Query 023406
Match_columns 282
No_of_seqs 182 out of 487
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 1.5E-25 3.4E-30 162.5 6.7 49 120-168 3-51 (51)
2 PLN03162 golden-2 like transcr 99.9 7.6E-23 1.7E-27 197.2 7.4 61 17-78 230-291 (526)
3 TIGR01557 myb_SHAQKYF myb-like 99.8 4.8E-21 1E-25 140.9 6.1 55 22-76 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.3 0.00071 1.5E-08 47.0 5.4 47 24-74 1-48 (48)
5 smart00426 TEA TEA domain. 91.4 0.23 5E-06 38.6 3.3 45 26-72 5-66 (68)
6 PF14379 Myb_CC_LHEQLE: MYB-CC 91.0 0.46 1E-05 35.1 4.4 34 133-167 6-39 (51)
7 PF15235 GRIN_C: G protein-reg 72.5 2.9 6.4E-05 36.5 2.4 29 140-168 71-99 (137)
8 PF00435 Spectrin: Spectrin re 62.5 55 0.0012 23.6 7.2 56 141-201 42-97 (105)
9 PF12776 Myb_DNA-bind_3: Myb/S 60.1 11 0.00024 28.6 3.2 47 26-72 1-59 (96)
10 PF01519 DUF16: Protein of unk 52.4 32 0.0007 28.8 4.9 27 138-164 65-91 (102)
11 KOG3841 TEF-1 and related tran 49.9 15 0.00033 37.2 3.1 47 24-72 76-139 (455)
12 PF01285 TEA: TEA/ATTS domain 49.7 15 0.00032 37.1 3.0 53 20-73 45-112 (431)
13 cd00167 SANT 'SWI3, ADA2, N-Co 40.4 92 0.002 19.5 5.1 42 26-72 1-42 (45)
14 PF07384 DUF1497: Protein of u 39.9 26 0.00056 26.4 2.2 23 24-46 35-57 (59)
15 smart00717 SANT SANT SWI3, AD 33.2 1.3E+02 0.0028 19.0 5.3 43 25-72 2-44 (49)
16 PF13779 DUF4175: Domain of un 30.6 2.9E+02 0.0063 30.4 9.2 50 119-168 465-521 (820)
17 smart00501 BRIGHT BRIGHT, ARID 30.4 41 0.00089 26.1 2.2 42 30-72 33-81 (93)
18 PHA02827 hypothetical protein; 26.9 69 0.0015 28.5 3.2 41 37-77 105-149 (150)
19 TIGR02302 aProt_lowcomp conser 22.7 4.8E+02 0.01 29.1 9.1 48 119-166 496-550 (851)
20 TIGR02894 DNA_bind_RsfA transc 22.3 45 0.00097 30.0 1.1 52 17-74 41-93 (161)
21 PF12998 ING: Inhibitor of gro 22.1 3.3E+02 0.0073 20.8 5.9 7 129-135 15-21 (105)
22 cd07646 I-BAR_IMD_IRSp53 Inver 21.8 3.6E+02 0.0079 25.6 7.0 66 120-190 67-141 (232)
23 PF08127 Propeptide_C1: Peptid 20.2 57 0.0012 22.8 1.1 35 31-72 1-35 (41)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.92 E-value=1.5e-25 Score=162.52 Aligned_cols=49 Identities=73% Similarity=0.965 Sum_probs=47.6
Q ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhcc
Q 023406 120 PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS 168 (282)
Q Consensus 120 qI~EALr~QmEVQrrLhEQLEVQR~LQLRIEAQGKYLQsiLEKAqe~La 168 (282)
+|+|||++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus 3 ~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s 51 (51)
T PF14379_consen 3 QITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS 51 (51)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999875
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.87 E-value=7.6e-23 Score=197.17 Aligned_cols=61 Identities=44% Similarity=0.748 Sum_probs=57.7
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-hhhhhh
Q 023406 17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQQ 78 (282)
Q Consensus 17 ~s~~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-YRl~~~ 78 (282)
....+|+||+||+|||+|||+||++|| .++||||.||++|+|+|||++||||||| ||+.++
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk 291 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR 291 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence 345689999999999999999999999 7999999999999999999999999999 999986
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.83 E-value=4.8e-21 Score=140.89 Aligned_cols=55 Identities=65% Similarity=1.042 Sum_probs=53.3
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-hhhh
Q 023406 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLG 76 (282)
Q Consensus 22 K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-YRl~ 76 (282)
|+|++||+|+|.+|++||+.||+.+.||||.|+++|++++||..||+|||| ||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 799999999999999999999988999999999999999999999999999 9975
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.28 E-value=0.00071 Score=46.95 Aligned_cols=47 Identities=30% Similarity=0.425 Sum_probs=40.1
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-hh
Q 023406 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YR 74 (282)
Q Consensus 24 RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-YR 74 (282)
|-.||++=+..|++||.++|. + .-+.|...|+ ++-|..++++|.+ |+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 568999999999999999992 1 5899999998 8999999999988 74
No 5
>smart00426 TEA TEA domain.
