Query 023407
Match_columns 282
No_of_seqs 125 out of 350
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:48:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0687 26S proteasome regulat 100.0 8.8E-80 1.9E-84 563.2 27.5 274 1-275 9-282 (393)
2 KOG0686 COP9 signalosome, subu 100.0 9.4E-61 2E-65 448.2 24.4 267 10-279 46-335 (466)
3 COG5187 RPN7 26S proteasome re 100.0 1.3E-60 2.8E-65 432.4 23.8 277 1-278 13-299 (412)
4 PF10602 RPN7: 26S proteasome 100.0 2.8E-60 6.1E-65 411.0 19.4 174 62-235 1-177 (177)
5 PF14938 SNAP: Soluble NSF att 97.3 0.025 5.4E-07 52.1 17.8 177 93-271 71-257 (282)
6 PF09976 TPR_21: Tetratricopep 97.3 0.016 3.4E-07 47.8 14.7 100 94-200 45-144 (145)
7 PF13424 TPR_12: Tetratricopep 96.7 0.013 2.9E-07 42.7 8.1 71 95-165 3-77 (78)
8 cd00189 TPR Tetratricopeptide 96.4 0.043 9.3E-07 38.3 9.3 94 99-201 2-95 (100)
9 KOG1840 Kinesin light chain [C 96.3 0.65 1.4E-05 46.8 19.6 132 72-203 256-396 (508)
10 TIGR02795 tol_pal_ybgF tol-pal 96.0 0.12 2.7E-06 39.5 10.5 104 99-205 4-107 (119)
11 KOG2908 26S proteasome regulat 95.9 0.37 8.1E-06 46.0 15.0 164 107-271 85-256 (380)
12 TIGR02521 type_IV_pilW type IV 95.7 0.22 4.7E-06 41.8 11.8 100 97-203 65-164 (234)
13 PF12688 TPR_5: Tetratrico pep 95.7 0.26 5.6E-06 40.1 11.5 101 99-202 3-103 (120)
14 PF13414 TPR_11: TPR repeat; P 95.7 0.064 1.4E-06 37.9 7.0 63 98-163 4-67 (69)
15 PF14938 SNAP: Soluble NSF att 95.6 0.34 7.4E-06 44.5 13.6 175 75-257 92-275 (282)
16 PF13176 TPR_7: Tetratricopept 95.6 0.014 3E-07 37.0 2.9 33 99-131 1-33 (36)
17 KOG0548 Molecular co-chaperone 95.1 2.5 5.4E-05 42.5 18.2 144 99-261 360-510 (539)
18 CHL00033 ycf3 photosystem I as 94.9 0.5 1.1E-05 39.6 11.4 109 94-203 32-142 (168)
19 TIGR02917 PEP_TPR_lipo putativ 94.8 5.4 0.00012 40.6 21.5 102 92-202 120-221 (899)
20 TIGR02552 LcrH_SycD type III s 94.4 0.47 1E-05 37.6 9.6 96 98-202 18-113 (135)
21 COG5159 RPN6 26S proteasome re 94.2 2.1 4.5E-05 40.4 14.3 104 175-279 207-313 (421)
22 PRK02603 photosystem I assembl 94.0 0.28 6.1E-06 41.4 7.9 67 97-163 35-101 (172)
23 PRK11788 tetratricopeptide rep 93.9 5.5 0.00012 37.2 18.8 57 99-158 109-165 (389)
24 PRK11788 tetratricopeptide rep 93.6 0.87 1.9E-05 42.7 11.2 59 100-161 183-241 (389)
25 TIGR02521 type_IV_pilW type IV 93.6 1.2 2.5E-05 37.3 10.9 99 98-203 100-198 (234)
26 PF12569 NARP1: NMDA receptor- 93.4 3.2 6.9E-05 42.0 15.4 128 92-232 189-321 (517)
27 TIGR00990 3a0801s09 mitochondr 93.3 2.1 4.6E-05 43.5 14.3 60 99-161 367-426 (615)
28 PF12895 Apc3: Anaphase-promot 93.3 0.59 1.3E-05 34.5 7.7 80 110-198 2-82 (84)
29 TIGR00990 3a0801s09 mitochondr 93.3 2.7 5.9E-05 42.7 15.0 100 94-202 328-427 (615)
30 KOG2796 Uncharacterized conser 93.2 3.3 7.1E-05 38.8 13.7 158 44-205 117-283 (366)
