BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023407
(282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93Y35|PSMD6_ARATH Probable 26S proteasome non-ATPase regulatory subunit 6
OS=Arabidopsis thaliana GN=At4g24820 PE=2 SV=1
Length = 387
Score = 466 bits (1198), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/270 (81%), Positives = 250/270 (92%)
Query: 3 SEGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMD 62
+EG+QQ HL+LA+K FLLTHPDV DIEKV LK EV +++H MA YETL+A SVL++D
Sbjct: 5 AEGSQQPHLILANKLFLLTHPDVPDIEKVQLKSEVLDFIRSHGMAPLYETLIASSVLDLD 64
Query: 63 QSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKV 122
QS+L+SMR E+ELKKLD++IADAEENLGESEVREAHLAK+L++I+I DKEKALEQLK+
Sbjct: 65 QSLLESMRAANEEELKKLDEKIADAEENLGESEVREAHLAKALYFIRISDKEKALEQLKL 124
Query: 123 TESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGL 182
TE KTVAVGQKMD+VFYTLQL FFYMDFDL+SKSIDKAK LFEEGGDWERKNRLKVYEGL
Sbjct: 125 TEGKTVAVGQKMDVVFYTLQLAFFYMDFDLVSKSIDKAKKLFEEGGDWERKNRLKVYEGL 184
Query: 183 YCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEI 242
YCMSTRNFKKAASLFLDSISTFTTYE+FPY+TFIFYTVLTSII+LDRVSLKQKVVDAPEI
Sbjct: 185 YCMSTRNFKKAASLFLDSISTFTTYEIFPYETFIFYTVLTSIITLDRVSLKQKVVDAPEI 244
Query: 243 LTVIGKIPYLSEFLNSLYDCQYKSFFSAFG 272
LTV+GKIP+LSEFLNSLY+CQYK+FFSAF
Sbjct: 245 LTVLGKIPFLSEFLNSLYECQYKAFFSAFA 274
>sp|Q8W425|PSMD6_ORYSJ 26S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa
subsp. japonica GN=RPN7 PE=2 SV=1
Length = 389
Score = 454 bits (1169), Expect = e-127, Method: Compositional matrix adjust.
Identities = 217/268 (80%), Positives = 245/268 (91%)
Query: 4 EGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQ 63
EG QQ HLVLAHK FLL+HPDV D+ KV L+ +V + VK+ DMAS YE+L A VLE D
Sbjct: 8 EGKQQPHLVLAHKLFLLSHPDVDDLAKVDLRADVLAAVKSDDMASLYESLGAGGVLETDA 67
Query: 64 SVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVT 123
++L MR +IE+E++KLD++IADAEENLGESEVREAHLAKSL++I++G+KEKALEQLKVT
Sbjct: 68 ALLAEMRGRIEEEIRKLDEKIADAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVT 127
Query: 124 ESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLY 183
E KTVAVGQKMDLVF+TLQ+GFFYMDFDLISKSIDKAK LFEEGGDWERKNRLKVYEGLY
Sbjct: 128 EGKTVAVGQKMDLVFHTLQIGFFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLY 187
Query: 184 CMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEIL 243
CM+TRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTS+ISLDRVSLK KVVDAPEIL
Sbjct: 188 CMATRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSVISLDRVSLKAKVVDAPEIL 247
Query: 244 TVIGKIPYLSEFLNSLYDCQYKSFFSAF 271
VIGK+P+LSEFLNSLY+CQYKSFF+AF
Sbjct: 248 AVIGKVPHLSEFLNSLYNCQYKSFFAAF 275
>sp|Q3T0B2|PSMD6_BOVIN 26S proteasome non-ATPase regulatory subunit 6 OS=Bos taurus
GN=PSMD6 PE=2 SV=1
Length = 389
Score = 273 bits (697), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 130/273 (47%), Positives = 195/273 (71%), Gaps = 3/273 (1%)
Query: 1 MDSEG-TQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVL 59
++ EG + L +A RFLL+ P+ + ++ E+ + V+ ++MA +YE L
Sbjct: 6 LEEEGLPKNPDLRIAQLRFLLSLPEHRG--DAAVRDELMAAVRDNNMAPYYEALCKSLEW 63
Query: 60 EMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQ 119
+MD +L+ M+ EDELK+LD+ + DAE+NLGESE+R+A +AK+ + +IGDKE AL
Sbjct: 64 QMDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTA 123