Probab=91.36 E-value=0.23 Score=38.64 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCChh-HHHh---hhC-----------CCCC--CHHHHHhhhh
Q 023406 26 RWTADLHDRFVDAVTKLGGPDKATPK-SVLR---LMG-----------LKGL--TLYHLKSHLQ 72 (282)
Q Consensus 26 rWT~eLH~rFv~AV~~LGG~~kAtPK-~Il~---~M~-----------v~gL--T~~hVkSHLQ 72 (282)
.|.++|-..|++|+...- ...+-| .+.. +.| ..|. |..||.||+|
T Consensus 5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQ 66 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ 66 (68)
T ss_pred cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhe
Confidence 699999999999999876 223322 2221 111 1343 6788999998
No 6
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=91.01 E-value=0.46 Score=35.15 Aligned_cols=34 Identities=38% Similarity=0.497 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhc
Q 023406 133 QRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSL 167 (282)
Q Consensus 133 rrLhEQLEVQR~LQLRIEAQGKYLQsiLEKAqe~L 167 (282)
.-|+.|+||||+|.=.+|.| |-||.-+|...+-|
T Consensus 6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl 39 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYL 39 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence 55788999999999999988 67777666655544
No 7
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=72.52 E-value=2.9 Score=36.50 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=21.5
Q ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHhhcc
Q 023406 140 EVQERLQMRIEAQGKYLQAILQKAQKSLS 168 (282)
Q Consensus 140 EVQR~LQLRIEAQGKYLQsiLEKAqe~La 168 (282)
-||+||+++||.|++.+..--.++.++.+
T Consensus 71 AIQkHLE~qi~e~~~q~~~~~~~~~~~~s 99 (137)
T PF15235_consen 71 AIQKHLERQIEEHERQRAPQKKQARKSPS 99 (137)
T ss_pred HHHHHHHHHHHHhhhcccccccccccccc
Confidence 37899999999999988765445554443
No 8
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=62.51 E-value=55 Score=23.63 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=39.5
Q ss_pred HHHHHHHhHHHHhHHHHHHHHHHHhhcccCCCCCCCcchhHHHHhhhhhhHhhhHHhhhhh
Q 023406 141 VQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMN 201 (282)
Q Consensus 141 VQR~LQLRIEAQGKYLQsiLEKAqe~La~~~~~~~~~~leaa~aeLsel~~~vs~l~e~~~ 201 (282)
-.+.++-.|..+..-+..|.+.++.-+. .++......+..+.+|+..-..|.+.+.
T Consensus 42 ~~~~~~~ei~~~~~~l~~l~~~~~~L~~-----~~~~~~~~i~~~~~~l~~~w~~l~~~~~ 97 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESLNEQAQQLID-----SGPEDSDEIQEKLEELNQRWEALCELVE 97 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHH-----cCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555677777888888888888755 2366667778888899887666665543
No 9
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=60.09 E-value=11 Score=28.60 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHHHHh---CCC-CCCCh-----hHHHhhhCC---CCCCHHHHHhhhh
Q 023406 26 RWTADLHDRFVDAVTKL---GGP-DKATP-----KSVLRLMGL---KGLTLYHLKSHLQ 72 (282)
Q Consensus 26 rWT~eLH~rFv~AV~~L---GG~-~kAtP-----K~Il~~M~v---~gLT~~hVkSHLQ 72 (282)
+||++..+-||+.+-.. |.- ....+ ..|.+.++- -.+|..||++|+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~ 59 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWK 59 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 59999999999988543 432 12333 345555553 3468899999976
No 10
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=52.38 E-value=32 Score=28.84 Aligned_cols=27 Identities=48% Similarity=0.466 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHH
Q 023406 138 QLEVQERLQMRIEAQGKYLQAILQKAQ 164 (282)
Q Consensus 138 QLEVQR~LQLRIEAQGKYLQsiLEKAq 164 (282)
|=|.-+.||.+|.+||+-|++|++.-+
T Consensus 65 QGEqIkel~~e~k~qgktL~~I~~~L~ 91 (102)
T PF01519_consen 65 QGEQIKELQVEQKAQGKTLQLILKTLQ 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555668899999999999999987543
No 11
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=49.90 E-value=15 Score=37.21 Aligned_cols=47 Identities=28% Similarity=0.428 Sum_probs=33.3
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChhHHHh----hhC----------C---CCCCHHHHHhhhh
Q 023406 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLR----LMG----------L---KGLTLYHLKSHLQ 72 (282)
Q Consensus 24 RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~----~M~----------v---~gLT~~hVkSHLQ 72 (282)
-=+|+|+.-+.|.+|+...- ..-+-|-|+. |-| . +-=|+.+|.||.|
T Consensus 76 egvWSpdIEqsFqEALaiyp--pcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQ 139 (455)
T KOG3841|consen 76 EGVWSPDIEQSFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ 139 (455)
T ss_pred ccccChhHHHHHHHHHhhcC--CCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 34899999999999998764 3334454442 122 1 3457899999999
No 12
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=49.75 E-value=15 Score=37.14 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=27.9
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHH-hhhC----------C-CC--CCHHHHHhhhh-h
Q 023406 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVL-RLMG----------L-KG--LTLYHLKSHLQ-Y 73 (282)
Q Consensus 20 ~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il-~~M~----------v-~g--LT~~hVkSHLQ-Y 73 (282)
+++..-+|++++...|++|+...-=-.+..- .+. ++.| . -| =|+.+|.||+| .
