BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023405
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Query: 30 DLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGD-EEAKEKFQQLQKVISILGDEEKR 88
+ YEVLGV+ +AS ++IKKAY KLALR HPDKNP + EEA++KF+ + + +L D +KR
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 89 ALYDQTGC 96
+LYD+ GC
Sbjct: 70 SLYDRAGC 77
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 62/98 (63%), Gaps = 16/98 (16%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKR 88
+D YE+LGV +TA ++EI+KAY +LA++ HPD+N GD+EA+ KF+++++ +L D +KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 89 ALYDQTG----------------CVDDADLAGDVVQNL 110
A YDQ G D +D+ GDV ++
Sbjct: 63 AAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDI 100
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 53/67 (79%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKR 88
+D YE+LGV +TA ++EI+KAY +LA++ HPD+N GD+EA+ KF+++++ +L D +KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 89 ALYDQTG 95
A YDQ G
Sbjct: 63 AAYDQYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 62/98 (63%), Gaps = 16/98 (16%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKR 88
+D YE+LGV +TA ++EI+KAY +LA++ HPD+N GD+EA+ KF+++++ +L D +KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 89 ALYDQTG----------------CVDDADLAGDVVQNL 110
A YDQ G D +D+ GDV ++
Sbjct: 63 AAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDI 100
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 46/67 (68%)
Query: 30 DLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRA 89
D Y++LGV R ASQ+EIKKAYY+LA + HPD N D +AKEKF QL + +L DE KR
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 90 LYDQTGC 96
YD G
Sbjct: 68 QYDAYGS 74
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 31 LYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRAL 90
LY VLG+++ A+ +IKK+Y KLAL+ HPDKNP + EA +KF+++ +IL D KR +
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNI 78
Query: 91 YDQTGCV 97
YD+ G +
Sbjct: 79 YDKYGSL 85
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 28 DKDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEK 87
D D Y VLGV RTASQ +IKKAY KLA HPDKN D A+++F Q+ K IL +EEK
Sbjct: 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEK 74
Query: 88 RALYDQTGC 96
R YD G
Sbjct: 75 RTNYDHYGS 83
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 30 DLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGD-EEAKEKFQQLQKVISILGDEEKR 88
D YEVL V R AS + IKKAY KLAL+ HPDKNP + EEA+ +F+Q+ + +L D +KR
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 89 ALYDQTGC 96
+YD+ G
Sbjct: 70 DIYDRYGS 77
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 46/64 (71%), Gaps = 3/64 (4%)
Query: 32 YEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALY 91
Y+VLGV+ AS E+KKAY K+AL+ HPDKNP + E+F+Q+ + +L DE+KR +Y
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNP---DGAEQFKQISQAYEVLSDEKKRQIY 67
Query: 92 DQTG 95
DQ G
Sbjct: 68 DQGG 71
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Query: 32 YEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALY 91
Y+VLGV+ A+Q+E+KKAY KLAL+ HPDKNP + EKF+Q+ + +L D +KR LY
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKRELY 65
Query: 92 DQTG 95
D+ G
Sbjct: 66 DKGG 69
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 28 DKDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEK 87
D++ Y +LGV +TAS +EI++A+ KLAL+LHPDKNP + A F ++ + +L DE+
Sbjct: 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79
Query: 88 RALYDQTG 95
R YD+ G
Sbjct: 80 RKKYDKYG 87
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKR 88
++ Y +LGV +TAS +EI++A+ KLAL+LHPDKNP + A F ++ + +L DE+ R
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 89 ALYDQTG 95
YD+ G
Sbjct: 62 KKYDKYG 68
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 30 DLYEVLGVERTASQQEIKKAYYKLALRLHPDKN--PGDEEAKEKFQQLQKVISILGDEEK 87
D YE+LGV R AS +++KKAY +LAL+ HPDKN PG A E F+ + ++L + EK
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPG---ATEAFKAIGTAYAVLSNPEK 64
Query: 88 RALYDQTGC 96
R YDQ G
Sbjct: 65 RKQYDQFGS 73
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 31 LYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRAL 90
LY++LGV TA+Q +IK AYY+ HPD+N G EA E+F ++ + +LG R
