BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023403
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 4/169 (2%)
Query: 27 LEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY 86
+E + + I + C LQ+L L + +LSD + LA NL RLN+SGC+ FS+ AL
Sbjct: 105 IEVSTLHGILSQCSKLQNLSL-EGLRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQT 162
Query: 87 LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNL-GWCEDVGDVGVMNLAYGCP 145
L C +L LNL C + A+ + LNL G+ +++ + L CP
Sbjct: 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222
Query: 146 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQ 194
+L LDL V + +D +L+ L L C +I + L +
Sbjct: 223 NLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGE 270
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 4/169 (2%)
Query: 27 LEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY 86
+E + + I + C LQ+L L + +LSD + LA NL RLN+SGC+ FS+ AL
Sbjct: 67 IEVSTLHGILSQCSKLQNLSL-EGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQT 124
Query: 87 LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNL-GWCEDVGDVGVMNLAYGCP 145
L C +L LNL C + A+ + LNL G+ +++ + L CP
Sbjct: 125 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 184
Query: 146 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQ 194
+L LDL V + +D +L+ L L C +I + L +
Sbjct: 185 NLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGE 232
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 49/215 (22%)
Query: 26 QLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTS------- 78
++ +A+E + C +L+ L L+++ L L L P L L G T+
Sbjct: 197 EVSFSALERLVTRCPNLKSLKLNRAVPLE--KLATLLQRAPQLEELGTGGYTAEVRPDVY 254
Query: 79 ------------------FSDHALAYL---CGFCRKLKILNLCGCVKAATDYALQAIGRN 117
F D AYL C +L LNL Y L +
Sbjct: 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS--YATVQSYDLVKLLCQ 312
Query: 118 CNQLQSLNLGWCED-VGDVGVMNLAYGCPDLRSLDLCGC--------VCITDDSVIALAN 168
C +LQ L W D + D G+ LA C DLR L + V +T+ +++++
Sbjct: 313 CPKLQRL---WVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369
Query: 169 GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGI 203
GCP L S+ LY+CR +T+ A+ ++A +N+P +
Sbjct: 370 GCPKLESV-LYFCRQMTNAALITIA----RNRPNM 399
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 16/218 (7%)
Query: 32 VEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 91
+EA+++S L+++ L K ++D L +A N L +S C FS LA + C
Sbjct: 97 IEAMSSSYTWLEEIRL-KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC 155
Query: 92 RKLKILNLCGC-VKAATDYALQAIGRNCNQLQSLNLG-WCEDVGDVGVMNLAYGCPDLRS 149
R LK L+L V + + L L SLN+ +V + L CP+L+S
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215
Query: 150 LDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIY---SLAQSGVKN---KPGI 203
L L V + + + L P L LG +Y S+A SG K G
Sbjct: 216 LKLNRAVPL--EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGF 273
Query: 204 WESMKGRYDE-----EGLQSLNISQCTALTPPAVQALC 236
W+++ L +LN+S T + V+ LC
Sbjct: 274 WDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC 311
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 49/212 (23%)
Query: 10 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDL--SKSF------KLSDRSLYAL 61
PKL +L L +ED +E +A++C DL++L + S+ F L+++ L ++
Sbjct: 314 PKLQRLWVL------DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367
Query: 62 AHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDY------------ 109
+ GCP L + + C ++ AL + + LC A DY
Sbjct: 368 SMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426
Query: 110 --------------------ALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRS 149
+ IG +++ L++ + D D+G+ ++ GC LR
Sbjct: 427 IVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGD-SDLGMHHVLSGCDSLRK 485
Query: 150 LDLCGCVCITDDSVIALANGCPHLRSLGLYYC 181
L++ C D +++A A+ +RSL + C
Sbjct: 486 LEIRDCP-FGDKALLANASKLETMRSLWMSSC 516
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 71/159 (44%), Gaps = 14/159 (8%)
Query: 30 NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAH---GCPNLTRLNISGCTS-FSDHALA 85
+ + AIA +C +L++LDL +S + D S + L+H +L LNIS S S AL
Sbjct: 146 DGLAAIAATCRNLKELDLRES-DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204
Query: 86 YLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLG--WCEDVGDV--GVMNLA 141
L C LK L L +A L + + QL+ L G E DV G+
Sbjct: 205 RLVTRCPNLKSLKLN---RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261
Query: 142 YGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYY 180
GC +LR L G + A+ + C L +L L Y
Sbjct: 262 SGCKELRCLS--GFWDAVPAYLPAVYSVCSRLTTLNLSY 298
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 45/209 (21%)
Query: 29 DNAVEAIANSCHDLQDLDLSKSFK----------LSDRSLYALAHGCPNLTRL--NISGC 76
D +E +A C L+ L + + +S R L ALA GC L + +S
Sbjct: 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390
Query: 77 TSFSDHALA-YLCGFC--------RKLKILNL----------CGCVK-----------AA 106
T+ S ++ YL C R+ +I +L GC K
Sbjct: 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450
Query: 107 TDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL 166
TD L IG+ ++ + LG+ + D G+M + GCP+L+ L++ GC C ++ ++ A
Sbjct: 451 TDLGLSYIGQYSPNVRWMLLGYVGE-SDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAA 508
Query: 167 ANGCPHLRSLGLY-YCRNITDRAIYSLAQ 194
P LR L + Y ++T + + +A+
Sbjct: 509 VTKLPSLRYLWVQGYRASMTGQDLMQMAR 537
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 31/140 (22%)
Query: 32 VEAIANSCHDLQDLDLSKSFKLSDRSLYALAHG-CPNLTRLNISGCTSFSDHALAYLCGF 90
V I+N+ L+ + + +SD L LA +L L + C+ F+ L +
Sbjct: 104 VTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTH 162
Query: 91 CRKLKIL-----------------------NLCGCVKAATDYA------LQAIGRNCNQL 121
CRK+K L +L T++A L+ I RNC L
Sbjct: 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222
Query: 122 QSLNLGWCEDVGDVGVMNLA 141
S+ +G E + VG A
Sbjct: 223 VSVKVGDFEILELVGFFKAA 242
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 26 QLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALA---HGCPNLTRLNISGCTSFSDH 82
+LE + ++ S +LQ+L KS K+ + L AL H P L L++ GCT+ ++
Sbjct: 189 RLEWTGIRSLPASIANLQNL---KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245
Query: 83 ALAYLCGFCRKLKILNLCGC 102
+ G LK L L C
Sbjct: 246 PPIF--GGRAPLKRLILKDC 263
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 58 LYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC-VKAATDY 109
L LA CPNLT LN+SG D + LK L+L C V DY
Sbjct: 80 LEVLAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,765,044
Number of Sequences: 62578
Number of extensions: 286148
Number of successful extensions: 666
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 19
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)