)
T ss_pred CCCCEEEEEEechHHHH------HHHHHHHHcCCEEEEEccCCccccHHHHH----HHHhCCceEEEecCCCHHHHHHHH
Confidence 47999999999665554 57888999999999999876677888844 4456799999433 32333
Q ss_pred HH--hhccCEEEEech
Q 023401 146 NT--ALKADLIVLNTA 159 (282)
Q Consensus 146 ~~--a~~~DLVIaNT~ 159 (282)
.. ..++|+|+=+-.
T Consensus 100 ~~~l~~~p~~iiDdGg 115 (406)
T TIGR00936 100 EQVLDHEPNIIIDDGA 115 (406)
T ss_pred HHHhcCCCCEEEeccc
Confidence 32 245777776543
No 231
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=48.84 E-value=57 Score=30.34 Aligned_cols=81 Identities=25% Similarity=0.251 Sum_probs=51.1
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHh----CC--CeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeehhchhH
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRG----VG--TKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISAKGQET 144 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq----~G--~~V~vL~~~~G---~~~~~v~~~L~~kll~rgI~v~~~k~~~~ 144 (282)
+|+|++| |+...-+|+|..|.+ .| .+|.++. ... ....++...+++.+.++||++........
T Consensus 145 ~~~vvVv-------G~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 216 (364)
T TIGR03169 145 TKRLAVV-------GGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTR 216 (364)
T ss_pred CceEEEE-------CCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEE
Confidence 4678777 566678888877764 45 4787773 211 12234556677888888999886532222
Q ss_pred HH---------HhhccCEEEEechhch
Q 023401 145 IN---------TALKADLIVLNTAVAG 162 (282)
Q Consensus 145 i~---------~a~~~DLVIaNT~v~g 162 (282)
++ ....+|+||.-|-...
T Consensus 217 i~~~~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 217 GPDGALILADGRTLPADAILWATGARA 243 (364)
T ss_pred EcCCeEEeCCCCEEecCEEEEccCCCh
Confidence 21 2345899998876544
No 232
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.66 E-value=1e+02 Score=26.27 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=23.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
+++|+||++. -+| -+=.++++.|.+.|++|.++..
T Consensus 3 ~~~~~vlItG----asg--~iG~~l~~~l~~~G~~V~~~~r 37 (251)
T PRK07231 3 LEGKVAIVTG----ASS--GIGEGIARRFAAEGARVVVTDR 37 (251)
T ss_pred cCCcEEEEEC----CCC--hHHHHHHHHHHHCCCEEEEEeC
Confidence 4667666652 222 2556888999999999766653
No 233
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=48.58 E-value=17 Score=29.15 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=23.4
Q ss_pred hhHHHHHHcCCceeehhchhHHHHhhccCEEEEechh
Q 023401 124 SLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAV 160 (282)
Q Consensus 124 ~L~~kll~rgI~v~~~k~~~~i~~a~~~DLVIaNT~v 160 (282)
-+...|.+.|..+..+ ..++|+||.||=.
T Consensus 18 ~i~~~l~~~G~~~~~~--------~e~AD~iiiNTC~ 46 (98)
T PF00919_consen 18 RIASILQAAGYEIVDD--------PEEADVIIINTCT 46 (98)
T ss_pred HHHHHHHhcCCeeecc--------cccCCEEEEEcCC
Confidence 3677888889888877 4789999999954
No 234
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=48.13 E-value=1.7e+02 Score=24.80 Aligned_cols=99 Identities=22% Similarity=0.176 Sum_probs=54.1
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc--ee-ehhchhHHHHhhc
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VI-SAKGQETINTALK 150 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~--v~-~~k~~~~i~~a~~ 150 (282)
.+.+++++.-. ..-++-.+++++..|++.+-++.++...+|++... +++.+.+.+.+ +. .....+..+...+
T Consensus 178 ~~~i~~~g~~~-~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~----~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 252 (348)
T cd03820 178 SKRILAVGRLV-PQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREA----LEALIKELGLEDRVILLGFTKNIEEYYAK 252 (348)
T ss_pred CcEEEEEEeec-cccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHH----HHHHHHHcCCCCeEEEcCCcchHHHHHHh
Confidence 45677777633 34445567789988887665655555333433222 24444444442 22 1122333346778
Q ss_pred cCEEEEechhc---hHHHHHHhhccCCCCCCceEEE
Q 023401 151 ADLIVLNTAVA---GKWLDAVLKEDVPRVLPNVLWW 183 (282)
Q Consensus 151 ~DLVIaNT~v~---g~wl~~l~~~~~~~~~~pVIWW 183 (282)
+|+++..+... .+.++++ ..+. |||..
T Consensus 253 ad~~i~ps~~e~~~~~~~Ea~-----a~G~-Pvi~~ 282 (348)
T cd03820 253 ASIFVLTSRFEGFPMVLLEAM-----AFGL-PVISF 282 (348)
T ss_pred CCEEEeCccccccCHHHHHHH-----HcCC-CEEEe
Confidence 99999877543 3444444 3344 66654
No 235
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=48.12 E-value=40 Score=33.03 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=38.5
Q ss_pred CCCccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 65 KSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 65 ~~~~~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
..+...=++||++++|=.=.+..| -+.+.|+.||+.|+.=+..++-+|
T Consensus 205 ~~~~~gdV~gk~~iiVDDiIdTgG---Ti~~Aa~~Lk~~GAk~V~a~~tH~ 252 (314)
T COG0462 205 VMNLIGDVEGKDVVIVDDIIDTGG---TIAKAAKALKERGAKKVYAAATHG 252 (314)
T ss_pred EeecccccCCCEEEEEeccccccH---HHHHHHHHHHHCCCCeEEEEEEch
Confidence 356788899999998876666655 488999999999999666666667
No 236
>PRK09186 flagellin modification protein A; Provisional
Probab=47.87 E-value=81 Score=27.18 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=25.1
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
|++||+||+.. -+| -+=.++|+.|.+.|++|.++.
T Consensus 1 ~~~~k~vlItG----as~--giG~~~a~~l~~~g~~v~~~~ 35 (256)
T PRK09186 1 MLKGKTILITG----AGG--LIGSALVKAILEAGGIVIAAD 35 (256)
T ss_pred CCCCCEEEEEC----CCc--hHHHHHHHHHHHCCCEEEEEe
Confidence 56788777653 222 366688999999999987775
No 237
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=47.58 E-value=1.7e+02 Score=24.68 Aligned_cols=42 Identities=21% Similarity=0.056 Sum_probs=30.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
||+.+||+-+-+.+.-.--+ .-++.+|+..|++|+-|..+-+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~--~iv~~~lr~~G~eVi~LG~~vp 42 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGN--KILDRALTEAGFEVINLGVMTS 42 (137)
T ss_pred CCCCEEEEEeCCCChhHHHH--HHHHHHHHHCCCEEEECCCCCC
Confidence 67888988876666553322 3456789999999999986555
No 238
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=47.38 E-value=1e+02 Score=29.73 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=42.3
Q ss_pred HHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHH--HcCCceeehhchhHHHHhhccCEEEEechhc--hHHHHHHhh
Q 023401 95 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW--DRGVQVISAKGQETINTALKADLIVLNTAVA--GKWLDAVLK 170 (282)
Q Consensus 95 eLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll--~rgI~v~~~k~~~~i~~a~~~DLVIaNT~v~--g~wl~~l~~ 170 (282)
.+|++|++.|++|...=.+..+ .. ... .+++ ..|+.+....... ...++|+||...++. .+.+.+..+
T Consensus 13 a~a~~l~~~G~~V~~sD~~~~~---~~-~~~-~~~~~~~~gi~~~~g~~~~---~~~~~d~vv~sp~i~~~~p~~~~a~~ 84 (433)
T TIGR01087 13 AVARFLHKKGAEVTVTDLKPNE---EL-EPS-MGQLRLNEGSVLHTGLHLE---DLNNADLVVKSPGIPPDHPLVQAAAK 84 (433)
T ss_pred HHHHHHHHCCCEEEEEeCCCCc---cc-hhH-HHHHhhccCcEEEecCchH---HhccCCEEEECCCCCCCCHHHHHHHH
Confidence 8899999999998753322111 11 010 1223 3599887652222 236799999999985 455555543
Q ss_pred ccC
Q 023401 171 EDV 173 (282)
Q Consensus 171 ~~~ 173 (282)
.+.
T Consensus 85 ~~i 87 (433)
T TIGR01087 85 RGI 87 (433)
T ss_pred CCC
Confidence 444
No 239
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=47.31 E-value=81 Score=25.12 Aligned_cols=46 Identities=26% Similarity=0.205 Sum_probs=34.6
Q ss_pred CCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee
Q 023401 84 LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS 138 (282)
Q Consensus 84 Ls~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~ 138 (282)
.|.+|----+.+.++..|+.|.+++.+++. + .|.+...+.|..++.
T Consensus 50 iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~-~--------~l~~~~~~~~~~~~~ 95 (119)
T cd05017 50 VSYSGNTEETLSAVEQAKERGAKIVAITSG-G--------KLLEMAREHGVPVII 95 (119)
T ss_pred EECCCCCHHHHHHHHHHHHCCCEEEEEeCC-c--------hHHHHHHHcCCcEEE
Confidence 356777778999999999999999999953 3 245555556777775
No 240
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=47.19 E-value=1.2e+02 Score=30.82 Aligned_cols=109 Identities=14% Similarity=0.218 Sum_probs=65.7
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc--------hhHHH
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------QETIN 146 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~--------~~~i~ 146 (282)
..|+|++ ++.+|=.-....||.+|++.|..|.++.+..- ..--+.-|...-.+.++|++.... .+.+.
T Consensus 101 ~vi~lvG--~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~--R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~ 176 (429)
T TIGR01425 101 NVIMFVG--LQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF--RAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVE 176 (429)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc--chhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHH
Confidence 3566666 88999999999999999999999999984321 111111222223335888874321 12333
Q ss_pred Hh--hccCEEEEechhch----HHHHHHhhccCCCCCCceEEEeeecc
Q 023401 147 TA--LKADLIVLNTAVAG----KWLDAVLKEDVPRVLPNVLWWIHEMR 188 (282)
Q Consensus 147 ~a--~~~DLVIaNT~v~g----~wl~~l~~~~~~~~~~pVIWWIHE~r 188 (282)
.+ ..+|+||+.|+--. .++.++.+.. ....|--+..+.++-
T Consensus 177 ~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~-~~~~p~e~lLVlda~ 223 (429)
T TIGR01425 177 KFKKENFDIIIVDTSGRHKQEDSLFEEMLQVA-EAIQPDNIIFVMDGS 223 (429)
T ss_pred HHHhCCCCEEEEECCCCCcchHHHHHHHHHHh-hhcCCcEEEEEeccc
Confidence 33 36999999999654 3444443221 222334566777654
No 241
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=47.14 E-value=79 Score=30.57 Aligned_cols=59 Identities=22% Similarity=0.473 Sum_probs=42.6
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
+|+|++| |+-..-+|+|..|++.|.+|.++..... ....++...+.+.+.++||.+...
T Consensus 170 ~~~vvVi-------GgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~ 231 (461)
T TIGR01350 170 PESLVII-------GGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTN 231 (461)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 5677777 3445678999999999999998874321 133456566778888889988755
No 242
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=47.02 E-value=1.4e+02 Score=29.32 Aligned_cols=82 Identities=17% Similarity=0.142 Sum_probs=52.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC------------CchhhhhhhHHHHHHcCCceeeh
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS------------EEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~------------~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
..+|+|++|. |+| .=++.|..|.+.|++|.++-....+ ...++.....+.+.+.|+.+...
T Consensus 131 ~~~~~V~IIG------~G~-aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~ 203 (449)
T TIGR01316 131 STHKKVAVIG------AGP-AGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMN 203 (449)
T ss_pred CCCCEEEEEC------cCH-HHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeC
Confidence 4689999996 444 4458899999999999998743211 12234344445677778887765
Q ss_pred hch-h--HHH-HhhccCEEEEechh
Q 023401 140 KGQ-E--TIN-TALKADLIVLNTAV 160 (282)
Q Consensus 140 k~~-~--~i~-~a~~~DLVIaNT~v 160 (282)
... + .+. ....+|.||+-|-+
T Consensus 204 ~~v~~~v~~~~~~~~yd~viiAtGa 228 (449)
T TIGR01316 204 FLVGKTATLEELFSQYDAVFIGTGA 228 (449)
T ss_pred CccCCcCCHHHHHhhCCEEEEeCCC
Confidence 211 1 111 22469999999986
No 243
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=46.80 E-value=80 Score=25.85 Aligned_cols=59 Identities=14% Similarity=0.016 Sum_probs=32.3
Q ss_pred hhhhhhHHHHHHcCCceeehhchhHHH--HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEE
Q 023401 120 EVIYSLEHKMWDRGVQVISAKGQETIN--TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWW 183 (282)
Q Consensus 120 ~v~~~L~~kll~rgI~v~~~k~~~~i~--~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWW 183 (282)
.+.+....-+.+.|+..-..+ -+++. .+.++|+||+=|-.....+. ..+|...+++..|
T Consensus 45 ~~~~~a~~~l~~~Gid~s~h~-s~~l~~~~~~~aDlIi~m~~~~~~~~~----~~~~~~~~~v~~~ 105 (141)
T cd00115 45 RPDPRAIAVLAEHGIDISGHR-ARQLTEDDFDEFDLIITMDESNLAELL----EPPPGGRAKVELL 105 (141)
T ss_pred CCCHHHHHHHHHcCCCcccCe-eeeCCHHHHHhCCEEEEECHHHHHHHH----hcCCCCcceEEeH
Confidence 444445566666799873221 12221 46789999987665444443 2223334466666
No 244
>PRK12742 oxidoreductase; Provisional
Probab=46.77 E-value=1.3e+02 Score=25.65 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=24.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
+++|+||+..- +|+ +=.++++.|.+.|.+|.++..
T Consensus 4 ~~~k~vlItGa----sgg--IG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 4 FTGKKVLVLGG----SRG--IGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CCCCEEEEECC----CCh--HHHHHHHHHHHCCCEEEEecC
Confidence 56887776532 232 567789999999999876653
No 245
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=46.37 E-value=1.5e+02 Score=29.84 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=52.7
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe-ccCCCCchhhhhhhHHHHHHc---CCceeehhchhHHH
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSEEDEVIYSLEHKMWDR---GVQVISAKGQETIN 146 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~-~~~G~~~~~v~~~L~~kll~r---gI~v~~~k~~~~i~ 146 (282)
+.+||++.+.. .|-.+..+++.|.+.|..+.++. +.+.+..++ +...+++.+. +..++.+.....+.
T Consensus 309 ~l~Gkrvai~~-------~~~~~~~l~~~l~elGm~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~vv~~~d~~~l~ 379 (461)
T TIGR02931 309 FLADKRVAIYG-------NPDLVIGLAEFCLDLEMKPVLLLLGDDNSGYVD--DPRIKALQENVDYDMEIVTNADFWELE 379 (461)
T ss_pred HhCCCeEEEEe-------CHHHHHHHHHHHHHCCCEEEEEEECCCCcccch--hHHHHHHHhhCCCCceEEeCCCHHHHH
Confidence 57899997765 46788999999999999998765 322211111 1123333332 45566555555554
Q ss_pred -Hh----hccCEEEEechhchHHHH
Q 023401 147 -TA----LKADLIVLNTAVAGKWLD 166 (282)
Q Consensus 147 -~a----~~~DLVIaNT~v~g~wl~ 166 (282)
.+ .++|++|.|+- ++++.
T Consensus 380 ~~i~~~~~~~Dliig~s~--~~~~a 402 (461)
T TIGR02931 380 SRIKNQGLELDLILGHSK--GRFIS 402 (461)
T ss_pred HHHHhcCCCCCEEEECcc--hHHHH
Confidence 22 36999999996 45444
No 246
>PRK07478 short chain dehydrogenase; Provisional
Probab=46.26 E-value=1.3e+02 Score=26.17 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=43.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhH---
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQET--- 144 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~----~~k~~~~--- 144 (282)
+++|++|+.. -+|+ +=.++++.|.+.|++|.++... .+. ...+.+++.+.|..+. +-....+
T Consensus 4 ~~~k~~lItG----as~g--iG~~ia~~l~~~G~~v~~~~r~-~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (254)
T PRK07478 4 LNGKVAIITG----ASSG--IGRAAAKLFAREGAKVVVGARR-QAE----LDQLVAEIRAEGGEAVALAGDVRDEAYAKA 72 (254)
T ss_pred CCCCEEEEeC----CCCh--HHHHHHHHHHHCCCEEEEEeCC-HHH----HHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 4677666542 2232 5678899999999998777633 321 1223455555443322 1111222
Q ss_pred -HH----HhhccCEEEEechhc
Q 023401 145 -IN----TALKADLIVLNTAVA 161 (282)
Q Consensus 145 -i~----~a~~~DLVIaNT~v~ 161 (282)
++ ....+|.+|.|....
T Consensus 73 ~~~~~~~~~~~id~li~~ag~~ 94 (254)
T PRK07478 73 LVALAVERFGGLDIAFNNAGTL 94 (254)
T ss_pred HHHHHHHhcCCCCEEEECCCCC
Confidence 22 234689999998764
No 247
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=46.23 E-value=1.3e+02 Score=28.92 Aligned_cols=80 Identities=10% Similarity=0.023 Sum_probs=47.4
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhc
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~ 150 (282)
-.+|++|.+|++ .++ +.-.++..+...|.+|.+.+-.+=...+++....++...+.|..+...... +...+
T Consensus 144 ~l~g~kva~vGD-~~~-----v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~---~a~~~ 214 (302)
T PRK14805 144 DVSKVKLAYVGD-GNN-----VTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI---EAIEG 214 (302)
T ss_pred CcCCcEEEEEcC-CCc-----cHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH---HHHCC
Confidence 368999999997 343 455666666777999999983321122333222122233457665322112 34678
Q ss_pred cCEEEEech
Q 023401 151 ADLIVLNTA 159 (282)
Q Consensus 151 ~DLVIaNT~ 159 (282)
+|.|+.-+.
T Consensus 215 aDvvy~~~w 223 (302)
T PRK14805 215 HDAIYTDTW 223 (302)
T ss_pred CCEEEeece
Confidence 999998663
No 248
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=46.09 E-value=63 Score=25.32 Aligned_cols=39 Identities=26% Similarity=0.195 Sum_probs=30.7
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
++.-+++||+ +|-.--+.+.++..|+.|.+++.+++...
T Consensus 46 ~~d~~I~iS~----sG~t~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 46 EDTLVIAISQ----SGETADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CCcEEEEEeC----CcCCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 3445666666 66666899999999999999999996644
No 249
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=45.70 E-value=36 Score=30.91 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=31.4
Q ss_pred ccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 023401 68 PLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (282)
Q Consensus 68 ~~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (282)
-.+=++||..++| .|+=-||+ -+...|+.||+.|+.=+....-+|-
T Consensus 77 vVGDV~gk~~IIv-DDiIdtg~--Tl~~aA~~Lk~~GA~~V~~~aTHgv 122 (184)
T PF14572_consen 77 VVGDVKGKICIIV-DDIIDTGG--TLIKAAELLKERGAKKVYACATHGV 122 (184)
T ss_dssp EES--TTSEEEEE-EEEESSTH--HHHHHHHHHHHTTESEEEEEEEEE-
T ss_pred EEEEccCCeEeee-cccccchH--HHHHHHHHHHHcCCCEEEEEEeCcc
Confidence 3467899966655 56666666 5789999999999985555555563
No 250
>PRK14727 putative mercuric reductase; Provisional
Probab=45.67 E-value=81 Score=31.20 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=42.5
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC--CCCchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK--PSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~--G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
.|++++| |+-..-+|+|..|.+.|.+|.++.... +..+.++...+++.+.++||.+...
T Consensus 188 ~k~vvVI-------GgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~ 248 (479)
T PRK14727 188 PASLTVI-------GSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNN 248 (479)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcC
Confidence 3667777 444578999999999999999997431 1123455566777888889998754
No 251
>PRK13748 putative mercuric reductase; Provisional
Probab=45.66 E-value=80 Score=31.52 Aligned_cols=59 Identities=17% Similarity=0.331 Sum_probs=43.3
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC--CCchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP--SEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G--~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
+|++++| |+-..-+|+|..|.+.|.+|.++....- ..+.++...+++.+.++||.+...
T Consensus 270 ~~~vvVi-------GgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~ 330 (561)
T PRK13748 270 PERLAVI-------GSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEH 330 (561)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcC
Confidence 4667666 4445789999999999999999974211 124456667788888899998754
No 252
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=45.52 E-value=80 Score=28.62 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=40.1
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe--ccCCCCchhhhhhhHHHHHHcCCceeeh
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT--IQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~--~~~G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
+-+|++|++| .|.=.||+ -+.+.++.|++.|.+|+-+. ...+. +-.+++.+.|+++..-
T Consensus 115 ~~~g~~VlIV-DDViTTG~--Ti~~a~~~L~~~G~~vv~v~vlvdr~~-------~~~~~l~~~gi~v~sl 175 (206)
T PRK13809 115 FTPGQTCLVI-NDMVSSGK--SIIETAVALEEEGLVVREALVFLDRQK-------GACQPLGPQGIKLSSV 175 (206)
T ss_pred cCCCCEEEEE-EeccccCH--HHHHHHHHHHHCCCEEEEEEEEEECcc-------cHHHHHHhcCCCEEEE
Confidence 4588888777 56667787 67899999999998854333 22221 1145666778888754
No 253
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.41 E-value=1.6e+02 Score=25.65 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=43.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee-h-hchhHHH---
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-A-KGQETIN--- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~-~-k~~~~i~--- 146 (282)
++||++|+++= .+. +=.++|+.|.+.|++|.++..+.. ...+++.+.++..+. | ...+++.
T Consensus 5 l~~k~~lItGa-s~g-----IG~~~a~~l~~~G~~v~~~~~~~~--------~~~~~l~~~~~~~~~~Dl~~~~~~~~~~ 70 (255)
T PRK06463 5 FKGKVALITGG-TRG-----IGRAIAEAFLREGAKVAVLYNSAE--------NEAKELREKGVFTIKCDVGNRDQVKKSK 70 (255)
T ss_pred cCCCEEEEeCC-CCh-----HHHHHHHHHHHCCCEEEEEeCCcH--------HHHHHHHhCCCeEEEecCCCHHHHHHHH
Confidence 46777666542 222 446789999999999887653322 123444444554442 1 2222222
Q ss_pred -----HhhccCEEEEechhc
Q 023401 147 -----TALKADLIVLNTAVA 161 (282)
Q Consensus 147 -----~a~~~DLVIaNT~v~ 161 (282)
.....|.||.|..+.
T Consensus 71 ~~~~~~~~~id~li~~ag~~ 90 (255)
T PRK06463 71 EVVEKEFGRVDVLVNNAGIM 90 (255)
T ss_pred HHHHHHcCCCCEEEECCCcC
Confidence 124689999998653
No 254
>PRK05866 short chain dehydrogenase; Provisional
Probab=45.40 E-value=1.5e+02 Score=27.06 Aligned_cols=37 Identities=16% Similarity=0.060 Sum_probs=26.8
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
=|++|+||+++ |+.-+=.++|+.|.+.|++|.++..+
T Consensus 37 ~~~~k~vlItG------asggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 37 DLTGKRILLTG------ASSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CCCCCEEEEeC------CCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 35778877654 22346678999999999998877643
No 255
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=45.05 E-value=81 Score=31.79 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=48.3
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH--cCCceeehhchhHHH
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQVISAKGQETIN 146 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~--rgI~v~~~k~~~~i~ 146 (282)
..+.+||++.+.... .-|..+.. .|++.|.+|+....+.+. .++. ++.+.. .+..++++.....+.
T Consensus 330 ~~~L~GKrv~i~~g~----~~~~~~~~---~l~ELGmevv~~g~~~~~-~~~~----~~~~~~~~~~~~i~~~~d~~el~ 397 (466)
T TIGR01282 330 RPRLEGKTVMLYVGG----LRPRHVIG---AFEDLGMEVIGTGYEFAH-NDDY----ERTTKYMKDGTLIYDDVTHYEFE 397 (466)
T ss_pred HHhcCCCEEEEECCC----CcHHHHHH---HHHHCCCEEEEEeeecCC-HHHH----HHHHHhcCCCeEEeeCCCHHHHH
Confidence 457899999887521 13444444 588999999866554332 1122 222222 255555553333332
Q ss_pred ---HhhccCEEEEechhchHHHH
Q 023401 147 ---TALKADLIVLNTAVAGKWLD 166 (282)
Q Consensus 147 ---~a~~~DLVIaNT~v~g~wl~ 166 (282)
...++|++|.|+- ++++.
T Consensus 398 ~~i~~~~pDl~ig~~~--~~~~a 418 (466)
T TIGR01282 398 EFVEKLKPDLVGSGIK--EKYVF 418 (466)
T ss_pred HHHHHhCCCEEEecCC--cccee
Confidence 3458999999985 44443
No 256
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=44.62 E-value=5.5 Score=39.75 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=18.9
Q ss_pred ccccEEEEEeccCCCC---CchHHHHH
Q 023401 72 MKSKLVLLVSHELSLS---GGPLLLME 95 (282)
Q Consensus 72 ~~~KkILLISHELs~T---GAPLlLle 95 (282)
.-.|+|+||||||+-+ |.-|.+|+
T Consensus 213 ~l~KTIvFitHDLdEAlriG~rIaimk 239 (386)
T COG4175 213 KLKKTIVFITHDLDEALRIGDRIAIMK 239 (386)
T ss_pred HhCCeEEEEecCHHHHHhccceEEEec
Confidence 3579999999999966 77766664
No 257
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=44.44 E-value=65 Score=30.30 Aligned_cols=41 Identities=27% Similarity=0.466 Sum_probs=30.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
++||+||+| .|.=.||+ -+.+.++.|++.|...+.+..-+|
T Consensus 202 v~Gk~VlIV-DDIi~TG~--Tl~~aa~~Lk~~GA~~V~~~~~H~ 242 (285)
T PRK00934 202 VKGKDVLIV-DDIISTGG--TMATAIKILKEQGAKKVYVACVHP 242 (285)
T ss_pred cCCCEEEEE-cCccccHH--HHHHHHHHHHHCCCCEEEEEEEee
Confidence 689987766 67777888 577999999999986554443334
No 258
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=44.33 E-value=77 Score=28.12 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCC-CchhhhhhhHHHHHHc-CCceeehhchhHHH---H--hhccCEEEEechhch--
Q 023401 92 LLMELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDR-GVQVISAKGQETIN---T--ALKADLIVLNTAVAG-- 162 (282)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~-~~~~v~~~L~~kll~r-gI~v~~~k~~~~i~---~--a~~~DLVIaNT~v~g-- 162 (282)
=..++|+.+.+.|.+-..++.-.+. ........+.+++.+. ++|+.-.-+.++++ . ...+|.|++||..--
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~ 110 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALENP 110 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCH
Confidence 4567899999999986666633232 2333444566666664 78888765555543 1 235999999998642
Q ss_pred HHHHHHh
Q 023401 163 KWLDAVL 169 (282)
Q Consensus 163 ~wl~~l~ 169 (282)
.++.++.
T Consensus 111 ~~~~~~~ 117 (232)
T TIGR03572 111 DLIEEAA 117 (232)
T ss_pred HHHHHHH
Confidence 3455554
No 259
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=44.21 E-value=1.3e+02 Score=29.43 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=49.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhcc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~ 151 (282)
.+|++|.+|++-.+ +..-.+++++. ..|.++.+.+-++=...++++...++...+.|..+..... .-+...++
T Consensus 154 l~g~~ia~vGD~~~--~v~~Sl~~~~~---~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d--~~ea~~~a 226 (336)
T PRK03515 154 FNEMTLAYAGDARN--NMGNSLLEAAA---LTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTED--IAEGVKGA 226 (336)
T ss_pred cCCCEEEEeCCCcC--cHHHHHHHHHH---HcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcC--HHHHhCCC
Confidence 67899999996324 34445555544 4599999988332112344544444555556755432111 12356789
Q ss_pred CEEEEechhc
Q 023401 152 DLIVLNTAVA 161 (282)
Q Consensus 152 DLVIaNT~v~ 161 (282)
|.|++.+-.+
T Consensus 227 Dvvytd~W~s 236 (336)
T PRK03515 227 DFIYTDVWVS 236 (336)
T ss_pred CEEEecCccc
Confidence 9999987654
No 260
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.10 E-value=1.2e+02 Score=29.66 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH--cCCceeehhchhHHHHhhccCEEEEechhc--hHHHHHHh
Q 023401 94 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQVISAKGQETINTALKADLIVLNTAVA--GKWLDAVL 169 (282)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~--rgI~v~~~k~~~~i~~a~~~DLVIaNT~v~--g~wl~~l~ 169 (282)
|.+|++|++.|++|...=.+.. . ...+++.+ .|+++....+.. ....++|+||...++. .+.+.+..
T Consensus 19 ~s~a~~L~~~G~~v~~~D~~~~---~----~~~~~l~~~~~g~~~~~~~~~~--~~~~~~d~vV~sp~i~~~~p~~~~a~ 89 (448)
T PRK03803 19 LSVVRFLARQGIPFAVMDSREQ---P----PGLDTLAREFPDVELRCGGFDC--ELLVQASEIIISPGLALDTPALRAAA 89 (448)
T ss_pred HHHHHHHHhCCCeEEEEeCCCC---c----hhHHHHHhhcCCcEEEeCCCCh--HHhcCCCEEEECCCCCCCCHHHHHHH
Confidence 4599999999998765332211 1 12345555 388887532221 1235799999999885 45566554
Q ss_pred hccC
Q 023401 170 KEDV 173 (282)
Q Consensus 170 ~~~~ 173 (282)
+...
T Consensus 90 ~~~i 93 (448)
T PRK03803 90 AMGI 93 (448)
T ss_pred HCCC
Confidence 3333
No 261
>PRK12744 short chain dehydrogenase; Provisional
Probab=44.05 E-value=2.2e+02 Score=24.81 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=44.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~--~~k~~~~i~- 146 (282)
+++|++|+++ -+|+ +=.++|+.|.+.|+.|+++..+.+. ..+-...+.+++...+..+ + +-...+++.
T Consensus 6 l~~k~vlItG----a~~g--IG~~~a~~l~~~G~~vv~i~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 78 (257)
T PRK12744 6 LKGKVVLIAG----GAKN--LGGLIARDLAAQGAKAVAIHYNSAA-SKADAEETVAAVKAAGAKAVAFQADLTTAAAVEK 78 (257)
T ss_pred CCCcEEEEEC----CCch--HHHHHHHHHHHCCCcEEEEecCCcc-chHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHH
Confidence 4678777664 2222 5668999999999998877644322 1122223334444444332 1 112222332
Q ss_pred -------HhhccCEEEEechh
Q 023401 147 -------TALKADLIVLNTAV 160 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v 160 (282)
....+|.+|.|...
T Consensus 79 ~~~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 79 LFDDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred HHHHHHHhhCCCCEEEECCcc
Confidence 12468999888754
No 262
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=44.00 E-value=1.1e+02 Score=30.74 Aligned_cols=79 Identities=22% Similarity=0.345 Sum_probs=51.7
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhh----HHHHHHcCCceeehhchhHHHH
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL----EHKMWDRGVQVISAKGQETINT 147 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L----~~kll~rgI~v~~~k~~~~i~~ 147 (282)
++||+||+| .|.=.||+ -|-++++.|++.|...+-+..--||--.+-.|++ .+++.... +..+++..
T Consensus 336 ~~gk~v~lv-DD~ittG~--T~~~~~~~l~~~ga~~v~~~~~spp~~~pc~yg~d~~~~~el~~~~------~~~~~i~~ 406 (442)
T TIGR01134 336 FRGKRVVLV-DDSIVRGT--TSRQIVKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPTREELIANG------RTVEEIAK 406 (442)
T ss_pred CCCCEEEEE-eccccccH--HHHHHHHHHHHcCCcEEEEEEccCCccCCcccccCCCCHHHHhhcC------CCHHHHHH
Confidence 489999887 66667899 5679999999999875555544454222222333 33443322 44666766
Q ss_pred hhccCEEEEech
Q 023401 148 ALKADLIVLNTA 159 (282)
Q Consensus 148 a~~~DLVIaNT~ 159 (282)
...+|-+-..|+
T Consensus 407 ~~~~~~l~~~~~ 418 (442)
T TIGR01134 407 EIGADSLAYLSL 418 (442)
T ss_pred HhCCCEEEEecH
Confidence 777888888877
No 263
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=43.82 E-value=71 Score=27.66 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc--hhHHH-HhhccCEEEEechhc--------h
Q 023401 94 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--QETIN-TALKADLIVLNTAVA--------G 162 (282)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~--~~~i~-~a~~~DLVIaNT~v~--------g 162 (282)
-.+++.|.+.|++|.+++.+.. ....+++.+.|+.++.... .+++. .+..+|.||.+|... -
T Consensus 12 ~~v~~~L~~~~~~V~~l~R~~~-------~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~ 84 (233)
T PF05368_consen 12 RSVVRALLSAGFSVRALVRDPS-------SDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQK 84 (233)
T ss_dssp HHHHHHHHHTTGCEEEEESSSH-------HHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEeccc-------hhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhh
Confidence 3566777779999999995532 1345777888999986643 34454 577899999999832 3
Q ss_pred HHHHHHhhccC
Q 023401 163 KWLDAVLKEDV 173 (282)
Q Consensus 163 ~wl~~l~~~~~ 173 (282)
..+++..+..+
T Consensus 85 ~li~Aa~~agV 95 (233)
T PF05368_consen 85 NLIDAAKAAGV 95 (233)
T ss_dssp HHHHHHHHHT-
T ss_pred hHHHhhhcccc
Confidence 45555555555
No 264
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=43.79 E-value=97 Score=30.22 Aligned_cols=80 Identities=25% Similarity=0.414 Sum_probs=52.5
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeehhchhHH-----
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISAKGQETI----- 145 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~~~v~~~L~~kll~rgI~v~~~k~~~~i----- 145 (282)
+|++++| |+-..-+|+|..|.+.|.+|.++...+-. .+.++...+.+.+.++|+++........+
T Consensus 166 ~~~vvVI-------GgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~ 238 (446)
T TIGR01424 166 PKSILIL-------GGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDD 238 (446)
T ss_pred CCeEEEE-------CCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC
Confidence 4666666 33346799999999999999999843321 34566666788888889988855211111
Q ss_pred ----H----HhhccCEEEEechh
Q 023401 146 ----N----TALKADLIVLNTAV 160 (282)
Q Consensus 146 ----~----~a~~~DLVIaNT~v 160 (282)
. ....+|.||..|-.
T Consensus 239 ~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 239 GLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred eEEEEEcCCcEeecCEEEEeeCC
Confidence 1 12358888876653
No 265
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=43.76 E-value=1.6e+02 Score=25.27 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=43.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--ee-h-hchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--IS-A-KGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~~-~-k~~~~i~- 146 (282)
|++|++|+.. -+| -+=.++++.|.+.|++|.++. +..+.. ..+.+++.+.+..+ +. | .....+.
