Query 023403
Match_columns 282
No_of_seqs 132 out of 2131
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:46:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.9 3.6E-22 7.9E-27 164.3 6.3 250 3-275 180-455 (483)
2 KOG4341 F-box protein containi 99.8 7E-22 1.5E-26 162.6 5.0 245 13-262 138-417 (483)
3 KOG2120 SCF ubiquitin ligase, 99.7 6E-17 1.3E-21 128.6 7.7 204 13-243 185-390 (419)
4 KOG2120 SCF ubiquitin ligase, 99.6 1.1E-15 2.3E-20 121.6 9.2 202 41-271 186-388 (419)
5 cd00116 LRR_RI Leucine-rich re 99.6 8.5E-14 1.8E-18 117.5 21.4 226 5-257 43-289 (319)
6 cd00116 LRR_RI Leucine-rich re 99.6 1.4E-13 3.1E-18 116.2 20.4 230 4-260 14-263 (319)
7 KOG1947 Leucine rich repeat pr 99.5 5.9E-14 1.3E-18 125.1 12.1 164 15-179 163-329 (482)
8 KOG1947 Leucine rich repeat pr 99.5 8.2E-14 1.8E-18 124.2 12.8 254 4-269 179-450 (482)
9 KOG1909 Ran GTPase-activating 99.4 4.3E-12 9.4E-17 103.2 11.3 197 38-258 90-310 (382)
10 KOG1909 Ran GTPase-activating 99.4 2.5E-11 5.4E-16 98.8 14.9 229 4-257 21-281 (382)
11 KOG3207 Beta-tubulin folding c 99.4 9.6E-14 2.1E-18 115.7 0.9 220 10-257 118-337 (505)
12 PLN00113 leucine-rich repeat r 99.3 1.7E-12 3.7E-17 125.2 7.8 227 7-258 87-320 (968)
13 PLN00113 leucine-rich repeat r 99.3 8.8E-12 1.9E-16 120.3 7.3 157 11-181 138-294 (968)
14 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.4E-16 102.7 1.0 194 38-257 119-312 (505)
15 PLN03210 Resistant to P. syrin 99.1 3.2E-10 6.8E-15 110.7 8.0 45 211-263 866-910 (1153)
16 KOG3665 ZYG-1-like serine/thre 99.0 7.7E-10 1.7E-14 101.3 8.6 208 41-278 61-281 (699)
17 KOG3665 ZYG-1-like serine/thre 98.9 9.8E-09 2.1E-13 94.1 11.3 203 14-242 61-277 (699)
18 KOG4194 Membrane glycoprotein 98.9 1.4E-10 3E-15 100.6 -2.7 35 91-128 292-326 (873)
19 PLN03210 Resistant to P. syrin 98.8 8.7E-09 1.9E-13 100.8 8.8 42 211-261 799-840 (1153)
20 KOG4194 Membrane glycoprotein 98.6 1E-08 2.2E-13 89.3 0.5 59 119-181 173-231 (873)
21 COG5238 RNA1 Ran GTPase-activa 98.6 4.9E-06 1.1E-10 66.4 14.8 222 10-255 27-281 (388)
22 KOG0444 Cytoskeletal regulator 98.4 1.6E-08 3.4E-13 89.0 -3.3 35 144-181 221-255 (1255)
23 KOG2982 Uncharacterized conser 98.3 4E-07 8.6E-12 73.4 3.6 146 30-182 61-210 (418)
24 KOG2982 Uncharacterized conser 98.3 2.6E-07 5.7E-12 74.4 1.8 145 5-155 63-209 (418)
25 KOG0444 Cytoskeletal regulator 98.3 1.3E-08 2.8E-13 89.6 -7.0 226 8-261 145-377 (1255)
26 KOG3864 Uncharacterized conser 98.2 1.9E-06 4.2E-11 65.6 4.9 88 121-228 103-190 (221)
27 KOG0618 Serine/threonine phosp 98.2 2E-07 4.4E-12 85.3 -0.4 125 120-258 360-488 (1081)
28 COG5238 RNA1 Ran GTPase-activa 98.2 4.1E-05 8.8E-10 61.3 11.8 205 30-257 21-253 (388)
29 KOG0618 Serine/threonine phosp 98.1 2.9E-07 6.3E-12 84.3 -1.3 130 66-226 359-488 (1081)
30 PF14580 LRR_9: Leucine-rich r 98.1 9.7E-07 2.1E-11 67.2 0.7 129 40-181 19-150 (175)
31 KOG3864 Uncharacterized conser 98.1 4E-06 8.7E-11 63.9 3.8 89 93-185 102-190 (221)
32 PF14580 LRR_9: Leucine-rich r 97.9 1.9E-06 4.1E-11 65.6 -0.1 130 12-155 18-150 (175)
33 PRK15387 E3 ubiquitin-protein 97.8 8.5E-06 1.8E-10 75.7 2.5 19 242-261 441-459 (788)
34 KOG4658 Apoptotic ATPase [Sign 97.8 1E-05 2.2E-10 76.6 2.3 111 8-127 566-676 (889)
35 KOG1259 Nischarin, modulator o 97.8 2.9E-06 6.4E-11 68.6 -1.1 206 8-257 177-410 (490)
36 KOG0472 Leucine-rich repeat pr 97.6 9.6E-05 2.1E-09 62.4 5.4 104 143-259 433-541 (565)
37 KOG4237 Extracellular matrix p 97.6 1.2E-05 2.6E-10 67.4 -1.0 15 167-181 270-284 (498)
38 KOG1859 Leucine-rich repeat pr 97.3 2.9E-05 6.4E-10 70.0 -2.0 43 35-78 79-121 (1096)
39 PRK15387 E3 ubiquitin-protein 97.2 0.00026 5.6E-09 66.1 3.1 81 145-235 382-465 (788)
40 smart00367 LRR_CC Leucine-rich 97.1 0.00057 1.2E-08 34.3 2.8 23 214-236 2-24 (26)
41 KOG4658 Apoptotic ATPase [Sign 96.8 0.0017 3.7E-08 61.9 4.7 214 39-261 544-785 (889)
42 PLN03150 hypothetical protein; 96.7 0.0027 5.9E-08 58.7 5.5 110 41-158 419-528 (623)
43 KOG1259 Nischarin, modulator o 96.7 0.0011 2.4E-08 54.1 2.3 176 11-225 212-410 (490)
44 smart00367 LRR_CC Leucine-rich 96.6 0.003 6.5E-08 31.6 3.0 24 170-193 1-24 (26)
45 PF13855 LRR_8: Leucine rich r 96.6 0.00014 3E-09 45.2 -2.7 15 243-257 46-60 (61)
46 PRK15370 E3 ubiquitin-protein 96.6 0.0032 6.8E-08 59.1 4.8 10 214-223 346-355 (754)
47 PRK15386 type III secretion pr 96.5 0.0037 8.1E-08 53.9 4.7 119 39-184 51-169 (426)
48 KOG0617 Ras suppressor protein 96.5 1.5E-05 3.3E-10 59.4 -8.4 131 41-185 34-164 (264)
49 PLN03150 hypothetical protein; 96.5 0.0043 9.3E-08 57.4 5.0 108 67-182 419-526 (623)
50 KOG1859 Leucine-rich repeat pr 96.3 0.0011 2.3E-08 60.4 0.3 21 39-59 108-128 (1096)
51 KOG4237 Extracellular matrix p 96.3 0.00052 1.1E-08 57.9 -1.6 114 6-128 59-173 (498)
52 PF13855 LRR_8: Leucine rich r 96.3 0.00021 4.5E-09 44.4 -3.3 58 13-75 1-58 (61)
53 KOG0617 Ras suppressor protein 96.2 2.4E-05 5.2E-10 58.4 -8.8 153 11-181 31-183 (264)
54 KOG4308 LRR-containing protein 96.1 0.0036 7.8E-08 55.6 2.6 201 15-237 89-312 (478)
55 PF12799 LRR_4: Leucine Rich r 96.0 0.0062 1.4E-07 34.9 2.3 39 214-262 1-39 (44)
56 KOG2739 Leucine-rich acidic nu 95.9 0.0043 9.4E-08 49.5 1.7 37 65-101 64-100 (260)
57 KOG4308 LRR-containing protein 95.9 0.0075 1.6E-07 53.6 3.4 181 5-194 107-312 (478)
58 KOG2123 Uncharacterized conser 95.7 0.0042 9.2E-08 50.3 1.0 115 12-139 18-134 (388)
59 PRK15370 E3 ubiquitin-protein 95.7 0.036 7.7E-07 52.3 7.2 142 13-182 220-378 (754)
60 KOG2123 Uncharacterized conser 95.4 0.0034 7.4E-08 50.8 -0.4 38 143-181 61-98 (388)
61 KOG1644 U2-associated snRNP A' 95.0 0.015 3.3E-07 44.8 2.0 80 40-128 42-122 (233)
62 PF13516 LRR_6: Leucine Rich r 94.6 0.026 5.5E-07 27.5 1.6 22 214-236 2-23 (24)
63 KOG2739 Leucine-rich acidic nu 94.5 0.012 2.6E-07 47.1 0.3 87 91-180 64-152 (260)
64 KOG1644 U2-associated snRNP A' 94.4 0.014 3E-07 45.1 0.4 62 117-181 62-123 (233)
65 PF12799 LRR_4: Leucine Rich r 94.2 0.059 1.3E-06 30.8 2.7 33 146-181 2-34 (44)
66 COG4886 Leucine-rich repeat (L 93.9 0.057 1.2E-06 47.1 3.3 38 210-257 251-288 (394)
67 KOG0472 Leucine-rich repeat pr 93.6 0.028 6.1E-07 48.0 0.9 114 33-159 428-541 (565)
68 PRK15386 type III secretion pr 93.4 0.13 2.8E-06 44.7 4.5 73 89-180 49-121 (426)
69 smart00368 LRR_RI Leucine rich 92.9 0.18 3.8E-06 25.6 3.0 25 214-239 2-26 (28)
70 PF13504 LRR_7: Leucine rich r 92.8 0.084 1.8E-06 23.3 1.4 15 246-261 1-15 (17)
71 COG4886 Leucine-rich repeat (L 89.5 0.21 4.6E-06 43.5 1.9 36 142-181 252-287 (394)
72 KOG3763 mRNA export factor TAP 88.6 1.1 2.3E-05 40.2 5.5 92 31-126 209-308 (585)
73 KOG3763 mRNA export factor TAP 85.4 2.5 5.3E-05 38.0 5.9 88 138-242 211-303 (585)
74 PF00560 LRR_1: Leucine Rich R 85.0 0.53 1.2E-05 22.2 1.0 15 247-262 1-15 (22)
75 KOG4579 Leucine-rich repeat (L 83.2 0.54 1.2E-05 34.3 0.9 84 93-182 28-111 (177)
76 KOG0531 Protein phosphatase 1, 80.7 0.5 1.1E-05 41.6 -0.1 11 65-75 117-127 (414)
77 KOG4579 Leucine-rich repeat (L 80.1 0.9 1.9E-05 33.2 1.1 84 120-226 28-112 (177)
78 KOG0531 Protein phosphatase 1, 76.6 1.4 2.9E-05 38.9 1.4 104 117-257 93-197 (414)
79 PF07723 LRR_2: Leucine Rich R 69.2 4.8 0.0001 19.9 1.8 8 147-154 2-9 (26)
80 smart00370 LRR Leucine-rich re 42.7 22 0.00047 17.1 1.6 10 214-223 2-11 (26)
81 smart00369 LRR_TYP Leucine-ric 42.7 22 0.00047 17.1 1.6 10 214-223 2-11 (26)
82 KOG3735 Tropomodulin and leiom 38.8 1E+02 0.0022 26.3 5.7 25 214-239 255-279 (353)
83 smart00365 LRR_SD22 Leucine-ri 30.6 45 0.00098 16.4 1.6 13 214-227 2-14 (26)
84 KOG0532 Leucine-rich repeat (L 28.3 6.1 0.00013 36.0 -3.0 32 121-155 213-244 (722)
85 smart00446 LRRcap occurring C- 26.2 31 0.00067 17.1 0.5 15 7-21 7-21 (26)
86 KOG3735 Tropomodulin and leiom 22.9 2.9E+02 0.0062 23.8 5.8 97 54-153 186-291 (353)
87 PF01827 FTH: FTH domain; Int 22.6 2.9E+02 0.0063 19.6 8.0 45 144-194 67-111 (142)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.86 E-value=3.6e-22 Score=164.30 Aligned_cols=250 Identities=31% Similarity=0.537 Sum_probs=181.9
Q ss_pred hhHHHHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHH
Q 023403 3 NLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDH 82 (282)
Q Consensus 3 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 82 (282)
..+..+.++|++|+.|++.+| ..+++..+..+...|++|++|++++|+.++..++..+...++.++.+...||......
T Consensus 180 ~s~~sla~~C~~l~~l~L~~c-~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le 258 (483)
T KOG4341|consen 180 SSLLSLARYCRKLRHLNLHSC-SSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE 258 (483)
T ss_pred HHHHHHHHhcchhhhhhhccc-chhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH
Confidence 345567778899999999873 5778888888888899999999999888888777776666666666655555554444
Q ss_pred HHHH--------------------------HHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHH
Q 023403 83 ALAY--------------------------LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVG 136 (282)
Q Consensus 83 ~~~~--------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 136 (282)
.+.. +...+..|+.++.++|.. +++..+..+.+++++|+.|.+..|..+++.+
T Consensus 259 ~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~-~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 259 ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD-ITDEVLWALGQHCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC-CchHHHHHHhcCCCceEEEeccccchhhhhh
Confidence 4443 334455666666666654 6666666666667777777777777777777
Q ss_pred HHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCc
Q 023403 137 VMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGL 216 (282)
Q Consensus 137 ~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L 216 (282)
+..+..+++.|+.+++.+|..+.+..+..+..+|+.|+.|.+++|..+++.++..+.... .....|
T Consensus 338 ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~--------------c~~~~l 403 (483)
T KOG4341|consen 338 FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS--------------CSLEGL 403 (483)
T ss_pred hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc--------------cccccc
Confidence 777777777777777777666666666667667777777777777777777666655532 223678
Q ss_pred ceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccchhhccCCCCcCCcC
Q 023403 217 QSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTAS 275 (282)
Q Consensus 217 ~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~ 275 (282)
+.+.+++|+.+++..++.+. .|++|+.+++.+|..++...+..+-+..|.+.
T Consensus 404 ~~lEL~n~p~i~d~~Le~l~-------~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 404 EVLELDNCPLITDATLEHLS-------ICRNLERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred ceeeecCCCCchHHHHHHHh-------hCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence 88888898888887777654 78899999999999999999988888877653
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.85 E-value=7e-22 Score=162.63 Aligned_cols=245 Identities=30% Similarity=0.490 Sum_probs=143.0
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 92 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 92 (282)
..|+.|.+.|+ ..+.+..+..+..+||++++|.+++|..+++..+.++.+.|++|++|++..|..+++..+..+...|+
T Consensus 138 g~lk~LSlrG~-r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGC-RAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccc-ccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 35677777764 45666777777777777777777777777777777777777777777777777777777776777777
Q ss_pred CCeEEEecCCcccccHHHHHHHHHhCCCC--------------------------CEEEecCCCCCCHHHHHHHHhcCCC
Q 023403 93 KLKILNLCGCVKAATDYALQAIGRNCNQL--------------------------QSLNLGWCEDVGDVGVMNLAYGCPD 146 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~L--------------------------~~L~l~~~~~~~~~~~~~l~~~~~~ 146 (282)
+|++|++++|.. +++.++..+.+++..+ .++++..|+.++|..+..+...+..
T Consensus 217 kL~~lNlSwc~q-i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 217 KLKYLNLSWCPQ-ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred hHHHhhhccCch-hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 777777777753 4544444444444444 4444445555555555555555555
Q ss_pred CcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhccc---------ccCcccCcc
Q 023403 147 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMK---------GRYDEEGLQ 217 (282)
Q Consensus 147 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~L~ 217 (282)
|+.++.++|..+++..+.++.+++++|+.|.++.|..+++.++..++..+..+......... ....++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 66666666666666666666666666666666666666666666655554332222111100 022444555
Q ss_pred eEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccch
Q 023403 218 SLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV 262 (282)
Q Consensus 218 ~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~~ 262 (282)
.|.++.|..++|+++..+...--. ...|..+++++|+.+++.
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~---~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCS---LEGLEVLELDNCPLITDA 417 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhcccc---ccccceeeecCCCCchHH
Confidence 555555555555544444322111 123455555555555443
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6e-17 Score=128.59 Aligned_cols=204 Identities=26% Similarity=0.429 Sum_probs=166.7
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 92 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 92 (282)
..++.+||++. .++...+..+...|.+|+-|.+.+. .+.+.....+++ =.+|+.|+++.|.+++...+..+...|.
