Query 023403
Match_columns 282
No_of_seqs 132 out of 2131
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 06:12:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.9 2.6E-21 9E-26 175.2 24.2 239 4-274 284-540 (592)
2 2ast_B S-phase kinase-associat 99.9 3.3E-21 1.1E-25 162.6 19.7 189 39-256 92-282 (336)
3 2p1m_B Transport inhibitor res 99.9 9.2E-21 3.2E-25 171.6 22.0 226 5-264 281-523 (594)
4 2ast_B S-phase kinase-associat 99.9 1.8E-20 6.2E-25 158.1 17.7 220 10-265 90-311 (336)
5 2p1m_B Transport inhibitor res 99.8 7.1E-19 2.4E-23 159.2 25.1 255 6-275 177-509 (594)
6 3ogk_B Coronatine-insensitive 99.8 1.7E-19 5.7E-24 163.4 19.6 214 32-275 285-516 (592)
7 2ca6_A RAN GTPase-activating p 99.8 1.1E-16 3.9E-21 137.4 22.2 123 117-257 185-314 (386)
8 2ca6_A RAN GTPase-activating p 99.7 2.4E-16 8.1E-21 135.5 21.9 231 6-261 25-288 (386)
9 1z7x_W Ribonuclease inhibitor; 99.7 7.7E-17 2.6E-21 141.5 19.1 176 64-263 225-414 (461)
10 1z7x_W Ribonuclease inhibitor; 99.7 2.3E-16 8E-21 138.4 21.1 72 118-192 169-247 (461)
11 3goz_A Leucine-rich repeat-con 99.7 8.6E-15 2.9E-19 124.7 20.7 177 3-188 12-212 (362)
12 3goz_A Leucine-rich repeat-con 99.6 1.1E-15 3.8E-20 130.1 12.7 226 6-257 43-295 (362)
13 3un9_A NLR family member X1; l 99.5 9.1E-13 3.1E-17 112.3 17.9 177 39-237 71-261 (372)
14 3un9_A NLR family member X1; l 99.5 2.8E-12 9.5E-17 109.3 20.4 175 12-195 71-262 (372)
15 4fmz_A Internalin; leucine ric 99.5 7.3E-14 2.5E-18 118.0 10.3 44 210-262 283-326 (347)
16 3e4g_A ATP synthase subunit S, 99.4 1.2E-13 4E-18 104.0 6.8 103 120-242 62-169 (176)
17 3e4g_A ATP synthase subunit S, 99.4 1.4E-13 4.9E-18 103.5 6.2 107 145-274 61-169 (176)
18 4fmz_A Internalin; leucine ric 99.4 1.2E-12 4.1E-17 110.6 11.4 126 90-257 219-344 (347)
19 3v47_A TOLL-like receptor 5B a 99.4 1.4E-14 5E-19 126.8 -2.5 113 9-128 50-163 (455)
20 4fcg_A Uncharacterized protein 99.4 3.9E-15 1.3E-19 125.0 -6.2 217 11-275 79-304 (328)
21 3v47_A TOLL-like receptor 5B a 99.3 4.4E-14 1.5E-18 123.7 -1.9 89 9-102 75-164 (455)
22 1ozn_A Reticulon 4 receptor; N 99.3 1.3E-14 4.4E-19 119.4 -7.1 208 12-259 31-238 (285)
23 1wwl_A Monocyte differentiatio 99.3 5E-13 1.7E-17 111.4 1.8 34 214-257 274-307 (312)
24 1h6u_A Internalin H; cell adhe 99.3 1.5E-12 5E-17 108.4 4.4 190 11-257 39-228 (308)
25 1o6v_A Internalin A; bacterial 99.3 8.6E-12 2.9E-16 109.6 8.3 148 9-182 173-320 (466)
26 2z80_A TOLL-like receptor 2, v 99.3 8.4E-13 2.9E-17 111.9 1.3 162 8-181 71-232 (353)
27 2z66_A Variable lymphocyte rec 99.2 1.2E-14 4.3E-19 120.7 -10.7 156 13-181 28-185 (306)
28 3o53_A Protein LRIM1, AGAP0063 99.2 4.8E-13 1.6E-17 111.7 -1.6 155 5-182 26-180 (317)
29 2z80_A TOLL-like receptor 2, v 99.2 3.4E-13 1.1E-17 114.3 -2.9 158 13-182 52-209 (353)
30 1ozn_A Reticulon 4 receptor; N 99.2 3.2E-14 1.1E-18 117.0 -9.0 196 7-234 50-245 (285)
31 4fcg_A Uncharacterized protein 99.2 1.1E-13 3.8E-18 116.2 -6.1 202 9-255 100-310 (328)
32 2id5_A Lingo-1, leucine rich r 99.2 1E-13 3.4E-18 122.3 -6.7 15 243-257 269-283 (477)
33 2z66_A Variable lymphocyte rec 99.2 7.3E-15 2.5E-19 122.1 -13.3 213 8-258 47-260 (306)
34 1o6v_A Internalin A; bacterial 99.2 1.3E-11 4.5E-16 108.5 6.7 192 9-257 195-386 (466)
35 3zyi_A Leucine-rich repeat-con 99.2 7.9E-14 2.7E-18 122.2 -8.0 154 13-181 75-228 (452)
36 2id5_A Lingo-1, leucine rich r 99.2 2.8E-13 9.4E-18 119.5 -5.3 135 8-154 51-185 (477)
37 3t6q_A CD180 antigen; protein- 99.2 6.8E-14 2.3E-18 127.0 -9.6 162 9-181 297-459 (606)
38 3oja_A Leucine-rich immune mol 99.2 1.1E-12 3.8E-17 115.9 -1.7 155 5-182 26-180 (487)
39 3zyj_A Leucine-rich repeat-con 99.2 7.2E-14 2.5E-18 122.0 -9.3 154 13-181 64-217 (440)
40 3zyj_A Leucine-rich repeat-con 99.2 7.3E-14 2.5E-18 122.0 -9.2 209 7-257 82-290 (440)
41 2z81_A CD282 antigen, TOLL-lik 99.2 7.5E-12 2.6E-16 112.1 3.4 11 213-223 360-370 (549)
42 2z81_A CD282 antigen, TOLL-lik 99.2 5.9E-11 2E-15 106.3 8.9 175 38-259 332-510 (549)
43 3o6n_A APL1; leucine-rich repe 99.2 1.3E-12 4.6E-17 112.1 -1.8 56 120-181 227-282 (390)
44 3zyi_A Leucine-rich repeat-con 99.2 1.1E-13 3.6E-18 121.4 -8.9 209 7-257 93-301 (452)
45 3t6q_A CD180 antigen; protein- 99.2 1.1E-13 3.6E-18 125.7 -9.8 229 8-257 273-511 (606)
46 4glp_A Monocyte differentiatio 99.2 1.1E-11 3.7E-16 103.2 3.0 211 14-262 65-287 (310)
47 1ogq_A PGIP-2, polygalacturona 99.1 1.6E-14 5.3E-19 120.6 -14.3 209 5-257 68-279 (313)
48 4glp_A Monocyte differentiatio 99.1 1.5E-12 5E-17 108.4 -2.5 203 12-257 90-305 (310)
49 1wwl_A Monocyte differentiatio 99.1 4.9E-12 1.7E-16 105.4 0.4 205 11-228 93-309 (312)
50 2ra8_A Uncharacterized protein 99.1 2.2E-10 7.5E-15 97.0 10.5 213 13-257 107-341 (362)
51 1xku_A Decorin; proteoglycan, 99.1 3.6E-12 1.2E-16 107.0 -0.7 39 213-262 239-278 (330)
52 3rgz_A Protein brassinosteroid 99.1 7.6E-13 2.6E-17 123.3 -5.4 135 8-155 121-257 (768)
53 3rgz_A Protein brassinosteroid 99.1 1.6E-13 5.3E-18 128.0 -10.5 61 12-76 293-353 (768)
54 3oja_B Anopheles plasmodium-re 99.1 3.9E-12 1.3E-16 115.3 -1.3 56 120-181 233-288 (597)
55 1io0_A Tropomodulin; LRR prote 99.1 4.5E-09 1.6E-13 80.5 16.1 88 88-178 32-128 (185)
56 2z63_A TOLL-like receptor 4, v 99.1 1.1E-13 3.9E-18 124.4 -11.7 183 39-257 346-529 (570)
57 1h6u_A Internalin H; cell adhe 99.1 3.3E-11 1.1E-15 100.2 4.0 170 9-225 59-228 (308)
58 1ogq_A PGIP-2, polygalacturona 99.1 2E-14 6.8E-19 119.9 -15.8 155 13-181 50-207 (313)
59 3vq2_A TLR4, TOLL-like recepto 99.1 2.6E-13 9E-18 123.1 -10.7 62 117-181 422-483 (606)
60 4ecn_A Leucine-rich repeat pro 99.1 4.8E-12 1.7E-16 118.5 -2.4 137 5-155 481-629 (876)
61 3o53_A Protein LRIM1, AGAP0063 99.1 3.8E-12 1.3E-16 106.3 -3.1 151 6-181 51-201 (317)
62 3o6n_A APL1; leucine-rich repe 99.1 1.7E-12 5.9E-17 111.4 -5.6 110 9-128 65-174 (390)
63 3oja_A Leucine-rich immune mol 99.1 2.3E-12 7.8E-17 113.9 -5.1 200 6-259 51-250 (487)
64 2ra8_A Uncharacterized protein 99.1 5.2E-10 1.8E-14 94.7 9.5 178 9-195 135-330 (362)
65 3bz5_A Internalin-J, INLJ; leu 99.1 8.5E-11 2.9E-15 103.0 4.8 119 11-155 40-158 (457)
66 4ecn_A Leucine-rich repeat pro 99.1 3.6E-12 1.2E-16 119.3 -4.2 232 5-261 440-711 (876)
67 1xku_A Decorin; proteoglycan, 99.1 4.8E-12 1.6E-16 106.2 -3.2 229 8-258 71-305 (330)
68 3vq2_A TLR4, TOLL-like recepto 99.1 5.3E-13 1.8E-17 121.1 -9.7 211 10-260 347-559 (606)
69 3rfs_A Internalin B, repeat mo 99.0 2.5E-12 8.7E-17 105.0 -5.3 153 11-181 39-191 (272)
70 2z62_A TOLL-like receptor 4, v 99.0 2.5E-13 8.4E-18 111.2 -11.6 203 13-257 28-235 (276)
71 3oja_B Anopheles plasmodium-re 99.0 2.8E-12 9.5E-17 116.2 -6.0 13 245-257 300-312 (597)
72 4eco_A Uncharacterized protein 99.0 8.4E-13 2.9E-17 120.5 -9.6 165 5-182 198-388 (636)
73 1ziw_A TOLL-like receptor 3; i 99.0 1.7E-12 5.9E-17 119.3 -8.2 42 212-260 582-623 (680)
74 1h6t_A Internalin B; cell adhe 99.0 1.6E-10 5.4E-15 95.2 4.4 167 39-257 45-211 (291)
75 4ezg_A Putative uncharacterize 99.0 9.7E-11 3.3E-15 90.8 2.5 150 65-257 43-192 (197)
76 4eco_A Uncharacterized protein 99.0 1.9E-12 6.7E-17 118.1 -8.4 162 5-182 239-413 (636)
77 2z7x_B TOLL-like receptor 1, v 99.0 2.1E-10 7.2E-15 102.1 4.7 87 90-181 322-409 (520)
78 2z7x_B TOLL-like receptor 1, v 99.0 8E-11 2.7E-15 104.8 1.7 166 38-235 322-489 (520)
79 1h6t_A Internalin B; cell adhe 99.0 9.7E-11 3.3E-15 96.5 1.8 167 11-224 44-210 (291)
80 3bz5_A Internalin-J, INLJ; leu 99.0 8.5E-11 2.9E-15 103.0 1.5 189 9-262 60-248 (457)
81 4ezg_A Putative uncharacterize 99.0 1.4E-10 4.7E-15 89.9 2.1 151 11-182 42-192 (197)
82 2z63_A TOLL-like receptor 4, v 99.0 1.2E-12 4.2E-17 117.7 -11.3 55 210-274 466-520 (570)
83 1ziw_A TOLL-like receptor 3; i 99.0 3.2E-11 1.1E-15 110.9 -2.4 36 214-257 248-283 (680)
84 3rfs_A Internalin B, repeat mo 98.9 2.2E-11 7.7E-16 99.3 -3.3 176 39-257 40-216 (272)
85 1m9s_A Internalin B; cell inva 98.9 4.1E-10 1.4E-14 101.8 4.1 101 64-181 63-163 (605)
86 1io0_A Tropomodulin; LRR prote 98.9 4E-08 1.4E-12 75.2 13.9 129 55-188 25-167 (185)
87 1p9a_G Platelet glycoprotein I 98.9 1.8E-11 6.2E-16 100.8 -5.4 200 9-257 6-206 (290)
88 2ft3_A Biglycan; proteoglycan, 98.9 1.2E-11 4.1E-16 103.9 -6.8 104 13-129 54-157 (332)
89 3j0a_A TOLL-like receptor 5; m 98.9 9.6E-12 3.3E-16 117.1 -8.3 86 38-128 71-157 (844)
90 1m9s_A Internalin B; cell inva 98.9 3.9E-10 1.3E-14 101.9 2.4 168 11-225 41-208 (605)
91 2z62_A TOLL-like receptor 4, v 98.9 3.8E-11 1.3E-15 98.1 -4.5 195 40-274 28-226 (276)
92 2o6q_A Variable lymphocyte rec 98.9 8.6E-12 2.9E-16 101.7 -8.5 131 40-181 37-167 (270)
93 2ft3_A Biglycan; proteoglycan, 98.9 6.4E-12 2.2E-16 105.5 -9.6 86 8-103 73-158 (332)
94 2je0_A Acidic leucine-rich nuc 98.8 6.4E-10 2.2E-14 82.0 1.8 130 40-179 17-148 (149)
95 2je0_A Acidic leucine-rich nuc 98.8 7.1E-10 2.4E-14 81.8 1.6 134 10-154 14-149 (149)
96 2xwt_C Thyrotropin receptor; s 98.8 5E-12 1.7E-16 101.1 -11.4 130 14-154 32-165 (239)
97 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 1.8E-09 6.1E-14 97.1 3.4 37 212-258 471-509 (562)
98 3j0a_A TOLL-like receptor 5; m 98.8 1.3E-11 4.6E-16 116.1 -11.1 91 7-102 67-158 (844)
99 2o6q_A Variable lymphocyte rec 98.8 1.9E-11 6.4E-16 99.6 -9.1 181 13-226 37-217 (270)
100 2ell_A Acidic leucine-rich nuc 98.7 5.4E-10 1.8E-14 84.2 -2.4 134 39-182 23-158 (168)
101 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 1.3E-09 4.4E-14 98.0 -1.3 166 38-235 351-518 (562)
102 2ell_A Acidic leucine-rich nuc 98.7 8.2E-10 2.8E-14 83.2 -2.6 132 92-257 24-158 (168)
103 3g06_A SSPH2 (leucine-rich rep 98.6 8.2E-09 2.8E-13 93.5 2.3 50 13-75 61-110 (622)
104 1p9a_G Platelet glycoprotein I 98.6 3.2E-10 1.1E-14 93.3 -6.7 184 12-232 30-213 (290)
105 3m19_A Variable lymphocyte rec 98.6 6.2E-10 2.1E-14 89.6 -6.0 178 13-226 14-191 (251)
106 1xeu_A Internalin C; cellular 98.6 9.7E-09 3.3E-13 83.2 1.1 55 39-101 40-94 (263)
107 1xeu_A Internalin C; cellular 98.6 1.1E-08 3.6E-13 83.0 1.2 146 10-182 38-183 (263)
108 3m19_A Variable lymphocyte rec 98.6 6.9E-10 2.4E-14 89.3 -6.2 156 13-182 35-190 (251)
109 1pgv_A TMD-1, tropomodulin TMD 98.5 1.1E-06 3.8E-11 67.2 11.8 125 82-223 31-166 (197)
110 3g06_A SSPH2 (leucine-rich rep 98.5 7E-08 2.4E-12 87.4 3.8 35 213-257 260-295 (622)
111 2xwt_C Thyrotropin receptor; s 98.4 1.8E-10 6.1E-15 92.0 -12.6 186 40-263 31-221 (239)
112 1pgv_A TMD-1, tropomodulin TMD 98.4 4.2E-06 1.4E-10 64.0 11.8 126 53-181 28-167 (197)
113 4ay9_X Follicle-stimulating ho 98.4 1.3E-10 4.4E-15 98.3 -15.1 161 13-184 30-190 (350)
114 4g8a_A TOLL-like receptor 4; l 98.3 1.3E-08 4.3E-13 92.4 -4.5 131 41-181 53-183 (635)
115 1jl5_A Outer protein YOPM; leu 98.3 1.5E-07 5.2E-12 82.3 2.4 33 13-50 131-163 (454)
116 1a9n_A U2A', U2A'; complex (nu 98.3 4.2E-08 1.4E-12 74.3 -1.3 34 65-101 18-51 (176)
117 3cvr_A Invasion plasmid antige 98.3 1.6E-07 5.5E-12 84.1 2.0 133 13-182 59-191 (571)
118 1jl5_A Outer protein YOPM; leu 98.3 5E-07 1.7E-11 79.0 5.0 76 12-102 172-247 (454)
119 4g8a_A TOLL-like receptor 4; l 98.3 8.5E-10 2.9E-14 100.2 -13.3 134 91-257 444-578 (635)
120 1a9n_A U2A', U2A'; complex (nu 98.3 1.1E-07 3.7E-12 72.1 0.2 88 90-182 62-151 (176)
121 1dce_A Protein (RAB geranylger 98.2 6.4E-09 2.2E-13 93.4 -8.8 103 120-257 442-544 (567)
122 1ds9_A Outer arm dynein; leuci 98.2 1.7E-07 5.8E-12 72.4 0.1 127 37-177 45-180 (198)
123 2o6s_A Variable lymphocyte rec 98.2 7.5E-09 2.6E-13 80.7 -7.7 132 39-181 27-158 (208)
124 2xot_A Amphoterin-induced prot 98.2 1.3E-08 4.5E-13 86.3 -6.8 165 13-189 39-207 (361)
125 2xot_A Amphoterin-induced prot 98.2 3E-08 1E-12 84.1 -5.2 166 40-233 39-208 (361)
126 2v70_A SLIT-2, SLIT homolog 2 98.2 2.9E-08 9.8E-13 78.2 -5.5 153 15-183 13-165 (220)
127 2v70_A SLIT-2, SLIT homolog 2 98.1 3E-08 1E-12 78.0 -5.9 163 42-236 13-175 (220)
128 1ds9_A Outer arm dynein; leuci 98.1 7.8E-08 2.7E-12 74.3 -3.9 129 8-151 43-180 (198)
129 2v9t_B SLIT homolog 2 protein 98.1 4.4E-08 1.5E-12 77.1 -5.5 143 66-236 32-174 (220)
130 2o6s_A Variable lymphocyte rec 98.1 7E-08 2.4E-12 75.1 -4.3 148 12-180 27-174 (208)
131 3e6j_A Variable lymphocyte rec 98.1 1.1E-07 3.8E-12 75.2 -3.2 131 40-182 40-170 (229)
132 3e6j_A Variable lymphocyte rec 98.1 7.7E-08 2.6E-12 76.2 -4.2 132 12-156 39-170 (229)
133 2v9t_B SLIT homolog 2 protein 98.1 4.1E-08 1.4E-12 77.3 -5.8 133 40-183 32-164 (220)
134 1dce_A Protein (RAB geranylger 98.1 1.5E-07 5.2E-12 84.4 -3.4 125 40-178 441-567 (567)
135 3cvr_A Invasion plasmid antige 98.0 6.8E-07 2.3E-11 80.1 -0.1 170 12-237 79-252 (571)
136 4ay9_X Follicle-stimulating ho 98.0 3.5E-09 1.2E-13 89.4 -14.7 206 8-254 49-254 (350)
137 3sb4_A Hypothetical leucine ri 97.9 1.5E-07 5.3E-12 78.6 -6.9 110 120-263 203-313 (329)
138 3rw6_A Nuclear RNA export fact 97.7 1.7E-05 6E-10 63.8 3.0 38 37-75 167-205 (267)
139 3sb4_A Hypothetical leucine ri 97.6 3.2E-06 1.1E-10 70.5 -2.4 81 145-255 202-283 (329)
140 1w8a_A SLIT protein; signaling 97.5 1.4E-06 4.7E-11 66.9 -5.5 128 15-156 10-137 (192)
141 1w8a_A SLIT protein; signaling 97.5 1.4E-06 4.7E-11 66.9 -5.5 119 92-235 29-147 (192)
142 2wfh_A SLIT homolog 2 protein 97.5 5.7E-06 2E-10 63.5 -2.2 119 91-236 30-148 (193)
143 2o6r_A Variable lymphocyte rec 97.4 6.4E-06 2.2E-10 62.2 -3.1 128 14-156 8-135 (177)
144 2wfh_A SLIT homolog 2 protein 97.4 5.8E-06 2E-10 63.5 -3.4 126 43-183 13-138 (193)
145 2o6r_A Variable lymphocyte rec 97.3 9.1E-06 3.1E-10 61.3 -3.3 112 91-228 27-138 (177)
146 4b8c_D Glucose-repressible alc 97.3 1.7E-05 5.9E-10 73.3 -2.2 111 61-185 219-329 (727)
147 4b8c_D Glucose-repressible alc 97.2 3.8E-05 1.3E-09 71.0 -0.8 13 11-23 222-234 (727)
148 3rw6_A Nuclear RNA export fact 96.9 0.0006 2.1E-08 54.8 3.9 90 4-98 161-257 (267)
149 3g39_A Variable lymphocyte rec 96.5 0.00017 5.8E-09 53.9 -2.3 86 118-226 29-114 (170)
150 2r9u_A Variable lymphocyte rec 96.4 0.0002 7E-09 53.7 -2.3 85 119-226 33-117 (174)
151 3g39_A Variable lymphocyte rec 96.3 0.00031 1.1E-08 52.4 -1.8 103 14-129 10-112 (170)
152 2r9u_A Variable lymphocyte rec 96.2 0.00032 1.1E-08 52.7 -2.0 83 40-129 33-115 (174)
153 4fdw_A Leucine rich hypothetic 95.5 0.00019 6.5E-09 61.5 -6.7 100 14-128 136-235 (401)
154 2ifg_A High affinity nerve gro 95.1 0.0012 4E-08 55.2 -3.2 11 91-101 79-89 (347)
155 4fdw_A Leucine rich hypothetic 94.6 0.00037 1.3E-08 59.7 -7.4 14 242-256 342-355 (401)
156 2ifg_A High affinity nerve gro 93.9 0.0036 1.2E-07 52.2 -2.8 86 89-182 28-114 (347)
157 4fs7_A Uncharacterized protein 90.8 0.0014 4.7E-08 55.9 -9.5 12 243-254 363-374 (394)
158 4gt6_A Cell surface protein; l 88.6 0.12 4.2E-06 43.7 1.1 123 37-180 262-387 (394)
159 4gt6_A Cell surface protein; l 62.2 6.3 0.00022 33.0 3.7 102 9-128 284-387 (394)
160 3rfe_A Platelet glycoprotein I 60.4 3.1 0.00011 28.9 1.2 37 214-258 31-67 (130)
161 4h09_A Hypothetical leucine ri 58.9 0.87 3E-05 38.1 -2.3 127 9-154 213-342 (379)
162 3rfe_A Platelet glycoprotein I 52.3 5.2 0.00018 27.7 1.3 34 41-76 32-65 (130)
163 4h09_A Hypothetical leucine ri 36.9 12 0.00041 30.9 1.4 12 212-223 284-295 (379)
164 4fs7_A Uncharacterized protein 26.6 11 0.00036 31.6 -0.7 100 8-124 292-393 (394)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=2.6e-21 Score=175.20 Aligned_cols=239 Identities=23% Similarity=0.285 Sum_probs=194.1
Q ss_pred hHHHHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccC--------
Q 023403 4 LVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISG-------- 75 (282)
Q Consensus 4 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-------- 75 (282)
.++.++..+++|++|+++++ .+++..+..+...+++|++|++++ .+.+..+..+...|++|++|++.+
T Consensus 284 ~l~~~~~~~~~L~~L~Ls~~--~l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 284 EMPILFPFAAQIRKLDLLYA--LLETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp TGGGGGGGGGGCCEEEETTC--CCCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred HHHHHHhhcCCCcEEecCCC--cCCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccc
Confidence 35566778899999999986 377777777778899999999994 467788888888899999999994
Q ss_pred --CCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEec---CCCCCCH----HHHHHHHhcCCC
Q 023403 76 --CTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLG---WCEDVGD----VGVMNLAYGCPD 146 (282)
Q Consensus 76 --~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~---~~~~~~~----~~~~~l~~~~~~ 146 (282)
|+.++...+..+...+++|+.|++.. +.+++..+..+...+++|++|++. .|+.+++ .++..+...+++
T Consensus 360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~--~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~ 437 (592)
T 3ogk_B 360 DEEGLVSQRGLIALAQGCQELEYMAVYV--SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK 437 (592)
T ss_dssp STTCCCCHHHHHHHHHHCTTCSEEEEEE--SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT
T ss_pred cccCccCHHHHHHHHhhCccCeEEEeec--CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC
Confidence 78888888888777899999999954 348888888888889999999997 3556665 467777778999
Q ss_pred CcEEEecCCC-ccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCC
Q 023403 147 LRSLDLCGCV-CITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT 225 (282)
Q Consensus 147 L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 225 (282)
|++|++++|. .+++..+..+.+.+++|++|++++| .+++.++..+.... ++|++|++++|+
T Consensus 438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~-----------------~~L~~L~l~~n~ 499 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGC-----------------PNLQKLEMRGCC 499 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCC-----------------TTCCEEEEESCC
T ss_pred CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcC-----------------cccCeeeccCCC
Confidence 9999998764 4888888888888999999999987 48887777775543 899999999987
Q ss_pred CCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccchhhccCCCCcCCc
Q 023403 226 ALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTA 274 (282)
Q Consensus 226 ~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 274 (282)
+++.++..+.. .+++|++|++++|. +++..+.......|.+
T Consensus 500 -l~~~~~~~~~~------~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 500 -FSERAIAAAVT------KLPSLRYLWVQGYR-ASMTGQDLMQMARPYW 540 (592)
T ss_dssp -CBHHHHHHHHH------HCSSCCEEEEESCB-CCTTCTTGGGGCCTTE
T ss_pred -CcHHHHHHHHH------hcCccCeeECcCCc-CCHHHHHHHHHhCCCc
Confidence 89988888876 45667999999999 8887665555555543
No 2
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=3.3e-21 Score=162.57 Aligned_cols=189 Identities=26% Similarity=0.434 Sum_probs=111.5
Q ss_pred CCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhC
Q 023403 39 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 118 (282)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 118 (282)
+++|++|++++| .+++..+...+..+++|++|++++| .+++.....+. .+++|+.|++++|. .+++..+..+...+
T Consensus 92 ~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~-~~~~L~~L~L~~~~-~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 92 PFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLA-KNSNLVRLNLSGCS-GFSEFALQTLLSSC 167 (336)
T ss_dssp CBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHT-TCTTCSEEECTTCB-SCCHHHHHHHHHHC
T ss_pred CCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHh-cCCCCCEEECCCCC-CCCHHHHHHHHhcC
Confidence 356666666665 3555555555556677777777664 45544444443 36677777776652 25555555555566
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhcCC-CCcEEEecCCC-ccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcC
Q 023403 119 NQLQSLNLGWCEDVGDVGVMNLAYGCP-DLRSLDLCGCV-CITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSG 196 (282)
Q Consensus 119 ~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 196 (282)
++|++|++++|..+++.++......++ +|++|++++|. .+++..+......+++|++|++++|..+++.....+..
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-- 245 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-- 245 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG--
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC--
Confidence 677777776654566655555555566 67777777654 46666666565566777777777665455443333322
Q ss_pred cCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCC
Q 023403 197 VKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGC 256 (282)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c 256 (282)
+++|++|++++|..+++.++..+ ..+++|+.|+++||
T Consensus 246 ----------------l~~L~~L~l~~~~~~~~~~~~~l-------~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 246 ----------------LNYLQHLSLSRCYDIIPETLLEL-------GEIPTLKTLQVFGI 282 (336)
T ss_dssp ----------------CTTCCEEECTTCTTCCGGGGGGG-------GGCTTCCEEECTTS
T ss_pred ----------------CCCCCEeeCCCCCCCCHHHHHHH-------hcCCCCCEEeccCc
Confidence 26666777766665655544332 24556666666666
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=9.2e-21 Score=171.63 Aligned_cols=226 Identities=23% Similarity=0.316 Sum_probs=165.9
Q ss_pred HHHHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEec--------cCC
Q 023403 5 VLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNI--------SGC 76 (282)
Q Consensus 5 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l--------~~~ 76 (282)
+..++..+++|+.|+++++ .+++..+..+...+++|++|++++| +++..+..+...+++|++|++ .++
T Consensus 281 l~~~~~~~~~L~~L~L~~~--~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYA--TVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp GGGGHHHHTTCCEEECTTC--CCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCS
T ss_pred HHHHHHhhCCCCEEEccCC--CCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccC
Confidence 3444456788888888876 3677777777777888888888876 566777777777888888888 344
Q ss_pred CCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEec-----CCCCCC----HHHHHHHHhcCCCC
Q 023403 77 TSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLG-----WCEDVG----DVGVMNLAYGCPDL 147 (282)
Q Consensus 77 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~-----~~~~~~----~~~~~~l~~~~~~L 147 (282)
..+++..+..+...+++|+.|.+.. +.+++..+..+...+++|++|++. +|+.++ +.++..+...+++|
T Consensus 357 ~~l~~~~l~~l~~~~~~L~~L~~~~--~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L 434 (594)
T 2p1m_B 357 VALTEQGLVSVSMGCPKLESVLYFC--RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL 434 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEE--SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHHHhchhHHHHHHhc--CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCc
Confidence 6777777777776788888886655 337777777777778888888888 566777 66777777778888
Q ss_pred cEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCC
Q 023403 148 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTAL 227 (282)
Q Consensus 148 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 227 (282)
++|++++ .+++.++..+.+.+++|+.|++++|. +++.++..+.... ++|++|++++|+.
T Consensus 435 ~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~-----------------~~L~~L~L~~n~~- 493 (594)
T 2p1m_B 435 RRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGC-----------------DSLRKLEIRDCPF- 493 (594)
T ss_dssp CEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHC-----------------TTCCEEEEESCSC-
T ss_pred cEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcC-----------------CCcCEEECcCCCC-
Confidence 8888866 78888887777778888888888864 7777777664432 7788888888654
Q ss_pred CHHHHHHHHhhCCCCccCCCcceeeecCCCCccchhh
Q 023403 228 TPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHC 264 (282)
Q Consensus 228 ~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~~~~ 264 (282)
++.++..+.. .+++|+.|++++|+. +...+
T Consensus 494 ~~~~~~~~~~------~l~~L~~L~l~~~~~-~~~~~ 523 (594)
T 2p1m_B 494 GDKALLANAS------KLETMRSLWMSSCSV-SFGAC 523 (594)
T ss_dssp CHHHHHHTGG------GGGGSSEEEEESSCC-BHHHH
T ss_pred cHHHHHHHHH------hCCCCCEEeeeCCCC-CHHHH
Confidence 7766665553 456678888888864 54443
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.8e-20 Score=158.07 Aligned_cols=220 Identities=28% Similarity=0.441 Sum_probs=173.9
Q ss_pred cCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHH
Q 023403 10 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 89 (282)
Q Consensus 10 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 89 (282)
..+++|+.|+++++ .+.+..+......+++|++|++++| .+++..+..+.. +++|++|++++|..+++..+.....
T Consensus 90 ~~~~~L~~L~L~~~--~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 90 FSPFRVQHMDLSNS--VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp CCCBCCCEEECTTC--EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred ccCCCCCEEEccCC--CcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHh
Confidence 35789999999986 5676667777788999999999997 577776666654 9999999999977888877777777
Q ss_pred cCCCCeEEEecCCcccccHHHHHHHHHhCC-CCCEEEecCCC-CCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHH
Q 023403 90 FCRKLKILNLCGCVKAATDYALQAIGRNCN-QLQSLNLGWCE-DVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALA 167 (282)
Q Consensus 90 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~ 167 (282)
.+++|+.|++++|. .+++..+......++ +|++|++++|. .+++..+......+++|++|++++|..+++..+..+.
T Consensus 166 ~~~~L~~L~l~~~~-~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 166 SCSRLDELNLSWCF-DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp HCTTCCEEECCCCT-TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred cCCCCCEEcCCCCC-CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 89999999999972 288877777777899 99999999975 6887777777778999999999997658877666554
Q ss_pred hcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCC
Q 023403 168 NGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSG 247 (282)
Q Consensus 168 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~ 247 (282)
.+++|++|++++|..+.+.++..+.. +++|++|++++| +++..+..+...++.+
T Consensus 245 -~l~~L~~L~l~~~~~~~~~~~~~l~~------------------~~~L~~L~l~~~--i~~~~~~~l~~~l~~L----- 298 (336)
T 2ast_B 245 -QLNYLQHLSLSRCYDIIPETLLELGE------------------IPTLKTLQVFGI--VPDGTLQLLKEALPHL----- 298 (336)
T ss_dssp -GCTTCCEEECTTCTTCCGGGGGGGGG------------------CTTCCEEECTTS--SCTTCHHHHHHHSTTS-----
T ss_pred -CCCCCCEeeCCCCCCCCHHHHHHHhc------------------CCCCCEEeccCc--cCHHHHHHHHhhCcce-----
Confidence 58999999999997676655544433 399999999998 8888888887544443
Q ss_pred cceeeecCCCCccchhhc
Q 023403 248 RHSLVMSGCLNLTSVHCV 265 (282)
Q Consensus 248 L~~L~l~~c~~~~~~~~~ 265 (282)
+++ |..++++.-+
T Consensus 299 ----~l~-~n~l~~~~~~ 311 (336)
T 2ast_B 299 ----QIN-CSHFTTIARP 311 (336)
T ss_dssp ----EES-CCCSCCTTCS
T ss_pred ----EEe-cccCccccCC
Confidence 354 4446665433
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=7.1e-19 Score=159.24 Aligned_cols=255 Identities=19% Similarity=0.272 Sum_probs=159.1
Q ss_pred HHHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHH-----------------------
Q 023403 6 LSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALA----------------------- 62 (282)
Q Consensus 6 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----------------------- 62 (282)
..+...+++|+.|+++++...+++..+..+...+++|++|++++|..+. .+..+.
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE--KLATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH--HHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH--HHHHHHhcCCcceEcccccccCccchhhH
Confidence 3444566677777777653345566677776667888888887762211 122221
Q ss_pred -------------------------------HcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHH
Q 023403 63 -------------------------------HGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYAL 111 (282)
Q Consensus 63 -------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 111 (282)
..+++|++|++++|. +++..+..+...+++|+.|++.+| +++..+
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~---~~~~~l 330 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY---IEDAGL 330 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG---GHHHHH
T ss_pred HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc---cCHHHH
Confidence 234666666666654 666666665666777777777764 456666
Q ss_pred HHHHHhCCCCCEEEe--------cCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeec----
Q 023403 112 QAIGRNCNQLQSLNL--------GWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLY---- 179 (282)
Q Consensus 112 ~~l~~~~~~L~~L~l--------~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~---- 179 (282)
..+...+++|++|++ ..+..+++.++..+...+++|++|.+.. +.+++..+..+.+.+++|+.|+++
T Consensus 331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEP 409 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESST
T ss_pred HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeecccC
Confidence 666666777888877 3445677777766666677777776554 577777777776667777777777
Q ss_pred -CCCCCc----HHHHHHHHhcCcCCCCcchhc------ccccC-cccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCC
Q 023403 180 -YCRNIT----DRAIYSLAQSGVKNKPGIWES------MKGRY-DEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSG 247 (282)
Q Consensus 180 -~~~~l~----~~~~~~l~~~~~~~~~~~~~~------~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~ 247 (282)
+|..++ +.++..+...........+.. +..+. .+++|++|++++| .+++.++..+.. .|++
T Consensus 410 ~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~------~~~~ 482 (594)
T 2p1m_B 410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLS------GCDS 482 (594)
T ss_dssp TCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHH------HCTT
T ss_pred CCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHh------cCCC
Confidence 456666 555555544433222222211 00011 2577888888874 477777777754 4677
Q ss_pred cceeeecCCCCccchhhccCCCCcCCcC
Q 023403 248 RHSLVMSGCLNLTSVHCVCAGQSHRTAS 275 (282)
Q Consensus 248 L~~L~l~~c~~~~~~~~~~~~~~~~~~~ 275 (282)
|+.|++++|+. ++..+.......++++
T Consensus 483 L~~L~L~~n~~-~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 483 LRKLEIRDCPF-GDKALLANASKLETMR 509 (594)
T ss_dssp CCEEEEESCSC-CHHHHHHTGGGGGGSS
T ss_pred cCEEECcCCCC-cHHHHHHHHHhCCCCC
Confidence 79999999996 7666555555445544
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.7e-19 Score=163.38 Aligned_cols=214 Identities=20% Similarity=0.339 Sum_probs=169.6
Q ss_pred HHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecC----------
Q 023403 32 VEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCG---------- 101 (282)
Q Consensus 32 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~---------- 101 (282)
+..+...+++|++|++++|. +++..+..+...+++|++|++.+ .+.+..+..+...+++|+.|++.+
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred HHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 34455667899999999985 78888877777899999999983 566677777777899999999994
Q ss_pred CcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEec---CCCccCH----HHHHHHHhcCCCCC
Q 023403 102 CVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLC---GCVCITD----DSVIALANGCPHLR 174 (282)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~---~~~~l~~----~~l~~l~~~~~~L~ 174 (282)
|. .+++.++..+...+++|++|++. |+.+++..+..+...+++|++|++. .++.+++ .++..+..++++|+
T Consensus 362 ~~-~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 362 EG-LVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp TC-CCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred cC-ccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 54 48888888888889999999994 4778988888888778999999997 3456765 56777788899999
Q ss_pred EEeecCCC-CCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeee
Q 023403 175 SLGLYYCR-NITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVM 253 (282)
Q Consensus 175 ~L~l~~~~-~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l 253 (282)
+|+++.|. .+++.++..+.... ++|++|++++| .+++.++..+.. .|++|++|++
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~-----------------~~L~~L~L~~n-~l~~~~~~~~~~------~~~~L~~L~l 495 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYS-----------------PNVRWMLLGYV-GESDEGLMEFSR------GCPNLQKLEM 495 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSC-----------------TTCCEEEECSC-CSSHHHHHHHHT------CCTTCCEEEE
T ss_pred EEEEecCCCCccHHHHHHHHHhC-----------------ccceEeeccCC-CCCHHHHHHHHh------cCcccCeeec
Confidence 99998764 47888888887643 89999999984 699888887765 5677899999
Q ss_pred cCCCCccchhhccCCCCcCCcC
Q 023403 254 SGCLNLTSVHCVCAGQSHRTAS 275 (282)
Q Consensus 254 ~~c~~~~~~~~~~~~~~~~~~~ 275 (282)
++|. +++..+..+....+.++
T Consensus 496 ~~n~-l~~~~~~~~~~~l~~L~ 516 (592)
T 3ogk_B 496 RGCC-FSERAIAAAVTKLPSLR 516 (592)
T ss_dssp ESCC-CBHHHHHHHHHHCSSCC
T ss_pred cCCC-CcHHHHHHHHHhcCccC
Confidence 9999 77766655544444443
No 7
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=1.1e-16 Score=137.41 Aligned_cols=123 Identities=22% Similarity=0.302 Sum_probs=56.7
Q ss_pred hCCCCCEEEecCCCCCCHHHHHHHH----hcCCCCcEEEecCCCccCHHHHHH---HHhcCCCCCEEeecCCCCCcHHHH
Q 023403 117 NCNQLQSLNLGWCEDVGDVGVMNLA----YGCPDLRSLDLCGCVCITDDSVIA---LANGCPHLRSLGLYYCRNITDRAI 189 (282)
Q Consensus 117 ~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~l~~~~l~~---l~~~~~~L~~L~l~~~~~l~~~~~ 189 (282)
.+++|++|++.+| .+++.++..+. ..+++|+.|++++| .+++.+... .+..+++|++|++++|. +++.+.
T Consensus 185 ~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~ 261 (386)
T 2ca6_A 185 SHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGA 261 (386)
T ss_dssp HCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHH
T ss_pred hCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhH
Confidence 3455555555553 34444332222 23455555555552 344322222 22334555555555542 444433
Q ss_pred HHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCC
Q 023403 190 YSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 190 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~ 257 (282)
..+...-. ...+++|++|++++ +.+++.++..+...+. .++++|+.|++++|+
T Consensus 262 ~~l~~~l~------------~~~~~~L~~L~L~~-n~i~~~g~~~l~~~l~--~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 262 AAVVDAFS------------KLENIGLQTLRLQY-NEIELDAVRTLKTVID--EKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHH------------TCSSCCCCEEECCS-SCCBHHHHHHHHHHHH--HHCTTCCEEECTTSB
T ss_pred HHHHHHHh------------hccCCCeEEEECcC-CcCCHHHHHHHHHHHH--hcCCCceEEEccCCc
Confidence 33322100 01136777777777 4566654444332210 134666777777776
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=2.4e-16 Score=135.46 Aligned_cols=231 Identities=19% Similarity=0.198 Sum_probs=163.5
Q ss_pred HHHccCCCCccEEEccCCCCCCcHHHHHHH---HhhCCCccEEEcCCCC--CCCh---HHHH---HHHHcCCCCcEEecc
Q 023403 6 LSLAPKLTKLQTLVLRQDKPQLEDNAVEAI---ANSCHDLQDLDLSKSF--KLSD---RSLY---ALAHGCPNLTRLNIS 74 (282)
Q Consensus 6 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~--~~~~---~~~~---~~~~~~~~L~~L~l~ 74 (282)
...+..+++|+.|+++++ .+++.....+ ...+++|++|+|++|. .++. ..+. ..+..+++|++|+++
T Consensus 25 ~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGN--TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp SHHHHHCSCCCEEECTTS--EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHhcCCCccEEECCCC--CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344567899999999987 6666655544 3468899999999862 2221 2332 233568999999999
Q ss_pred CCCCCCHH---HHHHHHHcCCCCeEEEecCCcccccHHHHHHHHH---hC---------CCCCEEEecCCCCCCHHHHH-
Q 023403 75 GCTSFSDH---ALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR---NC---------NQLQSLNLGWCEDVGDVGVM- 138 (282)
Q Consensus 75 ~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~---~~---------~~L~~L~l~~~~~~~~~~~~- 138 (282)
++ .++.. .+......+++|+.|++++|. +++.....+.. .+ ++|++|++++| .+++..+.