T Consensus 5 ~~~~~vlItG----asg--~iG~~la~~l~~~G~~v~~~~-r~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 73 (262)
T PRK13394 5 LNGKTAVVTG----AAS--GIGKEIALELARAGAAVAIAD-LNQDGA----NAVADEINKAGGKAIGVAMDVTNEDAVNA 73 (262)
T ss_pred CCCCEEEEEC----CCC--hHHHHHHHHHHHCCCeEEEEe-CChHHH----HHHHHHHHhcCceEEEEECCCCCHHHHHH
Confidence 5678776652 233 256688999999999987665 333211 12344554444333 21 1 2222222
Q ss_pred -------HhhccCEEEEechh
Q 023401 147 -------TALKADLIVLNTAV 160 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v 160 (282)
.....|.||-|...
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 74 GIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHHcCCCCEEEECCcc
Confidence 12348999998865
No 266
>PLN02546 glutathione reductase
Probab=43.33 E-value=87 Score=32.32 Aligned_cols=60 Identities=25% Similarity=0.370 Sum_probs=44.9
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
.+|+|++| |+-..-+|+|..|.+.|.+|.++...+. ..+.++...+++.|.++||.+...
T Consensus 251 ~~k~V~VI-------GgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~ 313 (558)
T PLN02546 251 KPEKIAIV-------GGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTE 313 (558)
T ss_pred cCCeEEEE-------CCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeC
Confidence 46788887 4445789999999999999999984432 134555556788888899998754
No 267
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.31 E-value=1e+02 Score=26.43 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=24.7
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
+++|++++++ .+| -+=..+++.|.+.|++|.++..
T Consensus 5 ~~~~~vlVtG----~sg--~iG~~l~~~L~~~G~~Vi~~~r 39 (239)
T PRK07666 5 LQGKNALITG----AGR--GIGRAVAIALAKEGVNVGLLAR 39 (239)
T ss_pred CCCCEEEEEc----CCc--hHHHHHHHHHHHCCCEEEEEeC
Confidence 3567776654 233 3667889999999998877663
No 268
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=43.27 E-value=81 Score=30.88 Aligned_cols=79 Identities=20% Similarity=0.266 Sum_probs=46.9
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHcC-Cce-eehhchhHHH
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG-VQV-ISAKGQETIN 146 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~~~v~~~L~~kll~rg-I~v-~~~k~~~~i~ 146 (282)
.+..||+|.+.+ |+ -....+++.|. +.|.+|+.+...-+. .+ .+++.+.+.. .++ +.+.....+.
T Consensus 284 ~~l~Gk~vai~~------~~-~~~~~la~~l~~elG~~v~~i~~~~~~-~~----~~~~~~~~~~~~~~~v~d~~~~e~~ 351 (415)
T cd01977 284 ERLKGKKVCIWT------GG-PKLWHWTKVIEDELGMQVVAMSSKFGH-QE----DFEKVIARGGEGTIYIDDPNELEFF 351 (415)
T ss_pred HHcCCCEEEEEC------CC-chHHHHHHHHHHhcCCEEEEEEEEecc-HH----HHHHHHHhcCCceEEEeCCCHHHHH
Confidence 467899998742 22 34688998885 899999887643221 11 1233344332 233 3333333322
Q ss_pred ---HhhccCEEEEechh
Q 023401 147 ---TALKADLIVLNTAV 160 (282)
Q Consensus 147 ---~a~~~DLVIaNT~v 160 (282)
...++|+||.|+-.
T Consensus 352 ~~~~~~~pdliig~s~~ 368 (415)
T cd01977 352 EILEMLKPDIILTGPRV 368 (415)
T ss_pred HHHHhcCCCEEEecCcc
Confidence 35579999999974
No 269
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=43.00 E-value=34 Score=28.15 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee
Q 023401 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS 138 (282)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~ 138 (282)
.-+++..-++.+++.+++. + +..++.++.+.|.+.||++|=
T Consensus 51 ~~~l~~~a~~~~idlvvvG---P--E~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 51 PEELADFAKENKIDLVVVG---P--EAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp HHHHHHHHHHTTESEEEES---S--HHHHHTTHHHHHHHTT-CEES
T ss_pred HHHHHHHHHHcCCCEEEEC---C--hHHHHHHHHHHHHHCCCcEEC
Confidence 4467777889999998886 4 778899999999999999993
No 270
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=42.95 E-value=1.3e+02 Score=25.26 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=42.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (282)
|++|+||+++. +|. +=.++++.|.+.|++|.++. +..... ..+.+++...+.++. +-...+++.
T Consensus 3 ~~~~~ilItGa----sg~--iG~~l~~~l~~~g~~v~~~~-r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (246)
T PRK05653 3 LQGKTALVTGA----SRG--IGRAIALRLAADGAKVVIYD-SNEEAA----EALAAELRAAGGEARVLVFDVSDEAAVRA 71 (246)
T ss_pred CCCCEEEEECC----CcH--HHHHHHHHHHHCCCEEEEEe-CChhHH----HHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 45678888764 222 44678888889999975554 433211 123444444443322 112222222
Q ss_pred -------HhhccCEEEEechh
Q 023401 147 -------TALKADLIVLNTAV 160 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v 160 (282)
....+|.||.|...
T Consensus 72 ~~~~~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 72 LIEAAVEAFGALDILVNNAGI 92 (246)
T ss_pred HHHHHHHHhCCCCEEEECCCc
Confidence 23457999998754
No 271
>PTZ00052 thioredoxin reductase; Provisional
Probab=42.90 E-value=91 Score=31.25 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=39.0
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccC--CCCchhhhhhhHHHHHHcCCceeeh
Q 023401 88 GGPLLLMELAFLLRGVGTKVNWITIQK--PSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~--G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
|+-..-+|+|..|.+.|.+|.++.... +..+.++...+.+.|.++||.++..
T Consensus 189 GgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~ 242 (499)
T PTZ00052 189 GASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEG 242 (499)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcC
Confidence 555678999999999999999997421 1134456667788888889988754
No 272
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=42.80 E-value=1.2e+02 Score=28.93 Aligned_cols=40 Identities=30% Similarity=0.389 Sum_probs=31.7
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHH--HhCCCeEEEEeccCC
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLL--RGVGTKVNWITIQKP 115 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~L--kq~G~~V~vL~~~~G 115 (282)
|.+++|+=.+ .||=-++++++|+.| .+.|..+..++..+.
T Consensus 1 K~v~~I~G~a-GTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 1 KQVILITGGA-GTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred CeEEEEEecC-CcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 5677777655 479999999999999 777888888885544
No 273
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=42.72 E-value=1.3e+02 Score=32.17 Aligned_cols=161 Identities=11% Similarity=0.056 Sum_probs=85.0
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh---------------
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--------------- 140 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k--------------- 140 (282)
+|.++.=|.|.- +.--+|++.||+..-++.+.. =|| ++|.+.|.+.+-+-
T Consensus 228 kIfI~AGE~SGD---lhgA~Li~aLk~~~P~i~~~G-vGG-----------~~M~aaG~e~l~d~~eLsVmG~~EVL~~l 292 (608)
T PRK01021 228 SCFISAGEHSGD---TLGGNLLKEIKALYPDIHCFG-VGG-----------PQMRAEGFHPLFNMEEFQVSGFWEVLLAL 292 (608)
T ss_pred eEEEEeccccHH---HHHHHHHHHHHhcCCCcEEEE-Ecc-----------HHHHhCcCcccCChHHhhhhhHHHHHHHH
Confidence 577888777642 333477888998766655544 445 35666666655331
Q ss_pred ------chhHHH--HhhccCEEEE------echhchHHHHHHhhccCCCC--CCceEEEeeecccccccccccccccccc
Q 023401 141 ------GQETIN--TALKADLIVL------NTAVAGKWLDAVLKEDVPRV--LPNVLWWIHEMRGHYFKLDYVKHLPLVA 204 (282)
Q Consensus 141 ------~~~~i~--~a~~~DLVIa------NT~v~g~wl~~l~~~~~~~~--~~pVIWWIHE~r~~Yf~l~~vkhL~~v~ 204 (282)
..+..+ ...+.|+||. |-=+ ++.+++.. .+.|-+ .+|-||==.+-|..-. .++++|+...
T Consensus 293 ~~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrL-AK~lkk~G-i~ipviyYVsPqVWAWR~~Rikki-~k~vD~ll~I- 368 (608)
T PRK01021 293 FKLWYRYRKLYKTILKTNPRTVICIDFPDFHFLL-IKKLRKRG-YKGKIVHYVCPSIWAWRPKRKTIL-EKYLDLLLLI- 368 (608)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHH-HHHHHhcC-CCCCEEEEECccceeeCcchHHHH-HHHhhhheec-
Confidence 111111 2457999999 7764 45555441 112322 4466665566552211 2455663322
Q ss_pred cccccchhhHHHHHHhhhhhcCCCCCCeeEEEecCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEe
Q 023401 205 GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 276 (282)
Q Consensus 205 ~~~~dS~Ata~~w~~~~~~~l~Ikl~~~~vv~L~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~~ 276 (282)
=+.-.+|++ + .+++ ++.+-++-+.+++ ....++..|+++|+++|+-++|..
T Consensus 369 -----fPFE~~~y~----~-~gv~------v~yVGHPL~d~i~-----~~~~~~~~r~~lgl~~~~~iIaLL 419 (608)
T PRK01021 369 -----LPFEQNLFK----D-SPLR------TVYLGHPLVETIS-----SFSPNLSWKEQLHLPSDKPIVAAF 419 (608)
T ss_pred -----CccCHHHHH----h-cCCC------eEEECCcHHhhcc-----cCCCHHHHHHHcCCCCCCCEEEEE
Confidence 222234443 2 3444 3445555444422 112455668888887777776653
No 274
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.66 E-value=1.9e+02 Score=25.22 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=24.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
+++|+||+.. .+.. .=+=..+|+.|.+.|++|.++..
T Consensus 3 l~~k~vlItG--as~~--~giG~~la~~l~~~G~~vi~~~r 39 (256)
T PRK12748 3 LMKKIALVTG--ASRL--NGIGAAVCRRLAAKGIDIFFTYW 39 (256)
T ss_pred CCCcEEEEeC--CCCC--CCHHHHHHHHHHHcCCcEEEEcC
Confidence 3677776654 2211 12556799999999998877653
No 275
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=42.57 E-value=2.5e+02 Score=28.35 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=63.1
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe-ccCCCCc--hhhhhhhHHHHHH---cCCceeehhchhH
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSEE--DEVIYSLEHKMWD---RGVQVISAKGQET 144 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~-~~~G~~~--~~v~~~L~~kll~---rgI~v~~~k~~~~ 144 (282)
+..||++.+.. .|-.+..+++.|.+.|..+.+.. +.+.+.. .+. .+++.+ .+..++.+.....
T Consensus 306 ~l~Gkrv~i~g-------~~~~~~~l~~fl~Elg~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~v~~~~d~~e 374 (457)
T TIGR02932 306 FFANKKVAIFG-------HPDLVIGLAEFCLEVELEPVLLLLGDDNSKYKKDPR----IEELKNKANFDIEVVWNADLWE 374 (457)
T ss_pred HHcCCeeEEEc-------CHHHHHHHHHHHHHCCCeEEEEEECCCCccccchHH----HHHHHhhcCCCceEEeCCCHHH
Confidence 46899997763 56789999999999999776665 3322211 222 233433 2455555544433
Q ss_pred HH-H---hhccCEEEEechhchHHHHHHhhccCCCC--CCceEEEeeeccccccc
Q 023401 145 IN-T---ALKADLIVLNTAVAGKWLDAVLKEDVPRV--LPNVLWWIHEMRGHYFK 193 (282)
Q Consensus 145 i~-~---a~~~DLVIaNT~v~g~wl~~l~~~~~~~~--~~pVIWWIHE~r~~Yf~ 193 (282)
+. . ..++|++|.|+- ++++.+= -++|.. ..|+.-.++..++.|..
T Consensus 375 l~~~l~~~~~~dllig~s~--~~~~A~k--lgip~~~~g~Pv~Dr~~~~~~~~~G 425 (457)
T TIGR02932 375 LEKRIKAKLDIDLIMGHSK--GRYVAID--ANIPMVRVGFPTFDRAGLYRKPVIG 425 (457)
T ss_pred HHHHHhhcCCCCEEEECCc--hHHHHHH--cCCCEEEecCCceeecccCCCCCCc
Confidence 33 1 347999999996 3444422 355544 23666666665545544
No 276
>PRK12828 short chain dehydrogenase; Provisional
Probab=42.37 E-value=1.3e+02 Score=25.34 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=42.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh--hchhHHH---
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--KGQETIN--- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~--k~~~~i~--- 146 (282)
+++|++|++.- ||+ +=..+++.|.+.|++|.++..+ .....+ ..+++...+..++.. ...+++.
T Consensus 5 ~~~k~vlItGa----tg~--iG~~la~~l~~~G~~v~~~~r~-~~~~~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (239)
T PRK12828 5 LQGKVVAITGG----FGG--LGRATAAWLAARGARVALIGRG-AAPLSQ----TLPGVPADALRIGGIDLVDPQAARRAV 73 (239)
T ss_pred CCCCEEEEECC----CCc--HhHHHHHHHHHCCCeEEEEeCC-hHhHHH----HHHHHhhcCceEEEeecCCHHHHHHHH
Confidence 56787777652 222 4467888888889997776643 221111 123333444444321 1222222
Q ss_pred -----HhhccCEEEEechh
Q 023401 147 -----TALKADLIVLNTAV 160 (282)
Q Consensus 147 -----~a~~~DLVIaNT~v 160 (282)
.....|.||-|...
T Consensus 74 ~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 74 DEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHHhCCcCEEEECCcc
Confidence 12368999988764
No 277
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=42.34 E-value=49 Score=35.94 Aligned_cols=82 Identities=29% Similarity=0.331 Sum_probs=56.1
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC----CCchhhhhhhHHHHHHcCCceeehhchhHHH--
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP----SEEDEVIYSLEHKMWDRGVQVISAKGQETIN-- 146 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G----~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~-- 146 (282)
.+|++++| |+-++-+|+|..|++.|.+|.++..... ..+.+....+.+++.++||++.......+|.
T Consensus 144 ~~k~vvVI-------GgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~ 216 (847)
T PRK14989 144 RSKRGAVV-------GGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQE 216 (847)
T ss_pred cCCeEEEE-------CCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEec
Confidence 46788887 4457889999999999999998874321 1234444567888888999988654222221
Q ss_pred -------------HhhccCEEEEechhc
Q 023401 147 -------------TALKADLIVLNTAVA 161 (282)
Q Consensus 147 -------------~a~~~DLVIaNT~v~ 161 (282)
....+|+||.-+-+-
T Consensus 217 ~~~~~~~v~~~dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 217 GVEARKTMRFADGSELEVDFIVFSTGIR 244 (847)
T ss_pred CCCceEEEEECCCCEEEcCEEEECCCcc
Confidence 124589999876543
No 278
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=42.26 E-value=80 Score=31.19 Aligned_cols=83 Identities=18% Similarity=0.142 Sum_probs=46.8
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH--cCCceeehhchhHHH
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQVISAKGQETIN 146 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~--rgI~v~~~k~~~~i~ 146 (282)
..+.+||++++.... .-|..+. ..|++.|.+|+.+..+-.. ++.. ++.+.. .+.-++.+.....+.
T Consensus 295 ~~~L~Gkrv~i~~g~----~~~~~~~---~~l~elGmevv~~g~~~~~-~~~~----~~~~~~~~~~~~i~~~~d~~e~~ 362 (421)
T cd01976 295 RPRLEGKTVMLYVGG----LRPRHYI---GAYEDLGMEVVGTGYEFAH-RDDY----ERTEVIPKEGTLLYDDVTHYELE 362 (421)
T ss_pred HHHcCCCEEEEECCC----CcHHHHH---HHHHHCCCEEEEEEeecCC-HHHH----hhHHhhcCCceEEEcCCCHHHHH
Confidence 467899999977521 1244444 5778999999987543221 1111 222222 233344443333332
Q ss_pred ---HhhccCEEEEechhchHHH
Q 023401 147 ---TALKADLIVLNTAVAGKWL 165 (282)
Q Consensus 147 ---~a~~~DLVIaNT~v~g~wl 165 (282)
...++|++|.|+- ++++
T Consensus 363 ~~i~~~~pDliig~~~--~~~~ 382 (421)
T cd01976 363 EFVKRLKPDLIGSGIK--EKYV 382 (421)
T ss_pred HHHHHhCCCEEEecCc--chhh
Confidence 2457999999997 4444
No 279
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=42.17 E-value=1.4e+02 Score=26.27 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=43.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (282)
+++|++|++.-- + -+=.++++.|.+.|++|+++. +..+ .. ..+.+++.+.|.++. +-...+++.
T Consensus 8 ~~~k~~lItGa~-~-----~iG~~ia~~l~~~G~~vv~~~-~~~~---~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 76 (265)
T PRK07097 8 LKGKIALITGAS-Y-----GIGFAIAKAYAKAGATIVFND-INQE---LV-DKGLAAYRELGIEAHGYVCDVTDEDGVQA 76 (265)
T ss_pred CCCCEEEEeCCC-c-----hHHHHHHHHHHHCCCeEEEEe-CCHH---HH-HHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 367766665322 2 234688999999999987764 3221 11 123344444443332 112222222
Q ss_pred -------HhhccCEEEEechhc
Q 023401 147 -------TALKADLIVLNTAVA 161 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v~ 161 (282)
....+|.+|.|....
T Consensus 77 ~~~~~~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 77 MVSQIEKEVGVIDILVNNAGII 98 (265)
T ss_pred HHHHHHHhCCCCCEEEECCCCC
Confidence 124589999998764
No 280
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=42.10 E-value=1.8e+02 Score=26.03 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=19.1
Q ss_pred hhccCEEEEechhc---hHHHHHHhhccCCCCCCceEEEe
Q 023401 148 ALKADLIVLNTAVA---GKWLDAVLKEDVPRVLPNVLWWI 184 (282)
Q Consensus 148 a~~~DLVIaNT~v~---g~wl~~l~~~~~~~~~~pVIWWI 184 (282)
..++|-||+.+... -..++++.+.++ |+|.+=
T Consensus 54 ~~~~DgiIi~~~~~~~~~~~~~~~~~~~i-----PvV~v~ 88 (298)
T cd06302 54 AQGVDAIAVVPNDPDALEPVLKKAREAGI-----KVVTHD 88 (298)
T ss_pred hcCCCEEEEecCCHHHHHHHHHHHHHCCC-----eEEEEc
Confidence 45789888876432 245555554444 666653
No 281
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=42.09 E-value=1.8e+02 Score=26.02 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=40.6
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCC--CeEEEEeccCCCCchhhhhhhHHHHHHcCCceee--hhc-------hh
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--AKG-------QE 143 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~G--~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~--~k~-------~~ 143 (282)
|-++|+|++ |. .+-.+...+.+.+ +++.++...+++. +..+...+.|||++. ... ..
T Consensus 3 ki~vl~sg~----gs--~~~~ll~~~~~~~~~~~I~~vvs~~~~~------~~~~~a~~~gIp~~~~~~~~~~~~~~~~~ 70 (200)
T PRK05647 3 RIVVLASGN----GS--NLQAIIDACAAGQLPAEIVAVISDRPDA------YGLERAEAAGIPTFVLDHKDFPSREAFDA 70 (200)
T ss_pred eEEEEEcCC----Ch--hHHHHHHHHHcCCCCcEEEEEEecCccc------hHHHHHHHcCCCEEEECccccCchhHhHH
Confidence 456777766 33 4456666777654 6666654443321 245667777999975 211 12
Q ss_pred HH-H--HhhccCEEEE
Q 023401 144 TI-N--TALKADLIVL 156 (282)
Q Consensus 144 ~i-~--~a~~~DLVIa 156 (282)
.+ + ...++|++|+
T Consensus 71 ~~~~~l~~~~~D~iv~ 86 (200)
T PRK05647 71 ALVEALDAYQPDLVVL 86 (200)
T ss_pred HHHHHHHHhCcCEEEh
Confidence 22 2 2467999986
No 282
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=41.93 E-value=38 Score=25.33 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh
Q 023401 95 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 95 eLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
.+++.|.+.|.++++...-++ +..+.|.++||.++..
T Consensus 44 ~~~~~l~~~~v~~li~~~iG~--------~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICGGIGE--------GAFRALKEAGIKVYQG 80 (94)
T ss_dssp HHHHHHHHTTESEEEESCSCH--------HHHHHHHHTTSEEEES
T ss_pred hHHHHHHHcCCCEEEEeCCCH--------HHHHHHHHCCCEEEEc
Confidence 456667777888877775543 5678999999999985
No 283
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=41.89 E-value=1.5e+02 Score=24.22 Aligned_cols=80 Identities=14% Similarity=0.043 Sum_probs=56.3
Q ss_pred cCCCccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchh
Q 023401 64 TKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE 143 (282)
Q Consensus 64 ~~~~~~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~ 143 (282)
-.|++.+|++|.-++|.|=-.=....|-.+.++.+.|.+.|..=..+-. |.+-+++-..+.+..-++++|++.-...-
T Consensus 32 e~~d~~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~--~~~~~~iP~~~i~~A~~~~lPli~ip~~~ 109 (123)
T PF07905_consen 32 EAPDPSDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKT--GRYLDEIPEEIIELADELGLPLIEIPWEV 109 (123)
T ss_pred ecCCHHHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEec--cCccccCCHHHHHHHHHcCCCEEEeCCCC
Confidence 3468999999998888763333333566899999999999887655542 33344666667788888899999765444
Q ss_pred HH
Q 023401 144 TI 145 (282)
Q Consensus 144 ~i 145 (282)
.+
T Consensus 110 ~f 111 (123)
T PF07905_consen 110 PF 111 (123)
T ss_pred CH
Confidence 33
No 284
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=41.83 E-value=1.3e+02 Score=30.82 Aligned_cols=83 Identities=10% Similarity=0.141 Sum_probs=48.0
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHH-HhCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhc--hhH
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLL-RGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKG--QET 144 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~L-kq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r--gI~v~~~k~--~~~ 144 (282)
.+..||++.++. .|-....+++.| ++.|.++++....-... .+ .+.+++... ++.+.+|.. .+.
T Consensus 301 ~~l~Gkrv~I~g-------d~~~a~~l~~~L~~ELGm~vv~~g~~~~~~-~~---~~~~~~~~~~~~~~i~~D~~ei~~~ 369 (513)
T CHL00076 301 QNLTGKKAVVFG-------DATHAASMTKILAREMGIRVSCAGTYCKHD-AE---WFKEQVQGFCDEILITDDHTEVGDM 369 (513)
T ss_pred cccCCCEEEEEc-------CchHHHHHHHHHHHhCCCEEEEecCcccch-hH---HHHHHHHHhccCcEEecCHHHHHHH
Confidence 688999996663 455677788888 69999997554322211 11 123344333 333334422 112
Q ss_pred HHHhhccCEEEEechhchHHHH
Q 023401 145 INTALKADLIVLNTAVAGKWLD 166 (282)
Q Consensus 145 i~~a~~~DLVIaNT~v~g~wl~ 166 (282)
|. ..++|+||.|+- .+++.
T Consensus 370 I~-~~~pdliiGs~~--er~ia 388 (513)
T CHL00076 370 IA-RVEPSAIFGTQM--ERHIG 388 (513)
T ss_pred HH-hcCCCEEEECch--hhHHH
Confidence 22 456999999983 44443
No 285
>PRK09134 short chain dehydrogenase; Provisional
Probab=41.71 E-value=1.9e+02 Score=25.23 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHHH----H----hhccCEEEEech
Q 023401 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETIN----T----ALKADLIVLNTA 159 (282)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~--~~k~~~~i~----~----a~~~DLVIaNT~ 159 (282)
+=.++++.|.+.|++|.++..+..+ . ...+.+++.+.+..+ + +-....++. . ....|.||.|..
T Consensus 21 iG~~la~~l~~~g~~v~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~iD~vi~~ag 96 (258)
T PRK09134 21 IGRAIALDLAAHGFDVAVHYNRSRD---E-AEALAAEIRALGRRAVALQADLADEAEVRALVARASAALGPITLLVNNAS 96 (258)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHH---H-HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 4468889999999999887654321 1 112344454444332 2 112222232 1 235899999986
Q ss_pred h
Q 023401 160 V 160 (282)
Q Consensus 160 v 160 (282)
.
T Consensus 97 ~ 97 (258)
T PRK09134 97 L 97 (258)
T ss_pred C
Confidence 4
No 286
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=41.68 E-value=1.6e+02 Score=28.56 Aligned_cols=82 Identities=12% Similarity=0.061 Sum_probs=46.5
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhcc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~ 151 (282)
.+|++|.+|++-.++ +.-.++..|...|.++.+.+-++=...+++....++...+.|..+...... -+...++
T Consensus 153 l~g~kia~vGD~~~~-----v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~--~ea~~~a 225 (332)
T PRK04284 153 YKDIKFTYVGDGRNN-----VANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDI--DEGVKGS 225 (332)
T ss_pred cCCcEEEEecCCCcc-----hHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCH--HHHhCCC
Confidence 689999999853333 344555555666999999883322122334322223333457544321111 1256789
Q ss_pred CEEEEechh
Q 023401 152 DLIVLNTAV 160 (282)
Q Consensus 152 DLVIaNT~v 160 (282)
|.|++.+..
T Consensus 226 Dvvy~~~w~ 234 (332)
T PRK04284 226 DVIYTDVWV 234 (332)
T ss_pred CEEEECCcc
Confidence 999997654
No 287
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=41.68 E-value=85 Score=27.56 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=27.5
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
...|++|++|+.. |+.=+=.++|+.|.+.|+.|.++..+
T Consensus 3 ~~~l~~k~vlItG------as~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 3 SNEMKGKTLVISG------GTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred ccccCCCEEEEeC------CCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4567888776653 33336678999999999998766533
No 288
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=41.59 E-value=1.8e+02 Score=28.95 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=55.7
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHh----CCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHH---
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRG----VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETI--- 145 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq----~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i--- 145 (282)
+++.|+|++-. .+|=.-.+..||..++. .|..|.+++..--- .+.+ ..|..-....|+|+........+
T Consensus 173 ~~~vi~lvGpt--GvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R-~aa~-eQL~~~a~~lgvpv~~~~~~~~l~~~ 248 (388)
T PRK12723 173 KKRVFILVGPT--GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR-IGAK-KQIQTYGDIMGIPVKAIESFKDLKEE 248 (388)
T ss_pred CCeEEEEECCC--CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc-HHHH-HHHHHHhhcCCcceEeeCcHHHHHHH
Confidence 45678888765 77999999999988874 47889999844211 1111 12333333358888755433333
Q ss_pred -HHhhccCEEEEechhc
Q 023401 146 -NTALKADLIVLNTAVA 161 (282)
Q Consensus 146 -~~a~~~DLVIaNT~v~ 161 (282)
..+.++|+||+.|+--
T Consensus 249 L~~~~~~DlVLIDTaGr 265 (388)
T PRK12723 249 ITQSKDFDLVLVDTIGK 265 (388)
T ss_pred HHHhCCCCEEEEcCCCC
Confidence 3457899999999954
No 289
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=41.26 E-value=69 Score=30.80 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=34.4
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (282)
=++||++|+|= |.=.||+ -|.+.|+.|++.|...+.+..-+|-
T Consensus 214 dv~Gr~viIVD-DIidTG~--Tl~~aa~~Lk~~GA~~V~~~~tHgl 256 (320)
T PRK02269 214 NVKGKKCILID-DMIDTAG--TICHAADALAEAGATEVYASCTHPV 256 (320)
T ss_pred ccCCCEEEEEe-eecCcHH--HHHHHHHHHHHCCCCEEEEEEECcc
Confidence 36899888774 5556777 4899999999999998888777774
No 290
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=41.24 E-value=1.2e+02 Score=29.13 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=49.9
Q ss_pred EEEEecc-CCCCCchHHHHHHHHHHHhCCCeEEEEe-ccCCCC----------chhhhhhhHHHHHHc--CCceeehhch
Q 023401 77 VLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSE----------EDEVIYSLEHKMWDR--GVQVISAKGQ 142 (282)
Q Consensus 77 ILLISHE-Ls~TGAPLlLleLA~~Lkq~G~~V~vL~-~~~G~~----------~~~v~~~L~~kll~r--gI~v~~~k~~ 142 (282)
|+-|..= .+.||-==+...|+++|++.|..+.+++ +.|+.. .+.-..+=|..|+.+ +++|+-.+..
T Consensus 30 VIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR 109 (311)
T TIGR00682 30 VVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGSKTKKYTLVGSKKHTASEVGDEPVLLAKYLHATVVASKDR 109 (311)
T ss_pred EEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCeeeeCCCCChHHcCcHHHHhhhhcCCcEEEeChH
Confidence 5555532 3566766677789999999999999999 555421 111112345566665 6787754322
Q ss_pred -hHHHHh---hccCEEEEechh
Q 023401 143 -ETINTA---LKADLIVLNTAV 160 (282)
Q Consensus 143 -~~i~~a---~~~DLVIaNT~v 160 (282)
++...+ .++|+||..=.-
T Consensus 110 ~~a~~~~~~~~~~dviilDDGf 131 (311)
T TIGR00682 110 KDAILLILEQLDPDVIILDDGL 131 (311)
T ss_pred HHHHHHHHhcCCCCEEEECCCC
Confidence 233322 247777775543
No 291
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=41.06 E-value=1.6e+02 Score=25.34 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=44.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc--eee--hhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VIS--AKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~--v~~--~k~~~~i~- 146 (282)
++||+||+++- +|+ +=..+|+.|.+.|+.|+++..... + .+.+++.+.+.. .+. -....++.
T Consensus 3 ~~~k~vlItGa----s~g--IG~~ia~~l~~~G~~vi~~~r~~~---~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 69 (248)
T TIGR01832 3 LEGKVALVTGA----NTG--LGQGIAVGLAEAGADIVGAGRSEP---S----ETQQQVEALGRRFLSLTADLSDIEAIKA 69 (248)
T ss_pred CCCCEEEEECC----Cch--HHHHHHHHHHHCCCEEEEEcCchH---H----HHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence 57898888753 222 566888999999999887763211 1 234455444422 221 12222222
Q ss_pred -------HhhccCEEEEechhc
Q 023401 147 -------TALKADLIVLNTAVA 161 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v~ 161 (282)
.....|.||.|....
T Consensus 70 ~~~~~~~~~~~~d~li~~ag~~ 91 (248)
T TIGR01832 70 LVDSAVEEFGHIDILVNNAGII 91 (248)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 124589999887653
No 292
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=41.02 E-value=93 Score=30.17 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=40.3
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~---~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
+|++++| |+-..-+|+|..|.+.|.+|.++...+.. .+.++...+++.+.++ |++...
T Consensus 169 ~k~v~VI-------GgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~ 229 (460)
T PRK06292 169 PKSLAVI-------GGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLG 229 (460)
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcC
Confidence 4555555 55567899999999999999998743321 2345656667777777 877643
No 293
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=40.80 E-value=1.5e+02 Score=28.31 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=45.8
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhc
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~ 150 (282)
-.+|++|.+|.+ .++ +.-.++..|...|.+|++.+-.+-...+++ ++....+.|.++..... .-+.+.+
T Consensus 149 ~l~gl~i~~vGd-~~~-----v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~---~~~~~~~~g~~~~~~~d--~~~a~~~ 217 (304)
T PRK00779 149 SLKGLKVAWVGD-GNN-----VANSLLLAAALLGFDLRVATPKGYEPDPEI---VEKIAKETGASIEVTHD--PKEAVKG 217 (304)
T ss_pred CcCCcEEEEEeC-CCc-----cHHHHHHHHHHcCCEEEEECCcccCCCHHH---HHHHHHHcCCeEEEEcC--HHHHhCC
Confidence 478999999998 343 455666667777999999883221111222 12223445755432111 1125678
Q ss_pred cCEEEEech
Q 023401 151 ADLIVLNTA 159 (282)
Q Consensus 151 ~DLVIaNT~ 159 (282)
+|.|+.-+.
T Consensus 218 aDvvy~~~w 226 (304)
T PRK00779 218 ADVVYTDVW 226 (304)
T ss_pred CCEEEecCc
Confidence 999998543
No 294
>PRK13530 arsenate reductase; Provisional
Probab=40.67 E-value=52 Score=27.42 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=39.8
Q ss_pred ccccEEEEEe-ccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHH--Hh
Q 023401 72 MKSKLVLLVS-HELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN--TA 148 (282)
Q Consensus 72 ~~~KkILLIS-HELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~--~a 148 (282)
|..|+||||. |+.-|+ |+. =.+++.+. |..+.+-+ .|-...++-+.-.+.|.+.|+++-..+ -+++. ..
T Consensus 1 ~~~~~vLFvC~~N~cRS--~mA-Eal~~~~~--~~~~~v~S--AG~~~~~~~~~a~~~l~e~Gi~~~~~~-s~~l~~~~~ 72 (133)
T PRK13530 1 MNKKTIYFLCTGNSCRS--QMA-EGWGKQYL--GDKWNVYS--AGIEAHGVNPNAIKAMKEVGIDISNQT-SDIIDNDIL 72 (133)
T ss_pred CCCCEEEEEcCCchhHH--HHH-HHHHHHhc--CCCEEEEC--CCCCCCCCCHHHHHHHHHcCCCcCCCc-cccCChhHh
Confidence 4568899998 555554 111 11112221 23344433 121112343444566677899874332 12232 35
Q ss_pred hccCEEEEec
Q 023401 149 LKADLIVLNT 158 (282)
Q Consensus 149 ~~~DLVIaNT 158 (282)
.++|+||+=+
T Consensus 73 ~~~D~ii~m~ 82 (133)
T PRK13530 73 NNADLVVTLC 82 (133)
T ss_pred ccCCEEEEec
Confidence 6899999754
No 295
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=40.60 E-value=52 Score=28.77 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=31.0
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCe-EEEEe
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTK-VNWIT 111 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~-V~vL~ 111 (282)
-.+||+||+| .|.-.||+ -|.+.++.|++.|.. |.+.+
T Consensus 94 ~v~gk~VLIV-DDIidTG~--Tl~~~~~~Lk~~Ga~~V~~av 132 (181)
T PRK09162 94 SLKGRTVLVV-DDILDEGH--TLAAIRDRCLEMGAAEVYSAV 132 (181)
T ss_pred CCCCCEEEEE-ccccCcHH--HHHHHHHHHHhCCCCEEEEEE
Confidence 4799999999 89999999 667999999999864 44444
No 296
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=40.48 E-value=1.5e+02 Score=29.63 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=43.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcC--Ccee--ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG--VQVI--SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rg--I~v~--~~k~~~~i~- 146 (282)
++||+|++.+ -+| -+=.++|+.|.+.|++|.++..+.. .+.+.+.+.+ +..+ +-...+++.