T Consensus 185 sRlq~lDLS~s--~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 185 SRLQHLDLSNS--VITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhhHHhhcchh--heeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhh
Confidence 36899999964 7788889999999999999999985 677776666765 4899999999999999999998999999
Q ss_pred CCeEEEecCCcccccHHHHHHHHH-hCCCCCEEEecCCCC-CCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcC
Q 023403 93 KLKILNLCGCVKAATDYALQAIGR-NCNQLQSLNLGWCED-VGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 170 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 170 (282)
.|..|++++|. ...+....+.. -.++|+.|+++++.. +.+..+..+...||+|.+||+++|..++++.+..+.+ +
T Consensus 261 ~L~~LNlsWc~--l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f 337 (419)
T KOG2120|consen 261 RLDELNLSWCF--LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-F 337 (419)
T ss_pred hHhhcCchHhh--ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-c
Confidence 99999999987 34343444333 347899999988743 3455788888899999999999999999988888876 8
Q ss_pred CCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCc
Q 023403 171 PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALH 243 (282)
Q Consensus 171 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~ 243 (282)
+.|++|.++.|-.+....+..+... |+|.+||+.+| ++|..++-+.+.+|+++
T Consensus 338 ~~L~~lSlsRCY~i~p~~~~~l~s~------------------psl~yLdv~g~--vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDIIPETLLELNSK------------------PSLVYLDVFGC--VSDTTMELLKEMLSHLK 390 (419)
T ss_pred chheeeehhhhcCCChHHeeeeccC------------------cceEEEEeccc--cCchHHHHHHHhCcccc
Confidence 9999999999988877666666544 99999999885 78888888888777753
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-15 Score=121.59 Aligned_cols=202 Identities=26% Similarity=0.391 Sum_probs=153.2
Q ss_pred CccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCC
Q 023403 41 DLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQ 120 (282)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 120 (282)
.||+|+|+. ..++...+..+++.|.+|+.|.+.+ ..+++.....+.+ -.+|+.|+++.|. .++..++..+...|..
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAk-N~~L~~lnlsm~s-G~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAK-NSNLVRLNLSMCS-GFTENALQLLLSSCSR 261 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhc-cccceeecccccc-ccchhHHHHHHHhhhh
Confidence 488888887 4778788888888889999998887 5777777666665 5789999998885 4888888888888999
Q ss_pred CCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCC-ccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCC
Q 023403 121 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV-CITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKN 199 (282)
Q Consensus 121 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 199 (282)
|.+|++++|....+.-...+.+.-+.|..|+++|+. ++-+.-+.-+..+||+|..|+++.|..+++..+..+.+-
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf---- 337 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF---- 337 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc----
Confidence 999999998766665333333345788889999874 344555667777899999999999988888777777765
Q ss_pred CCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccchhhccCCCCc
Q 023403 200 KPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSH 271 (282)
Q Consensus 200 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 271 (282)
+-|++|.++.|-.+..+.+-. +...|.|.+|++.||-.-+...+.+...++
T Consensus 338 --------------~~L~~lSlsRCY~i~p~~~~~-------l~s~psl~yLdv~g~vsdt~mel~~e~~~~ 388 (419)
T KOG2120|consen 338 --------------NYLQHLSLSRCYDIIPETLLE-------LNSKPSLVYLDVFGCVSDTTMELLKEMLSH 388 (419)
T ss_pred --------------chheeeehhhhcCCChHHeee-------eccCcceEEEEeccccCchHHHHHHHhCcc
Confidence 889999999988886654433 345688999999999777665555444444
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.64 E-value=8.5e-14 Score=117.54 Aligned_cols=226 Identities=24% Similarity=0.237 Sum_probs=154.4
Q ss_pred HHHHccCCCCccEEEccCCCCCCc--HHHH---HHHHhhCCCccEEEcCCCCCCChH---HHHHHHHcCCCCcEEeccCC
Q 023403 5 VLSLAPKLTKLQTLVLRQDKPQLE--DNAV---EAIANSCHDLQDLDLSKSFKLSDR---SLYALAHGCPNLTRLNISGC 76 (282)
Q Consensus 5 ~~~~~~~~~~L~~L~l~~~~~~~~--~~~~---~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~ 76 (282)
+...+...++++.++++++ .+. ...+ ......+++|++|++++|. +... .+..+... ++|++|++++|
T Consensus 43 i~~~l~~~~~l~~l~l~~~--~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~~-~~L~~L~ls~~ 118 (319)
T cd00116 43 LASALRPQPSLKELCLSLN--ETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-LGPDGCGVLESLLRS-SSLQELKLNNN 118 (319)
T ss_pred HHHHHhhCCCceEEecccc--ccCCcchHHHHHHHHHHhcCceeEEEccCCC-CChhHHHHHHHHhcc-CcccEEEeeCC
Confidence 5666778889999999875 333 2222 2333447799999999974 4322 23333333 56999999986
Q ss_pred CCCCHHHHHHH---HHcC-CCCeEEEecCCcccccHHHHHH---HHHhCCCCCEEEecCCCCCCHHHHHHHH---hcCCC
Q 023403 77 TSFSDHALAYL---CGFC-RKLKILNLCGCVKAATDYALQA---IGRNCNQLQSLNLGWCEDVGDVGVMNLA---YGCPD 146 (282)
Q Consensus 77 ~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~~~~~---l~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~ 146 (282)
.+.+.....+ ...+ ++|+.|++++|. ++...... ....+++|++|++.+| .+++..+..+. ...+.
T Consensus 119 -~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~ 194 (319)
T cd00116 119 -GLGDRGLRLLAKGLKDLPPALEKLVLGRNR--LEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCN 194 (319)
T ss_pred -ccchHHHHHHHHHHHhCCCCceEEEcCCCc--CCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCC
Confidence 4554433332 2345 899999999975 66443333 3345678999999985 57766555443 34469
Q ss_pred CcEEEecCCCccCHHHHHHH---HhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccC
Q 023403 147 LRSLDLCGCVCITDDSVIAL---ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQ 223 (282)
Q Consensus 147 L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (282)
|+.|++++| .+++.....+ ...+++|++|++++| .+++.++..+...... ..++|++|++.+
T Consensus 195 L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~-------------~~~~L~~L~l~~ 259 (319)
T cd00116 195 LEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLS-------------PNISLLTLSLSC 259 (319)
T ss_pred CCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhc-------------cCCCceEEEccC
Confidence 999999996 6776655443 345688999999997 5777666666553210 127899999999
Q ss_pred CCCCCHHHHHHHHhhCCCCccCCCcceeeecCCC
Q 023403 224 CTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 224 ~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~ 257 (282)
| .+++.+...+.+.++.+ ++|+.++++++.
T Consensus 260 n-~i~~~~~~~l~~~~~~~---~~L~~l~l~~N~ 289 (319)
T cd00116 260 N-DITDDGAKDLAEVLAEK---ESLLELDLRGNK 289 (319)
T ss_pred C-CCCcHHHHHHHHHHhcC---CCccEEECCCCC
Confidence 4 78877778777766654 788999999987
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=1.4e-13 Score=116.20 Aligned_cols=230 Identities=24% Similarity=0.224 Sum_probs=156.9
Q ss_pred hHHHHccCCCCccEEEccCCCCCCcHHH---HHHHHhhCCCccEEEcCCCCCCC--hHHHH---HHHHcCCCCcEEeccC
Q 023403 4 LVLSLAPKLTKLQTLVLRQDKPQLEDNA---VEAIANSCHDLQDLDLSKSFKLS--DRSLY---ALAHGCPNLTRLNISG 75 (282)
Q Consensus 4 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~--~~~~~---~~~~~~~~L~~L~l~~ 75 (282)
.+..++..+++|+.|++.++ .+++.. +.......+.+++++++++. +. ...+. ..+..+++|++|++++
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~--~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 90 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGN--TLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSD 90 (319)
T ss_pred chHHHHHHHhhccEEeecCC--CCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccC
Confidence 34556667778999999986 554443 34344556789999999863 44 23322 3334578999999998
Q ss_pred CCCC--CHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHH---HhC-CCCCEEEecCCCCCCHHH---HHHHHhcCCC
Q 023403 76 CTSF--SDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIG---RNC-NQLQSLNLGWCEDVGDVG---VMNLAYGCPD 146 (282)
Q Consensus 76 ~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~---~~~-~~L~~L~l~~~~~~~~~~---~~~l~~~~~~ 146 (282)
+... ....+..+... ++|+.|++++|. +++.....+. ..+ ++|++|++.+|. +++.. +......++.
T Consensus 91 ~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~--~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~ 166 (319)
T cd00116 91 NALGPDGCGVLESLLRS-SSLQELKLNNNG--LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRD 166 (319)
T ss_pred CCCChhHHHHHHHHhcc-CcccEEEeeCCc--cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCC
Confidence 6432 12223333333 569999999965 6655554433 234 789999999964 66433 3333445678
Q ss_pred CcEEEecCCCccCHHHHHHHHh---cCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccC
Q 023403 147 LRSLDLCGCVCITDDSVIALAN---GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQ 223 (282)
Q Consensus 147 L~~L~l~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (282)
|++|++++| .+++..+..+.. ..++|+.|++++| .+++.....+... ...+++|++|++++
T Consensus 167 L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~--------------~~~~~~L~~L~ls~ 230 (319)
T cd00116 167 LKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAET--------------LASLKSLEVLNLGD 230 (319)
T ss_pred cCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHH--------------hcccCCCCEEecCC
Confidence 999999995 788766655543 3469999999997 5776666555443 23348999999999
Q ss_pred CCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCcc
Q 023403 224 CTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLT 260 (282)
Q Consensus 224 ~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~ 260 (282)
| .+++..+..+...++. ..+.|++|++++|. ++
T Consensus 231 n-~l~~~~~~~l~~~~~~--~~~~L~~L~l~~n~-i~ 263 (319)
T cd00116 231 N-NLTDAGAAALASALLS--PNISLLTLSLSCND-IT 263 (319)
T ss_pred C-cCchHHHHHHHHHHhc--cCCCceEEEccCCC-CC
Confidence 4 6888888888776553 35688999999995 54
No 7
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.54 E-value=5.9e-14 Score=125.06 Aligned_cols=164 Identities=42% Similarity=0.693 Sum_probs=89.6
Q ss_pred ccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCC-CCC--CHHHHHHHHHcC
Q 023403 15 LQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC-TSF--SDHALAYLCGFC 91 (282)
Q Consensus 15 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~--~~~~~~~~~~~~ 91 (282)
++.+................+...++.|++|.+.+|..+++.....+...+++|+.|+++++ ... .......+...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 242 (482)
T KOG1947|consen 163 LESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSIC 242 (482)
T ss_pred HheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhc
Confidence 33333333322333444444444556666666666655555555555555666666666541 111 111222244445
Q ss_pred CCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCC
Q 023403 92 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP 171 (282)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 171 (282)
++|+.+++.+|.. +++.++..+...|++|++|.+..|..+++.++..+...++.|++|++++|..+++.++..+...|+
T Consensus 243 ~~L~~l~l~~~~~-isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 243 RKLKSLDLSGCGL-VTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred CCcCccchhhhhc-cCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 6666666666543 566666666655666666666666556666666666666666666666666666665655555566
Q ss_pred CCCEEeec
Q 023403 172 HLRSLGLY 179 (282)
Q Consensus 172 ~L~~L~l~ 179 (282)
+++.|.+.
T Consensus 322 ~l~~l~~~ 329 (482)
T KOG1947|consen 322 NLRELKLL 329 (482)
T ss_pred chhhhhhh
Confidence 55554433
No 8
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.54 E-value=8.2e-14 Score=124.15 Aligned_cols=254 Identities=30% Similarity=0.505 Sum_probs=183.4
Q ss_pred hHHHHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCC-CCCCC--hHHHHHHHHcCCCCcEEeccCCCCCC
Q 023403 4 LVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSK-SFKLS--DRSLYALAHGCPNLTRLNISGCTSFS 80 (282)
Q Consensus 4 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~ 80 (282)
....+...++.|+.+.+.++ ..+.+..+..+...+++|++|++++ +.... ......+...|++|+.|+++++..++
T Consensus 179 ~~~~l~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 179 ILLRLLSSCPLLKRLSLSGC-SKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred HHHHHHhhCchhhHhhhccc-ccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 34556667899999999975 4566666777888899999999987 22222 22344466778999999999987788
Q ss_pred HHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCC---c
Q 023403 81 DHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV---C 157 (282)
Q Consensus 81 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~---~ 157 (282)
+..+..+...|++|+.|.+.+|.. ++++++..+.+.++.|++|++.+|..+++.++..+...+++++++.+..+. .
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~-lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~ 336 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSN-LTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPS 336 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCc-cchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCcc
Confidence 999998888899999999998875 899999999999999999999999999888888888788888777665543 3
Q ss_pred cCHHHHHHH------------HhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCC
Q 023403 158 ITDDSVIAL------------ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT 225 (282)
Q Consensus 158 l~~~~l~~l------------~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 225 (282)
+++..+..+ .+.+++++.+.+..+. .++.+......++.... ..+.... ....+++.|++..|.
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~--~~~~~l~~L~l~~~~ 412 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRL--CRSDSLRVLNLSDCR 412 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHh--ccCCccceEecccCc
Confidence 544444333 3355566666666554 44444434434433332 2221111 112338999999999
Q ss_pred CCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccchhhccCCC
Q 023403 226 ALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQ 269 (282)
Q Consensus 226 ~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~~~~ 269 (282)
..++..+...... |.+++.+++.+|+.++...+..+..
T Consensus 413 ~~t~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~ 450 (482)
T KOG1947|consen 413 LVTDKGLRCLADS------CSNLKDLDLSGCRVITLKSLEGFAS 450 (482)
T ss_pred cccccchHHHhhh------hhccccCCccCcccccchhhhhhhc
Confidence 9999888887643 6778899999999988877654433
No 9
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.39 E-value=4.3e-12 Score=103.16 Aligned_cols=197 Identities=24% Similarity=0.343 Sum_probs=114.1
Q ss_pred hCCCccEEEcCCCCCCChH---HHHHHHHcCCCCcEEeccCCCCCCHHHHHHHH------------HcCCCCeEEEecCC
Q 023403 38 SCHDLQDLDLSKSFKLSDR---SLYALAHGCPNLTRLNISGCTSFSDHALAYLC------------GFCRKLKILNLCGC 102 (282)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~ 102 (282)
.||+|++|+||+| -+... .+..+.+.|..|++|.+.+| ++++..-..+. ..-+.|+.+..++
T Consensus 90 ~~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r- 166 (382)
T KOG1909|consen 90 GCPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR- 166 (382)
T ss_pred cCCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-
Confidence 3567777777765 33332 34445556677777777664 55443332221 2234677777666
Q ss_pred cccccHHH---HHHHHHhCCCCCEEEecCCCCCCHHHHH---HHHhcCCCCcEEEecCCCccCHHHHHHHH---hcCCCC
Q 023403 103 VKAATDYA---LQAIGRNCNQLQSLNLGWCEDVGDVGVM---NLAYGCPDLRSLDLCGCVCITDDSVIALA---NGCPHL 173 (282)
Q Consensus 103 ~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~---~l~~~~~~L~~L~l~~~~~l~~~~l~~l~---~~~~~L 173 (282)
+.+.+.+ +...++.++.|+.+.+.. +.+...++. .-+..||.|+.|++.++ .++..+-..+. ..+++|
T Consensus 167 -Nrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 167 -NRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred -cccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchh
Confidence 3344433 333445567777777776 345443332 22346778888888873 55544433333 345677
Q ss_pred CEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeee
Q 023403 174 RSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVM 253 (282)
Q Consensus 174 ~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l 253 (282)
+.+++++| .++..+...+...- ....|+|+.|.+.+ +.++..+...+..+... .|.|+.|++
T Consensus 244 ~El~l~dc-ll~~~Ga~a~~~al-------------~~~~p~L~vl~l~g-NeIt~da~~~la~~~~e---k~dL~kLnL 305 (382)
T KOG1909|consen 244 RELNLGDC-LLENEGAIAFVDAL-------------KESAPSLEVLELAG-NEITRDAALALAACMAE---KPDLEKLNL 305 (382)
T ss_pred eeeccccc-ccccccHHHHHHHH-------------hccCCCCceeccCc-chhHHHHHHHHHHHHhc---chhhHHhcC
Confidence 88888887 35544443333221 11137888888888 67776666666555443 477899999
Q ss_pred cCCCC
Q 023403 254 SGCLN 258 (282)
Q Consensus 254 ~~c~~ 258 (282)
+||..