Query: 120 LKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 179
+ T KTVA+G ++D+VFY L++G FYMD DLI+++ +KAKSL EEGGDW+R+NRLKVY
Sbjct: 124 FRRTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVY 183
Query: 180 EGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA 239
+GLYC++ R+FK+AA LFLD++STFT+YEL Y TF+ YTV S+I+L+R L++KV+
Sbjct: 184 QGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKG 243
Query: 240 PEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFG 272
EIL V+ +P + ++L SLY+C+Y FF +
Sbjct: 244 AEILEVLHSLPAVRQYLFSLYECRYSVFFQSLA 276
>sp|Q99JI4|PSMD6_MOUSE 26S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus
GN=Psmd6 PE=1 SV=1
Length = 389
Score = 271 bits (694), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 130/273 (47%), Positives = 194/273 (71%), Gaps = 3/273 (1%)
Query: 1 MDSEG-TQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVL 59
++ EG + L +A RFLL+ P+ + ++ E+ + V+ ++MA +YE L
Sbjct: 6 LEEEGLPKNPDLRIAQLRFLLSLPEHRG--DAAVREELMAAVRENNMAPYYEALCKSLDW 63
Query: 60 EMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQ 119
+MD +L M+ E+ELK+LD+ + DAE+NLGESE+R+A +AK+ + QIGDKE AL
Sbjct: 64 QMDVDLLSKMKKANEEELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCQIGDKEGALTA 123
Query: 120 LKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 179
+ T KTVA+G ++D+VFY L++G FYMD DLI+++ +KAKSL EEGGDW+R+NRLKVY
Sbjct: 124 FRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVY 183
Query: 180 EGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA 239
+GLYC++ R+FK+AA LFLD++STFT+YEL Y TF+ YTV S+I+L+R L++KV+
Sbjct: 184 QGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKG 243
Query: 240 PEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFG 272
EIL V+ +P + ++L SLY+C+Y FF +
Sbjct: 244 AEILEVLHSLPAVRQYLFSLYECRYSVFFQSLA 276
>sp|Q15008|PSMD6_HUMAN 26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens
GN=PSMD6 PE=1 SV=1
Length = 389
Score = 270 bits (691), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 129/273 (47%), Positives = 195/273 (71%), Gaps = 3/273 (1%)
Query: 1 MDSEG-TQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVL 59
++ EG + L +A RFLL+ P+ + ++ E+ + V+ ++MA +YE L
Sbjct: 6 LEEEGLPKNPDLRIAQLRFLLSLPEHRG--DAAVRDELMAAVRDNNMAPYYEALCKSLDW 63
Query: 60 EMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQ 119
++D +L+ M+ EDELK+LD+ + DAE+NLGESE+R+A +AK+ + +IGDKE AL
Sbjct: 64 QIDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTA 123
Query: 120 LKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 179
+ T KTVA+G ++D+VFY L++G FYMD DLI+++ +KAKSL EEGGDW+R+NRLKVY
Sbjct: 124 FRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVY 183
Query: 180 EGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA 239
+GLYC++ R+FK+AA LFLD++STFT+YEL Y TF+ YTV S+I+L+R L++KV+
Sbjct: 184 QGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKG 243
Query: 240 PEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFG 272
EIL V+ +P + ++L SLY+C+Y FF +
Sbjct: 244 AEILEVLHSLPAVRQYLFSLYECRYSVFFQSLA 276
>sp|Q9V3G7|PSMD6_DROME 26S proteasome non-ATPase regulatory subunit 6 OS=Drosophila
melanogaster GN=Rpn7 PE=2 SV=1
Length = 389
Score = 243 bits (619), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 181/262 (69%), Gaps = 2/262 (0%)