T Consensus 103 ~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~ 178 (386)
T 2ca6_A 103 DN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNG--LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKE 178 (386)
T ss_dssp SC-CCCTTTHHHHHHHHHHCTTCCEEECCSSC--CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHH
T ss_pred CC-cCCHHHHHHHHHHHHhCCCCCEEECcCCC--CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHH
Confidence 85 55542 333344568999999999965 77655554443 23 89999999985 57654444
Q ss_pred --HHHhcCCCCcEEEecCCCccCHHHHHHHHh----cCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCc
Q 023403 139 --NLAYGCPDLRSLDLCGCVCITDDSVIALAN----GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYD 212 (282)
Q Consensus 139 --~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 212 (282)
.....++.|++|++++| .+++.++..+.. .+++|+.|++++| .+++.+...+... +..
T Consensus 179 l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~--------------l~~ 242 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIA--------------LKS 242 (386)
T ss_dssp HHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHH--------------GGG
T ss_pred HHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHH--------------Hcc
Confidence 33447889999999995 888877655444 6899999999997 4877666555443 233
Q ss_pred ccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccc
Q 023403 213 EEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTS 261 (282)
Q Consensus 213 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~ 261 (282)
+++|++|++++ +.+++.+...+...+.. ..+++|+.|++++|. ++.
T Consensus 243 ~~~L~~L~L~~-n~i~~~~~~~l~~~l~~-~~~~~L~~L~L~~n~-i~~ 288 (386)
T 2ca6_A 243 WPNLRELGLND-CLLSARGAAAVVDAFSK-LENIGLQTLRLQYNE-IEL 288 (386)
T ss_dssp CTTCCEEECTT-CCCCHHHHHHHHHHHHT-CSSCCCCEEECCSSC-CBH
T ss_pred CCCcCEEECCC-CCCchhhHHHHHHHHhh-ccCCCeEEEECcCCc-CCH
Confidence 48999999999 56888877776654321 136788999999997 555
No 9
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=7.7e-17 Score=141.52 Aligned_cols=176 Identities=20% Similarity=0.232 Sum_probs=81.4
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHHH----cCCCCeEEEecCCcccccHHHHHHH---HHhCCCCCEEEecCCCCCCHHH
Q 023403 64 GCPNLTRLNISGCTSFSDHALAYLCG----FCRKLKILNLCGCVKAATDYALQAI---GRNCNQLQSLNLGWCEDVGDVG 136 (282)
Q Consensus 64 ~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~ 136 (282)
.+++|++|+++++ .+++.....+.. .+++|+.|++++|. +++.+...+ ...+++|++|+++++ .+++.+
T Consensus 225 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~ 300 (461)
T 1z7x_W 225 SKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECG--ITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEG 300 (461)
T ss_dssp HCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC--CCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHH
T ss_pred hCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCC--CCHHHHHHHHHHHhhCCCcceEECCCC-CCchHH
Confidence 3455555555542 333333222221 24455555555532 444332222 123455555555543 344433
Q ss_pred HHHHHhc----CCCCcEEEecCCCccCHHH---HHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccc
Q 023403 137 VMNLAYG----CPDLRSLDLCGCVCITDDS---VIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKG 209 (282)
Q Consensus 137 ~~~l~~~----~~~L~~L~l~~~~~l~~~~---l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 209 (282)
...+... .++|++|++++| .+++.+ +...+..+++|++|++++| .+++.+...+...-.
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~------------ 366 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLG------------ 366 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHT------------
T ss_pred HHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHc------------
Confidence 3332221 135555555553 343322 2222233456666666654 355544444433200
Q ss_pred cCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccchh
Q 023403 210 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVH 263 (282)
Q Consensus 210 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~~~ 263 (282)
...++|++|++++| .+++.+...+...+ ..+++|++|++++|. +++..
T Consensus 367 -~~~~~L~~L~L~~n-~i~~~~~~~l~~~l---~~~~~L~~L~l~~N~-i~~~~ 414 (461)
T 1z7x_W 367 -QPGSVLRVLWLADC-DVSDSSCSSLAATL---LANHSLRELDLSNNC-LGDAG 414 (461)
T ss_dssp -STTCCCCEEECTTS-CCCHHHHHHHHHHH---HHCCCCCEEECCSSS-CCHHH
T ss_pred -CCCCceEEEECCCC-CCChhhHHHHHHHH---HhCCCccEEECCCCC-CCHHH
Confidence 01257777777773 67765555554332 245667778887775 55543
No 10
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=2.3e-16 Score=138.45 Aligned_cols=72 Identities=24% Similarity=0.331 Sum_probs=30.7
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHh----cCCCCcEEEecCCCccCHHH---HHHHHhcCCCCCEEeecCCCCCcHHHHH
Q 023403 118 CNQLQSLNLGWCEDVGDVGVMNLAY----GCPDLRSLDLCGCVCITDDS---VIALANGCPHLRSLGLYYCRNITDRAIY 190 (282)
Q Consensus 118 ~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~---l~~l~~~~~~L~~L~l~~~~~l~~~~~~ 190 (282)
+++|++|+++++ .+++.++..+.. ..+.|++|++++| .+++.+ +......+++|++|++++| .+++.++.
T Consensus 169 ~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 245 (461)
T 1z7x_W 169 KPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMA 245 (461)
T ss_dssp CTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHH
T ss_pred CCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHH
Confidence 445555555543 244333333222 1234555555553 333322 1222223455555555554 34444444
Q ss_pred HH
Q 023403 191 SL 192 (282)
Q Consensus 191 ~l 192 (282)
.+
T Consensus 246 ~l 247 (461)
T 1z7x_W 246 EL 247 (461)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 11
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=8.6e-15 Score=124.66 Aligned_cols=177 Identities=19% Similarity=0.172 Sum_probs=108.2
Q ss_pred hhHHHHccCCCCccEEEccCCCCCCcH---HHHHHHHhhCC-CccEEEcCCCCCCChHHH---HHHHHcC-CCCcEEecc
Q 023403 3 NLVLSLAPKLTKLQTLVLRQDKPQLED---NAVEAIANSCH-DLQDLDLSKSFKLSDRSL---YALAHGC-PNLTRLNIS 74 (282)
Q Consensus 3 ~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~---~~~~~~~-~~L~~L~l~ 74 (282)
..++.+....++|+.|+++++. +++ ..+......++ +|++|++++| .+++... ..++... ++|++|+++
T Consensus 12 ~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 12 NPVEEFTSIPHGVTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp CHHHHHHTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred HHHHHHHhCCCCceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECc
Confidence 3456666677779999998863 333 23334445567 8999999887 5554433 3333333 889999998
Q ss_pred CCCCCC---HHHHHHHHHcC-CCCeEEEecCCcccccHHHHHHHHHh----CCCCCEEEecCCCCCCHHHHH---HHHhc
Q 023403 75 GCTSFS---DHALAYLCGFC-RKLKILNLCGCVKAATDYALQAIGRN----CNQLQSLNLGWCEDVGDVGVM---NLAYG 143 (282)
Q Consensus 75 ~~~~~~---~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~---~l~~~ 143 (282)
+| .++ ...+......+ ++|+.|++++|. +++.....+... .++|++|++++| .+++.+.. .....
T Consensus 89 ~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~ 164 (362)
T 3goz_A 89 GN-FLSYKSSDELVKTLAAIPFTITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAA 164 (362)
T ss_dssp SS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHT
T ss_pred CC-cCChHHHHHHHHHHHhCCCCccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhc
Confidence 85 343 33333333445 788999988854 665554444332 357888888875 56543332 22334
Q ss_pred CC-CCcEEEecCCCccCHHH---HHHHHhcC-CCCCEEeecCCCCCcHHH
Q 023403 144 CP-DLRSLDLCGCVCITDDS---VIALANGC-PHLRSLGLYYCRNITDRA 188 (282)
Q Consensus 144 ~~-~L~~L~l~~~~~l~~~~---l~~l~~~~-~~L~~L~l~~~~~l~~~~ 188 (282)
.+ .|++|++++| .+++.. +......+ ++|++|++++|. +++.+
T Consensus 165 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~ 212 (362)
T 3goz_A 165 IPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKS 212 (362)
T ss_dssp SCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSC
T ss_pred CCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhH
Confidence 44 8888888885 554333 33333445 488888888864 65533
No 12
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=1.1e-15 Score=130.12 Aligned_cols=226 Identities=18% Similarity=0.150 Sum_probs=152.9
Q ss_pred HHHccCCC-CccEEEccCCCCCCc---HHHHHHHHhhC-CCccEEEcCCCCCCChHH---HHHHHHcC-CCCcEEeccCC
Q 023403 6 LSLAPKLT-KLQTLVLRQDKPQLE---DNAVEAIANSC-HDLQDLDLSKSFKLSDRS---LYALAHGC-PNLTRLNISGC 76 (282)
Q Consensus 6 ~~~~~~~~-~L~~L~l~~~~~~~~---~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~---~~~~~~~~-~~L~~L~l~~~ 76 (282)
...+..++ +|++|+++++ .++ ...+....... ++|++|++++| .+++.. +...+..+ ++|++|++++|
T Consensus 43 ~~~l~~~~~~L~~L~Ls~N--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 119 (362)
T 3goz_A 43 IQAFANTPASVTSLNLSGN--SLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN 119 (362)
T ss_dssp HHHHHTCCTTCCEEECCSS--CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred HHHHHhCCCceeEEECcCC--CCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCC
Confidence 35567788 9999999987 444 33344443433 89999999997 455433 34444445 89999999985
Q ss_pred CCCCHHHHH---HHHHc-CCCCeEEEecCCcccccHHHHHHHH---HhCC-CCCEEEecCCCCCCHH---HHHHHHhcC-
Q 023403 77 TSFSDHALA---YLCGF-CRKLKILNLCGCVKAATDYALQAIG---RNCN-QLQSLNLGWCEDVGDV---GVMNLAYGC- 144 (282)
Q Consensus 77 ~~~~~~~~~---~~~~~-~~~L~~L~l~~~~~~~~~~~~~~l~---~~~~-~L~~L~l~~~~~~~~~---~~~~l~~~~- 144 (282)
.++..... ..... ..+|+.|++++|. +++.+...+. ...+ +|++|++++| .+++. .+......+
T Consensus 120 -~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~ 195 (362)
T 3goz_A 120 -DFSSKSSSEFKQAFSNLPASITSLNLRGND--LGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIP 195 (362)
T ss_dssp -CGGGSCHHHHHHHHTTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSC
T ss_pred -cCCcHHHHHHHHHHHhCCCceeEEEccCCc--CCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCC
Confidence 45443333 32333 3699999999954 6754444332 3354 8999999986 45543 344444456
Q ss_pred CCCcEEEecCCCccCHHHHHHH---Hhc-CCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEe
Q 023403 145 PDLRSLDLCGCVCITDDSVIAL---ANG-CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLN 220 (282)
Q Consensus 145 ~~L~~L~l~~~~~l~~~~l~~l---~~~-~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 220 (282)
+.|++|++++| .+++.+...+ ... .++|++|++++| .+++.+...+... ...+++|++|+
T Consensus 196 ~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~--------------~~~l~~L~~L~ 259 (362)
T 3goz_A 196 ASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLL--------------KDSLKHLQTVY 259 (362)
T ss_dssp TTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHT--------------TTTTTTCSEEE
T ss_pred CCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHH--------------HhcCCCccEEE
Confidence 49999999995 6766433322 223 469999999997 5766555554433 22348899999
Q ss_pred ccCCC--CCCHHHHHHHHhhCCCCccCCCcceeeecCCC
Q 023403 221 ISQCT--ALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 221 l~~~~--~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~ 257 (282)
+++|. .+++..+..+...++. +++|+.|+++++.
T Consensus 260 L~~n~l~~i~~~~~~~l~~~~~~---l~~L~~LdL~~N~ 295 (362)
T 3goz_A 260 LDYDIVKNMSKEQCKALGAAFPN---IQKIILVDKNGKE 295 (362)
T ss_dssp EEHHHHTTCCHHHHHHHHTTSTT---CCEEEEECTTSCB
T ss_pred eccCCccccCHHHHHHHHHHhcc---CCceEEEecCCCc
Confidence 99964 5888888888877664 4678999999887
No 13
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.51 E-value=9.1e-13 Score=112.34 Aligned_cols=177 Identities=21% Similarity=0.235 Sum_probs=128.5
Q ss_pred CCCccEEEcCCCCCCChHHHHHHHHc----CCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHH
Q 023403 39 CHDLQDLDLSKSFKLSDRSLYALAHG----CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAI 114 (282)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 114 (282)
.+.|++|++++| .++......+... +++|++|++++| .+++..+..+...+++|+.|++++|. +++.+...+
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~--l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNS--LGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSC--CCHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCC--CCHHHHHHH
Confidence 467999999987 5776665554432 268999999884 67777777776667789999999854 787777766
Q ss_pred HHh----CCCCCEEEecCCCCCCHHHHHHHH---hcCCCCcEEEecCCCccCHHHHHHHH---hcCCCCCEEeecCCCCC
Q 023403 115 GRN----CNQLQSLNLGWCEDVGDVGVMNLA---YGCPDLRSLDLCGCVCITDDSVIALA---NGCPHLRSLGLYYCRNI 184 (282)
Q Consensus 115 ~~~----~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~l~~l~---~~~~~L~~L~l~~~~~l 184 (282)
... .++|++|++++| .+++.+...+. ...+.|++|++++| .+++.++..+. ...++|+.|++++| .+
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i 223 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GA 223 (372)
T ss_dssp HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CC
T ss_pred HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CC
Confidence 543 467999999885 57766555443 45778999999984 68877765554 34578999999986 57
Q ss_pred cHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHh
Q 023403 185 TDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCD 237 (282)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 237 (282)
++.+...+... +...++|++|++++ +.+++.+...+..
T Consensus 224 ~~~g~~~l~~~--------------L~~~~~L~~L~Ls~-N~i~~~g~~~L~~ 261 (372)
T 3un9_A 224 GDTAALALARA--------------AREHPSLELLHLYF-NELSSEGRQVLRD 261 (372)
T ss_dssp CHHHHHHHHHH--------------HHHCSSCCEEECTT-SSCCHHHHHHHHH
T ss_pred CHHHHHHHHHH--------------HHhCCCCCEEeccC-CCCCHHHHHHHHH
Confidence 87766655443 12237899999998 5688888888876
No 14
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.50 E-value=2.8e-12 Score=109.33 Aligned_cols=175 Identities=21% Similarity=0.227 Sum_probs=136.4
Q ss_pred CCCccEEEccCCCCCCcHHHHHHHHhh----CCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHH
Q 023403 12 LTKLQTLVLRQDKPQLEDNAVEAIANS----CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 87 (282)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 87 (282)
+++|+.|+++++ .+++.....+... +++|++|+|++| .+++.++..+...+++|++|++++| .+++.....+
T Consensus 71 ~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGV--RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTS--CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHH
T ss_pred HhhCCEEEecCC--CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHH
Confidence 468999999987 5666555554433 368999999997 6888888888777889999999995 8887766655
Q ss_pred HH----cCCCCeEEEecCCcccccHHHHHHHH---HhCCCCCEEEecCCCCCCHHHHHHHH---hcCCCCcEEEecCCCc
Q 023403 88 CG----FCRKLKILNLCGCVKAATDYALQAIG---RNCNQLQSLNLGWCEDVGDVGVMNLA---YGCPDLRSLDLCGCVC 157 (282)
Q Consensus 88 ~~----~~~~L~~L~l~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~ 157 (282)
.. ..++|+.|++++|. +++.+...+. ...++|++|++++| .+++.++..+. ...+.|++|++++| .
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~ 222 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNP--LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-G 222 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSC--CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-C
T ss_pred HHHHHhcCCccceeeCCCCC--CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-C
Confidence 43 35789999999965 7877766554 45789999999985 58877655443 45679999999995 8
Q ss_pred cCHHHHHHHHh---cCCCCCEEeecCCCCCcHHHHHHHHhc
Q 023403 158 ITDDSVIALAN---GCPHLRSLGLYYCRNITDRAIYSLAQS 195 (282)
Q Consensus 158 l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~ 195 (282)
+++.+...+.. ..++|++|++++| .+++.+...+...
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~ 262 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDL 262 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHH
Confidence 99877665544 5689999999997 5998888888765
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.50 E-value=7.3e-14 Score=118.05 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=30.1
Q ss_pred cCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccch
Q 023403 210 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV 262 (282)
Q Consensus 210 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~~ 262 (282)
...+++|++|++++| .+++.....+. .+++|+.|++++|+ ++++
T Consensus 283 ~~~l~~L~~L~L~~n-~l~~~~~~~l~-------~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNN-QLGNEDMEVIG-------GLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp GGGCTTCSEEECCSS-CCCGGGHHHHH-------TCTTCSEEECCSSS-CCCC
T ss_pred hcCCCCCCEEECcCC-cCCCcChhHhh-------ccccCCEEEccCCc-cccc
Confidence 445678888888884 56655555543 56778888888887 5554
No 16
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.45 E-value=1.2e-13 Score=104.00 Aligned_cols=103 Identities=22% Similarity=0.385 Sum_probs=62.2
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhc---CCCCCEEeecCCCCCcHHHHHHHHhcC
Q 023403 120 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG---CPHLRSLGLYYCRNITDRAIYSLAQSG 196 (282)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~---~~~L~~L~l~~~~~l~~~~~~~l~~~~ 196 (282)
.|++|++++|. +++.++..+ ..+++|++|++++|..++|.++..+.+. +++|++|++++|..+++.++..+...
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~- 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF- 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC-
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC-
Confidence 35666666654 666655554 3566666666666666666666666541 34566666666666666666665432
Q ss_pred cCCCCcchhcccccCcccCcceEeccCCCCCCHHH--HHHHHhhCCCC
Q 023403 197 VKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPA--VQALCDTFPAL 242 (282)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~~~l 242 (282)
++|++|++++|+.+++.+ ...+.+.+|++
T Consensus 139 -----------------~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l 169 (176)
T 3e4g_A 139 -----------------RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169 (176)
T ss_dssp -----------------TTCCEEEEESCTTCCCHHHHHHHHHHHCTTC
T ss_pred -----------------CCCCEEECCCCCCCCchHHHHHHHHHHCCCc
Confidence 667777777777676654 34455555544
No 17
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.43 E-value=1.4e-13 Score=103.53 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=87.3
Q ss_pred CCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCC
Q 023403 145 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC 224 (282)
Q Consensus 145 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (282)
..|++|++++|. +++.++..+ .+|++|++|++++|..+++.++..+.... ..+++|++|++++|
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~--------------~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLE--------------NLQKSMLEMEIISC 124 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCH--------------HHHHHCCEEEEESC
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcc--------------cccCCCCEEEcCCC
Confidence 369999999984 999999877 57999999999999999999999998630 00168999999999
Q ss_pred CCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccchh--hccCCCCcCCc
Q 023403 225 TALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVH--CVCAGQSHRTA 274 (282)
Q Consensus 225 ~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~~~--~~~~~~~~~~~ 274 (282)
+.+|+.++..+. .|++|++|++++|+.+++.. +..+-..+|.+
T Consensus 125 ~~ITD~Gl~~L~-------~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l 169 (176)
T 3e4g_A 125 GNVTDKGIIALH-------HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169 (176)
T ss_dssp TTCCHHHHHHGG-------GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTC
T ss_pred CcCCHHHHHHHh-------cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCc
Confidence 999999999875 57888999999999999854 33333444443
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.41 E-value=1.2e-12 Score=110.56 Aligned_cols=126 Identities=21% Similarity=0.186 Sum_probs=75.9
Q ss_pred cCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhc
Q 023403 90 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG 169 (282)
Q Consensus 90 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 169 (282)
.+++|+.|++++|. ++.... ...+++|++|++++| .+++. . ....+++|++|++++| .+++. . ....
T Consensus 219 ~~~~L~~L~l~~n~--l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~l~~n-~l~~~--~-~~~~ 285 (347)
T 4fmz_A 219 NMTRLNSLKIGNNK--ITDLSP---LANLSQLTWLEIGTN-QISDI--N-AVKDLTKLKMLNVGSN-QISDI--S-VLNN 285 (347)
T ss_dssp GCTTCCEEECCSSC--CCCCGG---GTTCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSS-CCCCC--G-GGGG
T ss_pred cCCcCCEEEccCCc--cCCCcc---hhcCCCCCEEECCCC-ccCCC--h-hHhcCCCcCEEEccCC-ccCCC--h-hhcC
Confidence 45667777766643 332211 334667777777664 34331 1 1335667777777774 44432 2 2345
Q ss_pred CCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcc
Q 023403 170 CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRH 249 (282)
Q Consensus 170 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~ 249 (282)
+++|+.|++++|. ++......+... ++|++|++++|+ +++.. .+..+++|+
T Consensus 286 l~~L~~L~L~~n~-l~~~~~~~l~~l------------------~~L~~L~L~~n~-l~~~~---------~~~~l~~L~ 336 (347)
T 4fmz_A 286 LSQLNSLFLNNNQ-LGNEDMEVIGGL------------------TNLTTLFLSQNH-ITDIR---------PLASLSKMD 336 (347)
T ss_dssp CTTCSEEECCSSC-CCGGGHHHHHTC------------------TTCSEEECCSSS-CCCCG---------GGGGCTTCS
T ss_pred CCCCCEEECcCCc-CCCcChhHhhcc------------------ccCCEEEccCCc-ccccc---------Chhhhhccc
Confidence 6777777777763 554444444443 899999999965 54321 145778899
Q ss_pred eeeecCCC
Q 023403 250 SLVMSGCL 257 (282)
Q Consensus 250 ~L~l~~c~ 257 (282)
+|++++|+
T Consensus 337 ~L~l~~N~ 344 (347)
T 4fmz_A 337 SADFANQV 344 (347)
T ss_dssp EESSSCC-
T ss_pred eeehhhhc
Confidence 99999986
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.38 E-value=1.4e-14 Score=126.83 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=45.7
Q ss_pred ccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHH-H
Q 023403 9 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY-L 87 (282)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~ 87 (282)
+.++++|++|+++++.. ...........+++|++|++++| .++......+ ..+++|++|++++| .+....... .
T Consensus 50 ~~~l~~L~~L~L~~n~~--~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~ 124 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTP--GLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAF-NGLANLEVLTLTQC-NLDGAVLSGNF 124 (455)
T ss_dssp TSSCTTCCEEECCCCST--TCEECTTTTTTCTTCCEEECTTC-TTCEECTTTT-TTCTTCCEEECTTS-CCBTHHHHSST
T ss_pred hccCccccEEECcCCcc--cceECcccccccccCCEEeCCCC-ccCccChhhc-cCcccCCEEeCCCC-CCCccccCccc
Confidence 44555555555555421 10000111233455666666554 2222111111 23555666666553 332211111 1
Q ss_pred HHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecC
Q 023403 88 CGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGW 128 (282)
Q Consensus 88 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 128 (282)
...+++|+.|+++++. +.......+...+++|++|++++
T Consensus 125 ~~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 125 FKPLTSLEMLVLRDNN--IKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp TTTCTTCCEEECCSSB--CCSCCCCGGGGGCTTCCEEECTT
T ss_pred ccCcccCCEEECCCCc--cCccCcccccCCCCcccEEeCCC
Confidence 2234555666555532 33221112123355555555554
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.38 E-value=3.9e-15 Score=125.03 Aligned_cols=217 Identities=19% Similarity=0.253 Sum_probs=134.9
Q ss_pred CCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHc
Q 023403 11 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 90 (282)
Q Consensus 11 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 90 (282)
..++++.|+++++. +. .....+ ..+++|++|++++| .++ .++..+..+++|++|+++++ .+. .+......
T Consensus 79 ~~~~l~~L~L~~n~--l~-~lp~~l-~~l~~L~~L~L~~n-~l~--~lp~~~~~l~~L~~L~Ls~n-~l~--~lp~~l~~ 148 (328)
T 4fcg_A 79 TQPGRVALELRSVP--LP-QFPDQA-FRLSHLQHMTIDAA-GLM--ELPDTMQQFAGLETLTLARN-PLR--ALPASIAS 148 (328)
T ss_dssp TSTTCCEEEEESSC--CS-SCCSCG-GGGTTCSEEEEESS-CCC--CCCSCGGGGTTCSEEEEESC-CCC--CCCGGGGG
T ss_pred cccceeEEEccCCC--ch-hcChhh-hhCCCCCEEECCCC-Ccc--chhHHHhccCCCCEEECCCC-ccc--cCcHHHhc
Confidence 35788999999863 32 112222 33788999999986 444 22222345789999999885 444 22223456
Q ss_pred CCCCeEEEecCCcccccHHHHHHH--------HHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHH
Q 023403 91 CRKLKILNLCGCVKAATDYALQAI--------GRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDS 162 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l--------~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 162 (282)
+++|+.|++++|. ........+ ...+++|++|++++| .++. +......+++|++|++++| .++.
T Consensus 149 l~~L~~L~L~~n~--~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~--lp~~l~~l~~L~~L~L~~N-~l~~-- 220 (328)
T 4fcg_A 149 LNRLRELSIRACP--ELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRS--LPASIANLQNLKSLKIRNS-PLSA-- 220 (328)
T ss_dssp CTTCCEEEEEEET--TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCC--CCGGGGGCTTCCEEEEESS-CCCC--
T ss_pred CcCCCEEECCCCC--CccccChhHhhccchhhhccCCCCCEEECcCC-CcCc--chHhhcCCCCCCEEEccCC-CCCc--
Confidence 8899999998753 221111111 123788999999875 4441 2122446788999999985 5552
Q ss_pred HHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCC-C
Q 023403 163 VIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP-A 241 (282)
Q Consensus 163 l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~-~ 241 (282)
+..-+..+++|++|++++|..... . +. ....+++|++|++++|+.++ ..| .
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~-~------------p~------~~~~l~~L~~L~L~~n~~~~---------~~p~~ 272 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRN-Y------------PP------IFGGRAPLKRLILKDCSNLL---------TLPLD 272 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCB-C------------CC------CTTCCCCCCEEECTTCTTCC---------BCCTT
T ss_pred CchhhccCCCCCEEECcCCcchhh-h------------HH------HhcCCCCCCEEECCCCCchh---------hcchh
Confidence 222245688999999998753321 0 00 12344899999999976554 233 3
Q ss_pred CccCCCcceeeecCCCCccchhhccCCCCcCCcC
Q 023403 242 LHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTAS 275 (282)
Q Consensus 242 l~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~ 275 (282)
+..+++|+.|++++|..... ++..+...++++
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~--iP~~l~~L~~L~ 304 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSR--LPSLIAQLPANC 304 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCC--CCGGGGGSCTTC
T ss_pred hhcCCCCCEEeCCCCCchhh--ccHHHhhccCce
Confidence 56788999999999987765 344444444443
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.34 E-value=4.4e-14 Score=123.72 Aligned_cols=89 Identities=18% Similarity=0.146 Sum_probs=42.4
Q ss_pred ccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHH-HHHcCCCCcEEeccCCCCCCHHHHHHH
Q 023403 9 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA-LAHGCPNLTRLNISGCTSFSDHALAYL 87 (282)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~ 87 (282)
+..+++|++|+++++. +...... ....+++|++|++++| .++...+.. .+..+++|++|+++++ .+........
T Consensus 75 ~~~l~~L~~L~Ls~n~--l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 149 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQ--FLQLETG-AFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASF 149 (455)
T ss_dssp TTTCTTCCEEECTTCT--TCEECTT-TTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGG
T ss_pred ccccccCCEEeCCCCc--cCccChh-hccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCC-ccCccCcccc
Confidence 4566777777777652 2211111 1233566777777665 344322221 1234566666666653 2322111111
Q ss_pred HHcCCCCeEEEecCC
Q 023403 88 CGFCRKLKILNLCGC 102 (282)
Q Consensus 88 ~~~~~~L~~L~l~~~ 102 (282)
...+++|+.|+++++
T Consensus 150 ~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 150 FLNMRRFHVLDLTFN 164 (455)
T ss_dssp GGGCTTCCEEECTTC
T ss_pred cCCCCcccEEeCCCC
Confidence 233556666666553
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.30 E-value=1.3e-14 Score=119.41 Aligned_cols=208 Identities=19% Similarity=0.109 Sum_probs=128.7
Q ss_pred CCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcC
Q 023403 12 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 91 (282)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 91 (282)
.++++.|+++++ .++... ......+++|++|+++++ .++...... +..+++|++|+++++..+...... ....+
T Consensus 31 ~~~l~~L~l~~n--~i~~~~-~~~~~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~~~-~~~~l 104 (285)
T 1ozn_A 31 PAASQRIFLHGN--RISHVP-AASFRACRNLTILWLHSN-VLARIDAAA-FTGLALLEQLDLSDNAQLRSVDPA-TFHGL 104 (285)
T ss_dssp CTTCSEEECTTS--CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSCTTCCCCCTT-TTTTC
T ss_pred CCCceEEEeeCC--cCCccC-HHHcccCCCCCEEECCCC-ccceeCHhh-cCCccCCCEEeCCCCCCccccCHH-HhcCC
Confidence 468999999986 333211 122355789999999986 444322222 235799999999886424322111 12347
Q ss_pred CCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCC
Q 023403 92 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP 171 (282)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 171 (282)
++|+.|+++++. +....... ...+++|++|+++++ .+..... .....+++|++|+++++ .++... ...+..++
T Consensus 105 ~~L~~L~l~~n~--l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~ 177 (285)
T 1ozn_A 105 GRLHTLHLDRCG--LQELGPGL-FRGLAALQYLYLQDN-ALQALPD-DTFRDLGNLTHLFLHGN-RISSVP-ERAFRGLH 177 (285)
T ss_dssp TTCCEEECTTSC--CCCCCTTT-TTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCT
T ss_pred cCCCEEECCCCc--CCEECHhH-hhCCcCCCEEECCCC-cccccCH-hHhccCCCccEEECCCC-cccccC-HHHhcCcc
Confidence 899999999854 44322211 235789999999885 4443211 12335788999999995 554321 11234578
Q ss_pred CCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCccee
Q 023403 172 HLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSL 251 (282)
Q Consensus 172 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L 251 (282)
+|++|+++++. ++...... ...+++|++|++++ +.+++.....+ ..+++|+.|
T Consensus 178 ~L~~L~l~~n~-l~~~~~~~------------------~~~l~~L~~L~l~~-n~l~~~~~~~~-------~~l~~L~~L 230 (285)
T 1ozn_A 178 SLDRLLLHQNR-VAHVHPHA------------------FRDLGRLMTLYLFA-NNLSALPTEAL-------APLRALQYL 230 (285)
T ss_dssp TCCEEECCSSC-CCEECTTT------------------TTTCTTCCEEECCS-SCCSCCCHHHH-------TTCTTCCEE
T ss_pred ccCEEECCCCc-ccccCHhH------------------ccCcccccEeeCCC-CcCCcCCHHHc-------ccCcccCEE
Confidence 99999999874 43211111 22348999999999 46655433333 356788999
Q ss_pred eecCCCCc
Q 023403 252 VMSGCLNL 259 (282)
Q Consensus 252 ~l~~c~~~ 259 (282)
++++++..
T Consensus 231 ~l~~N~~~ 238 (285)
T 1ozn_A 231 RLNDNPWV 238 (285)
T ss_dssp ECCSSCEE
T ss_pred eccCCCcc
Confidence 99988744
No 23
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.29 E-value=5e-13 Score=111.40 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=17.7
Q ss_pred cCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCC
Q 023403 214 EGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 214 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~ 257 (282)
++|++|++++ +.+++. |.+..+++|+.|++++++
T Consensus 274 ~~L~~L~Ls~-N~l~~~---------p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 AKLSVLDLSY-NRLDRN---------PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SEEEEEECCS-SCCCSC---------CCTTTSCEEEEEECTTCT
T ss_pred CCceEEECCC-CCCCCC---------hhHhhCCCCCEEeccCCC
Confidence 4566666666 344321 223445566666666554
No 24
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.29 E-value=1.5e-12 Score=108.36 Aligned_cols=190 Identities=17% Similarity=0.230 Sum_probs=130.0
Q ss_pred CCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHc
Q 023403 11 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 90 (282)
Q Consensus 11 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 90 (282)
.+++|+.|+++++. +.. +.. ...+++|++|++++| .+++... +..+++|++|+++++ .+... .. ...
T Consensus 39 ~l~~L~~L~l~~~~--i~~--l~~-~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~--~~-~~~ 105 (308)
T 1h6u_A 39 DLDGITTLSAFGTG--VTT--IEG-VQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGN-PLKNV--SA-IAG 105 (308)
T ss_dssp HHHTCCEEECTTSC--CCC--CTT-GGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSC-CCSCC--GG-GTT
T ss_pred HcCCcCEEEeeCCC--ccC--chh-hhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCC-cCCCc--hh-hcC
Confidence 36789999999863 322 111 356899999999987 4443222 446899999999985 44332 12 345
Q ss_pred CCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcC
Q 023403 91 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 170 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 170 (282)
+++|+.|+++++. +.+.. . ...+++|++|+++++ .+++... ...+++|++|++++| .+++ +.. ...+
T Consensus 106 l~~L~~L~l~~n~--l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~--~~~-l~~l 172 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ--ITDVT--P-LAGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNA-QVSD--LTP-LANL 172 (308)
T ss_dssp CTTCCEEECTTSC--CCCCG--G-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCC--CGG-GTTC
T ss_pred CCCCCEEECCCCC--CCCch--h-hcCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCC-cCCC--Chh-hcCC
Confidence 8899999999964 54422 2 346899999999985 4553221 446889999999995 5654 222 4568
Q ss_pred CCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcce
Q 023403 171 PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHS 250 (282)
Q Consensus 171 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~ 250 (282)
++|+.|++++|. +++.. .+ ..+++|++|++++| .+++.. .+..+++|+.
T Consensus 173 ~~L~~L~l~~n~-l~~~~--~l------------------~~l~~L~~L~L~~N-~l~~~~---------~l~~l~~L~~ 221 (308)
T 1h6u_A 173 SKLTTLKADDNK-ISDIS--PL------------------ASLPNLIEVHLKNN-QISDVS---------PLANTSNLFI 221 (308)
T ss_dssp TTCCEEECCSSC-CCCCG--GG------------------GGCTTCCEEECTTS-CCCBCG---------GGTTCTTCCE
T ss_pred CCCCEEECCCCc-cCcCh--hh------------------cCCCCCCEEEccCC-ccCccc---------cccCCCCCCE
Confidence 999999999974 43211 12 22389999999994 565432 2457889999
Q ss_pred eeecCCC
Q 023403 251 LVMSGCL 257 (282)
Q Consensus 251 L~l~~c~ 257 (282)
|++++++
T Consensus 222 L~l~~N~ 228 (308)
T 1h6u_A 222 VTLTNQT 228 (308)
T ss_dssp EEEEEEE
T ss_pred EEccCCe
Confidence 9999887
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.27 E-value=8.6e-12 Score=109.65 Aligned_cols=148 Identities=22% Similarity=0.259 Sum_probs=72.6
Q ss_pred ccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHH
Q 023403 9 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 88 (282)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 88 (282)
+.++++|+.|+++++. +.+. . ....+++|++|++++|. +..... ...+++|++|+++++ .+... . ..
T Consensus 173 ~~~l~~L~~L~l~~n~--l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~-~l 239 (466)
T 1o6v_A 173 LANLTTLERLDISSNK--VSDI--S-VLAKLTNLESLIATNNQ-ISDITP---LGILTNLDELSLNGN-QLKDI--G-TL 239 (466)
T ss_dssp GTTCTTCCEEECCSSC--CCCC--G-GGGGCTTCSEEECCSSC-CCCCGG---GGGCTTCCEEECCSS-CCCCC--G-GG
T ss_pred hccCCCCCEEECcCCc--CCCC--h-hhccCCCCCEEEecCCc-cccccc---ccccCCCCEEECCCC-Ccccc--h-hh
Confidence 3456666666666542 2211 0 12345666666666652 322111 223566666666664 23221 1 12
Q ss_pred HcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHh
Q 023403 89 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN 168 (282)
Q Consensus 89 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 168 (282)
..+++|+.|++++|. +..... ...+++|+.|++++| .+.+... ...++.|++|++++| .+++. .. ..
T Consensus 240 ~~l~~L~~L~l~~n~--l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~--~~-~~ 306 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQ--ISNLAP---LSGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNEN-QLEDI--SP-IS 306 (466)
T ss_dssp GGCTTCSEEECCSSC--CCCCGG---GTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSS-CCSCC--GG-GG
T ss_pred hcCCCCCEEECCCCc--cccchh---hhcCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCC-cccCc--hh-hc
Confidence 345666666666643 332211 234566666666664 3332111 234566666666664 33321 11 23
Q ss_pred cCCCCCEEeecCCC
Q 023403 169 GCPHLRSLGLYYCR 182 (282)
Q Consensus 169 ~~~~L~~L~l~~~~ 182 (282)
.+++|+.|++++|.
T Consensus 307 ~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 307 NLKNLTYLTLYFNN 320 (466)
T ss_dssp GCTTCSEEECCSSC
T ss_pred CCCCCCEEECcCCc
Confidence 46667777776653
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.26 E-value=8.4e-13 Score=111.87 Aligned_cols=162 Identities=20% Similarity=0.108 Sum_probs=89.6
Q ss_pred HccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHH
Q 023403 8 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 87 (282)
Q Consensus 8 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 87 (282)
.+.++++|+.|+++++ .++... ......+++|++|++++| .++... ...+..+++|++|+++++ .+........
T Consensus 71 ~~~~l~~L~~L~L~~n--~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~l~~~~~ 144 (353)
T 2z80_A 71 DLQRCVNLQALVLTSN--GINTIE-EDSFSSLGSLEHLDLSYN-YLSNLS-SSWFKPLSSLTFLNLLGN-PYKTLGETSL 144 (353)
T ss_dssp TTTTCTTCCEEECTTS--CCCEEC-TTTTTTCTTCCEEECCSS-CCSSCC-HHHHTTCTTCSEEECTTC-CCSSSCSSCS
T ss_pred HhccCCCCCEEECCCC--ccCccC-HhhcCCCCCCCEEECCCC-cCCcCC-HhHhCCCccCCEEECCCC-CCcccCchhh
Confidence 4567888999998876 333211 112245688889998886 444322 222345788888888874 4432111012
Q ss_pred HHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHH
Q 023403 88 CGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALA 167 (282)
Q Consensus 88 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~ 167 (282)
...+++|+.|+++++.. +....... ...+++|++|+++++ .+...... ....+++|++|+++++ .++... ..+.
T Consensus 145 ~~~l~~L~~L~l~~n~~-~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~-~~~~ 218 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDT-FTKIQRKD-FAGLTFLEELEIDAS-DLQSYEPK-SLKSIQNVSHLILHMK-QHILLL-EIFV 218 (353)
T ss_dssp CTTCTTCCEEEEEESSS-CCEECTTT-TTTCCEEEEEEEEET-TCCEECTT-TTTTCSEEEEEEEECS-CSTTHH-HHHH
T ss_pred hccCCCCcEEECCCCcc-ccccCHHH-ccCCCCCCEEECCCC-CcCccCHH-HHhccccCCeecCCCC-ccccch-hhhh
Confidence 23477888888887521 22111111 234677788888764 34322111 1234567777777774 443222 2333
Q ss_pred hcCCCCCEEeecCC
Q 023403 168 NGCPHLRSLGLYYC 181 (282)
Q Consensus 168 ~~~~~L~~L~l~~~ 181 (282)
..+++|+.|+++++
T Consensus 219 ~~~~~L~~L~L~~n 232 (353)
T 2z80_A 219 DVTSSVECLELRDT 232 (353)
T ss_dssp HHTTTEEEEEEESC
T ss_pred hhcccccEEECCCC
Confidence 44677777777765
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.24 E-value=1.2e-14 Score=120.71 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=79.5
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHH--HHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHc
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRS--LYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 90 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 90 (282)
+++++|+++++. +. .........+++|++|+++++ .++..+ ...+. .+++|++|+++++ .+.. +......
T Consensus 28 ~~l~~L~L~~n~--l~-~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~-~~~~L~~L~Ls~n-~i~~--l~~~~~~ 99 (306)
T 2z66_A 28 SSATRLELESNK--LQ-SLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDF-GTTSLKYLDLSFN-GVIT--MSSNFLG 99 (306)
T ss_dssp TTCCEEECCSSC--CC-CCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHH-SCSCCCEEECCSC-SEEE--EEEEEET
T ss_pred CCCCEEECCCCc--cC-ccCHhHhhccccCCEEECCCC-ccCcccCcccccc-cccccCEEECCCC-cccc--ChhhcCC
Confidence 577888887653 22 111222345677888888775 343211 11222 3677888887764 2221 1111224
Q ss_pred CCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcC
Q 023403 91 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 170 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 170 (282)
+++|+.|+++++. +...........+++|+.|+++++ .+.... ......+++|++|+++++ .+++..+......+
T Consensus 100 l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l 174 (306)
T 2z66_A 100 LEQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDISHT-HTRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTEL 174 (306)
T ss_dssp CTTCCEEECTTSE--EESSTTTTTTTTCTTCCEEECTTS-CCEECS-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTC
T ss_pred CCCCCEEECCCCc--ccccccchhhhhccCCCEEECCCC-cCCccc-hhhcccCcCCCEEECCCC-ccccccchhHHhhC
Confidence 6777777777743 333221112234667777777664 232211 111234567777777774 44321122223345
Q ss_pred CCCCEEeecCC
Q 023403 171 PHLRSLGLYYC 181 (282)
Q Consensus 171 ~~L~~L~l~~~ 181 (282)
++|++|++++|
T Consensus 175 ~~L~~L~Ls~n 185 (306)
T 2z66_A 175 RNLTFLDLSQC 185 (306)
T ss_dssp TTCCEEECTTS
T ss_pred cCCCEEECCCC
Confidence 67777777765
No 28
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.23 E-value=4.8e-13 Score=111.75 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=81.4
Q ss_pred HHHHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHH
Q 023403 5 VLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHAL 84 (282)
Q Consensus 5 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 84 (282)
+..+...+++|+.|+++++ .++..... ....+++|++|++++|. ++... . +..+++|++|+++++ .++..