T Consensus 306 ngN~l 310 (382)
T KOG1909|consen 306 NGNRL 310 (382)
T ss_pred Ccccc
Confidence 99875
No 10
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.38 E-value=2.5e-11 Score=98.83 Aligned_cols=229 Identities=25% Similarity=0.346 Sum_probs=157.8
Q ss_pred hHHHHccCCCCccEEEccCCCCCCcHH---HHHHHHhhCCCccEEEcCCCC--CCChHH------HHHHHHcCCCCcEEe
Q 023403 4 LVLSLAPKLTKLQTLVLRQDKPQLEDN---AVEAIANSCHDLQDLDLSKSF--KLSDRS------LYALAHGCPNLTRLN 72 (282)
Q Consensus 4 ~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~--~~~~~~------~~~~~~~~~~L~~L~ 72 (282)
.+......+..++.|+++++ .++.. ++.......++|++.++++-- ...+.. +...+..||+|++++
T Consensus 21 ~v~~~~~~~~s~~~l~lsgn--t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGN--TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred hHHHHhcccCceEEEeccCC--chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 45566678889999999997 55543 445555567789999998621 112222 222345689999999
Q ss_pred ccCCCCCCH---HHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHH------------hCCCCCEEEecCCCCCCH---
Q 023403 73 ISGCTSFSD---HALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR------------NCNQLQSLNLGWCEDVGD--- 134 (282)
Q Consensus 73 l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~------------~~~~L~~L~l~~~~~~~~--- 134 (282)
++.+ -+++ ..+..+...+..|++|.+.+|. ++..+-..+.+ .-+.|+.+...++ .+.+
T Consensus 99 LSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~G--lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga 174 (382)
T KOG1909|consen 99 LSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCG--LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGA 174 (382)
T ss_pred cccc-ccCccchHHHHHHHHhccCHHHHhhhcCC--CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccH
Confidence 9984 4433 4556666778999999999987 56554444332 2357888888773 4443
Q ss_pred HHHHHHHhcCCCCcEEEecCCCccCHHHHHHH---HhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccC
Q 023403 135 VGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL---ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRY 211 (282)
Q Consensus 135 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 211 (282)
..+...+...+.|+++.+..+ .+...++..+ ++.|++|+.|++..+ -++..+-..+++. ++
T Consensus 175 ~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~Laka--------------L~ 238 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKA--------------LS 238 (382)
T ss_pred HHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHH--------------hc
Confidence 345556667789999999994 6655554322 347899999999995 4666555555554 45
Q ss_pred cccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCC
Q 023403 212 DEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 212 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~ 257 (282)
.+++|++|++++| .+.+.+-..+...+.+. .|+|+.|.+.||.
T Consensus 239 s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~--~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 239 SWPHLRELNLGDC-LLENEGAIAFVDALKES--APSLEVLELAGNE 281 (382)
T ss_pred ccchheeeccccc-ccccccHHHHHHHHhcc--CCCCceeccCcch
Confidence 5699999999997 46555666666555543 5788999999996
No 11
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=9.6e-14 Score=115.70 Aligned_cols=220 Identities=23% Similarity=0.167 Sum_probs=143.1
Q ss_pred cCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHH
Q 023403 10 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 89 (282)
Q Consensus 10 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 89 (282)
.++.+|+.+.|.++ .+...........||+++.|+|+.+-......+..++..+|+|+.|+++.+ .+....-.....
T Consensus 118 sn~kkL~~IsLdn~--~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNY--RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCc--cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchh
Confidence 45778888888875 444444335567799999999999755556778888888999999999874 332221112223
Q ss_pred cCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhc
Q 023403 90 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG 169 (282)
Q Consensus 90 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 169 (282)
.+++|+.|.++.|. ++......+...+|+|+.|++..++.+.-..... ..++.|++|++++++.++.+.+... ..
T Consensus 195 ~l~~lK~L~l~~CG--ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~-~~ 269 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCG--LSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKV-GT 269 (505)
T ss_pred hhhhhheEEeccCC--CCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccccccccc-cc
Confidence 57899999999998 7888888888889999999998864332211111 1245799999999766665444433 35
Q ss_pred CCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcc
Q 023403 170 CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRH 249 (282)
Q Consensus 170 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~ 249 (282)
+|.|..|+++.|. +........... .....+++|++|++..++-....++. +++.+++|+
T Consensus 270 l~~L~~Lnls~tg-i~si~~~d~~s~------------~kt~~f~kL~~L~i~~N~I~~w~sl~-------~l~~l~nlk 329 (505)
T KOG3207|consen 270 LPGLNQLNLSSTG-IASIAEPDVESL------------DKTHTFPKLEYLNISENNIRDWRSLN-------HLRTLENLK 329 (505)
T ss_pred ccchhhhhccccC-cchhcCCCccch------------hhhcccccceeeecccCccccccccc-------hhhccchhh
Confidence 8889999988874 332221111111 01234599999999995442333222 333456666
Q ss_pred eeeecCCC
Q 023403 250 SLVMSGCL 257 (282)
Q Consensus 250 ~L~l~~c~ 257 (282)
.|.+.+.+
T Consensus 330 ~l~~~~n~ 337 (505)
T KOG3207|consen 330 HLRITLNY 337 (505)
T ss_pred hhhccccc
Confidence 66665544
No 12
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.35 E-value=1.7e-12 Score=125.22 Aligned_cols=227 Identities=20% Similarity=0.150 Sum_probs=113.8
Q ss_pred HHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHH
Q 023403 7 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY 86 (282)
Q Consensus 7 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 86 (282)
..+..+++|+.|+++++ .+.+.....+...+++|++|++++|. ++..... ..+++|++|+++++ .+..... .
T Consensus 87 ~~~~~l~~L~~L~Ls~n--~~~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~~p~---~~l~~L~~L~Ls~n-~~~~~~p-~ 158 (968)
T PLN00113 87 SAIFRLPYIQTINLSNN--QLSGPIPDDIFTTSSSLRYLNLSNNN-FTGSIPR---GSIPNLETLDLSNN-MLSGEIP-N 158 (968)
T ss_pred hHHhCCCCCCEEECCCC--ccCCcCChHHhccCCCCCEEECcCCc-cccccCc---cccCCCCEEECcCC-cccccCC-h
Confidence 34556788888888875 33333344444456778888887753 3221111 13577777777764 3322111 1
Q ss_pred HHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHH
Q 023403 87 LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL 166 (282)
Q Consensus 87 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l 166 (282)
....+++|+.|+++++. +.......+. .+++|+.|++.+|. +....... ...+++|++|+++++ .+++.....
T Consensus 159 ~~~~l~~L~~L~L~~n~--l~~~~p~~~~-~l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~- 231 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNV--LVGKIPNSLT-NLTSLEFLTLASNQ-LVGQIPRE-LGQMKSLKWIYLGYN-NLSGEIPYE- 231 (968)
T ss_pred HHhcCCCCCEEECccCc--ccccCChhhh-hCcCCCeeeccCCC-CcCcCChH-HcCcCCccEEECcCC-ccCCcCChh-
Confidence 22446777777777743 3333223332 46777777777643 33221112 234567777777774 444322222
Q ss_pred HhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCc-----chh-cc-cccCcccCcceEeccCCCCCCHHHHHHHHhhC
Q 023403 167 ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPG-----IWE-SM-KGRYDEEGLQSLNISQCTALTPPAVQALCDTF 239 (282)
Q Consensus 167 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~-----~~~-~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 239 (282)
+..+++|++|++++|. ++......+.... ..... .+. .+ .....+++|++|++++| .++......
T Consensus 232 l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~----- 303 (968)
T PLN00113 232 IGGLTSLNHLDLVYNN-LTGPIPSSLGNLK-NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN-SLSGEIPEL----- 303 (968)
T ss_pred HhcCCCCCEEECcCce-eccccChhHhCCC-CCCEEECcCCeeeccCchhHhhccCcCEEECcCC-eeccCCChh-----
Confidence 2346777777777753 3322222222210 00000 000 00 01233467777777764 333221111
Q ss_pred CCCccCCCcceeeecCCCC
Q 023403 240 PALHTCSGRHSLVMSGCLN 258 (282)
Q Consensus 240 ~~l~~~~~L~~L~l~~c~~ 258 (282)
+..+++|+.|++++|..
T Consensus 304 --~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 304 --VIQLQNLEILHLFSNNF 320 (968)
T ss_pred --HcCCCCCcEEECCCCcc
Confidence 23567788888888763
No 13
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.26 E-value=8.8e-12 Score=120.34 Aligned_cols=157 Identities=19% Similarity=0.125 Sum_probs=74.5
Q ss_pred CCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHc
Q 023403 11 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 90 (282)
Q Consensus 11 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 90 (282)
.+++|++|+++++ .+.......+ ..+++|++|++++| .+....+..+ ..+++|++|++++|. +...... ....
T Consensus 138 ~l~~L~~L~Ls~n--~~~~~~p~~~-~~l~~L~~L~L~~n-~l~~~~p~~~-~~l~~L~~L~L~~n~-l~~~~p~-~l~~ 210 (968)
T PLN00113 138 SIPNLETLDLSNN--MLSGEIPNDI-GSFSSLKVLDLGGN-VLVGKIPNSL-TNLTSLEFLTLASNQ-LVGQIPR-ELGQ 210 (968)
T ss_pred ccCCCCEEECcCC--cccccCChHH-hcCCCCCEEECccC-cccccCChhh-hhCcCCCeeeccCCC-CcCcCCh-HHcC
Confidence 4677777777765 3332222222 34667777777765 2322222223 236777777776642 2211111 1234
Q ss_pred CCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcC
Q 023403 91 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 170 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 170 (282)
+++|+.|+++++. +.+.....+ ..+++|++|++.+| .+..... .....+++|++|++++| .+.+.....+ ..+
T Consensus 211 l~~L~~L~L~~n~--l~~~~p~~l-~~l~~L~~L~L~~n-~l~~~~p-~~l~~l~~L~~L~L~~n-~l~~~~p~~l-~~l 283 (968)
T PLN00113 211 MKSLKWIYLGYNN--LSGEIPYEI-GGLTSLNHLDLVYN-NLTGPIP-SSLGNLKNLQYLFLYQN-KLSGPIPPSI-FSL 283 (968)
T ss_pred cCCccEEECcCCc--cCCcCChhH-hcCCCCCEEECcCc-eeccccC-hhHhCCCCCCEEECcCC-eeeccCchhH-hhc
Confidence 5666677666633 333322222 23566666666654 2322111 11224555666666653 3322111122 234
Q ss_pred CCCCEEeecCC
Q 023403 171 PHLRSLGLYYC 181 (282)
Q Consensus 171 ~~L~~L~l~~~ 181 (282)
++|+.|++++|
T Consensus 284 ~~L~~L~Ls~n 294 (968)
T PLN00113 284 QKLISLDLSDN 294 (968)
T ss_pred cCcCEEECcCC
Confidence 55566665554
No 14
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.6e-11 Score=102.71 Aligned_cols=194 Identities=19% Similarity=0.172 Sum_probs=123.9
Q ss_pred hCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHh
Q 023403 38 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN 117 (282)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 117 (282)
+..+|+++.|.++ .+...+.....+.||+++.|+++.+-......+..+..++|+|+.|+++... +..-.-......
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr--l~~~~~s~~~~~ 195 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR--LSNFISSNTTLL 195 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc--ccCCccccchhh
Confidence 3567888888875 4555555566777899999999875444556677788888999999988732 221111111124
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCc
Q 023403 118 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGV 197 (282)
Q Consensus 118 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 197 (282)
+++|+.|.++.| ++++..+..+...+|.|+.|.+.++..+....... ..+..|+.|+|+++..++.......+..
T Consensus 196 l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~l-- 270 (505)
T KOG3207|consen 196 LSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGTL-- 270 (505)
T ss_pred hhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccccccccccc--
Confidence 678899999887 57788888888788999999998864332211111 1234688899988877765544444333
Q ss_pred CCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCC
Q 023403 198 KNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~ 257 (282)
|.|+.|+++.| .+++...... ++......+|+|++|++...+
T Consensus 271 ----------------~~L~~Lnls~t-gi~si~~~d~-~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 271 ----------------PGLNQLNLSST-GIASIAEPDV-ESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred ----------------cchhhhhcccc-CcchhcCCCc-cchhhhcccccceeeecccCc
Confidence 88888888873 3432111110 111112456888999998665
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.07 E-value=3.2e-10 Score=110.73 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=30.6
Q ss_pred CcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccchh
Q 023403 211 YDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVH 263 (282)
Q Consensus 211 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~~~ 263 (282)
..+++|+.|++.+|+.+..... ....+++|+.+++++|++++.+.
T Consensus 866 ~~l~~L~~L~L~~C~~L~~l~~--------~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQRVSL--------NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred hcCCCCCEEECCCCCCcCccCc--------ccccccCCCeeecCCCccccccc
Confidence 4567788888888877753211 22356778888888998887654
No 16
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.03 E-value=7.7e-10 Score=101.27 Aligned_cols=208 Identities=19% Similarity=0.176 Sum_probs=122.7
Q ss_pred CccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHH-------HH------HcCCCCeEEEecCCccccc
Q 023403 41 DLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY-------LC------GFCRKLKILNLCGCVKAAT 107 (282)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------~~------~~~~~L~~L~l~~~~~~~~ 107 (282)
++..+++.+. ......+..+.+ ..|++|.+.+........... +. ..-.+|++|++++.. .+.
T Consensus 61 ~ltki~l~~~-~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~-~~s 136 (699)
T KOG3665|consen 61 NLTKIDLKNV-TLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSE-LFS 136 (699)
T ss_pred eeEEeeccce-ecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccc-hhh
Confidence 4666666653 344444444433 337777776544333222211 11 112477888887733 233
Q ss_pred HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHH
Q 023403 108 DYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDR 187 (282)
Q Consensus 108 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 187 (282)
..-...+...+|+|++|.+.+ ..+..+.+..+..++|+|..||++++ ++++- .-.+++++|+.|.+..-+..+..
T Consensus 137 ~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~LknLq~L~mrnLe~e~~~ 211 (699)
T KOG3665|consen 137 NGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGT-NISNL---SGISRLKNLQVLSMRNLEFESYQ 211 (699)
T ss_pred ccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCC-CccCc---HHHhccccHHHHhccCCCCCchh
Confidence 334445666678888888876 34555557777777888888888883 55532 23345677777777665444445
Q ss_pred HHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccchhhccC
Q 023403 188 AIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCA 267 (282)
Q Consensus 188 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~~ 267 (282)
.+..++.. ++|+.||++.-....+.-+-...-.++. .+|+||.|+.+|=. +++..+.+.
T Consensus 212 ~l~~LF~L------------------~~L~vLDIS~~~~~~~~~ii~qYlec~~--~LpeLrfLDcSgTd-i~~~~le~l 270 (699)
T KOG3665|consen 212 DLIDLFNL------------------KKLRVLDISRDKNNDDTKIIEQYLECGM--VLPELRFLDCSGTD-INEEILEEL 270 (699)
T ss_pred hHHHHhcc------------------cCCCeeeccccccccchHHHHHHHHhcc--cCccccEEecCCcc-hhHHHHHHH
Confidence 56666665 7888888887555544422222222222 36788888888644 777777788
Q ss_pred CCCcCCcCCCC
Q 023403 268 GQSHRTASSIP 278 (282)
Q Consensus 268 ~~~~~~~~~~~ 278 (282)
.++||++..+.
T Consensus 271 l~sH~~L~~i~ 281 (699)
T KOG3665|consen 271 LNSHPNLQQIA 281 (699)
T ss_pred HHhCccHhhhh
Confidence 88888776544
No 17
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.92 E-value=9.8e-09 Score=94.13 Aligned_cols=203 Identities=21% Similarity=0.258 Sum_probs=140.0
Q ss_pred CccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHH-----------HHHHH--HcCCCCcEEeccCCCCCC
Q 023403 14 KLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRS-----------LYALA--HGCPNLTRLNISGCTSFS 80 (282)
Q Consensus 14 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----------~~~~~--~~~~~L~~L~l~~~~~~~ 80 (282)
++..+++.+. .........+.. ..|+++.+.+........ +..++ ..-.+|++|+++|...+.
T Consensus 61 ~ltki~l~~~--~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s 136 (699)
T KOG3665|consen 61 NLTKIDLKNV--TLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFS 136 (699)
T ss_pred eeEEeeccce--ecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhh
Confidence 6777777754 445555555443 238888887642221111 11111 122689999999865554
Q ss_pred HHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCH
Q 023403 81 DHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITD 160 (282)
Q Consensus 81 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 160 (282)
..-...+..-+|+|+.|.+.+- .+..+.+..+++.+|+|..|+++++ ++++- ...+.+++|+.|.+.+...-+.
T Consensus 137 ~~W~~kig~~LPsL~sL~i~~~--~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~LknLq~L~mrnLe~e~~ 210 (699)
T KOG3665|consen 137 NGWPKKIGTMLPSLRSLVISGR--QFDNDDFSQLCASFPNLRSLDISGT-NISNL---SGISRLKNLQVLSMRNLEFESY 210 (699)
T ss_pred ccHHHHHhhhCcccceEEecCc--eecchhHHHHhhccCccceeecCCC-CccCc---HHHhccccHHHHhccCCCCCch
Confidence 4444556667899999999984 4777778888999999999999985 56643 2234678999999988654454
Q ss_pred HHHHHHHhcCCCCCEEeecCCCCCcHH-HHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhC
Q 023403 161 DSVIALANGCPHLRSLGLYYCRNITDR-AIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTF 239 (282)
Q Consensus 161 ~~l~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 239 (282)
..+..+.. +++|+.||++........ .++...+. ...+|+|+.||.++ ..++...++.+...=
T Consensus 211 ~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec--------------~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH 274 (699)
T KOG3665|consen 211 QDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLEC--------------GMVLPELRFLDCSG-TDINEEILEELLNSH 274 (699)
T ss_pred hhHHHHhc-ccCCCeeeccccccccchHHHHHHHHh--------------cccCccccEEecCC-cchhHHHHHHHHHhC
Confidence 66777776 899999999987666554 33333332 23469999999999 889999999888755
Q ss_pred CCC
Q 023403 240 PAL 242 (282)
Q Consensus 240 ~~l 242 (282)
|++
T Consensus 275 ~~L 277 (699)
T KOG3665|consen 275 PNL 277 (699)
T ss_pred ccH
Confidence 544
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.86 E-value=1.4e-10 Score=100.60 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=15.9
Q ss_pred CCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecC
Q 023403 91 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGW 128 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 128 (282)
+..|+.|++++ +++........ ..+++|++|+++.