T Consensus 176 l~gK~VLITG----ASg--GIG~aLA~~La~~G~~Vi~l~r~~~--------~l~~~~~~~~~~v~~v~~Dvsd~~~v~~ 241 (406)
T PRK07424 176 LKGKTVAVTG----ASG--TLGQALLKELHQQGAKVVALTSNSD--------KITLEINGEDLPVKTLHWQVGQEAALAE 241 (406)
T ss_pred CCCCEEEEeC----CCC--HHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHHHhhcCCCeEEEEeeCCCHHHHHH
Confidence 4678776542 333 3667888999999999988764322 1222222222 2122 112333343
Q ss_pred HhhccCEEEEechhc
Q 023401 147 TALKADLIVLNTAVA 161 (282)
Q Consensus 147 ~a~~~DLVIaNT~v~ 161 (282)
...++|.+|.|..+.
T Consensus 242 ~l~~IDiLInnAGi~ 256 (406)
T PRK07424 242 LLEKVDILIINHGIN 256 (406)
T ss_pred HhCCCCEEEECCCcC
Confidence 456799999987653
No 297
>PRK12743 oxidoreductase; Provisional
Probab=40.45 E-value=1.5e+02 Score=25.84 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=42.6
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--ee-h-hchhHHH---
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--IS-A-KGQETIN--- 146 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~~-~-k~~~~i~--- 146 (282)
+|+||+.+ |..-+=.++++.|.+.|+.|.++..+..+. ...+.+++...|..+ +. | ....+++
T Consensus 2 ~k~vlItG------as~giG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 71 (256)
T PRK12743 2 AQVAIVTA------SDSGIGKACALLLAQQGFDIGITWHSDEEG----AKETAEEVRSHGVRAEIRQLDLSDLPEGAQAL 71 (256)
T ss_pred CCEEEEEC------CCchHHHHHHHHHHHCCCEEEEEeCCChHH----HHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 45565544 222366789999999999998776443321 122344555444322 21 1 1122221
Q ss_pred -----HhhccCEEEEechh
Q 023401 147 -----TALKADLIVLNTAV 160 (282)
Q Consensus 147 -----~a~~~DLVIaNT~v 160 (282)
.....|.||.|...
T Consensus 72 ~~~~~~~~~id~li~~ag~ 90 (256)
T PRK12743 72 DKLIQRLGRIDVLVNNAGA 90 (256)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 23468999999765
No 298
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=40.44 E-value=83 Score=29.41 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=29.4
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
+|||++.- ..|-=.=++.+|+.|++.|++|.+.+..
T Consensus 2 rIl~~~~p--~~GHv~P~l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 2 RVLITTIG--SRGDVQPLVALAWALRAAGHEVRVATPP 37 (401)
T ss_pred eEEEEeCC--CcchHHHHHHHHHHHHHCCCeEEEeeCH
Confidence 68888875 3565556789999999999999999943
No 299
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=40.42 E-value=1.2e+02 Score=29.87 Aligned_cols=59 Identities=19% Similarity=0.376 Sum_probs=42.2
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC---CCCchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK---PSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~---G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
+|+|++|. |++ .-+|+|..|.+.|.+|.++-... +..+.++...+++.|.++||++...
T Consensus 174 ~~~vvIIG------gG~-ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~ 235 (466)
T PRK06115 174 PKHLVVIG------AGV-IGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLG 235 (466)
T ss_pred CCeEEEEC------CCH-HHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEC
Confidence 46666664 443 57899999999999999886322 1123456667888888899998855
No 300
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=40.41 E-value=2.6e+02 Score=25.22 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=53.5
Q ss_pred HHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh----c------hhHHH--HhhccCEEEEechh-
Q 023401 94 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----G------QETIN--TALKADLIVLNTAV- 160 (282)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k----~------~~~i~--~a~~~DLVIaNT~v- 160 (282)
.-++.++++.|.+-+.+...+.+++......+++.+.+.|+.+.... + ...++ .+.++|.||+.+-.
T Consensus 149 ~a~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~~~ 228 (348)
T cd06350 149 LAIVALLKHFGWTWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFGDED 228 (348)
T ss_pred HHHHHHHHHCCCeEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEeCcH
Confidence 44567777878764444433444566677788888888998887421 1 11122 24567999886543
Q ss_pred -chHHHHHHhhccCCCCCCceEEEeeec
Q 023401 161 -AGKWLDAVLKEDVPRVLPNVLWWIHEM 187 (282)
Q Consensus 161 -~g~wl~~l~~~~~~~~~~pVIWWIHE~ 187 (282)
+...+.++.+.. ..+..||+.+.
T Consensus 229 ~~~~~~~~a~~~g----~~~~~~i~~~~ 252 (348)
T cd06350 229 DALRLFCEAYKLG----MTGKYWIISTD 252 (348)
T ss_pred HHHHHHHHHHHhC----CCCeEEEEEcc
Confidence 344556654322 34667777664
No 301
>PRK08278 short chain dehydrogenase; Provisional
Probab=40.39 E-value=2.5e+02 Score=24.98 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=45.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhh---hhhhHHHHHHcCCcee----ehhchhH
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV---IYSLEHKMWDRGVQVI----SAKGQET 144 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v---~~~L~~kll~rgI~v~----~~k~~~~ 144 (282)
|++|++|+++. +|+ +=.++|+.|.+.|++|+++.....+ .... ...+.+++...+..+. +-...++
T Consensus 4 ~~~k~vlItGa----s~g--IG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~ 76 (273)
T PRK08278 4 LSGKTLFITGA----SRG--IGLAIALRAARDGANIVIAAKTAEP-HPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQ 76 (273)
T ss_pred CCCCEEEEECC----Cch--HHHHHHHHHHHCCCEEEEEeccccc-ccchhhHHHHHHHHHHhcCCceEEEEecCCCHHH
Confidence 57888887765 222 4567888899999998887643221 1111 1223445554443322 1122222
Q ss_pred HH--------HhhccCEEEEechh
Q 023401 145 IN--------TALKADLIVLNTAV 160 (282)
Q Consensus 145 i~--------~a~~~DLVIaNT~v 160 (282)
+. ....+|.||.|...
T Consensus 77 i~~~~~~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 77 VAAAVAKAVERFGGIDICVNNASA 100 (273)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 22 12468999988764
No 302
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=40.28 E-value=1.7e+02 Score=25.06 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=42.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (282)
|++|.+| |+- -|| -+=.++|+.|.+.|+.|+++..+..+. . ....+++.+.+..+. +....+.+.
T Consensus 1 ~~~k~~l-VtG---~s~--giG~~~a~~l~~~G~~vv~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 70 (246)
T PRK12938 1 MSQRIAY-VTG---GMG--GIGTSICQRLHKDGFKVVAGCGPNSPR---R-VKWLEDQKALGFDFIASEGNVGDWDSTKA 70 (246)
T ss_pred CCCCEEE-EEC---CCC--hHHHHHHHHHHHcCCEEEEEcCCChHH---H-HHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 4566444 432 223 366789999999999987766432211 1 112334444454443 112222222
Q ss_pred -------HhhccCEEEEechhc
Q 023401 147 -------TALKADLIVLNTAVA 161 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v~ 161 (282)
...+.|.||.|....
T Consensus 71 ~~~~~~~~~~~id~li~~ag~~ 92 (246)
T PRK12938 71 AFDKVKAEVGEIDVLVNNAGIT 92 (246)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 224689999887653
No 303
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=39.88 E-value=1.6e+02 Score=25.52 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=25.5
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
.+++|++|+.+ |+.-+=.++|+.|.+.|++|.++..
T Consensus 9 ~~~~k~ilItG------a~g~IG~~la~~l~~~G~~V~~~~r 44 (259)
T PRK08213 9 DLSGKTALVTG------GSRGLGLQIAEALGEAGARVVLSAR 44 (259)
T ss_pred CcCCCEEEEEC------CCchHHHHHHHHHHHcCCEEEEEeC
Confidence 35788777763 2233567899999999999866653
No 304
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=39.87 E-value=83 Score=30.53 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=49.9
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHh--------------CCCeEEEEeccCCC---CchhhhhhhHHHHHHcCCcee
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRG--------------VGTKVNWITIQKPS---EEDEVIYSLEHKMWDRGVQVI 137 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq--------------~G~~V~vL~~~~G~---~~~~v~~~L~~kll~rgI~v~ 137 (282)
++|++|. |+| .=+|+|..|.+ .|.+|.++...+.. ...++...+++.|.++||++.
T Consensus 174 ~~vvVvG------gG~-~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~ 246 (424)
T PTZ00318 174 LHFVVVG------GGP-TGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIR 246 (424)
T ss_pred CEEEEEC------CCH-HHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEE
Confidence 4788874 333 46777777764 47889988844221 234555667888888999998
Q ss_pred ehhchhHHH---------HhhccCEEEEechh
Q 023401 138 SAKGQETIN---------TALKADLIVLNTAV 160 (282)
Q Consensus 138 ~~k~~~~i~---------~a~~~DLVIaNT~v 160 (282)
......++. ....+|+||.-+-+
T Consensus 247 ~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 247 TKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred eCCeEEEEeCCEEEECCCCEEEccEEEEccCC
Confidence 653322221 12358888886654
No 305
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=39.77 E-value=90 Score=32.07 Aligned_cols=59 Identities=25% Similarity=0.350 Sum_probs=41.5
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEE---eccCCCCchhhhhhhHHHHHHcCCceeeh
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI---TIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL---~~~~G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
.|-+|++||+|= |.=.||+ .+++.++.|++.|.+|+-+ ..+.. +-.+++.+.|+++..-
T Consensus 389 ~~~~G~rVlIVD-DViTTGg--Si~eaie~l~~aG~~V~~v~vlVDR~~--------g~~~~L~~~gv~~~Sl 450 (477)
T PRK05500 389 NFHPGETVVVVD-DILITGK--SVMEGAEKLKSAGLNVRDIVVFIDHEQ--------GVKDKLQSHGYQAYSV 450 (477)
T ss_pred CCCCcCEEEEEE-eccccCH--HHHHHHHHHHHCCCEEEEEEEEEECCc--------chHHHHHhcCCCEEEE
Confidence 456899998885 5666777 6789999999999996533 33322 1245677788888755
No 306
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=39.68 E-value=71 Score=32.26 Aligned_cols=103 Identities=20% Similarity=0.266 Sum_probs=67.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc------hhHH
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------QETI 145 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~------~~~i 145 (282)
.+|.+|....|=.--|. .|+.-|+..|++|.|..++-.+..|++ ..-+.+.||+|+.-++ ..-+
T Consensus 46 l~G~~i~~~~Hl~~~Ta------~l~~~L~~~GA~v~~~~~np~Stqd~v----aaaL~~~gi~v~a~~~~~~~ey~~~~ 115 (425)
T PRK05476 46 LKGARIAGCLHMTIQTA------VLIETLKALGAEVRWASCNPFSTQDDV----AAALAAAGIPVFAWKGETLEEYWECI 115 (425)
T ss_pred CCCCEEEEEEeccccHH------HHHHHHHHcCCEEEEEeCCCcccCHHH----HHHHHHCCceEEecCCCCHHHHHHHH
Confidence 57999999999777665 577889999999999997766677788 4444566999997543 2223
Q ss_pred HH---hhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeecc
Q 023401 146 NT---ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR 188 (282)
Q Consensus 146 ~~---a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r 188 (282)
.. ..++|+|+=.-.-....+- ...|...++++-=.=|..
T Consensus 116 ~~~l~~~~p~iiiDdGgdl~~~~~----~~~~~~~~~i~G~~EeTt 157 (425)
T PRK05476 116 ERALDGHGPNMILDDGGDLTLLVH----TERPELLANIKGVTEETT 157 (425)
T ss_pred HHHhcCCCCCEEEecccHHHHHHH----HHhhHhHhccEeeeecch
Confidence 32 2458888776554444443 222333445555444443
No 307
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=39.63 E-value=1.2e+02 Score=30.10 Aligned_cols=80 Identities=19% Similarity=0.137 Sum_probs=47.1
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHH-HHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCC-cee-ehhchhHH
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAF-LLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV-QVI-SAKGQETI 145 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~-~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI-~v~-~~k~~~~i 145 (282)
..+..||+|.+.. | |-.++.+++ ++++.|.+|+.+...-.. . ..+++.+....- +++ .+.....+
T Consensus 312 ~~~l~gkrvai~~------~-~~~~~~~~~~ll~elGm~v~~~~~~~~~-~----~~~~~~l~~l~~~~~~v~~~~~~e~ 379 (443)
T TIGR01862 312 KERLQGKRVCLYI------G-GSRLWHWIGSAEEDLGMEVVAVGYEFAH-E----DDYEKTMKRMGEGTLLIDDPNELEF 379 (443)
T ss_pred HHHhcCCeEEEEC------C-chhHHHHHHHHHHHCCCEEEEecccccc-H----HHHHHHHHhCCCceEEecCCCHHHH
Confidence 4677899998842 2 335557888 999999999888522110 1 123444444321 333 33333333
Q ss_pred H---HhhccCEEEEechh
Q 023401 146 N---TALKADLIVLNTAV 160 (282)
Q Consensus 146 ~---~a~~~DLVIaNT~v 160 (282)
. ...++||+|.|+-.
T Consensus 380 ~~~i~~~~pdllig~s~~ 397 (443)
T TIGR01862 380 EEILEKLKPDIIFSGIKE 397 (443)
T ss_pred HHHHHhcCCCEEEEcCcc
Confidence 2 34579999999953
No 308
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=39.52 E-value=1.6e+02 Score=29.00 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=45.1
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHcC--CceeehhchhHHH---
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG--VQVISAKGQETIN--- 146 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~~~v~~~L~~kll~rg--I~v~~~k~~~~i~--- 146 (282)
.||++.++ |.|-.+..+++.|. +.|.++.++...++. ..+.-..+++.+...| ..++.......+.
T Consensus 292 ~~k~vai~-------~~~~~~~~l~~~L~~elGm~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~D~~~~~~~i 363 (427)
T cd01971 292 LPRRFAVI-------ADSTYALGLARFLVNELGWVPAKQVITDNP-PEKYRSAIENEFEAEGVSAEVVFSEDGYAIGQSL 363 (427)
T ss_pred CCceEEEE-------CChHHHHHHHHHHHHhcCCceEEEEecCCC-CHHHHHHHHHHHHhcCCCCcEEEecCHHHHHHHH
Confidence 37888765 56779999999995 899999887644442 1222112333332222 2222221122232
Q ss_pred Hhh----ccCEEEEech
Q 023401 147 TAL----KADLIVLNTA 159 (282)
Q Consensus 147 ~a~----~~DLVIaNT~ 159 (282)
... ++|+||.|+-
T Consensus 364 ~~~~~~~~~dliig~s~ 380 (427)
T cd01971 364 RQSDFKYKPPIIFGSSW 380 (427)
T ss_pred HhCCCCCCCCEEEechH
Confidence 122 3999999997
No 309
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=39.45 E-value=1.7e+02 Score=28.15 Aligned_cols=78 Identities=10% Similarity=0.115 Sum_probs=45.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcC-CceeehhchhHHHHhhc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG-VQVISAKGQETINTALK 150 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rg-I~v~~~k~~~~i~~a~~ 150 (282)
.+|++|.+|++ -|+ +.-.++..+...|.+|.+.+-++- .+++.....+...+.| +.+.++ .-+...+
T Consensus 151 l~g~~va~vGd-~~r-----v~~Sl~~~~~~~G~~v~~~~P~~~--~~~~~~~~~~~~~~~g~i~~~~d----~~~av~~ 218 (311)
T PRK14804 151 LNQKQLTYIGV-HNN-----VVNSLIGITAALGIHLTLVTPIAA--KENIHAQTVERAKKKGTLSWEMN----LHKAVSH 218 (311)
T ss_pred CCCCEEEEECC-CCc-----HHHHHHHHHHHcCCEEEEECCCCc--cHHHHHHHHHHHHhcCCeEEEeC----HHHHhCC
Confidence 58999999994 444 344555556667999999884432 1222222223333334 333333 1225678
Q ss_pred cCEEEEechhc
Q 023401 151 ADLIVLNTAVA 161 (282)
Q Consensus 151 ~DLVIaNT~v~ 161 (282)
+|.|+..|-+.
T Consensus 219 aDvvy~d~w~~ 229 (311)
T PRK14804 219 ADYVYTDTWLD 229 (311)
T ss_pred CCEEEeeeeEE
Confidence 99999987764
No 310
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=39.45 E-value=78 Score=21.79 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=26.7
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEe
Q 023401 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 276 (282)
Q Consensus 238 ~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~~ 276 (282)
|.+++.-+ ++.+ .+-+.+.+.+|+|++++.|.+.
T Consensus 10 grt~eqk~----~l~~-~i~~~l~~~~g~~~~~v~V~i~ 43 (58)
T cd00491 10 GRTDEQKR----ELIE-RVTEAVSEILGAPEATIVVIID 43 (58)
T ss_pred CCCHHHHH----HHHH-HHHHHHHHHhCcCcccEEEEEE
Confidence 45666666 7777 6888999999999999987653
No 311
>PRK06031 phosphoribosyltransferase; Provisional
Probab=39.40 E-value=58 Score=30.15 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=28.5
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~ 108 (282)
...+||+||+| .|.-.||+ -+.+.++.|+++|.+|+
T Consensus 150 ~~~~GkrVLIV-DDVitTG~--Tl~aa~~lL~~~Ga~Vv 185 (233)
T PRK06031 150 PLLEGRRVALI-DDVISSGA--SIVAGLRLLAACGIEPA 185 (233)
T ss_pred ccCCCCEEEEE-EeEccccH--HHHHHHHHHHHcCCeEE
Confidence 35799999888 56777888 56688899999998855
No 312
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=39.34 E-value=2.3e+02 Score=28.52 Aligned_cols=88 Identities=13% Similarity=0.036 Sum_probs=48.9
Q ss_pred ccccEEEEEec-cCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhc
Q 023401 72 MKSKLVLLVSH-ELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (282)
Q Consensus 72 ~~~KkILLISH-ELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~ 150 (282)
.+|++|.++.- +++..-+=-+.-.++..+...|.+|.+.+-++=...++++...++...+.|..+.... ..-+.+.+
T Consensus 185 l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~--d~~eav~~ 262 (395)
T PRK07200 185 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN--SMEEAFKD 262 (395)
T ss_pred cCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc--CHHHHhCC
Confidence 57889999972 4432211224445555566679999998843211123332222333444575543211 11236788
Q ss_pred cCEEEEechhc
Q 023401 151 ADLIVLNTAVA 161 (282)
Q Consensus 151 ~DLVIaNT~v~ 161 (282)
+|.|+..+-++
T Consensus 263 aDvVYtd~W~s 273 (395)
T PRK07200 263 ADIVYPKSWAP 273 (395)
T ss_pred CCEEEEcCeee
Confidence 99999997653
No 313
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=39.29 E-value=1.4e+02 Score=25.61 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=44.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~--~~k~~~~i~- 146 (282)
+++|++|+++ |..-+=.++|+.|.+.|.+|.++..+.++ .. ..+.+.+.+.+.++ + +-....++.
T Consensus 4 ~~~~~~lItG------~s~~iG~~la~~l~~~g~~v~~~~~~~~~---~~-~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 73 (247)
T PRK12935 4 LNGKVAIVTG------GAKGIGKAITVALAQEGAKVVINYNSSKE---AA-ENLVNELGKEGHDVYAVQADVSKVEDANR 73 (247)
T ss_pred CCCCEEEEEC------CCCHHHHHHHHHHHHcCCEEEEEcCCcHH---HH-HHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 4677777743 33447788999999999998766544332 11 12234444444333 2 112222222
Q ss_pred -------HhhccCEEEEechh
Q 023401 147 -------TALKADLIVLNTAV 160 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v 160 (282)
.....|.||.|+..
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 74 LVEEAVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 12458999998765
No 314
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=39.23 E-value=3e+02 Score=25.04 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhC-CCeEEEEe-ccCC
Q 023401 91 LLLMELAFLLRGV-GTKVNWIT-IQKP 115 (282)
Q Consensus 91 LlLleLA~~Lkq~-G~~V~vL~-~~~G 115 (282)
+.|.-+.+.|++. |+++.++. +++-
T Consensus 13 ~~~~pl~~~l~~~~~~~~~~~~tg~h~ 39 (363)
T cd03786 13 IKLAPLIRALKKDPGFELVLVVTGQHY 39 (363)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeCCCC
Confidence 3456677888887 89988666 4443
No 315
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=39.23 E-value=1.5e+02 Score=24.71 Aligned_cols=74 Identities=30% Similarity=0.199 Sum_probs=44.2
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEEe-ccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccCEEEEechhchHHH
Q 023401 87 SGGPLLLMELAFLLRGVGTKVNWIT-IQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWL 165 (282)
Q Consensus 87 TGAPLlLleLA~~Lkq~G~~V~vL~-~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~DLVIaNT~v~g~wl 165 (282)
+-++|-.-++..+|.. +.+++++. ++.+-. .+-+.+.+.+.++||.+..+ +|..+-+=+
T Consensus 42 ~~~~l~~~~l~~ll~~-~peivliGTG~~~~~--~~~~~~~~~l~~~Gi~ve~m-----------------~T~aAcrTY 101 (117)
T cd05126 42 TSHGLQPEELEELLEE-GVEVIVIGTGQSGAL--KVPPETVEKLEKRGVEVLVL-----------------PTEEAVKRY 101 (117)
T ss_pred CcccCCHHHHHHHHhc-CCCEEEEcCCCCccc--cCCHHHHHHHHhcCCEEEEc-----------------ChHHHHHHH
Confidence 4556778888888865 67777666 444310 11223455665666666554 455555555
Q ss_pred HHHhhccCCCCCCceEEEee
Q 023401 166 DAVLKEDVPRVLPNVLWWIH 185 (282)
Q Consensus 166 ~~l~~~~~~~~~~pVIWWIH 185 (282)
..|..|.. +|...||
T Consensus 102 N~L~~EgR-----rV~Aa~H 116 (117)
T cd05126 102 NELAGKGR-----RVLAVIH 116 (117)
T ss_pred HHHHhCCC-----eEEEEEe
Confidence 66665555 7788877
No 316
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=39.11 E-value=1e+02 Score=24.61 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh-----c----hhHHH--HhhccCEEEEe
Q 023401 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----G----QETIN--TALKADLIVLN 157 (282)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k-----~----~~~i~--~a~~~DLVIaN 157 (282)
-++++|+.|.+.|+++.... | ..+-|.+.|+++..-. + ....+ ...++|+||..
T Consensus 14 ~~~~~a~~l~~~G~~i~aT~---g---------Ta~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~ 78 (116)
T cd01423 14 ELLPTAQKLSKLGYKLYATE---G---------TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINL 78 (116)
T ss_pred hHHHHHHHHHHCCCEEEEcc---H---------HHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEEC
Confidence 46799999999999987433 3 2455666788654320 1 11122 25789999764
No 317
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=39.11 E-value=1.2e+02 Score=29.80 Aligned_cols=58 Identities=26% Similarity=0.479 Sum_probs=41.7
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC---CCchhhhhhhHHHHHHcCCceeeh
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G---~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
|++++|. |++ .-+|+|..|++.|.+|.++..... ..+.++...+++.+.++||.+...
T Consensus 171 ~~vvIIG------gG~-iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~ 231 (458)
T PRK06912 171 SSLLIVG------GGV-IGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTG 231 (458)
T ss_pred CcEEEEC------CCH-HHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEEC
Confidence 5566663 444 577999999999999998874322 124466667788888899998865
No 318
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=38.76 E-value=79 Score=28.40 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=31.3
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (282)
+|.-+++||+ +|.---+.++++..|+.|..++.+++.+++
T Consensus 109 ~gDvli~iS~----SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s 148 (196)
T PRK10886 109 AGDVLLAIST----RGNSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_pred CCCEEEEEeC----CCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3444555554 677778999999999999999999976663
No 319
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=38.65 E-value=1.1e+02 Score=29.70 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=47.4
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccCCCC----chhhhhhhHHHHHHcCCceeeh---hchhHHH--HhhccCEEEEec
Q 023401 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSE----EDEVIYSLEHKMWDRGVQVISA---KGQETIN--TALKADLIVLNT 158 (282)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~G~~----~~~v~~~L~~kll~rgI~v~~~---k~~~~i~--~a~~~DLVIaNT 158 (282)
|-|=+-..-.+.|.++|++|+.+..+-+-. ..-..++.....+++|||++.- +..+.++ .+.++|++|+
T Consensus 8 GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e~~~~l~~l~~D~ivv-- 85 (307)
T COG0223 8 GTPEFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDPEFLEELAALDPDLIVV-- 85 (307)
T ss_pred cCchhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcHHHHHHHhccCCCEEEE--
Confidence 555555566677777899988887553221 1123346678888899999843 3322333 3557899986
Q ss_pred hhchHHHH
Q 023401 159 AVAGKWLD 166 (282)
Q Consensus 159 ~v~g~wl~ 166 (282)
+.-|+.+.
T Consensus 86 vayG~ilp 93 (307)
T COG0223 86 VAYGQILP 93 (307)
T ss_pred EehhhhCC
Confidence 33355544
No 320
>PRK06172 short chain dehydrogenase; Provisional
Probab=38.55 E-value=1.9e+02 Score=24.96 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=44.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~--~~k~~~~i~- 146 (282)
+++|+||+++- + .-+=.++|+.|.+.|.+|.++. +.++ .. ..+.+++.+.+..+ + +-....++.
T Consensus 5 l~~k~ilItGa----s--~~iG~~ia~~l~~~G~~v~~~~-r~~~---~~-~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 73 (253)
T PRK06172 5 FSGKVALVTGG----A--AGIGRATALAFAREGAKVVVAD-RDAA---GG-EETVALIREAGGEALFVACDVTRDAEVKA 73 (253)
T ss_pred CCCCEEEEeCC----C--chHHHHHHHHHHHcCCEEEEEe-CCHH---HH-HHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 56888888762 2 2355678999999999977765 3332 11 12344444443222 2 112222222
Q ss_pred -------HhhccCEEEEechhc
Q 023401 147 -------TALKADLIVLNTAVA 161 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v~ 161 (282)
....+|.||.|....
T Consensus 74 ~~~~~~~~~g~id~li~~ag~~ 95 (253)
T PRK06172 74 LVEQTIAAYGRLDYAFNNAGIE 95 (253)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 124679999998753
No 321
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=38.43 E-value=88 Score=30.23 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=33.6
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (282)
=++||.+++|= |.=.||+ -|.+.|+.||+.|+.-+.+..-+|-
T Consensus 214 dv~Gr~viIVD-DIidTG~--Tl~~aa~~Lk~~GA~~V~~~~THgv 256 (319)
T PRK04923 214 DVQGKTCVLVD-DLVDTAG--TLCAAAAALKQRGALKVVAYITHPV 256 (319)
T ss_pred CCCCCEEEEEe-cccCchH--HHHHHHHHHHHCCCCEEEEEEECcc
Confidence 37999887774 5556677 4899999999999987766666774
No 322
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=38.42 E-value=1.5e+02 Score=27.02 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=49.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhcc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~ 151 (282)
++||+||+|+. |. +-..=++.|.++|..|.+++.+= ..++ .+-..+.++..+.+..... ....+
T Consensus 10 l~~k~VlvvGg-----G~--va~rKa~~ll~~ga~v~Vvs~~~---~~el----~~~~~~~~i~~~~~~~~~~--~~~~~ 73 (210)
T COG1648 10 LEGKKVLVVGG-----GS--VALRKARLLLKAGADVTVVSPEF---EPEL----KALIEEGKIKWIEREFDAE--DLDDA 73 (210)
T ss_pred cCCCEEEEECC-----CH--HHHHHHHHHHhcCCEEEEEcCCc---cHHH----HHHHHhcCcchhhcccChh--hhcCc
Confidence 57888999852 32 66677899999999999999332 2222 3444444555554322222 23459
Q ss_pred CEEEEec---hhchHHHHHHh
Q 023401 152 DLIVLNT---AVAGKWLDAVL 169 (282)
Q Consensus 152 DLVIaNT---~v~g~wl~~l~ 169 (282)
++||+-| .++.+......
T Consensus 74 ~lviaAt~d~~ln~~i~~~a~ 94 (210)
T COG1648 74 FLVIAATDDEELNERIAKAAR 94 (210)
T ss_pred eEEEEeCCCHHHHHHHHHHHH
Confidence 9999876 44445444444
No 323
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=38.33 E-value=2.3e+02 Score=27.03 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=47.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhcc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~ 151 (282)
++|.+|.+|.+- ++ +.-+++..|...|.+|.+.+-++=...+++...+++...+.|..+......+ +...++
T Consensus 146 l~g~~v~~vGd~-~~-----v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~--~a~~~a 217 (304)
T TIGR00658 146 LKGVKVVYVGDG-NN-----VCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPV--EAVKGA 217 (304)
T ss_pred CCCcEEEEEeCC-Cc-----hHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHH--HHhCCC
Confidence 689999999964 43 5566666777789999998832211223343333333445565443211111 256789
Q ss_pred CEEEEec
Q 023401 152 DLIVLNT 158 (282)
Q Consensus 152 DLVIaNT 158 (282)
|.|++..
T Consensus 218 Dvvy~~~ 224 (304)
T TIGR00658 218 DVIYTDV 224 (304)
T ss_pred CEEEEcC
Confidence 9999954
No 324
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=38.30 E-value=71 Score=32.12 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=55.3
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc--eeehhchhHHHH
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VISAKGQETINT 147 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~--v~~~k~~~~i~~ 147 (282)
+-++||+|||| .|.=.||+ -|.+.++.||+.|+.-+.+..-.|+..++-.+++ ....+. +..++..+++..
T Consensus 336 ~~v~gK~VlLV-DDvitTG~--Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~~~~i----~~~~~~~li~~~~~~~ei~~ 408 (445)
T PRK08525 336 KVLEGKRIVVI-DDSIVRGT--TSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGI----DTPTFEELISANKSVEEVRK 408 (445)
T ss_pred cccCCCeEEEE-ecccCcHH--HHHHHHHHHHhcCCCEEEEEEECCCcCCchhhhC----cCCChhhEEEcCCCHHHHHH
Confidence 34789999888 55667788 4568999999999886666656665333332222 211222 234556777887
Q ss_pred hhccCEEEEech
Q 023401 148 ALKADLIVLNTA 159 (282)
Q Consensus 148 a~~~DLVIaNT~ 159 (282)
...+|-+.-.|+
T Consensus 409 ~~~adsl~~ls~ 420 (445)
T PRK08525 409 YIGADSLSFLSI 420 (445)
T ss_pred HhCCCeEeccCH
Confidence 888998888887
No 325
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=38.29 E-value=76 Score=23.73 Aligned_cols=57 Identities=25% Similarity=0.295 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCC---CeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccCEEEEec
Q 023401 92 LLMELAFLLRGVG---TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNT 158 (282)
Q Consensus 92 lLleLA~~Lkq~G---~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~DLVIaNT 158 (282)
+=..|++-|.+.| .++.+.+.+.++ .+.+...+.++.+......+ .+.++|.||..+
T Consensus 10 mg~al~~~l~~~g~~~~~v~~~~~r~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~advvilav 69 (96)
T PF03807_consen 10 MGSALARGLLASGIKPHEVIIVSSRSPE-------KAAELAKEYGVQATADDNEE---AAQEADVVILAV 69 (96)
T ss_dssp HHHHHHHHHHHTTS-GGEEEEEEESSHH-------HHHHHHHHCTTEEESEEHHH---HHHHTSEEEE-S
T ss_pred HHHHHHHHHHHCCCCceeEEeeccCcHH-------HHHHHHHhhccccccCChHH---hhccCCEEEEEE
Confidence 4456788889999 999988656552 22222334466666643333 456899999865
No 326
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=38.28 E-value=62 Score=27.94 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=38.5
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe---ccCCCCchhhhhhhHHHHHHc-CCceee
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT---IQKPSEEDEVIYSLEHKMWDR-GVQVIS 138 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~---~~~G~~~~~v~~~L~~kll~r-gI~v~~ 138 (282)
..+|++||+| .|.-.||. -|.+.+..|++.|.+|+-+. .++.. +=.+++.+. |+++..
T Consensus 105 ~~~g~~VlIV-DDvi~TG~--Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~-------~~~~~l~~~~gv~~~s 166 (173)
T TIGR00336 105 LLEGDKVVVV-EDVITTGT--SILEAVEIIQAAGGQVAGVIIAVDRQER-------SAGQEFEKEYGLPVIS 166 (173)
T ss_pred CCCCCEEEEE-eccccChH--HHHHHHHHHHHcCCeEEEEEEEEecCch-------hHHHHHHHhcCCeEEE
Confidence 5688988887 56666777 68899999999999965333 33220 013455544 888764
No 327
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=38.26 E-value=40 Score=30.69 Aligned_cols=39 Identities=23% Similarity=0.168 Sum_probs=29.4
Q ss_pred ccccEEEEEeccCCCCCchHH---HHHHHHHHHhCCCeEEEEeccCC
Q 023401 72 MKSKLVLLVSHELSLSGGPLL---LMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLl---LleLA~~Lkq~G~~V~vL~~~~G 115 (282)
++||+|++ ..||+-=. ..++++.|++.|++|.++..+.+
T Consensus 3 l~~k~Ill-----gVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA 44 (196)
T PRK08305 3 LKGKRIGF-----GLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTV 44 (196)
T ss_pred CCCCEEEE-----EEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhH
Confidence 47888875 45655433 46889999999999999997765
No 328
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=37.90 E-value=71 Score=24.13 Aligned_cols=39 Identities=21% Similarity=0.061 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc
Q 023401 95 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG 141 (282)
Q Consensus 95 eLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~ 141 (282)
..+..|...|.++++..+-++ ...++|.++||.++....
T Consensus 52 ~~~~~l~~~~v~~vi~~~iG~--------~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 52 LAARLLALEGCDAVLVGGIGG--------PAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHHCCCcEEEEcccCc--------cHHHHHHHcCCEEEEcCC
Confidence 467788889999998886655 347899999999997654
No 329
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=37.85 E-value=57 Score=25.23 Aligned_cols=38 Identities=26% Similarity=0.228 Sum_probs=29.4
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
+-.++++|+. |.+--++++++.+++.|..++++++...
T Consensus 61 ~~~~i~iS~~----g~~~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 61 GDVVIAISFS----GETKETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred CCEEEEEeCC----CCCHHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 3457777764 4556789999999999999999996654
No 330
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=37.83 E-value=48 Score=32.55 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=20.7
Q ss_pred hhHHHHHHcCCceeehhchhHHHHhhccCEEEEec
Q 023401 124 SLEHKMWDRGVQVISAKGQETINTALKADLIVLNT 158 (282)
Q Consensus 124 ~L~~kll~rgI~v~~~k~~~~i~~a~~~DLVIaNT 158 (282)
.+.+.|.++|..+..+ ..++|+||+||
T Consensus 18 ~~~~~l~~~g~~~~~~--------~~~aD~viinT 44 (430)
T TIGR01125 18 VMLGILREAGYEVTPN--------YEDADYVIVNT 44 (430)
T ss_pred HHHHHHHHCcCEECCC--------cccCCEEEEeC
Confidence 3677777788776665 45799999997
No 331
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=37.76 E-value=65 Score=28.06 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=26.7
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeE
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKV 107 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V 107 (282)
.+||+||+| .|.-.||+ -|.++++.|++.|.++
T Consensus 118 ~~gk~VLIV-DDiitTG~--Tl~aa~~~L~~~GA~~ 150 (178)
T PRK07322 118 LKGKRVAIV-DDVVSTGG--TLTALERLVERAGGQV 150 (178)
T ss_pred cCCCEEEEE-eccccccH--HHHHHHHHHHHcCCEE
Confidence 678887666 67778898 4579999999999883
No 332
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=37.67 E-value=80 Score=31.08 Aligned_cols=62 Identities=13% Similarity=0.057 Sum_probs=42.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG 141 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~ 141 (282)
..||+|++|. +=..-|++|+.|...|.+|.++..+...+ -.......+++.+.||++.....