T Consensus 26 ~~~~~~~~~~L~~L~L~~n--~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~Ls~n-~l~~l-- 95 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGN--PLSQISAA-DLAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNN-YVQEL-- 95 (317)
T ss_dssp HHHHHTTGGGCSEEECTTS--CCCCCCHH-HHTTCTTCCEEECTTSC-CEEEE--E-ETTCTTCCEEECCSS-EEEEE--
T ss_pred HHHHhccCCCCCEEECcCC--ccCcCCHH-HhhCCCcCCEEECCCCc-CCcch--h-hhhcCCCCEEECcCC-ccccc--
Confidence 3455566678888888876 33322222 22457788888888763 33211 1 234678888888774 33211
Q ss_pred HHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHH
Q 023403 85 AYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVI 164 (282)
Q Consensus 85 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~ 164 (282)
...++|+.|+++++. ++... ...+++|++|+++++ .++..... ....+++|++|+++++ .++.....
T Consensus 96 ----~~~~~L~~L~l~~n~--l~~~~----~~~~~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~ 162 (317)
T 3o53_A 96 ----LVGPSIETLHAANNN--ISRVS----CSRGQGKKNIYLANN-KITMLRDL-DEGCRSRVQYLDLKLN-EIDTVNFA 162 (317)
T ss_dssp ----EECTTCCEEECCSSC--CSEEE----ECCCSSCEEEECCSS-CCCSGGGB-CTGGGSSEEEEECTTS-CCCEEEGG
T ss_pred ----cCCCCcCEEECCCCc--cCCcC----ccccCCCCEEECCCC-CCCCccch-hhhccCCCCEEECCCC-CCCcccHH
Confidence 124667777766643 33211 112456677777663 34331111 1123466777777763 44432223
Q ss_pred HHHhcCCCCCEEeecCCC
Q 023403 165 ALANGCPHLRSLGLYYCR 182 (282)
Q Consensus 165 ~l~~~~~~L~~L~l~~~~ 182 (282)
.+...+++|++|++++|.
T Consensus 163 ~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp GGGGGTTTCCEEECTTSC
T ss_pred HHhhccCcCCEEECCCCc
Confidence 333345667777776653
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.22 E-value=3.4e-13 Score=114.34 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=85.4
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 92 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 92 (282)
++|+.|+++++. ++... ......+++|++|++++| .++...... +..+++|++|+++++ .++.... .....++
T Consensus 52 ~~L~~L~l~~n~--i~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNR--ITYIS-NSDLQRCVNLQALVLTSN-GINTIEEDS-FSSLGSLEHLDLSYN-YLSNLSS-SWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSC--CCEEC-TTTTTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCSSCCH-HHHTTCT
T ss_pred ccCcEEECCCCc--CcccC-HHHhccCCCCCEEECCCC-ccCccCHhh-cCCCCCCCEEECCCC-cCCcCCH-hHhCCCc
Confidence 478888888753 33211 112245678888888876 444322111 234678888888774 4432211 1123477
Q ss_pred CCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCC
Q 023403 93 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH 172 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 172 (282)
+|++|+++++. +...........+++|++|+++++..+..... .....+++|++|+++++ .++... ......+++
T Consensus 125 ~L~~L~L~~n~--l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~-~~~l~~l~~ 199 (353)
T 2z80_A 125 SLTFLNLLGNP--YKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDAS-DLQSYE-PKSLKSIQN 199 (353)
T ss_dssp TCSEEECTTCC--CSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEET-TCCEEC-TTTTTTCSE
T ss_pred cCCEEECCCCC--CcccCchhhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCC-CcCccC-HHHHhcccc
Confidence 88888887743 43211101223467788888877533332111 11235677888888774 443221 112234677
Q ss_pred CCEEeecCCC
Q 023403 173 LRSLGLYYCR 182 (282)
Q Consensus 173 L~~L~l~~~~ 182 (282)
|++|+++++.
T Consensus 200 L~~L~l~~n~ 209 (353)
T 2z80_A 200 VSHLILHMKQ 209 (353)
T ss_dssp EEEEEEECSC
T ss_pred CCeecCCCCc
Confidence 8888888764
No 30
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.22 E-value=3.2e-14 Score=117.03 Aligned_cols=196 Identities=19% Similarity=0.115 Sum_probs=124.4
Q ss_pred HHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHH
Q 023403 7 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY 86 (282)
Q Consensus 7 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 86 (282)
..+..+++|+.|+++++ .+...... ....+++|++|++++|..++...... +..+++|++|+++++ .+..... .
T Consensus 50 ~~~~~~~~L~~L~l~~n--~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~ 123 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSN--VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLHTLHLDRC-GLQELGP-G 123 (285)
T ss_dssp TTTTTCTTCCEEECCSS--CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTT-TTTCTTCCEEECTTS-CCCCCCT-T
T ss_pred HHcccCCCCCEEECCCC--ccceeCHh-hcCCccCCCEEeCCCCCCccccCHHH-hcCCcCCCEEECCCC-cCCEECH-h
Confidence 34678999999999986 33321111 23457899999999974344322222 235899999999985 4432111 1
Q ss_pred HHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHH
Q 023403 87 LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL 166 (282)
Q Consensus 87 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l 166 (282)
....+++|+.|+++++. +....... ...+++|+.|+++++ .++.... .....++.|++|+++++ .+++.....
T Consensus 124 ~~~~l~~L~~L~l~~n~--l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~- 196 (285)
T 1ozn_A 124 LFRGLAALQYLYLQDNA--LQALPDDT-FRDLGNLTHLFLHGN-RISSVPE-RAFRGLHSLDRLLLHQN-RVAHVHPHA- 196 (285)
T ss_dssp TTTTCTTCCEEECCSSC--CCCCCTTT-TTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCCEECTTT-
T ss_pred HhhCCcCCCEEECCCCc--ccccCHhH-hccCCCccEEECCCC-cccccCH-HHhcCccccCEEECCCC-cccccCHhH-
Confidence 22457899999999854 44322211 235789999999985 4553211 12335789999999995 555332222
Q ss_pred HhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHH
Q 023403 167 ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQA 234 (282)
Q Consensus 167 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 234 (282)
+..+++|+.|+++++. ++......+.. +++|++|++++++...+....+
T Consensus 197 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~------------------l~~L~~L~l~~N~~~c~~~~~~ 245 (285)
T 1ozn_A 197 FRDLGRLMTLYLFANN-LSALPTEALAP------------------LRALQYLRLNDNPWVCDCRARP 245 (285)
T ss_dssp TTTCTTCCEEECCSSC-CSCCCHHHHTT------------------CTTCCEEECCSSCEECSGGGHH
T ss_pred ccCcccccEeeCCCCc-CCcCCHHHccc------------------CcccCEEeccCCCccCCCCcHH
Confidence 2457899999999974 54322233332 2899999999976554444433
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.22 E-value=1.1e-13 Score=116.17 Aligned_cols=202 Identities=21% Similarity=0.269 Sum_probs=131.5
Q ss_pred ccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHH-
Q 023403 9 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL- 87 (282)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~- 87 (282)
+.++++|++|+++++. +. .... ....+++|++|++++| .++ .++..+..+++|++|++++|........ .+
T Consensus 100 l~~l~~L~~L~L~~n~--l~-~lp~-~~~~l~~L~~L~Ls~n-~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~-~~~ 171 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAG--LM-ELPD-TMQQFAGLETLTLARN-PLR--ALPASIASLNRLRELSIRACPELTELPE-PLA 171 (328)
T ss_dssp GGGGTTCSEEEEESSC--CC-CCCS-CGGGGTTCSEEEEESC-CCC--CCCGGGGGCTTCCEEEEEEETTCCCCCS-CSE
T ss_pred hhhCCCCCEEECCCCC--cc-chhH-HHhccCCCCEEECCCC-ccc--cCcHHHhcCcCCCEEECCCCCCccccCh-hHh
Confidence 4568999999999874 33 1212 2255789999999997 444 2232344689999999998654422110 01
Q ss_pred -------HHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCH
Q 023403 88 -------CGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITD 160 (282)
Q Consensus 88 -------~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 160 (282)
...+++|+.|+++++. ++. +......+++|++|++++| .+.. +......+++|++|++++|....
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n~--l~~--lp~~l~~l~~L~~L~L~~N-~l~~--l~~~l~~l~~L~~L~Ls~n~~~~- 243 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWTG--IRS--LPASIANLQNLKSLKIRNS-PLSA--LGPAIHHLPKLEELDLRGCTALR- 243 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEEC--CCC--CCGGGGGCTTCCEEEEESS-CCCC--CCGGGGGCTTCCEEECTTCTTCC-
T ss_pred hccchhhhccCCCCCEEECcCCC--cCc--chHhhcCCCCCCEEEccCC-CCCc--CchhhccCCCCCEEECcCCcchh-
Confidence 1237899999999854 441 1122346899999999985 4543 11124468999999999964332
Q ss_pred HHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCC
Q 023403 161 DSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP 240 (282)
Q Consensus 161 ~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 240 (282)
. +......+++|++|++++|..... .... ...+++|++|++++|+.++ ..|
T Consensus 244 ~-~p~~~~~l~~L~~L~L~~n~~~~~-~p~~------------------~~~l~~L~~L~L~~n~~~~---------~iP 294 (328)
T 4fcg_A 244 N-YPPIFGGRAPLKRLILKDCSNLLT-LPLD------------------IHRLTQLEKLDLRGCVNLS---------RLP 294 (328)
T ss_dssp B-CCCCTTCCCCCCEEECTTCTTCCB-CCTT------------------GGGCTTCCEEECTTCTTCC---------CCC
T ss_pred h-hHHHhcCCCCCCEEECCCCCchhh-cchh------------------hhcCCCCCEEeCCCCCchh---------hcc
Confidence 1 222334689999999999864331 0001 2234899999999987664 233
Q ss_pred -CCccCCCcceeeecC
Q 023403 241 -ALHTCSGRHSLVMSG 255 (282)
Q Consensus 241 -~l~~~~~L~~L~l~~ 255 (282)
.+..+++|+.+.+..
T Consensus 295 ~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 295 SLIAQLPANCIILVPP 310 (328)
T ss_dssp GGGGGSCTTCEEECCG
T ss_pred HHHhhccCceEEeCCH
Confidence 355778888888774
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.22 E-value=1e-13 Score=122.29 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=9.9
Q ss_pred ccCCCcceeeecCCC
Q 023403 243 HTCSGRHSLVMSGCL 257 (282)
Q Consensus 243 ~~~~~L~~L~l~~c~ 257 (282)
..+++|+.|+++++.
T Consensus 269 ~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 269 HELLRLQEIQLVGGQ 283 (477)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cccccCCEEECCCCc
Confidence 455677777777664
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.21 E-value=7.3e-15 Score=122.11 Aligned_cols=213 Identities=16% Similarity=0.088 Sum_probs=130.9
Q ss_pred HccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHH
Q 023403 8 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 87 (282)
Q Consensus 8 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 87 (282)
.++++++|+.|+++++.....+.....+ ..+++|++|++++| .+.. +...+..+++|++|+++++ .+........
T Consensus 47 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n-~i~~--l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 121 (306)
T 2z66_A 47 VFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFN-GVIT--MSSNFLGLEQLEHLDFQHS-NLKQMSEFSV 121 (306)
T ss_dssp TTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSC-SEEE--EEEEEETCTTCCEEECTTS-EEESSTTTTT
T ss_pred HhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCC-cccc--ChhhcCCCCCCCEEECCCC-cccccccchh
Confidence 4678999999999987322111001112 24789999999997 3332 1111235899999999985 3322111112
Q ss_pred HHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHH
Q 023403 88 CGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALA 167 (282)
Q Consensus 88 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~ 167 (282)
...+++|+.|+++++. +....... ...+++|++|++.++ .+.+..+......+++|++|++++| .+++... ..+
T Consensus 122 ~~~l~~L~~L~l~~n~--l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~ 195 (306)
T 2z66_A 122 FLSLRNLIYLDISHTH--TRVAFNGI-FNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAF 195 (306)
T ss_dssp TTTCTTCCEEECTTSC--CEECSTTT-TTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTT
T ss_pred hhhccCCCEEECCCCc--CCccchhh-cccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCH-HHh
Confidence 3457899999999864 44322222 235789999999985 4443112223346789999999995 5553211 223
Q ss_pred hcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccC-C
Q 023403 168 NGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTC-S 246 (282)
Q Consensus 168 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~-~ 246 (282)
..+++|++|++++|. ++...... ...+++|++|++++| .++.... ..+..+ +
T Consensus 196 ~~l~~L~~L~L~~N~-l~~~~~~~------------------~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~~~~ 248 (306)
T 2z66_A 196 NSLSSLQVLNMSHNN-FFSLDTFP------------------YKCLNSLQVLDYSLN-HIMTSKK-------QELQHFPS 248 (306)
T ss_dssp TTCTTCCEEECTTSC-CSBCCSGG------------------GTTCTTCCEEECTTS-CCCBCSS-------SSCCCCCT
T ss_pred cCCCCCCEEECCCCc-cCccChhh------------------ccCcccCCEeECCCC-CCcccCH-------HHHHhhhc
Confidence 457899999999974 33211001 123489999999995 5543211 123455 4
Q ss_pred CcceeeecCCCC
Q 023403 247 GRHSLVMSGCLN 258 (282)
Q Consensus 247 ~L~~L~l~~c~~ 258 (282)
+|+.|++++++.
T Consensus 249 ~L~~L~L~~N~~ 260 (306)
T 2z66_A 249 SLAFLNLTQNDF 260 (306)
T ss_dssp TCCEEECTTCCE
T ss_pred cCCEEEccCCCe
Confidence 899999999873
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.21 E-value=1.3e-11 Score=108.49 Aligned_cols=192 Identities=20% Similarity=0.180 Sum_probs=133.6
Q ss_pred ccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHH
Q 023403 9 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 88 (282)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 88 (282)
+.++++|+.|+++++....... ...+++|++|++++|. +++. .. +..+++|++|+++++ .+..... .
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n-~l~~~~~---~ 261 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQ-LKDI--GT-LASLTNLTDLDLANN-QISNLAP---L 261 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG-----GGGCTTCCEEECCSSC-CCCC--GG-GGGCTTCSEEECCSS-CCCCCGG---G
T ss_pred hccCCCCCEEEecCCccccccc-----ccccCCCCEEECCCCC-cccc--hh-hhcCCCCCEEECCCC-ccccchh---h
Confidence 5678999999999874322211 3558999999999974 4432 22 345899999999986 4432211 3
Q ss_pred HcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHh
Q 023403 89 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN 168 (282)
Q Consensus 89 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 168 (282)
..+++|+.|+++++. +.+... ...+++|+.|++++| .+.+... ...+++|++|++++| .+++.. . ..
T Consensus 262 ~~l~~L~~L~l~~n~--l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~--~-~~ 328 (466)
T 1o6v_A 262 SGLTKLTELKLGANQ--ISNISP---LAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFN-NISDIS--P-VS 328 (466)
T ss_dssp TTCTTCSEEECCSSC--CCCCGG---GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSS-CCSCCG--G-GG
T ss_pred hcCCCCCEEECCCCc--cCcccc---ccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCC-cCCCch--h-hc
Confidence 568999999999964 444222 346899999999986 4543221 457899999999996 555422 2 35
Q ss_pred cCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCc
Q 023403 169 GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGR 248 (282)
Q Consensus 169 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L 248 (282)
.+++|++|++++|. +++. .. ...+++|++|++++| .+++.. | +..+++|
T Consensus 329 ~l~~L~~L~l~~n~-l~~~--~~------------------l~~l~~L~~L~l~~n-~l~~~~--------~-~~~l~~L 377 (466)
T 1o6v_A 329 SLTKLQRLFFYNNK-VSDV--SS------------------LANLTNINWLSAGHN-QISDLT--------P-LANLTRI 377 (466)
T ss_dssp GCTTCCEEECCSSC-CCCC--GG------------------GTTCTTCCEEECCSS-CCCBCG--------G-GTTCTTC
T ss_pred cCccCCEeECCCCc-cCCc--hh------------------hccCCCCCEEeCCCC-ccCccc--------h-hhcCCCC
Confidence 68999999999974 4431 11 233499999999995 454322 1 4577889
Q ss_pred ceeeecCCC
Q 023403 249 HSLVMSGCL 257 (282)
Q Consensus 249 ~~L~l~~c~ 257 (282)
+.|++++|+
T Consensus 378 ~~L~l~~n~ 386 (466)
T 1o6v_A 378 TQLGLNDQA 386 (466)
T ss_dssp CEEECCCEE
T ss_pred CEEeccCCc
Confidence 999999986
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.20 E-value=7.9e-14 Score=122.20 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=78.2
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 92 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 92 (282)
++++.|+++++ .+...... ....+++|++|+|++| .++...... +..+++|++|+++++ .+..... .....++
T Consensus 75 ~~l~~L~L~~n--~i~~~~~~-~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMEN--NIQMIQAD-TFRHLHHLEVLQLGRN-SIRQIEVGA-FNGLASLNTLELFDN-WLTVIPS-GAFEYLS 147 (452)
T ss_dssp TTCSEEECCSS--CCCEECTT-TTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSBCCT-TTSSSCT
T ss_pred CCccEEECcCC--cCceECHH-HcCCCCCCCEEECCCC-ccCCcChhh-ccCcccCCEEECCCC-cCCccCh-hhhcccC
Confidence 46777777765 22221111 1244677788887775 343322222 234677777777764 3332111 1123466
Q ss_pred CCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCC
Q 023403 93 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH 172 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 172 (282)
+|+.|+++++. +...... .+..+++|+.|++++++.+..... .....+++|++|++++| .+++ +..+ ..+++
T Consensus 148 ~L~~L~L~~N~--l~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n-~l~~--~~~~-~~l~~ 219 (452)
T 3zyi_A 148 KLRELWLRNNP--IESIPSY-AFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMC-NIKD--MPNL-TPLVG 219 (452)
T ss_dssp TCCEEECCSCC--CCEECTT-TTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTS-CCSS--CCCC-TTCTT
T ss_pred CCCEEECCCCC--cceeCHh-HHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCC-cccc--cccc-ccccc
Confidence 77777777743 3321111 123466777777776544432111 11234566777777764 4432 1122 23566
Q ss_pred CCEEeecCC
Q 023403 173 LRSLGLYYC 181 (282)
Q Consensus 173 L~~L~l~~~ 181 (282)
|+.|++++|
T Consensus 220 L~~L~Ls~N 228 (452)
T 3zyi_A 220 LEELEMSGN 228 (452)
T ss_dssp CCEEECTTS
T ss_pred ccEEECcCC
Confidence 777777665
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.19 E-value=2.8e-13 Score=119.48 Aligned_cols=135 Identities=21% Similarity=0.186 Sum_probs=63.8
Q ss_pred HccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHH
Q 023403 8 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 87 (282)
Q Consensus 8 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 87 (282)
.+.++++|++|+++++ .+...... ....+++|++|+|++| .++.... ..+..+++|++|+++++ .+..... ..
T Consensus 51 ~~~~l~~L~~L~L~~n--~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~-~~ 123 (477)
T 2id5_A 51 EFASFPHLEELELNEN--IVSAVEPG-AFNNLFNLRTLGLRSN-RLKLIPL-GVFTGLSNLTKLDISEN-KIVILLD-YM 123 (477)
T ss_dssp TTTTCTTCCEEECTTS--CCCEECTT-TTTTCTTCCEEECCSS-CCCSCCT-TSSTTCTTCCEEECTTS-CCCEECT-TT
T ss_pred HccCCCCCCEEECCCC--ccCEeChh-hhhCCccCCEEECCCC-cCCccCc-ccccCCCCCCEEECCCC-ccccCCh-hH
Confidence 4566778888888865 33221111 1244677788887775 3332111 11234677777777764 3321111 11
Q ss_pred HHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecC
Q 023403 88 CGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCG 154 (282)
Q Consensus 88 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 154 (282)
...+++|+.|+++++. +....... ...+++|++|++.+| .+..... .....+++|+.|++++
T Consensus 124 ~~~l~~L~~L~l~~n~--l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 124 FQDLYNLKSLEVGDND--LVYISHRA-FSGLNSLEQLTLEKC-NLTSIPT-EALSHLHGLIVLRLRH 185 (477)
T ss_dssp TTTCTTCCEEEECCTT--CCEECTTS-STTCTTCCEEEEESC-CCSSCCH-HHHTTCTTCCEEEEES
T ss_pred ccccccCCEEECCCCc--cceeChhh-ccCCCCCCEEECCCC-cCcccCh-hHhcccCCCcEEeCCC
Confidence 1335666666666632 22211111 123556666666553 2332111 1122344555555554
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.18 E-value=6.8e-14 Score=126.95 Aligned_cols=162 Identities=20% Similarity=0.165 Sum_probs=75.2
Q ss_pred ccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHH-HHHH
Q 023403 9 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHA-LAYL 87 (282)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~ 87 (282)
+..+++|++|+++++ .+..... .....+++|++|++++|. +........+..+++|++|+++++ .+.... ....
T Consensus 297 l~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 371 (606)
T 3t6q_A 297 LVGLSTLKKLVLSAN--KFENLCQ-ISASNFPSLTHLSIKGNT-KRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQ 371 (606)
T ss_dssp CCSCTTCCEEECTTC--CCSBGGG-GCGGGCTTCSEEECCSCS-SCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTT
T ss_pred hcccccCCEEECccC--CcCcCch-hhhhccCcCCEEECCCCC-cccccchhhhhccCcCCEEECCCC-ccccccCcchh
Confidence 456778888888875 2322111 122446777777777763 221111111234677777777764 332211 0111
Q ss_pred HHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHH
Q 023403 88 CGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALA 167 (282)
Q Consensus 88 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~ 167 (282)
...+++|+.|+++++. +....... ...+++|++|+++++ .+...........+++|++|++++| .++... ....
T Consensus 372 ~~~l~~L~~L~l~~n~--l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~ 445 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNE--PLSLKTEA-FKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHS-LLDISS-EQLF 445 (606)
T ss_dssp TTTCTTCCEEECCSCS--CEEECTTT-TTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTC-CCBTTC-TTTT
T ss_pred cccCCCCCEEECCCCc--CCcCCHHH-hcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCC-ccCCcC-HHHH
Confidence 2345667777776643 32211111 123556666666653 2221111111224455666666653 332211 1112
Q ss_pred hcCCCCCEEeecCC
Q 023403 168 NGCPHLRSLGLYYC 181 (282)
Q Consensus 168 ~~~~~L~~L~l~~~ 181 (282)
..+++|++|++++|
T Consensus 446 ~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 446 DGLPALQHLNLQGN 459 (606)
T ss_dssp TTCTTCCEEECTTC
T ss_pred hCCCCCCEEECCCC
Confidence 23555666666554
No 38
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.18 E-value=1.1e-12 Score=115.90 Aligned_cols=155 Identities=16% Similarity=0.091 Sum_probs=86.1
Q ss_pred HHHHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHH
Q 023403 5 VLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHAL 84 (282)
Q Consensus 5 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 84 (282)
+..+...+++|+.|+++++ .++.... .....+++|++|+|++|. ++.... +..+++|++|++++| .++..
T Consensus 26 l~~l~~~~~~L~~L~Ls~n--~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l-- 95 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGN--PLSQISA-ADLAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQEL-- 95 (487)
T ss_dssp HHTTSTTGGGCCEEECCSS--CCCCCCG-GGGTTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSS-EEEEE--
T ss_pred HHHhcccCCCccEEEeeCC--cCCCCCH-HHHhCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCC-cCCCC--
Confidence 3444455668999999986 3332111 223557889999999873 432111 345788899988875 33221
Q ss_pred HHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHH
Q 023403 85 AYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVI 164 (282)
Q Consensus 85 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~ 164 (282)
...++|+.|+++++. ++.... ..+++|+.|++++| .+++.... ....++.|+.|++++| .+++....
T Consensus 96 ----~~~~~L~~L~L~~N~--l~~~~~----~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~ 162 (487)
T 3oja_A 96 ----LVGPSIETLHAANNN--ISRVSC----SRGQGKKNIYLANN-KITMLRDL-DEGCRSRVQYLDLKLN-EIDTVNFA 162 (487)
T ss_dssp ----EECTTCCEEECCSSC--CCCEEE----CCCSSCEEEECCSS-CCCSGGGB-CGGGGSSEEEEECTTS-CCCEEEGG
T ss_pred ----CCCCCcCEEECcCCc--CCCCCc----cccCCCCEEECCCC-CCCCCCch-hhcCCCCCCEEECCCC-CCCCcChH
Confidence 124677777777643 332111 13466777777664 34432111 1124566777777763 55433333
Q ss_pred HHHhcCCCCCEEeecCCC
Q 023403 165 ALANGCPHLRSLGLYYCR 182 (282)
Q Consensus 165 ~l~~~~~~L~~L~l~~~~ 182 (282)
.+...+++|+.|++++|.
T Consensus 163 ~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp GGGGGTTTCCEEECTTSC
T ss_pred HHhhhCCcccEEecCCCc
Confidence 333345667777776653
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.18 E-value=7.2e-14 Score=122.03 Aligned_cols=154 Identities=21% Similarity=0.199 Sum_probs=70.4
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 92 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 92 (282)
++++.|+++++. +...... ....+++|++|+|++| .+....... +..+++|++|+++++ .++..... ....++
T Consensus 64 ~~l~~L~L~~n~--i~~~~~~-~~~~l~~L~~L~Ls~n-~i~~i~~~~-~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~ 136 (440)
T 3zyj_A 64 TNTRLLNLHENQ--IQIIKVN-SFKHLRHLEILQLSRN-HIRTIEIGA-FNGLANLNTLELFDN-RLTTIPNG-AFVYLS 136 (440)
T ss_dssp TTCSEEECCSCC--CCEECTT-TTSSCSSCCEEECCSS-CCCEECGGG-GTTCSSCCEEECCSS-CCSSCCTT-TSCSCS
T ss_pred CCCcEEEccCCc--CCeeCHH-HhhCCCCCCEEECCCC-cCCccChhh-ccCCccCCEEECCCC-cCCeeCHh-Hhhccc
Confidence 456667766652 2211111 1234566777777665 333222111 224667777777663 33211110 112356
Q ss_pred CCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCC
Q 023403 93 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH 172 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 172 (282)
+|+.|+++++. +...... .+..+++|++|++.+++.+..... ..+..+++|++|++++| .++. +..+ ..+++
T Consensus 137 ~L~~L~L~~N~--i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n-~l~~--~~~~-~~l~~ 208 (440)
T 3zyj_A 137 KLKELWLRNNP--IESIPSY-AFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMC-NLRE--IPNL-TPLIK 208 (440)
T ss_dssp SCCEEECCSCC--CCEECTT-TTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTS-CCSS--CCCC-TTCSS
T ss_pred cCceeeCCCCc--ccccCHH-HhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCC-cCcc--cccc-CCCcc
Confidence 66777766632 3321111 122356666666665444332111 11224556666666663 3331 1111 23456
Q ss_pred CCEEeecCC
Q 023403 173 LRSLGLYYC 181 (282)
Q Consensus 173 L~~L~l~~~ 181 (282)
|+.|++++|
T Consensus 209 L~~L~Ls~N 217 (440)
T 3zyj_A 209 LDELDLSGN 217 (440)
T ss_dssp CCEEECTTS
T ss_pred cCEEECCCC
Confidence 666666664
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.18 E-value=7.3e-14 Score=121.99 Aligned_cols=209 Identities=16% Similarity=0.144 Sum_probs=131.8
Q ss_pred HHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHH
Q 023403 7 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY 86 (282)
Q Consensus 7 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 86 (282)
..+.++++|+.|+++++. +..... .....+++|++|+|++| .++.... ..+..+++|++|+++++ .+......
T Consensus 82 ~~~~~l~~L~~L~Ls~n~--i~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~- 154 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNH--IRTIEI-GAFNGLANLNTLELFDN-RLTTIPN-GAFVYLSKLKELWLRNN-PIESIPSY- 154 (440)
T ss_dssp TTTSSCSSCCEEECCSSC--CCEECG-GGGTTCSSCCEEECCSS-CCSSCCT-TTSCSCSSCCEEECCSC-CCCEECTT-
T ss_pred HHhhCCCCCCEEECCCCc--CCccCh-hhccCCccCCEEECCCC-cCCeeCH-hHhhccccCceeeCCCC-cccccCHH-
Confidence 346789999999999873 332111 22355899999999987 4442221 12345799999999985 44321111
Q ss_pred HHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHH
Q 023403 87 LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL 166 (282)
Q Consensus 87 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l 166 (282)
....+++|+.|+++++.. +.... ...+..+++|+.|++++| .+... .. ...+++|++|++++| .++... ...
T Consensus 155 ~~~~l~~L~~L~l~~~~~-l~~i~-~~~~~~l~~L~~L~L~~n-~l~~~--~~-~~~l~~L~~L~Ls~N-~l~~~~-~~~ 226 (440)
T 3zyj_A 155 AFNRIPSLRRLDLGELKR-LSYIS-EGAFEGLSNLRYLNLAMC-NLREI--PN-LTPLIKLDELDLSGN-HLSAIR-PGS 226 (440)
T ss_dssp TTTTCTTCCEEECCCCTT-CCEEC-TTTTTTCSSCCEEECTTS-CCSSC--CC-CTTCSSCCEEECTTS-CCCEEC-TTT
T ss_pred HhhhCcccCEeCCCCCCC-cceeC-cchhhcccccCeecCCCC-cCccc--cc-cCCCcccCEEECCCC-ccCccC-hhh
Confidence 223578999999988532 22111 112345889999999985 45421 11 235789999999995 665321 122
Q ss_pred HhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCC
Q 023403 167 ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCS 246 (282)
Q Consensus 167 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~ 246 (282)
+.++++|+.|+++++. ++...... ...+++|++|++++ +.++.... ..+..++
T Consensus 227 ~~~l~~L~~L~L~~n~-l~~~~~~~------------------~~~l~~L~~L~L~~-N~l~~~~~-------~~~~~l~ 279 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQSQ-IQVIERNA------------------FDNLQSLVEINLAH-NNLTLLPH-------DLFTPLH 279 (440)
T ss_dssp TTTCTTCCEEECTTCC-CCEECTTS------------------STTCTTCCEEECTT-SCCCCCCT-------TTTSSCT
T ss_pred hccCccCCEEECCCCc-eeEEChhh------------------hcCCCCCCEEECCC-CCCCccCh-------hHhcccc
Confidence 3458899999999964 43211111 22348999999999 45652211 1134678
Q ss_pred CcceeeecCCC
Q 023403 247 GRHSLVMSGCL 257 (282)
Q Consensus 247 ~L~~L~l~~c~ 257 (282)
+|+.|++++++
T Consensus 280 ~L~~L~L~~Np 290 (440)
T 3zyj_A 280 HLERIHLHHNP 290 (440)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEcCCCC
Confidence 89999999887
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.18 E-value=7.5e-12 Score=112.12 Aligned_cols=11 Identities=45% Similarity=0.404 Sum_probs=6.5
Q ss_pred ccCcceEeccC
Q 023403 213 EEGLQSLNISQ 223 (282)
Q Consensus 213 ~~~L~~L~l~~ 223 (282)
+++|++|++++
T Consensus 360 l~~L~~L~Ls~ 370 (549)
T 2z81_A 360 WPSLQTLVLSQ 370 (549)
T ss_dssp STTCCEEECTT
T ss_pred cccCcEEEccC
Confidence 35566666666
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.17 E-value=5.9e-11 Score=106.30 Aligned_cols=175 Identities=15% Similarity=0.079 Sum_probs=81.5
Q ss_pred hCCCccEEEcCCCCCCChHHHHH--HHHcCCCCcEEeccCCCCCCHHH-HHHHHHcCCCCeEEEecCCcccccHHHHHHH
Q 023403 38 SCHDLQDLDLSKSFKLSDRSLYA--LAHGCPNLTRLNISGCTSFSDHA-LAYLCGFCRKLKILNLCGCVKAATDYALQAI 114 (282)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 114 (282)
.+++|++|++++| .+.+..+.. ....+++|++|++++| .+.... .......+++|+.|++++|. ++. +...
T Consensus 332 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~--lp~~ 405 (549)
T 2z81_A 332 HLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT--FHP--MPDS 405 (549)
T ss_dssp HCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC--CCC--CCSC
T ss_pred cCccccEEEccCC-ccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC--Ccc--CChh
Confidence 3455555555554 333322221 1123455555555553 332211 11223345555555555532 221 1111
Q ss_pred HHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHh
Q 023403 115 GRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQ 194 (282)
Q Consensus 115 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 194 (282)
...+++|+.|++++| .+.... ....+.|++|++++| .+++. ...+++|++|++++|. ++.
T Consensus 406 ~~~~~~L~~L~Ls~N-~l~~l~----~~~~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N~-l~~-------- 465 (549)
T 2z81_A 406 CQWPEKMRFLNLSST-GIRVVK----TCIPQTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRNK-LKT-------- 465 (549)
T ss_dssp CCCCTTCCEEECTTS-CCSCCC----TTSCTTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSSC-CSS--------
T ss_pred hcccccccEEECCCC-Cccccc----chhcCCceEEECCCC-Chhhh-----cccCChhcEEECCCCc-cCc--------
Confidence 122345555555553 222100 001235666666663 34321 1345666666666653 320
Q ss_pred cCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCC-CccCCCcceeeecCCCCc
Q 023403 195 SGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPA-LHTCSGRHSLVMSGCLNL 259 (282)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~-l~~~~~L~~L~l~~c~~~ 259 (282)
+.....+++|++|++++ +.++.. .+. +..+++|+.|++++++..
T Consensus 466 ------------ip~~~~l~~L~~L~Ls~-N~l~~~--------~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 466 ------------LPDASLFPVLLVMKISR-NQLKSV--------PDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp ------------CCCGGGCTTCCEEECCS-SCCCCC--------CTTGGGGCTTCCEEECCSSCBC
T ss_pred ------------CCCcccCccCCEEecCC-CccCCc--------CHHHHhcCcccCEEEecCCCcc
Confidence 11111247888888888 455431 122 456788899999888743
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.17 E-value=1.3e-12 Score=112.13 Aligned_cols=56 Identities=18% Similarity=0.096 Sum_probs=28.8
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCC
Q 023403 120 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 181 (282)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 181 (282)
+|+.|++.++ .+++. .....++.|++|+++++ .+++... .....+++|++|++++|
T Consensus 227 ~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 227 ELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYN-ELEKIMY-HPFVKMQRLERLYISNN 282 (390)
T ss_dssp SCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCEEES-GGGTTCSSCCEEECCSS
T ss_pred cccEEECCCC-CCccc---HHHcCCCCccEEECCCC-cCCCcCh-hHccccccCCEEECCCC
Confidence 4566666553 34332 12335667777777774 4442211 11233566777777665
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.17 E-value=1.1e-13 Score=121.38 Aligned_cols=209 Identities=17% Similarity=0.123 Sum_probs=130.9
Q ss_pred HHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHH
Q 023403 7 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY 86 (282)
Q Consensus 7 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 86 (282)
..+.++++|+.|+++++ .+..... .....+++|++|+|++| .++... ...+..+++|++|+++++ .+..... .
T Consensus 93 ~~~~~l~~L~~L~Ls~n--~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~-~ 165 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRN--SIRQIEV-GAFNGLASLNTLELFDN-WLTVIP-SGAFEYLSKLRELWLRNN-PIESIPS-Y 165 (452)
T ss_dssp TTTTTCTTCCEEECCSS--CCCEECT-TTTTTCTTCCEEECCSS-CCSBCC-TTTSSSCTTCCEEECCSC-CCCEECT-T
T ss_pred HHcCCCCCCCEEECCCC--ccCCcCh-hhccCcccCCEEECCCC-cCCccC-hhhhcccCCCCEEECCCC-CcceeCH-h
Confidence 34678999999999987 3332111 22345789999999987 444222 122345899999999985 4432111 1
Q ss_pred HHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHH
Q 023403 87 LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL 166 (282)
Q Consensus 87 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l 166 (282)
....+++|+.|++++|.. +..... .....+++|+.|+++++ .+.+. .. ...+++|++|++++| .++... ...
T Consensus 166 ~~~~l~~L~~L~l~~~~~-l~~i~~-~~~~~l~~L~~L~L~~n-~l~~~--~~-~~~l~~L~~L~Ls~N-~l~~~~-~~~ 237 (452)
T 3zyi_A 166 AFNRVPSLMRLDLGELKK-LEYISE-GAFEGLFNLKYLNLGMC-NIKDM--PN-LTPLVGLEELEMSGN-HFPEIR-PGS 237 (452)
T ss_dssp TTTTCTTCCEEECCCCTT-CCEECT-TTTTTCTTCCEEECTTS-CCSSC--CC-CTTCTTCCEEECTTS-CCSEEC-GGG
T ss_pred HHhcCCcccEEeCCCCCC-ccccCh-hhccCCCCCCEEECCCC-ccccc--cc-ccccccccEEECcCC-cCcccC-ccc
Confidence 224578999999988532 222111 11235789999999985 45432 11 235789999999995 554322 222
Q ss_pred HhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCC
Q 023403 167 ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCS 246 (282)
Q Consensus 167 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~ 246 (282)
+.++++|+.|+++++. ++...... ...+++|++|++++| .++.... ..+..++
T Consensus 238 ~~~l~~L~~L~L~~n~-l~~~~~~~------------------~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~l~ 290 (452)
T 3zyi_A 238 FHGLSSLKKLWVMNSQ-VSLIERNA------------------FDGLASLVELNLAHN-NLSSLPH-------DLFTPLR 290 (452)
T ss_dssp GTTCTTCCEEECTTSC-CCEECTTT------------------TTTCTTCCEEECCSS-CCSCCCT-------TSSTTCT
T ss_pred ccCccCCCEEEeCCCc-CceECHHH------------------hcCCCCCCEEECCCC-cCCccCh-------HHhcccc
Confidence 3458899999999874 43211111 223488999999984 5542111 1134678
Q ss_pred CcceeeecCCC
Q 023403 247 GRHSLVMSGCL 257 (282)
Q Consensus 247 ~L~~L~l~~c~ 257 (282)
+|+.|++++++
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 88999998886
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.16 E-value=1.1e-13 Score=125.66 Aligned_cols=229 Identities=20% Similarity=0.138 Sum_probs=129.9
Q ss_pred HccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHH
Q 023403 8 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 87 (282)
Q Consensus 8 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 87 (282)
.++.+++|+.|+++++. ++. .... ...+++|++|++++| .+....... +..+++|++|+++++....... ...
T Consensus 273 ~~~~l~~L~~L~l~~n~--l~~-lp~~-l~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~ 345 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATH--LSE-LPSG-LVGLSTLKKLVLSAN-KFENLCQIS-ASNFPSLTHLSIKGNTKRLELG-TGC 345 (606)
T ss_dssp TTTTCTTCSEEECTTSC--CSC-CCSS-CCSCTTCCEEECTTC-CCSBGGGGC-GGGCTTCSEEECCSCSSCCBCC-SST
T ss_pred HhccccCCCEEeccCCc--cCC-CChh-hcccccCCEEECccC-CcCcCchhh-hhccCcCCEEECCCCCcccccc-hhh
Confidence 36788999999999873 331 1111 245789999999987 444332222 3458999999999863221111 111
Q ss_pred HHcCCCCeEEEecCCcccccHHHH-HHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHH
Q 023403 88 CGFCRKLKILNLCGCVKAATDYAL-QAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL 166 (282)
Q Consensus 88 ~~~~~~L~~L~l~~~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l 166 (282)
...+++|+.|+++++. +..... ......+++|++|+++++ .+.+... .....+++|++|+++++ .++.......
T Consensus 346 ~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 420 (606)
T 3t6q_A 346 LENLENLRELDLSHDD--IETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKT-EAFKECPQLELLDLAFT-RLKVKDAQSP 420 (606)
T ss_dssp TTTCTTCCEEECCSSC--CCEEEESTTTTTTCTTCCEEECCSC-SCEEECT-TTTTTCTTCSEEECTTC-CEECCTTCCT
T ss_pred hhccCcCCEEECCCCc--cccccCcchhcccCCCCCEEECCCC-cCCcCCH-HHhcCCccCCeEECCCC-cCCCcccchh
Confidence 2358899999999854 443210 111235789999999985 3432211 12335789999999995 4432222222
Q ss_pred HhcCCCCCEEeecCCCCCcHHHHHHHHhcC----cCCCCcchhc-----ccccCcccCcceEeccCCCCCCHHHHHHHHh
Q 023403 167 ANGCPHLRSLGLYYCRNITDRAIYSLAQSG----VKNKPGIWES-----MKGRYDEEGLQSLNISQCTALTPPAVQALCD 237 (282)
Q Consensus 167 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~----~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 237 (282)
...+++|+.|++++|. ++......+.... +......+.. ......+++|++|++++| .++....
T Consensus 421 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~----- 493 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ----- 493 (606)
T ss_dssp TTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECT-----
T ss_pred hhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccCh-----
Confidence 3468899999999974 4322111111110 0000011111 011345567777777774 3432111
Q ss_pred hCCCCccCCCcceeeecCCC
Q 023403 238 TFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 238 ~~~~l~~~~~L~~L~l~~c~ 257 (282)
..+..+++|+.|++++|.
T Consensus 494 --~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 494 --HAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp --TTTTTCTTCCEEECCSSC
T ss_pred --hhhccccCCCEEECCCCc
Confidence 123456777777777774
No 46
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.15 E-value=1.1e-11 Score=103.18 Aligned_cols=211 Identities=18% Similarity=0.140 Sum_probs=118.9
Q ss_pred CccEEEccCCCCCCcHHHHHHHHh--hCCCccEEEcCCCCCCChHHHHHHH-HcCCCCcEEeccCCCCCCH----HHHHH
Q 023403 14 KLQTLVLRQDKPQLEDNAVEAIAN--SCHDLQDLDLSKSFKLSDRSLYALA-HGCPNLTRLNISGCTSFSD----HALAY 86 (282)
Q Consensus 14 ~L~~L~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~----~~~~~ 86 (282)
.++.+.+.+. .+++..+..+.. .+++|++|++++|. +.......++ ..+++|++|+++++ .+.. .....
T Consensus 65 ~l~~l~l~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~ 140 (310)
T 4glp_A 65 RVRRLTVGAA--QVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQ 140 (310)
T ss_dssp CCCEEEECSC--CCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHH
T ss_pred ceeEEEEeCC--cCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHH
Confidence 4677777765 555554444332 24679999998863 3322222221 35788999999885 4432 11122
Q ss_pred HHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCH-HHHHHH--HhcCCCCcEEEecCCCccC--HH
Q 023403 87 LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGD-VGVMNL--AYGCPDLRSLDLCGCVCIT--DD 161 (282)
Q Consensus 87 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l--~~~~~~L~~L~l~~~~~l~--~~ 161 (282)
+. .+++|+.|+++++. +....... ...+++|++|+++++ .+.. ..+... ...+++|++|++++| .++ ..