Query: 7 QQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVL 66
+ +L LA +FLLT + + + LK ++ ++ +MA +YE + +E +D+ +L
Sbjct: 13 KNPNLELAQTKFLLTLAEYK--QDAALKAKLLEAIRTENMAPWYEHICSELGWTVDKDLL 70
Query: 67 DSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESK 126
M+ E+++LD I DAE+NLGE EVREA+L KS + +IGDK A + T K
Sbjct: 71 ARMKENNRVEVEQLDAAIEDAEKNLGEMEVREANLKKSEYLCRIGDKAAAETAFRKTYEK 130
Query: 127 TVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMS 186
TV++G ++D+VF+ ++LG FY+D DLI+++IDKAK L EEGGDW+R+NRLKVY+G+Y ++
Sbjct: 131 TVSLGHRLDIVFHLIRLGLFYLDHDLITRNIDKAKYLIEEGGDWDRRNRLKVYQGVYSVA 190
Query: 187 TRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVI 246
R+FK AA+ FLD++STFT+YEL Y TF+ YTV ++I+L R L+ KV+ EI V+
Sbjct: 191 VRDFKAAATFFLDTVSTFTSYELMDYPTFVRYTVYVAMIALPRNELRDKVIKGSEIQEVL 250
Query: 247 GKIPYLSEFLNSLYDCQYKSFF 268
+P + +FL SLY+CQY++F+
Sbjct: 251 HGLPDVKQFLFSLYNCQYENFY 272
>sp|Q55C75|PSMD6_DICDI 26S proteasome non-ATPase regulatory subunit 6 OS=Dictyostelium
discoideum GN=psmD6 PE=1 SV=1
Length = 382
Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 166/232 (71%)
Query: 41 VKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAH 100
++ H M Y+ LV + DQ ++ ++ + E ELK LD++I D+ EN GESE+REA+
Sbjct: 38 IETHKMLPLYKILVEQLKWTEDQGLVSKLKAENESELKALDNKITDSVENFGESEIREAY 97
Query: 101 LAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160
LAKS FY +IGDK+ A+E + T KTV +GQK+D+VF +++G F+MD D+++++++KA
Sbjct: 98 LAKSDFYCRIGDKDTAVEMYRQTFEKTVPLGQKLDIVFTLIRMGIFWMDHDIVTRNLEKA 157
Query: 161 KSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTV 220
+SL EEGGDW+RKNRLK YE +Y MS R FK+A+ L+L+++++FT+ E Y FI Y +
Sbjct: 158 QSLVEEGGDWDRKNRLKTYEAVYKMSIRQFKEASDLYLETVASFTSTEFIDYSRFIQYLI 217
Query: 221 LTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFG 272
TS++ LDRVSLKQKV+D+P++L+VI P L + L S Y+ Y +FF A
Sbjct: 218 FTSLLHLDRVSLKQKVIDSPDVLSVINDTPKLQDLLQSFYNGDYANFFGALA 269
>sp|Q20585|PSMD6_CAEEL 26S proteasome non-ATPase regulatory subunit 6 OS=Caenorhabditis
elegans GN=rpn-7 PE=3 SV=1
Length = 410
Score = 217 bits (552), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/264 (43%), Positives = 166/264 (62%), Gaps = 6/264 (2%)
Query: 11 LVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMR 70
L L+ RF+L HP+V K ++ +K DMA FYE + A+ + +D + L +M+
Sbjct: 29 LELSQTRFMLNHPEVDSSVKEAKLEKLQETIKEFDMAPFYELVCADFKIVVDATQLAAMK 88
Query: 71 TKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV 130
+ ++ ++ + DAE+NLGESEVR+ L K +Y QIGDK+ AL+ T KTV +
Sbjct: 89 AANQKKIDEITAEVEDAEKNLGESEVRQGLLRKFEYYCQIGDKDNALKAYTATYEKTVGM 148
Query: 131 GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNF 190
G ++D+VF +++G F++D LI+K I KAK L E+GGDWERKNRL+ YE LY MS R+F
Sbjct: 149 GYRIDVVFAMIRVGLFFLDHHLINKFITKAKELMEQGGDWERKNRLRSYEALYRMSVRDF 208
Query: 191 KKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEI---LT--- 244
AA LFL+++ TF +YEL Y+ I YTV+T+ +LDR L+ KV+ E+ LT
Sbjct: 209 AGAADLFLEAVPTFGSYELMTYENLILYTVITTTFALDRPDLRTKVIRCNEVQEQLTGGG 268
Query: 245 VIGKIPYLSEFLNSLYDCQYKSFF 268
+ G + + E+L S YDC Y FF
Sbjct: 269 LNGTLIPVREYLESYYDCHYDRFF 292
>sp|Q10335|RPN7_SCHPO Probable 26S proteasome regulatory subunit rpn7
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn7 PE=2 SV=1