T Consensus 45 ~~~~~~vw~~~~e~af~~al~~~~~~g~~k~-~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 45 DGDGEGVWPPDIEQAFQEALAIYPPCGRRKL-SDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp -GGGS--S-HHHHHHHHHHHHHS-SSS---H-HHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCccc-ccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 4567889999999999999987751111111 111 1111 1 23 36799999999 6
No 13
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=40.40 E-value=92 Score=19.45 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh
Q 023406 26 RWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 26 rWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 72 (282)
.||++=+..|+.++.++|- ..-+.|-+.|+ +=|..+|+.|..
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~ 42 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWR 42 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHH
Confidence 4999999999999999992 23566777764 456677776643
No 14
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=39.95 E-value=26 Score=26.44 Aligned_cols=23 Identities=22% Similarity=0.641 Sum_probs=19.8
Q ss_pred CccCCHHHHHHHHHHHHHhCCCC
Q 023406 24 RLRWTADLHDRFVDAVTKLGGPD 46 (282)
Q Consensus 24 RlrWT~eLH~rFv~AV~~LGG~~ 46 (282)
.-++..|+|..|-+-|..|||.+
T Consensus 35 ~~kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 35 QNKFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred hhHhhHHHHHHHHHHHHHhcccc
Confidence 34688999999999999999854
No 15
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=33.17 E-value=1.3e+02 Score=18.99 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=31.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh
Q 023406 25 LRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 25 lrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 72 (282)
-.||++=...|+.+|.++| . ..-+.|-+.|+ +=|...|+.+-.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g-~--~~w~~Ia~~~~--~rt~~~~~~~~~ 44 (49)
T smart00717 2 GEWTEEEDELLIELVKKYG-K--NNWEKIAKELP--GRTAEQCRERWN 44 (49)
T ss_pred CCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHcC--CCCHHHHHHHHH
Confidence 4699999999999999999 1 23456666664 667777766543
No 16
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=30.60 E-value=2.9e+02 Score=30.44 Aligned_cols=50 Identities=32% Similarity=0.424 Sum_probs=39.2
Q ss_pred cchHHHHHhhHHHHHHHHHHHH-------HHHHHHHhHHHHhHHHHHHHHHHHhhcc
Q 023406 119 GPISEALKCQAEVQQRLQEQLE-------VQERLQMRIEAQGKYLQAILQKAQKSLS 168 (282)
Q Consensus 119 ~qI~EALr~QmEVQrrLhEQLE-------VQR~LQLRIEAQGKYLQsiLEKAqe~La 168 (282)
+.++.|.+-=-..|.+|.|.|+ |+|-.|=-=+|=-+||+.+-|++++.-.
T Consensus 465 G~ls~A~~~Lr~AQe~L~eAL~~gAs~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~ 521 (820)
T PF13779_consen 465 GDLSDAERRLRAAQEALREALERGASDEEIARLMQELREAMQDYMQALAEQAQRNPQ 521 (820)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCcc
Confidence 3567777666779999999885 8888884446777999999999988765
No 17
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=30.45 E-value=41 Score=26.10 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCCCC----hhHHHhhhCCCCC---CHHHHHhhhh
Q 023406 30 DLHDRFVDAVTKLGGPDKAT----PKSVLRLMGLKGL---TLYHLKSHLQ 72 (282)
Q Consensus 30 eLH~rFv~AV~~LGG~~kAt----PK~Il~~M~v~gL---T~~hVkSHLQ 72 (282)
+|+..|. +|..+||.+..+ =+.|.+.|++|.- ...++|+|-.
