Query 023406
Match_columns 282
No_of_seqs 182 out of 487
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 06:15:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.9 1.4E-28 4.7E-33 184.3 7.1 60 18-78 1-61 (64)
2 2yus_A SWI/SNF-related matrix- 89.2 1.3 4.6E-05 33.3 7.1 45 22-72 16-60 (79)
3 2hzd_A Transcriptional enhance 88.2 0.36 1.2E-05 37.6 3.3 55 20-76 2-74 (82)
4 2cu7_A KIAA1915 protein; nucle 87.5 1.5 5.1E-05 31.8 6.2 47 21-73 6-53 (72)
5 2yum_A ZZZ3 protein, zinc fing 84.0 1.9 6.5E-05 31.3 5.2 52 20-74 4-59 (75)
6 2xag_B REST corepressor 1; ami 79.3 3 0.0001 41.3 6.3 52 21-78 377-429 (482)
7 2iw5_B Protein corest, REST co 79.3 3 0.0001 37.9 5.8 52 19-76 128-180 (235)
8 1x41_A Transcriptional adaptor 75.9 2.8 9.7E-05 29.4 3.8 47 21-72 5-51 (60)
9 3sjm_A Telomeric repeat-bindin 73.4 8.8 0.0003 27.5 5.9 51 17-70 4-54 (64)
10 2ba2_A D12_ORF131, hypothetica 70.5 11 0.00036 29.7 6.1 41 121-164 34-74 (85)
11 2cqq_A RSGI RUH-037, DNAJ homo 64.6 9.1 0.00031 28.4 4.5 43 24-72 8-53 (72)
12 2yqk_A Arginine-glutamic acid 64.2 6.8 0.00023 28.0 3.6 46 18-68 3-48 (63)
13 3uun_A Dystrophin; triple heli 61.2 26 0.00091 25.6 6.6 63 137-201 40-102 (119)
14 2cqr_A RSGI RUH-043, DNAJ homo 61.2 38 0.0013 25.0 7.4 47 23-72 17-64 (73)
15 2eqr_A N-COR1, N-COR, nuclear 61.1 28 0.00097 24.4 6.4 45 19-69 7-51 (61)
16 2elk_A SPCC24B10.08C protein; 60.8 9.2 0.00031 26.6 3.7 44 24-72 9-53 (58)
17 3uul_A Utrophin; spectrin repe 60.6 31 0.0011 25.3 6.9 62 138-201 41-102 (118)
18 1ity_A TRF1; helix-turn-helix, 55.1 28 0.00094 24.7 5.6 50 20-72 6-55 (69)
19 2d9a_A B-MYB, MYB-related prot 53.5 43 0.0015 22.9 6.2 48 20-72 4-51 (60)
20 1guu_A C-MYB, MYB proto-oncoge 50.4 37 0.0013 22.5 5.3 44 24-72 3-46 (52)
21 2kes_A Synphilin-1; synphillin 46.4 19 0.00066 25.2 3.4 23 130-152 15-41 (48)
22 4eef_G F-HB80.4, designed hema 41.8 11 0.00037 28.8 1.7 58 12-72 8-66 (74)
23 2dim_A Cell division cycle 5-l 36.4 1E+02 0.0036 21.6 6.2 48 20-72 5-52 (70)
24 1gvd_A MYB proto-oncogene prot 35.1 91 0.0031 20.6 5.4 44 24-72 3-46 (52)
25 2da3_A Alpha-fetoprotein enhan 34.3 66 0.0023 22.8 4.9 61 13-76 10-71 (80)
26 2cjj_A Radialis; plant develop 29.9 83 0.0029 24.2 5.0 44 24-72 8-54 (93)
27 2crg_A Metastasis associated p 29.1 53 0.0018 23.8 3.6 51 21-78 5-55 (70)
28 3ok8_A Brain-specific angiogen 28.4 91 0.0031 27.9 5.6 41 120-160 72-121 (222)
29 1m1j_B Fibrinogen beta chain; 28.0 2.8E+02 0.0095 27.2 9.5 65 130-199 132-197 (464)
30 1wgx_A KIAA1903 protein; MYB D 27.1 87 0.003 23.4 4.5 44 26-72 10-54 (73)
31 2aje_A Telomere repeat-binding 26.5 1.3E+02 0.0044 23.8 5.7 51 19-72 8-60 (105)
32 2dmt_A Homeobox protein BARH-l 25.5 1.9E+02 0.0063 20.7 6.4 66 7-75 4-70 (80)
33 2k9n_A MYB24; R2R3 domain, DNA 24.8 1.2E+02 0.0041 23.0 5.1 44 23-72 52-95 (107)
34 3lbx_A Spectrin alpha chain, e 24.0 2.8E+02 0.0095 22.2 8.2 53 143-200 98-150 (161)
35 3f31_A Spectrin alpha chain, b 23.2 2.3E+02 0.0078 22.2 6.7 53 143-200 88-140 (149)
36 2din_A Cell division cycle 5-l 23.1 1.9E+02 0.0065 20.0 5.8 45 21-72 6-50 (66)
37 1gv2_A C-MYB, MYB proto-oncoge 22.4 1.8E+02 0.0062 21.6 5.7 44 23-72 55-98 (105)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=1.4e-28 Score=184.31 Aligned_cols=60 Identities=43% Similarity=0.783 Sum_probs=57.1
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-hhhhhh
Q 023406 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQQ 78 (282)
Q Consensus 18 s~~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-YRl~~~ 78 (282)