T Consensus 270 ~~gk~VvVIG-------gG~~a~d~A~~l~~~G~~Vtlv~~~~~~~-~~~~~~~~~~l~~~GV~~~~~~~ 331 (449)
T TIGR01316 270 YAGKSVVVIG-------GGNTAVDSARTALRLGAEVHCLYRRTRED-MTARVEEIAHAEEEGVKFHFLCQ 331 (449)
T ss_pred cCCCeEEEEC-------CCHHHHHHHHHHHHcCCEEEEEeecCccc-CCCCHHHHHHHHhCCCEEEeccC
Confidence 3678888884 33578999999999999999888543221 11112234667788998875533
No 333
>PRK07814 short chain dehydrogenase; Provisional
Probab=37.66 E-value=1.7e+02 Score=25.66 Aligned_cols=78 Identities=15% Similarity=0.229 Sum_probs=43.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc--ee--ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VI--SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~--v~--~~k~~~~i~- 146 (282)
+++|++|+++ -+|+ +=.++++.|.+.|++|+++... ++ . ...+.+++.+.+.. .+ +-...+++.
T Consensus 8 ~~~~~vlItG----asgg--IG~~~a~~l~~~G~~Vi~~~r~-~~---~-~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 76 (263)
T PRK07814 8 LDDQVAVVTG----AGRG--LGAAIALAFAEAGADVLIAART-ES---Q-LDEVAEQIRAAGRRAHVVAADLAHPEATAG 76 (263)
T ss_pred CCCCEEEEEC----CCCh--HHHHHHHHHHHCCCEEEEEeCC-HH---H-HHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 5788877765 1232 5667889999999998777643 21 1 12334445443332 22 112233322
Q ss_pred -------HhhccCEEEEechh
Q 023401 147 -------TALKADLIVLNTAV 160 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v 160 (282)
...++|.||-|..+
T Consensus 77 ~~~~~~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 77 LAGQAVEAFGRLDIVVNNVGG 97 (263)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 12468999988654
No 334
>PRK13566 anthranilate synthase; Provisional
Probab=37.64 E-value=96 Score=33.38 Aligned_cols=34 Identities=38% Similarity=0.444 Sum_probs=27.4
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
+|++|++|-|+-+..+ .++++|++.|++|.++-.
T Consensus 525 ~g~~IlvID~~dsf~~------~l~~~Lr~~G~~v~vv~~ 558 (720)
T PRK13566 525 EGKRVLLVDHEDSFVH------TLANYFRQTGAEVTTVRY 558 (720)
T ss_pred CCCEEEEEECCCchHH------HHHHHHHHCCCEEEEEEC
Confidence 5689999999965444 688999999999877763
No 335
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=37.50 E-value=85 Score=22.13 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=26.8
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Q 023401 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275 (282)
Q Consensus 238 ~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~ 275 (282)
|.+.+.-+ .+.+ .+-+.+.+.+|+|++++.|.+
T Consensus 11 grt~eqK~----~l~~-~it~~l~~~lg~~~~~v~V~i 43 (63)
T TIGR00013 11 GRTDEQKR----QLIE-GVTEAMAETLGANLESIVVII 43 (63)
T ss_pred CCCHHHHH----HHHH-HHHHHHHHHhCCCcccEEEEE
Confidence 46777777 7777 788899999999999988765
No 336
>PRK07831 short chain dehydrogenase; Provisional
Probab=37.47 E-value=2e+02 Score=25.11 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=27.4
Q ss_pred CCccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 66 SSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 66 ~~~~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
+++..++++|++|++. -+|.. +=..+++.|.+.|+.|.+..
T Consensus 9 ~~~~~~~~~k~vlItG----~sg~g-IG~~ia~~l~~~G~~V~~~~ 49 (262)
T PRK07831 9 VPGHGLLAGKVVLVTA----AAGTG-IGSATARRALEEGARVVISD 49 (262)
T ss_pred CCcccccCCCEEEEEC----CCccc-HHHHHHHHHHHcCCEEEEEe
Confidence 3456788999877752 12211 34678888999999976654
No 337
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=37.40 E-value=1.9e+02 Score=25.15 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=43.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (282)
+++|+||+..- +|+ +=.++++.|.+.|++|+++. +..+ .. ..+.+++.+.|.++. +....++++
T Consensus 8 ~~~k~vlItGa----~g~--iG~~ia~~l~~~G~~V~~~~-r~~~---~~-~~~~~~i~~~~~~~~~~~~D~~~~~~~~~ 76 (255)
T PRK07523 8 LTGRRALVTGS----SQG--IGYALAEGLAQAGAEVILNG-RDPA---KL-AAAAESLKGQGLSAHALAFDVTDHDAVRA 76 (255)
T ss_pred CCCCEEEEECC----cch--HHHHHHHHHHHcCCEEEEEe-CCHH---HH-HHHHHHHHhcCceEEEEEccCCCHHHHHH
Confidence 36888777652 222 55688888999999987654 3221 11 123445544443322 112222232
Q ss_pred -------HhhccCEEEEechh
Q 023401 147 -------TALKADLIVLNTAV 160 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v 160 (282)
.....|.||.|...
T Consensus 77 ~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 77 AIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 12458999988765
No 338
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=37.33 E-value=1.7e+02 Score=28.55 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=39.0
Q ss_pred EEEEec-cCCCCCchHHHHHHHHHHHhCCCeEEEEe-ccCCCC---------chhhhhhhHHHHHHc--CCceeeh
Q 023401 77 VLLVSH-ELSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSE---------EDEVIYSLEHKMWDR--GVQVISA 139 (282)
Q Consensus 77 ILLISH-ELs~TGAPLlLleLA~~Lkq~G~~V~vL~-~~~G~~---------~~~v~~~L~~kll~r--gI~v~~~ 139 (282)
|+-|.. -.+.||-==+...||++|++.|..+.+++ +.||.. .+.-..+=|..++.+ +++|+-.
T Consensus 58 VIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~~~~~~~v~~~~~~~~~GDEpllla~~~~~~V~V~ 133 (338)
T PRK01906 58 VVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGAKIKHPTAVTPASRASDAGDEPLLIARRTDAPVWVC 133 (338)
T ss_pred EEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCCCCCCCeEEcCCCChhhhCcHHHHhhhcCCCeEEEe
Confidence 444442 23455665566789999999999999999 665420 011111335556655 7888755
No 339
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.33 E-value=44 Score=29.78 Aligned_cols=74 Identities=28% Similarity=0.343 Sum_probs=47.7
Q ss_pred eeeccccccc--------ccccccccccccccccchhhHHHHHHhhhhhcCCCCCCeeEEEecCcHHHHHHHHHHHHHHH
Q 023401 184 IHEMRGHYFK--------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRV 255 (282)
Q Consensus 184 IHE~r~~Yf~--------l~~vkhL~~v~~~~~dS~Ata~~w~~~~~~~l~Ikl~~~~vv~L~~~~~l~~~a~~~v~~~~ 255 (282)
||-...+|++ ++--+....|+++.|++-. -.+.-++|++|+|- +.....+.-.+--+..||+ .
T Consensus 19 IHa~a~GY~g~~~~~~~~~~l~~~V~vvaa~FiPtis-------GvrslL~i~pPEPd-~~~~~aKaY~EE~D~~VA~-m 89 (165)
T COG4016 19 IHAAAAGYEGFEFKYLFSLKLMKNVRVVAAMFIPTIS-------GVRSLLDIKPPEPD-FNYKYAKAYSEEKDLEVAK-M 89 (165)
T ss_pred HHHHhcCCCCchhhhheeeeeccceEEEEEeecchhH-------hHHHHhCCCCCCCC-cchhhhhhhhhhhhHHHHH-H
Confidence 5665556665 2223334455555555432 23456899999766 7787777777755557777 7
Q ss_pred HHHHHHHHhCC
Q 023401 256 LREHVRESLGV 266 (282)
Q Consensus 256 lre~vr~~lGl 266 (282)
+-+.|||..|.
T Consensus 90 MAr~vre~t~a 100 (165)
T COG4016 90 MARGVREKTNA 100 (165)
T ss_pred HHHHHHHHhCC
Confidence 88999998764
No 340
>PRK09620 hypothetical protein; Provisional
Probab=37.25 E-value=37 Score=31.06 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCeEEEEec
Q 023401 94 MELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~ 112 (282)
.++|+.|...|++|.++.+
T Consensus 33 s~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHG 51 (229)
T ss_pred HHHHHHHHHCCCeEEEEeC
Confidence 5889999999999999984
No 341
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=37.23 E-value=3.5e+02 Score=25.19 Aligned_cols=110 Identities=11% Similarity=0.139 Sum_probs=61.1
Q ss_pred CCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccCEEEEechhch---
Q 023401 86 LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAG--- 162 (282)
Q Consensus 86 ~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~DLVIaNT~v~g--- 162 (282)
.+||+..-......+.+.|++..-+........ .. ......+. +.+.....=|.|+.-+-.-.
T Consensus 14 ~~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~~~-~~-~~~~~~~~------------~~~~~~~~~Dvv~~~~P~~~~~~ 79 (333)
T PRK09814 14 NSAALKAKNDVTKIAKQLGFEELGIYFYNIKRD-SL-SERSKRLD------------GILASLKPGDIVIFQFPTWNGFE 79 (333)
T ss_pred cchHHHHHHHHHHHHHHCCCeEeEEEecccccc-hH-HHHHHHHH------------HHHhcCCCCCEEEEECCCCchHH
Confidence 348999999999999999999877764322100 00 00011111 11222333489988764322
Q ss_pred ---HHHHHHhhccCCCCCCceEEEeeeccccccc------------ccccccccccccccccchhhHHHHHHh
Q 023401 163 ---KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------------LDYVKHLPLVAGAMIDSHVTAEYWKNR 220 (282)
Q Consensus 163 ---~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~------------l~~vkhL~~v~~~~~dS~Ata~~w~~~ 220 (282)
..+..+.+.+ .|+|-.+||..-..+. +++.+.++.. |+.++++..++
T Consensus 80 ~~~~~~~~~k~~~-----~k~i~~ihD~~~~~~~~~~~~~~~~~~~~~~aD~iI~~------S~~~~~~l~~~ 141 (333)
T PRK09814 80 FDRLFVDKLKKKQ-----VKIIILIHDIEPLRFDSNYYLMKEEIDMLNLADVLIVH------SKKMKDRLVEE 141 (333)
T ss_pred HHHHHHHHHHHcC-----CEEEEEECCcHHHhccccchhhHHHHHHHHhCCEEEEC------CHHHHHHHHHc
Confidence 2223332212 3999999997622111 3344445555 99999988654
No 342
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=37.07 E-value=65 Score=28.64 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=30.2
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~ 108 (282)
-.+||+||+| .|.=.||+ -+.+..+.|++.|.+++
T Consensus 137 ~~~gk~VlIV-DDVitTG~--Tl~~ai~~l~~~Ga~~v 171 (200)
T PRK02277 137 SVEGKRCVIV-DDVITSGT--TMKETIEYLKEHGGKPV 171 (200)
T ss_pred cCCcCEEEEE-eeccCchH--HHHHHHHHHHHcCCEEE
Confidence 3689999999 88888898 78899999999998855
No 343
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=37.02 E-value=2.1e+02 Score=26.20 Aligned_cols=63 Identities=13% Similarity=0.239 Sum_probs=35.7
Q ss_pred CccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC-CchhhhhhhHHHHHHcCCceee
Q 023401 67 SPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDRGVQVIS 138 (282)
Q Consensus 67 ~~~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~-~~~~v~~~L~~kll~rgI~v~~ 138 (282)
+..+|++... .+++|.-|.+ +.+.....++.|-.+.++.....| .+|. -+.+++.+.|+++..
T Consensus 100 ~~~~~I~~~~-~ILT~~~S~~-----v~~~l~~a~~~~~~~~V~v~es~P~~eG~---~~a~~L~~~gi~v~~ 163 (282)
T PF01008_consen 100 HASELINDGD-TILTHGYSST-----VERFLLSAKKKGKKFRVIVLESRPYNEGR---LMAKELAEAGIPVTL 163 (282)
T ss_dssp HHHCCC-TTE-EEEEES--SH-----HHHHHHHHHHTTEEEEEEEE--TTTTHHH---THHHHHHHTT-EEEE
T ss_pred HHHHhccCCe-EEEEeCCchH-----HHHHHHHHHHcCCeEEEEEccCCcchhhh---hHHHHhhhcceeEEE
Confidence 4566776554 3445655555 455555677778777776644333 3442 467888889998863
No 344
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=37.02 E-value=2.4e+02 Score=26.41 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=61.0
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc---CCceeeh--hchhHHH----
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR---GVQVISA--KGQETIN---- 146 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r---gI~v~~~--k~~~~i~---- 146 (282)
+|++|.-.=+..|.+.+-..||.+|.+.|.+|.++-.. + .+..+. .+... .+.+... ...+.++
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D-~--~n~~~~----~~~~l~~~~~~i~~~~~i~~r~fD~Lve 75 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTD-P--VNATFE----GYKALNVRRLNIMDGDEINTRNFDALVE 75 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECC-C--CCchhh----hHHhcCCcceecccCCccchhhHHHHHH
Confidence 57777778899999999999999999999998777432 2 111111 22222 2222211 1112222
Q ss_pred -H-hhccCEEEEechhchHHHHHHhhc-cCC-----CCCCceEEEeeecc
Q 023401 147 -T-ALKADLIVLNTAVAGKWLDAVLKE-DVP-----RVLPNVLWWIHEMR 188 (282)
Q Consensus 147 -~-a~~~DLVIaNT~v~g~wl~~l~~~-~~~-----~~~~pVIWWIHE~r 188 (282)
. ..+-|+||-|++-+-.-+.+++.+ .++ .+-.=++||+-.--
T Consensus 76 ~i~~~~~dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~gg 125 (241)
T PRK13886 76 MIASTEGDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTGG 125 (241)
T ss_pred HHhccCCCEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEECCC
Confidence 1 245688999998665555444322 111 11235778886643
No 345
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=36.96 E-value=2e+02 Score=29.88 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=51.1
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC------------CchhhhhhhHHHHHHcCCceeehh
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS------------EEDEVIYSLEHKMWDRGVQVISAK 140 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~------------~~~~v~~~L~~kll~rgI~v~~~k 140 (282)
.||+|++|. |+| .=+..|..|++.|++|.++-...-. ...++.....+.+.+.|+.+....
T Consensus 309 ~~kkVaIIG------~Gp-aGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 309 RSEKVAVIG------AGP-AGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CCCEEEEEC------cCH-HHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 599999984 444 4556888899999998887633210 122333334566777788877543
Q ss_pred c---hhHHH-HhhccCEEEEechh
Q 023401 141 G---QETIN-TALKADLIVLNTAV 160 (282)
Q Consensus 141 ~---~~~i~-~a~~~DLVIaNT~v 160 (282)
. ..++. ....||.||..|-+
T Consensus 382 ~v~~~~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 382 EIGRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred ccCCcCCHHHHHhcCCEEEEeCCC
Confidence 1 11232 34579999998864
No 346
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=36.64 E-value=1e+02 Score=31.08 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHhCC-CeEEEEecc
Q 023401 89 GPLLLMELAFLLRGVG-TKVNWITIQ 113 (282)
Q Consensus 89 APLlLleLA~~Lkq~G-~~V~vL~~~ 113 (282)
-|+-|+.||-.|++.| ++|.++=..
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~ 46 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAM 46 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEeccc
Confidence 5999999999999999 799888533
No 347
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=36.55 E-value=1.2e+02 Score=27.06 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=38.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe--ccCCCCchhhhhhhHHHHHHcCCceeeh
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT--IQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~--~~~G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
-+|++||+|= |.=.||+ -+..+.+.+++.|.+|.-+. ...+.. +-.+++.+.|+++..-
T Consensus 115 ~~G~rVlIVD-DviaTGg--T~~a~~~lv~~aGa~vvgv~~lvd~~~~------~g~~~l~~~g~~~~sl 175 (189)
T PRK09219 115 SEGDRVLIID-DFLANGQ--AALGLIDIIEQAGAKVAGIGIVIEKSFQ------DGRKLLEEKGYRVESL 175 (189)
T ss_pred CCCCEEEEEe-ehhhcCh--HHHHHHHHHHHCCCEEEEEEEEEEccCc------cHHHHHHhcCCcEEEE
Confidence 3799998884 5666777 57788899999999955333 222210 1145666778887643
No 348
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=36.54 E-value=1.8e+02 Score=22.00 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=37.9
Q ss_pred cEEE-EEeccCCCCCchHHHHHHHHHHHhCC---CeEEEEeccCCC----C-------chhhhhhhHHHHHHcC-Cceee
Q 023401 75 KLVL-LVSHELSLSGGPLLLMELAFLLRGVG---TKVNWITIQKPS----E-------EDEVIYSLEHKMWDRG-VQVIS 138 (282)
Q Consensus 75 KkIL-LISHELs~TGAPLlLleLA~~Lkq~G---~~V~vL~~~~G~----~-------~~~v~~~L~~kll~rg-I~v~~ 138 (282)
|+|+ ++++.-+..-....-+.++......| .+|.++....|- . +..-...+..++.+.| +++.-
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv~~~~~~~~~~~~~~~~~~~~l~~l~~~g~v~i~~ 80 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDGVKLALKDQKPNPEGDPPLQELLKELKEAGGVKIYV 80 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGGGGGGBTTCHCGGCTSHCHHHHHHHHHHTTT-EEEE
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchHHHHHHhcccccccccccHHHHHHHHHhcCCcEEEE
Confidence 3444 44445555555678888888999999 999988855553 1 1112234555666666 77664
Q ss_pred h
Q 023401 139 A 139 (282)
Q Consensus 139 ~ 139 (282)
-
T Consensus 81 C 81 (122)
T PF02635_consen 81 C 81 (122)
T ss_dssp E
T ss_pred c
Confidence 3
No 349
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=36.50 E-value=2.4e+02 Score=28.36 Aligned_cols=102 Identities=20% Similarity=0.228 Sum_probs=55.9
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHH-hCCCeEEEEeccCCCCchhhhhhhHHHHHHcCC--ce-eehhchhHH
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV--QV-ISAKGQETI 145 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lk-q~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI--~v-~~~k~~~~i 145 (282)
.+.+||++.+. +|+|. +..+++.|. +.|.+++.+....+. .++ .++++..+. .+ +.+.....+
T Consensus 323 ~~L~GkrvaI~------~~~~~-~~~~~~~l~~ElGmevv~~~~~~~~-~~~-----~~~~~~~~~~~~i~i~d~~~~e~ 389 (461)
T TIGR01860 323 ERLQGKKMCIW------TGGPR-LWHWTKALEDDLGMQVVAMSSKFGH-QED-----FEKVIARGKEGTIYIDDGNELEF 389 (461)
T ss_pred HHcCCCEEEEE------CCCch-HHHHHHHHHHhCCCEEEEEeeecCC-HHH-----HHHHHHhcCCCeEEEeCCCHHHH
Confidence 56899999883 34443 466777887 799999887644332 111 233333322 23 334322222
Q ss_pred -H--HhhccCEEEEechhchHHHHHHhhccCCCCCCceEEEeeeccccccc
Q 023401 146 -N--TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK 193 (282)
Q Consensus 146 -~--~a~~~DLVIaNT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf~ 193 (282)
+ ...++|++|.|+-. +++. .|.++ |.+-..++-.+-|..
T Consensus 390 ~~~~~~~~pDliig~s~~--~~~A--~klgi-----P~vd~~~~~~~~~~G 431 (461)
T TIGR01860 390 FEVLDLIKPDVIFTGPRV--GELV--KKLHI-----PYVNGHGYHNGPYMG 431 (461)
T ss_pred HHHHHhcCCCEEEeCCcc--hhhH--hhcCC-----CEEecccccccCccc
Confidence 2 35679999999853 3332 12244 666555554444443
No 350
>PRK08862 short chain dehydrogenase; Provisional
Probab=36.49 E-value=2e+02 Score=25.29 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=42.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (282)
++||.+|+..- +.=+=.++|+.|.+.|+.|.+.... .+ .. ..+.+++...|.++. +....++++
T Consensus 3 ~~~k~~lVtGa------s~GIG~aia~~la~~G~~V~~~~r~-~~---~l-~~~~~~i~~~~~~~~~~~~D~~~~~~~~~ 71 (227)
T PRK08862 3 IKSSIILITSA------GSVLGRTISCHFARLGATLILCDQD-QS---AL-KDTYEQCSALTDNVYSFQLKDFSQESIRH 71 (227)
T ss_pred CCCeEEEEECC------ccHHHHHHHHHHHHCCCEEEEEcCC-HH---HH-HHHHHHHHhcCCCeEEEEccCCCHHHHHH
Confidence 46777776542 2224567889999999998776432 21 11 122344444443332 222233332
Q ss_pred -------Hhh-ccCEEEEech
Q 023401 147 -------TAL-KADLIVLNTA 159 (282)
Q Consensus 147 -------~a~-~~DLVIaNT~ 159 (282)
... .+|.+|.|..
T Consensus 72 ~~~~~~~~~g~~iD~li~nag 92 (227)
T PRK08862 72 LFDAIEQQFNRAPDVLVNNWT 92 (227)
T ss_pred HHHHHHHHhCCCCCEEEECCc
Confidence 234 7999998874
No 351
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=36.44 E-value=1.1e+02 Score=24.38 Aligned_cols=66 Identities=23% Similarity=0.229 Sum_probs=41.3
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh-h----chhHH-H--Hh
Q 023401 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-K----GQETI-N--TA 148 (282)
Q Consensus 77 ILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~-k----~~~~i-~--~a 148 (282)
|++.-||.+- =-++++|+.|.+.|+++.... | ..+-+.+.|+++-.- + +...+ + ..
T Consensus 2 i~isv~d~~K----~~~~~~a~~l~~~G~~i~AT~---g---------Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~ 65 (112)
T cd00532 2 VFLSVSDHVK----AMLVDLAPKLSSDGFPLFATG---G---------TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAE 65 (112)
T ss_pred EEEEEEcccH----HHHHHHHHHHHHCCCEEEECc---H---------HHHHHHHcCCceEEEEecCCCCCcHHHHHHhC
Confidence 4555565543 356799999999999986443 3 245556679886532 1 22222 2 36
Q ss_pred -hccCEEEEec
Q 023401 149 -LKADLIVLNT 158 (282)
Q Consensus 149 -~~~DLVIaNT 158 (282)
.++|+||...
T Consensus 66 ~g~idlVIn~~ 76 (112)
T cd00532 66 KGKFDVVINLR 76 (112)
T ss_pred CCCEEEEEEcC
Confidence 7899998743
No 352
>PRK07060 short chain dehydrogenase; Provisional
Probab=36.22 E-value=2.5e+02 Score=23.92 Aligned_cols=34 Identities=24% Similarity=0.139 Sum_probs=24.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
+++|++|+.. -+ --+=.++++.|.+.|++|.++.
T Consensus 7 ~~~~~~lItG----a~--g~iG~~~a~~l~~~g~~V~~~~ 40 (245)
T PRK07060 7 FSGKSVLVTG----AS--SGIGRACAVALAQRGARVVAAA 40 (245)
T ss_pred cCCCEEEEeC----Cc--chHHHHHHHHHHHCCCEEEEEe
Confidence 5778777642 22 3366788889999999977765
No 353
>PRK07035 short chain dehydrogenase; Provisional
Probab=35.94 E-value=2.1e+02 Score=24.73 Aligned_cols=78 Identities=18% Similarity=0.174 Sum_probs=42.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHH--
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETI-- 145 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~--~~k~~~~i-- 145 (282)
+++|++|+. .|+.-+=.++++.|.+.|..|+++..+ .. . ...+.+++.+.+..+ + +-...+++
T Consensus 6 l~~k~vlIt------Gas~gIG~~l~~~l~~~G~~Vi~~~r~-~~---~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 74 (252)
T PRK07035 6 LTGKIALVT------GASRGIGEAIAKLLAQQGAHVIVSSRK-LD---G-CQAVADAIVAAGGKAEALACHIGEMEQIDA 74 (252)
T ss_pred cCCCEEEEE------CCCcHHHHHHHHHHHHCCCEEEEEeCC-HH---H-HHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 567766554 233336678999999999998777632 21 1 123445555443222 1 11112222
Q ss_pred --H----HhhccCEEEEechh
Q 023401 146 --N----TALKADLIVLNTAV 160 (282)
Q Consensus 146 --~----~a~~~DLVIaNT~v 160 (282)
+ ...++|.||.|...
T Consensus 75 ~~~~~~~~~~~id~li~~ag~ 95 (252)
T PRK07035 75 LFAHIRERHGRLDILVNNAAA 95 (252)
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 2 23468999988753
No 354
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=35.87 E-value=1.2e+02 Score=30.30 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=39.5
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccC--CCCchhhhhhhHHHHHHcCCceeeh
Q 023401 88 GGPLLLMELAFLLRGVGTKVNWITIQK--PSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~--G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
|+-..-+|+|..|.+.|.+|.++.... +..+.++...+.+.|.++||.+...
T Consensus 187 GgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~ 240 (484)
T TIGR01438 187 GASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQ 240 (484)
T ss_pred CCCHHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeC
Confidence 555678999999999999999997421 1234566667788888889988754
No 355
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=35.79 E-value=2e+02 Score=27.32 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=40.8
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHh--CCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh--h------chhH
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRG--VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--K------GQET 144 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq--~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~--k------~~~~ 144 (282)
|-++|+|.+ |.- |-.|....++ .+++|+++.+++.+ +.....+.|||++.- + ....
T Consensus 91 ri~vl~Sg~----gsn--l~al~~~~~~~~~~~~i~~visn~~~--------~~~lA~~~gIp~~~~~~~~~~~~~~~~~ 156 (286)
T PRK06027 91 RVVILVSKE----DHC--LGDLLWRWRSGELPVEIAAVISNHDD--------LRSLVERFGIPFHHVPVTKETKAEAEAR 156 (286)
T ss_pred EEEEEEcCC----CCC--HHHHHHHHHcCCCCcEEEEEEEcChh--------HHHHHHHhCCCEEEeccCccccchhHHH
Confidence 788999988 442 2233333333 36888888766552 344466779999751 1 1111
Q ss_pred -HH--HhhccCEEEEe
Q 023401 145 -IN--TALKADLIVLN 157 (282)
Q Consensus 145 -i~--~a~~~DLVIaN 157 (282)
.+ ...++|+|++-
T Consensus 157 ~~~~l~~~~~Dlivla 172 (286)
T PRK06027 157 LLELIDEYQPDLVVLA 172 (286)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 12 35679999864
No 356
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.76 E-value=1.9e+02 Score=25.60 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=24.4
Q ss_pred cccccccEEEEEeccCCCCCch---HHHHHHHHHHHhCCCeEEEEe
Q 023401 69 LSFMKSKLVLLVSHELSLSGGP---LLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAP---LlLleLA~~Lkq~G~~V~vL~ 111 (282)
..-++||.+|+. ||. =.=.++|+.|.+.|+.|++..
T Consensus 5 ~~~~~~k~~lIt-------Gas~g~GIG~a~a~~la~~G~~v~l~~ 43 (258)
T PRK07533 5 LLPLAGKRGLVV-------GIANEQSIAWGCARAFRALGAELAVTY 43 (258)
T ss_pred ccccCCCEEEEE-------CCCCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 334678866553 322 244788999999999987765
No 357
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=35.68 E-value=96 Score=32.03 Aligned_cols=84 Identities=23% Similarity=0.202 Sum_probs=57.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcC-Cceeehh------chhH
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG-VQVISAK------GQET 144 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rg-I~v~~~k------~~~~ 144 (282)
.+|.+|..--|=---|+ -|++-|+..|++|.|-.++-.+..|++... +.+.| |+|+--+ +...
T Consensus 43 l~G~ri~~~lh~~~~Ta------~l~~tL~~~GA~v~~~~~n~~stqD~~aaa----l~~~g~i~vfa~~g~t~eey~~~ 112 (476)
T PTZ00075 43 LKGARITGCLHMTVQTA------VLIETLKALGAEVRWCSCNIFSTQDHAAAA----IAKAGSVPVFAWKGETLEEYWWC 112 (476)
T ss_pred CCCCEEEEEEcchHHHH------HHHHHHHHcCCEEEEEcCCCCccccHHHHH----HHhcCCeEEEEecCCCHHHHHHH
Confidence 47888888888444343 466789999999999998767778888444 44568 9999433 3333
Q ss_pred HHHhh------ccCEEEEechhchHHH
Q 023401 145 INTAL------KADLIVLNTAVAGKWL 165 (282)
Q Consensus 145 i~~a~------~~DLVIaNT~v~g~wl 165 (282)
+..+. ++|+|+=+-.-....+
T Consensus 113 ~~~~l~~~~~~~p~~i~DdG~dl~~~~ 139 (476)
T PTZ00075 113 TEQALKWPNGDGPNLIVDDGGDATLLV 139 (476)
T ss_pred HHHHHhccCCCCCCEEEECCcHHHHHH
Confidence 43332 5899988766544433
No 358
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=35.60 E-value=2.5e+02 Score=27.47 Aligned_cols=82 Identities=13% Similarity=0.081 Sum_probs=47.4
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhc
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~ 150 (282)
-.+|++|.+|++--+ + +.-.++..+...|.+|.+.+-++=...++++...++...+.|..+...... -....+
T Consensus 152 ~l~g~~va~vGd~~~--~---v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~--~ea~~~ 224 (331)
T PRK02102 152 PLKGLKLAYVGDGRN--N---MANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDP--EEAVKG 224 (331)
T ss_pred CCCCCEEEEECCCcc--c---HHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCH--HHHhCC
Confidence 368999999985533 3 445555566677999999883322122333322333334457554321111 125678
Q ss_pred cCEEEEech
Q 023401 151 ADLIVLNTA 159 (282)
Q Consensus 151 ~DLVIaNT~ 159 (282)
+|.|++.+.
T Consensus 225 aDvvyt~~w 233 (331)
T PRK02102 225 ADVIYTDVW 233 (331)
T ss_pred CCEEEEcCc
Confidence 999999754
No 359
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=35.56 E-value=1.2e+02 Score=26.51 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=46.5
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEEeccCCC-CchhhhhhhHHHHHHc-CCceeehhchhHHH-----HhhccCEEEEech
Q 023401 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDR-GVQVISAKGQETIN-----TALKADLIVLNTA 159 (282)
Q Consensus 87 TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~-~~~~v~~~L~~kll~r-gI~v~~~k~~~~i~-----~a~~~DLVIaNT~ 159 (282)
.+-| .++|+.+++.|++-.-+....+. .+......+..++.+. ++|+.-.-+.++.+ ....+|.|+++|.
T Consensus 28 ~~dp---~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~ 104 (234)
T cd04732 28 SDDP---VEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTA 104 (234)
T ss_pred CCCH---HHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECch
Confidence 3555 46788898999886666522222 1122333455666554 67777654333322 2344999999998
Q ss_pred hchH--HHHHHh
Q 023401 160 VAGK--WLDAVL 169 (282)
Q Consensus 160 v~g~--wl~~l~ 169 (282)
.... ++.++.
T Consensus 105 ~l~dp~~~~~i~ 116 (234)
T cd04732 105 AVKNPELVKELL 116 (234)
T ss_pred HHhChHHHHHHH
Confidence 7643 455554
No 360
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=35.53 E-value=2.2e+02 Score=24.19 Aligned_cols=79 Identities=13% Similarity=0.168 Sum_probs=43.7
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc--eee-h-hchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VIS-A-KGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~--v~~-~-k~~~~i~- 146 (282)
+++|+||+... .-.+=.++++.|.+.|++|.++... .+ .. ..+.+++...+.. .+. | ....++.
T Consensus 4 ~~~~~ilItGa------sg~iG~~l~~~l~~~g~~V~~~~r~-~~---~~-~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~ 72 (251)
T PRK12826 4 LEGRVALVTGA------ARGIGRAIAVRLAADGAEVIVVDIC-GD---DA-AATAELVEAAGGKARARQVDVRDRAALKA 72 (251)
T ss_pred CCCCEEEEcCC------CCcHHHHHHHHHHHCCCEEEEEeCC-HH---HH-HHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 56788887542 2235678889999999998777633 21 11 1234445444422 221 1 1122222
Q ss_pred -------HhhccCEEEEechhc
Q 023401 147 -------TALKADLIVLNTAVA 161 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v~ 161 (282)
...++|.||.|+...
T Consensus 73 ~~~~~~~~~~~~d~vi~~ag~~ 94 (251)
T PRK12826 73 AVAAGVEDFGRLDILVANAGIF 94 (251)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 224689999987543
No 361
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=35.46 E-value=4.1e+02 Score=25.51 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhC-CCeEEEEe-ccCCCCchhhhhhhHHHHHHcCCcee--------ehhch----------hHHH---H
Q 023401 91 LLLMELAFLLRGV-GTKVNWIT-IQKPSEEDEVIYSLEHKMWDRGVQVI--------SAKGQ----------ETIN---T 147 (282)
Q Consensus 91 LlLleLA~~Lkq~-G~~V~vL~-~~~G~~~~~v~~~L~~kll~rgI~v~--------~~k~~----------~~i~---~ 147 (282)
+-|.-+.+.|++. +.+++++. +++-++ +. ......+.+.|.++. .+.++ ..+. .
T Consensus 14 iklapv~~~l~~~~~~~~~lv~tGqH~~~--~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (365)
T TIGR03568 14 GLLRPLLKALQDDPDLELQLIVTGMHLSP--EY-GNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSMGLTIIGFSDAFE 90 (365)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCCCh--hh-ccHHHHHHHcCCCCCCccccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4456677888874 78877776 665421 11 012344444443221 11111 1111 3
Q ss_pred hhccCEEEE----echhchHHHHHHhhccCCCCCCceEEEeeecccccc--c------ccccccccccccccccchhhHH
Q 023401 148 ALKADLIVL----NTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--K------LDYVKHLPLVAGAMIDSHVTAE 215 (282)
Q Consensus 148 a~~~DLVIa----NT~v~g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Yf--~------l~~vkhL~~v~~~~~dS~Ata~ 215 (282)
..+.|+|++ ||..++.....++ +. ||+ +||+..+.|- + .++..|+.|+ +...+.
