BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023406
         (282 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp
          Family Of Plant Myb-Related Dna Binding Motifs Of The
          Arabidopsis Response Regulators
          Length = 64

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72
          T   KPR+ WT +LH++F+ AV  L G ++A PK +L LM +  LT  ++ SHLQ
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQ 54


>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
           Trypanosoma Brucei.
 pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
           Trypanosoma Brucei.
 pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
           Trypanosoma Brucei
 pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
           Trypanosoma Brucei
 pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
           Trypanosoma Brucei
 pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
           Trypanosoma Brucei
          Length = 487

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 53  VLRLMGLKGLTLYHLKSHLQYRLGQQTRRQHGADQHKE-NNGGSSFVNFYNGSLATSMTS 111
           V+R + L G+ +Y++K  + +R G     + G+    E + G  + ++ Y G++   + S
Sbjct: 115 VIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTI---LGS 171

Query: 112 SRGDEDQGPISEALK 126
           SRG +D   + + L+
Sbjct: 172 SRGPQDPKEMVDTLE 186


>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus
           Horikoshii Ot3
 pdb|2DR1|B Chain B, Crystal Structure Of The Ph1308 Protein From Pyrococcus
           Horikoshii Ot3
          Length = 386

 Score = 28.1 bits (61), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 20  DPKPRLRWTADLHDR--FVDAVTKLGGPD 46
           +P P L   A  HD+  FVDAV+ +GG D
Sbjct: 163 NPLPELAKVAKEHDKLVFVDAVSAMGGAD 191


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.129    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,076,412
Number of Sequences: 62578
Number of extensions: 320735
Number of successful extensions: 580
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 6
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)