++++|||++||+|||++||+||++|| .++||||.||++|+|+|||++||||||| ||+...
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999 7999999999999999999999999999 999764
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=89.25 E-value=1.3 Score=33.29 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=37.3
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh
Q 023406 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 22 K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 72 (282)
..+-.||++=+.+|++||...|+ .=+.|-+.| ++=|..+++.|-+
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v--~~RT~~qcr~r~~ 60 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHV--GSRTQDECILHFL 60 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHH--SSCCHHHHHHHHT
T ss_pred ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHH
Confidence 34678999999999999999993 346777776 4789999999987
No 3
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=88.19 E-value=0.36 Score=37.56 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=35.4
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhC-----------------CCCCCHHHHHhhhh-hhhh
Q 023406 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMG-----------------LKGLTLYHLKSHLQ-YRLG 76 (282)
Q Consensus 20 ~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~-----------------v~gLT~~hVkSHLQ-YRl~ 76 (282)
+++..=+|.|+|-..|++|+...- +.. +-|-+|..-| -+-=|..+|.||+| -|-.
T Consensus 2 d~~~e~vW~~~lE~aF~eaL~~yp-~~g-~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 2 DNDAEGVWSPDIEQSFQEALSIYP-PCG-RRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp CGGGSCCSCHHHHHHHHHHHHHSC-SSS-CCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CCCcCCcCCHHHHHHHHHHHHHcC-CCC-ccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHH
Confidence 345566899999999999999876 221 2222231111 03346789999999 5543
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=87.54 E-value=1.5 Score=31.85 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=38.7
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-h
Q 023406 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-Y 73 (282)
Q Consensus 21 ~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-Y 73 (282)
.-.+-.||+|=++.|+++|..+|- .=..|-..| ||=|-.+||.|-+ |
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQY 53 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 345668999999999999999992 446666654 7899999999998 5
No 5
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.99 E-value=1.9 Score=31.31 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=38.8
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCh---hHHHhhhCCCCCCHHHHHhhhh-hh
Q 023406 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATP---KSVLRLMGLKGLTLYHLKSHLQ-YR 74 (282)
Q Consensus 20 ~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtP---K~Il~~M~v~gLT~~hVkSHLQ-YR 74 (282)
+...+=.||+|=+++|+++|..+| .+...| +.|-+.| +|=|..+++.|-+ |-
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYF 59 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 334556899999999999999999 333223 3455554 7899999999998 54
No 6
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=79.29 E-value=3 Score=41.28 Aligned_cols=52 Identities=25% Similarity=0.386 Sum_probs=43.6
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-hhhhhh
Q 023406 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLGQQ 78 (282)
Q Consensus 21 ~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-YRl~~~ 78 (282)
.+..-+||++=|..|++||.+.| -.=+.|-++++-. |..||++|-+ ||-...