Length = 409
Score = 192 bits (488), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 163/280 (58%), Gaps = 8/280 (2%)
Query: 1 MDSEGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLV----AE 56
M + + L ++ F L+ P +++ + L +FS ++ HD+A Y+ L
Sbjct: 13 MTEKARTVSDLTISQAIFELSSPFLENKSQKAL-DTLFSAIRDHDLAPLYKYLSENPKTS 71
Query: 57 SVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKA 116
+ ++ D + L+SM K E++L + D I DA+E GE E+ EA K+ +Y I D+E+
Sbjct: 72 ASIDFDSNFLNSMIKKNEEKLAEFDKAIEDAQELNGEHEILEAMKNKADYYTNICDRERG 131
Query: 117 LEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176
++ T + G K+D++F ++L + Y D ++ + ++K K L E+GGDWERKNRL
Sbjct: 132 VQLCDETFERATLTGMKIDVLFSKIRLAYVYADMRVVGQLLEKLKPLIEKGGDWERKNRL 191
Query: 177 KVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKV 236
K Y+G+Y MS RNF AA L LD +STF++ EL PY + Y V++ ISLDRV +K K+
Sbjct: 192 KAYQGIYLMSIRNFSGAADLLLDCMSTFSSTELLPYYDVVRYAVISGAISLDRVDVKTKI 251
Query: 237 VDAPEILTVIGKIPYLSEF---LNSLYDCQYKSFFSAFGE 273
VD+PE+L V+ + +S +NSLY C Y FF +
Sbjct: 252 VDSPEVLAVLPQNESMSSLEACINSLYLCDYSGFFRTLAD 291
>sp|Q06103|RPN7_YEAST 26S proteasome regulatory subunit RPN7 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN7 PE=1 SV=3
Length = 429
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 156/293 (53%), Gaps = 50/293 (17%)
Query: 13 LAHKRFLLTHPDVQDIEKVGLKGE-VFSMVKAHDMASFYETLVAESV------------- 58
++ K FLLT V IE+ E V + +K +MA +Y+ L E +
Sbjct: 26 VSEKAFLLTQSKV-SIEQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQSDLEHDEK 84
Query: 59 -------LEMDQSVLDSMRTKIEDELKKLDDRI-------------ADAEENLGESEVRE 98
++ DQ + + + K E ++K+L+++I A A NLGE
Sbjct: 85 SDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGE----- 139
Query: 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSID 158
+Y QIGDK+ A + L + SK ++ G K+D++ +LGFFY D + + ++
Sbjct: 140 -------YYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLE 192
Query: 159 KAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFY 218
S+ E+GGDWER+NR K Y G++C++ RNFK+AA L +DS++TFT+ EL Y++ Y
Sbjct: 193 AVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATY 252
Query: 219 TVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYL---SEFLNSLYDCQYKSFF 268
+T + +L+R LK KV+D+PE+L++I L S SLY Y S+F
Sbjct: 253 ASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYF 305
>sp|Q54QX3|CSN1_DICDI COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum
GN=csn1 PE=1 SV=1
Length = 458
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 26/245 (10%)
Query: 41 VKAHDMA----------SFYETLVAES--VLEMDQSVLDSMRTKIEDELKKLDDRIADAE 88
V+A++MA Y T++ +S +LE+D ++++ K +L KL+ + A+
Sbjct: 60 VEAYNMALKEVQKTPNLELYNTIINKSHGILELDPVYIENLSKKNSLQLDKLEQDLNTAK 119
Query: 89 ENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYM 148
N+ + +R A FY +IGD + AL+ T + + F ++LG
Sbjct: 120 SNMVKDSIRFAQNDLGEFYYKIGDHQNALKCFIRTRDYCTTSKHVLAMCFNIIKLGVDTQ 179
Query: 149 DFDLISKSIDKAKSLFEEGGDWER--KNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTT 206
++ I KA E+ D + +L+ GLY + +K AA F++ + F
Sbjct: 180 NYTHAPSYIAKA----EQSPDLDNVSNAKLRSVNGLYNLDGSRYKLAARKFIE--TPFEQ 233
Query: 207 YELF-----PYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYD 261
+F P D +Y L ++ + DR LK+KV+D P + +P L E +N Y+