T Consensus 141 ~~-~~~~L~~L~Ls~n~--l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 214 (310)
T 4glp_A 141 QW-LKPGLKVLSIAQAH--SPAFSCEQ-VRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTG 214 (310)
T ss_dssp TT-BCSCCCEEEEECCS--SCCCCTTS-CCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHH
T ss_pred hh-hccCCCEEEeeCCC--cchhhHHH-hccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHH
Confidence 22 57899999998854 43322111 234688999999885 3443 222211 135688999999985 665 22
Q ss_pred HHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCC
Q 023403 162 SVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPA 241 (282)
Q Consensus 162 ~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 241 (282)
....+...+++|++|++++|. ++......+ .....+++|++|++++ +.++. .|.
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~---------------~~~~~~~~L~~L~Ls~-N~l~~---------lp~ 268 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNS-LRATVNPSA---------------PRCMWSSALNSLNLSF-AGLEQ---------VPK 268 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSC-CCCCCCSCC---------------SSCCCCTTCCCEECCS-SCCCS---------CCS
T ss_pred HHHHHHhcCCCCCEEECCCCC-CCccchhhH---------------HhccCcCcCCEEECCC-CCCCc---------hhh
Confidence 223345567899999998864 332100000 0011125788888877 44541 122
Q ss_pred CccCCCcceeeecCCCCccch
Q 023403 242 LHTCSGRHSLVMSGCLNLTSV 262 (282)
Q Consensus 242 l~~~~~L~~L~l~~c~~~~~~ 262 (282)
- -.++|+.|+++++. ++++
T Consensus 269 ~-~~~~L~~L~Ls~N~-l~~~ 287 (310)
T 4glp_A 269 G-LPAKLRVLDLSSNR-LNRA 287 (310)
T ss_dssp C-CCSCCSCEECCSCC-CCSC
T ss_pred h-hcCCCCEEECCCCc-CCCC
Confidence 1 12677778877775 5543
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.15 E-value=1.6e-14 Score=120.60 Aligned_cols=209 Identities=15% Similarity=0.065 Sum_probs=121.3
Q ss_pred HHHHccCCCCccEEEccC-CCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHH
Q 023403 5 VLSLAPKLTKLQTLVLRQ-DKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHA 83 (282)
Q Consensus 5 ~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 83 (282)
++..+.++++|+.|++++ + .+.+..... ...+++|++|++++| .++...... +..+++|++|+++++ .+...
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n--~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~- 140 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGIN--NLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYN-ALSGT- 140 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEET--TEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSS-EEESC-
T ss_pred cChhHhCCCCCCeeeCCCCC--cccccCChh-HhcCCCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCC-ccCCc-
Confidence 445677899999999984 3 222222222 245889999999986 343222222 235899999999885 33211
Q ss_pred HHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCC-CCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHH
Q 023403 84 LAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN-QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDS 162 (282)
Q Consensus 84 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 162 (282)
+......+++|+.|+++++. +++.....+. .++ +|+.|+++++ .+....... ...++ |++|+++++ .+++.
T Consensus 141 ~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l~-~l~~~L~~L~L~~N-~l~~~~~~~-~~~l~-L~~L~Ls~N-~l~~~- 212 (313)
T 1ogq_A 141 LPPSISSLPNLVGITFDGNR--ISGAIPDSYG-SFSKLFTSMTISRN-RLTGKIPPT-FANLN-LAFVDLSRN-MLEGD- 212 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSC--CEEECCGGGG-CCCTTCCEEECCSS-EEEEECCGG-GGGCC-CSEEECCSS-EEEEC-
T ss_pred CChHHhcCCCCCeEECcCCc--ccCcCCHHHh-hhhhcCcEEECcCC-eeeccCChH-HhCCc-ccEEECcCC-cccCc-
Confidence 11122458899999999854 5433333333 355 8999999875 343211111 22344 899999885 44422
Q ss_pred HHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCC-C
Q 023403 163 VIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP-A 241 (282)
Q Consensus 163 l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~-~ 241 (282)
....+..+++|+.|+++++. ++.. +.....+++|++|++++| .+++. .| .
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~-l~~~-------------------~~~~~~l~~L~~L~Ls~N-~l~~~--------~p~~ 263 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNS-LAFD-------------------LGKVGLSKNLNGLDLRNN-RIYGT--------LPQG 263 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSE-ECCB-------------------GGGCCCCTTCCEEECCSS-CCEEC--------CCGG
T ss_pred CCHHHhcCCCCCEEECCCCc-eeee-------------------cCcccccCCCCEEECcCC-cccCc--------CChH
Confidence 12233457888999988864 3210 000122377888888773 44321 12 2
Q ss_pred CccCCCcceeeecCCC
Q 023403 242 LHTCSGRHSLVMSGCL 257 (282)
Q Consensus 242 l~~~~~L~~L~l~~c~ 257 (282)
+..+++|+.|+++++.
T Consensus 264 l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNN 279 (313)
T ss_dssp GGGCTTCCEEECCSSE
T ss_pred HhcCcCCCEEECcCCc
Confidence 3456677777777775
No 48
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.14 E-value=1.5e-12 Score=108.41 Aligned_cols=203 Identities=18% Similarity=0.157 Sum_probs=129.3
Q ss_pred CCCccEEEccCCCCCCcHHHHHHHH-hhCCCccEEEcCCCCCCChH----HHHHHHHcCCCCcEEeccCCCCCCHHHHHH
Q 023403 12 LTKLQTLVLRQDKPQLEDNAVEAIA-NSCHDLQDLDLSKSFKLSDR----SLYALAHGCPNLTRLNISGCTSFSDHALAY 86 (282)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 86 (282)
+++|++|+++++. +.......+. ..+++|++|++++| .++.. ....+. .+++|++|+++++ .+......
T Consensus 90 ~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n-~l~~~~~~- 163 (310)
T 4glp_A 90 YSRLKELTLEDLK--ITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQW-LKPGLKVLSIAQA-HSPAFSCE- 163 (310)
T ss_dssp HSCCCEEEEESCC--CBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTT-BCSCCCEEEEECC-SSCCCCTT-
T ss_pred cCceeEEEeeCCE--eccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhh-hccCCCEEEeeCC-CcchhhHH-
Confidence 4679999999873 3322222221 45789999999997 44431 112223 5899999999985 44322111
Q ss_pred HHHcCCCCeEEEecCCcccccHH-HHHH--HHHhCCCCCEEEecCCCCCCH--HHHHHHHhcCCCCcEEEecCCCccCHH
Q 023403 87 LCGFCRKLKILNLCGCVKAATDY-ALQA--IGRNCNQLQSLNLGWCEDVGD--VGVMNLAYGCPDLRSLDLCGCVCITDD 161 (282)
Q Consensus 87 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~--l~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~l~~~ 161 (282)
....+++|+.|+++++. +... .+.. ....+++|++|++++| .++. .....+...++.|++|++++| .+++.
T Consensus 164 ~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~ 239 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNP--GLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN-SLRAT 239 (310)
T ss_dssp SCCCCTTCCEEECCSCT--TCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCC
T ss_pred HhccCCCCCEEECCCCC--CccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC-CCCcc
Confidence 22357899999999954 4443 2221 1135789999999986 4652 223334457789999999995 56532
Q ss_pred HHHHHHhcC---CCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhh
Q 023403 162 SVIALANGC---PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDT 238 (282)
Q Consensus 162 ~l~~l~~~~---~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 238 (282)
....+ ..+ ++|++|++++|. ++. +... ..++|++|++++ +.++.
T Consensus 240 ~p~~~-~~~~~~~~L~~L~Ls~N~-l~~-----lp~~----------------~~~~L~~L~Ls~-N~l~~--------- 286 (310)
T 4glp_A 240 VNPSA-PRCMWSSALNSLNLSFAG-LEQ-----VPKG----------------LPAKLRVLDLSS-NRLNR--------- 286 (310)
T ss_dssp CCSCC-SSCCCCTTCCCEECCSSC-CCS-----CCSC----------------CCSCCSCEECCS-CCCCS---------
T ss_pred chhhH-HhccCcCcCCEEECCCCC-CCc-----hhhh----------------hcCCCCEEECCC-CcCCC---------
Confidence 11111 123 699999999974 431 1110 127999999999 56652
Q ss_pred CCCCccCCCcceeeecCCC
Q 023403 239 FPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 239 ~~~l~~~~~L~~L~l~~c~ 257 (282)
.|.+..+++|+.|++++++
T Consensus 287 ~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 287 APQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCTTSCCCCSCEECSSTT
T ss_pred CchhhhCCCccEEECcCCC
Confidence 2344577899999999987
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.14 E-value=4.9e-12 Score=105.37 Aligned_cols=205 Identities=19% Similarity=0.155 Sum_probs=90.0
Q ss_pred CCCCccEEEccCCCCCCcHHHHHHH-HhhCCCccEEEcCCCCCCChH--HHHHHHH-cCCCCcEEeccCCCCCCHHHHHH
Q 023403 11 KLTKLQTLVLRQDKPQLEDNAVEAI-ANSCHDLQDLDLSKSFKLSDR--SLYALAH-GCPNLTRLNISGCTSFSDHALAY 86 (282)
Q Consensus 11 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~ 86 (282)
.+++|++|+++++. +++.....+ ...+++|++|++++| .++.. .+..+.. ..++|++|+++++ .+......
T Consensus 93 ~l~~L~~L~L~~n~--l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~- 167 (312)
T 1wwl_A 93 GISGLQELTLENLE--VTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCE- 167 (312)
T ss_dssp TTSCCCEEEEEEEB--CBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTT-
T ss_pred CcCCccEEEccCCc--ccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHH-
Confidence 46667777776652 221111111 134566777777665 33322 1111110 0166666666663 33221111
Q ss_pred HHHcCCCCeEEEecCCcccccHH-HH-HHH-HHhCCCCCEEEecCCCCCCH--HHHHHHHhcCCCCcEEEecCCCccCHH
Q 023403 87 LCGFCRKLKILNLCGCVKAATDY-AL-QAI-GRNCNQLQSLNLGWCEDVGD--VGVMNLAYGCPDLRSLDLCGCVCITDD 161 (282)
Q Consensus 87 ~~~~~~~L~~L~l~~~~~~~~~~-~~-~~l-~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~l~~~ 161 (282)
....+++|+.|+++++. +.+. .. ..+ ...+++|++|+++++ .++. .....+...+++|++|+++++ .+++.
T Consensus 168 ~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~ 243 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNP--ELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDA 243 (312)
T ss_dssp TCCCCSSCCEEECCSCT--TCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSS
T ss_pred HhccCCCCCEEECCCCC--cCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcc
Confidence 11235666666666632 3332 11 111 134566666666664 3442 122233345566666666663 44331
Q ss_pred HHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcC---cCCCCcchhcccccCcccCcceEeccCCCCCC
Q 023403 162 SVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSG---VKNKPGIWESMKGRYDEEGLQSLNISQCTALT 228 (282)
Q Consensus 162 ~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 228 (282)
........+++|++|++++|. ++. ....+. .. +....-.+..+.....+++|++|+++++ .++
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~-l~~-ip~~~~-~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N-~l~ 309 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTG-LKQ-VPKGLP-AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGN-PFL 309 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSC-CSS-CCSSCC-SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTC-TTT
T ss_pred cchhhhhhcCCCCEEECCCCc-cCh-hhhhcc-CCceEEECCCCCCCCChhHhhCCCCCEEeccCC-CCC
Confidence 100111224566666666653 321 000000 00 0001111122222445699999999994 454
No 50
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.14 E-value=2.2e-10 Score=96.99 Aligned_cols=213 Identities=16% Similarity=0.109 Sum_probs=138.4
Q ss_pred CCccEEEccCCCCC--CcHHHHHHHH---hhCCCccEEEcCCCCC----C---ChHHHHHHHHcCCCCcEEeccCCCCCC
Q 023403 13 TKLQTLVLRQDKPQ--LEDNAVEAIA---NSCHDLQDLDLSKSFK----L---SDRSLYALAHGCPNLTRLNISGCTSFS 80 (282)
Q Consensus 13 ~~L~~L~l~~~~~~--~~~~~~~~~~---~~~~~L~~L~l~~~~~----~---~~~~~~~~~~~~~~L~~L~l~~~~~~~ 80 (282)
+.++.|.+...... .....+..+. ..+++|++|.+.+... + ....+..+...+|+|++|.++++..+.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 35677776643211 1113344442 3578999999975311 1 011355666778999999998863332
Q ss_pred HHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHH-hCCCCCEEEecCCCC-C-CH---HHHHHHH--hcCCCCcEEEe
Q 023403 81 DHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR-NCNQLQSLNLGWCED-V-GD---VGVMNLA--YGCPDLRSLDL 152 (282)
Q Consensus 81 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~-~-~~---~~~~~l~--~~~~~L~~L~l 152 (282)
-. .+ ..++|+.|++..|. ++.+.+..+.. .+|+|++|++..+.. . .+ ..+..+. ..+|+|+.|++
T Consensus 187 l~---~~--~~~~L~~L~L~~~~--l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L 259 (362)
T 2ra8_A 187 IG---KK--PRPNLKSLEIISGG--LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259 (362)
T ss_dssp CC---SC--BCTTCSEEEEECSB--CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred ec---cc--cCCCCcEEEEecCC--CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence 11 11 36899999999865 78888877764 589999999853211 1 11 1122222 24789999999
Q ss_pred cCCCccCHHHHHHHHh--cCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHH
Q 023403 153 CGCVCITDDSVIALAN--GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPP 230 (282)
Q Consensus 153 ~~~~~l~~~~l~~l~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 230 (282)
.+| .+.+.....+.+ .++.|+.|+++.+ .+++.+...+... +..+++|+.|++++| .+++.
T Consensus 260 ~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~--------------L~~l~~L~~L~L~~n-~i~d~ 322 (362)
T 2ra8_A 260 VDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDH--------------VDKIKHLKFINMKYN-YLSDE 322 (362)
T ss_dssp ESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTT--------------HHHHTTCSEEECCSB-BCCHH
T ss_pred CCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhh--------------cccCCcceEEECCCC-cCCHH
Confidence 985 666655555554 4578999999875 6888877776543 223489999999985 69999
Q ss_pred HHHHHHhhCCCCccCCCcceeeecCCC
Q 023403 231 AVQALCDTFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 231 ~~~~l~~~~~~l~~~~~L~~L~l~~c~ 257 (282)
.+..+.+.++ ..+++++-.
T Consensus 323 ~~~~l~~alg--------~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSLP--------MKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHCC--------SEEECCSBC
T ss_pred HHHHHHHHcC--------CEEEecCCc
Confidence 9999987551 346666554
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.13 E-value=3.6e-12 Score=106.95 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=23.3
Q ss_pred ccCcceEeccCCCCCCHHHHHHHHhhCC-CCccCCCcceeeecCCCCccch
Q 023403 213 EEGLQSLNISQCTALTPPAVQALCDTFP-ALHTCSGRHSLVMSGCLNLTSV 262 (282)
Q Consensus 213 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~-~l~~~~~L~~L~l~~c~~~~~~ 262 (282)
+++|++|++++| .++ ..| .+..+++|++|++++|. ++++
T Consensus 239 l~~L~~L~L~~N-~l~---------~lp~~l~~l~~L~~L~l~~N~-i~~~ 278 (330)
T 1xku_A 239 TPHLRELHLNNN-KLV---------KVPGGLADHKYIQVVYLHNNN-ISAI 278 (330)
T ss_dssp STTCCEEECCSS-CCS---------SCCTTTTTCSSCCEEECCSSC-CCCC
T ss_pred CCCCCEEECCCC-cCc---------cCChhhccCCCcCEEECCCCc-CCcc
Confidence 467777777774 443 122 24556777777777765 4443
No 52
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.13 E-value=7.6e-13 Score=123.31 Aligned_cols=135 Identities=21% Similarity=0.264 Sum_probs=66.7
Q ss_pred HccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHH--HHHcCCCCcEEeccCCCCCCHHHHH
Q 023403 8 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA--LAHGCPNLTRLNISGCTSFSDHALA 85 (282)
Q Consensus 8 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~ 85 (282)
.++++++|++|+++++. +.......+...+++|++|++++| .++...... ....+++|++|+++++. +....
T Consensus 121 ~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-- 194 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNT--LDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNK-ISGDV-- 194 (768)
T ss_dssp GGGGCTTCCEEECCSSE--EECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSE-EESCC--
T ss_pred HHhCCCCCCEEECcCCc--cCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCc-ccccC--
Confidence 45677888888888652 221111112234667777777775 343322222 13456677777776642 21100
Q ss_pred HHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCC
Q 023403 86 YLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGC 155 (282)
Q Consensus 86 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 155 (282)
.. ..+++|+.|+++++. +...... ...+++|++|++++| .+++.... ....+++|++|++++|
T Consensus 195 ~~-~~l~~L~~L~Ls~n~--l~~~~~~--l~~l~~L~~L~Ls~n-~l~~~~~~-~l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 195 DV-SRCVNLEFLDVSSNN--FSTGIPF--LGDCSALQHLDISGN-KLSGDFSR-AISTCTELKLLNISSN 257 (768)
T ss_dssp BC-TTCTTCCEEECCSSC--CCSCCCB--CTTCCSCCEEECCSS-CCCSCHHH-HTTTCSSCCEEECCSS
T ss_pred Cc-ccCCcCCEEECcCCc--CCCCCcc--cccCCCCCEEECcCC-cCCCcccH-HHhcCCCCCEEECCCC
Confidence 00 345666666666643 3221111 234566666666653 34322222 2234566666666664
No 53
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.12 E-value=1.6e-13 Score=127.96 Aligned_cols=61 Identities=21% Similarity=0.149 Sum_probs=28.1
Q ss_pred CCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCC
Q 023403 12 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC 76 (282)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 76 (282)
+++|+.|+++++. +...... ....+++|++|++++|. +........+..+++|++|+++++
T Consensus 293 ~~~L~~L~Ls~n~--l~~~~p~-~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 293 CDTLTGLDLSGNH--FYGAVPP-FFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp CTTCSEEECCSSE--EEECCCG-GGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSS
T ss_pred cCcCCEEECcCCc--CCCccch-HHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCC
Confidence 3666666666542 2211111 12345666666666652 221111122234566666666654
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.12 E-value=3.9e-12 Score=115.27 Aligned_cols=56 Identities=18% Similarity=0.103 Sum_probs=27.8
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCC
Q 023403 120 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 181 (282)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 181 (282)
+|+.|++++| .+++. .....++.|++|++++| .+++..... +..+++|+.|++++|
T Consensus 233 ~L~~L~L~~n-~l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 233 ELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYN-ELEKIMYHP-FVKMQRLERLYISNN 288 (597)
T ss_dssp CCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCEEESGG-GTTCSSCCEEECTTS
T ss_pred CCCEEECCCC-CCCCC---hhhccCCCCCEEECCCC-ccCCCCHHH-hcCccCCCEEECCCC
Confidence 4556666553 34331 12234566777777663 443221111 223566666666664
No 55
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.12 E-value=4.5e-09 Score=80.49 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=36.8
Q ss_pred HHcCCCCeEEEecCCcccccHHHHHHHHHh---CCCCCEEEecCCCCCCHHHHHHHH---hcCCCCcEEEecCCCccCHH
Q 023403 88 CGFCRKLKILNLCGCVKAATDYALQAIGRN---CNQLQSLNLGWCEDVGDVGVMNLA---YGCPDLRSLDLCGCVCITDD 161 (282)
Q Consensus 88 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~ 161 (282)
....++|+.|++++|. .+++++...+... .++|++|++++| .+++.+...+. ...+.|++|++++ +.+++.
T Consensus 32 l~~~~~L~~L~L~~n~-~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIM-NIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES-NFISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCT-TCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS-SCCCHH
T ss_pred HhcCCCCCEEEecCCC-CCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC-CcCCHH
Confidence 3344455555555430 1444444433322 234555555542 34444333222 1223455555554 244444
Q ss_pred HHHHHHh---cCCCCCEEee
Q 023403 162 SVIALAN---GCPHLRSLGL 178 (282)
Q Consensus 162 ~l~~l~~---~~~~L~~L~l 178 (282)
+...+.+ ..+.|++|++
T Consensus 109 g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHHHhCCCceEEEe
Confidence 4443332 1234444544
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.11 E-value=1.1e-13 Score=124.44 Aligned_cols=183 Identities=15% Similarity=0.103 Sum_probs=82.6
Q ss_pred CCCccEEEcCCCCCCChHH-HHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHh
Q 023403 39 CHDLQDLDLSKSFKLSDRS-LYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN 117 (282)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 117 (282)
+++|++|++++| .++... .......+++|++|+++++ .+..... . ...+++|+.|+++++. +...........
T Consensus 346 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~-~-~~~l~~L~~L~l~~n~--l~~~~~~~~~~~ 419 (570)
T 2z63_A 346 LPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS-N-FLGLEQLEHLDFQHSN--LKQMSEFSVFLS 419 (570)
T ss_dssp CTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEE-E-EETCTTCCEEECTTSE--EESCTTSCTTTT
T ss_pred CCCCCEEeCcCC-ccCccccccccccccCccCEEECCCC-ccccccc-c-ccccCCCCEEEccCCc--cccccchhhhhc
Confidence 455555555554 222110 0111223556666666553 2111000 0 1235566666665532 332211111234
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCc
Q 023403 118 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGV 197 (282)
Q Consensus 118 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 197 (282)
+++|+.|++++|. +.... ......+++|++|++++| .+++..+......+++|+.|++++|. ++......
T Consensus 420 l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~------ 489 (570)
T 2z63_A 420 LRNLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA------ 489 (570)
T ss_dssp CTTCCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT------
T ss_pred CCCCCEEeCcCCc-ccccc-hhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCc-cccCChhh------
Confidence 5666666666542 22111 111234566666666664 33221122222345666666666653 22110011
Q ss_pred CCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCC
Q 023403 198 KNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~ 257 (282)
...+++|++|++++| .+++... ..+..+++|+.|++++++
T Consensus 490 ------------~~~l~~L~~L~l~~n-~l~~~~~-------~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 490 ------------FNSLSSLQVLNMASN-QLKSVPD-------GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ------------TTTCTTCCEEECCSS-CCSCCCT-------TTTTTCTTCCEEECCSSC
T ss_pred ------------hhcccCCCEEeCCCC-cCCCCCH-------HHhhcccCCcEEEecCCc
Confidence 223477888888874 4442111 124467788888888765
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.11 E-value=3.3e-11 Score=100.18 Aligned_cols=170 Identities=21% Similarity=0.221 Sum_probs=118.4
Q ss_pred ccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHH
Q 023403 9 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 88 (282)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 88 (282)
+..+++|+.|+++++. +.+... ...+++|++|++++|. ++.. .. +..+++|++|+++++ .+... .. .
T Consensus 59 ~~~l~~L~~L~L~~n~--i~~~~~---~~~l~~L~~L~L~~n~-l~~~--~~-~~~l~~L~~L~l~~n-~l~~~--~~-l 125 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQ--ITDLAP---LKNLTKITELELSGNP-LKNV--SA-IAGLQSIKTLDLTST-QITDV--TP-L 125 (308)
T ss_dssp GGGCTTCCEEECCSSC--CCCCGG---GTTCCSCCEEECCSCC-CSCC--GG-GTTCTTCCEEECTTS-CCCCC--GG-G
T ss_pred hhccCCCCEEEccCCc--CCCChh---HccCCCCCEEEccCCc-CCCc--hh-hcCCCCCCEEECCCC-CCCCc--hh-h
Confidence 4678999999999874 332111 4668999999999974 4432 22 345899999999985 44332 12 3
Q ss_pred HcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHh
Q 023403 89 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN 168 (282)
Q Consensus 89 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 168 (282)
..+++|+.|+++++. +++... ...+++|+.|++++| .+++... ...+++|++|++++| .+++. .. ..
T Consensus 126 ~~l~~L~~L~l~~n~--l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~--~~-l~ 192 (308)
T 1h6u_A 126 AGLSNLQVLYLDLNQ--ITNISP---LAGLTNLQYLSIGNA-QVSDLTP---LANLSKLTTLKADDN-KISDI--SP-LA 192 (308)
T ss_dssp TTCTTCCEEECCSSC--CCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCC--GG-GG
T ss_pred cCCCCCCEEECCCCc--cCcCcc---ccCCCCccEEEccCC-cCCCChh---hcCCCCCCEEECCCC-ccCcC--hh-hc
Confidence 568999999999964 443222 446899999999986 4554221 457899999999995 56532 22 45
Q ss_pred cCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCC
Q 023403 169 GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT 225 (282)
Q Consensus 169 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 225 (282)
.+++|++|++++|. +++.. .+ ..+++|++|++++|+
T Consensus 193 ~l~~L~~L~L~~N~-l~~~~--~l------------------~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 193 SLPNLIEVHLKNNQ-ISDVS--PL------------------ANTSNLFIVTLTNQT 228 (308)
T ss_dssp GCTTCCEEECTTSC-CCBCG--GG------------------TTCTTCCEEEEEEEE
T ss_pred CCCCCCEEEccCCc-cCccc--cc------------------cCCCCCCEEEccCCe
Confidence 68999999999974 43211 12 234899999999853
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.10 E-value=2e-14 Score=119.94 Aligned_cols=155 Identities=12% Similarity=-0.003 Sum_probs=66.4
Q ss_pred CCccEEEccCCCCCCcH--HHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHc
Q 023403 13 TKLQTLVLRQDKPQLED--NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 90 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 90 (282)
.+++.|+++++. +.+ .... ....+++|++|+++++..+....+..+ ..+++|++|+++++ .+..... .....
T Consensus 50 ~~l~~L~L~~~~--l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n-~l~~~~p-~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLN--LPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHT-NVSGAIP-DFLSQ 123 (313)
T ss_dssp CCEEEEEEECCC--CSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEE-CCEEECC-GGGGG
T ss_pred ceEEEEECCCCC--ccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCC-eeCCcCC-HHHhC
Confidence 456666666542 221 1111 223456666666663112221111112 24666666666653 3321111 11234
Q ss_pred CCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCC-CCcEEEecCCCccCHHHHHHHHhc
Q 023403 91 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP-DLRSLDLCGCVCITDDSVIALANG 169 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~~l~~~~l~~l~~~ 169 (282)
+++|++|+++++. +.+.....+ ..+++|++|+++++ .+++.....+ ..++ .|++|+++++ .++......+ ..
T Consensus 124 l~~L~~L~Ls~N~--l~~~~p~~~-~~l~~L~~L~L~~N-~l~~~~p~~l-~~l~~~L~~L~L~~N-~l~~~~~~~~-~~ 196 (313)
T 1ogq_A 124 IKTLVTLDFSYNA--LSGTLPPSI-SSLPNLVGITFDGN-RISGAIPDSY-GSFSKLFTSMTISRN-RLTGKIPPTF-AN 196 (313)
T ss_dssp CTTCCEEECCSSE--EESCCCGGG-GGCTTCCEEECCSS-CCEEECCGGG-GCCCTTCCEEECCSS-EEEEECCGGG-GG
T ss_pred CCCCCEEeCCCCc--cCCcCChHH-hcCCCCCeEECcCC-cccCcCCHHH-hhhhhcCcEEECcCC-eeeccCChHH-hC
Confidence 5666666666632 332211122 23566666666653 3331111111 1333 5666666663 3321111111 22
Q ss_pred CCCCCEEeecCC
Q 023403 170 CPHLRSLGLYYC 181 (282)
Q Consensus 170 ~~~L~~L~l~~~ 181 (282)
++ |+.|++++|
T Consensus 197 l~-L~~L~Ls~N 207 (313)
T 1ogq_A 197 LN-LAFVDLSRN 207 (313)
T ss_dssp CC-CSEEECCSS
T ss_pred Cc-ccEEECcCC
Confidence 33 666666664
No 59
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.08 E-value=2.6e-13 Score=123.07 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=26.3
Q ss_pred hCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCC
Q 023403 117 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 181 (282)
Q Consensus 117 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 181 (282)
.+++|+.|++++|. +..... .....+++|++|++++| .+++..+...+..+++|+.|++++|
T Consensus 422 ~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 422 SLEKLLYLDISYTN-TKIDFD-GIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp TCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ccccCCEEECcCCC-CCccch-hhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC
Confidence 34555555555532 221100 11223455556665553 3332111222233455666666554
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=4.8e-12 Score=118.48 Aligned_cols=137 Identities=12% Similarity=0.073 Sum_probs=76.6
Q ss_pred HHHHcc--CCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCCh-HHHHHHH------HcCCCCcEEeccC
Q 023403 5 VLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD-RSLYALA------HGCPNLTRLNISG 75 (282)
Q Consensus 5 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~------~~~~~L~~L~l~~ 75 (282)
++.-+. ++++|+.|+++++. +..... .....+++|++|++++|..++. ..+..+. ..+++|++|++++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~--l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCP--NMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCT--TCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred CChhhhhccCCCCCEEECcCCC--CCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 444444 78889999988763 222222 2234578888888888743565 3332222 2345888888887
Q ss_pred CCCCCHHHHHH--HHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCC-CcEEEe
Q 023403 76 CTSFSDHALAY--LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD-LRSLDL 152 (282)
Q Consensus 76 ~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l 152 (282)
+ .+. .+.. ....+++|+.|+++++. ++ .+. ....+++|+.|+++++ .+.. +......+++ |++|++
T Consensus 558 N-~L~--~ip~~~~l~~L~~L~~L~Ls~N~--l~--~lp-~~~~L~~L~~L~Ls~N-~l~~--lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 558 N-NLE--EFPASASLQKMVKLGLLDCVHNK--VR--HLE-AFGTNVKLTDLKLDYN-QIEE--IPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp S-CCC--BCCCHHHHTTCTTCCEEECTTSC--CC--BCC-CCCTTSEESEEECCSS-CCSC--CCTTSCEECTTCCEEEC
T ss_pred C-cCC--ccCChhhhhcCCCCCEEECCCCC--cc--cch-hhcCCCcceEEECcCC-cccc--chHHHhhccccCCEEEC
Confidence 4 444 2222 33457888888888743 44 111 2234566777777664 3331 1111223455 666666
Q ss_pred cCC
Q 023403 153 CGC 155 (282)
Q Consensus 153 ~~~ 155 (282)
++|
T Consensus 627 s~N 629 (876)
T 4ecn_A 627 SHN 629 (876)
T ss_dssp CSS
T ss_pred cCC
Confidence 663
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.07 E-value=3.8e-12 Score=106.27 Aligned_cols=151 Identities=21% Similarity=0.172 Sum_probs=86.0
Q ss_pred HHHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHH
Q 023403 6 LSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALA 85 (282)
Q Consensus 6 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 85 (282)
...+..+++|+.|+++++. +..... ...+++|++|++++| .++... ..++|++|+++++ .+....
T Consensus 51 ~~~~~~l~~L~~L~Ls~n~--l~~~~~---~~~l~~L~~L~Ls~n-~l~~l~------~~~~L~~L~l~~n-~l~~~~-- 115 (317)
T 3o53_A 51 AADLAPFTKLELLNLSSNV--LYETLD---LESLSTLRTLDLNNN-YVQELL------VGPSIETLHAANN-NISRVS-- 115 (317)
T ss_dssp HHHHTTCTTCCEEECTTSC--CEEEEE---ETTCTTCCEEECCSS-EEEEEE------ECTTCCEEECCSS-CCSEEE--
T ss_pred HHHhhCCCcCCEEECCCCc--CCcchh---hhhcCCCCEEECcCC-cccccc------CCCCcCEEECCCC-ccCCcC--
Confidence 3456789999999999873 321111 456789999999987 343211 3478888888774 333211
Q ss_pred HHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHH
Q 023403 86 YLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIA 165 (282)
Q Consensus 86 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~ 165 (282)
...+++|+.|+++++. ++......+ ..+++|+.|+++++ .+.+.....+...++.|++|++++| .++.. ..
T Consensus 116 --~~~~~~L~~L~l~~N~--l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~ 186 (317)
T 3o53_A 116 --CSRGQGKKNIYLANNK--ITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KG 186 (317)
T ss_dssp --ECCCSSCEEEECCSSC--CCSGGGBCT-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--EC
T ss_pred --ccccCCCCEEECCCCC--CCCccchhh-hccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC-cCccc--cc
Confidence 1235677777777743 443221111 23567777777764 4443323333334567777777774 44321 11
Q ss_pred HHhcCCCCCEEeecCC
Q 023403 166 LANGCPHLRSLGLYYC 181 (282)
Q Consensus 166 l~~~~~~L~~L~l~~~ 181 (282)
.. .+++|++|++++|
T Consensus 187 ~~-~l~~L~~L~Ls~N 201 (317)
T 3o53_A 187 QV-VFAKLKTLDLSSN 201 (317)
T ss_dssp CC-CCTTCCEEECCSS
T ss_pred cc-ccccCCEEECCCC
Confidence 11 2567777777775
No 62
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.07 E-value=1.7e-12 Score=111.43 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=45.5
Q ss_pred ccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHH
Q 023403 9 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 88 (282)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 88 (282)
+..+++|+.|+++++. +...... ....+++|++|++++| .++..... .+..+++|++|+++++ .+..... ...
T Consensus 65 ~~~l~~L~~L~L~~n~--i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~~-~~~ 137 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQ--IEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPPH-VFQNVPLLTVLVLERN-DLSSLPR-GIF 137 (390)
T ss_dssp HHHCCCCSEEECTTSC--CCEECTT-TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCT-TTT
T ss_pred hcccccCcEEECCCCc--ccccChh-hccCCCCcCEEECCCC-CCCcCCHH-HhcCCCCCCEEECCCC-ccCcCCH-HHh
Confidence 3445666666666542 2211111 1233555666666654 22221111 1123556666666553 3321100 111
Q ss_pred HcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecC
Q 023403 89 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGW 128 (282)
Q Consensus 89 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 128 (282)
..+++|+.|+++++. +....... ...+++|++|++++
T Consensus 138 ~~l~~L~~L~L~~n~--l~~~~~~~-~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNN--LERIEDDT-FQATTSLQNLQLSS 174 (390)
T ss_dssp TTCTTCCEEECCSSC--CCBCCTTT-TSSCTTCCEEECCS
T ss_pred cCCCCCcEEECCCCc--cCccChhh-ccCCCCCCEEECCC
Confidence 235566666665532 22211111 12345556666555
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.06 E-value=2.3e-12 Score=113.90 Aligned_cols=200 Identities=19% Similarity=0.141 Sum_probs=127.7
Q ss_pred HHHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHH
Q 023403 6 LSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALA 85 (282)
Q Consensus 6 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 85 (282)
+..+..+++|+.|+++++. +++... ...+++|++|++++| .++... ..++|++|++++| .+....
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~--l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~------~~~~L~~L~L~~N-~l~~~~-- 115 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNV--LYETLD---LESLSTLRTLDLNNN-YVQELL------VGPSIETLHAANN-NISRVS-- 115 (487)
T ss_dssp GGGGTTCTTCCEEECTTSC--CEEEEE---CTTCTTCCEEECCSS-EEEEEE------ECTTCCEEECCSS-CCCCEE--
T ss_pred HHHHhCCCCCCEEEeeCCC--CCCCcc---cccCCCCCEEEecCC-cCCCCC------CCCCcCEEECcCC-cCCCCC--
Confidence 3456789999999999874 332111 456889999999997 444221 3589999999885 443221
Q ss_pred HHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHH
Q 023403 86 YLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIA 165 (282)
Q Consensus 86 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~ 165 (282)
...+++|+.|+++++. +++.....+ ..+++|+.|+++++ .+++.....+...++.|++|++++| .+++. ..
T Consensus 116 --~~~l~~L~~L~L~~N~--l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~--~~ 186 (487)
T 3oja_A 116 --CSRGQGKKNIYLANNK--ITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KG 186 (487)
T ss_dssp --ECCCSSCEEEECCSSC--CCSGGGBCG-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--EC
T ss_pred --ccccCCCCEEECCCCC--CCCCCchhh-cCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC-ccccc--cc
Confidence 1246889999998854 554322222 34788999999884 5665333344445788999999995 55432 11
Q ss_pred HHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccC
Q 023403 166 LANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTC 245 (282)
Q Consensus 166 l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~ 245 (282)
. ..+++|+.|++++|. ++.... .+ ..+++|+.|++++ +.++. ..+.+..+
T Consensus 187 ~-~~l~~L~~L~Ls~N~-l~~~~~-~~------------------~~l~~L~~L~Ls~-N~l~~--------lp~~l~~l 236 (487)
T 3oja_A 187 Q-VVFAKLKTLDLSSNK-LAFMGP-EF------------------QSAAGVTWISLRN-NKLVL--------IEKALRFS 236 (487)
T ss_dssp C-CCCTTCCEEECCSSC-CCEECG-GG------------------GGGTTCSEEECTT-SCCCE--------ECTTCCCC
T ss_pred c-ccCCCCCEEECCCCC-CCCCCH-hH------------------cCCCCccEEEecC-CcCcc--------cchhhccC
Confidence 1 136889999999864 432100 01 1237888888888 45542 11234566
Q ss_pred CCcceeeecCCCCc
Q 023403 246 SGRHSLVMSGCLNL 259 (282)
Q Consensus 246 ~~L~~L~l~~c~~~ 259 (282)
++|+.|++++++..
T Consensus 237 ~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 237 QNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCCEEECTTCCBC
T ss_pred CCCCEEEcCCCCCc
Confidence 78888888887743
No 64
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=5.2e-10 Score=94.72 Aligned_cols=178 Identities=20% Similarity=0.224 Sum_probs=122.5
Q ss_pred ccCCCCccEEEccCCCCC---C---cHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHH
Q 023403 9 APKLTKLQTLVLRQDKPQ---L---EDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDH 82 (282)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~---~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 82 (282)
..++++|+.|.+.+.... + ....+..+...+|+|++|.++++.... +..+ ..++|++|++..| .++..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~---l~~~--~~~~L~~L~L~~~-~l~~~ 208 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS---IGKK--PRPNLKSLEIISG-GLPDS 208 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB---CCSC--BCTTCSEEEEECS-BCCHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce---eccc--cCCCCcEEEEecC-CCChH
Confidence 457899999999754211 1 111244666778999999998863222 1111 3789999999874 67887
Q ss_pred HHHHHHH-cCCCCeEEEecCCcccc-cH---HHHHHHH--HhCCCCCEEEecCCCCCCHHHHHHHHh--cCCCCcEEEec
Q 023403 83 ALAYLCG-FCRKLKILNLCGCVKAA-TD---YALQAIG--RNCNQLQSLNLGWCEDVGDVGVMNLAY--GCPDLRSLDLC 153 (282)
Q Consensus 83 ~~~~~~~-~~~~L~~L~l~~~~~~~-~~---~~~~~l~--~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~ 153 (282)
.+..+.. .+|+|+.|++..+.+.. .+ ..+..+. ..+|+|+.|++.+| .+.+.....+.. .+|+|++|+++
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECC
Confidence 7776653 68999999986421111 11 1111111 24789999999885 466655445543 46899999998
Q ss_pred CCCccCHHHHHHHHh---cCCCCCEEeecCCCCCcHHHHHHHHhc
Q 023403 154 GCVCITDDSVIALAN---GCPHLRSLGLYYCRNITDRAIYSLAQS 195 (282)
Q Consensus 154 ~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~ 195 (282)
. +.+++.+...+.. .+++|+.|+++.| .+++.++..+.+.
T Consensus 288 ~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~a 330 (362)
T 2ra8_A 288 A-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKS 330 (362)
T ss_dssp S-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHH
T ss_pred C-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHH
Confidence 8 5899988776653 4689999999987 6999999888763
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.06 E-value=8.5e-11 Score=102.99 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=61.6
Q ss_pred CCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHc
Q 023403 11 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 90 (282)
Q Consensus 11 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 90 (282)
++++|+.|+++++. +.+. .. ...+++|++|++++| .++... ...+++|++|+++++ .+.... ...
T Consensus 40 ~l~~L~~L~Ls~n~--l~~~--~~-l~~l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N-~l~~~~----~~~ 104 (457)
T 3bz5_A 40 QLATLTSLDCHNSS--ITDM--TG-IEKLTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSN-KLTNLD----VTP 104 (457)
T ss_dssp HHTTCCEEECCSSC--CCCC--TT-GGGCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSS-CCSCCC----CTT
T ss_pred HcCCCCEEEccCCC--cccC--hh-hcccCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCC-CCceee----cCC
Confidence 45677777777652 2221 11 244677777777765 333321 234667777777664 333221 234
Q ss_pred CCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCC
Q 023403 91 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGC 155 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 155 (282)
+++|+.|+++++. ++... ...+++|++|+++++ .+++.. ...+++|++|++++|
T Consensus 105 l~~L~~L~L~~N~--l~~l~----~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 105 LTKLTYLNCDTNK--LTKLD----VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLN 158 (457)
T ss_dssp CTTCCEEECCSSC--CSCCC----CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTC
T ss_pred CCcCCEEECCCCc--CCeec----CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCC
Confidence 6667777776643 33321 234566666666653 333311 223455555555554
No 66
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=3.6e-12 Score=119.31 Aligned_cols=232 Identities=17% Similarity=0.090 Sum_probs=136.6
Q ss_pred HHHHccCCCCccEEEccCCCCCCcH-----------------HHHHHH-HhhCCCccEEEcCCCCCCChHHHHHHHHcCC
Q 023403 5 VLSLAPKLTKLQTLVLRQDKPQLED-----------------NAVEAI-ANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 66 (282)
Q Consensus 5 ~~~~~~~~~~L~~L~l~~~~~~~~~-----------------~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 66 (282)
++..+.++++|+.|+|+++ .++. ..+..+ ...+++|++|+|++|.. ....+ ..+..++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N--~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP-~~l~~L~ 515 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANS--PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLP-DFLYDLP 515 (876)
T ss_dssp ECGGGGGCTTCCEEEEESC--CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCC-GGGGGCS
T ss_pred hhHHHhcCCCCCEEECcCC--cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccCh-HHHhCCC
Confidence 4556788999999999987 4444 122222 23689999999998743 22222 3334689
Q ss_pred CCcEEeccCCCCCCHHHHHHHHH-------cCCCCeEEEecCCcccccHHHHH-HHHHhCCCCCEEEecCCCCCCHHHHH
Q 023403 67 NLTRLNISGCTSFSDHALAYLCG-------FCRKLKILNLCGCVKAATDYALQ-AIGRNCNQLQSLNLGWCEDVGDVGVM 138 (282)
Q Consensus 67 ~L~~L~l~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~~ 138 (282)
+|++|+++++..++...++.... .+++|+.|+++++. +. .... .....+++|+.|+++++ .+.. +.