T Consensus 292 Lt~L~~L~lS~--NaI~rih~d~W-sftqkL~~LdLs~ 326 (873)
T KOG4194|consen 292 LTSLEQLDLSY--NAIQRIHIDSW-SFTQKLKELDLSS 326 (873)
T ss_pred cchhhhhccch--hhhheeecchh-hhcccceeEeccc
Confidence 44555555555 32332222221 2355566666655
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.85 E-value=8.7e-09 Score=100.82 Aligned_cols=42 Identities=31% Similarity=0.482 Sum_probs=28.2
Q ss_pred CcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccc
Q 023403 211 YDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTS 261 (282)
Q Consensus 211 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~ 261 (282)
..+++|+.|++++|..++ .+|....+++|+.|++++|..++.
T Consensus 799 ~~L~~L~~L~Ls~C~~L~---------~LP~~~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLE---------TLPTGINLESLESLDLSGCSRLRT 840 (1153)
T ss_pred hCCCCCCEEECCCCCCcC---------eeCCCCCccccCEEECCCCCcccc
Confidence 455788888888877664 233322567788888888876654
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.59 E-value=1e-08 Score=89.27 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=31.2
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCC
Q 023403 119 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 181 (282)
Q Consensus 119 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 181 (282)
.++++|++.+ +.+++.+...+. .+..|.+|.++. +.++.-.... ++++++|+.|++..+
T Consensus 173 ~ni~~L~La~-N~It~l~~~~F~-~lnsL~tlkLsr-NrittLp~r~-Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 173 VNIKKLNLAS-NRITTLETGHFD-SLNSLLTLKLSR-NRITTLPQRS-FKRLPKLESLDLNRN 231 (873)
T ss_pred CCceEEeecc-cccccccccccc-ccchheeeeccc-CcccccCHHH-hhhcchhhhhhcccc
Confidence 4567777766 345543332222 344666666666 3454332222 234677777777664
No 21
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.57 E-value=4.9e-06 Score=66.40 Aligned_cols=222 Identities=19% Similarity=0.203 Sum_probs=127.3
Q ss_pred cCCCCccEEEccCCCCCCcHHHHHHHHh---hCCCccEEEcCCCC--CCChHHHH------HHHHcCCCCcEEeccCCCC
Q 023403 10 PKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDLDLSKSF--KLSDRSLY------ALAHGCPNLTRLNISGCTS 78 (282)
Q Consensus 10 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~--~~~~~~~~------~~~~~~~~L~~L~l~~~~~ 78 (282)
..+..+..++++++ .++......++. .-.+|+..++++-. ...+.... ..+..||+|+..+++.+ -
T Consensus 27 ~~~d~~~evdLSGN--tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-A 103 (388)
T COG5238 27 EMMDELVEVDLSGN--TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-A 103 (388)
T ss_pred HhhcceeEEeccCC--cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-c
Confidence 34778888999987 666555555443 34567788777521 11122111 12335899999999874 3
Q ss_pred CC---HHHHHHHHHcCCCCeEEEecCCcccccHH-------HHHHHH-----HhCCCCCEEEecCCCCC---CHHHHHHH
Q 023403 79 FS---DHALAYLCGFCRKLKILNLCGCVKAATDY-------ALQAIG-----RNCNQLQSLNLGWCEDV---GDVGVMNL 140 (282)
Q Consensus 79 ~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~l~-----~~~~~L~~L~l~~~~~~---~~~~~~~l 140 (282)
++ ++.+..+......|.+|.+++|. ++.. .+..++ ..-|.|+......+ ++ +..-....
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnG--lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~ 180 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNG--LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAAL 180 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCC--CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHH
Confidence 32 23455555566789999998864 3321 122222 12366777777653 32 22223333
Q ss_pred HhcCCCCcEEEecCCCccCHHHHHHHH----hcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCc
Q 023403 141 AYGCPDLRSLDLCGCVCITDDSVIALA----NGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGL 216 (282)
Q Consensus 141 ~~~~~~L~~L~l~~~~~l~~~~l~~l~----~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L 216 (282)
...-..|+++.+.+ +++...++.-++ ..+.+|+.|++..+ .++-.+-..++.. .+.++.|
T Consensus 181 l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~a--------------l~~W~~l 244 (388)
T COG5238 181 LESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADA--------------LCEWNLL 244 (388)
T ss_pred HHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHH--------------hcccchh
Confidence 33335788888888 577776554332 25688888888885 4554444444333 3344778
Q ss_pred ceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecC
Q 023403 217 QSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSG 255 (282)
Q Consensus 217 ~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~ 255 (282)
++|.+..| .++..+...+...+... -.|+|+.|....
T Consensus 245 rEL~lnDC-lls~~G~~~v~~~f~e~-~~p~l~~L~~~Y 281 (388)
T COG5238 245 RELRLNDC-LLSNEGVKSVLRRFNEK-FVPNLMPLPGDY 281 (388)
T ss_pred hhccccch-hhccccHHHHHHHhhhh-cCCCccccccch
Confidence 88888886 35555555555544443 335555554443
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.40 E-value=1.6e-08 Score=88.98 Aligned_cols=35 Identities=26% Similarity=0.167 Sum_probs=17.2
Q ss_pred CCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCC
Q 023403 144 CPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 181 (282)
Q Consensus 144 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 181 (282)
+.+|+.++++. +++.- ++...-..++|++|+++++
T Consensus 221 l~NL~dvDlS~-N~Lp~--vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 221 LHNLRDVDLSE-NNLPI--VPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hhhhhhccccc-cCCCc--chHHHhhhhhhheeccCcC
Confidence 44566666665 34431 1222223566666666664
No 23
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=4e-07 Score=73.36 Aligned_cols=146 Identities=18% Similarity=0.145 Sum_probs=96.5
Q ss_pred HHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHH
Q 023403 30 NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDY 109 (282)
Q Consensus 30 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 109 (282)
.....+...+..+++++|.++..-.+..+..+++.+|.|+.|+++. +.+... +..+.....+|+.|-+.+ ..+...
T Consensus 61 gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~s~-I~~lp~p~~nl~~lVLNg--T~L~w~ 136 (418)
T KOG2982|consen 61 GDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLSSD-IKSLPLPLKNLRVLVLNG--TGLSWT 136 (418)
T ss_pred hhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCCCc-cccCcccccceEEEEEcC--CCCChh
Confidence 4445555667788889998864334566777888889999999876 344322 222212356888888888 447777
Q ss_pred HHHHHHHhCCCCCEEEecCCCC----CCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCC
Q 023403 110 ALQAIGRNCNQLQSLNLGWCED----VGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 182 (282)
Q Consensus 110 ~~~~l~~~~~~L~~L~l~~~~~----~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 182 (282)
.........|.+++|.++.++- +.+.+... +-+.++++.+..|...-+..+..+.+.+|++..+-+..|+
T Consensus 137 ~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 137 QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred hhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 7777777788888888776411 12222222 2346777888887666666667777778888888888774
No 24
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=2.6e-07 Score=74.36 Aligned_cols=145 Identities=19% Similarity=0.147 Sum_probs=88.7
Q ss_pred HHHHccCCCCccEEEccCCCCCCc-HHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHH
Q 023403 5 VLSLAPKLTKLQTLVLRQDKPQLE-DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHA 83 (282)
Q Consensus 5 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 83 (282)
+..+...++.++.+|+.++ .++ ..-+..+..++|.|+.|+++.+. +.. .+..+-....+|++|.+.+ +.++...
T Consensus 63 ~~~~~~~~~~v~elDL~~N--~iSdWseI~~ile~lP~l~~LNls~N~-L~s-~I~~lp~p~~nl~~lVLNg-T~L~w~~ 137 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTGN--LISDWSEIGAILEQLPALTTLNLSCNS-LSS-DIKSLPLPLKNLRVLVLNG-TGLSWTQ 137 (418)
T ss_pred HHHHHHHhhhhhhhhcccc--hhccHHHHHHHHhcCccceEeeccCCc-CCC-ccccCcccccceEEEEEcC-CCCChhh
Confidence 4455667888999999986 444 34467788899999999999763 321 1111101257999999988 7888888
Q ss_pred HHHHHHcCCCCeEEEecCCcc-cccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCC
Q 023403 84 LAYLCGFCRKLKILNLCGCVK-AATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGC 155 (282)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 155 (282)
.......+|.++.|+++..+. .+.. .-..+-.+.+.+++|.+..|.-..+.....+...+|++..+.+..|
T Consensus 138 ~~s~l~~lP~vtelHmS~N~~rq~n~-Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 138 STSSLDDLPKVTELHMSDNSLRQLNL-DDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG 209 (418)
T ss_pred hhhhhhcchhhhhhhhccchhhhhcc-ccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC
Confidence 877878888888887765311 1110 1111112334566666666533233344444455566666655554
No 25
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.26 E-value=1.3e-08 Score=89.58 Aligned_cols=226 Identities=20% Similarity=0.154 Sum_probs=109.0
Q ss_pred HccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHH
Q 023403 8 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 87 (282)
Q Consensus 8 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 87 (282)
++.++..|-.|||+++....-++..+. +.+|+.|.|++++ +....+..+ ..+..|++|.+++ +.-+...++..
T Consensus 145 lfinLtDLLfLDLS~NrLe~LPPQ~RR----L~~LqtL~Ls~NP-L~hfQLrQL-PsmtsL~vLhms~-TqRTl~N~Pts 217 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNNRLEMLPPQIRR----LSMLQTLKLSNNP-LNHFQLRQL-PSMTSLSVLHMSN-TQRTLDNIPTS 217 (1255)
T ss_pred HHHhhHhHhhhccccchhhhcCHHHHH----HhhhhhhhcCCCh-hhHHHHhcC-ccchhhhhhhccc-ccchhhcCCCc
Confidence 344566777788887643333333333 3478888888863 433333322 2345566666666 33332222222
Q ss_pred HHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHH
Q 023403 88 CGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALA 167 (282)
Q Consensus 88 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~ 167 (282)
...+.+|..++++...-..-.+.+ . .+++|+.|++++ +.++.-.+. .....+|++|+++.+ .++.- ..+++
T Consensus 218 ld~l~NL~dvDlS~N~Lp~vPecl---y-~l~~LrrLNLS~-N~iteL~~~--~~~W~~lEtLNlSrN-QLt~L-P~avc 288 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLPIVPECL---Y-KLRNLRRLNLSG-NKITELNMT--EGEWENLETLNLSRN-QLTVL-PDAVC 288 (1255)
T ss_pred hhhhhhhhhccccccCCCcchHHH---h-hhhhhheeccCc-Cceeeeecc--HHHHhhhhhhccccc-hhccc-hHHHh
Confidence 334567778887763311122222 2 367788888877 345532211 112346777777773 44321 12232
Q ss_pred hcCCCCCEEeecCCCCCcHHH-HHHHHhcC----cCCCCcchhcc-cccCcccCcceEeccCCCCCCHHHHHHHHhhCC-
Q 023403 168 NGCPHLRSLGLYYCRNITDRA-IYSLAQSG----VKNKPGIWESM-KGRYDEEGLQSLNISQCTALTPPAVQALCDTFP- 240 (282)
Q Consensus 168 ~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~----~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~- 240 (282)
. +++|+.|-+..+. ++-.+ ...+++.. .......++.+ .+++-|++|+.|.++.+.-++ +|
T Consensus 289 K-L~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT----------LPe 356 (1255)
T KOG0444|consen 289 K-LTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT----------LPE 356 (1255)
T ss_pred h-hHHHHHHHhccCc-ccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee----------chh
Confidence 2 4556665554432 22111 01111110 00000001111 114455777777777744443 22
Q ss_pred CCccCCCcceeeecCCCCccc
Q 023403 241 ALHTCSGRHSLVMSGCLNLTS 261 (282)
Q Consensus 241 ~l~~~~~L~~L~l~~c~~~~~ 261 (282)
..+-++.|+.|++...+++..
T Consensus 357 aIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhhhcCCcceeeccCCcCccC
Confidence 123456677888887776643
No 26
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=1.9e-06 Score=65.63 Aligned_cols=88 Identities=22% Similarity=0.334 Sum_probs=57.0
Q ss_pred CCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCC
Q 023403 121 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNK 200 (282)
Q Consensus 121 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 200 (282)
++.++-++ ..+..+++..+- .++.++.|.+.+|..++|.++..+....++|+.|++++|..|++.+++-+.+.
T Consensus 103 IeaVDAsd-s~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l----- 175 (221)
T KOG3864|consen 103 IEAVDASD-SSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL----- 175 (221)
T ss_pred EEEEecCC-chHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh-----
Confidence 34444444 235555555554 56667777777777777777766666666777777777777777777776665
Q ss_pred CcchhcccccCcccCcceEeccCCCCCC
Q 023403 201 PGIWESMKGRYDEEGLQSLNISQCTALT 228 (282)
Q Consensus 201 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 228 (282)
++|+.|.|.+.+.+.
T Consensus 176 -------------knLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 176 -------------KNLRRLHLYDLPYVA 190 (221)
T ss_pred -------------hhhHHHHhcCchhhh
Confidence 677777777655554
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.22 E-value=2e-07 Score=85.26 Aligned_cols=125 Identities=18% Similarity=0.146 Sum_probs=64.1
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCC--CccCHHHHHHHHhcCCCCCEEeecCCCCCcHH-HHHHHHhcC
Q 023403 120 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGC--VCITDDSVIALANGCPHLRSLGLYYCRNITDR-AIYSLAQSG 196 (282)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~ 196 (282)
.|+.|++.+ +.++|..+..+. +++.|+.|+++++ +.+.+..+ ..+..|+.|+++++..-+-. .+.......
T Consensus 360 ~Lq~Lylan-N~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNkL~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 360 ALQELYLAN-NHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNKLTTLPDTVANLGRLH 433 (1081)
T ss_pred HHHHHHHhc-Ccccccchhhhc-cccceeeeeecccccccCCHHHH----hchHHhHHHhcccchhhhhhHHHHhhhhhH
Confidence 355666666 456666555444 5667777777774 22333222 23456777777775322211 111110000
Q ss_pred -cCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCC
Q 023403 197 -VKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLN 258 (282)
Q Consensus 197 -~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~ 258 (282)
+--+.-.+..++-+...+.|+.+|++. ++++...+.... |. |+||+|+++|..+
T Consensus 434 tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~---p~----p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 434 TLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEAL---PS----PNLKYLDLSGNTR 488 (1081)
T ss_pred HHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhhC---CC----cccceeeccCCcc
Confidence 000111112222244558888888877 677655444332 21 6788888888874
No 28
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.19 E-value=4.1e-05 Score=61.29 Aligned_cols=205 Identities=20% Similarity=0.235 Sum_probs=131.1
Q ss_pred HHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcC---CCCcEEeccCCC-CC-CHH---H---HHHHHHcCCCCeEEE
Q 023403 30 NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC---PNLTRLNISGCT-SF-SDH---A---LAYLCGFCRKLKILN 98 (282)
Q Consensus 30 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~-~~-~~~---~---~~~~~~~~~~L~~L~ 98 (282)
..+..+.. +..+.+++||++ .++......+.... ++|+..+++... .. .+. . +......||+|+..+
T Consensus 21 ~v~eel~~-~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~ 98 (388)
T COG5238 21 GVVEELEM-MDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVD 98 (388)
T ss_pred HHHHHHHh-hcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence 45555544 789999999997 57777666655433 566666665421 11 111 1 111223589999999
Q ss_pred ecCCcccccHHHHHHH---HHhCCCCCEEEecCCCCCCHHH-------HHHHH-----hcCCCCcEEEecCCCc--cCHH
Q 023403 99 LCGCVKAATDYALQAI---GRNCNQLQSLNLGWCEDVGDVG-------VMNLA-----YGCPDLRSLDLCGCVC--ITDD 161 (282)
Q Consensus 99 l~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~-------~~~l~-----~~~~~L~~L~l~~~~~--l~~~ 161 (282)
++. ++++......+ ......|++|.+++| .+.... +.++. ..-|.|+.+....+.- .+..