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yG----kdw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYG----RDFQAISDVIGNK--SVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT----TCHHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHC----cCHHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence 35678999999999999999998 2578888887755 8999999999 876544
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=79.26 E-value=3 Score=37.94 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=43.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-hhhh
Q 023406 19 RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLG 76 (282)
Q Consensus 19 ~~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-YRl~ 76 (282)
...+..-+||+|=++.|++|+...| -.=..|-++ |++=|..+||+|-. ||-.
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYG----KDW~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYG----RDFQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHS----SCHHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHC----cCHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 3446777999999999999999999 237778777 57889999999999 8754
No 8
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=75.87 E-value=2.8 Score=29.37 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=36.4
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh
Q 023406 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 21 ~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 72 (282)
+-.|-.||+|=.++|++||..+| . ..=+.|-+.| |+=|-.+++.|-+
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~ 51 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYM 51 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHH
Confidence 34566799999999999999999 1 1235666666 6788899988876
No 9
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=73.36 E-value=8.8 Score=27.55 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=35.8
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhh
Q 023406 17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 70 (282)
Q Consensus 17 ~s~~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSH 70 (282)
+++..+.|-.||+|=-++.+++|.+.|. . .=+.|.+.++.+|=|-.+++..
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~R 54 (64)
T 3sjm_A 4 MTTNITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDR 54 (64)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHH
Confidence 4455566778999999999999999992 1 2467888777778787777744
No 10
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=70.53 E-value=11 Score=29.66 Aligned_cols=41 Identities=37% Similarity=0.438 Sum_probs=29.8
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Q 023406 121 ISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQ 164 (282)
Q Consensus 121 I~EALr~QmEVQrrLhEQLEVQR~LQLRIEAQGKYLQsiLEKAq 164 (282)
|.+.+..|-|-=+.--||+ +.||+-+.|||+-|+.||+.-+
T Consensus 34 ie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL~ 74 (85)
T 2ba2_A 34 VMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEALQ 74 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777665433333444 8899999999999999987644
No 11
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=64.63 E-value=9.1 Score=28.37 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=34.3
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChh---HHHhhhCCCCCCHHHHHhhhh
Q 023406 24 RLRWTADLHDRFVDAVTKLGGPDKATPK---SVLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 24 RlrWT~eLH~rFv~AV~~LGG~~kAtPK---~Il~~M~v~gLT~~hVkSHLQ 72 (282)
+-.||.|=+.+|..|+..+++ -||. .|-..| |=|..+|+.|-+
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~ 53 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAK 53 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHH
Confidence 347999999999999999983 3565 455665 679999999866
No 12
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.21 E-value=6.8 Score=28.02 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=32.7
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHH
Q 023406 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLK 68 (282)
Q Consensus 18 s~~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVk 68 (282)
+.+...+-.||++=|..|.+|+...| . .-..|-+.| ||.=|..+|.
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG--K--df~~I~~~~-v~~Kt~~~~v 48 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG--K--NFFRIRKEL-LPNKETGELI 48 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC--S--CHHHHHHHS-CTTSCHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC--c--cHHHHHHHH-cCCCcHHHHH
Confidence 44555667999999999999999999 2 244554421 5666777765
No 13
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=61.22 E-value=26 Score=25.57 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHhhcccCCCCCCCcchhHHHHhhhhhhHhhhHHhhhhh
Q 023406 137 EQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMN 201 (282)
Q Consensus 137 EQLEVQR~LQLRIEAQGKYLQsiLEKAqe~La~~~~~~~~~~leaa~aeLsel~~~vs~l~e~~~ 201 (282)
.||+-.+.|+--|+++..-+.+|.+.+++-+.. ....+.....-+..|.+|+..-..|...+.