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~--L~-~ip~~~~l~~L~~L~~L~Ls~N-~l~~--lp 589 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN--LE-EFPASASLQKMVKLGLLDCVHN-KVRH--LE 589 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC--CC-BCCCHHHHTTCTTCCEEECTTS-CCCB--CC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc--CC-ccCChhhhhcCCCCCEEECCCC-Cccc--ch
Confidence 99999999964366512222122 34599999999954 55 2111 13346899999999985 4552 22
Q ss_pred HHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCC-CCEEeecCCCCCcHHHHHHHHhcCc------CCCCcchhc-ccc-
Q 023403 139 NLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH-LRSLGLYYCRNITDRAIYSLAQSGV------KNKPGIWES-MKG- 209 (282)
Q Consensus 139 ~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~-L~~L~l~~~~~l~~~~~~~l~~~~~------~~~~~~~~~-~~~- 209 (282)
....+++|++|++++| .++ .+..-+..+++ |+.|++++|. ++. ....+..... ......+.. +..
T Consensus 590 -~~~~L~~L~~L~Ls~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~-L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYN-QIE--EIPEDFCAFTDQVEGLGFSHNK-LKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp -CCCTTSEESEEECCSS-CCS--CCCTTSCEECTTCCEEECCSSC-CCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred -hhcCCCcceEEECcCC-ccc--cchHHHhhccccCCEEECcCCC-CCc-CchhhhccccCCCCEEECcCCcCCCccccc
Confidence 3346789999999995 565 23322345677 9999999975 441 0000000000 000000000 000
Q ss_pred -----cCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccc
Q 023403 210 -----RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTS 261 (282)
Q Consensus 210 -----~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~ 261 (282)
...+++|++|++++ +.++.. ...+. ..+++|+.|++++|. ++.
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~-N~L~~l-p~~~~------~~l~~L~~L~Ls~N~-L~~ 711 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSY-NEIQKF-PTELF------ATGSPISTIILSNNL-MTS 711 (876)
T ss_dssp SSCTTTCCCCCEEEEECCS-SCCCSC-CHHHH------HTTCCCSEEECCSCC-CSC
T ss_pred hhhhccccCCCcCEEEccC-CcCCcc-CHHHH------ccCCCCCEEECCCCc-CCc
Confidence 11334788888888 445421 12222 256778999999884 444
No 67
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.06 E-value=4.8e-12 Score=106.18 Aligned_cols=229 Identities=16% Similarity=0.138 Sum_probs=108.2
Q ss_pred HccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHH
Q 023403 8 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 87 (282)
Q Consensus 8 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 87 (282)
.+..+++|++|+++++. ++..... ....+++|++|+++++ .++... . ...++|++|+++++ .+...... .
T Consensus 71 ~~~~l~~L~~L~L~~n~--l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~l~--~--~~~~~L~~L~l~~n-~l~~~~~~-~ 140 (330)
T 1xku_A 71 DFKNLKNLHTLILINNK--ISKISPG-AFAPLVKLERLYLSKN-QLKELP--E--KMPKTLQELRVHEN-EITKVRKS-V 140 (330)
T ss_dssp TTTTCTTCCEEECCSSC--CCCBCTT-TTTTCTTCCEEECCSS-CCSBCC--S--SCCTTCCEEECCSS-CCCBBCHH-H
T ss_pred hhccCCCCCEEECCCCc--CCeeCHH-HhcCCCCCCEEECCCC-cCCccC--h--hhcccccEEECCCC-cccccCHh-H
Confidence 45678889999998763 3221111 1245778888888876 333211 0 11367777777764 33322211 2
Q ss_pred HHcCCCCeEEEecCCcccccHHH-HHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHH
Q 023403 88 CGFCRKLKILNLCGCVKAATDYA-LQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL 166 (282)
Q Consensus 88 ~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l 166 (282)
...+++|+.|+++++. +.... .......+++|+.|+++++ .+.... . ...+.|++|+++++ .++......
T Consensus 141 ~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~--~--~~~~~L~~L~l~~n-~l~~~~~~~- 211 (330)
T 1xku_A 141 FNGLNQMIVVELGTNP--LKSSGIENGAFQGMKKLSYIRIADT-NITTIP--Q--GLPPSLTELHLDGN-KITKVDAAS- 211 (330)
T ss_dssp HTTCTTCCEEECCSSC--CCGGGBCTTGGGGCTTCCEEECCSS-CCCSCC--S--SCCTTCSEEECTTS-CCCEECTGG-
T ss_pred hcCCccccEEECCCCc--CCccCcChhhccCCCCcCEEECCCC-ccccCC--c--cccccCCEEECCCC-cCCccCHHH-
Confidence 2346777777777643 32211 1111234566666666653 232100 0 01245555555553 333211111
Q ss_pred HhcCCCCCEEeecCCCCCcHHHHHHHHhcC----cCCCCcchhccc-ccCcccCcceEeccCCCCCCHHHHHHHHhhCCC
Q 023403 167 ANGCPHLRSLGLYYCRNITDRAIYSLAQSG----VKNKPGIWESMK-GRYDEEGLQSLNISQCTALTPPAVQALCDTFPA 241 (282)
Q Consensus 167 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~----~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 241 (282)
...+++|++|+++++. ++......+.... +......+..+. .+..+++|++|++++ +.++......+......
T Consensus 212 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYN 289 (330)
T ss_dssp GTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCC
T ss_pred hcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCC-CcCCccChhhcCCcccc
Confidence 1234555555555542 2211000010000 000000111111 144568999999999 45654333322211111
Q ss_pred CccCCCcceeeecCCCC
Q 023403 242 LHTCSGRHSLVMSGCLN 258 (282)
Q Consensus 242 l~~~~~L~~L~l~~c~~ 258 (282)
...+.|+.|++++++-
T Consensus 290 -~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 290 -TKKASYSGVSLFSNPV 305 (330)
T ss_dssp -TTSCCCSEEECCSSSS
T ss_pred -cccccccceEeecCcc
Confidence 1346788999999884
No 68
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.06 E-value=5.3e-13 Score=121.05 Aligned_cols=211 Identities=16% Similarity=0.034 Sum_probs=123.8
Q ss_pred cCCCCccEEEccCCCCCCcHHH-HHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHH
Q 023403 10 PKLTKLQTLVLRQDKPQLEDNA-VEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 88 (282)
Q Consensus 10 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 88 (282)
..+++|+.|+++++. ++... .......+++|++|++++|. +.... ..+..+++|++|+++++ .+.........
T Consensus 347 ~~l~~L~~L~ls~n~--l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 420 (606)
T 3vq2_A 347 VALPSLSYLDLSRNA--LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS--ANFMGLEELQHLDFQHS-TLKRVTEFSAF 420 (606)
T ss_dssp CCCTTCCEEECCSSC--EEEEEECCHHHHCCSCCCEEECCSCS-EEEEC--CCCTTCTTCCEEECTTS-EEESTTTTTTT
T ss_pred ccCCCCCEEECcCCc--cCCCcchhhhhccCCcccEeECCCCc-cccch--hhccCCCCCCeeECCCC-ccCCccChhhh
Confidence 356677777777652 22110 01122446778888887763 32211 22234678888888775 22211110122
Q ss_pred HcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHh
Q 023403 89 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN 168 (282)
Q Consensus 89 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 168 (282)
..+++|+.|++++|. +....... ...+++|+.|++++| .+.+..+......+++|++|++++| .++... .....
T Consensus 421 ~~l~~L~~L~l~~n~--l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~ 494 (606)
T 3vq2_A 421 LSLEKLLYLDISYTN--TKIDFDGI-FLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQIS-WGVFD 494 (606)
T ss_dssp TTCTTCCEEECTTSC--CEECCTTT-TTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTT
T ss_pred hccccCCEEECcCCC--CCccchhh-hcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccC-hhhhc
Confidence 357899999999864 44322222 235789999999985 4443212223346789999999996 555322 22234
Q ss_pred cCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCC-C
Q 023403 169 GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCS-G 247 (282)
Q Consensus 169 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~-~ 247 (282)
.+++|++|++++|. ++...... ...+++|++|++++| .++.. .+.+..++ +
T Consensus 495 ~l~~L~~L~Ls~N~-l~~~~~~~------------------~~~l~~L~~L~l~~N-~l~~~--------p~~~~~l~~~ 546 (606)
T 3vq2_A 495 TLHRLQLLNMSHNN-LLFLDSSH------------------YNQLYSLSTLDCSFN-RIETS--------KGILQHFPKS 546 (606)
T ss_dssp TCTTCCEEECCSSC-CSCEEGGG------------------TTTCTTCCEEECTTS-CCCCE--------ESCGGGSCTT
T ss_pred ccccCCEEECCCCc-CCCcCHHH------------------ccCCCcCCEEECCCC-cCccc--------CHhHhhhccc
Confidence 68999999999974 43211111 223489999999995 46421 11244565 5
Q ss_pred cceeeecCCCCcc
Q 023403 248 RHSLVMSGCLNLT 260 (282)
Q Consensus 248 L~~L~l~~c~~~~ 260 (282)
|+.|++++++..-
T Consensus 547 L~~l~l~~N~~~c 559 (606)
T 3vq2_A 547 LAFFNLTNNSVAC 559 (606)
T ss_dssp CCEEECCSCCCCC
T ss_pred CcEEEccCCCccc
Confidence 8999999987543
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.04 E-value=2.5e-12 Score=104.96 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=77.5
Q ss_pred CCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHc
Q 023403 11 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 90 (282)
Q Consensus 11 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 90 (282)
.+++|+.|++.++. +.. +.. ...+++|++|++++|. ++. +.. +..+++|++|+++++ .+..... .....
T Consensus 39 ~l~~L~~L~l~~~~--i~~--~~~-l~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~L~~L~L~~n-~l~~~~~-~~~~~ 107 (272)
T 3rfs_A 39 ELNSIDQIIANNSD--IKS--VQG-IQYLPNVRYLALGGNK-LHD--ISA-LKELTNLTYLILTGN-QLQSLPN-GVFDK 107 (272)
T ss_dssp HHTTCCEEECTTSC--CCC--CTT-GGGCTTCCEEECTTSC-CCC--CGG-GTTCTTCCEEECTTS-CCCCCCT-TTTTT
T ss_pred cccceeeeeeCCCC--ccc--ccc-cccCCCCcEEECCCCC-CCC--chh-hcCCCCCCEEECCCC-ccCccCh-hHhcC
Confidence 35667777777652 221 011 2446777777777753 332 122 234677777777764 3322111 11234
Q ss_pred CCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcC
Q 023403 91 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 170 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 170 (282)
+++|+.|+++++. ++..... ....+++|+.|++++| .++.... .....+++|++|++++| .+++.. ......+
T Consensus 108 l~~L~~L~L~~n~--l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l 180 (272)
T 3rfs_A 108 LTNLKELVLVENQ--LQSLPDG-VFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYN-QLQSLP-EGVFDKL 180 (272)
T ss_dssp CTTCCEEECTTSC--CCCCCTT-TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTC
T ss_pred CcCCCEEECCCCc--CCccCHH-HhccCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCC-CcCccC-HHHhcCC
Confidence 6677777777643 3321111 1224567777777764 3432111 11234567777777774 444211 1222346
Q ss_pred CCCCEEeecCC
Q 023403 171 PHLRSLGLYYC 181 (282)
Q Consensus 171 ~~L~~L~l~~~ 181 (282)
++|+.|++++|
T Consensus 181 ~~L~~L~L~~N 191 (272)
T 3rfs_A 181 TQLKDLRLYQN 191 (272)
T ss_dssp TTCCEEECCSS
T ss_pred ccCCEEECCCC
Confidence 67777777775
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.04 E-value=2.5e-13 Score=111.19 Aligned_cols=203 Identities=18% Similarity=0.123 Sum_probs=107.3
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 92 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 92 (282)
++++.|+++++. +...... ....+++|++|++++| .++..... .+..+++|++|+++++ .+...... ....++
T Consensus 28 ~~l~~L~ls~n~--l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNP--LRHLGSY-SFFSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGN-PIQSLALG-AFSGLS 100 (276)
T ss_dssp TTCCEEECTTCC--CCEECTT-TTTTCTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTC-CCCEECTT-TTTTCT
T ss_pred CCccEEECCCCc--ccccCHh-HhccccCCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCC-ccCccChh-hhcCCc
Confidence 358888888753 3221111 2244678888888876 34322211 1234678888888774 33222111 123467
Q ss_pred CCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCH---HHHHHHHhc
Q 023403 93 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITD---DSVIALANG 169 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~---~~l~~l~~~ 169 (282)
+|+.|++.++. +....... ...+++|++|+++++ .+....+......+++|++|++++| .++. ..+..+. .
T Consensus 101 ~L~~L~l~~n~--l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~-~ 174 (276)
T 2z62_A 101 SLQKLVAVETN--LASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH-Q 174 (276)
T ss_dssp TCCEEECTTSC--CCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH-T
T ss_pred cccEEECCCCC--ccccCchh-cccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhh-h
Confidence 88888887743 33211111 234677888888764 3432212222345677888888774 4432 2222222 2
Q ss_pred CCCCC-EEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCC-CccCCC
Q 023403 170 CPHLR-SLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPA-LHTCSG 247 (282)
Q Consensus 170 ~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~-l~~~~~ 247 (282)
++.+. +|+++++. ++... . ......+|++|++++| .++.. .+. +..+++
T Consensus 175 L~~l~l~L~ls~n~-l~~~~-----~--------------~~~~~~~L~~L~L~~n-~l~~~--------~~~~~~~l~~ 225 (276)
T 2z62_A 175 MPLLNLSLDLSLNP-MNFIQ-----P--------------GAFKEIRLKELALDTN-QLKSV--------PDGIFDRLTS 225 (276)
T ss_dssp CTTCCEEEECCSSC-CCEEC-----T--------------TSSCSCCEEEEECCSS-CCSCC--------CTTTTTTCCS
T ss_pred ccccceeeecCCCc-ccccC-----c--------------cccCCCcccEEECCCC-ceeec--------CHhHhccccc
Confidence 33333 67777753 32100 0 0112258999999994 46521 111 356788
Q ss_pred cceeeecCCC
Q 023403 248 RHSLVMSGCL 257 (282)
Q Consensus 248 L~~L~l~~c~ 257 (282)
|+.|++++++
T Consensus 226 L~~L~l~~N~ 235 (276)
T 2z62_A 226 LQKIWLHTNP 235 (276)
T ss_dssp CCEEECCSSC
T ss_pred ccEEEccCCc
Confidence 9999999554
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.03 E-value=2.8e-12 Score=116.23 Aligned_cols=13 Identities=15% Similarity=-0.084 Sum_probs=7.1
Q ss_pred CCCcceeeecCCC
Q 023403 245 CSGRHSLVMSGCL 257 (282)
Q Consensus 245 ~~~L~~L~l~~c~ 257 (282)
+++|+.|++++|.
T Consensus 300 l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 300 IPTLKVLDLSHNH 312 (597)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCcEEECCCCC
Confidence 4555555555553
No 72
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.03 E-value=8.4e-13 Score=120.47 Aligned_cols=165 Identities=16% Similarity=0.101 Sum_probs=101.9
Q ss_pred HHHHccCCCCccEEEccCCCCCCcHH-----------------HHHHHH-hhCCCccEEEcCCCCCCChHHHHHHHHcCC
Q 023403 5 VLSLAPKLTKLQTLVLRQDKPQLEDN-----------------AVEAIA-NSCHDLQDLDLSKSFKLSDRSLYALAHGCP 66 (282)
Q Consensus 5 ~~~~~~~~~~L~~L~l~~~~~~~~~~-----------------~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 66 (282)
++..+.++++|+.|+++++ .+++. .+..+. ..+++|++|++++|. +....+.. +..++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~-l~~l~ 273 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNS--PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTF-LKALP 273 (636)
T ss_dssp ECGGGGGCTTCCEEEEESC--CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TCSSCCTT-TTTCS
T ss_pred CCHHHhcccCCCEEECcCC--ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-CCccChHH-HhcCC
Confidence 4456778999999999987 34442 222221 167899999999874 33222222 33589
Q ss_pred CCcEEeccCCCCCCHHHHHHHHHc------CCCCeEEEecCCcccccHHHHH-HHHHhCCCCCEEEecCCCCCCHHHHHH
Q 023403 67 NLTRLNISGCTSFSDHALAYLCGF------CRKLKILNLCGCVKAATDYALQ-AIGRNCNQLQSLNLGWCEDVGDVGVMN 139 (282)
Q Consensus 67 ~L~~L~l~~~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~~~ 139 (282)
+|++|+++++..++...+...... +++|+.|+++++. ++ .... .....+++|+.|+++++ .+.+. +.
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~--l~-~ip~~~~l~~l~~L~~L~L~~N-~l~g~-ip- 347 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN--LK-TFPVETSLQKMKKLGMLECLYN-QLEGK-LP- 347 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC--CS-SCCCHHHHTTCTTCCEEECCSC-CCEEE-CC-
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc--CC-ccCchhhhccCCCCCEEeCcCC-cCccc-hh-
Confidence 999999998643665223322233 3899999999854 55 2111 12346889999999885 34411 11
Q ss_pred HHhcCCCCcEEEecCCCccCHHHHHHHHhcCCC-CCEEeecCCC
Q 023403 140 LAYGCPDLRSLDLCGCVCITDDSVIALANGCPH-LRSLGLYYCR 182 (282)
Q Consensus 140 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~-L~~L~l~~~~ 182 (282)
....+++|++|+++++ .++ .+..-+..+++ |++|++++|.
T Consensus 348 ~~~~l~~L~~L~L~~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 348 AFGSEIKLASLNLAYN-QIT--EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp CCEEEEEESEEECCSS-EEE--ECCTTSEEECTTCCEEECCSSC
T ss_pred hhCCCCCCCEEECCCC-ccc--cccHhhhhhcccCcEEEccCCc
Confidence 2234577888888884 454 22222344667 8888888864
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.02 E-value=1.7e-12 Score=119.30 Aligned_cols=42 Identities=17% Similarity=0.088 Sum_probs=27.5
Q ss_pred cccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCcc
Q 023403 212 DEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLT 260 (282)
Q Consensus 212 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~ 260 (282)
.+++|++|++++ +.++......+.. .+++|+.|++++++..-
T Consensus 582 ~l~~L~~L~L~~-N~l~~~~~~~~~~------~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 582 NQVSLKSLNLQK-NLITSVEKKVFGP------AFRNLTELDMRFNPFDC 623 (680)
T ss_dssp TCTTCCEEECTT-SCCCBCCHHHHHH------HHTTCSEEECTTCCCCB
T ss_pred CCCCCCEEECCC-CcCCccChhHhcc------cccccCEEEccCCCccc
Confidence 448899999988 4665544443331 34567899998877443
No 74
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.02 E-value=1.6e-10 Score=95.22 Aligned_cols=167 Identities=22% Similarity=0.185 Sum_probs=90.3
Q ss_pred CCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhC
Q 023403 39 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 118 (282)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 118 (282)
+++|++|++++|. +... .. ...+++|++|+++++ .+.... . ...+++|+.|+++++. +.+. .. ...+
T Consensus 45 l~~L~~L~l~~~~-i~~~--~~-~~~l~~L~~L~L~~n-~l~~~~--~-l~~l~~L~~L~l~~n~--l~~~--~~-l~~l 111 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNGN-KLTDIK--P-LANLKNLGWLFLDENK--VKDL--SS-LKDL 111 (291)
T ss_dssp HHTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSC--CCCG--GG-GTTC
T ss_pred cCcccEEEccCCC-cccC--hh-HhcCCCCCEEEccCC-ccCCCc--c-cccCCCCCEEECCCCc--CCCC--hh-hccC
Confidence 3567777777652 3321 11 234677777777764 332211 1 3446777777777643 4331 11 2346
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcC
Q 023403 119 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVK 198 (282)
Q Consensus 119 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 198 (282)
++|++|++++| .+.+. . ....+++|++|++++| .+++- .....+++|+.|++++|. +++... +
T Consensus 112 ~~L~~L~L~~n-~i~~~--~-~l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~--l------ 174 (291)
T 1h6t_A 112 KKLKSLSLEHN-GISDI--N-GLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP--L------ 174 (291)
T ss_dssp TTCCEEECTTS-CCCCC--G-GGGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSC-CCCCGG--G------
T ss_pred CCCCEEECCCC-cCCCC--h-hhcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCCc-cccchh--h------
Confidence 67777777764 34432 1 1235667777777774 44432 223346777777777763 332110 1
Q ss_pred CCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCC
Q 023403 199 NKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 199 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~ 257 (282)
..+++|++|++++ +.+++. +.+..+++|+.|++++++
T Consensus 175 ------------~~l~~L~~L~L~~-N~i~~l---------~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 175 ------------AGLTKLQNLYLSK-NHISDL---------RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ------------TTCTTCCEEECCS-SCCCBC---------GGGTTCTTCSEEEEEEEE
T ss_pred ------------cCCCccCEEECCC-CcCCCC---------hhhccCCCCCEEECcCCc
Confidence 1237777777777 355431 234456777777777764
No 75
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.01 E-value=9.7e-11 Score=90.79 Aligned_cols=150 Identities=22% Similarity=0.247 Sum_probs=90.1
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcC
Q 023403 65 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC 144 (282)
Q Consensus 65 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 144 (282)
+++|++|+++++ .+.... . ...+++|+.|++++|. +... .. ...+++|++|+++++ .+++.....+ ..+
T Consensus 43 l~~L~~L~l~~n-~i~~l~--~-l~~l~~L~~L~l~~n~--~~~~--~~-l~~l~~L~~L~l~~n-~l~~~~~~~l-~~l 111 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLT--G-IEYAHNIKDLTINNIH--ATNY--NP-ISGLSNLERLRIMGK-DVTSDKIPNL-SGL 111 (197)
T ss_dssp HHTCCEEEEESS-CCSCCT--T-GGGCTTCSEEEEESCC--CSCC--GG-GTTCTTCCEEEEECT-TCBGGGSCCC-TTC
T ss_pred cCCccEEeccCC-CccChH--H-HhcCCCCCEEEccCCC--CCcc--hh-hhcCCCCCEEEeECC-ccCcccChhh-cCC
Confidence 567777777763 443211 1 3457778888887753 3321 12 234778888888774 4554322222 356
Q ss_pred CCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCC
Q 023403 145 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC 224 (282)
Q Consensus 145 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (282)
++|++|++++| .+++.....+ ..+++|++|++++|..+++. .. ...+++|++|++++|
T Consensus 112 ~~L~~L~Ls~n-~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~--~~------------------l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 112 TSLTLLDISHS-AHDDSILTKI-NTLPKVNSIDLSYNGAITDI--MP------------------LKTLPELKSLNIQFD 169 (197)
T ss_dssp TTCCEEECCSS-BCBGGGHHHH-TTCSSCCEEECCSCTBCCCC--GG------------------GGGCSSCCEEECTTB
T ss_pred CCCCEEEecCC-ccCcHhHHHH-hhCCCCCEEEccCCCCcccc--Hh------------------hcCCCCCCEEECCCC
Confidence 78888888884 6665444444 35788888888887534321 01 223388888888884
Q ss_pred CCCCHHHHHHHHhhCCCCccCCCcceeeecCCC
Q 023403 225 TALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 225 ~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~ 257 (282)
.+++ .+.+..+++|+.|++++++
T Consensus 170 -~i~~---------~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 170 -GVHD---------YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp -CCCC---------CTTGGGCSSCCEEEECBC-
T ss_pred -CCcC---------hHHhccCCCCCEEEeeCcc
Confidence 4543 2244567888888888775
No 76
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.00 E-value=1.9e-12 Score=118.05 Aligned_cols=162 Identities=10% Similarity=0.039 Sum_probs=94.5
Q ss_pred HHHHcc--CCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCCh-HHHHHHHH-----cCCCCcEEeccCC
Q 023403 5 VLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD-RSLYALAH-----GCPNLTRLNISGC 76 (282)
Q Consensus 5 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~-----~~~~L~~L~l~~~ 76 (282)
++..+. ++++|++|+++++. +....... ...+++|++|++++|..++. ..+..+.. .+++|++|+++++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~--l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCP--NLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCT--TCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred CchhhhhcccCCCCEEEecCCc--CCccChHH-HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 455555 88999999999863 22222222 24578999999998743665 33343432 2489999999885
Q ss_pred CCCCHHHHHH--HHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCC-CcEEEec
Q 023403 77 TSFSDHALAY--LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD-LRSLDLC 153 (282)
Q Consensus 77 ~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~ 153 (282)
.+. .+.. ....+++|+.|+++++. +.+... . ...+++|+.|+++++ .+. .+......+++ |++|+++
T Consensus 316 -~l~--~ip~~~~l~~l~~L~~L~L~~N~--l~g~ip-~-~~~l~~L~~L~L~~N-~l~--~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 316 -NLK--TFPVETSLQKMKKLGMLECLYNQ--LEGKLP-A-FGSEIKLASLNLAYN-QIT--EIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp -CCS--SCCCHHHHTTCTTCCEEECCSCC--CEEECC-C-CEEEEEESEEECCSS-EEE--ECCTTSEEECTTCCEEECC
T ss_pred -cCC--ccCchhhhccCCCCCEEeCcCCc--Cccchh-h-hCCCCCCCEEECCCC-ccc--cccHhhhhhcccCcEEEcc
Confidence 444 2222 34568899999998854 442211 2 234567788888764 333 11111234556 7777777
Q ss_pred CCCccCHHHHHHHHhc--CCCCCEEeecCCC
Q 023403 154 GCVCITDDSVIALANG--CPHLRSLGLYYCR 182 (282)
Q Consensus 154 ~~~~l~~~~l~~l~~~--~~~L~~L~l~~~~ 182 (282)
++ .++ .+...... +++|+.|++++|.
T Consensus 386 ~N-~l~--~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 386 HN-KLK--YIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp SS-CCS--SCCSCCCTTCSSCEEEEECCSSC
T ss_pred CC-cCc--ccchhhhhcccCccCEEECcCCc
Confidence 74 444 12221111 2367777777753
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.00 E-value=2.1e-10 Score=102.07 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=37.8
Q ss_pred cCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCH-HHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHh
Q 023403 90 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGD-VGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN 168 (282)
Q Consensus 90 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 168 (282)
.+++|+.|+++++. +++.....+ ..+++|+.|++++| .+.+ ..+......+++|++|++++| .+++........
T Consensus 322 ~l~~L~~L~Ls~n~--l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~ 396 (520)
T 2z7x_B 322 KISPFLHLDFSNNL--LTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCS 396 (520)
T ss_dssp SCCCCCEEECCSSC--CCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCC
T ss_pred hCCcccEEEeECCc--cChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhc
Confidence 34556666665532 333222211 23455666666553 3432 122223334556666666653 333210111112
Q ss_pred cCCCCCEEeecCC
Q 023403 169 GCPHLRSLGLYYC 181 (282)
Q Consensus 169 ~~~~L~~L~l~~~ 181 (282)
.+++|++|++++|
T Consensus 397 ~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 397 WTKSLLSLNMSSN 409 (520)
T ss_dssp CCTTCCEEECCSS
T ss_pred cCccCCEEECcCC
Confidence 3455666666554
No 78
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.99 E-value=8e-11 Score=104.79 Aligned_cols=166 Identities=15% Similarity=0.039 Sum_probs=74.4
Q ss_pred hCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCH-HHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHH
Q 023403 38 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR 116 (282)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 116 (282)
.+++|++|++++| .+++..+..+ ..+++|++|+++++ .+.. ..+......+++|+.|+++++. +.+........
T Consensus 322 ~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~--l~~~l~~~~~~ 396 (520)
T 2z7x_B 322 KISPFLHLDFSNN-LLTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS--VSYDEKKGDCS 396 (520)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC--CBCCGGGCSCC
T ss_pred hCCcccEEEeECC-ccChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc--CCcccccchhc
Confidence 3455566666554 2332111111 23555666666553 3322 1222223345566666665532 33211111112
Q ss_pred hCCCCCEEEecCCCCCCHHHHHHHHhcC-CCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhc
Q 023403 117 NCNQLQSLNLGWCEDVGDVGVMNLAYGC-PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQS 195 (282)
Q Consensus 117 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 195 (282)
.+++|++|++++| .+++.. .... +.|++|++++| .++ .+..-...+++|++|++++|. ++.....
T Consensus 397 ~l~~L~~L~Ls~N-~l~~~~----~~~l~~~L~~L~Ls~N-~l~--~ip~~~~~l~~L~~L~L~~N~-l~~l~~~----- 462 (520)
T 2z7x_B 397 WTKSLLSLNMSSN-ILTDTI----FRCLPPRIKVLDLHSN-KIK--SIPKQVVKLEALQELNVASNQ-LKSVPDG----- 462 (520)
T ss_dssp CCTTCCEEECCSS-CCCGGG----GGSCCTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSSC-CCCCCTT-----
T ss_pred cCccCCEEECcCC-CCCcch----hhhhcccCCEEECCCC-ccc--ccchhhhcCCCCCEEECCCCc-CCccCHH-----
Confidence 3455666666553 333211 1112 45666666663 443 122211245666666666652 2210000
Q ss_pred CcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHH
Q 023403 196 GVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQAL 235 (282)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 235 (282)
....+++|++|++++|+...+..+.++
T Consensus 463 -------------~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 463 -------------IFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp -------------TTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred -------------HhccCCcccEEECcCCCCcccCCchHH
Confidence 022347888888888665555554444
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.98 E-value=9.7e-11 Score=96.50 Aligned_cols=167 Identities=22% Similarity=0.176 Sum_probs=116.0
Q ss_pred CCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHc
Q 023403 11 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 90 (282)
Q Consensus 11 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 90 (282)
.+++|+.|+++++....-+ . ...+++|++|++++| .+++... +..+++|++|+++++ .+... .. ...
T Consensus 44 ~l~~L~~L~l~~~~i~~~~----~-~~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~--~~-l~~ 110 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ----G-IQYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDEN-KVKDL--SS-LKD 110 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT----T-GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCG--GG-GTT
T ss_pred hcCcccEEEccCCCcccCh----h-HhcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCC-cCCCC--hh-hcc
Confidence 4678999999986322111 1 356899999999997 4443222 446899999999985 45432 22 356
Q ss_pred CCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcC
Q 023403 91 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 170 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 170 (282)
+++|+.|+++++. +.+. .. ...+++|+.|++++| .+++. .....+++|++|++++| .+++.. . ...+
T Consensus 111 l~~L~~L~L~~n~--i~~~--~~-l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N-~l~~~~--~-l~~l 177 (291)
T 1h6t_A 111 LKKLKSLSLEHNG--ISDI--NG-LVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIV--P-LAGL 177 (291)
T ss_dssp CTTCCEEECTTSC--CCCC--GG-GGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCCCG--G-GTTC
T ss_pred CCCCCEEECCCCc--CCCC--hh-hcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCC-ccccch--h-hcCC
Confidence 8999999999964 5542 22 346899999999985 45543 23446899999999995 565422 2 4568
Q ss_pred CCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCC
Q 023403 171 PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC 224 (282)
Q Consensus 171 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (282)
++|+.|++++|. +++. .. +..+++|+.|++++|
T Consensus 178 ~~L~~L~L~~N~-i~~l--~~------------------l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 178 TKLQNLYLSKNH-ISDL--RA------------------LAGLKNLDVLELFSQ 210 (291)
T ss_dssp TTCCEEECCSSC-CCBC--GG------------------GTTCTTCSEEEEEEE
T ss_pred CccCEEECCCCc-CCCC--hh------------------hccCCCCCEEECcCC
Confidence 999999999974 4421 11 223489999999984
No 80
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.98 E-value=8.5e-11 Score=102.97 Aligned_cols=189 Identities=20% Similarity=0.125 Sum_probs=130.5
Q ss_pred ccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHH
Q 023403 9 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 88 (282)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 88 (282)
+..+++|++|+++++. +++.. ...+++|++|++++| .++... +..+++|++|+++++ .+.... .
T Consensus 60 l~~l~~L~~L~Ls~n~--l~~~~----~~~l~~L~~L~Ls~N-~l~~~~----~~~l~~L~~L~L~~N-~l~~l~----~ 123 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNN--ITTLD----LSQNTNLTYLACDSN-KLTNLD----VTPLTKLTYLNCDTN-KLTKLD----V 123 (457)
T ss_dssp GGGCTTCSEEECCSSC--CSCCC----CTTCTTCSEEECCSS-CCSCCC----CTTCTTCCEEECCSS-CCSCCC----C
T ss_pred hcccCCCCEEEccCCc--CCeEc----cccCCCCCEEECcCC-CCceee----cCCCCcCCEEECCCC-cCCeec----C
Confidence 4678999999999873 33321 356789999999987 444422 345899999999985 444321 3
Q ss_pred HcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHh
Q 023403 89 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN 168 (282)
Q Consensus 89 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 168 (282)
..+++|+.|+++++. +++.. ...+++|++|++.+|..+.... ...+++|++|+++++ .++. +. ..
T Consensus 124 ~~l~~L~~L~l~~N~--l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~l~~--l~--l~ 188 (457)
T 3bz5_A 124 SQNPLLTYLNCARNT--LTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-KITE--LD--VS 188 (457)
T ss_dssp TTCTTCCEEECTTSC--CSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-CCCC--CC--CT
T ss_pred CCCCcCCEEECCCCc--cceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-ccce--ec--cc
Confidence 468899999999854 55421 3357899999998875444321 235788999999995 6654 22 34
Q ss_pred cCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCc
Q 023403 169 GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGR 248 (282)
Q Consensus 169 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L 248 (282)
.+++|+.|++++|. ++.. . ...+++|++|++++ +.+++ .| +..+++|
T Consensus 189 ~l~~L~~L~l~~N~-l~~~---~------------------l~~l~~L~~L~Ls~-N~l~~---------ip-~~~l~~L 235 (457)
T 3bz5_A 189 QNKLLNRLNCDTNN-ITKL---D------------------LNQNIQLTFLDCSS-NKLTE---------ID-VTPLTQL 235 (457)
T ss_dssp TCTTCCEEECCSSC-CSCC---C------------------CTTCTTCSEEECCS-SCCSC---------CC-CTTCTTC
T ss_pred cCCCCCEEECcCCc-CCee---c------------------cccCCCCCEEECcC-Ccccc---------cC-ccccCCC
Confidence 57899999999874 4321 0 22348999999999 45653 23 5578899
Q ss_pred ceeeecCCCCccch
Q 023403 249 HSLVMSGCLNLTSV 262 (282)
Q Consensus 249 ~~L~l~~c~~~~~~ 262 (282)
+.|+++++. ++.+
T Consensus 236 ~~L~l~~N~-l~~~ 248 (457)
T 3bz5_A 236 TYFDCSVNP-LTEL 248 (457)
T ss_dssp SEEECCSSC-CSCC
T ss_pred CEEEeeCCc-CCCc
Confidence 999999885 5543
No 81
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.97 E-value=1.4e-10 Score=89.91 Aligned_cols=151 Identities=20% Similarity=0.280 Sum_probs=103.6
Q ss_pred CCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHc
Q 023403 11 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 90 (282)
Q Consensus 11 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 90 (282)
.+++|+.|+++++. +.+-. -...+++|++|++++| .++.. .. +..+++|++|+++++ .+.......+ ..
T Consensus 42 ~l~~L~~L~l~~n~--i~~l~---~l~~l~~L~~L~l~~n-~~~~~--~~-l~~l~~L~~L~l~~n-~l~~~~~~~l-~~ 110 (197)
T 4ezg_A 42 QMNSLTYITLANIN--VTDLT---GIEYAHNIKDLTINNI-HATNY--NP-ISGLSNLERLRIMGK-DVTSDKIPNL-SG 110 (197)
T ss_dssp HHHTCCEEEEESSC--CSCCT---TGGGCTTCSEEEEESC-CCSCC--GG-GTTCTTCCEEEEECT-TCBGGGSCCC-TT
T ss_pred hcCCccEEeccCCC--ccChH---HHhcCCCCCEEEccCC-CCCcc--hh-hhcCCCCCEEEeECC-ccCcccChhh-cC
Confidence 46789999999863 33211 1456889999999987 44432 22 235899999999984 5543222222 35
Q ss_pred CCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcC
Q 023403 91 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 170 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 170 (282)
+++|+.|+++++. +++.....+. .+++|++|++++|..+++.. ....+++|++|++++| .+++ +. ....+
T Consensus 111 l~~L~~L~Ls~n~--i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n-~i~~--~~-~l~~l 180 (197)
T 4ezg_A 111 LTSLTLLDISHSA--HDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFD-GVHD--YR-GIEDF 180 (197)
T ss_dssp CTTCCEEECCSSB--CBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTB-CCCC--CT-TGGGC
T ss_pred CCCCCEEEecCCc--cCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCC-CCcC--hH-HhccC
Confidence 7899999999954 6765555554 58999999999865355432 2446889999999995 5654 22 33468
Q ss_pred CCCCEEeecCCC
Q 023403 171 PHLRSLGLYYCR 182 (282)
Q Consensus 171 ~~L~~L~l~~~~ 182 (282)
++|+.|+++++.
T Consensus 181 ~~L~~L~l~~N~ 192 (197)
T 4ezg_A 181 PKLNQLYAFSQT 192 (197)
T ss_dssp SSCCEEEECBC-
T ss_pred CCCCEEEeeCcc
Confidence 999999999863
No 82
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.96 E-value=1.2e-12 Score=117.72 Aligned_cols=55 Identities=24% Similarity=0.183 Sum_probs=34.3
Q ss_pred cCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccchhhccCCCCcCCc
Q 023403 210 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTA 274 (282)
Q Consensus 210 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 274 (282)
...+++|++|++++| .+++... ..+..+++|+.|++++|. ++++. +..+...+++
T Consensus 466 ~~~l~~L~~L~l~~n-~l~~~~~-------~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L 520 (570)
T 2z63_A 466 FTELRNLTFLDLSQC-QLEQLSP-------TAFNSLSSLQVLNMASNQ-LKSVP-DGIFDRLTSL 520 (570)
T ss_dssp CTTCTTCCEEECTTS-CCCEECT-------TTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTC
T ss_pred hhcccCCCEEECCCC-ccccCCh-------hhhhcccCCCEEeCCCCc-CCCCC-HHHhhcccCC
Confidence 445689999999985 4543211 134577899999999984 55543 2334444443
No 83
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.95 E-value=3.2e-11 Score=110.88 Aligned_cols=36 Identities=11% Similarity=-0.015 Sum_probs=23.5
Q ss_pred cCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCC
Q 023403 214 EGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 214 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~ 257 (282)
++|++|++++| .++.... ..+..+++|++|+++++.
T Consensus 248 ~~L~~L~Ls~n-~l~~~~~-------~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 248 TNLTMLDLSYN-NLNVVGN-------DSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp SCCCEEECTTS-CCCEECT-------TTTTTCTTCCEEECCSCC
T ss_pred CCCCEEECCCC-CcCccCc-------ccccCcccccEeeCCCCc
Confidence 34888888884 4432111 124567889999999885
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.95 E-value=2.2e-11 Score=99.31 Aligned_cols=176 Identities=14% Similarity=0.086 Sum_probs=113.9
Q ss_pred CCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhC
Q 023403 39 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 118 (282)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 118 (282)
+++|++|.++++. ++. +..+ ..+++|++|+++++ .+... . ....+++|+.|+++++. ++..... ....+
T Consensus 40 l~~L~~L~l~~~~-i~~--~~~l-~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~L~~n~--l~~~~~~-~~~~l 108 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKS--VQGI-QYLPNVRYLALGGN-KLHDI--S-ALKELTNLTYLILTGNQ--LQSLPNG-VFDKL 108 (272)
T ss_dssp HTTCCEEECTTSC-CCC--CTTG-GGCTTCCEEECTTS-CCCCC--G-GGTTCTTCCEEECTTSC--CCCCCTT-TTTTC
T ss_pred ccceeeeeeCCCC-ccc--cccc-ccCCCCcEEECCCC-CCCCc--h-hhcCCCCCCEEECCCCc--cCccChh-HhcCC
Confidence 5789999999874 432 2222 35899999999985 44332 2 23468999999999964 5432221 12457
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcC
Q 023403 119 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVK 198 (282)
Q Consensus 119 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 198 (282)
++|++|++.+| .+.... ......+++|++|++++| .++... ......+++|+.|++++|. ++......
T Consensus 109 ~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~------- 176 (272)
T 3rfs_A 109 TNLKELVLVEN-QLQSLP-DGVFDKLTNLTYLNLAHN-QLQSLP-KGVFDKLTNLTELDLSYNQ-LQSLPEGV------- 176 (272)
T ss_dssp TTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTT-------
T ss_pred cCCCEEECCCC-cCCccC-HHHhccCCCCCEEECCCC-ccCccC-HHHhccCccCCEEECCCCC-cCccCHHH-------
Confidence 89999999985 454321 112346789999999995 565321 2223458999999999974 43211000
Q ss_pred CCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCC-CccCCCcceeeecCCC
Q 023403 199 NKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPA-LHTCSGRHSLVMSGCL 257 (282)
Q Consensus 199 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~-l~~~~~L~~L~l~~c~ 257 (282)
...+++|++|++++| .++.. .+. +..+++|+.|++++++
T Consensus 177 -----------~~~l~~L~~L~L~~N-~l~~~--------~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 177 -----------FDKLTQLKDLRLYQN-QLKSV--------PDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp -----------TTTCTTCCEEECCSS-CCSCC--------CTTTTTTCTTCCEEECCSSC
T ss_pred -----------hcCCccCCEEECCCC-cCCcc--------CHHHHhCCcCCCEEEccCCC
Confidence 123489999999994 45421 122 4567888999998765
No 85
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.93 E-value=4.1e-10 Score=101.77 Aligned_cols=101 Identities=26% Similarity=0.242 Sum_probs=44.4
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhc
Q 023403 64 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYG 143 (282)
Q Consensus 64 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 143 (282)
.+++|++|++++| .+..... ...+++|+.|++++|. +.+. .. ...+++|+.|++++| .+.+. .. ...