T Consensus 99 LSD--NAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 99 LSD--NAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred ccc--cccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH
Confidence 998 55765544433 344567999999875 454321 22222 2358899999988532 2334
Q ss_pred HHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCC
Q 023403 162 SVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPA 241 (282)
Q Consensus 162 ~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 241 (282)
.....++....|+.+.+..+ .|.+.++..+...+ +..+.+|+.|||.. +-++-.+-..++..++.
T Consensus 176 ~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~g-------------l~y~~~LevLDlqD-Ntft~~gS~~La~al~~ 240 (388)
T COG5238 176 LSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLG-------------LFYSHSLEVLDLQD-NTFTLEGSRYLADALCE 240 (388)
T ss_pred HHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHH-------------HHHhCcceeeeccc-cchhhhhHHHHHHHhcc
Confidence 44555665568999999995 57766544432221 12238999999999 77887777777776664
Q ss_pred CccCCCcceeeecCCC
Q 023403 242 LHTCSGRHSLVMSGCL 257 (282)
Q Consensus 242 l~~~~~L~~L~l~~c~ 257 (282)
- +.|+.|.+..|-
T Consensus 241 W---~~lrEL~lnDCl 253 (388)
T COG5238 241 W---NLLRELRLNDCL 253 (388)
T ss_pred c---chhhhccccchh
Confidence 3 458999999995
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.13 E-value=2.9e-07 Score=84.28 Aligned_cols=130 Identities=22% Similarity=0.275 Sum_probs=84.5
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCC
Q 023403 66 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 145 (282)
Q Consensus 66 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 145 (282)
+.|+.|.+.+ +.+++..+..+. ++++|+.|++++ +.++...... .+.++.|++|+++++ .+.. +..-...++
T Consensus 359 ~~Lq~Lylan-N~Ltd~c~p~l~-~~~hLKVLhLsy--NrL~~fpas~-~~kle~LeeL~LSGN-kL~~--Lp~tva~~~ 430 (1081)
T KOG0618|consen 359 AALQELYLAN-NHLTDSCFPVLV-NFKHLKVLHLSY--NRLNSFPASK-LRKLEELEELNLSGN-KLTT--LPDTVANLG 430 (1081)
T ss_pred HHHHHHHHhc-Ccccccchhhhc-cccceeeeeecc--cccccCCHHH-HhchHHhHHHhcccc-hhhh--hhHHHHhhh
Confidence 4566777766 567777666554 478899999988 4344322222 235778889999884 4432 222233567
Q ss_pred CCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCC
Q 023403 146 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT 225 (282)
Q Consensus 146 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 225 (282)
.|++|...++ .+. .++.+.+ .+.|+.+|++.+ +++...+...... ++|++||++++.
T Consensus 431 ~L~tL~ahsN-~l~--~fPe~~~-l~qL~~lDlS~N-~L~~~~l~~~~p~------------------p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 431 RLHTLRAHSN-QLL--SFPELAQ-LPQLKVLDLSCN-NLSEVTLPEALPS------------------PNLKYLDLSGNT 487 (1081)
T ss_pred hhHHHhhcCC-cee--echhhhh-cCcceEEecccc-hhhhhhhhhhCCC------------------cccceeeccCCc
Confidence 8888888884 443 2345554 788999999885 5665544443332 789999999976
Q ss_pred C
Q 023403 226 A 226 (282)
Q Consensus 226 ~ 226 (282)
.
T Consensus 488 ~ 488 (1081)
T KOG0618|consen 488 R 488 (1081)
T ss_pred c
Confidence 5
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.08 E-value=9.7e-07 Score=67.19 Aligned_cols=129 Identities=23% Similarity=0.310 Sum_probs=43.7
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCC
Q 023403 40 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 119 (282)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 119 (282)
..+++|+|.++ .++ .+..+...+.+|++|+++++ .+.. +..+ ..+++|+.|++++ +.++... ..+...+|
T Consensus 19 ~~~~~L~L~~n-~I~--~Ie~L~~~l~~L~~L~Ls~N-~I~~--l~~l-~~L~~L~~L~L~~--N~I~~i~-~~l~~~lp 88 (175)
T PF14580_consen 19 VKLRELNLRGN-QIS--TIENLGATLDKLEVLDLSNN-QITK--LEGL-PGLPRLKTLDLSN--NRISSIS-EGLDKNLP 88 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--S--S---S-C-HHHHHH-T
T ss_pred ccccccccccc-ccc--cccchhhhhcCCCEEECCCC-CCcc--ccCc-cChhhhhhcccCC--CCCCccc-cchHHhCC
Confidence 35778888875 343 23334334678888888874 4433 2222 2367888888887 4355421 12223578
Q ss_pred CCCEEEecCCCCCCH-HHHHHHHhcCCCCcEEEecCCCccCH-HHH-HHHHhcCCCCCEEeecCC
Q 023403 120 QLQSLNLGWCEDVGD-VGVMNLAYGCPDLRSLDLCGCVCITD-DSV-IALANGCPHLRSLGLYYC 181 (282)
Q Consensus 120 ~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~l~~-~~l-~~l~~~~~~L~~L~l~~~ 181 (282)
+|++|++++ +.+.+ ..+..+ ..+|+|+.|++.+++ +++ ... ..++..+|+|+.||-...
T Consensus 89 ~L~~L~L~~-N~I~~l~~l~~L-~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 89 NLQELYLSN-NKISDLNELEPL-SSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp T--EEE-TT-S---SCCCCGGG-GG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred cCCEEECcC-CcCCChHHhHHH-HcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 888888877 44543 223333 357889999998853 332 222 233445899999987654
No 31
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=4e-06 Score=63.92 Aligned_cols=89 Identities=27% Similarity=0.399 Sum_probs=76.5
Q ss_pred CCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCC
Q 023403 93 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH 172 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 172 (282)
.++.++.+++. +..+++..+. .++.++.|.+.+|..+.|.++..+....++|+.|++++|+.+|+.++..+.. +++
T Consensus 102 ~IeaVDAsds~--I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSS--IMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKN 177 (221)
T ss_pred eEEEEecCCch--HHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhh
Confidence 46788888844 8888888875 6999999999999999999999888778999999999999999999988876 899
Q ss_pred CCEEeecCCCCCc
Q 023403 173 LRSLGLYYCRNIT 185 (282)
Q Consensus 173 L~~L~l~~~~~l~ 185 (282)
|+.|.+..-..+.
T Consensus 178 Lr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 178 LRRLHLYDLPYVA 190 (221)
T ss_pred hHHHHhcCchhhh
Confidence 9999998754433
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.93 E-value=1.9e-06 Score=65.62 Aligned_cols=130 Identities=26% Similarity=0.345 Sum_probs=48.3
Q ss_pred CCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcC
Q 023403 12 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 91 (282)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 91 (282)
..+++.|+|.++. ++ .+..+...+.+|+.|++++| .++. +..+ ..+++|++|+++++ .++... ..+...+
T Consensus 18 ~~~~~~L~L~~n~--I~--~Ie~L~~~l~~L~~L~Ls~N-~I~~--l~~l-~~L~~L~~L~L~~N-~I~~i~-~~l~~~l 87 (175)
T PF14580_consen 18 PVKLRELNLRGNQ--IS--TIENLGATLDKLEVLDLSNN-QITK--LEGL-PGLPRLKTLDLSNN-RISSIS-EGLDKNL 87 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS----S-C-HHHHHH-
T ss_pred ccccccccccccc--cc--cccchhhhhcCCCEEECCCC-CCcc--ccCc-cChhhhhhcccCCC-CCCccc-cchHHhC
Confidence 3468889999863 32 23444445679999999997 4442 2222 24799999999984 554321 1233358
Q ss_pred CCCeEEEecCCcccccH-HHHHHHHHhCCCCCEEEecCCCCCCHHH--HHHHHhcCCCCcEEEecCC
Q 023403 92 RKLKILNLCGCVKAATD-YALQAIGRNCNQLQSLNLGWCEDVGDVG--VMNLAYGCPDLRSLDLCGC 155 (282)
Q Consensus 92 ~~L~~L~l~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~ 155 (282)
|+|+.|++++ +.+.+ ..+..+ ..+++|+.|++.++ .+++.. =..+...+|+|+.||-...
T Consensus 88 p~L~~L~L~~--N~I~~l~~l~~L-~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 88 PNLQELYLSN--NKISDLNELEPL-SSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TT--EEE-TT--S---SCCCCGGG-GG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCEEECcC--CcCCChHHhHHH-HcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEc
Confidence 9999999998 44554 223333 35899999999875 454321 1224457899999987664
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.84 E-value=8.5e-06 Score=75.74 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=14.1
Q ss_pred CccCCCcceeeecCCCCccc
Q 023403 242 LHTCSGRHSLVMSGCLNLTS 261 (282)
Q Consensus 242 l~~~~~L~~L~l~~c~~~~~ 261 (282)
+..+++|+.|++++++ ++.
T Consensus 441 l~~L~~L~~LdLs~N~-Ls~ 459 (788)
T PRK15387 441 LIHLSSETTVNLEGNP-LSE 459 (788)
T ss_pred HhhccCCCeEECCCCC-CCc
Confidence 3457889999999987 443
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.80 E-value=1e-05 Score=76.60 Aligned_cols=111 Identities=20% Similarity=0.195 Sum_probs=49.3
Q ss_pred HccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHH
Q 023403 8 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 87 (282)
Q Consensus 8 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 87 (282)
++..+|.|+.||++++. . ....+..+. .+-+||+|+++++ .+. .++.-+..++.|.+|++..+..+... ...
T Consensus 566 ff~~m~~LrVLDLs~~~-~-l~~LP~~I~-~Li~LryL~L~~t-~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i 637 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNS-S-LSKLPSSIG-ELVHLRYLDLSDT-GIS--HLPSGLGNLKKLIYLNLEVTGRLESI--PGI 637 (889)
T ss_pred HHhhCcceEEEECCCCC-c-cCcCChHHh-hhhhhhcccccCC-Ccc--ccchHHHHHHhhheeccccccccccc--cch
Confidence 35556666666666531 1 112222222 2345666666653 333 22222233566666666553322111 222
Q ss_pred HHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEec
Q 023403 88 CGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLG 127 (282)
Q Consensus 88 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~ 127 (282)
...+.+|++|.+.......+...+..+ ..+.+|+.+...
T Consensus 638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSIT 676 (889)
T ss_pred hhhcccccEEEeeccccccchhhHHhh-hcccchhhheee
Confidence 233566666666553211222222222 334555555553
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.79 E-value=2.9e-06 Score=68.62 Aligned_cols=206 Identities=19% Similarity=0.246 Sum_probs=99.2
Q ss_pred HccCCCCccEEEccCCCCCCcHHHH-HH----HHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHH
Q 023403 8 LAPKLTKLQTLVLRQDKPQLEDNAV-EA----IANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDH 82 (282)
Q Consensus 8 ~~~~~~~L~~L~l~~~~~~~~~~~~-~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 82 (282)
++.-+.+|..|.+++....+....+ .. -...+.+|+.+.++.|. ...+..+...-|.|+.+.++.. .+...
T Consensus 177 ildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~s-~~~~~ 252 (490)
T KOG1259|consen 177 VLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHNT-TIQDV 252 (490)
T ss_pred HHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeecc-ccccc
Confidence 4445678888888875433321111 11 11336789999999873 2333333223488888888652 22110
Q ss_pred -HHHH---------------------HHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHH
Q 023403 83 -ALAY---------------------LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNL 140 (282)
Q Consensus 83 -~~~~---------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 140 (282)
.+-. ....+..|+.+++++ +.++. +..-..-.|.++.|+++.+ .+... ..+
T Consensus 253 ~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~--N~I~~--iDESvKL~Pkir~L~lS~N-~i~~v--~nL 325 (490)
T KOG1259|consen 253 PSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSG--NLITQ--IDESVKLAPKLRRLILSQN-RIRTV--QNL 325 (490)
T ss_pred ccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccc--cchhh--hhhhhhhccceeEEecccc-ceeee--hhh
Confidence 0000 001233555566655 22221 1111223466666666653 33321 111
Q ss_pred HhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEe
Q 023403 141 AYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLN 220 (282)
Q Consensus 141 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 220 (282)
..+++|++||++++ .++. +......+.+++.|.++++. ++.+.++..+.+|..||
T Consensus 326 -a~L~~L~~LDLS~N-~Ls~--~~Gwh~KLGNIKtL~La~N~---------------------iE~LSGL~KLYSLvnLD 380 (490)
T KOG1259|consen 326 -AELPQLQLLDLSGN-LLAE--CVGWHLKLGNIKTLKLAQNK---------------------IETLSGLRKLYSLVNLD 380 (490)
T ss_pred -hhcccceEeecccc-hhHh--hhhhHhhhcCEeeeehhhhh---------------------HhhhhhhHhhhhheecc
Confidence 13456666666663 3321 22222234566666666542 12222223336778888
Q ss_pred ccCCCCCC-HHHHHHHHhhCCCCccCCCcceeeecCCC
Q 023403 221 ISQCTALT-PPAVQALCDTFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 221 l~~~~~l~-~~~~~~l~~~~~~l~~~~~L~~L~l~~c~ 257 (282)
+++ +++. -+.++ +..++|-|+.+.+.+.|
T Consensus 381 l~~-N~Ie~ldeV~-------~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 381 LSS-NQIEELDEVN-------HIGNLPCLETLRLTGNP 410 (490)
T ss_pred ccc-cchhhHHHhc-------ccccccHHHHHhhcCCC
Confidence 877 3342 22222 22355667777777665
No 36
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.64 E-value=9.6e-05 Score=62.37 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=61.6
Q ss_pred cCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCc--HHHHHHHHhcC-cCCCCcchhccc--ccCcccCcc
Q 023403 143 GCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNIT--DRAIYSLAQSG-VKNKPGIWESMK--GRYDEEGLQ 217 (282)
Q Consensus 143 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~-~~~~~~~~~~~~--~~~~~~~L~ 217 (282)
.+++|..|+++++ -+.+-.. ++ .....|+.|+++.+. +. ......+.... ...++-.+.++. ++..+.+|.
T Consensus 433 ~l~kLt~L~L~NN-~Ln~LP~-e~-~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 433 QLQKLTFLDLSNN-LLNDLPE-EM-GSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred hhhcceeeecccc-hhhhcch-hh-hhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 4578888888883 4443221 22 235668999998863 33 12222221111 111111222222 256678999
Q ss_pred eEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCc
Q 023403 218 SLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNL 259 (282)
Q Consensus 218 ~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~ 259 (282)
.||+.++ . +....|.+++|.+|++|+++|.+.-
T Consensus 509 tLDL~nN-d--------lq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNN-D--------LQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCC-c--------hhhCChhhccccceeEEEecCCccC
Confidence 9999983 2 3345567889999999999999854
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.55 E-value=1.2e-05 Score=67.36 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=9.7
Q ss_pred HhcCCCCCEEeecCC
Q 023403 167 ANGCPHLRSLGLYYC 181 (282)
Q Consensus 167 ~~~~~~L~~L~l~~~ 181 (282)
++.+++|+.|+++++
T Consensus 270 f~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN 284 (498)
T ss_pred HhhcccceEeccCCC
Confidence 345677777777764
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.27 E-value=2.9e-05 Score=70.02 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=21.9
Q ss_pred HHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCC
Q 023403 35 IANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTS 78 (282)
Q Consensus 35 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 78 (282)
+....++++.|.+-..+.=....+-.+++ ++.|++|.+++|+-
T Consensus 79 i~d~lqkt~~lkl~~~pa~~pt~pi~ifp-F~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 79 ILDFLQKTKVLKLLPSPARDPTEPISIFP-FRSLRVLELRGCDL 121 (1096)
T ss_pred HHHHHhhheeeeecccCCCCCCCCceecc-ccceeeEEecCcch
Confidence 44445556665554322111111333443 67888888887643
No 39
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.19 E-value=0.00026 Score=66.11 Aligned_cols=81 Identities=17% Similarity=0.132 Sum_probs=42.9
Q ss_pred CCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHH--HHHHHHhcCcCCCCcchhcccc-cCcccCcceEec
Q 023403 145 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDR--AIYSLAQSGVKNKPGIWESMKG-RYDEEGLQSLNI 221 (282)
Q Consensus 145 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~--~~~~l~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l 221 (282)
..|+.|++++| .++. +.. ..++|+.|+++++. ++.. ....+.. +......+..++. +..+++|+.|++
T Consensus 382 ~~L~~LdLs~N-~Lt~--LP~---l~s~L~~LdLS~N~-LssIP~l~~~L~~--L~Ls~NqLt~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGN-RLTS--LPV---LPSELKELMVSGNR-LTSLPMLPSGLLS--LSVYRNQLTRLPESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCC-cccC--CCC---cccCCCEEEccCCc-CCCCCcchhhhhh--hhhccCcccccChHHhhccCCCeEEC
Confidence 46888888874 5542 221 23578888888764 3310 0011110 0001111111211 345689999999
Q ss_pred cCCCCCCHHHHHHH
Q 023403 222 SQCTALTPPAVQAL 235 (282)
Q Consensus 222 ~~~~~l~~~~~~~l 235 (282)
++ +.+++..+..+
T Consensus 453 s~-N~Ls~~~~~~L 465 (788)
T PRK15387 453 EG-NPLSERTLQAL 465 (788)
T ss_pred CC-CCCCchHHHHH
Confidence 99 66887777666
No 40
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.15 E-value=0.00057 Score=34.30 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=18.7
Q ss_pred cCcceEeccCCCCCCHHHHHHHH
Q 023403 214 EGLQSLNISQCTALTPPAVQALC 236 (282)
Q Consensus 214 ~~L~~L~l~~~~~l~~~~~~~l~ 236 (282)
++|++|++++|+.++|.++..+.