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78
Query: 91 YDQTGCVDDADLAG 104
YD+ G + D DL G
Sbjct: 79 YDR-GLLSDEDLRG 91
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 31 LYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRAL 90
LY++LGV +A++QE+KK Y K AL+ HPDK GD EKF+++ + IL D +KR +
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREI 66
Query: 91 YDQTGC 96
YDQ G
Sbjct: 67 YDQYGL 72
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKN--PGDEEAKEKFQQLQKVISILGDEE 86
KD Y+ LG+ R AS +EIK+AY + ALR HPDKN PG A+EKF+++ + +L D
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG---AEEKFKEIAEAYDVLSDPR 59
Query: 87 KRALYDQTG 95
KR ++D+ G
Sbjct: 60 KREIFDRYG 68
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 32 YEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEE-AKEKFQQLQKVISILGDEEKRAL 90
YE+L V R+AS +IKKAY + AL+ HPDKNP ++E A++KF+++ + +L D+ KR +
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 91 YDQTG 95
YD+ G
Sbjct: 65 YDRYG 69
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 32 YEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALY 91
Y++LGV ++AS+++IKKA++KLA++ HPDKN +A+ KF+++ + L D +R Y
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 92 DQTG 95
D G
Sbjct: 69 DTLG 72
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKR 88
+D Y +LG + +S ++I + AL HPDK+P + +A E FQ+LQK IL +EE R
Sbjct: 20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESR 79
Query: 89 ALYDQ 93
A YD
Sbjct: 80 ARYDH 84
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGD------EEAKEKFQQLQKVISIL 82
KD Y +LG + +A+ ++K+ Y KL L HPDK D EE +KF ++ + IL
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 83 GDEEKRALYDQTGCVDDADLAGDV 106
G+EE + YD C DD G V
Sbjct: 70 GNEETKREYDLQRCEDDLRNVGPV 93
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGD------EEAKEKFQQLQKVISIL 82
KD Y +LG + +A+ ++K+ Y KL L HPDK D EE +KF ++ + IL
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75
Query: 83 GDEEKRALYD 92
G+EE + YD
Sbjct: 76 GNEETKKKYD 85
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKR 88
KD Y +LGV+ T + IK AY +LA + HPD + + +A+ KF+ L + +L DE++R
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVS-KENDAEAKFKDLAEAWEVLKDEQRR 86
Query: 89 ALYDQ 93
A YDQ
Sbjct: 87 AEYDQ 91
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPD--KNPGDEEAKEKFQQLQKVISILGDEE 86
KD Y ++GV+ T + IK AY +LA + HPD K P +A+ +F+++ + +L DE+
Sbjct: 5 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP---DAEARFKEVAEAWEVLSDEQ 61
Query: 87 KRALYDQ 93
+RA YDQ
Sbjct: 62 RRAEYDQ 68
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDK--NPGDEEA 68
KD +++LGV+ AS+ E+ KAY KLA+ LHPDK PG E+A
Sbjct: 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDA 68
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPD 60
+D Y++LGV+R A +QEI KAY KLAL+ HPD
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 29 KDLYEVLGVERTASQQEIKKAYYKLALRLHPD 60
+D Y++LGV+R A +QEI KAY KLAL+ HPD
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 31 LYEVLGVERTA---SQQEIKKAYYKLALRLHPDKNPGDEE-AKEKFQQLQKVISILGDEE 86
L EV V A + E KK +L L+ HPDKNP + + A E F+ LQ I+ L E
Sbjct: 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---E 71
Query: 87 KRALYDQTG 95
K+A DQ
Sbjct: 72 KQAFLDQNA 80
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 30 DLYEVLGVERT-ASQQEIKKAYYKLALRLHPDKNPGDEE---AKEKFQQLQKVISILGDE 85
+ Y+VL V R +Q++ KAY LA + HPD+ EE A+E+F+ + L D+
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75
Query: 86 EKRALYD 92
E + YD
Sbjct: 76 EAKTNYD 82
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
Length = 174
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 31 LYEVLGVERTA--SQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQK 77
L ++LG+ER+A + ++KAY K HPDK GDEE +K L K
Sbjct: 13 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG-GDEEKMKKMNTLYK 60
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 31 LYEVLGVERTASQQ--EIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQK 77
L ++LG+ER+A ++KAY K HPDK GDEE +K L K
Sbjct: 10 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG-GDEEKMKKMNTLYK 57
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 32 YEVLGVERTASQQEIKKAYYKLALRLHPDK---NPGDEEAKEKFQQLQKVISILGDEEKR 88
++ +G+ + +++KK Y K L +HPDK P ++ AK F +L S ++ ++