T Consensus 63 ~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~--l~~l--~~-l~~l~~L~~L~Ls~N-~l~~l--~~-l~~ 129 (605)
T 1m9s_A 63 YLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDENK--IKDL--SS-LKDLKKLKSLSLEHN-GISDI--NG-LVH 129 (605)
T ss_dssp GCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSSC--CCCC--TT-STTCTTCCEEECTTS-CCCCC--GG-GGG
T ss_pred cCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCCC--CCCC--hh-hccCCCCCEEEecCC-CCCCC--cc-ccC
Confidence 3555555555553 2221110 2335555555555532 3221 11 123455666666553 23321 11 224
Q ss_pred CCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCC
Q 023403 144 CPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 181 (282)
Q Consensus 144 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 181 (282)
+++|+.|++++| .+++. ..+..+++|+.|+|++|
T Consensus 130 l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 130 LPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS
T ss_pred CCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC
Confidence 555666666553 33321 12234556666666554
No 86
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=4e-08 Score=75.19 Aligned_cols=129 Identities=18% Similarity=0.230 Sum_probs=95.2
Q ss_pred hHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHH---cCCCCeEEEecCCcccccHHHHHHHHH---hCCCCCEEEecC
Q 023403 55 DRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG---FCRKLKILNLCGCVKAATDYALQAIGR---NCNQLQSLNLGW 128 (282)
Q Consensus 55 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~l~~---~~~~L~~L~l~~ 128 (282)
...+..+...+++|++|++++|..+++.....+.. ..++|+.|++++|. +++++...+.. ..++|++|++++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~--i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR--SNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC--CCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC--CChHHHHHHHHHHHhCCCcCEEECcC
Confidence 34566667778999999999854787776655543 45789999999954 88887766654 357899999998
Q ss_pred CCCCCHHHHHHHHh---cCCCCcEEEe--cCCCccCHHHHHHHHh---cCCCCCEEeecCCCCCcHHH
Q 023403 129 CEDVGDVGVMNLAY---GCPDLRSLDL--CGCVCITDDSVIALAN---GCPHLRSLGLYYCRNITDRA 188 (282)
Q Consensus 129 ~~~~~~~~~~~l~~---~~~~L~~L~l--~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~ 188 (282)
| .+++.+...+.. ..+.|++|++ ++ +.+++++...+.+ ..+.|++|++++| .+++.+
T Consensus 103 N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 103 N-FISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp S-CCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred C-cCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 4 689888766654 4568999999 66 5888887655443 4578999999886 465543
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.90 E-value=1.8e-11 Score=100.82 Aligned_cols=200 Identities=20% Similarity=0.199 Sum_probs=105.4
Q ss_pred ccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHH
Q 023403 9 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 88 (282)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 88 (282)
++++++++.+++++.. ++. ... ...+++++|+++++ .++......+ ..+++|++|+++++ .++.... .
T Consensus 6 ~~~l~~l~~l~~~~~~--l~~-ip~---~~~~~l~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~--~- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN--LTA-LPP---DLPKDTTILHLSEN-LLYTFSLATL-MPYTRLTQLNLDRA-ELTKLQV--D- 73 (290)
T ss_dssp EECSTTCCEEECTTSC--CSS-CCS---CCCTTCCEEECTTS-CCSEEEGGGG-TTCTTCCEEECTTS-CCCEEEC--C-
T ss_pred ccccCCccEEECCCCC--CCc-CCC---CCCCCCCEEEcCCC-cCCccCHHHh-hcCCCCCEEECCCC-ccCcccC--C-
Confidence 3567778888887652 221 111 11256888888876 3443222222 34778888888774 4432111 1
Q ss_pred HcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHh
Q 023403 89 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN 168 (282)
Q Consensus 89 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 168 (282)
..+++|+.|+++++. +.. +......+++|+.|+++++ .++.... ..+..+++|++|+++++ .++.-. .....
T Consensus 74 ~~l~~L~~L~Ls~N~--l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~ 145 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQ--LQS--LPLLGQTLPALTVLDVSFN-RLTSLPL-GALRGLGELQELYLKGN-ELKTLP-PGLLT 145 (290)
T ss_dssp SCCTTCCEEECCSSC--CSS--CCCCTTTCTTCCEEECCSS-CCCCCCS-STTTTCTTCCEEECTTS-CCCCCC-TTTTT
T ss_pred CCCCcCCEEECCCCc--CCc--CchhhccCCCCCEEECCCC-cCcccCH-HHHcCCCCCCEEECCCC-CCCccC-hhhcc
Confidence 356778888887743 431 1111234677888888764 3442111 11235677888888874 444211 12223
Q ss_pred cCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCC-CCccCCC
Q 023403 169 GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP-ALHTCSG 247 (282)
Q Consensus 169 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~-~l~~~~~ 247 (282)
.+++|+.|+++++. ++..... . ...+++|++|++++ +.++ ..| .+...++
T Consensus 146 ~l~~L~~L~L~~N~-l~~l~~~------------~------~~~l~~L~~L~L~~-N~l~---------~ip~~~~~~~~ 196 (290)
T 1p9a_G 146 PTPKLEKLSLANNN-LTELPAG------------L------LNGLENLDTLLLQE-NSLY---------TIPKGFFGSHL 196 (290)
T ss_dssp TCTTCCEEECTTSC-CSCCCTT------------T------TTTCTTCCEEECCS-SCCC---------CCCTTTTTTCC
T ss_pred cccCCCEEECCCCc-CCccCHH------------H------hcCcCCCCEEECCC-CcCC---------ccChhhccccc
Confidence 46778888887753 3310000 0 11236777777777 3443 112 2334456
Q ss_pred cceeeecCCC
Q 023403 248 RHSLVMSGCL 257 (282)
Q Consensus 248 L~~L~l~~c~ 257 (282)
|+.|.+++++
T Consensus 197 L~~l~L~~Np 206 (290)
T 1p9a_G 197 LPFAFLHGNP 206 (290)
T ss_dssp CSEEECCSCC
T ss_pred CCeEEeCCCC
Confidence 7777777655
No 88
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.90 E-value=1.2e-11 Score=103.85 Aligned_cols=104 Identities=14% Similarity=0.101 Sum_probs=49.9
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 92 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 92 (282)
++++.|+++++. +..... .....+++|++|++++| .++......+ ..+++|++|+++++ .+... .. ...+
T Consensus 54 ~~l~~L~l~~n~--i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l--~~--~~~~ 123 (332)
T 2ft3_A 54 PDTTLLDLQNND--ISELRK-DDFKGLQHLYALVLVNN-KISKIHEKAF-SPLRKLQKLYISKN-HLVEI--PP--NLPS 123 (332)
T ss_dssp TTCCEEECCSSC--CCEECT-TTTTTCTTCCEEECCSS-CCCEECGGGS-TTCTTCCEEECCSS-CCCSC--CS--SCCT
T ss_pred CCCeEEECCCCc--CCccCH-hHhhCCCCCcEEECCCC-ccCccCHhHh-hCcCCCCEEECCCC-cCCcc--Cc--cccc
Confidence 567777777652 221111 11244667777777765 3442222222 34677777777663 33210 00 0125
Q ss_pred CCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCC
Q 023403 93 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWC 129 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 129 (282)
+|+.|+++++. +..... .....+++|+.|+++++
T Consensus 124 ~L~~L~l~~n~--i~~~~~-~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 124 SLVELRIHDNR--IRKVPK-GVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp TCCEEECCSSC--CCCCCS-GGGSSCSSCCEEECCSC
T ss_pred cCCEEECCCCc--cCccCH-hHhCCCccCCEEECCCC
Confidence 66666666632 332111 11224566666666653
No 89
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.90 E-value=9.6e-12 Score=117.07 Aligned_cols=86 Identities=24% Similarity=0.191 Sum_probs=35.0
Q ss_pred hCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHH-HHHHcCCCCeEEEecCCcccccHHHHHHHHH
Q 023403 38 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALA-YLCGFCRKLKILNLCGCVKAATDYALQAIGR 116 (282)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 116 (282)
.+++|++|+|++| .+....... +..+++|++|++++| .+...... .....+++|+.|+++++. +..........
T Consensus 71 ~L~~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~--l~~~~~~~~~~ 145 (844)
T 3j0a_A 71 NLPNLRILDLGSS-KIYFLHPDA-FQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQ--IRSLYLHPSFG 145 (844)
T ss_dssp SCTTCCEEECTTC-CCCEECTTS-SCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCC--CCCCCCCGGGG
T ss_pred CCCCCCEEECCCC-cCcccCHhH-ccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCc--ccccccchhHh
Confidence 3455555555554 222211111 123555555555553 22211000 011234556666655532 32211111123
Q ss_pred hCCCCCEEEecC
Q 023403 117 NCNQLQSLNLGW 128 (282)
Q Consensus 117 ~~~~L~~L~l~~ 128 (282)
.+++|++|++++
T Consensus 146 ~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 146 KLNSLKSIDFSS 157 (844)
T ss_dssp TCSSCCEEEEES
T ss_pred hCCCCCEEECCC
Confidence 455566666655
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.89 E-value=3.9e-10 Score=101.93 Aligned_cols=168 Identities=21% Similarity=0.177 Sum_probs=115.7
Q ss_pred CCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHc
Q 023403 11 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 90 (282)
Q Consensus 11 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 90 (282)
.+++|+.|+++++....-+ . ...+++|++|+|++| .+..... +..+++|++|++++| .+... . ....
T Consensus 41 ~L~~L~~L~l~~n~i~~l~----~-l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l--~-~l~~ 107 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ----G-IQYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-KIKDL--S-SLKD 107 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT----T-GGGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCCCC--T-TSTT
T ss_pred cCCCCCEEECcCCCCCCCh----H-HccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-CCCCC--h-hhcc
Confidence 4678999999976422211 1 356899999999997 4443222 446899999999985 44332 1 2345
Q ss_pred CCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcC
Q 023403 91 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 170 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 170 (282)
+++|+.|+++++. +.+. .. ...+++|+.|++++| .+++. ..+..+++|+.|++++| .+++.. . +..+
T Consensus 108 l~~L~~L~Ls~N~--l~~l--~~-l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~--~-l~~l 174 (605)
T 1m9s_A 108 LKKLKSLSLEHNG--ISDI--NG-LVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIV--P-LAGL 174 (605)
T ss_dssp CTTCCEEECTTSC--CCCC--GG-GGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCG--G-GTTC
T ss_pred CCCCCEEEecCCC--CCCC--cc-ccCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCch--h-hccC
Confidence 8899999999964 5542 22 346899999999985 45543 23457899999999995 565422 2 4568
Q ss_pred CCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCC
Q 023403 171 PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT 225 (282)
Q Consensus 171 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 225 (282)
++|+.|+|++|. +++. .. +..+++|+.|++++|+
T Consensus 175 ~~L~~L~Ls~N~-i~~l--~~------------------l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 175 TKLQNLYLSKNH-ISDL--RA------------------LAGLKNLDVLELFSQE 208 (605)
T ss_dssp TTCCEEECCSSC-CCBC--GG------------------GTTCTTCSEEECCSEE
T ss_pred CCCCEEECcCCC-CCCC--hH------------------HccCCCCCEEEccCCc
Confidence 999999999974 4421 11 2334899999999853
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.87 E-value=3.8e-11 Score=98.09 Aligned_cols=195 Identities=20% Similarity=0.150 Sum_probs=118.0
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCC
Q 023403 40 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 119 (282)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 119 (282)
++|++|+++++ .++......+ ..+++|++|+++++ .+...... ....+++|+.|+++++. +....... ...++
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~--l~~~~~~~-~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSF-FSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGNP--IQSLALGA-FSGLS 100 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTT-TTCTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTCC--CCEECTTT-TTTCT
T ss_pred CCccEEECCCC-cccccCHhHh-ccccCCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCCc--cCccChhh-hcCCc
Confidence 47999999987 4553332222 35899999999985 44322111 12457899999999854 44322222 23578
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcH---HHHHHHHhcC
Q 023403 120 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITD---RAIYSLAQSG 196 (282)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~---~~~~~l~~~~ 196 (282)
+|++|++.++ .+...... ....+++|++|+++++ .++...+...+..+++|+.|++++|. ++. ..+..+...
T Consensus 101 ~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L- 175 (276)
T 2z62_A 101 SLQKLVAVET-NLASLENF-PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM- 175 (276)
T ss_dssp TCCEEECTTS-CCCCSTTC-CCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTC-
T ss_pred cccEEECCCC-CccccCch-hcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhc-
Confidence 9999999885 34321111 1336789999999995 55432223334568999999999974 432 222333211
Q ss_pred cCCCCcchhcccccCcccCcc-eEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccchhhccCCCCcCCc
Q 023403 197 VKNKPGIWESMKGRYDEEGLQ-SLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTA 274 (282)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 274 (282)
+.|. +|++++ +.++.. .+......+|+.|+++++. ++.+. ...+...+++
T Consensus 176 -----------------~~l~l~L~ls~-n~l~~~--------~~~~~~~~~L~~L~L~~n~-l~~~~-~~~~~~l~~L 226 (276)
T 2z62_A 176 -----------------PLLNLSLDLSL-NPMNFI--------QPGAFKEIRLKELALDTNQ-LKSVP-DGIFDRLTSL 226 (276)
T ss_dssp -----------------TTCCEEEECCS-SCCCEE--------CTTSSCSCCEEEEECCSSC-CSCCC-TTTTTTCCSC
T ss_pred -----------------cccceeeecCC-Cccccc--------CccccCCCcccEEECCCCc-eeecC-HhHhcccccc
Confidence 3333 899998 455421 1222234589999999987 66543 2233444443
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.87 E-value=8.6e-12 Score=101.67 Aligned_cols=131 Identities=18% Similarity=0.127 Sum_probs=59.6
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCC
Q 023403 40 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 119 (282)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 119 (282)
+++++|+++++ .++..... .+..+++|++|+++++ .+.... ......+++|+.|+++++. +..... .....++
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~l~~n~--l~~~~~-~~~~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSK-AFHRLTKLRLLYLNDN-KLQTLP-AGIFKELKNLETLWVTDNK--LQALPI-GVFDQLV 109 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTT-SSSSCTTCCEEECCSS-CCSCCC-TTTTSSCTTCCEEECCSSC--CCCCCT-TTTTTCS
T ss_pred CCCCEEECcCC-CCCeeCHH-HhcCCCCCCEEECCCC-ccCeeC-hhhhcCCCCCCEEECCCCc--CCcCCH-hHccccc
Confidence 35666666664 23321111 1223566666666653 332110 0111235666666666632 332111 1122356
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCC
Q 023403 120 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 181 (282)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 181 (282)
+|++|+++++ .+..... .....+++|++|+++++ .++... ......+++|++|+++++
T Consensus 110 ~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 110 NLAELRLDRN-QLKSLPP-RVFDSLTKLTYLSLGYN-ELQSLP-KGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp SCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCC-ccCeeCH-HHhCcCcCCCEEECCCC-cCCccC-HhHccCCcccceeEecCC
Confidence 6677776653 2332111 11234566777777664 343211 111234566777776665
No 93
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.86 E-value=6.4e-12 Score=105.52 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=53.8
Q ss_pred HccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHH
Q 023403 8 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 87 (282)
Q Consensus 8 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 87 (282)
.+.++++|+.|+++++ .++..... ....+++|++|++++| .++.-. . ...++|++|+++++ .+..... ..
T Consensus 73 ~~~~l~~L~~L~L~~n--~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~--~--~~~~~L~~L~l~~n-~i~~~~~-~~ 142 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNN--KISKIHEK-AFSPLRKLQKLYISKN-HLVEIP--P--NLPSSLVELRIHDN-RIRKVPK-GV 142 (332)
T ss_dssp TTTTCTTCCEEECCSS--CCCEECGG-GSTTCTTCCEEECCSS-CCCSCC--S--SCCTTCCEEECCSS-CCCCCCS-GG
T ss_pred HhhCCCCCcEEECCCC--ccCccCHh-HhhCcCCCCEEECCCC-cCCccC--c--cccccCCEEECCCC-ccCccCH-hH
Confidence 4678899999999986 33322112 2345789999999986 344211 1 11378999999874 4432111 11
Q ss_pred HHcCCCCeEEEecCCc
Q 023403 88 CGFCRKLKILNLCGCV 103 (282)
Q Consensus 88 ~~~~~~L~~L~l~~~~ 103 (282)
...+++|+.|+++++.
T Consensus 143 ~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNP 158 (332)
T ss_dssp GSSCSSCCEEECCSCC
T ss_pred hCCCccCCEEECCCCc
Confidence 2457889999988853
No 94
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.85 E-value=6.4e-10 Score=82.03 Aligned_cols=130 Identities=24% Similarity=0.287 Sum_probs=61.8
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCC
Q 023403 40 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 119 (282)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 119 (282)
++|++|++++| .+++..++..+..+++|++|++++| .+... .....+++|+.|+++++. ++.. +......++
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~--i~~~-~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNR--VSGG-LEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSC--CCSC-THHHHHHCT
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCc--ccch-HHHHhhhCC
Confidence 34555555554 2221111112223555666666553 33222 122335566666666643 3332 222233466
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHH--HHHHhcCCCCCEEeec
Q 023403 120 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSV--IALANGCPHLRSLGLY 179 (282)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l--~~l~~~~~~L~~L~l~ 179 (282)
+|++|++++| .+++.........+++|++|++++| .+++... ......+++|+.|+++
T Consensus 89 ~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 6777777664 3554322223345667777777774 4433211 1234456777777664
No 95
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.83 E-value=7.1e-10 Score=81.78 Aligned_cols=134 Identities=24% Similarity=0.281 Sum_probs=90.5
Q ss_pred cCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHH
Q 023403 10 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 89 (282)
Q Consensus 10 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 89 (282)
...++++.|+++++. +.+..+......+++|++|++++| .++.. ..+..+++|++|+++++ .+... +.....
T Consensus 14 ~~~~~l~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~ 85 (149)
T 2je0_A 14 RTPSDVKELVLDNSR--SNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDN-RVSGG-LEVLAE 85 (149)
T ss_dssp CCGGGCSEEECTTCB--CBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSS-CCCSC-THHHHH
T ss_pred CCCccCeEEEccCCc--CChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCC-cccch-HHHHhh
Confidence 345789999999873 331112223356889999999997 45543 33345899999999985 44432 233444
Q ss_pred cCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHH--HHHHhcCCCCcEEEecC
Q 023403 90 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGV--MNLAYGCPDLRSLDLCG 154 (282)
Q Consensus 90 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~~ 154 (282)
.+++|+.|+++++. +++.........+++|++|++++| .+++... ......+++|+.|++++
T Consensus 86 ~l~~L~~L~ls~N~--i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 86 KCPNLTHLNLSGNK--IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HCTTCCEEECTTSC--CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hCCCCCEEECCCCc--CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 58999999999954 666433233456899999999985 5554322 23445689999998864
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.81 E-value=5e-12 Score=101.14 Aligned_cols=130 Identities=14% Similarity=0.046 Sum_probs=54.6
Q ss_pred CccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCC
Q 023403 14 KLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRK 93 (282)
Q Consensus 14 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 93 (282)
+++.|+++++. ++.-. ......+++|++|++++|..++..... .+..+++|++|++++|+.+...... ....+++
T Consensus 32 ~l~~L~l~~n~--l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIETH--LRTIP-SHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPD-ALKELPL 106 (239)
T ss_dssp TCCEEEEESCC--CSEEC-TTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTT-SEECCTT
T ss_pred cccEEEEeCCc--ceEEC-HHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHH-HhCCCCC
Confidence 56666666542 22111 111233566666666665213211111 1123566666666653333211110 1123556
Q ss_pred CeEEEecCCcccccHHHHHHHHHhCCCCC---EEEecCCCCCCHHHHHHHHhcCCCCc-EEEecC
Q 023403 94 LKILNLCGCVKAATDYALQAIGRNCNQLQ---SLNLGWCEDVGDVGVMNLAYGCPDLR-SLDLCG 154 (282)
Q Consensus 94 L~~L~l~~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~~~~~~~~~~~l~~~~~~L~-~L~l~~ 154 (282)
|+.|+++++. +.. +.. ...+++|+ .|+++++..+..... .....+++|+ +|++++
T Consensus 107 L~~L~l~~n~--l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 107 LKFLGIFNTG--LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYN 165 (239)
T ss_dssp CCEEEEEEEC--CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCS
T ss_pred CCEEeCCCCC--Ccc--ccc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCC
Confidence 6666666532 322 111 22344555 666655323332110 0112345566 666655
No 97
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.80 E-value=1.8e-09 Score=97.08 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=19.5
Q ss_pred cccCcceEeccCCCCCCHHHHHHHHhhCC-C-CccCCCcceeeecCCCC
Q 023403 212 DEEGLQSLNISQCTALTPPAVQALCDTFP-A-LHTCSGRHSLVMSGCLN 258 (282)
Q Consensus 212 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~-~-l~~~~~L~~L~l~~c~~ 258 (282)
.+++|++|++++ +.++. .| . +..+++|+.|++++++.
T Consensus 471 ~l~~L~~L~L~~-N~l~~---------l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 471 HLQALQELNVAS-NQLKS---------VPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp SSCCCSEEECCS-SCCCC---------CCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCCCCEEECCC-CCCCC---------CCHHHHhcCCCCCEEEecCCCc
Confidence 345666666666 33431 11 1 34556666666666653
No 98
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.79 E-value=1.3e-11 Score=116.10 Aligned_cols=91 Identities=23% Similarity=0.163 Sum_probs=54.0
Q ss_pred HHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHH-HHHcCCCCcEEeccCCCCCCHHHHH
Q 023403 7 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA-LAHGCPNLTRLNISGCTSFSDHALA 85 (282)
Q Consensus 7 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~ 85 (282)
..++++++|+.|+++++. +...... ....+++|++|++++| .+.+..+.. .+..+++|++|+++++ .+......
T Consensus 67 ~~f~~L~~L~~L~Ls~N~--l~~~~p~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~ 141 (844)
T 3j0a_A 67 EAFRNLPNLRILDLGSSK--IYFLHPD-AFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLH 141 (844)
T ss_dssp TTTSSCTTCCEEECTTCC--CCEECTT-SSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCC
T ss_pred HHhcCCCCCCEEECCCCc--CcccCHh-HccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccc
Confidence 345678888888888763 3221111 2245788999999886 344321111 1235788888888875 33322111
Q ss_pred HHHHcCCCCeEEEecCC
Q 023403 86 YLCGFCRKLKILNLCGC 102 (282)
Q Consensus 86 ~~~~~~~~L~~L~l~~~ 102 (282)
.....+++|+.|+++++
T Consensus 142 ~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp GGGGTCSSCCEEEEESS
T ss_pred hhHhhCCCCCEEECCCC
Confidence 22345788888888874
No 99
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.79 E-value=1.9e-11 Score=99.65 Aligned_cols=181 Identities=15% Similarity=0.107 Sum_probs=112.7
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 92 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 92 (282)
++++.|+++++. +.... ......+++|++|+++++ .++... ..++..+++|++|+++++ .+..... .....++
T Consensus 37 ~~l~~L~l~~n~--l~~~~-~~~~~~l~~L~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQSNK--LSSLP-SKAFHRLTKLRLLYLNDN-KLQTLP-AGIFKELKNLETLWVTDN-KLQALPI-GVFDQLV 109 (270)
T ss_dssp TTCSEEECCSSC--CSCCC-TTSSSSCTTCCEEECCSS-CCSCCC-TTTTSSCTTCCEEECCSS-CCCCCCT-TTTTTCS
T ss_pred CCCCEEECcCCC--CCeeC-HHHhcCCCCCCEEECCCC-ccCeeC-hhhhcCCCCCCEEECCCC-cCCcCCH-hHccccc
Confidence 579999999863 33211 112345789999999986 343211 223345899999999985 4432211 1224578
Q ss_pred CCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCC
Q 023403 93 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH 172 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 172 (282)
+|+.|+++++. ++...... ...+++|++|+++++ .+..... .....+++|++|+++++ .++.... ..+..+++
T Consensus 110 ~L~~L~l~~n~--l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~ 182 (270)
T 2o6q_A 110 NLAELRLDRNQ--LKSLPPRV-FDSLTKLTYLSLGYN-ELQSLPK-GVFDKLTSLKELRLYNN-QLKRVPE-GAFDKLTE 182 (270)
T ss_dssp SCCEEECCSSC--CCCCCTTT-TTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTT
T ss_pred CCCEEECCCCc--cCeeCHHH-hCcCcCCCEEECCCC-cCCccCH-hHccCCcccceeEecCC-cCcEeCh-hHhccCCC
Confidence 99999999854 44322211 245789999999985 4543211 12346789999999995 5543211 12345789
Q ss_pred CCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCC
Q 023403 173 LRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTA 226 (282)
Q Consensus 173 L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 226 (282)
|++|++++|. ++...... ...+++|++|++++++.
T Consensus 183 L~~L~L~~N~-l~~~~~~~------------------~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 183 LKTLKLDNNQ-LKRVPEGA------------------FDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCEEECCSSC-CSCCCTTT------------------TTTCTTCCEEECCSSCB
T ss_pred cCEEECCCCc-CCcCCHHH------------------hccccCCCEEEecCCCe
Confidence 9999999974 43111000 12348999999998653
No 100
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.71 E-value=5.4e-10 Score=84.21 Aligned_cols=134 Identities=22% Similarity=0.184 Sum_probs=81.0
Q ss_pred CCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhC
Q 023403 39 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 118 (282)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 118 (282)
.++|++|++++| .+++..++..+..+++|++|++++| .+... .....+++|+.|+++++. +... +......+
T Consensus 23 ~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N~--l~~~-~~~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSENR--IFGG-LDMLAEKL 94 (168)
T ss_dssp TTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESCC--CCSC-CCHHHHHC
T ss_pred cccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCCc--CchH-HHHHHhhC
Confidence 356888888776 3432222222345678888888775 34332 223456788888888754 4432 22333458
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHH--HHHHhcCCCCCEEeecCCC
Q 023403 119 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSV--IALANGCPHLRSLGLYYCR 182 (282)
Q Consensus 119 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l--~~l~~~~~~L~~L~l~~~~ 182 (282)
++|+.|++++| .+++.........+++|+.|++++| .++.... ...+..+++|++|++++|.
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 88888888875 4554221122346788999999885 4543221 1345568899999988874
No 101
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.68 E-value=1.3e-09 Score=98.02 Aligned_cols=166 Identities=13% Similarity=0.032 Sum_probs=84.7
Q ss_pred hCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCH-HHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHH
Q 023403 38 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR 116 (282)
Q Consensus 38 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 116 (282)
.+++|++|++++| .+++..+..+ ..+++|++|+++++ .+.. ..+......+++|+.|+++++. +..........
T Consensus 351 ~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~ 425 (562)
T 3a79_B 351 SPSSFTFLNFTQN-VFTDSVFQGC-STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS--LNSHAYDRTCA 425 (562)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTTC-CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC--CBSCCSSCCCC
T ss_pred CCCCceEEECCCC-ccccchhhhh-cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc--CCCccChhhhc
Confidence 3556666666665 3333222212 24566777777663 3332 1222222346667777776643 33211111122
Q ss_pred hCCCCCEEEecCCCCCCHHHHHHHHhcC-CCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhc
Q 023403 117 NCNQLQSLNLGWCEDVGDVGVMNLAYGC-PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQS 195 (282)
Q Consensus 117 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 195 (282)
.+++|+.|++++| .+++. +...+ ++|++|++++| .++. +..-...+++|++|++++|. ++.....
T Consensus 426 ~l~~L~~L~l~~n-~l~~~----~~~~l~~~L~~L~L~~N-~l~~--ip~~~~~l~~L~~L~L~~N~-l~~l~~~----- 491 (562)
T 3a79_B 426 WAESILVLNLSSN-MLTGS----VFRCLPPKVKVLDLHNN-RIMS--IPKDVTHLQALQELNVASNQ-LKSVPDG----- 491 (562)
T ss_dssp CCTTCCEEECCSS-CCCGG----GGSSCCTTCSEEECCSS-CCCC--CCTTTTSSCCCSEEECCSSC-CCCCCTT-----
T ss_pred CcccCCEEECCCC-CCCcc----hhhhhcCcCCEEECCCC-cCcc--cChhhcCCCCCCEEECCCCC-CCCCCHH-----
Confidence 3566777777664 34432 12223 46777777774 4441 22111246677777777753 3210000
Q ss_pred CcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHH
Q 023403 196 GVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQAL 235 (282)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 235 (282)
....+++|++|++++|+...+-.+.++
T Consensus 492 -------------~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 492 -------------VFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp -------------STTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred -------------HHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 023458999999999777666555555
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.67 E-value=8.2e-10 Score=83.17 Aligned_cols=132 Identities=20% Similarity=0.185 Sum_probs=68.0
Q ss_pred CCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCC
Q 023403 92 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP 171 (282)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 171 (282)
++|+.|++++|. +.+..+......+++|+.|++.+| .+.+. .....+++|++|++++| .++.. +......++
T Consensus 24 ~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHCT
T ss_pred ccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHhhCC
Confidence 455666655533 331111111234566777777664 24432 22234567777777774 44432 334444577
Q ss_pred CCCEEeecCCCCCcHH-HHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHH--HHHHhhCCCCccCCCc
Q 023403 172 HLRSLGLYYCRNITDR-AIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAV--QALCDTFPALHTCSGR 248 (282)
Q Consensus 172 ~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~l~~~~~~l~~~~~L 248 (282)
+|++|++++|. +++. .+.. ...+++|++|++++| .++.... ... +..+++|
T Consensus 96 ~L~~L~Ls~N~-l~~~~~~~~------------------l~~l~~L~~L~l~~N-~l~~~~~~~~~~------~~~l~~L 149 (168)
T 2ell_A 96 NLTHLNLSGNK-LKDISTLEP------------------LKKLECLKSLDLFNC-EVTNLNDYRESV------FKLLPQL 149 (168)
T ss_dssp TCCEEECBSSS-CCSSGGGGG------------------GSSCSCCCEEECCSS-GGGTSTTHHHHH------HTTCSSC
T ss_pred CCCEEeccCCc-cCcchhHHH------------------HhcCCCCCEEEeeCC-cCcchHHHHHHH------HHhCccC
Confidence 77888777763 3321 1111 223477888888874 3332211 011 1256677
Q ss_pred ceeeecCCC
Q 023403 249 HSLVMSGCL 257 (282)
Q Consensus 249 ~~L~l~~c~ 257 (282)
+.|++++|.
T Consensus 150 ~~L~l~~n~ 158 (168)
T 2ell_A 150 TYLDGYDRE 158 (168)
T ss_dssp CEETTEETT
T ss_pred cEecCCCCC
Confidence 888888776
No 103
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.63 E-value=8.2e-09 Score=93.50 Aligned_cols=50 Identities=26% Similarity=0.360 Sum_probs=24.0
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISG 75 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 75 (282)
++|+.|+++++. ++. +...+++|++|++++|. ++. ++. .+++|++|++++
T Consensus 61 ~~L~~L~L~~N~--l~~-----lp~~l~~L~~L~Ls~N~-l~~--lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 61 AHITTLVIPDNN--LTS-----LPALPPELRTLEVSGNQ-LTS--LPV---LPPGLLELSIFS 110 (622)
T ss_dssp TTCSEEEECSCC--CSC-----CCCCCTTCCEEEECSCC-CSC--CCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCC--CCC-----CCCcCCCCCEEEcCCCc-CCc--CCC---CCCCCCEEECcC
Confidence 466666666552 221 11134566666666652 321 111 345666666655
No 104
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.62 E-value=3.2e-10 Score=93.32 Aligned_cols=184 Identities=21% Similarity=0.192 Sum_probs=115.8
Q ss_pred CCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcC
Q 023403 12 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 91 (282)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 91 (282)
.++++.|+++++. ++.... .....+++|++|+++++ .++..... ..+++|++|+++++ .+.. +......+
T Consensus 30 ~~~l~~L~L~~N~--l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~---~~l~~L~~L~Ls~N-~l~~--l~~~~~~l 99 (290)
T 1p9a_G 30 PKDTTILHLSENL--LYTFSL-ATLMPYTRLTQLNLDRA-ELTKLQVD---GTLPVLGTLDLSHN-QLQS--LPLLGQTL 99 (290)
T ss_dssp CTTCCEEECTTSC--CSEEEG-GGGTTCTTCCEEECTTS-CCCEEECC---SCCTTCCEEECCSS-CCSS--CCCCTTTC
T ss_pred CCCCCEEEcCCCc--CCccCH-HHhhcCCCCCEEECCCC-ccCcccCC---CCCCcCCEEECCCC-cCCc--CchhhccC
Confidence 3689999999873 332211 22355789999999987 45432211 35899999999985 4432 12223457
Q ss_pred CCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCC
Q 023403 92 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP 171 (282)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 171 (282)
++|+.|+++++. ++...... +..+++|+.|+++++ .+.... ......+++|+.|+++++ .++.- .......++
T Consensus 100 ~~L~~L~l~~N~--l~~l~~~~-~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~l~ 172 (290)
T 1p9a_G 100 PALTVLDVSFNR--LTSLPLGA-LRGLGELQELYLKGN-ELKTLP-PGLLTPTPKLEKLSLANN-NLTEL-PAGLLNGLE 172 (290)
T ss_dssp TTCCEEECCSSC--CCCCCSST-TTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTS-CCSCC-CTTTTTTCT
T ss_pred CCCCEEECCCCc--CcccCHHH-HcCCCCCCEEECCCC-CCCccC-hhhcccccCCCEEECCCC-cCCcc-CHHHhcCcC
Confidence 899999999853 54322111 235789999999985 454321 122345789999999995 56521 122334578
Q ss_pred CCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHH
Q 023403 172 HLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAV 232 (282)
Q Consensus 172 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 232 (282)
+|+.|+++++. ++. +.. .....++|++|++++++..-+..+
T Consensus 173 ~L~~L~L~~N~-l~~-----ip~--------------~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 173 NLDTLLLQENS-LYT-----IPK--------------GFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp TCCEEECCSSC-CCC-----CCT--------------TTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCCEEECCCCc-CCc-----cCh--------------hhcccccCCeEEeCCCCccCcCcc
Confidence 99999999974 431 000 022237899999998765543333
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.58 E-value=6.2e-10 Score=89.58 Aligned_cols=178 Identities=16% Similarity=0.109 Sum_probs=103.2
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 92 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 92 (282)
.+.+.+++++.. +.. ... ...+.+++|+++++ .++...... +..+++|++|+++++ .+...... ....++
T Consensus 14 ~~~~~l~~~~~~--l~~-~p~---~~~~~l~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~ 83 (251)
T 3m19_A 14 EGKKEVDCQGKS--LDS-VPS---GIPADTEKLDLQST-GLATLSDAT-FRGLTKLTWLNLDYN-QLQTLSAG-VFDDLT 83 (251)
T ss_dssp GGGTEEECTTCC--CSS-CCS---CCCTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECTTS-CCCCCCTT-TTTTCT
T ss_pred CCCeEEecCCCC--ccc-cCC---CCCCCCCEEEccCC-CcCccCHhH-hcCcccCCEEECCCC-cCCccCHh-HhccCC
Confidence 346778877652 221 111 11257999999986 444322222 235799999999884 44332111 123578
Q ss_pred CCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCC
Q 023403 93 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH 172 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 172 (282)
+|+.|+++++. ++.... .....+++|++|+++++ .++.... .....+++|++|+++++ .++... ...+..+++
T Consensus 84 ~L~~L~L~~n~--l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~ 156 (251)
T 3m19_A 84 ELGTLGLANNQ--LASLPL-GVFDHLTQLDKLYLGGN-QLKSLPS-GVFDRLTKLKELRLNTN-QLQSIP-AGAFDKLTN 156 (251)
T ss_dssp TCCEEECTTSC--CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTT
T ss_pred cCCEEECCCCc--ccccCh-hHhcccCCCCEEEcCCC-cCCCcCh-hHhccCCcccEEECcCC-cCCccC-HHHcCcCcC
Confidence 99999998853 443221 12235788999999875 4542211 12235788999999885 555321 112345788
Q ss_pred CCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCC
Q 023403 173 LRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTA 226 (282)
Q Consensus 173 L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 226 (282)
|+.|+++++. ++...... ...+++|++|++++|+.
T Consensus 157 L~~L~L~~N~-l~~~~~~~------------------~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 157 LQTLSLSTNQ-LQSVPHGA------------------FDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCEEECCSSC-CSCCCTTT------------------TTTCTTCCEEECCSCCB
T ss_pred CCEEECCCCc-CCccCHHH------------------HhCCCCCCEEEeeCCce
Confidence 9999998864 33110001 22338899999998543
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.57 E-value=9.7e-09 Score=83.19 Aligned_cols=55 Identities=20% Similarity=0.150 Sum_probs=24.1
Q ss_pred CCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecC
Q 023403 39 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCG 101 (282)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 101 (282)
+++|++|++++| .++.. .. +..+++|++|+++++ .+..... ...+++|+.|++++
T Consensus 40 l~~L~~L~l~~n-~i~~l--~~-l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 40 LSGVQNFNGDNS-NIQSL--AG-MQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNR 94 (263)
T ss_dssp HTTCSEEECTTS-CCCCC--TT-GGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCS
T ss_pred cCcCcEEECcCC-Ccccc--hH-HhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCC
Confidence 355666666554 23221 11 123555555555553 2222111 23345555555555
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.57 E-value=1.1e-08 Score=82.96 Aligned_cols=146 Identities=17% Similarity=0.114 Sum_probs=102.1
Q ss_pred cCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHH
Q 023403 10 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 89 (282)
Q Consensus 10 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 89 (282)
..+++|+.|+++++. +..- . -...+++|++|++++| .+++... +..+++|++|+++++ .++.. ... .
T Consensus 38 ~~l~~L~~L~l~~n~--i~~l--~-~l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~l--~~~-~ 104 (263)
T 1xeu_A 38 KELSGVQNFNGDNSN--IQSL--A-GMQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKNL--NGI-P 104 (263)
T ss_dssp HHHTTCSEEECTTSC--CCCC--T-TGGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSCC--TTC-C
T ss_pred hhcCcCcEEECcCCC--cccc--h-HHhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCCc--Ccc-c
Confidence 457899999999873 3321 1 2356899999999997 4553322 446899999999985 44331 112 1
Q ss_pred cCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhc
Q 023403 90 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG 169 (282)
Q Consensus 90 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 169 (282)
. ++|+.|+++++. +++. .. ...+++|+.|+++++ .+++.. ....+++|++|++++| .+++. .....
T Consensus 105 ~-~~L~~L~L~~N~--l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~L~~L~L~~N-~i~~~---~~l~~ 170 (263)
T 1xeu_A 105 S-ACLSRLFLDNNE--LRDT--DS-LIHLKNLEILSIRNN-KLKSIV---MLGFLSKLEVLDLHGN-EITNT---GGLTR 170 (263)
T ss_dssp C-SSCCEEECCSSC--CSBS--GG-GTTCTTCCEEECTTS-CCCBCG---GGGGCTTCCEEECTTS-CCCBC---TTSTT
T ss_pred c-CcccEEEccCCc--cCCC--hh-hcCcccccEEECCCC-cCCCCh---HHccCCCCCEEECCCC-cCcch---HHhcc
Confidence 2 799999999964 5542 22 346899999999985 566532 2446899999999995 66543 23345
Q ss_pred CCCCCEEeecCCC
Q 023403 170 CPHLRSLGLYYCR 182 (282)
Q Consensus 170 ~~~L~~L~l~~~~ 182 (282)
+++|+.|+++++.
T Consensus 171 l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 171 LKKVNWIDLTGQK 183 (263)
T ss_dssp CCCCCEEEEEEEE
T ss_pred CCCCCEEeCCCCc
Confidence 8999999999864
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.56 E-value=6.9e-10 Score=89.32 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=100.6
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 92 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 92 (282)
++++.|+++++. +..... .....+++|++|++++| .++.... ..+..+++|++|+++++ .+..... .....++
T Consensus 35 ~~l~~L~L~~n~--l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQSTG--LATLSD-ATFRGLTKLTWLNLDYN-QLQTLSA-GVFDDLTELGTLGLANN-QLASLPL-GVFDHLT 107 (251)
T ss_dssp TTCCEEECTTSC--CCCCCT-TTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCT
T ss_pred CCCCEEEccCCC--cCccCH-hHhcCcccCCEEECCCC-cCCccCH-hHhccCCcCCEEECCCC-cccccCh-hHhcccC
Confidence 589999999873 332111 12345789999999997 4443222 22345899999999985 4442211 1224578
Q ss_pred CCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCC
Q 023403 93 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH 172 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 172 (282)
+|+.|+++++. ++.... .....+++|+.|+++++ .+..... .....+++|++|+++++ .++... ......+++
T Consensus 108 ~L~~L~L~~N~--l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~ 180 (251)
T 3m19_A 108 QLDKLYLGGNQ--LKSLPS-GVFDRLTKLKELRLNTN-QLQSIPA-GAFDKLTNLQTLSLSTN-QLQSVP-HGAFDRLGK 180 (251)
T ss_dssp TCCEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTT
T ss_pred CCCEEEcCCCc--CCCcCh-hHhccCCcccEEECcCC-cCCccCH-HHcCcCcCCCEEECCCC-cCCccC-HHHHhCCCC
Confidence 99999999853 553221 12235789999999985 4553211 12336789999999995 555321 123345789
Q ss_pred CCEEeecCCC
Q 023403 173 LRSLGLYYCR 182 (282)
Q Consensus 173 L~~L~l~~~~ 182 (282)
|+.|+++++.
T Consensus 181 L~~L~l~~N~ 190 (251)
T 3m19_A 181 LQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSCC
T ss_pred CCEEEeeCCc
Confidence 9999999975
No 109
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.55 E-value=1.1e-06 Score=67.17 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhC---CCCCEEEecCCCCCCHHHHHHHH---hcCCCCcEEEecCC
Q 023403 82 HALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC---NQLQSLNLGWCEDVGDVGVMNLA---YGCPDLRSLDLCGC 155 (282)
Q Consensus 82 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~---~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~ 155 (282)
..+..+...-+.|+.|+++++ +.+++++...+++.+ ..|++|++.+| .+++.+...+. ..-..|++|++++
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~n-n~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~- 107 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNM-KRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES- 107 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTC-CSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS-
T ss_pred HHHHHHHhcCCCccEEECCCC-CCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC-
Confidence 344455555567777777652 136666666665543 45777777763 56666544333 2345677777777
Q ss_pred CccCHHHHHHHHhcC---CCCCEEeecCCC--CCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccC
Q 023403 156 VCITDDSVIALANGC---PHLRSLGLYYCR--NITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQ 223 (282)
Q Consensus 156 ~~l~~~~l~~l~~~~---~~L~~L~l~~~~--~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (282)
+.+++.+...+.+.+ +.|++|+++.+. .+.+.+...+.+. +...++|++|+++.