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 67888888888888888887765
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.77 E-value=0.0017 Score=61.90 Aligned_cols=214 Identities=18% Similarity=0.097 Sum_probs=106.6
Q ss_pred CCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhC
Q 023403 39 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 118 (282)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 118 (282)
++.|++|-+.++..........++..+|.|.+|++++|..+ ..++...+.+-+|++|++.+.. +. .+..-...+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l--~~LP~~I~~Li~LryL~L~~t~--I~--~LP~~l~~L 617 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL--SKLPSSIGELVHLRYLDLSDTG--IS--HLPSGLGNL 617 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc--CcCChHHhhhhhhhcccccCCC--cc--ccchHHHHH
Confidence 56677777776421011222334455788888888865443 2233334456778888877733 33 122222345
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCC-ccCHHHHHHHHhcCCCCCEEeecCCCC---CcHHHHHHHHh
Q 023403 119 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV-CITDDSVIALANGCPHLRSLGLYYCRN---ITDRAIYSLAQ 194 (282)
Q Consensus 119 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~---l~~~~~~~l~~ 194 (282)
+.|.+|++........ +..+...+++|+.|.+.... ..+...+..+ +.+.+|+.+....+.. ..-..+..+..
T Consensus 618 k~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~ 694 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISSVLLLEDLLGMTRLRS 694 (889)
T ss_pred Hhhheecccccccccc--ccchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheeecchhHhHhhhhhhHHHHH
Confidence 6777777765432211 13333346778888777632 2222223333 3455666666544332 00011111111
Q ss_pred cCcCCC---CcchhcccccCcccCcceEeccCCCCCCHHH-----------HHHH----HhhCCCCc------cCCCcce
Q 023403 195 SGVKNK---PGIWESMKGRYDEEGLQSLNISQCTALTPPA-----------VQAL----CDTFPALH------TCSGRHS 250 (282)
Q Consensus 195 ~~~~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-----------~~~l----~~~~~~l~------~~~~L~~ 250 (282)
...... ...-........+.+|+.|.+.+|....... +..+ ...+..++ --|+|+.
T Consensus 695 ~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~ 774 (889)
T KOG4658|consen 695 LLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTS 774 (889)
T ss_pred HhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccE
Confidence 110000 1111122225567899999999976642111 1111 11222221 2389999
Q ss_pred eeecCCCCccc
Q 023403 251 LVMSGCLNLTS 261 (282)
Q Consensus 251 L~l~~c~~~~~ 261 (282)
|.+.+|..+++
T Consensus 775 l~l~~~~~~e~ 785 (889)
T KOG4658|consen 775 LSLVSCRLLED 785 (889)
T ss_pred EEEeccccccc
Confidence 99999987776
No 42
>PLN03150 hypothetical protein; Provisional
Probab=96.71 E-value=0.0027 Score=58.68 Aligned_cols=110 Identities=17% Similarity=0.154 Sum_probs=66.8
Q ss_pred CccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCC
Q 023403 41 DLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQ 120 (282)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 120 (282)
.++.|+|+++ .+.......+. .+++|++|+++++ .+... +......+++|+.|+++++. +++.....+. .+++
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~i~-~L~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~~LdLs~N~--lsg~iP~~l~-~L~~ 491 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPNDIS-KLRHLQSINLSGN-SIRGN-IPPSLGSITSLEVLDLSYNS--FNGSIPESLG-QLTS 491 (623)
T ss_pred EEEEEECCCC-CccccCCHHHh-CCCCCCEEECCCC-cccCc-CChHHhCCCCCCEEECCCCC--CCCCCchHHh-cCCC
Confidence 3778888875 44433333343 4889999999874 44322 22223458899999998843 6654444443 5788
Q ss_pred CCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCcc
Q 023403 121 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCI 158 (282)
Q Consensus 121 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l 158 (282)
|+.|+++++ .++......+......+..+++.++..+
T Consensus 492 L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 492 LRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCEEECcCC-cccccCChHHhhccccCceEEecCCccc
Confidence 999999875 4543322223222345677888876443
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.67 E-value=0.0011 Score=54.09 Aligned_cols=176 Identities=18% Similarity=0.138 Sum_probs=98.5
Q ss_pred CCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChH----------------------HHHHHHHcCCCC
Q 023403 11 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDR----------------------SLYALAHGCPNL 68 (282)
Q Consensus 11 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------------------~~~~~~~~~~~L 68 (282)
-|.+|..+.++.++ ...+..+...-|.|+.+.+... .+.+. ........+..|
T Consensus 212 ~f~~l~~~~~s~~~----~~~i~~~~~~kptl~t~~v~~s-~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 212 AFRNLKTLKFSALS----TENIVDIELLKPTLQTICVHNT-TIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred Hhhhhheeeeeccc----hhheeceeecCchhheeeeecc-cccccccccchhhhcCccCCCCCccCCceEEecchHhhh
Confidence 36678888888652 3334444444567777766542 11110 000112345678
Q ss_pred cEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCc
Q 023403 69 TRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 148 (282)
Q Consensus 69 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 148 (282)
++++++++ .++. +..-..-.|.++.|++++.. +..-. . .+.+++|++|+++++ .++. +..+-..+-+++
T Consensus 287 telDLS~N-~I~~--iDESvKL~Pkir~L~lS~N~--i~~v~--n-La~L~~L~~LDLS~N-~Ls~--~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 287 TELDLSGN-LITQ--IDESVKLAPKLRRLILSQNR--IRTVQ--N-LAELPQLQLLDLSGN-LLAE--CVGWHLKLGNIK 355 (490)
T ss_pred hhcccccc-chhh--hhhhhhhccceeEEeccccc--eeeeh--h-hhhcccceEeecccc-hhHh--hhhhHhhhcCEe
Confidence 88888873 4432 22333446889999998833 44322 2 235788999999874 3432 222323345788
Q ss_pred EEEecCCCccC-HHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCC
Q 023403 149 SLDLCGCVCIT-DDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT 225 (282)
Q Consensus 149 ~L~l~~~~~l~-~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 225 (282)
+|.+.++ .+. -.++.. +=+|..|++.++..-..+.+..+++ +|-|+++.+.++|
T Consensus 356 tL~La~N-~iE~LSGL~K----LYSLvnLDl~~N~Ie~ldeV~~IG~------------------LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 356 TLKLAQN-KIETLSGLRK----LYSLVNLDLSSNQIEELDEVNHIGN------------------LPCLETLRLTGNP 410 (490)
T ss_pred eeehhhh-hHhhhhhhHh----hhhheeccccccchhhHHHhccccc------------------ccHHHHHhhcCCC
Confidence 8888884 332 222322 3468888888864222233333333 3788888888754
No 44
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.64 E-value=0.003 Score=31.59 Aligned_cols=24 Identities=54% Similarity=0.933 Sum_probs=13.3
Q ss_pred CCCCCEEeecCCCCCcHHHHHHHH
Q 023403 170 CPHLRSLGLYYCRNITDRAIYSLA 193 (282)
Q Consensus 170 ~~~L~~L~l~~~~~l~~~~~~~l~ 193 (282)
|++|++|++++|..+++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 345555566655555555555543
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.59 E-value=0.00014 Score=45.16 Aligned_cols=15 Identities=13% Similarity=-0.046 Sum_probs=9.5
Q ss_pred ccCCCcceeeecCCC
Q 023403 243 HTCSGRHSLVMSGCL 257 (282)
Q Consensus 243 ~~~~~L~~L~l~~c~ 257 (282)
..+++|++|++++|.
T Consensus 46 ~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 46 SNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTSTTESEEEETSSS
T ss_pred cCCCCCCEEeCcCCc
Confidence 355666777776664
No 46
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.56 E-value=0.0032 Score=59.13 Aligned_cols=10 Identities=40% Similarity=0.581 Sum_probs=4.7
Q ss_pred cCcceEeccC
Q 023403 214 EGLQSLNISQ 223 (282)
Q Consensus 214 ~~L~~L~l~~ 223 (282)
++|+.|++++
T Consensus 346 ~sL~~L~Ls~ 355 (754)
T PRK15370 346 PELQVLDVSK 355 (754)
T ss_pred CcccEEECCC
Confidence 3444444444
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.52 E-value=0.0037 Score=53.92 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=60.2
Q ss_pred CCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhC
Q 023403 39 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 118 (282)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 118 (282)
++++++|++++| .++.. + ..-++|++|.+++|..+... .... .++|+.|.+.+|.. +. .-.
T Consensus 51 ~~~l~~L~Is~c-~L~sL--P---~LP~sLtsL~Lsnc~nLtsL--P~~L--P~nLe~L~Ls~Cs~-L~--------sLP 111 (426)
T PRK15386 51 ARASGRLYIKDC-DIESL--P---VLPNELTEITIENCNNLTTL--PGSI--PEGLEKLTVCHCPE-IS--------GLP 111 (426)
T ss_pred hcCCCEEEeCCC-CCccc--C---CCCCCCcEEEccCCCCcccC--Cchh--hhhhhheEccCccc-cc--------ccc
Confidence 577888888877 34322 1 11246888888877665221 1111 24788888887642 21 113
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCC
Q 023403 119 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNI 184 (282)
Q Consensus 119 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l 184 (282)
++|+.|++... .... + ..-.+.|++|.+.++.......+... -.++|++|++.+|..+
T Consensus 112 ~sLe~L~L~~n-~~~~--L---~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 112 ESVRSLEIKGS-ATDS--I---KNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI 169 (426)
T ss_pred cccceEEeCCC-CCcc--c---ccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc
Confidence 45777777542 2211 1 11234566676654221111111111 1246777777776533
No 48
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.52 E-value=1.5e-05 Score=59.38 Aligned_cols=131 Identities=21% Similarity=0.178 Sum_probs=54.4
Q ss_pred CccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCC
Q 023403 41 DLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQ 120 (282)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 120 (282)
+++.|.++.+ .++. ..+.++. +.+|++|++++ +.+.. +..-...++.|++|+++...-.+...++ ..+|.
T Consensus 34 ~ITrLtLSHN-Kl~~-vppnia~-l~nlevln~~n-nqie~--lp~~issl~klr~lnvgmnrl~~lprgf----gs~p~ 103 (264)
T KOG0617|consen 34 NITRLTLSHN-KLTV-VPPNIAE-LKNLEVLNLSN-NQIEE--LPTSISSLPKLRILNVGMNRLNILPRGF----GSFPA 103 (264)
T ss_pred hhhhhhcccC-ceee-cCCcHHH-hhhhhhhhccc-chhhh--cChhhhhchhhhheecchhhhhcCcccc----CCCch
Confidence 4555566654 2221 1122222 56666666655 23321 1112233556666665542110111111 13556
Q ss_pred CCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCc
Q 023403 121 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNIT 185 (282)
Q Consensus 121 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~ 185 (282)
|+.|+++++ ++++..+..-+..+..|+-|.++++ .+. -++.-.+.+++|+-|.+..++.++
T Consensus 104 levldltyn-nl~e~~lpgnff~m~tlralyl~dn-dfe--~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 104 LEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDN-DFE--ILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred hhhhhcccc-ccccccCCcchhHHHHHHHHHhcCC-Ccc--cCChhhhhhcceeEEeeccCchhh
Confidence 666666653 3333222211112233455555553 221 111112235666666666655444
No 49
>PLN03150 hypothetical protein; Provisional
Probab=96.47 E-value=0.0043 Score=57.41 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=69.6
Q ss_pred CCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCC
Q 023403 67 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 146 (282)
Q Consensus 67 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 146 (282)
.++.|+++++ .+....... ...+++|+.|+++++. +.+.....+ ..+++|+.|+++++ .++...... ...+++
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N~--l~g~iP~~~-~~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGNS--IRGNIPPSL-GSITSLEVLDLSYN-SFNGSIPES-LGQLTS 491 (623)
T ss_pred EEEEEECCCC-CccccCCHH-HhCCCCCCEEECCCCc--ccCcCChHH-hCCCCCCEEECCCC-CCCCCCchH-HhcCCC
Confidence 3778888874 444332222 3458999999999853 555444344 45899999999985 455432222 346889
Q ss_pred CcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCC
Q 023403 147 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 182 (282)
Q Consensus 147 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 182 (282)
|+.|++++| .++......+.....++..+++.++.
T Consensus 492 L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 492 LRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCEEECcCC-cccccCChHHhhccccCceEEecCCc
Confidence 999999995 56544333333323466788888764
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.33 E-value=0.0011 Score=60.35 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=12.7
Q ss_pred CCCccEEEcCCCCCCChHHHH
Q 023403 39 CHDLQDLDLSKSFKLSDRSLY 59 (282)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~ 59 (282)
+..|++|.+.+|+.-+..++.
T Consensus 108 F~sLr~LElrg~~L~~~~GL~ 128 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQ 128 (1096)
T ss_pred ccceeeEEecCcchhhhhhhH
Confidence 567888888887543333333
No 51
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.33 E-value=0.00052 Score=57.91 Aligned_cols=114 Identities=23% Similarity=0.162 Sum_probs=55.3
Q ss_pred HHHccCCC-CccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHH
Q 023403 6 LSLAPKLT-KLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHAL 84 (282)
Q Consensus 6 ~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 84 (282)
.++...+| ....|+|..+ .++ ......+...++|++|+|+.+ .++.....+ ++.+++|.+|.+.+.+.+++..-
T Consensus 59 ~eVP~~LP~~tveirLdqN--~I~-~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 59 TEVPANLPPETVEIRLDQN--QIS-SIPPGAFKTLHRLRRLDLSKN-NISFIAPDA-FKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred ccCcccCCCcceEEEeccC--Ccc-cCChhhccchhhhceeccccc-chhhcChHh-hhhhHhhhHHHhhcCCchhhhhh
Confidence 34444443 4555666544 333 222233344567888888775 444333333 33467777777666555544333
Q ss_pred HHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecC
Q 023403 85 AYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGW 128 (282)
Q Consensus 85 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 128 (282)
..+. .+..++-|.+.-+. +...- ...++.++++..|.+.+
T Consensus 134 ~~F~-gL~slqrLllNan~--i~Cir-~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 134 GAFG-GLSSLQRLLLNANH--INCIR-QDALRDLPSLSLLSLYD 173 (498)
T ss_pred hHhh-hHHHHHHHhcChhh--hcchh-HHHHHHhhhcchhcccc
Confidence 3322 24455555544311 22211 12223456666666655
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.27 E-value=0.00021 Score=44.37 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=27.6
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISG 75 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 75 (282)
|+|+.|+++++ .+.. ........+++|++|++++| .+..-.. ..+..+++|++|++++
T Consensus 1 p~L~~L~l~~n--~l~~-i~~~~f~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNN--KLTE-IPPDSFSNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSS--TESE-ECTTTTTTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETS
T ss_pred CcCcEEECCCC--CCCc-cCHHHHcCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcC
Confidence 45666666654 2221 11122334566666666654 3332111 1223456666666655
No 53
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.22 E-value=2.4e-05 Score=58.36 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=80.1
Q ss_pred CCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHc
Q 023403 11 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 90 (282)
Q Consensus 11 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 90 (282)
.+.++.+|.++++...+.++.++. +.+|+.|+++++ .+++ .+.++ ..+|.|+.|++.-+ .+. .+..-.+.