Sbjct: 234 SNVFSDIISPQD-IAYYGGLCALATFDRNELKKKVIDDPMFKNYLELVPELRELINDFYN 292
Query: 262 CQYKS 266
+Y S
Sbjct: 293 TKYGS 297
>sp|Q6K1U0|P2C17_ORYSJ Probable protein phosphatase 2C 17 OS=Oryza sativa subsp. japonica
GN=Os02g0599150 PE=2 SV=1
Length = 735
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 4 EGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVL 59
E Q+ HLVLAH+ FLL+ PD+ D+ V L+ + VK+ MA +E+L VL
Sbjct: 655 EAKQERHLVLAHELFLLSRPDLDDLANVALRSDALDAVKSDGMAPLFESLATAGVL 710
>sp|Q9VVU5|CSN1_DROME COP9 signalosome complex subunit 1b OS=Drosophila melanogaster
GN=CSN1b PE=2 SV=1
Length = 525
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 94/222 (42%), Gaps = 6/222 (2%)
Query: 62 DQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLK 121
D + +D+ K +L+KLD + + + N + +R H + Y+ GD AL+
Sbjct: 159 DAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIRRGHDDLADHYLSCGDLTNALKCYS 218
Query: 122 VTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL--FEEG---GDWERKNRL 176
+ +++ +++ + ++ + I KA+S F EG + + RL
Sbjct: 219 RARDYCTSGKHVVNMCLNVIKVSIYLQNWAHVMSYISKAESTPDFAEGSKEANAQVHTRL 278
Query: 177 KVYEGLYCMSTRNFKKAASLFLDSISTFTTY-ELFPYDTFIFYTVLTSIISLDRVSLKQK 235
+ GL + + +K AA FL++ + E+ Y L ++ + DR LK+
Sbjct: 279 ECAAGLAELQQKKYKVAAKHFLNANFDHCDFPEMISTSNVAVYGGLCALATFDRQELKRL 338
Query: 236 VVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFGEKRSD 277
V+ + + P L + + Y+ +Y S + E R +
Sbjct: 339 VIASTSFKLFLELEPQLRDIIFKFYESKYASCLTLLDEIRDN 380
>sp|P45432|CSN1_ARATH COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1
PE=1 SV=2
Length = 441
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 13/224 (5%)
Query: 61 MDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYI---QIGDKEKAL 117
MD + +++ + E + KL++ ++ NL + +R + FY +GD K
Sbjct: 103 MDLAWCEAVDRRAEQKKVKLENELSSYRTNLIKESIRMGYNDFGDFYYACGMLGDAFKNY 162
Query: 118 EQLK--VTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175
+ + T +K + + M+ + ++++G F ++K+ ++L + +
Sbjct: 163 IRTRDYCTTTKHI-IHMCMNAILVSIEMGQFTHVTSYVNKAEQNPETL-----EPMVNAK 216
Query: 176 LKVYEGLYCMSTRNFKKAASLFLD-SISTFTTY-ELFPYDTFIFYTVLTSIISLDRVSLK 233
L+ GL + + +K AA FLD + +Y E+ Y L ++ S DR LK
Sbjct: 217 LRCASGLAHLELKKYKLAARKFLDVNPELGNSYNEVIAPQDIATYGGLCALASFDRSELK 276
Query: 234 QKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFGEKRSD 277
QKV+D + +P + E +N Y +Y S +S+
Sbjct: 277 QKVIDNINFRNFLELVPDVRELINDFYSSRYASCLEYLASLKSN 320
>sp|Q6NRT5|CSN1_XENLA COP9 signalosome complex subunit 1 OS=Xenopus laevis GN=csn1 PE=2
SV=1
Length = 487
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 101/234 (43%), Gaps = 16/234 (6%)
Query: 54 VAESVLE---MDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQI 110
V E +E +D S +++ R K +L+KLD + + + N + +R H Y+
Sbjct: 112 VPEGSMEPPALDTSWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDC 171
Query: 111 GDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS---LFEEG 167
GD AL+ + +++ +++ + ++ + + KA+S + E+
Sbjct: 172 GDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKAESTPEIAEQR 231
Query: 168 GDWERK-----NRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTY---ELFPYDTFIFYT 219
G+ + + +LK GL ++ R +K+AA FL +++F EL Y
Sbjct: 232 GERDSQTQAVLTKLKCAAGLAELAARKYKQAAKCFL--LASFDHCDFPELLSPSNVAVYG 289