T Consensus 40 ~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~--~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~ 102 (119)
T 3uun_A 40 DQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGT--GKLSEDEETEVQEQMNLLNSRWECLRVASM 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777889999999999999988873 112233334457778888877666665543
No 14
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=61.21 E-value=38 Score=25.03 Aligned_cols=47 Identities=6% Similarity=0.068 Sum_probs=36.6
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhC-CCCCCHHHHHhhhh
Q 023406 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMG-LKGLTLYHLKSHLQ 72 (282)
Q Consensus 23 ~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~-v~gLT~~hVkSHLQ 72 (282)
.+-.||++=...|+.||..+|. -+|..--++=. |||=|-.+|+.|-+
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYK 64 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHH
Confidence 3446999999999999999982 27765444332 58999999999977
No 15
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.09 E-value=28 Score=24.37 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=34.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHh
Q 023406 19 RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKS 69 (282)
Q Consensus 19 ~~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkS 69 (282)
...+..-.||++=|+.|++|+.+.| . .=..|-.+ +|+=|..+|..
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~g--k--~w~~Ia~~--l~~rt~~~~v~ 51 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHP--K--NFGLIASY--LERKSVPDCVL 51 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHST--T--CHHHHHHH--CTTSCHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhC--C--CHHHHHHH--cCCCCHHHHHH
Confidence 3446677899999999999999998 2 34566555 46888888763
No 16
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=60.75 E-value=9.2 Score=26.64 Aligned_cols=44 Identities=25% Similarity=0.328 Sum_probs=33.0
Q ss_pred CccCCHHHHHHHHHHHHHhC-CCCCCChhHHHhhhCCCCCCHHHHHhhhh
Q 023406 24 RLRWTADLHDRFVDAVTKLG-GPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 24 RlrWT~eLH~rFv~AV~~LG-G~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 72 (282)
+-.||++=..++++||.+.| + .=+.|-+.|+. +=|..+++.|-+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~----~W~~IA~~~~~-~Rt~~qcr~r~~ 53 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLG----NWADIADYVGN-ARTKEECRDHYL 53 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTT----CHHHHHHHHCS-SCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcC----CHHHHHHHHCC-CCCHHHHHHHHH
Confidence 44699999999999999999 3 23455555531 678888888766
No 17
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=60.64 E-value=31 Score=25.31 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHhhcccCCCCCCCcchhHHHHhhhhhhHhhhHHhhhhh
Q 023406 138 QLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMN 201 (282)
Q Consensus 138 QLEVQR~LQLRIEAQGKYLQsiLEKAqe~La~~~~~~~~~~leaa~aeLsel~~~vs~l~e~~~ 201 (282)
||.-.+.|+--|.++..-+.+|.+.+++-+.. ...++......+..|.+|+..-..|+..+.
T Consensus 41 ~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~--~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~ 102 (118)
T 3uul_A 41 QFATHETFMMELSAHQSSVGSVLQAGNQLMTQ--GTLSDEEEFEIQEQMTLLNARWEALRVESM 102 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566667889999999999999998873 112222334457788888887666665543
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=55.07 E-value=28 Score=24.72 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=38.2
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh
Q 023406 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 20 ~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 72 (282)
..++|-.||+|=-+..+++|..+|. -.=..|...|+..|=|-.+++.+-.
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~ 55 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWR 55 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHH
Confidence 4567889999999999999999991 1336777777644778888876654
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=53.49 E-value=43 Score=22.91 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=35.0
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh
Q 023406 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 20 ~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 72 (282)
+...|-.||+|=.++++++|.++|- ..=..|-+.| ||=|-.+++.|-.