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~----l~nlevln~~nn-qie~-lp~~i-ssl~klr~lnvgmn-rl~--~lprgfgs 100 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAE----LKNLEVLNLSNN-QIEE-LPTSI-SSLPKLRILNVGMN-RLN--ILPRGFGS 100 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHH----hhhhhhhhcccc-hhhh-cChhh-hhchhhhheecchh-hhh--cCccccCC
Confidence 456788888888754444444443 468999999875 4442 22233 34788998888642 221 11112245
Q ss_pred CCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcC
Q 023403 91 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 170 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 170 (282)
+|.|+.|++.+.. +++..+..-+-....|+.|+++++ ++.- +..-...+.+|+.|.+.+++-++ ++.-++.+
T Consensus 101 ~p~levldltynn--l~e~~lpgnff~m~tlralyl~dn-dfe~--lp~dvg~lt~lqil~lrdndll~---lpkeig~l 172 (264)
T KOG0617|consen 101 FPALEVLDLTYNN--LNENSLPGNFFYMTTLRALYLGDN-DFEI--LPPDVGKLTNLQILSLRDNDLLS---LPKEIGDL 172 (264)
T ss_pred Cchhhhhhccccc--cccccCCcchhHHHHHHHHHhcCC-Cccc--CChhhhhhcceeEEeeccCchhh---CcHHHHHH
Confidence 7888999988732 443332211112334555666653 2211 11111234567777776643332 22222234
Q ss_pred CCCCEEeecCC
Q 023403 171 PHLRSLGLYYC 181 (282)
Q Consensus 171 ~~L~~L~l~~~ 181 (282)
..|++|.+.++
T Consensus 173 t~lrelhiqgn 183 (264)
T KOG0617|consen 173 TRLRELHIQGN 183 (264)
T ss_pred HHHHHHhcccc
Confidence 55666666664
No 54
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.13 E-value=0.0036 Score=55.63 Aligned_cols=201 Identities=25% Similarity=0.290 Sum_probs=89.2
Q ss_pred ccEEEccCCCCCCc-HHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCC----CCcEEeccCCCCCCHH---HHHH
Q 023403 15 LQTLVLRQDKPQLE-DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP----NLTRLNISGCTSFSDH---ALAY 86 (282)
Q Consensus 15 L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~---~~~~ 86 (282)
+..+.+.++..... ...+.......+.|+.|+++++ .+.+.+...+....+ .++.|++..| .++.. .+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHH
Confidence 45555555422111 1222333333456666666665 445555554443332 2444555443 22222 1222
Q ss_pred HHHcCCCCeEEEecCCcccccHHHHHHHHHh-------CCCCCEEEecCCCCCCHHHHHHH---HhcCCC-CcEEEecCC
Q 023403 87 LCGFCRKLKILNLCGCVKAATDYALQAIGRN-------CNQLQSLNLGWCEDVGDVGVMNL---AYGCPD-LRSLDLCGC 155 (282)
Q Consensus 87 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-------~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~-L~~L~l~~~ 155 (282)
.......++.++++.+. +...+...+.+. ..++++|++.+|. ++......+ ....+. +.++++..
T Consensus 167 ~L~~~~~l~~l~l~~n~--l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~- 242 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNG--LIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLAS- 242 (478)
T ss_pred HHhcccchhHHHHHhcc--cchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHh-
Confidence 22224455555555532 333333322221 2346666666653 333322222 222233 45566665
Q ss_pred CccCHHHHHHHHhcC----CCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHH
Q 023403 156 VCITDDSVIALANGC----PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPA 231 (282)
Q Consensus 156 ~~l~~~~l~~l~~~~----~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 231 (282)
+.+.|.++..+...+ +.++.+++..|. +++.+...+.+. +..++.++++.+.+ +.+++..
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~--------------l~~~~~l~~l~l~~-n~l~~~~ 306 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEV--------------LVSCRQLEELSLSN-NPLTDYG 306 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHH--------------HhhhHHHHHhhccc-CccccHH
Confidence 355555444443322 234666666653 444444444333 22335666666666 4555555
Q ss_pred HHHHHh
Q 023403 232 VQALCD 237 (282)
Q Consensus 232 ~~~l~~ 237 (282)
...+.+
T Consensus 307 ~~~~~~ 312 (478)
T KOG4308|consen 307 VELLLE 312 (478)
T ss_pred HHHHHH
Confidence 554443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.00 E-value=0.0062 Score=34.86 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=27.3
Q ss_pred cCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccch
Q 023403 214 EGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV 262 (282)
Q Consensus 214 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~~ 262 (282)
++|++|++++ +.+++..- .+.+|++|+.|++++++ ++++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~--------~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPP--------ELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETS-SS-SSHGG--------HGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccC-CCCcccCc--------hHhCCCCCCEEEecCCC-CCCC
Confidence 4799999999 56664211 14578999999999996 6653
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.87 E-value=0.0043 Score=49.55 Aligned_cols=37 Identities=32% Similarity=0.431 Sum_probs=16.1
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecC
Q 023403 65 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCG 101 (282)
Q Consensus 65 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 101 (282)
+|+|++|.++.++.-....+..+...+|+|+++++++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecC
Confidence 3455555554432222233333333445555555554
No 57
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.87 E-value=0.0075 Score=53.64 Aligned_cols=181 Identities=27% Similarity=0.317 Sum_probs=112.9
Q ss_pred HHHHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCC----ccEEEcCCCCCCChHHHHHH---HHcCCCCcEEeccCCC
Q 023403 5 VLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHD----LQDLDLSKSFKLSDRSLYAL---AHGCPNLTRLNISGCT 77 (282)
Q Consensus 5 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~----L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~ 77 (282)
+...+.-.+.|..|+++++ .+++.....+....+. ++.|.+..| .++..+...+ +.....++.++++.|
T Consensus 107 l~~~l~t~~~L~~L~l~~n--~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n- 182 (478)
T KOG4308|consen 107 LAQALKTLPTLGQLDLSGN--NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLN- 182 (478)
T ss_pred HHHHhcccccHhHhhcccC--CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhc-
Confidence 3444556789999999987 5566666666654443 667788777 4555543333 223677888888875
Q ss_pred CCCHHHHHHHH---H----cCCCCeEEEecCCcccccHHHHHHHHHhC---CC-CCEEEecCCCCCCHHHHHHHHhcC--
Q 023403 78 SFSDHALAYLC---G----FCRKLKILNLCGCVKAATDYALQAIGRNC---NQ-LQSLNLGWCEDVGDVGVMNLAYGC-- 144 (282)
Q Consensus 78 ~~~~~~~~~~~---~----~~~~L~~L~l~~~~~~~~~~~~~~l~~~~---~~-L~~L~l~~~~~~~~~~~~~l~~~~-- 144 (282)
.+.......+. . ...+++.|.+.+|. ++......+...+ ++ +.++++.. +.+.|.++..+...+
T Consensus 183 ~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~--~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~ 259 (478)
T KOG4308|consen 183 GLIELGLLVLSQALESAASPLSSLETLKLSRCG--VTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSV 259 (478)
T ss_pred ccchhhhHHHhhhhhhhhcccccHHHHhhhhcC--cChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcc
Confidence 33232222222 1 24578899999976 5555544444333 44 66688876 567777666666544
Q ss_pred --CCCcEEEecCCCccCHHHHHHH---HhcCCCCCEEeecCCCCCcHHHHHHHHh
Q 023403 145 --PDLRSLDLCGCVCITDDSVIAL---ANGCPHLRSLGLYYCRNITDRAIYSLAQ 194 (282)
Q Consensus 145 --~~L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 194 (282)
+.++++++..| .+++.+...+ ...++.++.+.+..+ .+.+.+...+.+
T Consensus 260 ~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~ 312 (478)
T KOG4308|consen 260 LSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLE 312 (478)
T ss_pred cchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHH
Confidence 35689999995 6666555443 346778999999885 465555544433
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.0042 Score=50.26 Aligned_cols=115 Identities=23% Similarity=0.198 Sum_probs=66.8
Q ss_pred CCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcC
Q 023403 12 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 91 (282)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 91 (282)
+.+.+.|+..|+ .+++-. ++..||.|+.|.|+-| .++ .+..+ ..|++|++|.++. +.+.+..-.....++
T Consensus 18 l~~vkKLNcwg~--~L~DIs---ic~kMp~lEVLsLSvN-kIs--sL~pl-~rCtrLkElYLRk-N~I~sldEL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGC--GLDDIS---ICEKMPLLEVLSLSVN-KIS--SLAPL-QRCTRLKELYLRK-NCIESLDELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCC--CccHHH---HHHhcccceeEEeecc-ccc--cchhH-HHHHHHHHHHHHh-cccccHHHHHHHhcC
Confidence 456777777776 444433 4456888888888875 343 22222 2488888888876 455444433445668
Q ss_pred CCCeEEEecC--CcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHH
Q 023403 92 RKLKILNLCG--CVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMN 139 (282)
Q Consensus 92 ~~L~~L~l~~--~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 139 (282)
|+|+.|.+.. |.......--....+.+|+|++|+=. .++.+.+..
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv---~VteeEle~ 134 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV---PVTEEELEE 134 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhccCc---cccHHHHHH
Confidence 8888887754 21111222233344567888887642 344444443
No 59
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.70 E-value=0.036 Score=52.27 Aligned_cols=142 Identities=18% Similarity=0.198 Sum_probs=72.5
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 92 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 92 (282)
++|+.|+++++ .++. ....+ .++|+.|++++| .+.. ++.-. ..+|+.|++++ +.+.. +... -.+
T Consensus 220 ~nL~~L~Ls~N--~Lts-LP~~l---~~~L~~L~Ls~N-~L~~--LP~~l--~s~L~~L~Ls~-N~L~~--LP~~--l~~ 283 (754)
T PRK15370 220 GNIKTLYANSN--QLTS-IPATL---PDTIQEMELSIN-RITE--LPERL--PSALQSLDLFH-NKISC--LPEN--LPE 283 (754)
T ss_pred cCCCEEECCCC--cccc-CChhh---hccccEEECcCC-ccCc--CChhH--hCCCCEEECcC-CccCc--cccc--cCC
Confidence 58899998876 3331 11122 246888888876 3432 11111 25788888876 34432 1111 124
Q ss_pred CCeEEEecCCcccccHH------HHHHHH-----------HhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCC
Q 023403 93 KLKILNLCGCVKAATDY------ALQAIG-----------RNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGC 155 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~------~~~~l~-----------~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 155 (282)
+|+.|++++|. ++.. .+..+. ...++|+.|++.+| .++. +.. ..++.|+.|++++|
T Consensus 284 sL~~L~Ls~N~--Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt~--LP~--~l~~sL~~L~Ls~N 356 (754)
T PRK15370 284 ELRYLSVYDNS--IRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALTS--LPA--SLPPELQVLDVSKN 356 (754)
T ss_pred CCcEEECCCCc--cccCcccchhhHHHHHhcCCccccCCccccccceeccccCC-cccc--CCh--hhcCcccEEECCCC
Confidence 77788777743 3310 011100 01245677777664 2332 111 11357888888885
Q ss_pred CccCHHHHHHHHhcCCCCCEEeecCCC
Q 023403 156 VCITDDSVIALANGCPHLRSLGLYYCR 182 (282)
Q Consensus 156 ~~l~~~~l~~l~~~~~~L~~L~l~~~~ 182 (282)
.++. ++.-+ .++|+.|++++|.
T Consensus 357 -~L~~--LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 357 -QITV--LPETL--PPTITTLDVSRNA 378 (754)
T ss_pred -CCCc--CChhh--cCCcCEEECCCCc
Confidence 4542 22111 3578888888864
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.0034 Score=50.77 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=15.7
Q ss_pred cCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCC
Q 023403 143 GCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 181 (282)
Q Consensus 143 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 181 (282)
.|.+|++|.|.. +.+.+-.-.+.++++|+|+.|.|..+
T Consensus 61 rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 61 RCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccC
Confidence 344455555544 23332222222334455555555443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.03 E-value=0.015 Score=44.84 Aligned_cols=80 Identities=21% Similarity=0.256 Sum_probs=34.9
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHH-HHHHHHHhC
Q 023403 40 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDY-ALQAIGRNC 118 (282)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~~~ 118 (282)
.+...++|+++.......+ ..+++|..|.++++ .+..-. ..+...+|+|+.|.+.+. .+..- .+..+. .|
T Consensus 42 d~~d~iDLtdNdl~~l~~l----p~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnN--si~~l~dl~pLa-~~ 112 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNL----PHLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNN--SIQELGDLDPLA-SC 112 (233)
T ss_pred cccceecccccchhhcccC----CCccccceEEecCC-cceeec-cchhhhccccceEEecCc--chhhhhhcchhc-cC
Confidence 3455566665432221121 23456666666542 332111 112223456666666652 23321 222332 35
Q ss_pred CCCCEEEecC
Q 023403 119 NQLQSLNLGW 128 (282)
Q Consensus 119 ~~L~~L~l~~ 128 (282)
|+|++|.+-+
T Consensus 113 p~L~~Ltll~ 122 (233)
T KOG1644|consen 113 PKLEYLTLLG 122 (233)
T ss_pred CccceeeecC
Confidence 6666666655
No 62
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.65 E-value=0.026 Score=27.48 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=15.4
Q ss_pred cCcceEeccCCCCCCHHHHHHHH
Q 023403 214 EGLQSLNISQCTALTPPAVQALC 236 (282)
Q Consensus 214 ~~L~~L~l~~~~~l~~~~~~~l~ 236 (282)
++|++|+|++|. +++.++..++
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHHhC
Confidence 678888888854 8888887765
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.46 E-value=0.012 Score=47.05 Aligned_cols=87 Identities=24% Similarity=0.285 Sum_probs=41.9
Q ss_pred CCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCc--cCHHHHHHHHh
Q 023403 91 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVC--ITDDSVIALAN 168 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--l~~~~l~~l~~ 168 (282)
+|+|+.|.++-.... ...++..++..+|+|++|.+++ +.+.+.....-...+++|..|++.+|.- +++-- ..++.
T Consensus 64 Lp~LkkL~lsdn~~~-~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyr-e~vf~ 140 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRR-VSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYR-EKVFL 140 (260)
T ss_pred cchhhhhcccCCccc-ccccceehhhhCCceeEEeecC-CccccccccchhhhhcchhhhhcccCCccccccHH-HHHHH
Confidence 567777777652111 1223444455567777777776 3444311111122345666777766532 22211 12233
Q ss_pred cCCCCCEEeecC
Q 023403 169 GCPHLRSLGLYY 180 (282)
Q Consensus 169 ~~~~L~~L~l~~ 180 (282)
.+++|++|+-..
T Consensus 141 ll~~L~~LD~~d 152 (260)
T KOG2739|consen 141 LLPSLKYLDGCD 152 (260)
T ss_pred Hhhhhccccccc
Confidence 356666666543
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.36 E-value=0.014 Score=45.08 Aligned_cols=62 Identities=24% Similarity=0.276 Sum_probs=31.4
Q ss_pred hCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCC
Q 023403 117 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 181 (282)
Q Consensus 117 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 181 (282)
..+.|.+|.++. ++++.... .+....|.|..|.++++.-..-..+..+. .||.|++|.+-++
T Consensus 62 ~l~rL~tLll~n-NrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 62 HLPRLHTLLLNN-NRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGN 123 (233)
T ss_pred CccccceEEecC-Ccceeecc-chhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCC
Confidence 345566777765 34553211 12223466777777774222222233333 3677777776664
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.17 E-value=0.059 Score=30.77 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=15.1
Q ss_pred CCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCC
Q 023403 146 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 181 (282)
Q Consensus 146 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 181 (282)
+|++|+++++ .+++ +...+..+++|+.|++++|
T Consensus 2 ~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcc--cCchHhCCCCCCEEEecCC
Confidence 4555555553 4442 2222234555666665554
No 66
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.86 E-value=0.057 Score=47.09 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=23.3
Q ss_pred cCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCC
Q 023403 210 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 210 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~ 257 (282)
...++++++|++++ +.+++..- +....+|+.|++++..
T Consensus 251 ~~~l~~l~~L~~s~-n~i~~i~~---------~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 251 IGNLSNLETLDLSN-NQISSISS---------LGSLTNLRELDLSGNS 288 (394)
T ss_pred hccccccceecccc-cccccccc---------ccccCccCEEeccCcc
Confidence 34447788888888 44543211 3355677888887754
No 67
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.59 E-value=0.028 Score=48.02 Aligned_cols=114 Identities=21% Similarity=0.158 Sum_probs=60.0
Q ss_pred HHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHH
Q 023403 33 EAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQ 112 (282)
Q Consensus 33 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 112 (282)
......+++|..|+++++ .+. ..+.... ....|+.|+++.+ .++. ++........++.+-.++ +.+..-...
T Consensus 428 ~~~l~~l~kLt~L~L~NN-~Ln-~LP~e~~-~lv~Lq~LnlS~N-rFr~--lP~~~y~lq~lEtllas~--nqi~~vd~~ 499 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNN-LLN-DLPEEMG-SLVRLQTLNLSFN-RFRM--LPECLYELQTLETLLASN--NQIGSVDPS 499 (565)
T ss_pred hHHHHhhhcceeeecccc-hhh-hcchhhh-hhhhhheeccccc-cccc--chHHHhhHHHHHHHHhcc--ccccccChH
Confidence 334455678889999875 222 2222232 2566899998874 3321 111111122333333333 223222222
Q ss_pred HHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccC
Q 023403 113 AIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCIT 159 (282)
Q Consensus 113 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~ 159 (282)
.+ .+.++|+.|++..+ ++ +.+......+.+|++|++.++ .+.