T Consensus 108 N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a--------------L~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 108 NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA--------------IEENESLLRVGISF 166 (197)
T ss_dssp SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH--------------HHHCSSCCEEECCC
T ss_pred CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH--------------HHhCCCcCeEeccC
Confidence 467777777666644 357777776542 3555443333322 11226677777765
No 110
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.47 E-value=7e-08 Score=87.45 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=23.7
Q ss_pred ccCcceEeccCCCCCCHHHHHHHHhhCC-CCccCCCcceeeecCCC
Q 023403 213 EEGLQSLNISQCTALTPPAVQALCDTFP-ALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 213 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~-~l~~~~~L~~L~l~~c~ 257 (282)
+++|++|++++| .++. .| .+..+++|+.|++++++
T Consensus 260 ~~~L~~L~Ls~N-~L~~---------lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 260 PSGLLSLSVYRN-QLTR---------LPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CTTCCEEECCSS-CCCS---------CCGGGGGSCTTCEEECCSCC
T ss_pred cccCcEEeCCCC-CCCc---------CCHHHhhccccCEEEecCCC
Confidence 367888888884 5541 12 24567788888888886
No 111
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.43 E-value=1.8e-10 Score=92.03 Aligned_cols=186 Identities=15% Similarity=0.071 Sum_probs=110.3
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCC
Q 023403 40 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 119 (282)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 119 (282)
++|++|+++++ .++..... .+..+++|++|+++++..++..... ....+++|+.|++++|.. +...... .+..++
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~-l~~i~~~-~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRN-LTYIDPD-ALKELP 105 (239)
T ss_dssp TTCCEEEEESC-CCSEECTT-TTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETT-CCEECTT-SEECCT
T ss_pred CcccEEEEeCC-cceEECHH-HccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCC-eeEcCHH-HhCCCC
Confidence 47999999986 45432222 2335899999999986424321111 123578999999986321 3321111 123578
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCc---EEEecCCCccCHHHHHHHHhcCCCCC-EEeecCCCCCcHHHHHHHHhc
Q 023403 120 QLQSLNLGWCEDVGDVGVMNLAYGCPDLR---SLDLCGCVCITDDSVIALANGCPHLR-SLGLYYCRNITDRAIYSLAQS 195 (282)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~~~l~~~~l~~l~~~~~~L~-~L~l~~~~~l~~~~~~~l~~~ 195 (282)
+|++|+++++ .+.. +.. ...++.|+ +|+++++..++.-. .....++++|+ .|+++++. ++.... .
T Consensus 106 ~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n~-l~~i~~-~---- 174 (239)
T 2xwt_C 106 LLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNNG-FTSVQG-Y---- 174 (239)
T ss_dssp TCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSCC-CCEECT-T----
T ss_pred CCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCCC-CcccCH-h----
Confidence 9999999875 3443 111 33566777 99999953554211 11224578999 99999864 331000 0
Q ss_pred CcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccC-CCcceeeecCCCCccchh
Q 023403 196 GVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTC-SGRHSLVMSGCLNLTSVH 263 (282)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~-~~L~~L~l~~c~~~~~~~ 263 (282)
....++|++|++++|..++..... .+..+ ++|+.|+++++. ++.+.
T Consensus 175 --------------~~~~~~L~~L~L~~n~~l~~i~~~-------~~~~l~~~L~~L~l~~N~-l~~l~ 221 (239)
T 2xwt_C 175 --------------AFNGTKLDAVYLNKNKYLTVIDKD-------AFGGVYSGPSLLDVSQTS-VTALP 221 (239)
T ss_dssp --------------TTTTCEEEEEECTTCTTCCEECTT-------TTTTCSBCCSEEECTTCC-CCCCC
T ss_pred --------------hcCCCCCCEEEcCCCCCcccCCHH-------HhhccccCCcEEECCCCc-cccCC
Confidence 001167999999986546532111 13456 788999998865 45443
No 112
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.41 E-value=4.2e-06 Score=64.01 Aligned_cols=126 Identities=11% Similarity=0.129 Sum_probs=93.1
Q ss_pred CChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHH---cCCCCeEEEecCCcccccHHHHHHHHHh---CCCCCEEEe
Q 023403 53 LSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG---FCRKLKILNLCGCVKAATDYALQAIGRN---CNQLQSLNL 126 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~l~~~---~~~L~~L~l 126 (282)
..+..+..+...-+.|++|+++++..+++.....+.. .-..|+.|++++|. +++.+...++.. -+.|++|++
T Consensus 28 ~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~--igd~ga~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 28 DVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA--ISDSEARGLIELIETSPSLRVLNV 105 (197)
T ss_dssp CHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC--CBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred CHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC--CChHHHHHHHHHHhcCCccCeEec
Confidence 3345666677667899999998755888776655543 34689999999955 898887766643 478999999
Q ss_pred cCCCCCCHHHHHHHHhcC---CCCcEEEecCCC--ccCHHHHHHH---HhcCCCCCEEeecCC
Q 023403 127 GWCEDVGDVGVMNLAYGC---PDLRSLDLCGCV--CITDDSVIAL---ANGCPHLRSLGLYYC 181 (282)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~---~~L~~L~l~~~~--~l~~~~l~~l---~~~~~~L~~L~l~~~ 181 (282)
++ +.+++.+...+...+ ..|++|+++++. .+.+.+...+ ++.-+.|++|+++.+
T Consensus 106 ~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 106 ES-NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CS-SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CC-CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 98 579998888776543 579999998642 5676654433 344578999999874
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.39 E-value=1.3e-10 Score=98.34 Aligned_cols=161 Identities=13% Similarity=0.000 Sum_probs=72.8
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 92 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 92 (282)
+++++|+|+++ .++. .....+..+++|++|+|++|...+.. ....+..+++++++...+++.+..... .....++
T Consensus 30 ~~l~~L~Ls~N--~i~~-i~~~~f~~l~~L~~L~Ls~N~i~~~i-~~~~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVLT--KLRV-IQKGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLP 104 (350)
T ss_dssp TTCSEEEEESC--CCSE-ECTTSSTTCTTCCEEEEECCTTCCEE-CTTSBCSCTTCCEEEEEEETTCCEECT-TSBCCCT
T ss_pred CCCCEEEccCC--cCCC-cCHHHHcCCCCCCEEECcCCCCCCcc-ChhHhhcchhhhhhhcccCCcccccCc-hhhhhcc
Confidence 47888888876 3331 11122345778888888886432211 111223456666544433334432111 1123467
Q ss_pred CCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCC
Q 023403 93 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH 172 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 172 (282)
+|+.|+++++. +........ ....++..|++.++..+.......+......++.|+++++ .++. +..-.....+
T Consensus 105 ~L~~L~l~~n~--l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~--i~~~~f~~~~ 178 (350)
T 4ay9_X 105 NLQYLLISNTG--IKHLPDVHK-IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQE--IHNSAFNGTQ 178 (350)
T ss_dssp TCCEEEEEEEC--CSSCCCCTT-CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCE--ECTTSSTTEE
T ss_pred ccccccccccc--cccCCchhh-cccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccC--CChhhccccc
Confidence 88888887632 322110000 1123455666655444332111111111234666777663 4431 1111112345
Q ss_pred CCEEeecCCCCC
Q 023403 173 LRSLGLYYCRNI 184 (282)
Q Consensus 173 L~~L~l~~~~~l 184 (282)
|+++.+.+++.+
T Consensus 179 L~~l~l~~~n~l 190 (350)
T 4ay9_X 179 LDELNLSDNNNL 190 (350)
T ss_dssp EEEEECTTCTTC
T ss_pred hhHHhhccCCcc
Confidence 666666654433
No 114
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.33 E-value=1.3e-08 Score=92.44 Aligned_cols=131 Identities=20% Similarity=0.148 Sum_probs=58.2
Q ss_pred CccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCC
Q 023403 41 DLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQ 120 (282)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 120 (282)
.+++|+|+++ .++.-.... +..+++|++|++++| .++..... ....+++|++|+++++. +...... .+..+++
T Consensus 53 ~~~~LdLs~N-~i~~l~~~~-f~~l~~L~~L~Ls~N-~i~~i~~~-~f~~L~~L~~L~Ls~N~--l~~l~~~-~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFN-PLRHLGSYS-FFSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGNP--IQSLALG-AFSGLSS 125 (635)
T ss_dssp TCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTC-CCCEECTT-TTTTCTTCCEEECTTCC--CCEECGG-GGTTCTT
T ss_pred CCCEEEeeCC-CCCCCCHHH-HhCCCCCCEEECCCC-cCCCcChh-HhcCCCCCCEEEccCCc--CCCCCHH-HhcCCCC
Confidence 4666666654 333211111 123566666666653 33211100 11235566666666632 3321111 1234566
Q ss_pred CCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCC
Q 023403 121 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 181 (282)
Q Consensus 121 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 181 (282)
|++|+++++ .+..... ..+..+++|++|+++++ .++...+......+++|++|+++++
T Consensus 126 L~~L~Ls~N-~l~~l~~-~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 126 LQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCC-cCCCCCh-hhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc
Confidence 666666654 2332110 01224556666666663 3332112223334566666666665
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.33 E-value=1.5e-07 Score=82.25 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=15.2
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS 50 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 50 (282)
++|++|+++++. ++. . .. ...+++|++|++++|
T Consensus 131 ~~L~~L~L~~n~--l~~-l-p~-~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 131 PLLEYLGVSNNQ--LEK-L-PE-LQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCCEEECCSSC--CSS-C-CC-CTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCC--CCC-C-cc-cCCCCCCCEEECCCC
Confidence 456666666542 221 1 11 233455555555554
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.31 E-value=4.2e-08 Score=74.34 Aligned_cols=34 Identities=9% Similarity=0.188 Sum_probs=15.2
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecC
Q 023403 65 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCG 101 (282)
Q Consensus 65 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 101 (282)
+++|++|+++++ .++. +..+....++|+.|++++
T Consensus 18 ~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~ 51 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSD 51 (176)
T ss_dssp TTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCS
T ss_pred cCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCC
Confidence 455666666653 3321 111222223555555555
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.30 E-value=1.6e-07 Score=84.13 Aligned_cols=133 Identities=19% Similarity=0.092 Sum_probs=75.0
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 92 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 92 (282)
.+++.|+++++ .++. .... .+++|++|++++| .++. ++ ..+++|++|+++++ .++. +..+ ..
T Consensus 59 ~~L~~L~Ls~n--~L~~-lp~~---l~~~L~~L~Ls~N-~l~~--ip---~~l~~L~~L~Ls~N-~l~~--ip~l---~~ 120 (571)
T 3cvr_A 59 NQFSELQLNRL--NLSS-LPDN---LPPQITVLEITQN-ALIS--LP---ELPASLEYLDACDN-RLST--LPEL---PA 120 (571)
T ss_dssp TTCSEEECCSS--CCSC-CCSC---CCTTCSEEECCSS-CCSC--CC---CCCTTCCEEECCSS-CCSC--CCCC---CT
T ss_pred CCccEEEeCCC--CCCc-cCHh---HcCCCCEEECcCC-CCcc--cc---cccCCCCEEEccCC-CCCC--cchh---hc
Confidence 37778888765 2322 1111 1367888888876 3442 22 23678888888774 4432 1111 22
Q ss_pred CCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCC
Q 023403 93 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH 172 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 172 (282)
+|+.|+++++. ++. +.. .+++|+.|+++++ .++. +...+++|++|++++| .++. +..+ .++
T Consensus 121 ~L~~L~Ls~N~--l~~--lp~---~l~~L~~L~Ls~N-~l~~-----lp~~l~~L~~L~Ls~N-~L~~--lp~l---~~~ 181 (571)
T 3cvr_A 121 SLKHLDVDNNQ--LTM--LPE---LPALLEYINADNN-QLTM-----LPELPTSLEVLSVRNN-QLTF--LPEL---PES 181 (571)
T ss_dssp TCCEEECCSSC--CSC--CCC---CCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSC--CCCC---CTT
T ss_pred CCCEEECCCCc--CCC--CCC---cCccccEEeCCCC-ccCc-----CCCcCCCcCEEECCCC-CCCC--cchh---hCC
Confidence 78888887743 443 111 4677888888774 3442 1114567888888874 4443 2221 167
Q ss_pred CCEEeecCCC
Q 023403 173 LRSLGLYYCR 182 (282)
Q Consensus 173 L~~L~l~~~~ 182 (282)
|+.|++++|.
T Consensus 182 L~~L~Ls~N~ 191 (571)
T 3cvr_A 182 LEALDVSTNL 191 (571)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECcCCC
Confidence 8888887763
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.30 E-value=5e-07 Score=78.98 Aligned_cols=76 Identities=12% Similarity=0.038 Sum_probs=37.0
Q ss_pred CCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcC
Q 023403 12 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 91 (282)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 91 (282)
.++|+.|+++++. +.. +.. ...+++|++|++++| .++. ++ ...++|++|+++++ .+.. +.. ...+
T Consensus 172 ~~~L~~L~L~~n~--l~~--l~~-~~~l~~L~~L~l~~N-~l~~--l~---~~~~~L~~L~l~~n-~l~~--lp~-~~~l 236 (454)
T 1jl5_A 172 PPSLEFIAAGNNQ--LEE--LPE-LQNLPFLTAIYADNN-SLKK--LP---DLPLSLESIVAGNN-ILEE--LPE-LQNL 236 (454)
T ss_dssp CTTCCEEECCSSC--CSS--CCC-CTTCTTCCEEECCSS-CCSS--CC---CCCTTCCEEECCSS-CCSS--CCC-CTTC
T ss_pred cccccEEECcCCc--CCc--Ccc-ccCCCCCCEEECCCC-cCCc--CC---CCcCcccEEECcCC-cCCc--ccc-cCCC
Confidence 3567777777652 221 111 244666777777665 2321 11 11246666666654 3321 111 2245
Q ss_pred CCCeEEEecCC
Q 023403 92 RKLKILNLCGC 102 (282)
Q Consensus 92 ~~L~~L~l~~~ 102 (282)
++|+.|+++++
T Consensus 237 ~~L~~L~l~~N 247 (454)
T 1jl5_A 237 PFLTTIYADNN 247 (454)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEECCCC
Confidence 66666666653
No 119
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.29 E-value=8.5e-10 Score=100.18 Aligned_cols=134 Identities=17% Similarity=0.071 Sum_probs=68.3
Q ss_pred CCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcC
Q 023403 91 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 170 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 170 (282)
+++++.++++.+. +..... .....++.++.|++.++.... .........+++|++|++++| .++... ...+.++
T Consensus 444 l~~l~~l~ls~n~--l~~~~~-~~~~~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N-~L~~l~-~~~f~~l 517 (635)
T 4g8a_A 444 LRNLIYLDISHTH--TRVAFN-GIFNGLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQC-QLEQLS-PTAFNSL 517 (635)
T ss_dssp CTTCCEEECTTSC--CEECCT-TTTTTCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTTC
T ss_pred ccccccccccccc--cccccc-cccccchhhhhhhhhhccccc-ccCchhhhhccccCEEECCCC-ccCCcC-hHHHcCC
Confidence 5566666666532 221111 112345677777777643211 111112235667888888874 444211 1223456
Q ss_pred CCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccC-CCcc
Q 023403 171 PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTC-SGRH 249 (282)
Q Consensus 171 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~-~~L~ 249 (282)
++|+.|++++|. ++...... ...+++|++|++++ +.++..... .+..+ ++|+
T Consensus 518 ~~L~~L~Ls~N~-l~~l~~~~------------------~~~l~~L~~L~Ls~-N~l~~~~~~-------~l~~l~~~L~ 570 (635)
T 4g8a_A 518 SSLQVLNMSHNN-FFSLDTFP------------------YKCLNSLQVLDYSL-NHIMTSKKQ-------ELQHFPSSLA 570 (635)
T ss_dssp TTCCEEECTTSC-CCBCCCGG------------------GTTCTTCCEEECTT-SCCCBCCSS-------CTTCCCTTCC
T ss_pred CCCCEEECCCCc-CCCCChhH------------------HhCCCCCCEEECCC-CcCCCCCHH-------HHHhhhCcCC
Confidence 778888887763 32110001 12237888888888 445422111 13344 4678
Q ss_pred eeeecCCC
Q 023403 250 SLVMSGCL 257 (282)
Q Consensus 250 ~L~l~~c~ 257 (282)
.|++++++
T Consensus 571 ~L~L~~Np 578 (635)
T 4g8a_A 571 FLNLTQND 578 (635)
T ss_dssp EEECTTCC
T ss_pred EEEeeCCC
Confidence 88887765
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.28 E-value=1.1e-07 Score=72.08 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=45.7
Q ss_pred cCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHH--HHHHH
Q 023403 90 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDS--VIALA 167 (282)
Q Consensus 90 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~--l~~l~ 167 (282)
.+++|+.|+++++. ++... ..+...+++|+.|+++++ .+++.........+++|+.|++++| .++... -..+.
T Consensus 62 ~l~~L~~L~Ls~N~--l~~~~-~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~ 136 (176)
T 1a9n_A 62 LLRRLKTLLVNNNR--ICRIG-EGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVI 136 (176)
T ss_dssp CCSSCCEEECCSSC--CCEEC-SCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHH
T ss_pred cCCCCCEEECCCCc--ccccC-cchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHH
Confidence 35566666666632 33211 112234677777777764 3443111112235677777777774 343211 01234
Q ss_pred hcCCCCCEEeecCCC
Q 023403 168 NGCPHLRSLGLYYCR 182 (282)
Q Consensus 168 ~~~~~L~~L~l~~~~ 182 (282)
..+++|+.|+++.+.
T Consensus 137 ~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 137 YKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCSEETTEECC
T ss_pred HHCCccceeCCCcCC
Confidence 457888888887753
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.23 E-value=6.4e-09 Score=93.38 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=56.4
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCC
Q 023403 120 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKN 199 (282)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 199 (282)
.|+.|+++++ .++. +.. ...++.|+.|++++| .++ .++..+..+++|+.|++++|. ++. +..
T Consensus 442 ~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~-------- 503 (567)
T 1dce_A 442 DVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDNA-LEN--VDG-------- 503 (567)
T ss_dssp TCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSSC-CCC--CGG--------
T ss_pred CceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCCC-CCC--Ccc--------
Confidence 5777777764 3443 112 335667777777774 554 232333456777777777753 332 111
Q ss_pred CCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCC
Q 023403 200 KPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 257 (282)
Q Consensus 200 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~ 257 (282)
+..+++|++|++++ +.++.... ...+..+++|+.|++++++
T Consensus 504 ----------l~~l~~L~~L~Ls~-N~l~~~~~------p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 504 ----------VANLPRLQELLLCN-NRLQQSAA------IQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp ----------GTTCSSCCEEECCS-SCCCSSST------TGGGGGCTTCCEEECTTSG
T ss_pred ----------cCCCCCCcEEECCC-CCCCCCCC------cHHHhcCCCCCEEEecCCc
Confidence 22337777777777 34543210 1123456677777777775
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.21 E-value=1.7e-07 Score=72.38 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=81.9
Q ss_pred hhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHH
Q 023403 37 NSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR 116 (282)
Q Consensus 37 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 116 (282)
..+++|++|++++| .++. ++.+ ..+++|++|+++++ .+.. +......+++|+.|+++++. ++.. ..+ .
T Consensus 45 ~~l~~L~~L~ls~n-~l~~--l~~~-~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N~--l~~l--~~~-~ 112 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEK--ISSL-SGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQ--IASL--SGI-E 112 (198)
T ss_dssp HHTTTCSEEECSEE-EESC--CCCH-HHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEEE--CCCH--HHH-H
T ss_pred hcCCCCCEEECCCC-CCcc--cccc-ccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCCc--CCcC--Ccc-c
Confidence 45789999999986 3443 2223 34799999999875 3331 12223335789999998843 5552 233 3
Q ss_pred hCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHH---------HHHHHhcCCCCCEEe
Q 023403 117 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDS---------VIALANGCPHLRSLG 177 (282)
Q Consensus 117 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~---------l~~l~~~~~~L~~L~ 177 (282)
.+++|+.|++.++ .+.+.........+++|++|++++| .+++.. .......+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 5788999999884 5664332233446889999999985 553321 123345689999987
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.21 E-value=7.5e-09 Score=80.68 Aligned_cols=132 Identities=16% Similarity=0.082 Sum_probs=59.4
Q ss_pred CCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhC
Q 023403 39 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 118 (282)
Q Consensus 39 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 118 (282)
.++|++|+++++ .++... ...+..+++|++|+++++ .+..... .....+++|+.|+++++. ++.... .....+
T Consensus 27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~--l~~~~~-~~~~~l 99 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLP-NGVFDELTSLTQLYLGGN-KLQSLPN-GVFNKLTSLTYLNLSTNQ--LQSLPN-GVFDKL 99 (208)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC--CCCCCT-TTTTTC
T ss_pred CCCCcEEEcCCC-ccCcCC-hhhhcccccCcEEECCCC-ccCccCh-hhcCCCCCcCEEECCCCc--CCccCH-hHhcCc
Confidence 356888888875 333211 112234677777777763 3331111 111235667777766632 332111 111235
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCC
Q 023403 119 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 181 (282)
Q Consensus 119 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 181 (282)
++|++|+++++ .+.... ......+++|++|+++++ .++.. .......+++|+.|+++++
T Consensus 100 ~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 100 TQLKELALNTN-QLQSLP-DGVFDKLTQLKDLRLYQN-QLKSV-PDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSC
T ss_pred cCCCEEEcCCC-cCcccC-HhHhccCCcCCEEECCCC-cccee-CHHHhccCCCccEEEecCC
Confidence 56666666553 233211 011223455666666553 33311 0111223455555555554
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.21 E-value=1.3e-08 Score=86.29 Aligned_cols=165 Identities=22% Similarity=0.123 Sum_probs=95.0
Q ss_pred CCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 023403 13 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 92 (282)
Q Consensus 13 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 92 (282)
+.++.|+|+++ .++.-....+...+++|++|+|++| .++..... .+..+++|++|+++++ .+...... ....++
T Consensus 39 ~~l~~L~Ls~N--~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~ 112 (361)
T 2xot_A 39 SYTALLDLSHN--NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSE-AFVPVPNLRYLDLSSN-HLHTLDEF-LFSDLQ 112 (361)
T ss_dssp TTCSEEECCSS--CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCCEECTT-TTTTCT
T ss_pred CCCCEEECCCC--CCCccChhhhhhcccccCEEECCCC-cCCccChh-hccCCCCCCEEECCCC-cCCcCCHH-HhCCCc
Confidence 46889999986 3332111112125788999999986 45432222 2235789999999884 45322111 123578
Q ss_pred CCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHH--HhcCCCCcEEEecCCCccCHHHHHHHHhcC
Q 023403 93 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNL--AYGCPDLRSLDLCGCVCITDDSVIALANGC 170 (282)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 170 (282)
+|+.|+++++. +....... +..+++|+.|+++++ .++......+ ...+++|+.|+++++ .++.-....+ ..+
T Consensus 113 ~L~~L~L~~N~--i~~~~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~-~~l 186 (361)
T 2xot_A 113 ALEVLLLYNNH--IVVVDRNA-FEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDL-QKL 186 (361)
T ss_dssp TCCEEECCSSC--CCEECTTT-TTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHH-HHS
T ss_pred CCCEEECCCCc--ccEECHHH-hCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHh-hhc
Confidence 99999998853 44322222 235788999999874 4543111111 134788999999984 5553222233 235
Q ss_pred CC--CCEEeecCCCCCcHHHH
Q 023403 171 PH--LRSLGLYYCRNITDRAI 189 (282)
Q Consensus 171 ~~--L~~L~l~~~~~l~~~~~ 189 (282)
+. ++.|++.++...-+..+
T Consensus 187 ~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 187 PAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp CHHHHTTEECCSSCEECCHHH
T ss_pred cHhhcceEEecCCCccCCcCc
Confidence 54 47889988653333333
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.18 E-value=3e-08 Score=84.05 Aligned_cols=166 Identities=18% Similarity=0.049 Sum_probs=88.3
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCC
Q 023403 40 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 119 (282)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 119 (282)
+.++.|+|+++ .++......+...+++|++|+++++ .+...... ....+++|+.|+++++. +...... .+..++
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L~Ls~N~--l~~~~~~-~~~~l~ 112 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSE-AFVPVPNLRYLDLSSNH--LHTLDEF-LFSDLQ 112 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSC--CCEECTT-TTTTCT
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChh-hccCCCCCCEEECCCCc--CCcCCHH-HhCCCc
Confidence 45888888886 4443222212114788888888874 44322111 12346788888888743 4432111 123567
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHH--HhcCCCCCEEeecCCCCCcHHHHHHHHhcCc
Q 023403 120 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL--ANGCPHLRSLGLYYCRNITDRAIYSLAQSGV 197 (282)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l--~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 197 (282)
+|+.|+++++ .+..... ..+..+++|++|+++++ .++.-....+ ...+++|+.|+++++. ++......+...
T Consensus 113 ~L~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l-- 186 (361)
T 2xot_A 113 ALEVLLLYNN-HIVVVDR-NAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKL-- 186 (361)
T ss_dssp TCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHS--
T ss_pred CCCEEECCCC-cccEECH-HHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhc--
Confidence 8888888774 4443211 12235678888888884 4443111111 0236788888888753 443222233222
Q ss_pred CCCCcchhcccccCcccC--cceEeccCCCCCCHHHHH
Q 023403 198 KNKPGIWESMKGRYDEEG--LQSLNISQCTALTPPAVQ 233 (282)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~l~~~~~~ 233 (282)
++ |+.|++.+++.--+-.+.
T Consensus 187 ----------------~~~~l~~l~l~~N~~~C~C~l~ 208 (361)
T 2xot_A 187 ----------------PAWVKNGLYLHNNPLECDCKLY 208 (361)
T ss_dssp ----------------CHHHHTTEECCSSCEECCHHHH
T ss_pred ----------------cHhhcceEEecCCCccCCcCcH
Confidence 33 477888875544444443
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.16 E-value=2.9e-08 Score=78.19 Aligned_cols=153 Identities=17% Similarity=0.097 Sum_probs=92.1
Q ss_pred ccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCC
Q 023403 15 LQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKL 94 (282)
Q Consensus 15 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 94 (282)
.+.++++++. ++. ... ...+.+++|+++++ .++.......+..+++|++|+++++ .++..... ....+++|
T Consensus 13 ~~~l~~s~n~--l~~-iP~---~~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~-~~~~l~~L 83 (220)
T 2v70_A 13 GTTVDCSNQK--LNK-IPE---HIPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEG-AFEGASGV 83 (220)
T ss_dssp TTEEECCSSC--CSS-CCS---CCCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTT-TTTTCTTC
T ss_pred CCEeEeCCCC--ccc-Ccc---CCCCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHH-HhCCCCCC
Confidence 4577777652 221 111 11346889999986 4543322222346899999999884 44322111 12357899
Q ss_pred eEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCC
Q 023403 95 KILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLR 174 (282)
Q Consensus 95 ~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~ 174 (282)
+.|+++++. ++...... +..+++|++|+++++ .+...... ....+++|++|+++++ .++... ...+..+++|+
T Consensus 84 ~~L~Ls~N~--l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~ 156 (220)
T 2v70_A 84 NEILLTSNR--LENVQHKM-FKGLESLKTLMLRSN-RITCVGND-SFIGLSSVRLLSLYDN-QITTVA-PGAFDTLHSLS 156 (220)
T ss_dssp CEEECCSSC--CCCCCGGG-GTTCSSCCEEECTTS-CCCCBCTT-SSTTCTTCSEEECTTS-CCCCBC-TTTTTTCTTCC
T ss_pred CEEECCCCc--cCccCHhH-hcCCcCCCEEECCCC-cCCeECHh-HcCCCccCCEEECCCC-cCCEEC-HHHhcCCCCCC
Confidence 999999843 44322222 245889999999885 45432111 2235789999999995 554321 22234578999
Q ss_pred EEeecCCCC
Q 023403 175 SLGLYYCRN 183 (282)
Q Consensus 175 ~L~l~~~~~ 183 (282)
.|+++++..
T Consensus 157 ~L~L~~N~l 165 (220)
T 2v70_A 157 TLNLLANPF 165 (220)
T ss_dssp EEECCSCCE
T ss_pred EEEecCcCC
Confidence 999998753
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.13 E-value=3e-08 Score=78.05 Aligned_cols=163 Identities=20% Similarity=0.092 Sum_probs=91.3
Q ss_pred ccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCC
Q 023403 42 LQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQL 121 (282)
Q Consensus 42 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L 121 (282)
-++++++++ .++. ++. ...+.+++|+++++ .++..........+++|+.|+++++. ++...... +..+++|
T Consensus 13 ~~~l~~s~n-~l~~--iP~--~~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~--i~~i~~~~-~~~l~~L 83 (220)
T 2v70_A 13 GTTVDCSNQ-KLNK--IPE--HIPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK--ITDIEEGA-FEGASGV 83 (220)
T ss_dssp TTEEECCSS-CCSS--CCS--CCCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC--CCEECTTT-TTTCTTC
T ss_pred CCEeEeCCC-Cccc--Ccc--CCCCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc--CCEECHHH-hCCCCCC
Confidence 457888875 3332 111 11356789999884 44332111122457889999998843 44322112 2357889
Q ss_pred CEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCC
Q 023403 122 QSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKP 201 (282)
Q Consensus 122 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~ 201 (282)
++|+++++ .+..... ..+..+++|++|+++++ .++... ...+..+++|+.|+++++. ++......
T Consensus 84 ~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~---------- 148 (220)
T 2v70_A 84 NEILLTSN-RLENVQH-KMFKGLESLKTLMLRSN-RITCVG-NDSFIGLSSVRLLSLYDNQ-ITTVAPGA---------- 148 (220)
T ss_dssp CEEECCSS-CCCCCCG-GGGTTCSSCCEEECTTS-CCCCBC-TTSSTTCTTCSEEECTTSC-CCCBCTTT----------
T ss_pred CEEECCCC-ccCccCH-hHhcCCcCCCEEECCCC-cCCeEC-HhHcCCCccCCEEECCCCc-CCEECHHH----------
Confidence 99999874 4443211 12346788899999884 554321 1122356888888888863 33210111
Q ss_pred cchhcccccCcccCcceEeccCCCCCCHHHHHHHH
Q 023403 202 GIWESMKGRYDEEGLQSLNISQCTALTPPAVQALC 236 (282)
Q Consensus 202 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 236 (282)
...+++|++|++++++.-.+..+.++.
T Consensus 149 --------~~~l~~L~~L~L~~N~l~c~c~l~~l~ 175 (220)
T 2v70_A 149 --------FDTLHSLSTLNLLANPFNCNCYLAWLG 175 (220)
T ss_dssp --------TTTCTTCCEEECCSCCEECSGGGHHHH
T ss_pred --------hcCCCCCCEEEecCcCCcCCCchHHHH
Confidence 223378888888886554444444443
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.10 E-value=7.8e-08 Score=74.32 Aligned_cols=129 Identities=17% Similarity=0.185 Sum_probs=86.3
Q ss_pred HccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHH
Q 023403 8 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 87 (282)
Q Consensus 8 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 87 (282)
.+..+++|+.|+++++. +.. +. ....+++|++|++++| .++. ++.....+++|++|+++++ .+... ..+
T Consensus 43 ~~~~l~~L~~L~ls~n~--l~~--l~-~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~l--~~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN--IEK--IS-SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIASL--SGI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEE--ESC--CC-CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCCH--HHH
T ss_pred HHhcCCCCCEEECCCCC--Ccc--cc-ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCcC--Ccc
Confidence 56778999999999863 332 11 2344789999999987 3442 2233344689999999985 55442 223
Q ss_pred HHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHH---------HHHHHHhcCCCCcEEE
Q 023403 88 CGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDV---------GVMNLAYGCPDLRSLD 151 (282)
Q Consensus 88 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~---------~~~~l~~~~~~L~~L~ 151 (282)
..+++|+.|+++++ .++..........+++|+.|++.++ .+.+. ........+++|+.|+
T Consensus 112 -~~l~~L~~L~l~~N--~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 -EKLVNLRVLYMSNN--KITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp -HHHHHSSEEEESEE--ECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred -ccCCCCCEEECCCC--cCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 34789999999984 4665433223346899999999985 44332 1122345789999998
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.10 E-value=4.4e-08 Score=77.10 Aligned_cols=143 Identities=17% Similarity=0.111 Sum_probs=85.1
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCC
Q 023403 66 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 145 (282)
Q Consensus 66 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 145 (282)
++|++|+++++ .+...... ....+++|+.|+++++. ++...... +..+++|+.|+++++ .++... ...+..++
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~-~~~~l~~L~~L~Ls~N~--i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPG-AFSPYKKLRRIDLSNNQ--ISELAPDA-FQGLRSLNSLVLYGN-KITELP-KSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECCSSC--CCEECTTT-TTTCSSCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred cCCCEEECCCC-cCCCcCHh-HhhCCCCCCEEECCCCc--CCCcCHHH-hhCCcCCCEEECCCC-cCCccC-HhHccCCC
Confidence 68999999884 44322111 12347889999998853 44322222 235788999999874 454211 12234578
Q ss_pred CCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCC
Q 023403 146 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT 225 (282)
Q Consensus 146 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 225 (282)
+|++|+++++ .++.... ..+..+++|+.|+++++. ++...... ...+++|++|++++++
T Consensus 105 ~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~------------------~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 105 SLQLLLLNAN-KINCLRV-DAFQDLHNLNLLSLYDNK-LQTIAKGT------------------FSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTT------------------TTTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-CCCEeCH-HHcCCCCCCCEEECCCCc-CCEECHHH------------------HhCCCCCCEEEeCCCC
Confidence 8999999984 5543211 223357889999998864 33111000 1223788999999866
Q ss_pred CCCHHHHHHHH
Q 023403 226 ALTPPAVQALC 236 (282)
Q Consensus 226 ~l~~~~~~~l~ 236 (282)
..-+..+.++.
T Consensus 164 ~~c~c~l~~l~ 174 (220)
T 2v9t_B 164 FICDCHLKWLA 174 (220)
T ss_dssp EECSGGGHHHH
T ss_pred cCCCCccHHHH
Confidence 55555555554
No 130
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.10 E-value=7e-08 Score=75.12 Aligned_cols=148 Identities=19% Similarity=0.134 Sum_probs=92.6
Q ss_pred CCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcC
Q 023403 12 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 91 (282)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 91 (282)
.+++++|+++++. ++. ........+++|++|+++++ .++... ...+..+++|++|+++++ .+..... .....+
T Consensus 27 ~~~l~~L~l~~n~--l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l 99 (208)
T 2o6s_A 27 PAQTTYLDLETNS--LKS-LPNGVFDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTN-QLQSLPN-GVFDKL 99 (208)
T ss_dssp CTTCSEEECCSSC--CCC-CCTTTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred CCCCcEEEcCCCc--cCc-CChhhhcccccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCC-cCCccCH-hHhcCc
Confidence 4689999999873 331 12223356889999999986 444221 222345899999999985 4432111 122457
Q ss_pred CCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCC
Q 023403 92 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP 171 (282)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 171 (282)
++|+.|+++++. ++.... .....+++|+.|+++++ .+++... .....+++|++|+++++ .+. ..++
T Consensus 100 ~~L~~L~L~~N~--l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~~~--------~~~~ 165 (208)
T 2o6s_A 100 TQLKELALNTNQ--LQSLPD-GVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDN-PWD--------CTCP 165 (208)
T ss_dssp TTCCEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSC-CBC--------CCTT
T ss_pred cCCCEEEcCCCc--CcccCH-hHhccCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCC-Cee--------cCCC
Confidence 899999999853 543221 12245789999999985 4543211 22345789999999996 332 1345
Q ss_pred CCCEEeecC
Q 023403 172 HLRSLGLYY 180 (282)
Q Consensus 172 ~L~~L~l~~ 180 (282)
+|+.|++..
T Consensus 166 ~l~~L~~~~ 174 (208)
T 2o6s_A 166 GIRYLSEWI 174 (208)
T ss_dssp TTHHHHHHH
T ss_pred CHHHHHHHH
Confidence 565555544
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.10 E-value=1.1e-07 Score=75.22 Aligned_cols=131 Identities=14% Similarity=0.043 Sum_probs=79.1
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCC
Q 023403 40 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 119 (282)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 119 (282)
++|++|++++| .++.... ..+..+++|++|+++++ .+..... .....+++|+.|+++++. ++.... ..+..++
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~N~--l~~l~~-~~~~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEP-GVFDSLINLKELYLGSN-QLGALPV-GVFDSLTQLTVLDLGTNQ--LTVLPS-AVFDRLV 112 (229)
T ss_dssp TTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC--CCCCCT-TTTTTCT
T ss_pred CCCCEEEcCCC-ccCccCH-HHhhCccCCcEEECCCC-CCCCcCh-hhcccCCCcCEEECCCCc--CCccCh-hHhCcch
Confidence 67888888886 3443211 22235788888888874 4432111 112347888888888843 443211 1223578
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCC
Q 023403 120 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 182 (282)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 182 (282)
+|+.|+++++ .+.. +......+++|++|+++++ .++.-. ...+..+++|+.|+++++.
T Consensus 113 ~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 113 HLKELFMCCN-KLTE--LPRGIERLTHLTHLALDQN-QLKSIP-HGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECCSS-CCCS--CCTTGGGCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECTTSC
T ss_pred hhCeEeccCC-cccc--cCcccccCCCCCEEECCCC-cCCccC-HHHHhCCCCCCEEEeeCCC
Confidence 8999999874 4542 1112246788999999984 554211 1233457899999998864
No 132
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.09 E-value=7.7e-08 Score=76.16 Aligned_cols=132 Identities=18% Similarity=0.145 Sum_probs=82.0
Q ss_pred CCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcC
Q 023403 12 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 91 (282)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 91 (282)
.++|+.|+++++. +.... ......+++|++|++++| .++... ...+..+++|++|+++++ .++.... .....+
T Consensus 39 ~~~L~~L~Ls~n~--i~~~~-~~~~~~l~~L~~L~L~~N-~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l 111 (229)
T 3e6j_A 39 PTNAQILYLHDNQ--ITKLE-PGVFDSLINLKELYLGSN-QLGALP-VGVFDSLTQLTVLDLGTN-QLTVLPS-AVFDRL 111 (229)
T ss_dssp CTTCSEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred CCCCCEEEcCCCc--cCccC-HHHhhCccCCcEEECCCC-CCCCcC-hhhcccCCCcCEEECCCC-cCCccCh-hHhCcc
Confidence 3689999999863 33211 122345789999999986 343221 122345799999999885 4432211 112357
Q ss_pred CCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCC
Q 023403 92 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 156 (282)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 156 (282)
++|+.|+++++. +.. +..-...+++|+.|++.++ .+..... .....+++|+.|++.+++
T Consensus 112 ~~L~~L~Ls~N~--l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 112 VHLKELFMCCNK--LTE--LPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCCEEECCSSC--CCS--CCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred hhhCeEeccCCc--ccc--cCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 899999998843 542 1111246789999999884 4543211 223457889999999853
No 133
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.09 E-value=4.1e-08 Score=77.25 Aligned_cols=133 Identities=16% Similarity=0.076 Sum_probs=77.5
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCC
Q 023403 40 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 119 (282)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 119 (282)
++|++|+++++ .++..... .+..+++|++|+++++ .+...... ....+++|+.|+++++. ++... ...+..++
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~-~~~~l~~L~~L~Ls~N-~i~~~~~~-~~~~l~~L~~L~Ls~N~--l~~l~-~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPG-AFSPYKKLRRIDLSNN-QISELAPD-AFQGLRSLNSLVLYGNK--ITELP-KSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECCSS-CCCEECTT-TTTTCSSCCEEECCSSC--CCCCC-TTTTTTCT
T ss_pred cCCCEEECCCC-cCCCcCHh-HhhCCCCCCEEECCCC-cCCCcCHH-HhhCCcCCCEEECCCCc--CCccC-HhHccCCC
Confidence 46888888875 44422211 2234678888888874 44322111 12346788888888743 44211 11223578
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCC
Q 023403 120 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRN 183 (282)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~ 183 (282)
+|+.|+++++ .+...... .+..+++|+.|+++++ .++... ...+..+++|+.|+++++..
T Consensus 105 ~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 105 SLQLLLLNAN-KINCLRVD-AFQDLHNLNLLSLYDN-KLQTIA-KGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCC-CCCEeCHH-HcCCCCCCCEEECCCC-cCCEEC-HHHHhCCCCCCEEEeCCCCc
Confidence 8899998874 45432111 2335688999999885 554321 12233478899999988653
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.06 E-value=1.5e-07 Score=84.43 Aligned_cols=125 Identities=22% Similarity=0.228 Sum_probs=74.5
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCC
Q 023403 40 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 119 (282)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 119 (282)
..|+.|++++| .++. ++. +..+++|++|+++++ .++ .++.....+++|+.|+++++. ++. +.. ...++
T Consensus 441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~--l~~--lp~-l~~l~ 508 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDNA--LEN--VDG-VANLP 508 (567)
T ss_dssp TTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSSC--CCC--CGG-GTTCS
T ss_pred cCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCCC--CCC--Ccc-cCCCC
Confidence 36888888886 4443 223 345788888888874 444 222233457888888888743 554 222 33577
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHH--HHHHHHhcCCCCCEEee
Q 023403 120 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDD--SVIALANGCPHLRSLGL 178 (282)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~--~l~~l~~~~~~L~~L~l 178 (282)
+|+.|+++++ .++..........+++|+.|++++| .++.. ....+...+|+|+.|++
T Consensus 509 ~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 8888888874 4543210122335778888888884 44321 12234445778887753
No 135
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.02 E-value=6.8e-07 Score=80.10 Aligned_cols=170 Identities=15% Similarity=0.090 Sum_probs=108.6
Q ss_pred CCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcC
Q 023403 12 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 91 (282)
Q Consensus 12 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 91 (282)
+++|+.|+++++. ++. .. ..+++|++|++++| .++. ++. + ..+|++|+++++ .++. +.. .+
T Consensus 79 ~~~L~~L~Ls~N~--l~~-ip----~~l~~L~~L~Ls~N-~l~~--ip~-l--~~~L~~L~Ls~N-~l~~--lp~---~l 139 (571)
T 3cvr_A 79 PPQITVLEITQNA--LIS-LP----ELPASLEYLDACDN-RLST--LPE-L--PASLKHLDVDNN-QLTM--LPE---LP 139 (571)
T ss_dssp CTTCSEEECCSSC--CSC-CC----CCCTTCCEEECCSS-CCSC--CCC-C--CTTCCEEECCSS-CCSC--CCC---CC
T ss_pred cCCCCEEECcCCC--Ccc-cc----cccCCCCEEEccCC-CCCC--cch-h--hcCCCEEECCCC-cCCC--CCC---cC
Confidence 4789999999873 331 11 34789999999997 4543 222 1 239999999985 4433 111 47
Q ss_pred CCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHH----H
Q 023403 92 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL----A 167 (282)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l----~ 167 (282)
++|+.|+++++. ++.. . ..+++|+.|++++| .++. +.. . .++|+.|++++| .++. +..+ .