Query: 220 VLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFGE 273
L ++ + DR L++ V+ + + P + + + Y+ +Y S E
Sbjct: 290 GLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDE 343
>sp|P97834|CSN1_RAT COP9 signalosome complex subunit 1 OS=Rattus norvegicus GN=Gps1
PE=1 SV=1
Length = 471
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/238 (19%), Positives = 104/238 (43%), Gaps = 16/238 (6%)
Query: 54 VAESVLE---MDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQI 110
+ ES +E +D + +++ R K +L+KLD + + + N + +R H Y+
Sbjct: 96 IPESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDC 155
Query: 111 GDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS---LFEEG 167
GD AL+ + +++ +++ + ++ + + KA+S + E+
Sbjct: 156 GDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKAESTPEIAEQR 215
Query: 168 GDWERK-----NRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTY---ELFPYDTFIFYT 219
G+ + + +LK GL ++ R +K+AA FL +++F EL Y
Sbjct: 216 GERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFL--LASFDHCDFPELLSPSNVAVYG 273
Query: 220 VLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFGEKRSD 277
L ++ + DR L++ V+ + + P + + + Y+ +Y S E + +
Sbjct: 274 GLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDN 331
>sp|Q99LD4|CSN1_MOUSE COP9 signalosome complex subunit 1 OS=Mus musculus GN=Gps1 PE=1
SV=1
Length = 471
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/238 (19%), Positives = 104/238 (43%), Gaps = 16/238 (6%)
Query: 54 VAESVLE---MDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQI 110
+ ES +E +D + +++ R K +L+KLD + + + N + +R H Y+
Sbjct: 96 IPESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDC 155
Query: 111 GDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS---LFEEG 167
GD AL+ + +++ +++ + ++ + + KA+S + E+
Sbjct: 156 GDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKAESTPEIAEQR 215
Query: 168 GDWERK-----NRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTY---ELFPYDTFIFYT 219
G+ + + +LK GL ++ R +K+AA FL +++F EL Y
Sbjct: 216 GERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFL--LASFDHCDFPELLSPSNVAVYG 273
Query: 220 VLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFGEKRSD 277
L ++ + DR L++ V+ + + P + + + Y+ +Y S E + +
Sbjct: 274 GLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDN 331
>sp|Q13098|CSN1_HUMAN COP9 signalosome complex subunit 1 OS=Homo sapiens GN=GPS1 PE=1
SV=4
Length = 491
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/236 (19%), Positives = 101/236 (42%), Gaps = 12/236 (5%)
Query: 54 VAESVLE---MDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQI 110
+ ES +E +D + +++ R K +L+KLD + + + N + +R H Y+
Sbjct: 116 IPESGVEPPALDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDC 175
Query: 111 GDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS---LFEEG 167
GD AL+ + +++ +++ + ++ + + KA+S + E+
Sbjct: 176 GDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKAESTPEIAEQR 235
Query: 168 GDWERK-----NRLKVYEGLYCMSTRNFKKAA-SLFLDSISTFTTYELFPYDTFIFYTVL 221
G+ + + +LK GL ++ R +K+AA L L S EL Y L
Sbjct: 236 GERDSQTQAILTKLKCAAGLAELAARKYKQAAKCLLLASFDHCDFPELLSPSNVAIYGGL 295
Query: 222 TSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFGEKRSD 277
++ + DR L++ V+ + + P + + + Y+ +Y S E + +
Sbjct: 296 CALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDN 351