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~ 51 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWL 51 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHH
Confidence 3456778999999999999999991 1234555554 6777787776654
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=50.41 E-value=37 Score=22.53 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=33.4
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh
Q 023406 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 24 RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 72 (282)
|-.||+|=..+++++|...|- ..=+.|-+.| ||=|-.+++.|-.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~ 46 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQ 46 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHH
Confidence 457999999999999999982 1345666664 6778888876654
No 21
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=46.39 E-value=19 Score=25.24 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=16.8
Q ss_pred HHHHHHHHH----HHHHHHHHHhHHHH
Q 023406 130 EVQQRLQEQ----LEVQERLQMRIEAQ 152 (282)
Q Consensus 130 EVQrrLhEQ----LEVQR~LQLRIEAQ 152 (282)
.+-|+|+|| +-+|.+||.-+|+|
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~ 41 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQ 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355777776 45788888888877
No 22
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=41.76 E-value=11 Score=28.83 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=35.3
Q ss_pred CCCccccCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhC-CCCCCHHHHHhhhh
Q 023406 12 ENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMG-LKGLTLYHLKSHLQ 72 (282)
Q Consensus 12 ~~~~~~s~~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~-v~gLT~~hVkSHLQ 72 (282)
|.|..++...-.--.||.+=...|..|+...+ +-||.+--++-. |||=|...|+.|-|
T Consensus 8 ~~~~~m~s~~~ss~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 8 DKGSHMASTRGSGRPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --------------CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred cccceeccCCCCCCCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 44544444333445699999999999998875 457766544433 68999999999966
No 23
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.41 E-value=1e+02 Score=21.62 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=36.2
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh
Q 023406 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 20 ~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 72 (282)
+...|=.||+|=.++++++|...|- ..=+.|-..|+ |=|-.+++.|-.
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~ 52 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWY 52 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHH
Confidence 3445668999999999999999991 13466666664 778888887766
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=35.10 E-value=91 Score=20.59 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=32.1
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh
Q 023406 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 24 RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 72 (282)
+-.||+|=.++++++|.+.|- ..=..|-+.| +|=|-.+++.|-.
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~ 46 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWH 46 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHH
Confidence 447999999999999999992 1224555554 6778788776655
No 25
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=34.30 E-value=66 Score=22.82 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=39.6
Q ss_pred CCccccCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-hhhh
Q 023406 13 NGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRLG 76 (282)
Q Consensus 13 ~~~~~s~~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-YRl~ 76 (282)
.+......+++|.++|++ +...++.+.... ...++..+.++...-|||..+|+.=.| -|..
T Consensus 10 ~~~~~~~~rr~Rt~ft~~-Ql~~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 71 (80)
T 2da3_A 10 GGEEPQRDKRLRTTITPE-QLEILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRAR 71 (80)
T ss_dssp CCCCCCCCTTCCSSCCTT-THHHHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHH-HHHHHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHh
Confidence 334455667788888886 233445555444 455666666666667899999998888 5543
No 26
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=29.87 E-value=83 Score=24.25 Aligned_cols=44 Identities=30% Similarity=0.449 Sum_probs=34.6
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChhH---HHhhhCCCCCCHHHHHhhhh