T Consensus 140 ~~L~~L~Ls~N~--l~~l--p---~~l~~L~~L~Ls~N-~L~~--lp~-l--~~~L~~L~Ls~N-~L~~--lp~~~~~L~ 203 (571)
T 3cvr_A 140 ALLEYINADNNQ--LTML--P---ELPTSLEVLSVRNN-QLTF--LPE-L--PESLEALDVSTN-LLES--LPAVPVRNH 203 (571)
T ss_dssp TTCCEEECCSSC--CSCC--C---CCCTTCCEEECCSS-CCSC--CCC-C--CTTCCEEECCSS-CCSS--CCCCC----
T ss_pred ccccEEeCCCCc--cCcC--C---CcCCCcCEEECCCC-CCCC--cch-h--hCCCCEEECcCC-CCCc--hhhHHHhhh
Confidence 899999999854 5531 1 14689999999985 4543 111 1 178999999995 6652 2221 1
Q ss_pred hcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHh
Q 023403 168 NGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCD 237 (282)
Q Consensus 168 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 237 (282)
...+.|+.|++++|. ++.. ... +..+++|++|++++ +.++......+..
T Consensus 204 ~~~~~L~~L~Ls~N~-l~~l-p~~------------------l~~l~~L~~L~L~~-N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 204 HSEETEIFFRCRENR-ITHI-PEN------------------ILSLDPTCTIILED-NPLSSRIRESLSQ 252 (571)
T ss_dssp ----CCEEEECCSSC-CCCC-CGG------------------GGGSCTTEEEECCS-SSCCHHHHHHHHH
T ss_pred cccccceEEecCCCc-ceec-CHH------------------HhcCCCCCEEEeeC-CcCCCcCHHHHHH
Confidence 112233999999974 4410 001 12248999999999 6788777766653
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.99 E-value=3.5e-09 Score=89.44 Aligned_cols=206 Identities=15% Similarity=0.135 Sum_probs=108.5
Q ss_pred HccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHH
Q 023403 8 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 87 (282)
Q Consensus 8 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 87 (282)
.++.+++|++|+|+++.. ...........+++++++.+.++..+..-.. ..+..+++|++|+++++ .+...... .
T Consensus 49 ~f~~l~~L~~L~Ls~N~i--~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n-~l~~~~~~-~ 123 (350)
T 4ay9_X 49 AFSGFGDLEKIEISQNDV--LEVIEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNT-GIKHLPDV-H 123 (350)
T ss_dssp SSTTCTTCCEEEEECCTT--CCEECTTSBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEE-CCSSCCCC-T
T ss_pred HHcCCCCCCEEECcCCCC--CCccChhHhhcchhhhhhhcccCCcccccCc-hhhhhcccccccccccc-ccccCCch-h
Confidence 457889999999998732 1111112234467777654433334442211 12345799999999874 33221100 0
Q ss_pred HHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHH
Q 023403 88 CGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALA 167 (282)
Q Consensus 88 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~ 167 (282)
.....++..+++.++.. +.......+......++.|+++++ .+.... .-.....+|+++++.+++.++.-. ....
T Consensus 124 ~~~~~~l~~l~l~~~~~-i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~--~~~f~~~~L~~l~l~~~n~l~~i~-~~~f 198 (350)
T 4ay9_X 124 KIHSLQKVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKN-GIQEIH--NSAFNGTQLDELNLSDNNNLEELP-NDVF 198 (350)
T ss_dssp TCCBSSCEEEEEESCTT-CCEECTTSSTTSBSSCEEEECCSS-CCCEEC--TTSSTTEEEEEEECTTCTTCCCCC-TTTT
T ss_pred hcccchhhhhhhccccc-cccccccchhhcchhhhhhccccc-cccCCC--hhhccccchhHHhhccCCcccCCC-HHHh
Confidence 11234677788765321 221111111111246888999874 454311 111134578999998755554211 1223
Q ss_pred hcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHHhhCCCCccCCC
Q 023403 168 NGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSG 247 (282)
Q Consensus 168 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~ 247 (282)
+++++|+.|+++++. ++. +.. ..+.+|++|.+.++..+. .+|.+..+++
T Consensus 199 ~~l~~L~~LdLs~N~-l~~-----lp~----------------~~~~~L~~L~~l~~~~l~---------~lP~l~~l~~ 247 (350)
T 4ay9_X 199 HGASGPVILDISRTR-IHS-----LPS----------------YGLENLKKLRARSTYNLK---------KLPTLEKLVA 247 (350)
T ss_dssp TTEECCSEEECTTSC-CCC-----CCS----------------SSCTTCCEEECTTCTTCC---------CCCCTTTCCS
T ss_pred ccCcccchhhcCCCC-cCc-----cCh----------------hhhccchHhhhccCCCcC---------cCCCchhCcC
Confidence 457899999999974 431 100 012556666665555442 4455556666
Q ss_pred cceeeec
Q 023403 248 RHSLVMS 254 (282)
Q Consensus 248 L~~L~l~ 254 (282)
|+.+++.
T Consensus 248 L~~l~l~ 254 (350)
T 4ay9_X 248 LMEASLT 254 (350)
T ss_dssp CCEEECS
T ss_pred hhhCcCC
Confidence 7776664
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.85 E-value=1.5e-07 Score=78.60 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=61.0
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCC
Q 023403 120 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKN 199 (282)
Q Consensus 120 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 199 (282)
+++.+.+.+. +.......+...+++|++++++++ .++.-. .....+|++|+.+++..+ +....-..
T Consensus 203 ~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~-~~aF~~~~~L~~l~l~~n--i~~I~~~a-------- 268 (329)
T 3sb4_A 203 DINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKT-NATTIP-DFTFAQKKYLLKIKLPHN--LKTIGQRV-------- 268 (329)
T ss_dssp GCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTB-CCCEEC-TTTTTTCTTCCEEECCTT--CCEECTTT--------
T ss_pred ccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCC-Ccceec-HhhhhCCCCCCEEECCcc--cceehHHH--------
Confidence 4555555542 444555555556889999999883 343211 122346889999999774 32111111
Q ss_pred CCcchhcccccCcccCcc-eEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCCccchh
Q 023403 200 KPGIWESMKGRYDEEGLQ-SLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVH 263 (282)
Q Consensus 200 ~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~~~~~~ 263 (282)
...+++|+ .+++.+ .++.-.- ..+.+|++|+.|++.+.. ++.+.
T Consensus 269 ----------F~~~~~L~~~l~l~~--~l~~I~~-------~aF~~c~~L~~l~l~~n~-i~~I~ 313 (329)
T 3sb4_A 269 ----------FSNCGRLAGTLELPA--SVTAIEF-------GAFMGCDNLRYVLATGDK-ITTLG 313 (329)
T ss_dssp ----------TTTCTTCCEEEEECT--TCCEECT-------TTTTTCTTEEEEEECSSC-CCEEC
T ss_pred ----------hhCChhccEEEEEcc--cceEEch-------hhhhCCccCCEEEeCCCc-cCccc
Confidence 12237788 888876 2321100 123477888888885443 44433
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.69 E-value=1.7e-05 Score=63.79 Aligned_cols=38 Identities=32% Similarity=0.545 Sum_probs=17.8
Q ss_pred hhCCCccEEEcCCCCCCCh-HHHHHHHHcCCCCcEEeccC
Q 023403 37 NSCHDLQDLDLSKSFKLSD-RSLYALAHGCPNLTRLNISG 75 (282)
Q Consensus 37 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~ 75 (282)
..+++|++|+|++| .++. ..+...+..+++|++|++++
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC
Confidence 44555666666554 2322 12222333455555555555
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.62 E-value=3.2e-06 Score=70.52 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=48.0
Q ss_pred CCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCC
Q 023403 145 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC 224 (282)
Q Consensus 145 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (282)
..+..+.+.+ .+....+..+...|++|+.+++..+. ++...-.. ...+.+|++|++.++
T Consensus 202 ~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~a------------------F~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 202 RDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFT------------------FAQKKYLLKIKLPHN 260 (329)
T ss_dssp GGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTT------------------TTTCTTCCEEECCTT
T ss_pred cccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCC-cceecHhh------------------hhCCCCCCEEECCcc
Confidence 3456666655 35555566666678999999999853 32111111 223488999999883
Q ss_pred CCCCHHHHHHHHhhCCCCccCCCcc-eeeecC
Q 023403 225 TALTPPAVQALCDTFPALHTCSGRH-SLVMSG 255 (282)
Q Consensus 225 ~~l~~~~~~~l~~~~~~l~~~~~L~-~L~l~~ 255 (282)
+..-.- ....+|++|+ .+++..
T Consensus 261 --i~~I~~-------~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 261 --LKTIGQ-------RVFSNCGRLAGTLELPA 283 (329)
T ss_dssp --CCEECT-------TTTTTCTTCCEEEEECT
T ss_pred --cceehH-------HHhhCChhccEEEEEcc
Confidence 432111 1134777888 887754
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.53 E-value=1.4e-06 Score=66.92 Aligned_cols=128 Identities=17% Similarity=0.063 Sum_probs=76.2
Q ss_pred ccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCC
Q 023403 15 LQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKL 94 (282)
Q Consensus 15 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 94 (282)
.+.++++++. ++. ... ...++|++|+++++ .++.......+..+++|++|+++++ .++..... ....+++|
T Consensus 10 ~~~l~~s~~~--l~~-ip~---~~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L 80 (192)
T 1w8a_A 10 GTTVDCTGRG--LKE-IPR---DIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPN-AFEGASHI 80 (192)
T ss_dssp TTEEECTTSC--CSS-CCS---CCCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTT-TTTTCTTC
T ss_pred CCEEEcCCCC--cCc-Ccc---CCCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHh-HcCCcccC
Confidence 3677777652 221 111 11247999999986 4443222222346899999999884 44332111 22347899
Q ss_pred eEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCC
Q 023403 95 KILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 156 (282)
Q Consensus 95 ~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 156 (282)
+.|+++++. ++...... ...+++|++|+++++ .++.... .....+++|++|+++++.
T Consensus 81 ~~L~Ls~N~--l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 81 QELQLGENK--IKEISNKM-FLGLHQLKTLNLYDN-QISCVMP-GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CEEECCSCC--CCEECSSS-STTCTTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECTTCC
T ss_pred CEEECCCCc--CCccCHHH-hcCCCCCCEEECCCC-cCCeeCH-HHhhcCCCCCEEEeCCCC
Confidence 999998843 54322221 235789999999884 5553211 122357899999999953
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.52 E-value=1.4e-06 Score=66.92 Aligned_cols=119 Identities=18% Similarity=0.081 Sum_probs=72.2
Q ss_pred CCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCC
Q 023403 92 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP 171 (282)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 171 (282)
++++.|+++++. ++..........+++|++|+++++ .++.... ..+..+++|++|+++++ .++.... ..+.+++
T Consensus 29 ~~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~ 102 (192)
T 1w8a_A 29 LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRN-QLTGIEP-NAFEGASHIQELQLGEN-KIKEISN-KMFLGLH 102 (192)
T ss_dssp TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSS-CCCCBCT-TTTTTCTTCCEEECCSC-CCCEECS-SSSTTCT
T ss_pred CCCCEEECCCCc--CCccCCccccccCCCCCEEECCCC-CCCCcCH-hHcCCcccCCEEECCCC-cCCccCH-HHhcCCC
Confidence 489999998843 443222122346889999999885 4553211 12336788999999995 5553211 1123578
Q ss_pred CCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHH
Q 023403 172 HLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQAL 235 (282)
Q Consensus 172 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 235 (282)
+|++|+++++. ++...... ...+++|++|++++++.-.+-.+.++
T Consensus 103 ~L~~L~L~~N~-l~~~~~~~------------------~~~l~~L~~L~L~~N~l~c~c~l~~~ 147 (192)
T 1w8a_A 103 QLKTLNLYDNQ-ISCVMPGS------------------FEHLNSLTSLNLASNPFNCNCHLAWF 147 (192)
T ss_dssp TCCEEECCSSC-CCEECTTS------------------STTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred CCCEEECCCCc-CCeeCHHH------------------hhcCCCCCEEEeCCCCccCcCcchHH
Confidence 99999999864 43211001 22348899999999655544444444
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.51 E-value=5.7e-06 Score=63.50 Aligned_cols=119 Identities=19% Similarity=0.026 Sum_probs=72.2
Q ss_pred CCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcC
Q 023403 91 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 170 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 170 (282)
.++|+.|+++++. ++... .....+++|+.|+++++ .++.... ..+..+++|++|+++++ .++.-.. ..+.++
T Consensus 30 ~~~l~~L~L~~n~--i~~ip--~~~~~l~~L~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N-~l~~i~~-~~f~~l 101 (193)
T 2wfh_A 30 PRDVTELYLDGNQ--FTLVP--KELSNYKHLTLIDLSNN-RISTLSN-QSFSNMTQLLTLILSYN-RLRCIPP-RTFDGL 101 (193)
T ss_dssp CTTCCEEECCSSC--CCSCC--GGGGGCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCBCCT-TTTTTC
T ss_pred CCCCCEEECCCCc--CchhH--HHhhcccCCCEEECCCC-cCCEeCH-hHccCCCCCCEEECCCC-ccCEeCH-HHhCCC
Confidence 3589999999843 44211 23346889999999884 4553211 12336788999999995 5543211 123457
Q ss_pred CCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCCHHHHHHHH
Q 023403 171 PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALC 236 (282)
Q Consensus 171 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 236 (282)
++|+.|+++++. ++..... . ...+++|++|++++++..-+-.+.++.
T Consensus 102 ~~L~~L~L~~N~-l~~~~~~------------~------~~~l~~L~~L~L~~N~~~C~c~l~~l~ 148 (193)
T 2wfh_A 102 KSLRLLSLHGND-ISVVPEG------------A------FNDLSALSHLAIGANPLYCDCNMQWLS 148 (193)
T ss_dssp TTCCEEECCSSC-CCBCCTT------------T------TTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred CCCCEEECCCCC-CCeeChh------------h------hhcCccccEEEeCCCCeecCCcCHHHH
Confidence 899999999864 4310000 0 123388999999986655444445443
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.40 E-value=6.4e-06 Score=62.15 Aligned_cols=128 Identities=16% Similarity=0.073 Sum_probs=75.0
Q ss_pred CccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCC
Q 023403 14 KLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRK 93 (282)
Q Consensus 14 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 93 (282)
..+.+++++.. +..-. ....++|++|+++++ .++... ...+..+++|++|+++++ .++.... .....+++
T Consensus 8 ~~~~l~~~~~~--l~~~p----~~~~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~ 77 (177)
T 2o6r_A 8 SGTEIRCNSKG--LTSVP----TGIPSSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTK 77 (177)
T ss_dssp ETTEEECCSSC--CSSCC----TTCCTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTT
T ss_pred CCCEEEecCCC--CccCC----CCCCCCCcEEEeCCC-cccEeC-HHHhcCcccccEEECCCC-cceEeCh-hHccCCCc
Confidence 35667776542 22111 112368999999886 344221 122345789999999874 4432111 11235789
Q ss_pred CeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCC
Q 023403 94 LKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 156 (282)
Q Consensus 94 L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 156 (282)
|+.|+++++. ++.... .....+++|+.|+++++ .+.... ......+++|++|+++++.
T Consensus 78 L~~L~l~~N~--l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 78 LTILYLHENK--LQSLPN-GVFDKLTQLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred cCEEECCCCC--ccccCH-HHhhCCcccCEEECcCC-cceEeC-HHHhcCCcccCEEEecCCC
Confidence 9999998843 443221 12235788999999885 454211 1223457889999999963
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.40 E-value=5.8e-06 Score=63.47 Aligned_cols=126 Identities=19% Similarity=0.085 Sum_probs=79.2
Q ss_pred cEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCC
Q 023403 43 QDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQ 122 (282)
Q Consensus 43 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~ 122 (282)
+.++++++ .++.- +. ...++|++|+++++ .++... .....+++|+.|+++++. ++...... +..+++|+
T Consensus 13 ~~l~~~~~-~l~~i--p~--~~~~~l~~L~L~~n-~i~~ip--~~~~~l~~L~~L~Ls~N~--i~~i~~~~-f~~l~~L~ 81 (193)
T 2wfh_A 13 TVVRCSNK-GLKVL--PK--GIPRDVTELYLDGN-QFTLVP--KELSNYKHLTLIDLSNNR--ISTLSNQS-FSNMTQLL 81 (193)
T ss_dssp TEEECTTS-CCSSC--CS--CCCTTCCEEECCSS-CCCSCC--GGGGGCTTCCEEECCSSC--CCCCCTTT-TTTCTTCC
T ss_pred CEEEcCCC-CCCcC--CC--CCCCCCCEEECCCC-cCchhH--HHhhcccCCCEEECCCCc--CCEeCHhH-ccCCCCCC
Confidence 56777764 33311 11 12368999999984 554211 233568999999999853 55432222 23578999
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCC
Q 023403 123 SLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRN 183 (282)
Q Consensus 123 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~ 183 (282)
+|+++++ .++..... .+..+++|+.|+++++ .++.-. ...+..+++|+.|+++++..
T Consensus 82 ~L~Ls~N-~l~~i~~~-~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 82 TLILSYN-RLRCIPPR-TFDGLKSLRLLSLHGN-DISVVP-EGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EEECCSS-CCCBCCTT-TTTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECCSSCE
T ss_pred EEECCCC-ccCEeCHH-HhCCCCCCCEEECCCC-CCCeeC-hhhhhcCccccEEEeCCCCe
Confidence 9999985 45532211 2346789999999995 565211 12234578999999998753
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.29 E-value=9.1e-06 Score=61.28 Aligned_cols=112 Identities=13% Similarity=-0.027 Sum_probs=67.9
Q ss_pred CCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcC
Q 023403 91 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 170 (282)
Q Consensus 91 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 170 (282)
.++|+.|+++++. +..... .....+++|++|+++++ .++... ......+++|++|+++++ .++... ......+
T Consensus 27 ~~~l~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESNK--LQSLPH-GVFDKLTQLTKLSLSQN-QIQSLP-DGVFDKLTKLTILYLHEN-KLQSLP-NGVFDKL 99 (177)
T ss_dssp CTTCSEEECCSSC--CCCCCT-TTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTC
T ss_pred CCCCcEEEeCCCc--ccEeCH-HHhcCcccccEEECCCC-cceEeC-hhHccCCCccCEEECCCC-CccccC-HHHhhCC
Confidence 4689999999853 443211 12235788999999875 454321 112236788999999984 555211 1223457
Q ss_pred CCCCEEeecCCCCCcHHHHHHHHhcCcCCCCcchhcccccCcccCcceEeccCCCCCC
Q 023403 171 PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALT 228 (282)
Q Consensus 171 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 228 (282)
++|++|+++++. ++...... ...+++|++|++++++...
T Consensus 100 ~~L~~L~l~~N~-l~~~~~~~------------------~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 100 TQLKELALDTNQ-LKSVPDGI------------------FDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCCEEECCSSC-CSCCCTTT------------------TTTCTTCCEEECCSSCBCC
T ss_pred cccCEEECcCCc-ceEeCHHH------------------hcCCcccCEEEecCCCeec
Confidence 889999998863 43110000 1223889999999865443
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.29 E-value=1.7e-05 Score=73.31 Aligned_cols=111 Identities=16% Similarity=0.058 Sum_probs=68.0
Q ss_pred HHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHH
Q 023403 61 LAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNL 140 (282)
Q Consensus 61 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 140 (282)
.+..+++|++|+++++ .+.. +..-...+++|+.|+++++. ++ .....+ ..+++|+.|++++| .++. +...
T Consensus 219 ~~~~l~~L~~L~Ls~n-~l~~--l~~~~~~l~~L~~L~Ls~N~--l~-~lp~~~-~~l~~L~~L~Ls~N-~l~~--lp~~ 288 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNL-QIFN--ISANIFKYDFLTRLYLNGNS--LT-ELPAEI-KNLSNLRVLDLSHN-RLTS--LPAE 288 (727)
T ss_dssp ---CCCCCCEEECTTS-CCSC--CCGGGGGCCSCSCCBCTTSC--CS-CCCGGG-GGGTTCCEEECTTS-CCSS--CCSS
T ss_pred hhccCCCCcEEECCCC-CCCC--CChhhcCCCCCCEEEeeCCc--Cc-ccChhh-hCCCCCCEEeCcCC-cCCc--cChh
Confidence 3445788999999875 3321 11112357889999998853 54 111222 45788999999885 4542 2222
Q ss_pred HhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCc
Q 023403 141 AYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNIT 185 (282)
Q Consensus 141 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~ 185 (282)
+..+++|++|++++| .++ .+..-+..+++|+.|+|++|. ++
T Consensus 289 ~~~l~~L~~L~L~~N-~l~--~lp~~~~~l~~L~~L~L~~N~-l~ 329 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDN-MVT--TLPWEFGNLCNLQFLGVEGNP-LE 329 (727)
T ss_dssp GGGGTTCSEEECCSS-CCC--CCCSSTTSCTTCCCEECTTSC-CC
T ss_pred hcCCCCCCEEECCCC-CCC--ccChhhhcCCCccEEeCCCCc-cC
Confidence 345678999999885 554 222224457889999998864 54
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.21 E-value=3.8e-05 Score=70.98 Aligned_cols=13 Identities=15% Similarity=-0.072 Sum_probs=6.0
Q ss_pred CCCCccEEEccCC
Q 023403 11 KLTKLQTLVLRQD 23 (282)
Q Consensus 11 ~~~~L~~L~l~~~ 23 (282)
.+++|+.|+|+++
T Consensus 222 ~l~~L~~L~Ls~n 234 (727)
T 4b8c_D 222 DDQLWHALDLSNL 234 (727)
T ss_dssp CCCCCCEEECTTS
T ss_pred cCCCCcEEECCCC
Confidence 3444444444443
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.94 E-value=0.0006 Score=54.80 Aligned_cols=90 Identities=21% Similarity=0.280 Sum_probs=53.4
Q ss_pred hHHHHccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChH-HHHHHHHcCCCCcEEeccCCCCCCH-
Q 023403 4 LVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDR-SLYALAHGCPNLTRLNISGCTSFSD- 81 (282)
Q Consensus 4 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~- 81 (282)
.+..+..++|+|+.|+|+++...-- ..+......+++|+.|+|++| .+.+. .+..+. .+ +|++|.+.++ .+..
T Consensus 161 ~l~i~~~~l~~L~~L~Ls~N~l~~l-~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~~N-pl~~~ 235 (267)
T 3rw6_A 161 TLRIIEENIPELLSLNLSNNRLYRL-DDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLDGN-SLCDT 235 (267)
T ss_dssp HHHHHHHHCTTCCEEECTTSCCCCC-GGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECTTS-TTGGG
T ss_pred HHHHHHhhCCCCCEEECCCCCCCCC-ccchhHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEccCC-cCccc
Confidence 3444557799999999998743221 122334456899999999997 45432 222221 12 7888888774 3321
Q ss_pred -----HHHHHHHHcCCCCeEEE
Q 023403 82 -----HALAYLCGFCRKLKILN 98 (282)
Q Consensus 82 -----~~~~~~~~~~~~L~~L~ 98 (282)
.....+...+|+|+.|+
T Consensus 236 ~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 236 FRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CSSHHHHHHHHHHHCTTCCEES
T ss_pred cCcchhHHHHHHHHCcccCeEC
Confidence 22223444566666665
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.48 E-value=0.00017 Score=53.92 Aligned_cols=86 Identities=14% Similarity=-0.014 Sum_probs=51.9
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCc
Q 023403 118 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGV 197 (282)
Q Consensus 118 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 197 (282)
.++|+.|+++++ .++.... ..+..+++|++|+++++ .++.- .......+++|+.|+++++. ++......
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~~~~------ 97 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEP-GVFDRLTQLTRLDLDNN-QLTVL-PAGVFDKLTQLTQLSLNDNQ-LKSIPRGA------ 97 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTT------
T ss_pred CCCCcEEEcCCC-cCCccCh-hhhcCcccCCEEECCCC-CcCcc-ChhhccCCCCCCEEECCCCc-cCEeCHHH------
Confidence 367899999874 4543211 12335788999999984 56521 12223457889999998864 43110000
Q ss_pred CCCCcchhcccccCcccCcceEeccCCCC
Q 023403 198 KNKPGIWESMKGRYDEEGLQSLNISQCTA 226 (282)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 226 (282)
...+++|++|++++++.
T Consensus 98 ------------~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 98 ------------FDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp ------------TTTCTTCCEEECCSSCB
T ss_pred ------------hcCCCCCCEEEeCCCCC
Confidence 12338899999998543
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.40 E-value=0.0002 Score=53.72 Aligned_cols=85 Identities=13% Similarity=0.044 Sum_probs=51.6
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecCCCCCcHHHHHHHHhcCcC
Q 023403 119 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVK 198 (282)
Q Consensus 119 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 198 (282)
++|+.|+++++ .+.... ...+..+++|++|+++++ .++.-. ...+..+++|+.|+++++. ++....
T Consensus 33 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N~-l~~l~~--------- 98 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDNH-LKSIPR--------- 98 (174)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT---------
T ss_pred CCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCCc-cceeCH---------
Confidence 67999999874 454321 112336788999999984 665311 1223457889999998863 431000
Q ss_pred CCCcchhcccccCcccCcceEeccCCCC
Q 023403 199 NKPGIWESMKGRYDEEGLQSLNISQCTA 226 (282)
Q Consensus 199 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 226 (282)
.. ...+++|++|++++++.
T Consensus 99 ---~~------~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 99 ---GA------FDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp ---TT------TTTCTTCSEEECCSSCB
T ss_pred ---HH------hccccCCCEEEeCCCCc
Confidence 00 22348899999998543
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.28 E-value=0.00031 Score=52.44 Aligned_cols=103 Identities=15% Similarity=0.005 Sum_probs=60.8
Q ss_pred CccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCC
Q 023403 14 KLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRK 93 (282)
Q Consensus 14 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 93 (282)
..+.++++++. +.. ... ...++|++|+|+++ .++..... .+..+++|++|+++++ .+..... .....+++
T Consensus 10 ~~~~l~~s~n~--l~~-ip~---~~~~~l~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~~ 79 (170)
T 3g39_A 10 SGTTVDCSGKS--LAS-VPT---GIPTTTQVLYLYDN-QITKLEPG-VFDRLTQLTRLDLDNN-QLTVLPA-GVFDKLTQ 79 (170)
T ss_dssp ETTEEECTTSC--CSS-CCS---CCCTTCSEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTT
T ss_pred CCCEEEeCCCC--cCc-cCc---cCCCCCcEEEcCCC-cCCccChh-hhcCcccCCEEECCCC-CcCccCh-hhccCCCC
Confidence 45678888653 221 111 11367999999986 44432222 2235789999999884 4542211 11235789
Q ss_pred CeEEEecCCcccccHHHHHHHHHhCCCCCEEEecCC
Q 023403 94 LKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWC 129 (282)
Q Consensus 94 L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 129 (282)
|+.|+++++. +..... ..+..+++|+.|++.++
T Consensus 80 L~~L~L~~N~--l~~~~~-~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 80 LTQLSLNDNQ--LKSIPR-GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCc--cCEeCH-HHhcCCCCCCEEEeCCC
Confidence 9999998843 543221 12335788999999874
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.23 E-value=0.00032 Score=52.65 Aligned_cols=83 Identities=16% Similarity=0.062 Sum_probs=51.0
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHHHHhCC
Q 023403 40 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 119 (282)
Q Consensus 40 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 119 (282)
++|++|+++++ .++.... ..+..+++|++|+++++ .+..... .....+++|+.|+++++. +..... .....++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N~--l~~l~~-~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEP-GVFDHLVNLQQLYFNSN-KLTAIPT-GVFDKLTQLTQLDLNDNH--LKSIPR-GAFDNLK 105 (174)
T ss_dssp TTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC--CCCCCT-TTTTTCT
T ss_pred CCCcEEEeCCC-CccccCH-HHhcCCcCCCEEECCCC-CCCccCh-hHhCCcchhhEEECCCCc--cceeCH-HHhcccc
Confidence 67899999886 3442221 22335788999999884 5533111 112357889999998843 443211 1133578
Q ss_pred CCCEEEecCC
Q 023403 120 QLQSLNLGWC 129 (282)
Q Consensus 120 ~L~~L~l~~~ 129 (282)
+|+.|++.++
T Consensus 106 ~L~~L~L~~N 115 (174)
T 2r9u_A 106 SLTHIYLYNN 115 (174)
T ss_dssp TCSEEECCSS
T ss_pred CCCEEEeCCC
Confidence 8999999875
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.52 E-value=0.00019 Score=61.51 Aligned_cols=100 Identities=15% Similarity=0.174 Sum_probs=45.1
Q ss_pred CccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCCCCCHHHHHHHHHcCCC
Q 023403 14 KLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRK 93 (282)
Q Consensus 14 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 93 (282)
+|+.+.+...-..+.+..+ ..+ +|+++.+... +..-+. ..+..|++|+.+++..+ .+..-.-..+ .+.+
T Consensus 136 ~L~~i~l~~~i~~I~~~aF----~~~-~L~~i~lp~~--l~~I~~-~aF~~c~~L~~l~l~~n-~l~~I~~~aF--~~~~ 204 (401)
T 4fdw_A 136 QIAKVVLNEGLKSIGDMAF----FNS-TVQEIVFPST--LEQLKE-DIFYYCYNLKKADLSKT-KITKLPASTF--VYAG 204 (401)
T ss_dssp CCSEEECCTTCCEECTTTT----TTC-CCCEEECCTT--CCEECS-STTTTCTTCCEEECTTS-CCSEECTTTT--TTCC
T ss_pred CccEEEeCCCccEECHHhc----CCC-CceEEEeCCC--ccEehH-HHhhCcccCCeeecCCC-cceEechhhE--eecc
Confidence 6777777643222222222 222 5777777642 221111 11235777777777642 2211100011 1456
Q ss_pred CeEEEecCCcccccHHHHHHHHHhCCCCCEEEecC
Q 023403 94 LKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGW 128 (282)
Q Consensus 94 L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 128 (282)
|+.+.+......+.... +..|++|+.+.+..
T Consensus 205 L~~l~lp~~l~~I~~~a----F~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 205 IEEVLLPVTLKEIGSQA----FLKTSQLKTIEIPE 235 (401)
T ss_dssp CSEEECCTTCCEECTTT----TTTCTTCCCEECCT
T ss_pred cCEEEeCCchheehhhH----hhCCCCCCEEecCC
Confidence 66666654222222222 23466666666653
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.06 E-value=0.0012 Score=55.22 Aligned_cols=11 Identities=36% Similarity=0.295 Sum_probs=5.6
Q ss_pred CCCCeEEEecC
Q 023403 91 CRKLKILNLCG 101 (282)
Q Consensus 91 ~~~L~~L~l~~ 101 (282)
+++|+.|++++
T Consensus 79 l~~L~~L~l~~ 89 (347)
T 2ifg_A 79 TPRLSRLNLSF 89 (347)
T ss_dssp CSCCCEEECCS
T ss_pred CcCCCEEeCCC
Confidence 44555555544
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.64 E-value=0.00037 Score=59.70 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=9.4
Q ss_pred CccCCCcceeeecCC
Q 023403 242 LHTCSGRHSLVMSGC 256 (282)
Q Consensus 242 l~~~~~L~~L~l~~c 256 (282)
+.+| +|+.+.+.+.
T Consensus 342 F~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGT 355 (401)
T ss_dssp SSSS-CCCEEEECCS
T ss_pred CCCC-CCCEEEEcCC
Confidence 3466 7777777765
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=93.92 E-value=0.0036 Score=52.22 Aligned_cols=86 Identities=19% Similarity=0.067 Sum_probs=43.8
Q ss_pred HcCCCCeEEEecC-CcccccHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHH
Q 023403 89 GFCRKLKILNLCG-CVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALA 167 (282)
Q Consensus 89 ~~~~~L~~L~l~~-~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~ 167 (282)
..+.+|+.|++++ +. +....... +..+++|+.|+++++ .++.... ..+..+++|+.|+|+++ .++.-. ....
T Consensus 28 ~~~~~L~~L~l~~~n~--l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~-~~~~ 100 (347)
T 2ifg_A 28 PGAENLTELYIENQQH--LQHLELRD-LRGLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLNLSFN-ALESLS-WKTV 100 (347)
T ss_dssp CSCSCCSEEECCSCSS--CCEECGGG-SCSCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEECCSS-CCSCCC-STTT
T ss_pred CCCCCeeEEEccCCCC--CCCcChhH-hccccCCCEEECCCC-ccceeCH-HHhcCCcCCCEEeCCCC-ccceeC-HHHc
Confidence 3456788888864 32 33211111 234677777777764 4543211 12235677777777773 444210 1112
Q ss_pred hcCCCCCEEeecCCC
Q 023403 168 NGCPHLRSLGLYYCR 182 (282)
Q Consensus 168 ~~~~~L~~L~l~~~~ 182 (282)
... .|+.|++.++.
T Consensus 101 ~~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGL-SLQELVLSGNP 114 (347)
T ss_dssp CSC-CCCEEECCSSC
T ss_pred ccC-CceEEEeeCCC
Confidence 222 27777777654
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.81 E-value=0.0014 Score=55.92 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=6.9
Q ss_pred ccCCCcceeeec
Q 023403 243 HTCSGRHSLVMS 254 (282)
Q Consensus 243 ~~~~~L~~L~l~ 254 (282)
.+|++|+.+++.
T Consensus 363 ~~C~~L~~i~lp 374 (394)
T 4fs7_A 363 QGCINLKKVELP 374 (394)
T ss_dssp TTCTTCCEEEEE
T ss_pred hCCCCCCEEEEC
Confidence 355666666654
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.62 E-value=0.12 Score=43.69 Aligned_cols=123 Identities=19% Similarity=0.311 Sum_probs=64.6
Q ss_pred hhCCCccEEEcCCCC-CCChHHHHHHHHcCCCCcEEeccCC-CCCCHHHHHHHHHcCCCCeEEEecCCcccccHHHHHHH
Q 023403 37 NSCHDLQDLDLSKSF-KLSDRSLYALAHGCPNLTRLNISGC-TSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAI 114 (282)
Q Consensus 37 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 114 (282)
..|..|+.+.+.... .+... .+..|+.|+.+.+... ..+.... ...|.+|+.+.+......+.+..
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~a---- 329 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEGITQILDDA---- 329 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTT----
T ss_pred eecccccEEecccccceecCc----ccccccccccccCCCcccccCcee----ecCCCCcCEEEeCCcccEehHhH----
Confidence 457788888886531 11111 2235788888887542 1222211 13477888888865322233332
Q ss_pred HHhCCCCCEEEecCC-CCCCHHHHHHHHhcCCCCcEEEecCCCccCHHHHHHHHhcCCCCCEEeecC
Q 023403 115 GRNCNQLQSLNLGWC-EDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYY 180 (282)
Q Consensus 115 ~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~ 180 (282)
+.+|.+|+++.+... ..+.+. .+..|.+|+.+++.+. .. ....+ ..+.+|+.+.+..
T Consensus 330 F~~C~~L~~i~ip~sv~~I~~~----aF~~C~~L~~i~~~~~-~~---~~~~~-~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 330 FAGCEQLERIAIPSSVTKIPES----AFSNCTALNNIEYSGS-RS---QWNAI-STDSGLQNLPVAP 387 (394)
T ss_dssp TTTCTTCCEEEECTTCCBCCGG----GGTTCTTCCEEEESSC-HH---HHHTC-BCCCCC-------
T ss_pred hhCCCCCCEEEECcccCEEhHh----HhhCCCCCCEEEECCc-ee---ehhhh-hccCCCCEEEeCC
Confidence 246888999998643 223322 2347888999999873 21 12222 3467788877754
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=62.15 E-value=6.3 Score=32.98 Aligned_cols=102 Identities=21% Similarity=0.351 Sum_probs=59.1
Q ss_pred ccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCC-CCCChHHHHHHHHcCCCCcEEeccCC-CCCCHHHHHH
Q 023403 9 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS-FKLSDRSLYALAHGCPNLTRLNISGC-TSFSDHALAY 86 (282)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~ 86 (282)
+..+++|+.+.+...-..+.+ .....|.+|+++.|... ..+.+.. +..|.+|+++.+... ..+....
T Consensus 284 F~~c~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~sv~~I~~~a--- 352 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRITELPE----SVFAGCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSSVTKIPESA--- 352 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTTCCBCCGGG---
T ss_pred cccccccccccCCCcccccCc----eeecCCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcccCEEhHhH---
Confidence 457889999998753222332 23466899999999753 1233332 346999999999642 2343332
Q ss_pred HHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEEEecC
Q 023403 87 LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGW 128 (282)
Q Consensus 87 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 128 (282)
..+|.+|+.+++.+.. .. ... ...+..|+.+.+..
T Consensus 353 -F~~C~~L~~i~~~~~~--~~---~~~-~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 353 -FSNCTALNNIEYSGSR--SQ---WNA-ISTDSGLQNLPVAP 387 (394)
T ss_dssp -GTTCTTCCEEEESSCH--HH---HHT-CBCCCCC-------
T ss_pred -hhCCCCCCEEEECCce--ee---hhh-hhccCCCCEEEeCC
Confidence 2358999999998732 11 222 23577899988864
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=60.42 E-value=3.1 Score=28.93 Aligned_cols=37 Identities=11% Similarity=0.005 Sum_probs=24.9
Q ss_pred cCcceEeccCCCCCCHHHHHHHHhhCCCCccCCCcceeeecCCCC
Q 023403 214 EGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLN 258 (282)
Q Consensus 214 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~l~~~~~L~~L~l~~c~~ 258 (282)
++|++|+|++ +.|+...-. .+..+++|+.|++++.+.
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~~-------~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPPG-------LLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTT-SCCSSCCTT-------TGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCC-CcCCccChh-------hhhhccccCEEEecCCCe
Confidence 5799999999 556422111 134567889999998864
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=58.90 E-value=0.87 Score=38.05 Aligned_cols=127 Identities=16% Similarity=0.233 Sum_probs=73.0
Q ss_pred ccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCCC-CCCHHHHHHH
Q 023403 9 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCT-SFSDHALAYL 87 (282)
Q Consensus 9 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 87 (282)
+..+.+++.+.+...-..+.. .....|..|+++.+... ++.-+- ..+..|.+|+.+.+.... .+... .
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~----~~f~~~~~L~~i~lp~~--v~~I~~-~aF~~~~~l~~i~l~~~i~~i~~~----a 281 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGD----GAFYGMKALDEIAIPKN--VTSIGS-FLLQNCTALKTLNFYAKVKTVPYL----L 281 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECT----TTTTTCSSCCEEEECTT--CCEECT-TTTTTCTTCCEEEECCCCSEECTT----T
T ss_pred cccccccceeeeccceeEEcc----ccccCCccceEEEcCCC--ccEeCc-cccceeehhccccccccceecccc----c
Confidence 345677888887643222222 12345788999999763 221111 122358889999886421 11111 1
Q ss_pred HHcCCCCeEEEecCCc-ccccHHHHHHHHHhCCCCCEEEecCC-CCCCHHHHHHHHhcCCCCcEEEecC
Q 023403 88 CGFCRKLKILNLCGCV-KAATDYALQAIGRNCNQLQSLNLGWC-EDVGDVGVMNLAYGCPDLRSLDLCG 154 (282)
Q Consensus 88 ~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~ 154 (282)
...|.+|+.+.+.+.. ..+.+.. +.+|.+|+.+.+... ..+.+. ....|.+|+++.+..
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~a----F~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRV----FMDCVKLSSVTLPTALKTIQVY----AFKNCKALSTISYPK 342 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTT----TTTTCTTCCCCCCCT
T ss_pred cccccccccccccccccceehhhh----hcCCCCCCEEEcCccccEEHHH----HhhCCCCCCEEEECC
Confidence 2357899999987632 1233322 346899999999642 222221 234688899998865
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=52.26 E-value=5.2 Score=27.75 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=18.3
Q ss_pred CccEEEcCCCCCCChHHHHHHHHcCCCCcEEeccCC
Q 023403 41 DLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC 76 (282)
Q Consensus 41 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 76 (282)
+|++|+|++| .++.-. ..++..+++|++|+|.++
T Consensus 32 ~l~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALP-PGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTS-CCSSCC-TTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCC-cCCccC-hhhhhhccccCEEEecCC
Confidence 5777777765 333211 122334667777777664
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=36.91 E-value=12 Score=30.94 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=6.9
Q ss_pred cccCcceEeccC
Q 023403 212 DEEGLQSLNISQ 223 (282)
Q Consensus 212 ~~~~L~~L~l~~ 223 (282)
.+.+|+.+.+.+
T Consensus 284 ~c~~L~~i~l~~ 295 (379)
T 4h09_A 284 GCSNLTKVVMDN 295 (379)
T ss_dssp TCTTCCEEEECC
T ss_pred cccccccccccc
Confidence 345666666654
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=26.64 E-value=11 Score=31.58 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=58.8
Q ss_pred HccCCCCccEEEccCCCCCCcHHHHHHHHhhCCCccEEEcCCC-CCCChHHHHHHHHcCCCCcEEeccCC-CCCCHHHHH
Q 023403 8 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS-FKLSDRSLYALAHGCPNLTRLNISGC-TSFSDHALA 85 (282)
Q Consensus 8 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~ 85 (282)
.+..+.+|+.+.+...-..+.+ .....|++|+.+.|... ..+.... +..|.+|+.+.+... ..+....
T Consensus 292 ~F~~~~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp~~l~~I~~~a-- 361 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDSVKFIGE----EAFESCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFPLSLRKIGANA-- 361 (394)
T ss_dssp TTTTCTTCCEEEECTTCCEECT----TTTTTCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCCTTCCEECTTT--
T ss_pred cccccccccccccccccceech----hhhcCCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEECccccEehHHH--
Confidence 3557889999998753222232 22456889999999753 1222222 346899999999652 2222221
Q ss_pred HHHHcCCCCeEEEecCCcccccHHHHHHHHHhCCCCCEE
Q 023403 86 YLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSL 124 (282)
Q Consensus 86 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L 124 (282)
...|.+|+.+++... +.... ..+..|++|+.+
T Consensus 362 --F~~C~~L~~i~lp~~---~~~~~--~~F~~c~~L~~I 393 (394)
T 4fs7_A 362 --FQGCINLKKVELPKR---LEQYR--YDFEDTTKFKWI 393 (394)
T ss_dssp --BTTCTTCCEEEEEGG---GGGGG--GGBCTTCEEEEE
T ss_pred --hhCCCCCCEEEECCC---CEEhh--heecCCCCCcEE
Confidence 235889999999762 22111 123456666654
Done!