T Consensus 33 dL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~ 81 (93)
T smart00501 33 DLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYE 81 (93)
T ss_pred cHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHH
Confidence 7999998 599999988644 2678899998752 1345565544
No 18
>PHA02827 hypothetical protein; Provisional
Probab=26.90 E-value=69 Score=28.52 Aligned_cols=41 Identities=37% Similarity=0.469 Sum_probs=30.8
Q ss_pred HHHHHhCCCCCCChhHH--HhhhC-C-CCCCHHHHHhhhhhhhhh
Q 023406 37 DAVTKLGGPDKATPKSV--LRLMG-L-KGLTLYHLKSHLQYRLGQ 77 (282)
Q Consensus 37 ~AV~~LGG~~kAtPK~I--l~~M~-v-~gLT~~hVkSHLQYRl~~ 77 (282)
.+++.-||-+..+|.++ +.+|. + ..=.+.||||-||-|+.+
T Consensus 105 ~vAe~Wg~~~~p~~~s~~vl~lm~~ll~d~dl~~ik~~L~~RL~~ 149 (150)
T PHA02827 105 RAAEYWGGESSPTPASAKVLELLMELLTDNDISHVKSALIIRLKR 149 (150)
T ss_pred HHHHHHCCCCCCchHHHHHHHHHHHHcChhhHHHHHHHHHHHHhc
Confidence 45667798888999876 66555 2 445589999999988864
No 19
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=22.69 E-value=4.8e+02 Score=29.09 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=36.1
Q ss_pred cchHHHHHhhHHHHHHHHHHH-------HHHHHHHHhHHHHhHHHHHHHHHHHhh
Q 023406 119 GPISEALKCQAEVQQRLQEQL-------EVQERLQMRIEAQGKYLQAILQKAQKS 166 (282)
Q Consensus 119 ~qI~EALr~QmEVQrrLhEQL-------EVQR~LQLRIEAQGKYLQsiLEKAqe~ 166 (282)
+.++.|.+-=-..|.+|.|-| ||.|-.|=-=+|=-+||+.+-|+|++.
T Consensus 496 G~ls~A~~~Lr~AQ~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~ 550 (851)
T TIGR02302 496 GDLSDAERRLRAAQDALKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNN 550 (851)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 356566554458999999866 588888844467779999999999876
No 20
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=22.25 E-value=45 Score=29.98 Aligned_cols=52 Identities=21% Similarity=0.290 Sum_probs=38.6
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-hh
Q 023406 17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YR 74 (282)
Q Consensus 17 ~s~~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-YR 74 (282)
..|+..+.+||+..+-.++.+||...- ..+-.++.. ...||+..|=+-|| |.
T Consensus 41 ~RTsAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~ 93 (161)
T TIGR02894 41 NRTAAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLK 93 (161)
T ss_pred cccHHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHH
Confidence 345567999999999999999998754 222222221 26799999999999 76
No 21
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=22.09 E-value=3.3e+02 Score=20.84 Aligned_cols=7 Identities=57% Similarity=0.776 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 023406 129 AEVQQRL 135 (282)
Q Consensus 129 mEVQrrL 135 (282)
.||||.|
T Consensus 15 ~el~r~l 21 (105)
T PF12998_consen 15 AELQRNL 21 (105)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 22
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=21.78 E-value=3.6e+02 Score=25.63 Aligned_cols=66 Identities=27% Similarity=0.407 Sum_probs=42.1
Q ss_pred chHHHHHhhHHHHHHHHHHHHH---------HHHHHHhHHHHhHHHHHHHHHHHhhcccCCCCCCCcchhHHHHhhhhhh
Q 023406 120 PISEALKCQAEVQQRLQEQLEV---------QERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFN 190 (282)
Q Consensus 120 qI~EALr~QmEVQrrLhEQLEV---------QR~LQLRIEAQGKYLQsiLEKAqe~La~~~~~~~~~~leaa~aeLsel~ 190 (282)
.|..+|.-=-+|+|.++.+||+ -..|+-++|..-|||...+.+=+...- .-..++|-+.++|-.+-
T Consensus 67 eLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky~~e~k-----~k~~sleK~qseLKKlR 141 (232)
T cd07646 67 ELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLTAALKKYQTEHR-----SKGESLEKCQAELKKLR 141 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 5677775445777777777764 457999999999999976655433322 12445555555555443
No 23
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=20.21 E-value=57 Score=22.81 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh
Q 023406 31 LHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 31 LH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 72 (282)
|-+.|++-|+...-..+|..- .++.|..+||+.|-
T Consensus 1 Lsde~I~~IN~~~~tWkAG~N-------F~~~~~~~ik~LlG 35 (41)
T PF08127_consen 1 LSDEFIDYINSKNTTWKAGRN-------FENTSIEYIKRLLG 35 (41)
T ss_dssp S-HHHHHHHHHCT-SEEE-----------SSB-HHHHHHCS-
T ss_pred CCHHHHHHHHcCCCcccCCCC-------CCCCCHHHHHHHcC
Confidence 457899999999866777653 37777777777665
Done!