T Consensus 91 ~~~Pd~vlv~GD~~~~la~alaA~~~--~I-----Pv~-HveaG~rs~~~~eE~~r~~i~~la~l~f~------~t~~~~ 156 (365)
T TIGR03568 91 RLKPDLVVVLGDRFEMLAAAIAAALL--NI-----PIA-HIHGGEVTEGAIDESIRHAITKLSHLHFV------ATEEYR 156 (365)
T ss_pred HhCCCEEEEeCCchHHHHHHHHHHHh--CC-----cEE-EEECCccCCCCchHHHHHHHHHHHhhccC------CCHHHH
Confidence 556899986 4455555555443 33 554 8898865441 1 2344455555 443332
Q ss_pred HHHHhhhhhcCCCCCCeeEEEecCc--HHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CEEEEEe
Q 023401 216 YWKNRTRERLRIKMPDTYVVHLGNS--KELMEVAEDNVAKRVLREHVRESLGVRNE-DLLFAII 276 (282)
Q Consensus 216 ~w~~~~~~~l~Ikl~~~~vv~L~~~--~~l~~~a~~~v~~~~lre~vr~~lGl~~d-d~lv~~~ 276 (282)
.--.+. ++. +..|+..|+. |++.... . ..++.+++++|++.+ ..++.+.
T Consensus 157 ~~L~~e----g~~--~~~i~~tG~~~iD~l~~~~-----~-~~~~~~~~~lgl~~~~~~vlvt~ 208 (365)
T TIGR03568 157 QRVIQM----GED--PDRVFNVGSPGLDNILSLD-----L-LSKEELEEKLGIDLDKPYALVTF 208 (365)
T ss_pred HHHHHc----CCC--CCcEEEECCcHHHHHHhhh-----c-cCHHHHHHHhCCCCCCCEEEEEe
Confidence 222222 222 2344555543 4444321 1 245788899999743 5655444
No 362
>PRK06198 short chain dehydrogenase; Provisional
Probab=35.45 E-value=1.9e+02 Score=25.02 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=44.3
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHH-
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETI- 145 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~--~~k~~~~i- 145 (282)
.+++|+|+++. -+|+ +=..+++.|.+.|.+.++++.+..+.. ..+.+++...+-.+ + +-....++
T Consensus 3 ~~~~k~vlItG----a~g~--iG~~la~~l~~~G~~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~D~~~~~~~~ 72 (260)
T PRK06198 3 RLDGKVALVTG----GTQG--LGAAIARAFAERGAAGLVICGRNAEKG----EAQAAELEALGAKAVFVQADLSDVEDCR 72 (260)
T ss_pred CCCCcEEEEeC----CCch--HHHHHHHHHHHCCCCeEEEEcCCHHHH----HHHHHHHHhcCCeEEEEEccCCCHHHHH
Confidence 36788888765 2333 667888899999999444454433211 12344554444332 1 11222222
Q ss_pred ---H----HhhccCEEEEechhc
Q 023401 146 ---N----TALKADLIVLNTAVA 161 (282)
Q Consensus 146 ---~----~a~~~DLVIaNT~v~ 161 (282)
+ ....+|.||.|....
T Consensus 73 ~~~~~~~~~~g~id~li~~ag~~ 95 (260)
T PRK06198 73 RVVAAADEAFGRLDALVNAAGLT 95 (260)
T ss_pred HHHHHHHHHhCCCCEEEECCCcC
Confidence 2 124689999887653
No 363
>PLN02494 adenosylhomocysteinase
Probab=35.41 E-value=99 Score=31.96 Aligned_cols=78 Identities=23% Similarity=0.224 Sum_probs=53.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc------hhHH
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------QETI 145 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~------~~~i 145 (282)
.+|.+|-.--|==--|+ .|++-|+..|++|.|-+++-.+..|++...| .+.||+|+--++ ...+
T Consensus 44 l~G~~i~~~lHl~~kTa------~L~~tL~~~GA~v~~~~~Np~sTqd~vaaal----~~~gi~vfa~~g~~~~ey~~~~ 113 (477)
T PLN02494 44 FKGARITGSLHMTIQTA------VLIETLTALGAEVRWCSCNIFSTQDHAAAAI----ARDSAAVFAWKGETLQEYWWCT 113 (477)
T ss_pred CCCCEEEEEEechHHHH------HHHHHHHHcCCEEEEEcCCCccchHHHHHHH----HhCCceEEEecCCCHHHHHHHH
Confidence 46888888777433332 4778899999999999988777888885544 457999995543 2333
Q ss_pred HHhhc------cCEEEEech
Q 023401 146 NTALK------ADLIVLNTA 159 (282)
Q Consensus 146 ~~a~~------~DLVIaNT~ 159 (282)
..+.+ .|+|+=+-.
T Consensus 114 ~~~l~~~~~~~p~~i~DDG~ 133 (477)
T PLN02494 114 ERALDWGPGGGPDLIVDDGG 133 (477)
T ss_pred HHHHcCCCCCCCCEEEeCCc
Confidence 33322 778876654
No 364
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=35.41 E-value=2.9e+02 Score=27.31 Aligned_cols=86 Identities=14% Similarity=0.022 Sum_probs=46.4
Q ss_pred ccccEEEEEec-cCCCC-CchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhh
Q 023401 72 MKSKLVLLVSH-ELSLS-GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL 149 (282)
Q Consensus 72 ~~~KkILLISH-ELs~T-GAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~ 149 (282)
.+|++|.++.. +++.. +. -+.-.++..+...|.+|.+.+-++-...++++.-.++...+.|..+.... ..-+...
T Consensus 168 l~g~kvai~~~~d~~~gr~~-~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~--d~~ea~~ 244 (357)
T TIGR03316 168 LKGKKFAMTWAYSPSYGKPL-SVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVN--SMDEAFK 244 (357)
T ss_pred cCCCEEEEEeccccccCccc-hHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEc--CHHHHhC
Confidence 46889999874 33322 22 22334555556679999888843221223332222233344575543211 1113567
Q ss_pred ccCEEEEechh
Q 023401 150 KADLIVLNTAV 160 (282)
Q Consensus 150 ~~DLVIaNT~v 160 (282)
++|.|+..+-.
T Consensus 245 ~aDvvyt~~w~ 255 (357)
T TIGR03316 245 DADIVYPKSWA 255 (357)
T ss_pred CCCEEEECCee
Confidence 89999998754
No 365
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=35.28 E-value=90 Score=28.80 Aligned_cols=80 Identities=14% Similarity=0.129 Sum_probs=42.6
Q ss_pred ccEEEEEeccCCC-C--CchH-HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehhchhHH---
Q 023401 74 SKLVLLVSHELSL-S--GGPL-LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAKGQETI--- 145 (282)
Q Consensus 74 ~KkILLISHELs~-T--GAPL-lLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r-gI~v~~~k~~~~i--- 145 (282)
+|.++.|.+-.+. . -=|. -.-+|++.|.+.|.+++++. |+++.+. .+++.+. +-.++.--+..++
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G---~~~e~~~----~~~i~~~~~~~~~~l~g~~sL~el 245 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFG---SAKDHPA----GNEIEALLPGELRNLAGETSLDEA 245 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEE---ChhhHHH----HHHHHHhCCcccccCCCCCCHHHH
Confidence 5667777664431 1 2232 34489999988898877664 3322233 2333322 1122211222222
Q ss_pred -HHhhccCEEEEechh
Q 023401 146 -NTALKADLIVLNTAV 160 (282)
Q Consensus 146 -~~a~~~DLVIaNT~v 160 (282)
.....+|++|.|=-.
T Consensus 246 ~ali~~a~l~I~~DSG 261 (334)
T TIGR02195 246 VDLIALAKAVVTNDSG 261 (334)
T ss_pred HHHHHhCCEEEeeCCH
Confidence 357789999999553
No 366
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=35.17 E-value=1.7e+02 Score=28.28 Aligned_cols=86 Identities=21% Similarity=0.212 Sum_probs=48.9
Q ss_pred EEEEec-cCCCCCchHHHHHHHHHHHhCCCeEEEEe-ccCCCCch----------hhhhhhHHHHHHc--CCceeehh-c
Q 023401 77 VLLVSH-ELSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSEED----------EVIYSLEHKMWDR--GVQVISAK-G 141 (282)
Q Consensus 77 ILLISH-ELs~TGAPLlLleLA~~Lkq~G~~V~vL~-~~~G~~~~----------~v~~~L~~kll~r--gI~v~~~k-~ 141 (282)
|+-|+. -.+.||-==+...|+++|++.|..+.+++ +.||...+ .-..+=|.-++.+ +++|+-.+ .
T Consensus 37 VIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR 116 (326)
T PF02606_consen 37 VISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLPVPVIVGPDR 116 (326)
T ss_pred EEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcCCcEEEeCcH
Confidence 444442 23456666677889999999999999999 66553111 1112335555555 34466442 2
Q ss_pred hhHHHH---hhccCEEEEechhch
Q 023401 142 QETINT---ALKADLIVLNTAVAG 162 (282)
Q Consensus 142 ~~~i~~---a~~~DLVIaNT~v~g 162 (282)
.+.++. ...+|+||..=.--.
T Consensus 117 ~~~~~~~~~~~~~dviilDDGfQh 140 (326)
T PF02606_consen 117 VAAARAALKEFPADVIILDDGFQH 140 (326)
T ss_pred HHHHHHHHHHCCCCEEEEcCCccc
Confidence 333432 223688887655433
No 367
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=35.17 E-value=70 Score=23.86 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=30.1
Q ss_pred ccCCCCchhhh-hhhHHHHHHcCCceeehhch-hHH-HHhhccCEEEEechhch
Q 023401 112 IQKPSEEDEVI-YSLEHKMWDRGVQVISAKGQ-ETI-NTALKADLIVLNTAVAG 162 (282)
Q Consensus 112 ~~~G~~~~~v~-~~L~~kll~rgI~v~~~k~~-~~i-~~a~~~DLVIaNT~v~g 162 (282)
|..|-.++-+. .-+++.+.++|+++...... ... ....++|+|+.-.-+..
T Consensus 6 C~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~~~~~~~~~D~il~~~~i~~ 59 (90)
T PF02302_consen 6 CGSGIGTSLMVANKIKKALKELGIEVEVSAGSILEVEEIADDADLILLTPQIAY 59 (90)
T ss_dssp ESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETTTHHHHHTT-SEEEEEESSGG
T ss_pred CCChHHHHHHHHHHHHHHHHhccCceEEEEecccccccccCCCcEEEEcCccch
Confidence 44454455555 55666677778777654333 122 24567999998887665
No 368
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=35.14 E-value=1.2e+02 Score=27.03 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCC-CchhhhhhhHHHHHHc-CCceeehhchhHHH-----HhhccCEEEEechhc--h
Q 023401 92 LLMELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDR-GVQVISAKGQETIN-----TALKADLIVLNTAVA--G 162 (282)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~-~~~~v~~~L~~kll~r-gI~v~~~k~~~~i~-----~a~~~DLVIaNT~v~--g 162 (282)
-..++|+.|.+.|.+-..++.-.+. ........+..++.+. ++|++-.-+.++.+ ....+|.|++||..- -
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p 107 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVENP 107 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhCh
Confidence 4568899999999996666633222 2333344566666664 78888775555443 123599999999864 2
Q ss_pred HHHHHHh
Q 023401 163 KWLDAVL 169 (282)
Q Consensus 163 ~wl~~l~ 169 (282)
.++.++.
T Consensus 108 ~~~~~i~ 114 (243)
T cd04731 108 ELIREIA 114 (243)
T ss_pred HHHHHHH
Confidence 4555554
No 369
>PRK12746 short chain dehydrogenase; Provisional
Probab=35.09 E-value=1.9e+02 Score=24.93 Aligned_cols=36 Identities=19% Similarity=0.114 Sum_probs=25.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
|++|+|++.+ -+| -+=.++|+.|.+.|..|.++..+
T Consensus 4 ~~~~~ilItG----asg--~iG~~la~~l~~~G~~v~i~~~r 39 (254)
T PRK12746 4 LDGKVALVTG----ASR--GIGRAIAMRLANDGALVAIHYGR 39 (254)
T ss_pred CCCCEEEEeC----CCc--hHHHHHHHHHHHCCCEEEEEcCC
Confidence 4567777655 223 36678899999999998776544
No 370
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=35.03 E-value=43 Score=26.64 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=7.4
Q ss_pred HHHHHHHHhCCCeEEEEe
Q 023401 94 MELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 94 leLA~~Lkq~G~~V~vL~ 111 (282)
..+++.|++.|.+|.+++
T Consensus 109 ~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 109 APLVRKLRERGKRVIVVG 126 (146)
T ss_dssp HHHHHHHHHH--EEEEEE
T ss_pred HHHHHHHHHcCCEEEEEE
Confidence 344444444444444444
No 371
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=34.85 E-value=2.6e+02 Score=27.30 Aligned_cols=83 Identities=10% Similarity=-0.006 Sum_probs=48.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhcc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~ 151 (282)
.+|++|.+|++-.++ . .-.++..+...|.+|.+.+-++=....+++...++...+.|..+...... -+....+
T Consensus 154 l~gl~va~vGD~~~~--v---~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~--~~a~~~a 226 (334)
T PRK12562 154 FNEMTLVYAGDARNN--M---GNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDI--AAGVKGA 226 (334)
T ss_pred cCCcEEEEECCCCCC--H---HHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCH--HHHhCCC
Confidence 578999999965443 3 33344445556999998884322123344333444445567554322111 1356789
Q ss_pred CEEEEechhc
Q 023401 152 DLIVLNTAVA 161 (282)
Q Consensus 152 DLVIaNT~v~ 161 (282)
|.|+..+.++
T Consensus 227 Dvvyt~~w~s 236 (334)
T PRK12562 227 DFIYTDVWVS 236 (334)
T ss_pred CEEEEcCccc
Confidence 9999998753
No 372
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.68 E-value=3e+02 Score=24.34 Aligned_cols=35 Identities=14% Similarity=-0.015 Sum_probs=18.6
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 77 ILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
|-+|.++.+..--.-++-.+.+.+++.|+++..+.
T Consensus 2 i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 36 (294)
T cd06316 2 AAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVATT 36 (294)
T ss_pred eEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEec
Confidence 45555554322112244455577777888776543
No 373
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=34.59 E-value=1.4e+02 Score=23.16 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=24.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEE
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL 110 (282)
-+++.|++... +|.+......+..|++.|+++.+|
T Consensus 62 ~~~~~vvvyc~----~g~~~~s~~~a~~l~~~G~~v~~l 96 (110)
T cd01521 62 DKEKLFVVYCD----GPGCNGATKAALKLAELGFPVKEM 96 (110)
T ss_pred CCCCeEEEEEC----CCCCchHHHHHHHHHHcCCeEEEe
Confidence 35778888864 333344566788899999986544
No 374
>PRK08628 short chain dehydrogenase; Provisional
Probab=34.54 E-value=2.3e+02 Score=24.50 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=44.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~--~~k~~~~i~- 146 (282)
|+||++|++. -+|+ +=.++|+.|.+.|+.|.++... .+. . .+.+++...|-++ + +-...+++.
T Consensus 5 l~~~~ilItG----asgg--iG~~la~~l~~~G~~v~~~~r~-~~~---~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (258)
T PRK08628 5 LKDKVVIVTG----GASG--IGAAISLRLAEEGAIPVIFGRS-APD---D--EFAEELRALQPRAEFVQVDLTDDAQCRD 72 (258)
T ss_pred cCCCEEEEeC----CCCh--HHHHHHHHHHHcCCcEEEEcCC-hhh---H--HHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 6788777754 2333 6678999999999998777533 221 1 3345554444332 2 112222222
Q ss_pred -------HhhccCEEEEechh
Q 023401 147 -------TALKADLIVLNTAV 160 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v 160 (282)
....+|.||.|...
T Consensus 73 ~~~~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 73 AVEQTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred HHHHHHHhcCCCCEEEECCcc
Confidence 12368999998764
No 375
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=34.49 E-value=1.3e+02 Score=29.92 Aligned_cols=55 Identities=22% Similarity=0.097 Sum_probs=36.2
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD 131 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~ 131 (282)
|..+|++|-|..--=|=++-+++.|...|.+|.+..+..+. =+++++.....++.
T Consensus 200 K~~lif~DNSG~DvILGilPf~Rellr~gt~vil~ans~pa-lNdvt~~el~~l~~ 254 (348)
T KOG4584|consen 200 KCALIFVDNSGFDVILGILPFARELLRRGTEVILCANSSPA-LNDVTYSELKELAA 254 (348)
T ss_pred ceEEEEecCCCcceeeeecHHHHHHHhCCCeEEEEecCcch-hccccHHHHHHHHH
Confidence 46788887554433333577889999999999998877554 34455554444443
No 376
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=34.34 E-value=74 Score=26.11 Aligned_cols=36 Identities=28% Similarity=0.253 Sum_probs=29.1
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
+.-++|+||. |..+|.+.--++.-|+++|.+|..+.
T Consensus 40 ~~~VvVg~D~-R~~s~~~~~~~~~~l~~~G~~V~~~g 75 (137)
T PF02878_consen 40 GSRVVVGRDT-RPSSPMLAKALAAGLRANGVDVIDIG 75 (137)
T ss_dssp SSEEEEEE-S-STTHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCeEEEEEcc-cCCHHHHHHHHHHHHhhccccccccc
Confidence 5678999995 55667788889999999999999876
No 377
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=34.17 E-value=98 Score=31.03 Aligned_cols=89 Identities=17% Similarity=0.085 Sum_probs=53.1
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc----CCceeeh--hchh
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR----GVQVISA--KGQE 143 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r----gI~v~~~--k~~~ 143 (282)
..-+++.-++|++.++.|.-=+-.++..+.....+.+|.+=.+.+++.+ +-+.-+++.-.+. .++++.+ .-.+
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~-~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~e 258 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQ-AYIQQVIQAGKELFGAENFQILTEFMPFDE 258 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchH-HHHHHHHHHHHHhcCccceeEhhhhCCHHH
Confidence 4456788999999999999998888866655555666666667765311 2222233333332 1233322 1222
Q ss_pred HHHHhhccCEEEEech
Q 023401 144 TINTALKADLIVLNTA 159 (282)
Q Consensus 144 ~i~~a~~~DLVIaNT~ 159 (282)
=++.+.+.|+.|.|-.
T Consensus 259 Yl~lL~~cDl~if~~~ 274 (360)
T PF07429_consen 259 YLALLSRCDLGIFNHN 274 (360)
T ss_pred HHHHHHhCCEEEEeec
Confidence 2335777888887743
No 378
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=34.01 E-value=2.3e+02 Score=27.58 Aligned_cols=81 Identities=9% Similarity=0.053 Sum_probs=45.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhcc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~ 151 (282)
.+|++|.+|++-.+. +.-.++..+...|.+|.+.+-++=...++++.-.++...+.|..+..... --+...++
T Consensus 154 l~gl~ia~vGD~~~~-----v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d--~~~a~~~a 226 (334)
T PRK01713 154 LSEISYVYIGDARNN-----MGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDD--IDKAVKGV 226 (334)
T ss_pred cCCcEEEEECCCccC-----HHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcC--HHHHhCCC
Confidence 679999999964342 23334444555699999877322112233332333333445755432111 11356789
Q ss_pred CEEEEech
Q 023401 152 DLIVLNTA 159 (282)
Q Consensus 152 DLVIaNT~ 159 (282)
|.|++.+.
T Consensus 227 DvVyt~~w 234 (334)
T PRK01713 227 DFVHTDVW 234 (334)
T ss_pred CEEEEcce
Confidence 99999754
No 379
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.91 E-value=2.3e+02 Score=27.44 Aligned_cols=83 Identities=22% Similarity=0.214 Sum_probs=48.5
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccC
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~D 152 (282)
.+|+|+++. ++.+|= ..+++|++.|++|...=.+.. . ...+++ +.|++++...... +....+|
T Consensus 5 ~~~~i~v~G--~G~sG~-----s~~~~l~~~G~~v~~~D~~~~---~----~~~~~l-~~g~~~~~~~~~~--~~~~~~d 67 (438)
T PRK03806 5 QGKKVVIIG--LGLTGL-----SCVDFFLARGVTPRVIDTRIT---P----PGLDKL-PENVERHTGSLND--EWLLAAD 67 (438)
T ss_pred CCCEEEEEe--eCHHHH-----HHHHHHHHCCCeEEEEcCCCC---c----hhHHHH-hcCCEEEeCCCCH--HHhcCCC
Confidence 478898887 555553 333568899998755322211 1 112344 4499887632221 1235689
Q ss_pred EEEEechhc--hHHHHHHhhcc
Q 023401 153 LIVLNTAVA--GKWLDAVLKED 172 (282)
Q Consensus 153 LVIaNT~v~--g~wl~~l~~~~ 172 (282)
+||+...+. .+++.+..+..
T Consensus 68 ~vv~spgi~~~~~~~~~a~~~g 89 (438)
T PRK03806 68 LIVASPGIALAHPSLSAAADAG 89 (438)
T ss_pred EEEECCCCCCCCHHHHHHHHCC
Confidence 999988875 34555554333
No 380
>PRK12747 short chain dehydrogenase; Provisional
Probab=33.89 E-value=1.9e+02 Score=24.98 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=25.7
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
|+++|++|+.. |+.=+=.++|+.|.+.|+.|.+...+
T Consensus 1 ~~~~k~~lItG------as~gIG~~ia~~l~~~G~~v~~~~~~ 37 (252)
T PRK12747 1 MLKGKVALVTG------ASRGIGRAIAKRLANDGALVAIHYGN 37 (252)
T ss_pred CCCCCEEEEeC------CCChHHHHHHHHHHHCCCeEEEEcCC
Confidence 46788776654 22235568899999999998776533
No 381
>PLN02256 arogenate dehydrogenase
Probab=33.80 E-value=1.2e+02 Score=28.90 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=40.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhcc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~ 151 (282)
+++++|.+|+ ++.-|+ .+|..|++.|.+|...... .. .+...+.|+....+ .++. ...++
T Consensus 34 ~~~~kI~IIG--~G~mG~-----slA~~L~~~G~~V~~~d~~-~~---------~~~a~~~gv~~~~~--~~e~-~~~~a 93 (304)
T PLN02256 34 SRKLKIGIVG--FGNFGQ-----FLAKTFVKQGHTVLATSRS-DY---------SDIAAELGVSFFRD--PDDF-CEEHP 93 (304)
T ss_pred CCCCEEEEEe--eCHHHH-----HHHHHHHhCCCEEEEEECc-cH---------HHHHHHcCCeeeCC--HHHH-hhCCC
Confidence 4778999998 555555 4677788889887766532 10 23334456654332 1111 02358
Q ss_pred CEEEEechh
Q 023401 152 DLIVLNTAV 160 (282)
Q Consensus 152 DLVIaNT~v 160 (282)
|+||..|=.
T Consensus 94 DvVilavp~ 102 (304)
T PLN02256 94 DVVLLCTSI 102 (304)
T ss_pred CEEEEecCH
Confidence 888887654
No 382
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=33.64 E-value=1.7e+02 Score=23.82 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=42.5
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhC--CCeEEEEeccCCCCchhhhhhhHHHHHH-cCCceeehh-----chhHH-H
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWD-RGVQVISAK-----GQETI-N 146 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~--G~~V~vL~~~~G~~~~~v~~~L~~kll~-rgI~v~~~k-----~~~~i-~ 146 (282)
+|.||.||-+-. -+.++|+.+.+. |++++... | ..+-+.+ .|+++..-+ +...+ +
T Consensus 1 ~~~l~a~d~dK~----~~~~~a~~~~~ll~Gf~i~AT~---g---------Ta~~L~~~~Gi~v~~vk~~~~~g~~~i~~ 64 (115)
T cd01422 1 RIALIAHDNKKE----DLVEFVKQHQELLSRHRLVATG---T---------TGLLIQEATGLTVNRMKSGPLGGDQQIGA 64 (115)
T ss_pred CEeEEecccchH----HHHHHHHHHHHHhcCCEEEEec---h---------HHHHHHHhhCCcEEEEecCCCCchhHHHH
Confidence 377889988753 566999999999 99987544 3 2344555 688654222 22222 2
Q ss_pred --HhhccCEEEEech
Q 023401 147 --TALKADLIVLNTA 159 (282)
Q Consensus 147 --~a~~~DLVIaNT~ 159 (282)
...++|+|| ||.
T Consensus 65 ~i~~g~i~~VI-nt~ 78 (115)
T cd01422 65 LIAEGEIDAVI-FFR 78 (115)
T ss_pred HHHcCceeEEE-EcC
Confidence 467799885 443
No 383
>PRK11595 DNA utilization protein GntX; Provisional
Probab=33.23 E-value=69 Score=28.89 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=28.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~ 108 (282)
++||+||+| .|.-.||+ -|.+.++.|++.|...+
T Consensus 185 ~~~~~vllv-DDv~tTG~--Tl~~~~~~L~~~g~~~V 218 (227)
T PRK11595 185 VQGQHMAIV-DDVVTTGS--TVAEIAQLLLRNGAASV 218 (227)
T ss_pred CCCCEEEEE-eeeecchH--HHHHHHHHHHHcCCcEE
Confidence 578887665 78888999 88999999999997643
No 384
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=32.96 E-value=88 Score=31.70 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh--hchhHHHH--hhccCEEEEec
Q 023401 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--KGQETINT--ALKADLIVLNT 158 (282)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~--k~~~~i~~--a~~~DLVIaNT 158 (282)
+=-++|+.|++.|++++++-.+ . + ..+++.+.|.+++.. ...+..+. ..++|.|++.|
T Consensus 428 ~G~~la~~L~~~g~~vvvId~d-~---~-----~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~ 489 (558)
T PRK10669 428 VGSLLGEKLLAAGIPLVVIETS-R---T-----RVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTI 489 (558)
T ss_pred HHHHHHHHHHHCCCCEEEEECC-H---H-----HHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEc
Confidence 4457999999999999887632 2 1 246667789988844 33444442 56899888754
No 385
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=32.91 E-value=27 Score=35.79 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=14.9
Q ss_pred HHHHhCCCCCCEEEEEecccc
Q 023401 260 VRESLGVRNEDLLFAIINRHR 280 (282)
Q Consensus 260 vr~~lGl~~dd~lv~~~~s~~ 280 (282)
-|+++|||+|+++||.+|+..
T Consensus 275 ~R~~~gLp~d~vvF~~fn~~~ 295 (468)
T PF13844_consen 275 TRAQYGLPEDAVVFGSFNNLF 295 (468)
T ss_dssp ETGGGT--SSSEEEEE-S-GG
T ss_pred CHHHcCCCCCceEEEecCccc
Confidence 489999999999999999753
No 386
>PRK12937 short chain dehydrogenase; Provisional
Probab=32.85 E-value=2.2e+02 Score=24.18 Aligned_cols=79 Identities=15% Similarity=0.118 Sum_probs=42.8
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH--
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN-- 146 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~----~~k~~~~i~-- 146 (282)
++|++|++. |+--+=.++|+.|.+.|+.+.++..+..+ ....+.+++...+-++. +-...+++.
T Consensus 4 ~~~~vlItG------~~~~iG~~la~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (245)
T PRK12937 4 SNKVAIVTG------ASRGIGAAIARRLAADGFAVAVNYAGSAA----AADELVAEIEAAGGRAIAVQADVADAAAVTRL 73 (245)
T ss_pred CCCEEEEeC------CCchHHHHHHHHHHHCCCEEEEecCCCHH----HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 466666643 22336678999999999998766533221 11123444544332222 112222222
Q ss_pred ------HhhccCEEEEechhc
Q 023401 147 ------TALKADLIVLNTAVA 161 (282)
Q Consensus 147 ------~a~~~DLVIaNT~v~ 161 (282)
....+|.||.|..+.
T Consensus 74 ~~~~~~~~~~id~vi~~ag~~ 94 (245)
T PRK12937 74 FDAAETAFGRIDVLVNNAGVM 94 (245)
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 124689999998653
No 387
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=32.80 E-value=1.1e+02 Score=29.13 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=31.3
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
+-++||+|++| .|.-.||+ -|.+.++.|++.|...+.+..-+|
T Consensus 206 ~~v~g~~vliV-DDii~tG~--Tl~~a~~~l~~~ga~~v~~~~th~ 248 (308)
T TIGR01251 206 GDVEGKDVVIV-DDIIDTGG--TIAKAAEILKSAGAKRVIAAATHG 248 (308)
T ss_pred cccCCCEEEEE-ccccCCHH--HHHHHHHHHHhcCCCEEEEEEEee
Confidence 34689977766 45666677 688999999999988665554443
No 388
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=32.79 E-value=94 Score=26.71 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=28.8
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~ 108 (282)
+.+|++||+| .|.-.||+ -+.+.+..|++.|.+++
T Consensus 111 ~~~g~~VLIV-DDivtTG~--Tl~~~~~~l~~~Ga~~v 145 (175)
T PRK02304 111 IKPGDRVLIV-DDLLATGG--TLEAAIKLLERLGAEVV 145 (175)
T ss_pred cCCCCEEEEE-eCCccccH--HHHHHHHHHHHcCCEEE
Confidence 4789998877 67778888 48889999999998855
No 389
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=32.67 E-value=5e+02 Score=25.63 Aligned_cols=88 Identities=18% Similarity=0.250 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch---hHHHHhhccCEEEEechhchHHHHHHhh
Q 023401 94 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---ETINTALKADLIVLNTAVAGKWLDAVLK 170 (282)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~---~~i~~a~~~DLVIaNT~v~g~wl~~l~~ 170 (282)
+.+|..|-..|...+=++..+. ..-+.....+++- +..-+-.+.| +.|. +.+.||||+-+-=-....++|.
T Consensus 57 ~SFaDaLaal~v~PVGIADDnk--~krI~k~Vr~ki~--~ytSVGTRsQPslE~Is-~LKPDLIIAD~sRHk~vy~eLk- 130 (310)
T COG4594 57 LSFADALAALGVTPVGIADDNK--KKRILKDVRDKID--PYTSVGTRSQPSLEAIS-ALKPDLIIADSSRHKKVYKELK- 130 (310)
T ss_pred ecHHHHHHHcCCeeeeeccCch--hhhhhHHHHhhcC--CcccccCCCCCCHHHHh-ccCCCeEEecchhhHHHHHHHH-
Confidence 4567889999999888883322 2222111122211 1222222333 3444 8999999999987777778884
Q ss_pred ccCCCCCCceEEEeeeccccccc
Q 023401 171 EDVPRVLPNVLWWIHEMRGHYFK 193 (282)
Q Consensus 171 ~~~~~~~~pVIWWIHE~r~~Yf~ 193 (282)
++. |+|-.--- .+.|-.
T Consensus 131 ----KIA-PTi~LkS~-~~dY~e 147 (310)
T COG4594 131 ----KIA-PTIALKSR-NEDYQE 147 (310)
T ss_pred ----hhc-ceeEeccc-CccHHH
Confidence 445 77765421 144553
No 390
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.63 E-value=92 Score=29.55 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=22.4
Q ss_pred hhhhHHHHHHcCCceee-hhchhHH-HHhhccCEEEEech
Q 023401 122 IYSLEHKMWDRGVQVIS-AKGQETI-NTALKADLIVLNTA 159 (282)
Q Consensus 122 ~~~L~~kll~rgI~v~~-~k~~~~i-~~a~~~DLVIaNT~ 159 (282)
-.++...|+++|..|.. ++.-+.+ +...++|+||.-|-
T Consensus 172 Gkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 172 GKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVG 211 (283)
T ss_pred HHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccC
Confidence 34566666777765541 2222222 24578999999883
No 391
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=32.63 E-value=1.2e+02 Score=21.74 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=27.6
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Q 023401 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275 (282)
Q Consensus 238 ~~~~~l~~~a~~~v~~~~lre~vr~~lGl~~dd~lv~~ 275 (282)
|.++|.-+ .+.+ .+-+.+.+.+|+|++.+-|.+
T Consensus 11 Grs~EqK~----~L~~-~it~a~~~~~~~p~~~v~V~i 43 (60)
T PRK02289 11 GRSQEQKN----ALAR-EVTEVVSRIAKAPKEAIHVFI 43 (60)
T ss_pred CCCHHHHH----HHHH-HHHHHHHHHhCcCcceEEEEE
Confidence 67888877 7777 688899999999999988765
No 392
>PRK07774 short chain dehydrogenase; Provisional
Probab=32.56 E-value=3.2e+02 Score=23.41 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=25.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
+++|++|+++ -+| -+=.++++.|.+.|++|.++..
T Consensus 4 ~~~k~vlItG----asg--~iG~~la~~l~~~g~~vi~~~r 38 (250)
T PRK07774 4 FDDKVAIVTG----AAG--GIGQAYAEALAREGASVVVADI 38 (250)
T ss_pred cCCCEEEEEC----CCc--hHHHHHHHHHHHCCCEEEEEeC
Confidence 5678877764 223 3567889999999999887763
No 393
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=32.55 E-value=3.2e+02 Score=24.57 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=38.4
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc-eeehhchhHHHHhhccCE
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ-VISAKGQETINTALKADL 153 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~-v~~~k~~~~i~~a~~~DL 153 (282)
+.|++++.-...-|-.-++.+.+..|...+..+.++++. |+ . ..|++...+.++. ++.-.....-+....+|+
T Consensus 180 ~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~-~~----~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~ 253 (348)
T TIGR01133 180 PTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGK-ND----L-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL 253 (348)
T ss_pred eEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCc-ch----H-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE
Confidence 345566542221121223457777777666566544422 21 1 2345555555642 221112223346778999
Q ss_pred EEEec
Q 023401 154 IVLNT 158 (282)
Q Consensus 154 VIaNT 158 (282)
+|...
T Consensus 254 ~v~~~ 258 (348)
T TIGR01133 254 VISRA 258 (348)
T ss_pred EEECC
Confidence 99864
No 394
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=32.53 E-value=3.5e+02 Score=23.90 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=44.8
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc--ee-ehhchhHHHHhhccCE
Q 023401 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VI-SAKGQETINTALKADL 153 (282)
Q Consensus 77 ILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~--v~-~~k~~~~i~~a~~~DL 153 (282)
|++++ -++..-++-.+++++..|++.+.++.++...+|+..+.....+.+.+.+.+.. |. .....+.......+|+
T Consensus 188 i~~~G-r~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~ 266 (355)
T cd03819 188 ILLPG-RLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADI 266 (355)
T ss_pred EEEee-ccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCE
Confidence 44444 45566677888999999998766655555223333333323334444444432 22 1222233346777998
Q ss_pred EEEec
Q 023401 154 IVLNT 158 (282)
Q Consensus 154 VIaNT 158 (282)
.+.-+
T Consensus 267 ~i~ps 271 (355)
T cd03819 267 VVSAS 271 (355)
T ss_pred EEecC
Confidence 88755
No 395
>PRK07109 short chain dehydrogenase; Provisional
Probab=32.48 E-value=2.2e+02 Score=26.73 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=44.5
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (282)
|++|+||+.. -+|+ +=.++++.|.+.|++|+++..+ .+ . ...+.+++...|.++. +-...++++
T Consensus 6 l~~k~vlITG----as~g--IG~~la~~la~~G~~Vvl~~R~-~~---~-l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~ 74 (334)
T PRK07109 6 IGRQVVVITG----ASAG--VGRATARAFARRGAKVVLLARG-EE---G-LEALAAEIRAAGGEALAVVADVADAEAVQA 74 (334)
T ss_pred CCCCEEEEEC----CCCH--HHHHHHHHHHHCCCEEEEEECC-HH---H-HHHHHHHHHHcCCcEEEEEecCCCHHHHHH
Confidence 5677666542 2333 6678899999999998777632 21 1 1223455555554433 112222232
Q ss_pred -------HhhccCEEEEechh
Q 023401 147 -------TALKADLIVLNTAV 160 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v 160 (282)
....+|.+|.|..+
T Consensus 75 ~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 75 AADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHCCCCCEEEECCCc
Confidence 23468999988765
No 396
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=32.42 E-value=1.2e+02 Score=27.28 Aligned_cols=79 Identities=25% Similarity=0.257 Sum_probs=43.9
Q ss_pred cEEEEEeccCCCC--Cch-HHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhch----hHH
Q 023401 75 KLVLLVSHELSLS--GGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKGQ----ETI 145 (282)
Q Consensus 75 KkILLISHELs~T--GAP-LlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r--gI~v~~~k~~----~~i 145 (282)
++.+++..-.+.. .=| =-..++++.|.+.|.+++++. ++++.+. .+++.+. +.+++.-.+. +.+
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g---~~~e~~~----~~~i~~~~~~~~~~~~~~~~~l~e~~ 193 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTG---GPAEREL----AEEIAAALGGPRVVNLAGKTSLRELA 193 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe---chhhHHH----HHHHHHhcCCCccccCcCCCCHHHHH
Confidence 4456665544433 223 267899999998899888765 3222222 2333332 1222222222 223
Q ss_pred HHhhccCEEEEe-chh
Q 023401 146 NTALKADLIVLN-TAV 160 (282)
Q Consensus 146 ~~a~~~DLVIaN-T~v 160 (282)
....++|++|.| |..