Q 023406 24 RLRWTADLHDRFVDAVTKLGGPDKATPKS---VLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 24 RlrWT~eLH~rFv~AV~~LGG~~kAtPK~---Il~~M~v~gLT~~hVkSHLQ 72 (282)
.-.||+|=...|+.|+..+| .+ +|.. |-+. |||=|..+|+.|-+
T Consensus 8 ~~~WT~eEd~~L~~al~~~~-~~--~~~rW~~IA~~--vpGRT~~q~k~ry~ 54 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYD-KD--TPDRWANVARA--VEGRTPEEVKKHYE 54 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSC-TT--CTTHHHHHHHH--STTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CC--CCchHHHHHHH--cCCCCHHHHHHHHH
Confidence 34699999999999999998 22 5643 4444 47999999999977
No 27
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=29.11 E-value=53 Score=23.84 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=34.7
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhhhhhhhh
Q 023406 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQYRLGQQ 78 (282)
Q Consensus 21 ~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQYRl~~~ 78 (282)
.+..-.||++=|..|.+|+...| -+ -..|-+.| ||.=|..+|..+ |=+.++
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~f--YY~wKk 55 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYG-KD---FNDIRQDF-LPWKSLTSIIEY--YYMWKT 55 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHTT-CSSSCHHHHHHH--HHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCCHHHHHHH--HHhhcC
Confidence 35666899999999999999999 22 45555411 566777766533 435554
No 28
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=28.37 E-value=91 Score=27.88 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=33.0
Q ss_pred chHHHHHhhHHHHHHHHHHHHH---------HHHHHHhHHHHhHHHHHHH
Q 023406 120 PISEALKCQAEVQQRLQEQLEV---------QERLQMRIEAQGKYLQAIL 160 (282)
Q Consensus 120 qI~EALr~QmEVQrrLhEQLEV---------QR~LQLRIEAQGKYLQsiL 160 (282)
.|.++|.-=-|+||+|..+||. -.+|+.+||.-.||++...
T Consensus 72 eLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~ 121 (222)
T 3ok8_A 72 ILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSC 121 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788885556799999888774 5789999999999998543
No 29
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.97 E-value=2.8e+02 Score=27.24 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH-hhcccCCCCCCCcchhHHHHhhhhhhHhhhHHhhh
Q 023406 130 EVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQ-KSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMES 199 (282)
Q Consensus 130 EVQrrLhEQLEVQR~LQLRIEAQGKYLQsiLEKAq-e~La~~~~~~~~~~leaa~aeLsel~~~vs~l~e~ 199 (282)
+-|+++.+..++-......||.|-+|++.++.... ..+.. ...-++.-+..+..|..+|..+++.
T Consensus 132 ~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~-----L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 132 KTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRV-----LRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777788889999999988776432 22221 1112344455566666666555543
No 30
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=27.08 E-value=87 Score=23.41 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCChhHHHhhh-CCCCCCHHHHHhhhh
Q 023406 26 RWTADLHDRFVDAVTKLGGPDKATPKSVLRLM-GLKGLTLYHLKSHLQ 72 (282)
Q Consensus 26 rWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M-~v~gLT~~hVkSHLQ 72 (282)
.||.+=+.+|..|+..++ +.+|-+--++- -|||=|.+.|+.|-+
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~ 54 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYM 54 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 599999999999999987 34786554433 368899988887744
No 31
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=26.48 E-value=1.3e+02 Score=23.78 Aligned_cols=51 Identities=22% Similarity=0.162 Sum_probs=38.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhC--CCCCCHHHHHhhhh
Q 023406 19 RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMG--LKGLTLYHLKSHLQ 72 (282)
Q Consensus 19 ~~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~--v~gLT~~hVkSHLQ 72 (282)
...++|-.||+|=-+..+++|.++|. -.=+.|++.+. .++=|--++|.+..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdrWr 60 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDKWK 60 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHHHH
Confidence 45678899999999999999999992 12356777553 37888888886643
No 32
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.55 E-value=1.9e+02 Score=20.69 Aligned_cols=66 Identities=17% Similarity=0.094 Sum_probs=42.7
Q ss_pred CCCCCCCCccccCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh-hhh
Q 023406 7 VSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRL 75 (282)
Q Consensus 7 ~~~~~~~~~~~s~~~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ-YRl 75 (282)
|+.+++.|.......++|..+|++=- ..++.+...- ...++..+.++...-|||..+|+.=.| -|.