T Consensus 500 ~l-~nm~nL~tLDL~nN-dl--q~IPp~LgnmtnL~hLeL~gN-pfr 541 (565)
T KOG0472|consen 500 GL-KNMRNLTTLDLQNN-DL--QQIPPILGNMTNLRHLELDGN-PFR 541 (565)
T ss_pred Hh-hhhhhcceeccCCC-ch--hhCChhhccccceeEEEecCC-ccC
Confidence 22 24677888888763 22 233344557888999999985 454
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.36 E-value=0.13 Score=44.74 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=45.4
Q ss_pred HcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHh
Q 023403 89 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN 168 (282)
Q Consensus 89 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 168 (282)
..+++++.|++++|. +..- -.-.++|++|.+.+|..+.. +... ..+.|+.|++++|..+. .+
T Consensus 49 ~~~~~l~~L~Is~c~--L~sL-----P~LP~sLtsL~Lsnc~nLts--LP~~--LP~nLe~L~Ls~Cs~L~-----sL-- 110 (426)
T PRK15386 49 EEARASGRLYIKDCD--IESL-----PVLPNELTEITIENCNNLTT--LPGS--IPEGLEKLTVCHCPEIS-----GL-- 110 (426)
T ss_pred HHhcCCCEEEeCCCC--Cccc-----CCCCCCCcEEEccCCCCccc--CCch--hhhhhhheEccCccccc-----cc--
Confidence 347889999999874 3321 12234699999988766532 1111 12578899998875553 22
Q ss_pred cCCCCCEEeecC
Q 023403 169 GCPHLRSLGLYY 180 (282)
Q Consensus 169 ~~~~L~~L~l~~ 180 (282)
.+.|+.|++..
T Consensus 111 -P~sLe~L~L~~ 121 (426)
T PRK15386 111 -PESVRSLEIKG 121 (426)
T ss_pred -ccccceEEeCC
Confidence 34688888765
No 69
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.94 E-value=0.18 Score=25.59 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.9
Q ss_pred cCcceEeccCCCCCCHHHHHHHHhhC
Q 023403 214 EGLQSLNISQCTALTPPAVQALCDTF 239 (282)
Q Consensus 214 ~~L~~L~l~~~~~l~~~~~~~l~~~~ 239 (282)
++|++|+|++ +.+++.+...+++.+
T Consensus 2 ~~L~~LdL~~-N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSN-NKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCC-CCCCHHHHHHHHHHh
Confidence 6899999999 789999999988754
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.76 E-value=0.084 Score=23.31 Aligned_cols=15 Identities=33% Similarity=0.266 Sum_probs=8.0
Q ss_pred CCcceeeecCCCCccc
Q 023403 246 SGRHSLVMSGCLNLTS 261 (282)
Q Consensus 246 ~~L~~L~l~~c~~~~~ 261 (282)
++|+.|++++|. +++
T Consensus 1 ~~L~~L~l~~n~-L~~ 15 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTS 15 (17)
T ss_dssp TT-SEEEETSS---SS
T ss_pred CccCEEECCCCC-CCC
Confidence 356777777776 554
No 71
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=89.52 E-value=0.21 Score=43.50 Aligned_cols=36 Identities=28% Similarity=0.248 Sum_probs=23.5
Q ss_pred hcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCC
Q 023403 142 YGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 181 (282)
Q Consensus 142 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 181 (282)
..++.++.|+++++ .+++-. . .....+++.|++++.
T Consensus 252 ~~l~~l~~L~~s~n-~i~~i~--~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 252 GNLSNLETLDLSNN-QISSIS--S-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccccccceeccccc-cccccc--c-ccccCccCEEeccCc
Confidence 35567888888884 554322 2 334678888888875
No 72
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=88.60 E-value=1.1 Score=40.18 Aligned_cols=92 Identities=24% Similarity=0.189 Sum_probs=55.4
Q ss_pred HHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCC--CHHHHHHHHHcCCCCeEEEecCCccccc-
Q 023403 31 AVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSF--SDHALAYLCGFCRKLKILNLCGCVKAAT- 107 (282)
Q Consensus 31 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~- 107 (282)
.+..+....|.+..+.|++|....-..+..+....|+|+.|+|+++... +...+..+ ....|+.|-+.+.+ +.
T Consensus 209 ~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNP--lc~ 284 (585)
T KOG3763|consen 209 VLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNP--LCT 284 (585)
T ss_pred HHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCc--ccc
Confidence 3445555677788888887755555677777777888888888875212 22222222 23567777777732 32
Q ss_pred -----HHHHHHHHHhCCCCCEEEe
Q 023403 108 -----DYALQAIGRNCNQLQSLNL 126 (282)
Q Consensus 108 -----~~~~~~l~~~~~~L~~L~l 126 (282)
.+-..++.+.+|+|..|+-
T Consensus 285 tf~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 285 TFSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred chhhhHHHHHHHHHhcchheeecC
Confidence 2233345556777777664
No 73
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=85.37 E-value=2.5 Score=38.02 Aligned_cols=88 Identities=22% Similarity=0.227 Sum_probs=54.9
Q ss_pred HHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcc
Q 023403 138 MNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQ 217 (282)
Q Consensus 138 ~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 217 (282)
.......|.+..+.++++.-..-+.+..+.+..|+|+.|+|+++..... ...++.+.. +..|+
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k----------------~l~Le 273 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLK----------------GLPLE 273 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhc----------------CCCHH
Confidence 3444456788888888865556667777888888999999988621111 111222211 16688
Q ss_pred eEeccCCCCCCHH-----HHHHHHhhCCCC
Q 023403 218 SLNISQCTALTPP-----AVQALCDTFPAL 242 (282)
Q Consensus 218 ~L~l~~~~~l~~~-----~~~~l~~~~~~l 242 (282)
+|-+.++|-.+.. -+..+.+.+|+|
T Consensus 274 el~l~GNPlc~tf~~~s~yv~~i~~~FPKL 303 (585)
T KOG3763|consen 274 ELVLEGNPLCTTFSDRSEYVSAIRELFPKL 303 (585)
T ss_pred HeeecCCccccchhhhHHHHHHHHHhcchh
Confidence 8888886665533 333456677766
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=84.99 E-value=0.53 Score=22.19 Aligned_cols=15 Identities=47% Similarity=0.516 Sum_probs=11.3
Q ss_pred CcceeeecCCCCccch
Q 023403 247 GRHSLVMSGCLNLTSV 262 (282)
Q Consensus 247 ~L~~L~l~~c~~~~~~ 262 (282)
+|++|++++| .++.+
T Consensus 1 ~L~~Ldls~n-~l~~i 15 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSI 15 (22)
T ss_dssp TESEEEETSS-EESEE
T ss_pred CccEEECCCC-cCEeC
Confidence 4788888888 67753
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=83.21 E-value=0.54 Score=34.33 Aligned_cols=84 Identities=24% Similarity=0.277 Sum_probs=40.5
Q ss_pred CCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCC
Q 023403 93 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH 172 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 172 (282)
.+..+++++|.-..-.+....+. ...+|+..+++++ .+.+ ....+...+|.+++|++.+ +.+++-... +. ..+.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~-~~~el~~i~ls~N-~fk~-fp~kft~kf~t~t~lNl~~-neisdvPeE-~A-am~a 101 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLS-KGYELTKISLSDN-GFKK-FPKKFTIKFPTATTLNLAN-NEISDVPEE-LA-AMPA 101 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHh-CCceEEEEecccc-hhhh-CCHHHhhccchhhhhhcch-hhhhhchHH-Hh-hhHH
Confidence 44455566654211223333332 2344666666652 2221 1122333455667777776 455543322 33 3667
Q ss_pred CCEEeecCCC
Q 023403 173 LRSLGLYYCR 182 (282)
Q Consensus 173 L~~L~l~~~~ 182 (282)
|+.|+++.+.
T Consensus 102 Lr~lNl~~N~ 111 (177)
T KOG4579|consen 102 LRSLNLRFNP 111 (177)
T ss_pred hhhcccccCc
Confidence 7777777654
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=80.70 E-value=0.5 Score=41.60 Aligned_cols=11 Identities=36% Similarity=0.259 Sum_probs=5.9
Q ss_pred CCCCcEEeccC
Q 023403 65 CPNLTRLNISG 75 (282)
Q Consensus 65 ~~~L~~L~l~~ 75 (282)
+++|++|++++
T Consensus 117 ~~~L~~L~ls~ 127 (414)
T KOG0531|consen 117 LVNLQVLDLSF 127 (414)
T ss_pred hhcchheeccc
Confidence 45555555554
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=80.07 E-value=0.9 Score=33.24 Aligned_cols=84 Identities=23% Similarity=0.193 Sum_probs=52.8
Q ss_pred CCCEEEecCCCCCC-HHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcC
Q 023403 120 QLQSLNLGWCEDVG-DVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVK 198 (282)
Q Consensus 120 ~L~~L~l~~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 198 (282)
.+..++++.|.-.. .+.+..+. ....|..++++++ .+.+- -+.+...++.++.|+++++ .+++...+ +...
T Consensus 28 E~h~ldLssc~lm~i~davy~l~-~~~el~~i~ls~N-~fk~f-p~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam--- 99 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLS-KGYELTKISLSDN-GFKKF-PKKFTIKFPTATTLNLANN-EISDVPEE-LAAM--- 99 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHh-CCceEEEEecccc-hhhhC-CHHHhhccchhhhhhcchh-hhhhchHH-Hhhh---
Confidence 46678888874321 22333333 4467888899994 55421 2344445678999999995 57765444 5443
Q ss_pred CCCcchhcccccCcccCcceEeccCCCC
Q 023403 199 NKPGIWESMKGRYDEEGLQSLNISQCTA 226 (282)
Q Consensus 199 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 226 (282)
+.|+.|+++.++-
T Consensus 100 ---------------~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 100 ---------------PALRSLNLRFNPL 112 (177)
T ss_pred ---------------HHhhhcccccCcc
Confidence 8888888888543
No 78
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=76.62 E-value=1.4 Score=38.90 Aligned_cols=104 Identities=23% Similarity=0.197 Sum_probs=63.1
Q ss_pred hCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcH-HHHHHHHhc
Q 023403 117 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITD-RAIYSLAQS 195 (282)
Q Consensus 117 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~ 195 (282)
.+.+++.|++.++ .+.. +......+++|+.|+++++ .++. +..+. .++.|+.|++.++. ++. ..+..
T Consensus 93 ~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~N-~I~~--i~~l~-~l~~L~~L~l~~N~-i~~~~~~~~---- 160 (414)
T KOG0531|consen 93 KLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSFN-KITK--LEGLS-TLTLLKELNLSGNL-ISDISGLES---- 160 (414)
T ss_pred cccceeeeecccc-chhh--cccchhhhhcchheecccc-cccc--ccchh-hccchhhheeccCc-chhccCCcc----
Confidence 4678888888873 4432 2232346788999999994 5543 22222 25669999998864 321 11111
Q ss_pred CcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCC
Q 023403 196 GVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~ 257 (282)
++.|+.++++++ .+....-. + +..+++++.+.+++..
T Consensus 161 -----------------l~~L~~l~l~~n-~i~~ie~~------~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 161 -----------------LKSLKLLDLSYN-RIVDIEND------E-LSELISLEELDLGGNS 197 (414)
T ss_pred -----------------chhhhcccCCcc-hhhhhhhh------h-hhhccchHHHhccCCc
Confidence 278899999884 34322111 1 3466777888888776
No 79
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=69.19 E-value=4.8 Score=19.89 Aligned_cols=8 Identities=38% Similarity=0.575 Sum_probs=3.8
Q ss_pred CcEEEecC
Q 023403 147 LRSLDLCG 154 (282)
Q Consensus 147 L~~L~l~~ 154 (282)
|++|.+.+
T Consensus 2 LKtL~L~~ 9 (26)
T PF07723_consen 2 LKTLHLDS 9 (26)
T ss_pred CeEEEeeE
Confidence 44445544
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=42.66 E-value=22 Score=17.09 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=6.4
Q ss_pred cCcceEeccC
Q 023403 214 EGLQSLNISQ 223 (282)
Q Consensus 214 ~~L~~L~l~~ 223 (282)
++|++|++++
T Consensus 2 ~~L~~L~L~~ 11 (26)
T smart00370 2 PNLRELDLSN 11 (26)
T ss_pred CCCCEEECCC
Confidence 4566666666
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=42.66 E-value=22 Score=17.09 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=6.4
Q ss_pred cCcceEeccC
Q 023403 214 EGLQSLNISQ 223 (282)
Q Consensus 214 ~~L~~L~l~~ 223 (282)
++|++|++++
T Consensus 2 ~~L~~L~L~~ 11 (26)
T smart00369 2 PNLRELDLSN 11 (26)
T ss_pred CCCCEEECCC
Confidence 4566666666
No 82
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=38.81 E-value=1e+02 Score=26.27 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=13.5
Q ss_pred cCcceEeccCCCCCCHHHHHHHHhhC
Q 023403 214 EGLQSLNISQCTALTPPAVQALCDTF 239 (282)
Q Consensus 214 ~~L~~L~l~~~~~l~~~~~~~l~~~~ 239 (282)
+.|++|++.+ +.|+..++-++..++
T Consensus 255 ~sl~slnves-nFItg~gi~a~~~al 279 (353)
T KOG3735|consen 255 KSLTSLNVES-NFITGLGIMALLRAL 279 (353)
T ss_pred chhhheeccc-cccccHHHHHHHHHH
Confidence 5555555555 555555555554443
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=30.62 E-value=45 Score=16.44 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=9.3
Q ss_pred cCcceEeccCCCCC
Q 023403 214 EGLQSLNISQCTAL 227 (282)
Q Consensus 214 ~~L~~L~l~~~~~l 227 (282)
.+|+.|+++. +.|
T Consensus 2 ~~L~~L~L~~-NkI 14 (26)
T smart00365 2 TNLEELDLSQ-NKI 14 (26)
T ss_pred CccCEEECCC-Ccc
Confidence 5788888887 444
No 84
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=28.30 E-value=6.1 Score=35.99 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=15.6
Q ss_pred CCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCC
Q 023403 121 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGC 155 (282)
Q Consensus 121 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 155 (282)
|..|+++. ++++...+. +..+..|++|.|.++
T Consensus 213 Li~lDfSc-Nkis~iPv~--fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 213 LIRLDFSC-NKISYLPVD--FRKMRHLQVLQLENN 244 (722)
T ss_pred eeeeeccc-Cceeecchh--hhhhhhheeeeeccC
Confidence 56666654 444432211 123455666666664
No 85
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=26.22 E-value=31 Score=17.12 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=9.1
Q ss_pred HHccCCCCccEEEcc
Q 023403 7 SLAPKLTKLQTLVLR 21 (282)
Q Consensus 7 ~~~~~~~~L~~L~l~ 21 (282)
.++..+|+|+.||..
T Consensus 7 ~Vi~~LPqL~~LD~~ 21 (26)
T smart00446 7 KVIRLLPQLRKLDXX 21 (26)
T ss_pred HHHHHCCccceeccc
Confidence 455566667766654
No 86
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=22.87 E-value=2.9e+02 Score=23.75 Aligned_cols=97 Identities=20% Similarity=0.267 Sum_probs=48.2
Q ss_pred ChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCC---CCeEEEecCCcccccH---HHHHHHHHhCCCCCEEEec
Q 023403 54 SDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR---KLKILNLCGCVKAATD---YALQAIGRNCNQLQSLNLG 127 (282)
Q Consensus 54 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~~---~~~~~l~~~~~~L~~L~l~ 127 (282)
.+..+..+-..-|.++..++++...++...+..+...+. ..+.+.+.+- ..++ .++......++.|+.|.+.
T Consensus 186 ~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t--r~~d~vA~a~a~ml~~n~sl~slnve 263 (353)
T KOG3735|consen 186 VESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT--RSSDPVAFAIAEMLKENKSLTSLNVE 263 (353)
T ss_pred HHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc--cCCchhHHHHHHHHhhcchhhheecc
Confidence 334444444444667777776655665555544443332 3333344331 1222 2222233446677777777
Q ss_pred CCCCCCHHHHHHHHhcC---CCCcEEEec
Q 023403 128 WCEDVGDVGVMNLAYGC---PDLRSLDLC 153 (282)
Q Consensus 128 ~~~~~~~~~~~~l~~~~---~~L~~L~l~ 153 (282)
+ +-+++.++.++...+ ..|.++.+.
T Consensus 264 s-nFItg~gi~a~~~al~~n~tl~el~~d 291 (353)
T KOG3735|consen 264 S-NFITGLGIMALLRALQSNKSLTELKND 291 (353)
T ss_pred c-cccccHHHHHHHHHHhccchhhHhhhh
Confidence 6 346666666655432 344444443
No 87
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=22.61 E-value=2.9e+02 Score=19.58 Aligned_cols=45 Identities=16% Similarity=0.369 Sum_probs=20.8
Q ss_pred CCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHh
Q 023403 144 CPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQ 194 (282)
Q Consensus 144 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 194 (282)
+.+.+.+.+.+. ......+ +.+.++..+.+.. ..++...+..+.+
T Consensus 67 Wk~~k~~~i~~~-~~~~~~l----~~f~h~~~~~i~~-~~~t~~di~~l~~ 111 (142)
T PF01827_consen 67 WKNAKEFKIGGF-VIDSFPL----ENFSHFEKFNIHF-ESITVEDIWKLKE 111 (142)
T ss_pred hceeheeEeccc-ccccHHH----HhCCCccEEEEEE-EeCCHHHHHHHHH
Confidence 455666666552 2221112 2344566666633 4455544444433
Done!