T Consensus 194 ~li~~~~l~I~~Dsg~ 209 (279)
T cd03789 194 ALLARADLVVTNDSGP 209 (279)
T ss_pred HHHHhCCEEEeeCCHH
Confidence 467789999999 653
No 397
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=32.39 E-value=1.2e+02 Score=28.74 Aligned_cols=78 Identities=26% Similarity=0.309 Sum_probs=46.1
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehhchhH-HHHhhcc
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAKGQET-INTALKA 151 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r-gI~v~~~k~~~~-i~~a~~~ 151 (282)
.++|++++ ++.=|+ .+|+.||+.|..|.++..+.- ...++.. ...+.++..... ...+.++
T Consensus 3 ~~~v~IvG--~GliG~-----s~a~~l~~~g~~v~i~g~d~~----------~~~~~~a~~lgv~d~~~~~~~~~~~~~a 65 (279)
T COG0287 3 SMKVGIVG--LGLMGG-----SLARALKEAGLVVRIIGRDRS----------AATLKAALELGVIDELTVAGLAEAAAEA 65 (279)
T ss_pred CcEEEEEC--CchHHH-----HHHHHHHHcCCeEEEEeecCc----------HHHHHHHhhcCcccccccchhhhhcccC
Confidence 45677776 555555 678999999999988874322 1222222 233444321221 3356779
Q ss_pred CEEEEechhc--hHHHHHH
Q 023401 152 DLIVLNTAVA--GKWLDAV 168 (282)
Q Consensus 152 DLVIaNT~v~--g~wl~~l 168 (282)
|+||+-+=+. ...++++
T Consensus 66 D~VivavPi~~~~~~l~~l 84 (279)
T COG0287 66 DLVIVAVPIEATEEVLKEL 84 (279)
T ss_pred CEEEEeccHHHHHHHHHHh
Confidence 9999987654 3444444
No 398
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=32.37 E-value=1.8e+02 Score=27.51 Aligned_cols=87 Identities=18% Similarity=0.103 Sum_probs=50.0
Q ss_pred cEEEEEeccCCCC----CchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCc--eeehhchhHHH-
Q 023401 75 KLVLLVSHELSLS----GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQ--VISAKGQETIN- 146 (282)
Q Consensus 75 KkILLISHELs~T----GAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r-gI~--v~~~k~~~~i~- 146 (282)
|+.+++.|..+.. ---=-.-++++.|.+.|..|++..+. ++-+. .+++.+. +-. +........+-
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~---~e~e~----~~~i~~~~~~~~~l~~k~sL~e~~~ 247 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGP---DEEER----AEEIAKGLPNAVILAGKTSLEELAA 247 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecCh---HHHHH----HHHHHHhcCCccccCCCCCHHHHHH
Confidence 5789999984442 23346789999999999555554422 22233 3444433 211 23333333332
Q ss_pred HhhccCEEEEechhchHHHHHH
Q 023401 147 TALKADLIVLNTAVAGKWLDAV 168 (282)
Q Consensus 147 ~a~~~DLVIaNT~v~g~wl~~l 168 (282)
....+|+||.|=-.-.+.-.++
T Consensus 248 li~~a~l~I~~DSg~~HlAaA~ 269 (334)
T COG0859 248 LIAGADLVIGNDSGPMHLAAAL 269 (334)
T ss_pred HHhcCCEEEccCChHHHHHHHc
Confidence 4568999999987554444433
No 399
>PRK13984 putative oxidoreductase; Provisional
Probab=32.36 E-value=3e+02 Score=28.05 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=50.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC------------CchhhhhhhHHHHHHcCCceeeh
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS------------EEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~------------~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
-++|+|++|. . | ..=+..|..|++.|++|.++-...-. ...++.....+.+.+.|+.+...
T Consensus 281 ~~~~~v~IIG--a---G--~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~ 353 (604)
T PRK13984 281 KKNKKVAIVG--S---G--PAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLN 353 (604)
T ss_pred cCCCeEEEEC--C---C--HHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECC
Confidence 3688999997 2 2 36678899999999999888532211 01222223345666678887654
Q ss_pred hch-h--HHH-HhhccCEEEEechhc
Q 023401 140 KGQ-E--TIN-TALKADLIVLNTAVA 161 (282)
Q Consensus 140 k~~-~--~i~-~a~~~DLVIaNT~v~ 161 (282)
..- . .++ ....||.||..|-..
T Consensus 354 ~~v~~~~~~~~~~~~yD~vilAtGa~ 379 (604)
T PRK13984 354 TRVGKDIPLEELREKHDAVFLSTGFT 379 (604)
T ss_pred CEeCCcCCHHHHHhcCCEEEEEcCcC
Confidence 211 0 111 224699999999853
No 400
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=32.15 E-value=2.2e+02 Score=27.22 Aligned_cols=86 Identities=24% Similarity=0.233 Sum_probs=57.4
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----------------------CchhhhhhhHHHHHHc-C
Q 023401 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----------------------EEDEVIYSLEHKMWDR-G 133 (282)
Q Consensus 77 ILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----------------------~~~~v~~~L~~kll~r-g 133 (282)
+=+|..+-++---|.-+++.++.|.+.|+.|.-.+..+.. ..+...+.+.+.+.+. +
T Consensus 96 lEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~ 175 (248)
T cd04728 96 LEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERAD 175 (248)
T ss_pred EEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCC
Confidence 4567888888899999999999999999999844433322 1122223344555553 7
Q ss_pred CceeehhchhHHH-----HhhccCEEEEechhch
Q 023401 134 VQVISAKGQETIN-----TALKADLIVLNTAVAG 162 (282)
Q Consensus 134 I~v~~~k~~~~i~-----~a~~~DLVIaNT~v~g 162 (282)
++|+-+=+..+=+ +..-+|-|++||++.-
T Consensus 176 vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 176 VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 8888663333221 3567999999999863
No 401
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=32.10 E-value=1.9e+02 Score=31.88 Aligned_cols=75 Identities=23% Similarity=0.175 Sum_probs=46.6
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhh
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL 149 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~ 149 (282)
.+..||++.+.. .|-.+..+++.|.+.|.+++.++..... + ..+++. .+.-.+.|...-+. .+.
T Consensus 783 ~~l~gkrvai~~-------~~d~~~~l~~~l~elG~~v~~~~~~~~~---~----~~~~l~-~~~v~v~D~~~~e~-~~~ 846 (917)
T PRK14477 783 YQFGGKKVALAL-------EPDLLKALTSFLAGMGCEIQAAVAATRS---R----GLDRLP-AENVFVGDLEDLET-AAA 846 (917)
T ss_pred HhcCCCEEEEEe-------ChHHHHHHHHHHHHcCCeEEEEEeCCCh---H----HHHhCC-cCcEEeCCHHHHHh-hcc
Confidence 356799987654 4556888999999999999998854432 1 112221 12112233222222 357
Q ss_pred ccCEEEEechh
Q 023401 150 KADLIVLNTAV 160 (282)
Q Consensus 150 ~~DLVIaNT~v 160 (282)
++|++|.|+-.
T Consensus 847 ~~dllig~s~~ 857 (917)
T PRK14477 847 GADLLVANSNG 857 (917)
T ss_pred CCCEEEECchH
Confidence 89999999963
No 402
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=32.08 E-value=1.1e+02 Score=28.72 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=43.9
Q ss_pred cEEEEEeccCCCCC--chH-HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc--CCceeehhchhHH----
Q 023401 75 KLVLLVSHELSLSG--GPL-LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR--GVQVISAKGQETI---- 145 (282)
Q Consensus 75 KkILLISHELs~TG--APL-lLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r--gI~v~~~k~~~~i---- 145 (282)
++++.|..-.+... =|. -..++++.|.+.|..++++. |+.+.+. ...+++.+. .-+++.--+.-++
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~g---gp~e~e~--~~~~~i~~~~~~~~~~~l~g~~sL~el~ 257 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTS---GPDKDDL--ACVNEIAQGCQTPPVTALAGKTTFPELG 257 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEc---CCChHHH--HHHHHHHHhcCCCccccccCCCCHHHHH
Confidence 45666654332211 122 45689999988899888775 3322222 122444432 1223322222223
Q ss_pred HHhhccCEEEEechhchH
Q 023401 146 NTALKADLIVLNTAVAGK 163 (282)
Q Consensus 146 ~~a~~~DLVIaNT~v~g~ 163 (282)
.....+|++|.|=-.-.+
T Consensus 258 ali~~a~l~v~nDSGp~H 275 (352)
T PRK10422 258 ALIDHAQLFIGVDSAPAH 275 (352)
T ss_pred HHHHhCCEEEecCCHHHH
Confidence 256779999999654333
No 403
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=32.06 E-value=1.4e+02 Score=26.49 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh-chhHHH----HhhccCEEEEechhch
Q 023401 94 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-GQETIN----TALKADLIVLNTAVAG 162 (282)
Q Consensus 94 leLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k-~~~~i~----~a~~~DLVIaNT~v~g 162 (282)
..||+.+...|++|.++.+... + .. -.++.++... ..+.++ .+.+.|.+|...+|+=
T Consensus 33 ~~lA~~~~~~Ga~V~li~g~~~-----~----~~---p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAVsD 94 (185)
T PF04127_consen 33 AALAEEAARRGAEVTLIHGPSS-----L----PP---PPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAVSD 94 (185)
T ss_dssp HHHHHHHHHTT-EEEEEE-TTS----------------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB--S
T ss_pred HHHHHHHHHCCCEEEEEecCcc-----c----cc---cccceEEEecchhhhhhhhccccCcceeEEEecchhh
Confidence 4889999999999999995522 1 00 2356666442 222222 4567899999999863
No 404
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=31.83 E-value=2.8e+02 Score=30.94 Aligned_cols=81 Identities=19% Similarity=0.110 Sum_probs=55.7
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC--CC----------CchhhhhhhHHHHHHcCCceeehh
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK--PS----------EEDEVIYSLEHKMWDRGVQVISAK 140 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~--G~----------~~~~v~~~L~~kll~rgI~v~~~k 140 (282)
+||+|++| ||=-.=|..|..|.+.|++|.++-... |+ ...+++....+.+.+.|+.+....
T Consensus 429 ~~~kVaII-------G~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~ 501 (1006)
T PRK12775 429 KLGKVAIC-------GSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNK 501 (1006)
T ss_pred CCCEEEEE-------CCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 58899999 444467889999999999999887321 11 134555666778888899887652
Q ss_pred c---hhHHHHh---hccCEEEEechh
Q 023401 141 G---QETINTA---LKADLIVLNTAV 160 (282)
Q Consensus 141 ~---~~~i~~a---~~~DLVIaNT~v 160 (282)
. .-+++.. ..||-||+-|-+
T Consensus 502 ~vg~~~~~~~l~~~~~yDaViIATGa 527 (1006)
T PRK12775 502 VIGKTFTVPQLMNDKGFDAVFLGVGA 527 (1006)
T ss_pred ccCCccCHHHHhhccCCCEEEEecCC
Confidence 1 1123322 359999999986
No 405
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=31.55 E-value=2.2e+02 Score=22.04 Aligned_cols=31 Identities=29% Similarity=0.280 Sum_probs=25.3
Q ss_pred ccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 82 HELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 82 HELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
+....-.-|+-++.+|..|++.|++|..+-.
T Consensus 6 ~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 6 ACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp EEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred EeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 3445556789999999999999999998853
No 406
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=31.44 E-value=1.7e+02 Score=28.29 Aligned_cols=85 Identities=24% Similarity=0.139 Sum_probs=54.4
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----------------------CchhhhhhhHHHHHH-cC
Q 023401 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----------------------EEDEVIYSLEHKMWD-RG 133 (282)
Q Consensus 77 ILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----------------------~~~~v~~~L~~kll~-rg 133 (282)
+=+|..+-++-=-|+-+++.++.|.+.|+.|.-.++.++- ..|.......+-+.+ -.
T Consensus 110 LEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~ 189 (267)
T CHL00162 110 LEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAK 189 (267)
T ss_pred EEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCC
Confidence 5567788888889999999999999999999887765542 111111112222222 24
Q ss_pred CceeehhchhH-----HHHhhccCEEEEechhc
Q 023401 134 VQVISAKGQET-----INTALKADLIVLNTAVA 161 (282)
Q Consensus 134 I~v~~~k~~~~-----i~~a~~~DLVIaNT~v~ 161 (282)
++|+.+-|.-+ .-+...+|-|.+||+++
T Consensus 190 vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIa 222 (267)
T CHL00162 190 IPVIIDAGIGTPSEASQAMELGASGVLLNTAVA 222 (267)
T ss_pred CcEEEeCCcCCHHHHHHHHHcCCCEEeecceee
Confidence 55555533222 11456699999999986
No 407
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=31.43 E-value=3.3e+02 Score=23.62 Aligned_cols=76 Identities=11% Similarity=0.144 Sum_probs=42.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHH--
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETI-- 145 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~----~~k~~~~i-- 145 (282)
|++|++|+.. |+.-+=.++++.|.+.|++|.++... .. ...+.+++...|..+. +-....++
T Consensus 6 ~~~k~vlVtG------as~gIG~~la~~l~~~G~~v~~~~r~-~~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 73 (260)
T PRK12823 6 FAGKVVVVTG------AAQGIGRGVALRAAAEGARVVLVDRS-EL-----VHEVAAELRAAGGEALALTADLETYAGAQA 73 (260)
T ss_pred cCCCEEEEeC------CCchHHHHHHHHHHHCCCEEEEEeCc-hH-----HHHHHHHHHhcCCeEEEEEEeCCCHHHHHH
Confidence 6788777643 22335578899999999998776532 21 1133455555444332 11222222
Q ss_pred --H----HhhccCEEEEech
Q 023401 146 --N----TALKADLIVLNTA 159 (282)
Q Consensus 146 --~----~a~~~DLVIaNT~ 159 (282)
+ ....+|.+|.|..
T Consensus 74 ~~~~~~~~~~~id~lv~nAg 93 (260)
T PRK12823 74 AMAAAVEAFGRIDVLINNVG 93 (260)
T ss_pred HHHHHHHHcCCCeEEEECCc
Confidence 2 1246899988875
No 408
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.35 E-value=2.5e+02 Score=23.58 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=25.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
|+.|+||++.- ||+ +=.++++.|.+.|++|.++..+
T Consensus 4 ~~~~~vlItGa----sg~--iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 4 LMGRVALVTGA----ARG--LGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCEEEEeCC----Cch--HHHHHHHHHHHCCCeEEEEeCC
Confidence 35678888763 344 5678899999999998666644
No 409
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=31.12 E-value=85 Score=26.65 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhc
Q 023401 95 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG 141 (282)
Q Consensus 95 eLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~ 141 (282)
.+|..|+..|.++++..+-++ .-.+-|.++||+++...+
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~--------~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGP--------NAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCH--------HHHHHHHHcCcEEEecCC
Confidence 356788999999998886655 346788889999997643
No 410
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=31.03 E-value=97 Score=28.72 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=27.9
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
|++||+||+.. .|| -+=.++++.|.+.|++|..+..+
T Consensus 1 ~~~~k~ilItG----atG--~IG~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 1 FWQGKKVLVTG----HTG--FKGSWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred CcCCCEEEEEC----CCC--hhHHHHHHHHHHCCCEEEEEeCC
Confidence 78899988765 233 25578999999999999877643
No 411
>PRK08264 short chain dehydrogenase; Validated
Probab=30.93 E-value=2.2e+02 Score=24.22 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=24.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCC-eEEEEe
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGT-KVNWIT 111 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~-~V~vL~ 111 (282)
+++|+||+++ |+--+=.++|+.|.+.|+ .|.++.
T Consensus 4 ~~~~~vlItG------gsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 4 IKGKVVLVTG------ANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CCCCEEEEEC------CCchHHHHHHHHHHHCCcccEEEEe
Confidence 4567777764 333477899999999999 665555
No 412
>PRK09526 lacI lac repressor; Reviewed
Probab=30.91 E-value=4e+02 Score=24.04 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=26.8
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
+++.|-+|..+++..--.-++-.+-..+++.|+++.+...
T Consensus 62 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~~~ 101 (342)
T PRK09526 62 QSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVISMV 101 (342)
T ss_pred CCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4567888876654333334556677888899999887653
No 413
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=30.89 E-value=1.6e+02 Score=25.28 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=41.5
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH-cCCceee--hhchhHH-HH
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD-RGVQVIS--AKGQETI-NT 147 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~-rgI~v~~--~k~~~~i-~~ 147 (282)
+++|+++++.-. |. +=..+++.|.+.|.+|.++. +..+ -...+.+.+.. .+.++.. ......+ ..
T Consensus 26 l~~~~vlVlGgt----G~--iG~~~a~~l~~~g~~V~l~~-R~~~----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (194)
T cd01078 26 LKGKTAVVLGGT----GP--VGQRAAVLLAREGARVVLVG-RDLE----RAQKAADSLRARFGEGVGAVETSDDAARAAA 94 (194)
T ss_pred CCCCEEEEECCC----CH--HHHHHHHHHHHCCCEEEEEc-CCHH----HHHHHHHHHHhhcCCcEEEeeCCCHHHHHHH
Confidence 467888888532 22 22456677777898887764 4331 11122333321 1333321 1222222 34
Q ss_pred hhccCEEEEechhc
Q 023401 148 ALKADLIVLNTAVA 161 (282)
Q Consensus 148 a~~~DLVIaNT~v~ 161 (282)
+.++|+||..|...
T Consensus 95 ~~~~diVi~at~~g 108 (194)
T cd01078 95 IKGADVVFAAGAAG 108 (194)
T ss_pred HhcCCEEEECCCCC
Confidence 66899888877643
No 414
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=30.80 E-value=78 Score=29.76 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee
Q 023401 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS 138 (282)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~ 138 (282)
++.||+.|++.|++|.+.+ ++ ...+.+.+.|+..+.
T Consensus 12 ~l~lA~~L~~~Gh~V~~~~---~~-------~~~~~v~~~G~~~~~ 47 (392)
T TIGR01426 12 TLGVVEELVARGHRVTYAT---TE-------EFAERVEAAGAEFVL 47 (392)
T ss_pred cHHHHHHHHhCCCeEEEEe---CH-------HHHHHHHHcCCEEEe
No 415
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=30.78 E-value=1.4e+02 Score=23.47 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=40.7
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh----hchhHHH---Hhh
Q 023401 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA----KGQETIN---TAL 149 (282)
Q Consensus 77 ILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~----k~~~~i~---~a~ 149 (282)
||+.-+|.+. =-++++++.|.+.|+++.... | ..+-+.+.|+++-.- .+...+. ...
T Consensus 3 vl~s~~~~~k----~~~~~~~~~l~~~G~~l~aT~---g---------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~ 66 (110)
T cd01424 3 VFISVADRDK----PEAVEIAKRLAELGFKLVATE---G---------TAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNG 66 (110)
T ss_pred EEEEEEcCcH----hHHHHHHHHHHHCCCEEEEch---H---------HHHHHHHcCCeEEEEeecCCCchhHHHHHHcC
Confidence 5555555432 257799999999999987543 2 345566678885321 1122222 367
Q ss_pred ccCEEEEec
Q 023401 150 KADLIVLNT 158 (282)
Q Consensus 150 ~~DLVIaNT 158 (282)
++|+||...
T Consensus 67 ~id~vIn~~ 75 (110)
T cd01424 67 EIQLVINTP 75 (110)
T ss_pred CeEEEEECC
Confidence 799998753
No 416
>PRK05717 oxidoreductase; Validated
Probab=30.77 E-value=3.5e+02 Score=23.50 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=26.1
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
-+.+||++|++. |+--+=.++|+.|.+.|.+|+++.
T Consensus 6 ~~~~~k~vlItG------~sg~IG~~~a~~l~~~g~~v~~~~ 41 (255)
T PRK05717 6 PGHNGRVALVTG------AARGIGLGIAAWLIAEGWQVVLAD 41 (255)
T ss_pred cccCCCEEEEeC------CcchHHHHHHHHHHHcCCEEEEEc
Confidence 356788777653 233466789999999999988775
No 417
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.59 E-value=2.6e+02 Score=23.91 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=16.2
Q ss_pred hhccCEEEEechh-chHHHHHHhhccCCCCCCceEEE
Q 023401 148 ALKADLIVLNTAV-AGKWLDAVLKEDVPRVLPNVLWW 183 (282)
Q Consensus 148 a~~~DLVIaNT~v-~g~wl~~l~~~~~~~~~~pVIWW 183 (282)
..++|.||+.... ....++.+.+.++ |+|..
T Consensus 53 ~~~~dgiii~~~~~~~~~~~~~~~~~i-----pvV~i 84 (270)
T cd06296 53 ARRTDGVILVTPELTSAQRAALRRTGI-----PFVVV 84 (270)
T ss_pred HcCCCEEEEecCCCChHHHHHHhcCCC-----CEEEE
Confidence 4557766654432 3445565543344 66554
No 418
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=30.57 E-value=3.1e+02 Score=22.70 Aligned_cols=76 Identities=21% Similarity=0.172 Sum_probs=41.5
Q ss_pred CCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch--------hHHH--HhhccCEE
Q 023401 85 SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--------ETIN--TALKADLI 154 (282)
Q Consensus 85 s~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~--------~~i~--~a~~~DLV 154 (282)
..+|-.-+...+|..+.+.|..|.++.+..- ......-+.....+.|+++...... +.+. ...++|+|
T Consensus 9 ~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 86 (173)
T cd03115 9 QGVGKTTTAAKLALYLKKKGKKVLLVAADTY--RPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFDVV 86 (173)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC--ChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 4567777888888888877777777663311 1111011112222346666543110 1122 24578999
Q ss_pred EEechhch
Q 023401 155 VLNTAVAG 162 (282)
Q Consensus 155 IaNT~v~g 162 (282)
|..|.-..
T Consensus 87 iiDt~g~~ 94 (173)
T cd03115 87 IVDTAGRL 94 (173)
T ss_pred EEECcccc
Confidence 99998764
No 419
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=30.45 E-value=67 Score=30.36 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeeh
Q 023401 90 PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISA 139 (282)
Q Consensus 90 PLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r-gI~v~~~ 139 (282)
.++.-+.++.+++.|+++.+|.|-+= ..|.+++.+. ||||++-
T Consensus 160 ~~l~~~~~~a~~edgAeaIiLGCAGm-------s~la~~Lq~~~gvPVIDg 203 (230)
T COG4126 160 ALLVIEAAEALKEDGAEAIILGCAGM-------SDLADQLQKAFGVPVIDG 203 (230)
T ss_pred HHHHHHHHHHhhhcCCCEEEEcCccH-------HHHHHHHHHHhCCCcccc
Confidence 35667788999999999999997643 3677888776 9999865
No 420
>PRK06841 short chain dehydrogenase; Provisional
Probab=30.43 E-value=3.3e+02 Score=23.40 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=23.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
+++|++|+++ -+| -+=.++|+.|.+.|++|.++.
T Consensus 13 ~~~k~vlItG----as~--~IG~~la~~l~~~G~~Vi~~~ 46 (255)
T PRK06841 13 LSGKVAVVTG----GAS--GIGHAIAELFAAKGARVALLD 46 (255)
T ss_pred CCCCEEEEEC----CCC--hHHHHHHHHHHHCCCEEEEEe
Confidence 4677766652 223 255788999999999977665
No 421
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=30.42 E-value=1.3e+02 Score=27.45 Aligned_cols=75 Identities=21% Similarity=0.225 Sum_probs=50.9
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEeccCCC--Cc--hhhhhhhHHHHHHcCCceeehhchhHHH----------------H
Q 023401 88 GGPLLLMELAFLLRGVGTKVNWITIQKPS--EE--DEVIYSLEHKMWDRGVQVISAKGQETIN----------------T 147 (282)
Q Consensus 88 GAPLlLleLA~~Lkq~G~~V~vL~~~~G~--~~--~~v~~~L~~kll~rgI~v~~~k~~~~i~----------------~ 147 (282)
|+-...+++|..|++.|.+|.++-...-. .- .++...+.+.+.++||.+........+. .
T Consensus 143 G~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 222 (415)
T COG0446 143 GAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE 222 (415)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCc
Confidence 67778899999999999999888833222 11 4566667777777888775442211111 1
Q ss_pred hhccCEEEEechhch
Q 023401 148 ALKADLIVLNTAVAG 162 (282)
Q Consensus 148 a~~~DLVIaNT~v~g 162 (282)
-..+|+++.-+....
T Consensus 223 ~~~~d~~~~~~g~~p 237 (415)
T COG0446 223 EIKADLVIIGPGERP 237 (415)
T ss_pred EEEeeEEEEeecccc
Confidence 234899999888776
No 422
>PLN02891 IMP cyclohydrolase
Probab=30.33 E-value=1.1e+02 Score=32.38 Aligned_cols=49 Identities=22% Similarity=0.125 Sum_probs=32.1
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
|++-.|||= -+-|| +.++|+.|.+.|+++.--. | ..+.|.+.||+|.+-
T Consensus 21 ~~krALISV-sDKtg----i~~fAk~L~~~gveIiSTg---G---------Tak~L~e~Gi~v~~V 69 (547)
T PLN02891 21 GKKQALISL-SDKTD----LALLANGLQELGYTIVSTG---G---------TASALEAAGVSVTKV 69 (547)
T ss_pred cccEEEEEE-ecccC----HHHHHHHHHHCCCEEEEcc---h---------HHHHHHHcCCceeeH
Confidence 344444442 23455 7899999999998865332 4 356677788888754
No 423
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=30.15 E-value=2.3e+02 Score=23.54 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=28.6
Q ss_pred EEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 78 LLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 78 LLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
+.+.---+..|-..+-.+||..|.+.|..|.++=
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD 35 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLD 35 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEe
Confidence 4455556778999999999999999999999885
No 424
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=30.14 E-value=2.9e+02 Score=22.19 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=38.5
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCC-CeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG-TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G-~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~ 150 (282)
.++++|++|+ +| .+=..+++.|.+.| .+|.+. ++... .. ..+.+++..+++...... .. +.+.+
T Consensus 17 ~~~~~i~iiG-----~G--~~g~~~a~~l~~~g~~~v~v~-~r~~~---~~-~~~~~~~~~~~~~~~~~~-~~--~~~~~ 81 (155)
T cd01065 17 LKGKKVLILG-----AG--GAARAVAYALAELGAAKIVIV-NRTLE---KA-KALAERFGELGIAIAYLD-LE--ELLAE 81 (155)
T ss_pred CCCCEEEEEC-----Cc--HHHHHHHHHHHHCCCCEEEEE-cCCHH---HH-HHHHHHHhhcccceeecc-hh--hcccc
Confidence 4578898885 23 24557778888886 445544 33331 11 111222221111111110 11 12578
Q ss_pred cCEEEEechhch
Q 023401 151 ADLIVLNTAVAG 162 (282)
Q Consensus 151 ~DLVIaNT~v~g 162 (282)
+|+||.+|-...
T Consensus 82 ~Dvvi~~~~~~~ 93 (155)
T cd01065 82 ADLIINTTPVGM 93 (155)
T ss_pred CCEEEeCcCCCC
Confidence 999999987543
No 425
>PRK05854 short chain dehydrogenase; Provisional
Probab=30.01 E-value=1.8e+02 Score=26.77 Aligned_cols=36 Identities=22% Similarity=0.125 Sum_probs=25.5
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
.-++||++|+.. -+| =+=.++|+.|.+.|+.|.++.
T Consensus 10 ~~l~gk~~lITG----as~--GIG~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 10 PDLSGKRAVVTG----ASD--GLGLGLARRLAAAGAEVILPV 45 (313)
T ss_pred cccCCCEEEEeC----CCC--hHHHHHHHHHHHCCCEEEEEe
Confidence 347888776552 222 256789999999999987765
No 426
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=29.94 E-value=2.3e+02 Score=27.00 Aligned_cols=69 Identities=23% Similarity=0.273 Sum_probs=41.5
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhC--CCeEEEEeccCCCCchhhhhhhHHHHHHcCCceee------hhc--hhH
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS------AKG--QET 144 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~--G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~------~k~--~~~ 144 (282)
|..+|+|.+-+. |-.|....++. ++++.++.+.+++ ..+...+.|||++. .+. ...
T Consensus 95 kiavl~Sg~g~n------l~al~~~~~~~~l~~~i~~visn~~~--------~~~~A~~~gIp~~~~~~~~~~~~~~~~~ 160 (289)
T PRK13010 95 KVVIMVSKFDHC------LNDLLYRWRMGELDMDIVGIISNHPD--------LQPLAVQHDIPFHHLPVTPDTKAQQEAQ 160 (289)
T ss_pred EEEEEEeCCCcc------HHHHHHHHHCCCCCcEEEEEEECChh--------HHHHHHHcCCCEEEeCCCcccccchHHH
Confidence 788899886332 33344444443 5688888766662 35667777999983 111 112
Q ss_pred H-H--HhhccCEEEEe
Q 023401 145 I-N--TALKADLIVLN 157 (282)
Q Consensus 145 i-~--~a~~~DLVIaN 157 (282)
+ + ...++|+|++-
T Consensus 161 ~~~~l~~~~~Dlivla 176 (289)
T PRK13010 161 ILDLIETSGAELVVLA 176 (289)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 2 2 35569999864
No 427
>PLN02342 ornithine carbamoyltransferase
Probab=29.92 E-value=2.6e+02 Score=27.57 Aligned_cols=75 Identities=9% Similarity=0.103 Sum_probs=45.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCC---ceeehhchhHHHHh
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV---QVISAKGQETINTA 148 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI---~v~~~k~~~~i~~a 148 (282)
.+|++|.+|++- ++ +.-.++..+...|.+|.+.+-++=....++ .++..+.|. .+.++ --...
T Consensus 192 l~glkva~vGD~-~n-----va~Sli~~~~~~G~~v~~~~P~~~~~~~~~----~~~a~~~g~~~~~~~~d----~~eav 257 (348)
T PLN02342 192 LEGTKVVYVGDG-NN-----IVHSWLLLAAVLPFHFVCACPKGYEPDAKT----VEKARAAGISKIEITND----PAEAV 257 (348)
T ss_pred cCCCEEEEECCC-ch-----hHHHHHHHHHHcCCEEEEECCcccccCHHH----HHHHHHhCCCcEEEEcC----HHHHh
Confidence 789999999863 33 566666777778999988883321112223 233344443 22322 11256
Q ss_pred hccCEEEEechh
Q 023401 149 LKADLIVLNTAV 160 (282)
Q Consensus 149 ~~~DLVIaNT~v 160 (282)
.++|.|+..+.+
T Consensus 258 ~~aDVvy~~~W~ 269 (348)
T PLN02342 258 KGADVVYTDVWA 269 (348)
T ss_pred CCCCEEEECCcc
Confidence 789999998743
No 428
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=29.92 E-value=3.2e+02 Score=24.62 Aligned_cols=78 Identities=17% Similarity=0.074 Sum_probs=47.8
Q ss_pred HHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh----chh----HHH--HhhccCEEEEechh--ch
Q 023401 95 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----GQE----TIN--TALKADLIVLNTAV--AG 162 (282)
Q Consensus 95 eLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k----~~~----~i~--~a~~~DLVIaNT~v--~g 162 (282)
-++.++++.|..-+.+...+.+++......+.+.+.+.|++++... +.. .+. ...+.|.||..... +.
T Consensus 127 ~l~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~ 206 (312)
T cd06346 127 ALAQLAAERGYKSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPETGS 206 (312)
T ss_pred HHHHHHHHcCCCeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccchHH
Confidence 3556677777654444444555566666677888888899987431 111 122 35679999987553 45
Q ss_pred HHHHHHhhcc
Q 023401 163 KWLDAVLKED 172 (282)
Q Consensus 163 ~wl~~l~~~~ 172 (282)
..++++.+..
T Consensus 207 ~~~~~~~~~G 216 (312)
T cd06346 207 GILRSAYEQG 216 (312)
T ss_pred HHHHHHHHcC
Confidence 6677775433
No 429
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=29.79 E-value=1.4e+02 Score=32.86 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=40.6
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
.||+|++| .|+| ..+++|..|.+.|.+++.+....+ .+...+.+++.++||+++..
T Consensus 316 ~gk~VvVi------G~G~-~g~e~A~~L~~~G~~vV~vv~~~~----~~~~~l~~~L~~~GV~i~~~ 371 (985)
T TIGR01372 316 PGKRIVVA------TNND-SAYRAAADLLAAGIAVVAIIDARA----DVSPEARAEARELGIEVLTG 371 (985)
T ss_pred CCCeEEEE------CCCH-HHHHHHHHHHHcCCceEEEEccCc----chhHHHHHHHHHcCCEEEcC
Confidence 57899888 3455 588999999999987666663332 22345677888889988865
No 430
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=29.77 E-value=2.1e+02 Score=23.37 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=30.3
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 77 ILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
|+.++..-+.+|-+-+-..+|..+.+.|..+.++-..
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D 37 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDAD 37 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 3556777788899999999999999999888887633
No 431
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=29.69 E-value=3e+02 Score=23.44 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=24.5
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
+++|++|+.+ |..-+=.++++.|.+.|++|.++.