T Consensus 4 ~~~~~~~~~~~~~~rr~Rt~ft~~Q~-~~Le~~F~~~--~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~ 70 (80)
T 2dmt_A 4 GSSGGEPGTKAKKGRRSRTVFTELQL-MGLEKRFEKQ--KYLSTPDRIDLAESLGLSQLQVKTWYQNRRM 70 (80)
T ss_dssp CCCCCCSCCCCCCCCCSCCCCCHHHH-HHHHHHHHHC--SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHhc--CCCCHHHHHHHHHHhCCCHHHeeeccHHHHH
Confidence 34444556666677788888998532 2334444443 455666666666677899999998888 443
No 33
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=24.75 E-value=1.2e+02 Score=22.96 Aligned_cols=44 Identities=7% Similarity=0.145 Sum_probs=35.5
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh
Q 023406 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 23 ~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 72 (282)
.+-.||+|=...++++|..+|. .=..|-+.| ||=|-.+|+.|-.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~ 95 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWM 95 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHH
Confidence 4568999999999999999992 245666665 8999999998866
No 34
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=23.96 E-value=2.8e+02 Score=22.17 Aligned_cols=53 Identities=9% Similarity=0.300 Sum_probs=38.6
Q ss_pred HHHHHhHHHHhHHHHHHHHHHHhhcccCCCCCCCcchhHHHHhhhhhhHhhhHHhhhh
Q 023406 143 ERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESM 200 (282)
Q Consensus 143 R~LQLRIEAQGKYLQsiLEKAqe~La~~~~~~~~~~leaa~aeLsel~~~vs~l~e~~ 200 (282)
+.++--|+++...++.|.+.+++-+.. ++...+..+..|.+|+..-..|.+.+
T Consensus 98 ~afe~El~a~~~~~~~l~~~g~~Li~~-----~~~~~~~I~~rl~eL~~~W~~L~~~~ 150 (161)
T 3lbx_A 98 QSLEAEVQTKSRLMSELEKTREERFTM-----GHSAHEETKAHIEELRHLWDLLLELT 150 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCT-----TCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 445556889999999999999988883 34455666788888877655555543
No 35
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=23.19 E-value=2.3e+02 Score=22.23 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=39.1
Q ss_pred HHHHHhHHHHhHHHHHHHHHHHhhcccCCCCCCCcchhHHHHhhhhhhHhhhHHhhhh
Q 023406 143 ERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESM 200 (282)
Q Consensus 143 R~LQLRIEAQGKYLQsiLEKAqe~La~~~~~~~~~~leaa~aeLsel~~~vs~l~e~~ 200 (282)
+.++--|+++...++.|.+.+++-+.. ++.+.+..+..|.+++..-..|.+.+
T Consensus 88 ~afe~El~a~~~~l~~v~~~g~~Li~~-----~~~~~~~I~~rl~~l~~~W~~L~~~~ 140 (149)
T 3f31_A 88 QAFEAEVQANSGAIVKLDETGNLMISE-----GHFASETIRTRLMELHRQWELLLEKM 140 (149)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHH-----TCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666889999999999999998884 34555666788888887655555543
No 36
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.14 E-value=1.9e+02 Score=19.97 Aligned_cols=45 Identities=9% Similarity=0.276 Sum_probs=35.2
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh
Q 023406 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 21 ~K~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 72 (282)
.-.+-.||+|=.++++++|..+|- .=..|-+++ |=|-.+++.|-+
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~ 50 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYE 50 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHH
Confidence 345667999999999999999982 345666644 588899998877
No 37
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=22.44 E-value=1.8e+02 Score=21.59 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=34.4
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHhhhh
Q 023406 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72 (282)
Q Consensus 23 ~RlrWT~eLH~rFv~AV~~LGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 72 (282)
.+-.||+|=...++++|.++|. .=..|-+. +||=|-.+|+.|-.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~--l~gRt~~~~k~rw~ 98 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN----RWAEIAKL--LPGRTDNAIKNHWN 98 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS----CHHHHHTT--CTTCCHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHHHH
Confidence 4568999999999999999993 23455554 48999999988754
Done!