Sbjct: 52 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 111
Query: 89 ALY 91
LY
Sbjct: 112 PLY 114
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 32 YEVLGVERTASQQEIKKAYYKLALRLHPDK---NPGDEEAKEKFQQLQKVISILGDEEKR 88
++ +G + +++KK Y K L +HPDK P ++ AK F +L S ++ ++
Sbjct: 39 WKPVGXADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWSEFENQGQK 98
Query: 89 ALY 91
LY
Sbjct: 99 PLY 101
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 32 YEVLGVERTASQQEIKKAYYKLALRLHPDK---NPGDEEAKEKFQQLQKVISILGDEEKR 88
++ +G+ + +++KK Y K L +HPDK P ++ AK F +L S ++ ++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179
Query: 89 AL 90
L
Sbjct: 180 PL 181
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 19/82 (23%)
Query: 42 SQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILG----DEEKRALYDQTGCV 97
S++EI KA+ RL D DE K F+ L++V LG DEE + + +
Sbjct: 79 SREEIMKAF-----RLFDD----DETGKISFKNLKRVAKELGENMTDEELQEM------I 123
Query: 98 DDADLAGDVVQNLKEFFGAMYK 119
D+AD GD N +EFF M K
Sbjct: 124 DEADRDGDGEVNEEEFFRIMKK 145
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 7/37 (18%)
Query: 63 PGDEEAKEKFQQLQKVI-------SILGDEEKRALYD 92
P D++AK K+Q+ K++ +I GDE KR++ D
Sbjct: 112 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 7/37 (18%)
Query: 63 PGDEEAKEKFQQLQKVI-------SILGDEEKRALYD 92
P D++AK K+Q+ K++ +I GDE KR++ D
Sbjct: 105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 141
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 177 LDETIA-----AGELKATKAYQKWAKKV----SETKPPTSPL 209
++E IA +GE+K K YQ+W +V E PP PL
Sbjct: 170 IEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPL 211
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 177 LDETIA-----AGELKATKAYQKWAKKV----SETKPPTSPL 209
++E IA +GE+K K YQ+W +V E PP PL
Sbjct: 170 IEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPL 211
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 177 LDETIA-----AGELKATKAYQKWAKKV----SETKPPTSPL 209
++E IA +GE+K K YQ+W +V E PP PL
Sbjct: 170 IEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPL 211
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 177 LDETIA-----AGELKATKAYQKWAKKV----SETKPPTSPL 209
++E IA +GE+K K YQ+W +V E PP PL
Sbjct: 170 IEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPL 211
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 177 LDETIA-----AGELKATKAYQKWAKKV----SETKPPTSPL 209
++E IA +GE+K K YQ+W +V E PP PL
Sbjct: 170 IEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPL 211
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 177 LDETIA-----AGELKATKAYQKWAKKV----SETKPPTSPL 209
++E IA +GE+K K YQ+W +V E PP PL
Sbjct: 170 IEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPL 211
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 177 LDETIA-----AGELKATKAYQKWAKKV----SETKPPTSPL 209
++E IA +GE+K K YQ+W +V E PP PL
Sbjct: 170 IEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPL 211
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 177 LDETIA-----AGELKATKAYQKWAKKV----SETKPPTSPL 209
++E IA +GE+K K YQ+W +V E PP PL
Sbjct: 170 IEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPL 211
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 177 LDETIA-----AGELKATKAYQKWAKKV----SETKPPTSPL 209
++E IA +GE+K K YQ+W +V E PP PL
Sbjct: 170 IEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPL 211
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 177 LDETIA-----AGELKATKAYQKWAKKV----SETKPPTSPL 209
++E IA +GE+K K YQ+W +V E PP PL
Sbjct: 170 IEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPL 211
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 177 LDETIA-----AGELKATKAYQKWAKKV----SETKPPTSPL 209
++E IA +GE+K K YQ+W +V E PP PL
Sbjct: 170 IEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPL 211
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 177 LDETIA-----AGELKATKAYQKWAKKV----SETKPPTSPL 209
++E IA +GE+K K YQ+W +V E PP PL
Sbjct: 170 IEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPL 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,979,204
Number of Sequences: 62578
Number of extensions: 262472
Number of successful extensions: 682
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 62
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)