T Consensus 1 ~~~~~ilItG------as~~iG~~la~~l~~~g~~v~~~~ 34 (250)
T TIGR03206 1 LKDKTAIVTG------GGGGIGGATCRRFAEEGAKVAVFD 34 (250)
T ss_pred CCCCEEEEeC------CCChHHHHHHHHHHHCCCEEEEec
Confidence 4678777764 222366788999999999987765
No 432
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=29.47 E-value=1.2e+02 Score=28.97 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=49.8
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhch-hHHH------
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-ETIN------ 146 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~-~~i~------ 146 (282)
|||+|+|+...+..+ ..=.+...|++.|.++.+...-.|+...+.+.-..+.+.+.+..++-.-|= ..++
T Consensus 22 ~~r~liv~d~~~~~~---~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia 98 (345)
T cd08171 22 GKKVVVIGGKTALAA---AKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLA 98 (345)
T ss_pred CCEEEEEeCHHHHHH---HHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHH
Confidence 588999987655533 244566788888998876665555545555455555555556666544221 1122
Q ss_pred HhhccCEEEEechh
Q 023401 147 TALKADLIVLNTAV 160 (282)
Q Consensus 147 ~a~~~DLVIaNT~v 160 (282)
......+|.+.|..
T Consensus 99 ~~~~~p~i~VPTt~ 112 (345)
T cd08171 99 DKLGKPVFTFPTIA 112 (345)
T ss_pred HHcCCCEEEecCcc
Confidence 22245777777764
No 433
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=29.39 E-value=72 Score=29.67 Aligned_cols=41 Identities=10% Similarity=-0.006 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce
Q 023401 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV 136 (282)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v 136 (282)
-.+++.+.|++.|+.|++++++.... -...++.|.+.|.+.
T Consensus 124 ~al~l~~~l~~~G~~Vf~lTGR~e~~----r~~T~~nL~~~G~~~ 164 (229)
T TIGR01675 124 EGLKLYQKIIELGIKIFLLSGRWEEL----RNATLDNLINAGFTG 164 (229)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCChHH----HHHHHHHHHHcCCCC
Confidence 35789999999999999999886531 123456677778774
No 434
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=29.23 E-value=57 Score=29.80 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=37.8
Q ss_pred HHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccCEEEEechhc--hHHHHHHh
Q 023401 96 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVA--GKWLDAVL 169 (282)
Q Consensus 96 LA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~DLVIaNT~v~--g~wl~~l~ 169 (282)
+|+.||+.|.++.+......+ .-.++.++.|+---.. .. .+...++|+||+.|=+. ..+++++.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~-------~~~~~a~~~g~~~~~~--~~-~~~~~~~DlvvlavP~~~~~~~l~~~~ 66 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDP-------ETLEAALELGIIDEAS--TD-IEAVEDADLVVLAVPVSAIEDVLEEIA 66 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSH-------HHHHHHHHTTSSSEEE--SH-HHHGGCCSEEEE-S-HHHHHHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCH-------HHHHHHHHCCCeeecc--CC-HhHhcCCCEEEEcCCHHHHHHHHHHhh
Confidence 689999999887777744331 1234444556543322 21 44678899999998764 44555554
No 435
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.17 E-value=1e+02 Score=26.19 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=24.9
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
+++||++|+.. .+| -+=.++++.|.+.|++|.++..
T Consensus 2 ~l~~k~~lVtG----as~--~iG~~ia~~l~~~G~~v~~~~r 37 (235)
T PRK06550 2 EFMTKTVLITG----AAS--GIGLAQARAFLAQGAQVYGVDK 37 (235)
T ss_pred CCCCCEEEEcC----CCc--hHHHHHHHHHHHCCCEEEEEeC
Confidence 36788777652 233 2556788999999999877653
No 436
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=28.99 E-value=1.8e+02 Score=29.27 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=39.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH-cCCceeeh
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD-RGVQVISA 139 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~-rgI~v~~~ 139 (282)
..+|+|++| |+-..-+|+|..|.+.|.+|.++........+ ..+.+.+.+ +||++...
T Consensus 350 ~~~k~VvVi-------GgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~---~~l~~~l~~~~gV~i~~~ 408 (515)
T TIGR03140 350 FKGKDVAVI-------GGGNSGIEAAIDLAGIVRHVTVLEFADELKAD---KVLQDKLKSLPNVDILTS 408 (515)
T ss_pred cCCCEEEEE-------CCcHHHHHHHHHHHhcCcEEEEEEeCCcCChh---HHHHHHHhcCCCCEEEEC
Confidence 356777777 55567899999999999999998743222111 124555555 48888765
No 437
>PRK05872 short chain dehydrogenase; Provisional
Probab=28.97 E-value=2.9e+02 Score=25.06 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=24.8
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
++||++|+.. .+|+ +=.++|+.|.+.|+.|.++.
T Consensus 7 l~gk~vlItG----as~g--IG~~ia~~l~~~G~~V~~~~ 40 (296)
T PRK05872 7 LAGKVVVVTG----AARG--IGAELARRLHARGAKLALVD 40 (296)
T ss_pred CCCCEEEEEC----CCch--HHHHHHHHHHHCCCEEEEEe
Confidence 6788877653 2232 56788999999999987765
No 438
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=28.60 E-value=2.3e+02 Score=24.28 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=40.9
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhC--CCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehh-----chhHH-
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAK-----GQETI- 145 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~--G~~V~vL~~~~G~~~~~v~~~L~~kll~r-gI~v~~~k-----~~~~i- 145 (282)
++|+++-||.+- =-++++++.|.+. |+++.... | ..+-+.+. |+++-.-- +...+
T Consensus 5 ~~v~lsv~d~dK----~~l~~~a~~l~~ll~Gf~l~AT~---g---------Ta~~L~~~~Gi~v~~vi~~~~gg~~~i~ 68 (142)
T PRK05234 5 KRIALIAHDHKK----DDLVAWVKAHKDLLEQHELYATG---T---------TGGLIQEATGLDVTRLLSGPLGGDQQIG 68 (142)
T ss_pred cEEEEEEeccch----HHHHHHHHHHHHHhcCCEEEEeC---h---------HHHHHHhccCCeeEEEEcCCCCCchhHH
Confidence 468888888874 3667999999999 98854332 3 23455556 88654211 22222
Q ss_pred H--HhhccCEEEE
Q 023401 146 N--TALKADLIVL 156 (282)
Q Consensus 146 ~--~a~~~DLVIa 156 (282)
+ ...++|+||.
T Consensus 69 ~~I~~g~i~lVIn 81 (142)
T PRK05234 69 ALIAEGKIDMLIF 81 (142)
T ss_pred HHHHcCceeEEEE
Confidence 2 3566888753
No 439
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=28.54 E-value=3.3e+02 Score=26.54 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=45.4
Q ss_pred cccEEEEE--ec-cCCCCCchHHHHHHHHHHHhCCCeEEEEec-cCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHh
Q 023401 73 KSKLVLLV--SH-ELSLSGGPLLLMELAFLLRGVGTKVNWITI-QKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (282)
Q Consensus 73 ~~KkILLI--SH-ELs~TGAPLlLleLA~~Lkq~G~~V~vL~~-~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a 148 (282)
+|++|.++ .| +...+ -+.-.++..+...|.+|.+.+- .+=...+++..-.++...+.|..+..... .-+..
T Consensus 168 ~g~ki~i~~~gd~~~~~~---~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d--~~ea~ 242 (335)
T PRK04523 168 RGKKYVLTWTYHPKPLNT---AVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHD--IDSAY 242 (335)
T ss_pred CCCEEEEEEeccCccccc---HHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcC--HHHHh
Confidence 78999664 34 11111 2444455556667999998883 21112333433333344556755542211 11356
Q ss_pred hccCEEEEechhc
Q 023401 149 LKADLIVLNTAVA 161 (282)
Q Consensus 149 ~~~DLVIaNT~v~ 161 (282)
.++|.|++.+...
T Consensus 243 ~~aDvvy~~~w~~ 255 (335)
T PRK04523 243 AGADVVYAKSWGA 255 (335)
T ss_pred CCCCEEEeceeec
Confidence 7899999977654
No 440
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=28.47 E-value=2.2e+02 Score=25.89 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=41.0
Q ss_pred ccEEEEEeccCCC---CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcC-----CceeehhchhHH
Q 023401 74 SKLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG-----VQVISAKGQETI 145 (282)
Q Consensus 74 ~KkILLISHELs~---TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rg-----I~v~~~k~~~~i 145 (282)
.+.+|+..|-... --..-.+++.++.+.+. ++.++...+|+.... +++...+.+ +.+..-.....+
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~~~~~~~~----l~~~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPNHPRTRPR----IREAGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEECCCChHHH----HHHHHHhhccCCCCEEEECCcCHHHH
Confidence 3456666675442 22344667777777654 455554333432222 344444433 222222223344
Q ss_pred H-HhhccCEEEEech
Q 023401 146 N-TALKADLIVLNTA 159 (282)
Q Consensus 146 ~-~a~~~DLVIaNT~ 159 (282)
. ....+|++|.++-
T Consensus 272 ~~l~~~ad~~v~~Sg 286 (363)
T cd03786 272 LLLLKNADLVLTDSG 286 (363)
T ss_pred HHHHHcCcEEEEcCc
Confidence 4 4556999999985
No 441
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=28.29 E-value=3.3e+02 Score=26.08 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=43.9
Q ss_pred ccccEEEEEeccC-CCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhc
Q 023401 72 MKSKLVLLVSHEL-SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (282)
Q Consensus 72 ~~~KkILLISHEL-s~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~ 150 (282)
.+|++|.+|.+-. |++ +-.++..+...|.+|.+.+-++=...+++ .+++.+.|..+..-... -..+..
T Consensus 148 l~g~~va~vGD~~~~~v-----~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~----~~~~~~~G~~v~~~~d~--~~a~~~ 216 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRT-----VHSLAEALTRFGVEVYLISPEELRMPKEI----LEELKAKGIKVRETESL--EEVIDE 216 (301)
T ss_pred CCCCEEEEEccCCCCcH-----HHHHHHHHHHcCCEEEEECCccccCCHHH----HHHHHHcCCEEEEECCH--HHHhCC
Confidence 6899999999543 443 33444445566999999883321111222 34555567665321111 125678
Q ss_pred cCEEEEec
Q 023401 151 ADLIVLNT 158 (282)
Q Consensus 151 ~DLVIaNT 158 (282)
+|.|+.-+
T Consensus 217 aDvvyt~~ 224 (301)
T TIGR00670 217 ADVLYVTR 224 (301)
T ss_pred CCEEEECC
Confidence 99999854
No 442
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=28.23 E-value=3.2e+02 Score=23.61 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=43.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (282)
+++|++|+++ -+| =+=.++++.|.+.|++|++...+ .+ . ...+.+++.+.+..+. +-....++.
T Consensus 7 l~~k~~lItG----as~--giG~~ia~~L~~~G~~vvl~~r~-~~---~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~ 75 (254)
T PRK08085 7 LAGKNILITG----SAQ--GIGFLLATGLAEYGAEIIINDIT-AE---R-AELAVAKLRQEGIKAHAAPFNVTHKQEVEA 75 (254)
T ss_pred CCCCEEEEEC----CCC--hHHHHHHHHHHHcCCEEEEEcCC-HH---H-HHHHHHHHHhcCCeEEEEecCCCCHHHHHH
Confidence 4678776663 222 25568888899999998876533 21 1 1223455554443332 112222222
Q ss_pred -------HhhccCEEEEechh
Q 023401 147 -------TALKADLIVLNTAV 160 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v 160 (282)
....+|.||.|...
T Consensus 76 ~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 76 AIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHHHHHhcCCCCEEEECCCc
Confidence 12458999998864
No 443
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.19 E-value=4.2e+02 Score=23.36 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=20.5
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEec
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~ 112 (282)
+|-+|.=+++...-.-++-.+...+++.|+++.+...
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~~ 38 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIGWNLRILDG 38 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcCcEEEEECC
Confidence 4444443443333334455555777788887766553
No 444
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=28.14 E-value=1.9e+02 Score=29.07 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=39.6
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH-cCCceeeh
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD-RGVQVISA 139 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~-rgI~v~~~ 139 (282)
+.+||+|++|+ +--.-+|+|..|.+.|.+|.++....-...+. .+.+++.+ .||+++..
T Consensus 348 ~~~gk~VvVVG-------gG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~---~l~~~l~~~~gI~i~~~ 407 (517)
T PRK15317 348 LFKGKRVAVIG-------GGNSGVEAAIDLAGIVKHVTVLEFAPELKADQ---VLQDKLRSLPNVTIITN 407 (517)
T ss_pred hcCCCEEEEEC-------CCHHHHHHHHHHHhcCCEEEEEEECccccccH---HHHHHHhcCCCcEEEEC
Confidence 35788999983 33467999999999999999987432211111 34555655 48887764
No 445
>PRK08643 acetoin reductase; Validated
Probab=28.13 E-value=3.9e+02 Score=23.04 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=39.7
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--ee-h-hchhH----H
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--IS-A-KGQET----I 145 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~~-~-k~~~~----i 145 (282)
+|++|+++ -+|+ +=.++++.|.+.|.+|+++..+ .+ -...+.+++.+.+..+ +. | ...++ +
T Consensus 2 ~k~~lItG----as~g--iG~~la~~l~~~G~~v~~~~r~-~~----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 70 (256)
T PRK08643 2 SKVALVTG----AGQG--IGFAIAKRLVEDGFKVAIVDYN-EE----TAQAAADKLSKDGGKAIAVKADVSDRDQVFAAV 70 (256)
T ss_pred CCEEEEEC----CCCh--HHHHHHHHHHHCCCEEEEEeCC-HH----HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 56555553 2222 4457888899999998777633 21 1112344444433222 21 1 22222 2
Q ss_pred HH----hhccCEEEEechh
Q 023401 146 NT----ALKADLIVLNTAV 160 (282)
Q Consensus 146 ~~----a~~~DLVIaNT~v 160 (282)
+. ..++|.||.|...
T Consensus 71 ~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 71 RQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 21 2468999998754
No 446
>PRK05920 aromatic acid decarboxylase; Validated
Probab=28.05 E-value=86 Score=28.61 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=29.3
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
++|+|++- .+.+.|-+-..++++.|++.|++|.++..+..
T Consensus 2 ~~krIllg---ITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A 41 (204)
T PRK05920 2 KMKRIVLA---ITGASGAIYGVRLLECLLAADYEVHLVISKAA 41 (204)
T ss_pred CCCEEEEE---EeCHHHHHHHHHHHHHHHHCCCEEEEEEChhH
Confidence 35666654 33443446788999999999999999996654
No 447
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=28.02 E-value=1e+02 Score=24.68 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=30.5
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~ 116 (282)
+--++.||+ +|..--+.+.++.+|+.|.++..+++..+.
T Consensus 48 ~dl~I~iS~----SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 48 KSVVILASH----SGNTKETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred CcEEEEEeC----CCCChHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 344566654 677778999999999999999999976553
No 448
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=27.89 E-value=3.1e+02 Score=26.88 Aligned_cols=95 Identities=22% Similarity=0.201 Sum_probs=55.4
Q ss_pred ccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHH
Q 023401 68 PLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINT 147 (282)
Q Consensus 68 ~~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~ 147 (282)
.++-++||+|-+|. .| ..=-.+|.-|++.|.+|.+....++. -.++..+.|+.+.+. -+.
T Consensus 11 ~~~~L~gktIgIIG-----~G--smG~AlA~~L~~sG~~Vvv~~r~~~~--------s~~~A~~~G~~~~s~-----~ea 70 (330)
T PRK05479 11 DLSLIKGKKVAIIG-----YG--SQGHAHALNLRDSGVDVVVGLREGSK--------SWKKAEADGFEVLTV-----AEA 70 (330)
T ss_pred ChhhhCCCEEEEEe-----eH--HHHHHHHHHHHHCCCEEEEEECCchh--------hHHHHHHCCCeeCCH-----HHH
Confidence 46778999999995 23 23456788889999988765433221 123444557755311 125
Q ss_pred hhccCEEEEechhc--hHHH-HHHhhccCCCCC-CceEEEeee
Q 023401 148 ALKADLIVLNTAVA--GKWL-DAVLKEDVPRVL-PNVLWWIHE 186 (282)
Q Consensus 148 a~~~DLVIaNT~v~--g~wl-~~l~~~~~~~~~-~pVIWWIHE 186 (282)
+.++|+|+.-+=-. ...+ +++. |..- .++|..-|=
T Consensus 71 a~~ADVVvLaVPd~~~~~V~~~~I~----~~Lk~g~iL~~a~G 109 (330)
T PRK05479 71 AKWADVIMILLPDEVQAEVYEEEIE----PNLKEGAALAFAHG 109 (330)
T ss_pred HhcCCEEEEcCCHHHHHHHHHHHHH----hcCCCCCEEEECCC
Confidence 67899999876422 3333 3333 3221 256765554
No 449
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=27.81 E-value=3.3e+02 Score=23.75 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=44.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (282)
+++|++|+++ |+--+=.++|+.|.+.|+.+++...... +-...+.+++.+.+-++. +-...+++.
T Consensus 5 ~~~k~~lItG------a~~gIG~~ia~~l~~~G~~vvi~~~~~~----~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~ 74 (261)
T PRK08936 5 LEGKVVVITG------GSTGLGRAMAVRFGKEKAKVVINYRSDE----EEANDVAEEIKKAGGEAIAVKGDVTVESDVVN 74 (261)
T ss_pred CCCCEEEEeC------CCChHHHHHHHHHHHCCCEEEEEeCCCH----HHHHHHHHHHHHcCCeEEEEEecCCCHHHHHH
Confidence 5788777653 2223567889999999999877653221 111234455554443322 112222222
Q ss_pred -------HhhccCEEEEechh
Q 023401 147 -------TALKADLIVLNTAV 160 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v 160 (282)
....+|.+|.|...
T Consensus 75 ~~~~~~~~~g~id~lv~~ag~ 95 (261)
T PRK08936 75 LIQTAVKEFGTLDVMINNAGI 95 (261)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 12458999988765
No 450
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=27.80 E-value=1.8e+02 Score=23.80 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh--hchhHHH-HhhccCEEEEech
Q 023401 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--KGQETIN-TALKADLIVLNTA 159 (282)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~--k~~~~i~-~a~~~DLVIaNT~ 159 (282)
+=-.+++.|.+.|++|..++.+.. .+.+ ..++.++.- ....++. .+..+|.||...-
T Consensus 10 vG~~l~~~L~~~~~~V~~~~R~~~--------~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 10 VGRALAKQLLRRGHEVTALVRSPS--------KAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSGG--------GHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred HHHHHHHHHHHCCCEEEEEecCch--------hccc---ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence 445688999999999999995533 2222 567777743 3334454 4667998887764
No 451
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=27.78 E-value=2.2e+02 Score=26.28 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=26.7
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEE
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~ 108 (282)
+.+|++||+| .|.=.||+ -+..++.++++.|.+|+
T Consensus 173 l~~G~rVLIV-DDvi~TG~--Tl~~~~~ll~~~ga~vv 207 (238)
T PRK08558 173 LKKGDRVLIV-DDIIRSGE--TQRALLDLARQAGADVV 207 (238)
T ss_pred cCCcCEEEEE-ecccccCH--HHHHHHHHHHHcCCEEE
Confidence 5689999988 56666777 45577788899998844
No 452
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=27.70 E-value=1.1e+02 Score=29.37 Aligned_cols=84 Identities=18% Similarity=0.176 Sum_probs=48.2
Q ss_pred ccccEEEEEeccCCCCCch---HHHHHHHHHHHhC-CCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehh-chhHH
Q 023401 72 MKSKLVLLVSHELSLSGGP---LLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAK-GQETI 145 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAP---LlLleLA~~Lkq~-G~~V~vL~~~~G~~~~~v~~~L~~kll~r-gI~v~~~k-~~~~i 145 (282)
..++-+|+..|-......| --+.++.+.|.+. +.+|++..-.-+ ..-.-+.+++.+. ++.++.-- +.+-+
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p----~~~~~i~~~l~~~~~v~~~~~l~~~~~l 253 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP----RGSDIIIEKLKKYDNVRLIEPLGYEEYL 253 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H----HHHHHHHHHHTT-TTEEEE----HHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc----hHHHHHHHHhcccCCEEEECCCCHHHHH
Confidence 5667788888988888867 4555666666665 667777763212 1112234444432 55555543 33445
Q ss_pred HHhhccCEEEEech
Q 023401 146 NTALKADLIVLNTA 159 (282)
Q Consensus 146 ~~a~~~DLVIaNT~ 159 (282)
..+..+|+||.|+-
T Consensus 254 ~ll~~a~~vvgdSs 267 (346)
T PF02350_consen 254 SLLKNADLVVGDSS 267 (346)
T ss_dssp HHHHHESEEEESSH
T ss_pred HHHhcceEEEEcCc
Confidence 57888999999986
No 453
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.55 E-value=3e+02 Score=26.72 Aligned_cols=83 Identities=19% Similarity=0.204 Sum_probs=47.6
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchh--HHH-HhhccC
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE--TIN-TALKAD 152 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~--~i~-~a~~~D 152 (282)
+|++|. ++.+|- ..|+.|.+.|++|.+.=.+..+ ....+...+.+.|+.+....... .+. ...++|
T Consensus 2 ~v~viG--~G~sG~-----s~a~~l~~~G~~V~~~D~~~~~----~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d 70 (459)
T PRK02705 2 IAHVIG--LGRSGI-----AAARLLKAQGWEVVVSDRNDSP----ELLERQQELEQEGITVKLGKPLELESFQPWLDQPD 70 (459)
T ss_pred eEEEEc--cCHHHH-----HHHHHHHHCCCEEEEECCCCch----hhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCC
Confidence 356665 444443 3589999999987654322221 12233455777899887542221 111 346799
Q ss_pred EEEEechhc--hHHHHHHh
Q 023401 153 LIVLNTAVA--GKWLDAVL 169 (282)
Q Consensus 153 LVIaNT~v~--g~wl~~l~ 169 (282)
+||....+. .+.+.+..
T Consensus 71 ~vv~s~gi~~~~~~~~~a~ 89 (459)
T PRK02705 71 LVVVSPGIPWDHPTLVELR 89 (459)
T ss_pred EEEECCCCCCCCHHHHHHH
Confidence 999987775 33444443
No 454
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=27.49 E-value=3.1e+02 Score=24.01 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=42.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~--~~k~~~~i~- 146 (282)
++||++|+.. |+.=+=..+|+.|.+.|++|+++..+ .. . .+++++...+.++ + +-...++++
T Consensus 6 l~~k~~lItG------as~gIG~aia~~l~~~G~~vv~~~~~-~~--~----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (251)
T PRK12481 6 LNGKVAIITG------CNTGLGQGMAIGLAKAGADIVGVGVA-EA--P----ETQAQVEALGRKFHFITADLIQQKDIDS 72 (251)
T ss_pred cCCCEEEEeC------CCchHHHHHHHHHHHCCCEEEEecCc-hH--H----HHHHHHHHcCCeEEEEEeCCCCHHHHHH
Confidence 5677766543 22235678899999999998776432 21 1 2344554444332 2 112222222
Q ss_pred -------HhhccCEEEEechh
Q 023401 147 -------TALKADLIVLNTAV 160 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v 160 (282)
....+|.+|.|..+
T Consensus 73 ~~~~~~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 73 IVSQAVEVMGHIDILINNAGI 93 (251)
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 23468999988754
No 455
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.44 E-value=1.9e+02 Score=22.48 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=13.3
Q ss_pred HhhccCEEEEechhchHHH
Q 023401 147 TALKADLIVLNTAVAGKWL 165 (282)
Q Consensus 147 ~a~~~DLVIaNT~v~g~wl 165 (282)
...++|+||.-|-...+-.
T Consensus 45 ~i~~aD~VIv~t~~vsH~~ 63 (97)
T PF10087_consen 45 KIKKADLVIVFTDYVSHNA 63 (97)
T ss_pred hcCCCCEEEEEeCCcChHH
Confidence 4677899988886654433
No 456
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=27.35 E-value=1.2e+02 Score=28.17 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=0.0
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC-------------------CchhhhhhhHHHHHHc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS-------------------EEDEVIYSLEHKMWDR 132 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~-------------------~~~~v~~~L~~kll~r 132 (282)
.+.++|.+++ .+.+|. +--+++..|...|..+..+...++. +...-+-...+...++
T Consensus 128 ~~A~rI~~~G--~g~S~~--vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ 203 (281)
T COG1737 128 AKARRIYFFG--LGSSGL--VASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKER 203 (281)
T ss_pred HcCCeEEEEE--echhHH--HHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHC
Q ss_pred CCceeehhchhHHHHhhccCEEEEech
Q 023401 133 GVQVISAKGQETINTALKADLIVLNTA 159 (282)
Q Consensus 133 gI~v~~~k~~~~i~~a~~~DLVIaNT~ 159 (282)
|++++.=+....-..+.-+|.++....
T Consensus 204 ga~vIaiT~~~~spla~~Ad~~L~~~~ 230 (281)
T COG1737 204 GAKVIAITDSADSPLAKLADIVLLVPV 230 (281)
T ss_pred CCcEEEEcCCCCCchhhhhceEEeccC
No 457
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=27.29 E-value=1.4e+02 Score=28.46 Aligned_cols=62 Identities=24% Similarity=0.192 Sum_probs=43.3
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
|+++|+-. +....+ +.=.+...|++.|.++.+..+-.++...+.+....+.+.+.++.++-.
T Consensus 23 r~lvVt~~-~~~~~~-~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 84 (366)
T PF00465_consen 23 RVLVVTDP-SLSKSG-LVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIA 84 (366)
T ss_dssp EEEEEEEH-HHHHHT-HHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEE
T ss_pred CEEEEECc-hHHhCc-cHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEE
Confidence 89999876 554444 667777888899999988886666555666666666776666666644
No 458
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=27.22 E-value=3.2e+02 Score=23.18 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC--------------CchhhhhhhHHHHHHcCCceee
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS--------------EEDEVIYSLEHKMWDRGVQVIS 138 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~--------------~~~~v~~~L~~kll~rgI~v~~ 138 (282)
+.++|.+++.-.|. .+...++..|...|.++..+...... +...-+..+.+...++|++++.
T Consensus 32 ~a~~I~i~G~G~S~----~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~ 107 (179)
T cd05005 32 NAKRIFVYGAGRSG----LVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVL 107 (179)
T ss_pred hCCeEEEEecChhH----HHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEE
Q ss_pred hhchhHHHHhhccCEEEE
Q 023401 139 AKGQETINTALKADLIVL 156 (282)
Q Consensus 139 ~k~~~~i~~a~~~DLVIa 156 (282)
=.....-..+.-+|.++.
T Consensus 108 IT~~~~s~la~~ad~~l~ 125 (179)
T cd05005 108 ITSNPDSPLAKLADVVVV 125 (179)
T ss_pred EECCCCCchHHhCCEEEE
No 459
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=27.16 E-value=4.2e+02 Score=26.03 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=46.6
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCc-eeehhchhHH-HHhhccCE
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ-VISAKGQETI-NTALKADL 153 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~-v~~~k~~~~i-~~a~~~DL 153 (282)
.|++++. +...-+.-.|++.+..|++.+-++.++...+|++.++...-+++...+.|++ .+.-.+...+ +...++|+
T Consensus 295 ~i~~vGr-l~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l~~aDv 373 (475)
T cd03813 295 VVGLIGR-VVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYLPKLDV 373 (475)
T ss_pred EEEEEec-cccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHHHhCCE
Confidence 4555554 3444556678899988888766666555333322333323344444455552 2222223333 35678999
Q ss_pred EEEechhc
Q 023401 154 IVLNTAVA 161 (282)
Q Consensus 154 VIaNT~v~ 161 (282)
++.-+...
T Consensus 374 ~vlpS~~E 381 (475)
T cd03813 374 LVLTSISE 381 (475)
T ss_pred EEeCchhh
Confidence 98876543
No 460
>PLN02285 methionyl-tRNA formyltransferase
Probab=27.15 E-value=3.1e+02 Score=26.56 Aligned_cols=76 Identities=17% Similarity=0.286 Sum_probs=41.2
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHh------CCCeEEEEeccCCCC----chhhhhhhHHHHHHcCCc---eeehh-
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRG------VGTKVNWITIQKPSE----EDEVIYSLEHKMWDRGVQ---VISAK- 140 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq------~G~~V~vL~~~~G~~----~~~v~~~L~~kll~rgI~---v~~~k- 140 (282)
.||+|+ |.|-+-..-.+.|.. .+++|+.+..+.+.. ......+.++..++.||+ ++...
T Consensus 7 ~kI~f~-------Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~ 79 (334)
T PLN02285 7 KRLVFL-------GTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEK 79 (334)
T ss_pred cEEEEE-------ECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccc
Confidence 457766 444333333333333 478888777553321 112223567888889999 54321
Q ss_pred --chhHHH--HhhccCEEEEe
Q 023401 141 --GQETIN--TALKADLIVLN 157 (282)
Q Consensus 141 --~~~~i~--~a~~~DLVIaN 157 (282)
..+.++ ...++|++|+-
T Consensus 80 ~~~~~~~~~l~~~~~Dliv~~ 100 (334)
T PLN02285 80 AGEEDFLSALRELQPDLCITA 100 (334)
T ss_pred cCCHHHHHHHHhhCCCEEEhh
Confidence 112222 35689999864
No 461
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=27.13 E-value=1.8e+02 Score=28.96 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhH----HH-HhhccCEEEEechhch
Q 023401 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQET----IN-TALKADLIVLNTAVAG 162 (282)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~----i~-~a~~~DLVIaNT~v~g 162 (282)
.=..+|+.|.+.|++|.++.+.... .. ..|+...+-....+ +. ...++|.+|.|.+++-
T Consensus 216 ~G~aiA~~l~~~Ga~V~~v~~~~~~---~~---------~~~~~~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d 279 (399)
T PRK05579 216 MGYALARAAARRGADVTLVSGPVNL---PT---------PAGVKRIDVESAQEMLDAVLAALPQADIFIMAAAVAD 279 (399)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCccc---cC---------CCCcEEEccCCHHHHHHHHHHhcCCCCEEEEcccccc
Confidence 5578999999999999998743210 00 11333333222222 21 2456999999988753
No 462
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=27.11 E-value=2e+02 Score=28.16 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=61.3
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh---------
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--------- 139 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~--------- 139 (282)
++-.++.+|+.+..+ +|-=.+=+=|++.+++.|.++++.+.. || .++.-.++..+..|+..+..
T Consensus 146 ~~~l~~a~VlYl~DN---aGEi~FD~vlie~ik~~~~~vv~vVrg-~P---IlnDaT~EDak~~~i~~i~~vittG~~~v 218 (285)
T COG1578 146 LELLKNASVLYLTDN---AGEIVFDKVLIEVIKELGKKVVVVVRG-GP---ILNDATMEDAKEAGIDEIAKVITTGSDIV 218 (285)
T ss_pred HHHhccCcEEEEecC---CccHHHHHHHHHHHHhcCCceEEEEcC-Cc---eechhhHHHHHHcCcchhheeecCCCCcc
Confidence 566677789999765 465555566677799999999999954 44 44455677777766554431
Q ss_pred -----hchhHHH-HhhccCEEEEechhchHHHH
Q 023401 140 -----KGQETIN-TALKADLIVLNTAVAGKWLD 166 (282)
Q Consensus 140 -----k~~~~i~-~a~~~DLVIaNT~v~g~wl~ 166 (282)
..-++|. +..++|+||+--.....-+.
T Consensus 219 Gi~l~d~s~Ef~~~f~~adlIIaKG~gNfE~Ls 251 (285)
T COG1578 219 GIWLEDVSEEFREAFESADLIIAKGQGNFETLS 251 (285)
T ss_pred eeeHHhccHHHHHHhccCCEEEecCcccccccc
Confidence 2333443 67789999998776554443
No 463
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.10 E-value=2e+02 Score=25.83 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=25.4
Q ss_pred cccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 69 ~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
-.+|+||.+|+..=-.| .=+=.++|+.|.+.|+.|.+..
T Consensus 5 ~~~~~~k~~lItGas~~----~GIG~aia~~la~~G~~V~l~~ 43 (272)
T PRK08159 5 SGLMAGKRGLILGVANN----RSIAWGIAKACRAAGAELAFTY 43 (272)
T ss_pred cccccCCEEEEECCCCC----CcHHHHHHHHHHHCCCEEEEEc
Confidence 46788986665421100 2255688999999999987553
No 464
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=27.09 E-value=2.2e+02 Score=27.95 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=11.0
Q ss_pred hhccCEEEEechhchHHHHH
Q 023401 148 ALKADLIVLNTAVAGKWLDA 167 (282)
Q Consensus 148 a~~~DLVIaNT~v~g~wl~~ 167 (282)
..++|.||+= -.|+.+|.
T Consensus 104 ~~~~D~Iiav--GGGS~iD~ 121 (395)
T PRK15454 104 ESGCDGVIAF--GGGSVLDA 121 (395)
T ss_pred hcCcCEEEEe--CChHHHHH
Confidence 4678988873 33555553
No 465
>PLN02712 arogenate dehydrogenase
Probab=27.03 E-value=1.9e+02 Score=30.69 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=38.0
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccC
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~D 152 (282)
+.++|.+|+ +++=|. .+|+.|++.|++|.+.... .. ..+..+.|+....+. ..+ ...++|
T Consensus 51 ~~~kIgIIG--~G~mG~-----slA~~L~~~G~~V~~~dr~-~~---------~~~A~~~Gv~~~~d~--~e~-~~~~aD 110 (667)
T PLN02712 51 TQLKIAIIG--FGNYGQ-----FLAKTLISQGHTVLAHSRS-DH---------SLAARSLGVSFFLDP--HDL-CERHPD 110 (667)
T ss_pred CCCEEEEEc--cCHHHH-----HHHHHHHHCCCEEEEEeCC-HH---------HHHHHHcCCEEeCCH--HHH-hhcCCC
Confidence 345799997 444444 5778889999887665422 21 133445566554331 111 113467
Q ss_pred EEEEechh
Q 023401 153 LIVLNTAV 160 (282)
Q Consensus 153 LVIaNT~v 160 (282)
+||..|=.
T Consensus 111 vViLavP~ 118 (667)
T PLN02712 111 VILLCTSI 118 (667)
T ss_pred EEEEcCCH
Confidence 77777654
No 466
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=27.00 E-value=2.5e+02 Score=25.43 Aligned_cols=19 Identities=5% Similarity=0.036 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhCCCeEEEE
Q 023401 92 LLMELAFLLRGVGTKVNWI 110 (282)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL 110 (282)
++-.+...+++.|+++.+.
T Consensus 85 l~~~i~~~~~~~g~~~~~~ 103 (327)
T PRK10339 85 IRHGIETQCEKLGIELTNC 103 (327)
T ss_pred HHHHHHHHHHHCCCEEEEe
Confidence 3445567788889887654
No 467
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=26.93 E-value=4.9e+02 Score=24.43 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=47.9
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce-eehh----chhHHHHh
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-ISAK----GQETINTA 148 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v-~~~k----~~~~i~~a 148 (282)
++.+++..--++..=++-.|++.+..|++.+.++.++...+|+..+ .+++.+.+.|..- +.-. ..+.....
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~----~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l 267 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRI----LLEEMREKYNLQDRVELLGAVPHERVRDVL 267 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHH----HHHHHHHHhCCCCeEEEeCCCCHHHHHHHH
Confidence 4445555556666666788999999888766666655533343222 2455555555421 2111 22333467
Q ss_pred hccCEEEEechh
Q 023401 149 LKADLIVLNTAV 160 (282)
Q Consensus 149 ~~~DLVIaNT~v 160 (282)
..+|+.+.-+..