>sp|Q7RXQ1|CSN1_NEUCR COP9 signalosome complex subunit 1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-1 PE=1 SV=1
Length = 425
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 96/236 (40%), Gaps = 8/236 (3%)
Query: 48 SFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFY 107
S ++ E +D++ ++S + D L + + NL + +R + +
Sbjct: 66 SLFQAAPNEPEALLDKAWMESKEKENRDTTAHLQAELQGYKNNLIKESIRMGNEDLGKHF 125
Query: 108 IQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG 167
IGD E A++ ++ + Q +DL +++ D+ I + S+ +
Sbjct: 126 EAIGDVEAAMDSFWKMRTEVSSTEQLVDLGKLLVRVAIERRDWKSIGNHLKPLNSVNDSD 185
Query: 168 GDWER-KNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELF-----PYDTFIFYTVL 221
+ K K+ G+ + +K+AA F+++ S+ E++ P D I Y L
Sbjct: 186 PKAKALKTYSKIANGIAALGQERYKEAAFCFVEA-SSGVPPEIYNQIASPNDVAI-YGGL 243
Query: 222 TSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFGEKRSD 277
++ ++DR L+ ++D + + P++ + + +Y + R D
Sbjct: 244 LALATMDRHELQANLLDNDSFREFLQREPHIRRAITQFVNGRYAACIEILESYRPD 299
>sp|Q5BD89|CSN1_EMENI COP9 signalosome complex subunit 1 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnA PE=1 SV=2
Length = 498
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/225 (16%), Positives = 92/225 (40%), Gaps = 16/225 (7%)
Query: 59 LEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALE 118
+E Q V+ + ++E EL+ + + +G E+ + Y +IGD A +
Sbjct: 125 VERSQKVVKAETDRLEHELRGYKNNLIKESIRMGNEELGQ-------HYHRIGDLTSAFK 177
Query: 119 QLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE----RKN 174
++F + + D+ + ++ + +S +GG E +
Sbjct: 178 AYSRMRDFCTTPSHIASMLFKIINVAIERGDWLNVQSNVHRLRS---QGGKPEEQAKHQP 234
Query: 175 RLKVYEGLYCMSTRNFKKAASLFLDSISTF--TTYELFPYDTFIFYTVLTSIISLDRVSL 232
++ GL + + ++ +AA+ F+ + + T E+ + Y L ++ S+DR L
Sbjct: 235 KISAAMGLSQLHSGSYLEAANSFIATDPSLGDTFNEVLTSNDVAVYGGLCALASMDRNEL 294
Query: 233 KQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFGEKRSD 277
+++V+D + P++ ++ + +++ R+D
Sbjct: 295 QRRVLDNSSFRNFLELEPHIRRAISFFCNSKFRPCLEILEAYRAD 339
>sp|Q9QBU0|RDRP_PMTVS Replicase large subunit OS=Potato mop-top virus (isolate
Potato/Sweden/Sw) GN=rep PE=3 SV=3
Length = 1812
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 91 LGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ----KMDLVFYTLQLGFF 146
LG +++ + L +F IGD K+ + +V E+ VAV + + D++F L L +
Sbjct: 1726 LGRKDIKNSDLLSEIF-TSIGDNYKSYDDYRVLEALNVAVMERYKLRCDVMFGLLALKKY 1784
Query: 147 YMDFDLISKSIDKAKSLFEEGGDWER 172
FDL + SLF G ++R
Sbjct: 1785 INSFDLFA-------SLFSHKGRYQR 1803
>sp|Q2YTA7|SYT_STAAB Threonine--tRNA ligase OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=thrS PE=3 SV=1
Length = 645
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 72 KIEDELKKLDDRIA--DAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTE 124
+++DELK R++ D E +G ++REA + K+ + I +GDKE Q+ V +
Sbjct: 564 QLQDELKSQGVRVSIDDRNEKMG-YKIREAQMQKTPYQIVVGDKEVENNQVNVRQ 617
>sp|C6BRH1|SYT_DESAD Threonine--tRNA ligase OS=Desulfovibrio salexigens (strain ATCC
14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=thrS PE=3
SV=1
Length = 642
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 54 VAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDK 113
V +S E Q VL +R K + + D E LG +VREA L K + + IGDK