T Consensus 268 ~~ad~~v~pS~~ 279 (398)
T cd03796 268 VQGHIFLNTSLT 279 (398)
T ss_pred HhCCEEEeCChh
Confidence 889998876654
No 468
>PRK06849 hypothetical protein; Provisional
Probab=26.87 E-value=2.1e+02 Score=27.37 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=26.8
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~ 114 (282)
.|+||+++ +|+| .-+++|+.|++.|++|+++...+
T Consensus 4 ~~~VLI~G-----~~~~-~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITG-----ARAP-AALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeC-----CCcH-HHHHHHHHHHHCCCEEEEEeCCc
Confidence 47788773 3333 57899999999999999887553
No 469
>PRK00208 thiG thiazole synthase; Reviewed
Probab=26.86 E-value=3.1e+02 Score=26.25 Aligned_cols=86 Identities=23% Similarity=0.188 Sum_probs=56.3
Q ss_pred EEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----------------------CchhhhhhhHHHHHHc-C
Q 023401 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----------------------EEDEVIYSLEHKMWDR-G 133 (282)
Q Consensus 77 ILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----------------------~~~~v~~~L~~kll~r-g 133 (282)
+=+|..+-++---+.-.++.|+.|.+.|+.|.-.+..+.. ..+...+.+.+.+.+. +
T Consensus 96 lEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~ 175 (250)
T PRK00208 96 LEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQAD 175 (250)
T ss_pred EEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcC
Confidence 5577888888899999999999999999998844433221 1111123334455553 7
Q ss_pred CceeehhchhHHH-----HhhccCEEEEechhch
Q 023401 134 VQVISAKGQETIN-----TALKADLIVLNTAVAG 162 (282)
Q Consensus 134 I~v~~~k~~~~i~-----~a~~~DLVIaNT~v~g 162 (282)
++|+-+=+..+=+ +...+|-|++||++.-
T Consensus 176 vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 176 VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 8888663332211 3467999999999863
No 470
>PRK07791 short chain dehydrogenase; Provisional
Probab=26.77 E-value=4.8e+02 Score=23.57 Aligned_cols=85 Identities=13% Similarity=0.166 Sum_probs=46.3
Q ss_pred cccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC----CchhhhhhhHHHHHHcCCcee----ehhch
Q 023401 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----EEDEVIYSLEHKMWDRGVQVI----SAKGQ 142 (282)
Q Consensus 71 f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~----~~~~v~~~L~~kll~rgI~v~----~~k~~ 142 (282)
++++|.+|+.. |+.=+=.++|+.|.+.|++|.++..+.+. ...+-...+.+++.+.|.++. +-...
T Consensus 3 ~l~~k~~lITG------as~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~ 76 (286)
T PRK07791 3 LLDGRVVIVTG------AGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADW 76 (286)
T ss_pred ccCCCEEEEEC------CCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCH
Confidence 56788777654 22224568888898999998877533210 011122234455555554432 11222
Q ss_pred hH----HH----HhhccCEEEEechhc
Q 023401 143 ET----IN----TALKADLIVLNTAVA 161 (282)
Q Consensus 143 ~~----i~----~a~~~DLVIaNT~v~ 161 (282)
++ ++ ....+|.+|.|..+.
T Consensus 77 ~~v~~~~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 77 DGAANLVDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 22 22 235689999987653
No 471
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=26.69 E-value=1.3e+02 Score=22.83 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=27.7
Q ss_pred EEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 78 LLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 78 LLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
+.+...-+..|.+.+-.+||..|.+.|.+|.++-
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d 35 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLID 35 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4555666778999999999999998898877775
No 472
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=26.67 E-value=3.6e+02 Score=23.53 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=24.6
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
+++|++|+.. |+.-+=.++++.|.+.|++|.++.
T Consensus 4 ~~~k~vlVtG------as~gIG~~ia~~l~~~G~~V~~~~ 37 (263)
T PRK06200 4 LHGQVALITG------GGSGIGRALVERFLAEGARVAVLE 37 (263)
T ss_pred CCCCEEEEeC------CCchHHHHHHHHHHHCCCEEEEEe
Confidence 5778777654 223355788999999999987765
No 473
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=26.61 E-value=3.8e+02 Score=25.35 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=39.3
Q ss_pred CCCeEEEEecc-CCCCchhhhhhhHHHHHHcCCceee-h-------hchhHHH--HhhccCEEEEechhc---hHHHHHH
Q 023401 103 VGTKVNWITIQ-KPSEEDEVIYSLEHKMWDRGVQVIS-A-------KGQETIN--TALKADLIVLNTAVA---GKWLDAV 168 (282)
Q Consensus 103 ~G~~V~vL~~~-~G~~~~~v~~~L~~kll~rgI~v~~-~-------k~~~~i~--~a~~~DLVIaNT~v~---g~wl~~l 168 (282)
.+..+.++... +.++...+..++++...++|+.+.. . +..+.++ ...++|.|++...-. .+.++++
T Consensus 22 ~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a 101 (336)
T PRK15408 22 AAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRA 101 (336)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHH
Confidence 34444444422 2233444445555555555555543 1 0111222 356789888864322 3455555
Q ss_pred hhccCCCCCCceEEEeeec
Q 023401 169 LKEDVPRVLPNVLWWIHEM 187 (282)
Q Consensus 169 ~~~~~~~~~~pVIWWIHE~ 187 (282)
.+... |||.|=.+.
T Consensus 102 ~~~gI-----pVV~~d~~~ 115 (336)
T PRK15408 102 MQRGV-----KVLTWDSDT 115 (336)
T ss_pred HHCCC-----eEEEeCCCC
Confidence 43344 777776553
No 474
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.53 E-value=2.7e+02 Score=27.84 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=45.2
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhccC
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~D 152 (282)
++|+|+++. ++.|| ...+++|++ |++|.+.= .+...... + .++. ....... . ......++|
T Consensus 5 ~~~~v~v~G--~G~sG-----~a~~~~L~~-g~~v~v~D-~~~~~~~~----~-~~~~--~~~~~~~-~--~~~~~~~~d 65 (454)
T PRK01368 5 TKQKIGVFG--LGKTG-----ISVYEELQN-KYDVIVYD-DLKANRDI----F-EELY--SKNAIAA-L--SDSRWQNLD 65 (454)
T ss_pred CCCEEEEEe--ecHHH-----HHHHHHHhC-CCEEEEEC-CCCCchHH----H-Hhhh--cCceecc-C--ChhHhhCCC
Confidence 478999999 88888 456677885 99876533 22211001 1 1111 1222211 1 112245799
Q ss_pred EEEEechhc--hHHHHHHhhccC
Q 023401 153 LIVLNTAVA--GKWLDAVLKEDV 173 (282)
Q Consensus 153 LVIaNT~v~--g~wl~~l~~~~~ 173 (282)
+||.+..+. .+.+....+.+.
T Consensus 66 ~vV~SPgI~~~~p~~~~a~~~gi 88 (454)
T PRK01368 66 KIVLSPGIPLTHEIVKIAKNFNI 88 (454)
T ss_pred EEEECCCCCCCCHHHHHHHHCCC
Confidence 999999886 345555543344
No 475
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=26.51 E-value=3.5e+02 Score=25.76 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=40.3
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhC--CCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh------h--chhH
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA------K--GQET 144 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~--G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~------k--~~~~ 144 (282)
|-++|+|+. |. -|-.|....++. ++++.++.+.+++ +.....+.|||++.- + ....
T Consensus 91 ri~vl~Sg~----g~--nl~al~~~~~~~~~~~~i~~visn~~~--------~~~lA~~~gIp~~~~~~~~~~~~~~~~~ 156 (286)
T PRK13011 91 KVLIMVSKF----DH--CLNDLLYRWRIGELPMDIVGVVSNHPD--------LEPLAAWHGIPFHHFPITPDTKPQQEAQ 156 (286)
T ss_pred eEEEEEcCC----cc--cHHHHHHHHHcCCCCcEEEEEEECCcc--------HHHHHHHhCCCEEEeCCCcCchhhhHHH
Confidence 788899883 55 334444444443 6788887755552 234466679998741 1 1111
Q ss_pred H-H--HhhccCEEEEe
Q 023401 145 I-N--TALKADLIVLN 157 (282)
Q Consensus 145 i-~--~a~~~DLVIaN 157 (282)
+ + ...++|+|++-
T Consensus 157 ~~~~l~~~~~Dlivla 172 (286)
T PRK13011 157 VLDVVEESGAELVVLA 172 (286)
T ss_pred HHHHHHHhCcCEEEEe
Confidence 1 1 24579999864
No 476
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=26.50 E-value=4.7e+02 Score=25.88 Aligned_cols=82 Identities=24% Similarity=0.189 Sum_probs=50.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccC--CC----------CchhhhhhhHHHHHHcCCceeeh
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK--PS----------EEDEVIYSLEHKMWDRGVQVISA 139 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~--G~----------~~~~v~~~L~~kll~rgI~v~~~ 139 (282)
-.+|+|++|. |+| .=+..|..|++.|++|.++-... |+ ...++.....+.+.+.|+.+...
T Consensus 141 ~~~~~VvIIG------aGp-AGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~ 213 (471)
T PRK12810 141 RTGKKVAVVG------SGP-AGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTN 213 (471)
T ss_pred CCCCEEEEEC------cCH-HHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeC
Confidence 3688999995 233 44678999999999988876321 11 12233333456677778887754
Q ss_pred hchh---HHH-HhhccCEEEEechh
Q 023401 140 KGQE---TIN-TALKADLIVLNTAV 160 (282)
Q Consensus 140 k~~~---~i~-~a~~~DLVIaNT~v 160 (282)
.... ..+ ....+|.||..|-.
T Consensus 214 ~~v~~~~~~~~~~~~~d~vvlAtGa 238 (471)
T PRK12810 214 VEVGKDITAEELLAEYDAVFLGTGA 238 (471)
T ss_pred CEECCcCCHHHHHhhCCEEEEecCC
Confidence 3211 111 23479999999865
No 477
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=26.47 E-value=96 Score=29.90 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce
Q 023401 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV 136 (282)
Q Consensus 92 lLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v 136 (282)
-.++|.+.|++.|..|..++++..... ...++-|.+.|.+.
T Consensus 149 ~al~ly~~l~~~G~kIf~VSgR~e~~r----~aT~~NL~kaGy~~ 189 (275)
T TIGR01680 149 ETLKNYNKLVSLGFKIIFLSGRLKDKQ----AVTEANLKKAGYHT 189 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhHH----HHHHHHHHHcCCCC
Confidence 468899999999999999998866321 22456677778864
No 478
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=26.43 E-value=1.8e+02 Score=27.87 Aligned_cols=97 Identities=20% Similarity=0.108 Sum_probs=54.9
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhHHHHhhcc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~i~~a~~~ 151 (282)
++||+|-+|. ++. .=-.+|.-|++.|.++.+.....+. . .+++.+.|+.+.+ . -+.+.++
T Consensus 1 l~~kkIgiIG--~G~-----mG~AiA~~L~~sG~~Viv~~~~~~~-------~-~~~a~~~Gv~~~s---~--~ea~~~A 60 (314)
T TIGR00465 1 LKGKTVAIIG--YGS-----QGHAQALNLRDSGLNVIVGLRKGGA-------S-WKKATEDGFKVGT---V--EEAIPQA 60 (314)
T ss_pred CCcCEEEEEe--EcH-----HHHHHHHHHHHCCCeEEEEECcChh-------h-HHHHHHCCCEECC---H--HHHHhcC
Confidence 4688899885 222 2334678889999886544433221 1 2445566876532 1 1246789
Q ss_pred CEEEEechhc---hHHHHHHhhccCCCCCCceEEEeeeccccc
Q 023401 152 DLIVLNTAVA---GKWLDAVLKEDVPRVLPNVLWWIHEMRGHY 191 (282)
Q Consensus 152 DLVIaNT~v~---g~wl~~l~~~~~~~~~~pVIWWIHE~r~~Y 191 (282)
|+|++.+=-. ..+.+++. +..+ ..++|...|=-.-+|
T Consensus 61 DiVvLaVpp~~~~~~v~~ei~-~~l~--~g~iVs~aaG~~i~~ 100 (314)
T TIGR00465 61 DLIMNLLPDEVQHEVYEAEIQ-PLLK--EGKTLGFSHGFNIHF 100 (314)
T ss_pred CEEEEeCCcHhHHHHHHHHHH-hhCC--CCcEEEEeCCccHhh
Confidence 9999887532 33444443 2221 126888887655333
No 479
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.37 E-value=1.8e+02 Score=26.23 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=24.2
Q ss_pred ccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 70 ~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
+||+||.+|+..---++ =.=..+|+.|-+.|+.|++..
T Consensus 2 ~~l~~k~~lITGas~~~----GIG~aia~~la~~G~~vil~~ 39 (262)
T PRK07984 2 GFLSGKRILVTGVASKL----SIAYGIAQAMHREGAELAFTY 39 (262)
T ss_pred cccCCCEEEEeCCCCCc----cHHHHHHHHHHHCCCEEEEEe
Confidence 45788877665422111 133578888889999987654
No 480
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=26.37 E-value=1.1e+02 Score=26.90 Aligned_cols=36 Identities=28% Similarity=0.233 Sum_probs=22.1
Q ss_pred EEEEEeccC-CCCCc--hHHHHHHHHHHH-hCCCeEEEEe
Q 023401 76 LVLLVSHEL-SLSGG--PLLLMELAFLLR-GVGTKVNWIT 111 (282)
Q Consensus 76 kILLISHEL-s~TGA--PLlLleLA~~Lk-q~G~~V~vL~ 111 (282)
|||+|+... ..-.. |-..--|+.+|+ +.|++|.+.-
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~ 40 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTE 40 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEe
Confidence 578887772 32233 456666777777 6677777655
No 481
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=26.28 E-value=2.4e+02 Score=24.94 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEec--cCCCCchhhhhhhHHHHHHc-CCceeehhchhHH---H---HhhccCEEEEechh
Q 023401 91 LLLMELAFLLRGVGTKVNWITI--QKPSEEDEVIYSLEHKMWDR-GVQVISAKGQETI---N---TALKADLIVLNTAV 160 (282)
Q Consensus 91 LlLleLA~~Lkq~G~~V~vL~~--~~G~~~~~v~~~L~~kll~r-gI~v~~~k~~~~i---~---~a~~~DLVIaNT~v 160 (282)
.-..++++.+.+.|++-.++++ +.|..++. ...+.+++.+. ++|++-.=+..++ . ....+|.|+++|+.
T Consensus 153 ~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~-~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 153 RDPVEWAREAEQLGAGEILLNSIDRDGTMKGY-DLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCccCCcCCC-CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 3457999999999999888885 33322222 34555666654 7888855333322 2 23469999999974
No 482
>PRK08589 short chain dehydrogenase; Validated
Probab=26.22 E-value=3.9e+02 Score=23.67 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=43.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHH--
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETI-- 145 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~----~~k~~~~i-- 145 (282)
+++|++|+..- +.=+=.++|+.|.+.|+.|.++... .. . ..+.+++.+.+.++. +-....++
T Consensus 4 l~~k~vlItGa------s~gIG~aia~~l~~~G~~vi~~~r~-~~----~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 71 (272)
T PRK08589 4 LENKVAVITGA------STGIGQASAIALAQEGAYVLAVDIA-EA----V-SETVDKIKSNGGKAKAYHVDISDEQQVKD 71 (272)
T ss_pred CCCCEEEEECC------CchHHHHHHHHHHHCCCEEEEEeCc-HH----H-HHHHHHHHhcCCeEEEEEeecCCHHHHHH
Confidence 56787666422 2235578899999999999888643 21 1 123444544332222 11222222
Q ss_pred --H----HhhccCEEEEechhc
Q 023401 146 --N----TALKADLIVLNTAVA 161 (282)
Q Consensus 146 --~----~a~~~DLVIaNT~v~ 161 (282)
+ ....+|.+|.|..+.
T Consensus 72 ~~~~~~~~~g~id~li~~Ag~~ 93 (272)
T PRK08589 72 FASEIKEQFGRVDVLFNNAGVD 93 (272)
T ss_pred HHHHHHHHcCCcCEEEECCCCC
Confidence 2 234589999998653
No 483
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=26.18 E-value=4.8e+02 Score=25.96 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=51.6
Q ss_pred cccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC------------CchhhhhhhHHHHHHcCCceeehh
Q 023401 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS------------EEDEVIYSLEHKMWDRGVQVISAK 140 (282)
Q Consensus 73 ~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~------------~~~~v~~~L~~kll~rgI~v~~~k 140 (282)
.+|+|++|. |+|.-| ..|..|++.|++|.++-..... ...++.....+.+.+.|+.+....
T Consensus 140 ~~~~V~IIG------~GpaGl-~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~ 212 (467)
T TIGR01318 140 TGKRVAVIG------AGPAGL-ACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC 212 (467)
T ss_pred CCCeEEEEC------CCHHHH-HHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence 688999984 566554 6889999999998777422110 122333334566777898877542
Q ss_pred ch-h--HHH-HhhccCEEEEechhc
Q 023401 141 GQ-E--TIN-TALKADLIVLNTAVA 161 (282)
Q Consensus 141 ~~-~--~i~-~a~~~DLVIaNT~v~ 161 (282)
.. + .++ ....+|.||..|-+.
T Consensus 213 ~v~~~~~~~~~~~~~D~vilAtGa~ 237 (467)
T TIGR01318 213 EVGRDISLDDLLEDYDAVFLGVGTY 237 (467)
T ss_pred EeCCccCHHHHHhcCCEEEEEeCCC
Confidence 11 1 122 234799999988764
No 484
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.16 E-value=45 Score=27.66 Aligned_cols=12 Identities=42% Similarity=1.074 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHH
Q 023401 16 RWILALLIMLSI 27 (282)
Q Consensus 16 ~~~~~~~~~~~~ 27 (282)
||.|++++++.+
T Consensus 1 RW~l~~iii~~i 12 (130)
T PF12273_consen 1 RWVLFAIIIVAI 12 (130)
T ss_pred CeeeHHHHHHHH
Confidence 566655544443
No 485
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=26.16 E-value=1.6e+02 Score=27.17 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=42.7
Q ss_pred ccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh-----------ch
Q 023401 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----------GQ 142 (282)
Q Consensus 74 ~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k-----------~~ 142 (282)
+|+|||. .+.+-|-+=..+|.+.|++ |++|.++..+... .++ ...-+....++..+. ..
T Consensus 19 ~k~Illg---VtGSIAAyk~~~lvr~L~~-g~~V~VvmT~~A~---~FI---~p~~l~~~~~v~td~~~~~~~~~~~~~~ 88 (209)
T PLN02496 19 KPRILLA---ASGSVAAIKFGNLCHCFSE-WAEVRAVVTKASL---HFI---DRASLPKDVTLYTDEDEWSSWNKIGDSV 88 (209)
T ss_pred CCEEEEE---EeCHHHHHHHHHHHHHhcC-CCeEEEEEChhHh---hhc---CHHHcCCCCcEEeCcccccccccCCCCc
Confidence 5666654 2334455556788899985 9999888866552 222 222222222344331 11
Q ss_pred hHHHHhhccCEEEEech
Q 023401 143 ETINTALKADLIVLNTA 159 (282)
Q Consensus 143 ~~i~~a~~~DLVIaNT~ 159 (282)
+-|+.+..+|++++-=+
T Consensus 89 ~HI~La~wAD~~vVaPa 105 (209)
T PLN02496 89 LHIELRRWADVMVIAPL 105 (209)
T ss_pred chhHhhhhhCEEEEEeC
Confidence 13456778999986433
No 486
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=26.15 E-value=37 Score=32.19 Aligned_cols=14 Identities=50% Similarity=0.850 Sum_probs=12.4
Q ss_pred cccEEEEEeccCCC
Q 023401 73 KSKLVLLVSHELSL 86 (282)
Q Consensus 73 ~~KkILLISHELs~ 86 (282)
+||.||+||||++.
T Consensus 188 eg~tIl~vtHDL~~ 201 (254)
T COG1121 188 EGKTVLMVTHDLGL 201 (254)
T ss_pred CCCEEEEEeCCcHH
Confidence 39999999999974
No 487
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=25.98 E-value=1.2e+02 Score=28.80 Aligned_cols=74 Identities=15% Similarity=0.296 Sum_probs=39.2
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehhchhH--HH--H
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQET--IN--T 147 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k~~~~--i~--~ 147 (282)
..||+||+|+ |=++|. ||--|.....+|+|+=. +..++..+.+...+.|+++-...+.-. +. .
T Consensus 43 L~gk~il~lG-DDDLtS-------lA~al~~~~~~I~VvDi-----DeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~ 109 (243)
T PF01861_consen 43 LEGKRILFLG-DDDLTS-------LALALTGLPKRITVVDI-----DERLLDFINRVAEEEGLPIEAVHYDLRDPLPEEL 109 (243)
T ss_dssp STT-EEEEES--TT-HH-------HHHHHHT--SEEEEE-S------HHHHHHHHHHHHHHT--EEEE---TTS---TTT
T ss_pred ccCCEEEEEc-CCcHHH-------HHHHhhCCCCeEEEEEc-----CHHHHHHHHHHHHHcCCceEEEEecccccCCHHH
Confidence 5799999999 445544 33334455667766642 346777777777778988655444433 33 4
Q ss_pred hhccCEEEEec
Q 023401 148 ALKADLIVLNT 158 (282)
Q Consensus 148 a~~~DLVIaNT 158 (282)
..+||.++.+=
T Consensus 110 ~~~fD~f~TDP 120 (243)
T PF01861_consen 110 RGKFDVFFTDP 120 (243)
T ss_dssp SS-BSEEEE--
T ss_pred hcCCCEEEeCC
Confidence 68899999984
No 488
>PRK00955 hypothetical protein; Provisional
Probab=25.96 E-value=1.5e+02 Score=31.55 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=33.6
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEe
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~ 111 (282)
.|||||=|+.----|.-+.-++++|.+.|+.|-++.
T Consensus 15 d~i~v~gdayvdhp~fg~a~i~r~L~~~G~~v~ii~ 50 (620)
T PRK00955 15 DFILVTGDAYVDHPSFGTAIIGRVLEAEGFRVGIIA 50 (620)
T ss_pred CEEEEeCcccccCCccHHHHHHHHHHHCCCEEEEec
Confidence 489999999999999999999999999999998886
No 489
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=25.90 E-value=1.9e+02 Score=22.87 Aligned_cols=53 Identities=30% Similarity=0.330 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHH----cCCceeehhchhHHHHhhccCEEEEech
Q 023401 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD----RGVQVISAKGQETINTALKADLIVLNTA 159 (282)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~----rgI~v~~~k~~~~i~~a~~~DLVIaNT~ 159 (282)
-+++++.|++.|.+|.+-= |- + -.....+ .+++..++. -.....+|.||++|-
T Consensus 19 ~~~l~~~L~~~g~~V~~~D---P~----v---~~~~~~~~~~~~~~~~~~~~----~~~~~~~D~vvl~t~ 75 (106)
T PF03720_consen 19 ALELIEELKERGAEVSVYD---PY----V---DEEEIKELGKLEGVEVCDDL----EEALKGADAVVLATD 75 (106)
T ss_dssp HHHHHHHHHHTT-EEEEE----TT----S---HHHHHHHHCHHHCEEEESSH----HHHHTTESEEEESS-
T ss_pred HHHHHHHHHHCCCEEEEEC---Cc----c---ChHHHHhhCCccceEEecCH----HHHhcCCCEEEEEec
Confidence 3688999999999866543 31 1 1112222 466666541 124578999999986
No 490
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=25.79 E-value=1.5e+02 Score=27.08 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=18.8
Q ss_pred HHHHHH---HHHHhCCCeEEEEeccCC
Q 023401 92 LLMELA---FLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 92 lLleLA---~~Lkq~G~~V~vL~~~~G 115 (282)
-+.|++ ..|++.|++|.+.+.+++
T Consensus 23 ~~~E~~~p~~~l~~aG~~VdiaS~~g~ 49 (231)
T cd03147 23 FFSEALHPFNVFREAGFEVDFVSETGT 49 (231)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 566665 789999999999985543
No 491
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=25.56 E-value=3.5e+02 Score=24.25 Aligned_cols=81 Identities=12% Similarity=0.036 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCceeeh----hchhHH----H--HhhccCEEEEech--h
Q 023401 93 LMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA----KGQETI----N--TALKADLIVLNTA--V 160 (282)
Q Consensus 93 LleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~----k~~~~i----~--~a~~~DLVIaNT~--v 160 (282)
...++.+|++.|.+-+.+.....+...+....+.+.+.+.|+++... .+...+ . ...++|.|+.... -
T Consensus 122 ~~~~~~~l~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~~~~~~~ 201 (336)
T cd06360 122 AAPMGKYAADDGYKKVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVFFAGGD 201 (336)
T ss_pred HHHHHHHHHHcCCCeEEEEeccchhhHHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEEeccccc
Confidence 44566778877876444443334445556667778888889988743 111122 2 2566899987533 3
Q ss_pred chHHHHHHhhccC
Q 023401 161 AGKWLDAVLKEDV 173 (282)
Q Consensus 161 ~g~wl~~l~~~~~ 173 (282)
+...++++.+..+
T Consensus 202 ~~~~~~~~~~~g~ 214 (336)
T cd06360 202 AIKFVKQYDAAGL 214 (336)
T ss_pred HHHHHHHHHHcCC
Confidence 4667788764444
No 492
>PRK06139 short chain dehydrogenase; Provisional
Probab=25.50 E-value=2.7e+02 Score=26.29 Aligned_cols=78 Identities=14% Similarity=0.231 Sum_probs=43.4
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCcee----ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI----SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~----~~k~~~~i~- 146 (282)
+++|.||+.+ -+|+ +=.++|+.|.+.|++|+++. +..+. . ..+.+++.+.|.++. +-...+++.
T Consensus 5 l~~k~vlITG----As~G--IG~aia~~la~~G~~Vvl~~-R~~~~---l-~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~ 73 (330)
T PRK06139 5 LHGAVVVITG----ASSG--IGQATAEAFARRGARLVLAA-RDEEA---L-QAVAEECRALGAEVLVVPTDVTDADQVKA 73 (330)
T ss_pred CCCCEEEEcC----CCCH--HHHHHHHHHHHCCCEEEEEE-CCHHH---H-HHHHHHHHhcCCcEEEEEeeCCCHHHHHH
Confidence 4567666542 2222 56788999999999987665 32221 1 123445555554432 112223332
Q ss_pred -------HhhccCEEEEechh
Q 023401 147 -------TALKADLIVLNTAV 160 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v 160 (282)
....+|.+|.|..+
T Consensus 74 ~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 74 LATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHHHHhcCCCCEEEECCCc
Confidence 12568999999764
No 493
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=25.50 E-value=83 Score=25.77 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhC-CCeEEE
Q 023401 92 LLMELAFLLRGV-GTKVNW 109 (282)
Q Consensus 92 lLleLA~~Lkq~-G~~V~v 109 (282)
....||..|++. |.+|.+
T Consensus 17 ~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 17 WVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred HHHHHHHHHHhccCCceee
Confidence 577888888888 888774
No 494
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=25.34 E-value=3.8e+02 Score=25.61 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=35.1
Q ss_pred CccccccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCC-CchhhhhhhHHHHHHcCCceee
Q 023401 67 SPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDRGVQVIS 138 (282)
Q Consensus 67 ~~~~f~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~-~~~~v~~~L~~kll~rgI~v~~ 138 (282)
+..+|++...+ +++|--|.| .+...+...+.|....++....-| .+|. -+..++.+.||++..
T Consensus 108 ~a~~~i~~g~~-ILT~~~S~t-----v~~~l~~a~~~~~~f~V~v~EsrP~~~G~---~~a~~L~~~gI~vtl 171 (301)
T TIGR00511 108 IGAKRIRDGDV-VMTHCNSEA-----ALSVIKTAFEQGKDIEVIATETRPRKQGH---ITAKELRDYGIPVTL 171 (301)
T ss_pred HHHHHcCCCCE-EEEECCcHH-----HHHHHHHHHHcCCcEEEEEecCCCcchHH---HHHHHHHHCCCCEEE
Confidence 45566665554 445765533 233334444456655555533333 3442 467888889999873
No 495
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=25.31 E-value=1.2e+02 Score=25.60 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=27.7
Q ss_pred cEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCC
Q 023401 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (282)
Q Consensus 75 KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G 115 (282)
.-+++|| .+|.-=-+++.++..|+.|.++..+++..+
T Consensus 81 D~~i~iS----~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 81 DVLLGIS----TSGNSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CEEEEEc----CCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3455554 466666788999999999999999996655
No 496
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=25.26 E-value=2.3e+02 Score=27.04 Aligned_cols=73 Identities=22% Similarity=0.202 Sum_probs=44.9
Q ss_pred EEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcC----Cceeeh-hchhHH----H
Q 023401 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG----VQVISA-KGQETI----N 146 (282)
Q Consensus 76 kILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rg----I~v~~~-k~~~~i----~ 146 (282)
||++|+==.|.=|. ..|+.|-+.|++|++...+.. -|++.-.+.+ .++..| +...++ .
T Consensus 7 kv~lITGASSGiG~-----A~A~~l~~~G~~vvl~aRR~d--------rL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~ 73 (246)
T COG4221 7 KVALITGASSGIGE-----ATARALAEAGAKVVLAARREE--------RLEALADEIGAGAALALALDVTDRAAVEAAIE 73 (246)
T ss_pred cEEEEecCcchHHH-----HHHHHHHHCCCeEEEEeccHH--------HHHHHHHhhccCceEEEeeccCCHHHHHHHHH
Confidence 47777654444454 678999999999988885533 2343333334 233222 333332 2
Q ss_pred ----HhhccCEEEEechhc
Q 023401 147 ----TALKADLIVLNTAVA 161 (282)
Q Consensus 147 ----~a~~~DLVIaNT~v~ 161 (282)
...++|.+|-|.-++
T Consensus 74 ~~~~~~g~iDiLvNNAGl~ 92 (246)
T COG4221 74 ALPEEFGRIDILVNNAGLA 92 (246)
T ss_pred HHHHhhCcccEEEecCCCC
Confidence 467799999998765
No 497
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=25.25 E-value=5.1e+02 Score=23.40 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=49.4
Q ss_pred HHHHHHHhCC---CeEEEEeccCCCCchhhhhhhHHHHHHcCCceeehh----chh----HHH--HhhccCEEEEechh-
Q 023401 95 ELAFLLRGVG---TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----GQE----TIN--TALKADLIVLNTAV- 160 (282)
Q Consensus 95 eLA~~Lkq~G---~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v~~~k----~~~----~i~--~a~~~DLVIaNT~v- 160 (282)
-++.++++.| ..+.++. ...++.......+++.+.+.|+++.... +.. .+. ...++|.||..+-.
T Consensus 129 ~~~~~~~~~~~~~~~v~~v~-~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~~~ 207 (345)
T cd06338 129 SLLEMLVALDPRPKKVAILY-ADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGHFP 207 (345)
T ss_pred HHHHHHHhcCCCCceEEEEe-cCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCcch
Confidence 4556666654 4555555 3444555666777888888899887431 111 122 24568999887654
Q ss_pred -chHHHHHHhhccCCCCCCceEEE
Q 023401 161 -AGKWLDAVLKEDVPRVLPNVLWW 183 (282)
Q Consensus 161 -~g~wl~~l~~~~~~~~~~pVIWW 183 (282)
...+++++.+..+ .+|+++.
T Consensus 208 ~~~~~~~~~~~~g~---~~~~~~~ 228 (345)
T cd06338 208 DAVLLVRQMKELGY---NPKALYM 228 (345)
T ss_pred hHHHHHHHHHHcCC---CCCEEEE
Confidence 4566777753333 3355543
No 498
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=25.24 E-value=2.4e+02 Score=25.64 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=46.7
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHc-CCceeehhchhHHH---H--hhccCEEEEechh
Q 023401 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAKGQETIN---T--ALKADLIVLNTAV 160 (282)
Q Consensus 87 TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~r-gI~v~~~k~~~~i~---~--a~~~DLVIaNT~v 160 (282)
.|-|+ ++|+.+.+.|++-..+..=++..+......+.+++.+. ++|+.-.-|.++++ . ...+|-|++||..
T Consensus 31 ~~dp~---~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~ 107 (241)
T PRK14024 31 YGSPL---DAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAA 107 (241)
T ss_pred CCCHH---HHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchH
Confidence 46676 68889999999865555222332333334556666554 78888776665544 2 2348999999997
Q ss_pred c
Q 023401 161 A 161 (282)
Q Consensus 161 ~ 161 (282)
.
T Consensus 108 l 108 (241)
T PRK14024 108 L 108 (241)
T ss_pred h
Confidence 4
No 499
>PRK08226 short chain dehydrogenase; Provisional
Probab=25.24 E-value=4.5e+02 Score=22.78 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=42.1
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEeccCCCCchhhhhhhHHHHHHcCCce--e--ehhchhHHH-
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--SAKGQETIN- 146 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~~G~~~~~v~~~L~~kll~rgI~v--~--~~k~~~~i~- 146 (282)
|++|++|++.- +| -+=..+++.|.+.|++|+++... .+ . ..+.+++.+.+.++ + +-...++++
T Consensus 4 ~~~~~~lItG~----s~--giG~~la~~l~~~G~~Vv~~~r~-~~-~----~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~ 71 (263)
T PRK08226 4 LTGKTALITGA----LQ--GIGEGIARVFARHGANLILLDIS-PE-I----EKLADELCGRGHRCTAVVADVRDPASVAA 71 (263)
T ss_pred CCCCEEEEeCC----CC--hHHHHHHHHHHHCCCEEEEecCC-HH-H----HHHHHHHHHhCCceEEEECCCCCHHHHHH
Confidence 56787776543 22 24557888888899997766532 21 1 12334444444332 1 112233332
Q ss_pred -------HhhccCEEEEechh
Q 023401 147 -------TALKADLIVLNTAV 160 (282)
Q Consensus 147 -------~a~~~DLVIaNT~v 160 (282)
.....|.||.|...
T Consensus 72 ~~~~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 72 AIKRAKEKEGRIDILVNNAGV 92 (263)
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 13468999988764
No 500
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=25.17 E-value=4.9e+02 Score=25.16 Aligned_cols=36 Identities=22% Similarity=0.079 Sum_probs=26.3
Q ss_pred ccccEEEEEeccCCCCCchHHHHHHHHHHHhCCCeEEEEecc
Q 023401 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (282)
Q Consensus 72 ~~~KkILLISHELs~TGAPLlLleLA~~Lkq~G~~V~vL~~~ 113 (282)
.++++||++. -||. +=.++++.|.+.|++|..+...
T Consensus 58 ~~~~kVLVtG----atG~--IG~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 58 PKDVTVLVVG----ATGY--IGKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred CCCCEEEEEC----CCcH--HHHHHHHHHHHCCCEEEEEEec
Confidence 6677887753 3333 5668889999999999888743
Done!