Sbjct: 543 VTDSQNEFAQKVLQFLREK------GIRAEVDDRNEKLG-YKVREAQLEKIPYMLVIGDK 595
Query: 114 EKALEQLKV 122
E A E + V
Sbjct: 596 EVAAESVNV 604
>sp|Q9C0B9|ZCHC2_HUMAN Zinc finger CCHC domain-containing protein 2 OS=Homo sapiens
GN=ZCCHC2 PE=1 SV=6
Length = 1178
Score = 31.6 bits (70), Expect = 7.3, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 16 KRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMD--QSVLDSMRTKI 73
KR HPD++ I + + +++ + SF++++ ++S+ ++ QS L + +KI
Sbjct: 424 KREERRHPDLEPILRQLFSSSSQAFLQSQKVHSFFQSISSDSLHSINNLQSSLKT--SKI 481
Query: 74 EDELKKLDDRIADAEEN-LGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESK 126
+ LK+ + EE+ L + + + H KS IG L+ L + S+
Sbjct: 482 LEHLKEDSSEASSQEEDVLQHAIIHKKHTGKSPIVNNIGTSCSPLDGLTMQYSE 535
>sp|Q3J0Z1|PYRG_RHOS4 CTP synthase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1
/ NCIB 8253 / DSM 158) GN=pyrG PE=3 SV=1
Length = 547
Score = 31.2 bits (69), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 39 SMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENL--GESEV 96
+++ A+D+ + YE +A +DQ+VLD+ I K DR D + L E EV
Sbjct: 233 AVIAAYDLKTIYEAPLAYHREGLDQAVLDAF--GISPAPKPNLDRWVDVMDRLENAEGEV 290
Query: 97 REAHLAKSLFYIQIGDKEKALEQ 119
R A + K Y Q+ D K++ +
Sbjct: 291 RVAIVGK---YTQLEDAYKSIAE 310
>sp|A4WQW2|PYRG_RHOS5 CTP synthase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH
2.4.3) GN=pyrG PE=3 SV=1
Length = 547
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 39 SMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENL--GESEV 96
+++ A+D+ + YE +A +DQ+VLD+ I K DR D + L E EV
Sbjct: 233 AVIAAYDLKTIYEAPLAYHREGLDQAVLDAF--GISPAPKPNLDRWVDVMDRLEHAEGEV 290
Query: 97 REAHLAKSLFYIQIGDKEKALEQ 119
R A + K Y Q+ D K++ +
Sbjct: 291 RVAIVGK---YTQLEDAYKSIAE 310
>sp|B9KKB0|PYRG_RHOSK CTP synthase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085)
GN=pyrG PE=3 SV=1
Length = 547
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 39 SMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENL--GESEV 96
+++ A+D+ + YE +A +DQ+VLD+ I K DR D + L E EV
Sbjct: 233 AVIAAYDLKTIYEAPLAYHREGLDQAVLDAF--GISPAPKPNLDRWVDVMDRLENAEGEV 290
Query: 97 REAHLAKSLFYIQIGDKEKALEQ 119
R A + K Y Q+ D K++ +
Sbjct: 291 RVAIVGK---YTQLEDAYKSIAE 310
>sp|A3PLA0|PYRG_RHOS1 CTP synthase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH
2.4.9) GN=pyrG PE=3 SV=1
Length = 547
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 39 SMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENL--GESEV 96
+++ A+D+ + YE +A +DQ+VLD+ I K DR D + L E EV
Sbjct: 233 AVIAAYDLKTIYEAPLAYHREGLDQAVLDAF--GISPAPKPNLDRWVDVMDRLENAEGEV 290
Query: 97 REAHLAKSLFYIQIGDKEKALEQ 119
R A + K Y Q+ D K++ +
Sbjct: 291 RVAIVGK---YTQLEDAYKSIAE 310
>sp|Q9BXK5|B2L13_HUMAN Bcl-2-like protein 13 OS=Homo sapiens GN=BCL2L13 PE=1 SV=1
Length = 485
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 61 MDQSVLDSMRTKIEDELKKLDDRIADA 87
+DQ +L ++T+IE+ELK LD I++A
Sbjct: 51 LDQEILLKVKTEIEEELKSLDKEISEA 77
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,099,878
Number of Sequences: 539616
Number of extensions: 3621236
Number of successful extensions: 13708
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 13607
Number of HSP's gapped (non-prelim): 194
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)