31 TIGR02795 tol_pal_ybgF tol-pal 93.1 1.7 3.7E-05 33.0 10.4 68 96-163 38-105 (119)
32 PF13432 TPR_16: Tetratricopep 93.1 0.74 1.6E-05 32.0 7.6 59 101-162 1-59 (65)
33 KOG1497 COP9 signalosome, subu 93.1 1.1 2.3E-05 42.7 10.6 149 94-242 100-254 (399)
34 PF13429 TPR_15: Tetratricopep 93.1 0.82 1.8E-05 41.4 9.8 119 75-202 124-242 (280)
35 TIGR02917 PEP_TPR_lipo putativ 93.1 5.1 0.00011 40.7 16.6 104 98-204 602-733 (899)
36 PF13181 TPR_8: Tetratricopept 92.8 0.19 4E-06 30.6 3.6 30 98-127 2-31 (34)
37 PF07719 TPR_2: Tetratricopept 92.6 0.25 5.5E-06 29.8 4.0 31 98-128 2-32 (34)
38 TIGR03302 OM_YfiO outer membra 92.4 6.9 0.00015 34.1 16.1 130 94-229 67-218 (235)
39 KOG1464 COP9 signalosome, subu 92.4 1.8 4E-05 40.6 11.0 171 100-280 148-335 (440)
40 cd00189 TPR Tetratricopeptide 91.9 1.3 2.8E-05 30.4 7.7 62 98-162 35-96 (100)
41 KOG1125 TPR repeat-containing 91.8 2.2 4.7E-05 43.3 11.5 135 99-242 432-570 (579)
42 PF00515 TPR_1: Tetratricopept 91.6 0.38 8.2E-06 29.3 4.0 30 98-127 2-31 (34)
43 KOG1463 26S proteasome regulat 91.5 1.9 4.2E-05 41.4 10.2 172 102-279 133-315 (411)
44 PRK10370 formate-dependent nit 91.3 5.4 0.00012 34.8 12.5 114 74-202 56-172 (198)
45 PRK11189 lipoprotein NlpI; Pro 90.9 7.5 0.00016 35.9 13.6 95 97-201 98-192 (296)
46 PLN03088 SGT1, suppressor of 90.9 2.9 6.4E-05 39.9 11.2 94 100-202 5-98 (356)
47 COG4649 Uncharacterized protei 90.7 6.3 0.00014 34.8 11.9 138 63-204 60-197 (221)
48 COG4235 Cytochrome c biogenesi 90.7 3.8 8.3E-05 38.3 11.3 119 73-203 138-259 (287)
49 PF13374 TPR_10: Tetratricopep 90.6 0.44 9.5E-06 29.8 3.6 31 97-127 2-32 (42)
50 KOG2758 Translation initiation 90.2 18 0.0004 34.7 21.8 136 30-166 34-199 (432)
51 cd05804 StaR_like StaR_like; a 89.9 16 0.00035 33.7 16.5 141 62-202 146-335 (355)
52 PF13424 TPR_12: Tetratricopep 89.7 1.7 3.8E-05 31.2 6.8 53 72-125 20-74 (78)
53 PRK10803 tol-pal system protei 89.4 1.9 4.2E-05 39.6 8.3 98 105-205 151-248 (263)
54 PF12862 Apc5: Anaphase-promot 89.4 1.5 3.3E-05 33.5 6.5 63 107-169 8-76 (94)
55 PLN03218 maturation of RBCL 1; 89.4 38 0.00083 37.4 22.0 92 98-198 720-811 (1060)
56 KOG1129 TPR repeat-containing 89.0 3.4 7.4E-05 39.7 9.6 163 32-203 241-424 (478)
57 cd05804 StaR_like StaR_like; a 88.7 5.2 0.00011 37.0 10.8 93 101-198 118-210 (355)
58 PF13428 TPR_14: Tetratricopep 88.7 0.84 1.8E-05 29.8 4.0 33 98-130 2-34 (44)
59 KOG1840 Kinesin light chain [C 88.3 8.4 0.00018 38.9 12.5 162 76-237 176-348 (508)
60 COG1849 Uncharacterized protei 88.3 3.1 6.7E-05 32.2 7.3 58 67-124 4-68 (90)
61 CHL00033 ycf3 photosystem I as 88.1 6.3 0.00014 32.8 10.0 77 97-173 72-154 (168)
62 PRK10049 pgaA outer membrane p 88.1 4.8 0.0001 42.3 11.2 99 97-204 359-457 (765)
63 PRK15359 type III secretion sy 88.1 5.9 0.00013 32.6 9.6 94 100-202 27-120 (144)
64 PF13174 TPR_6: Tetratricopept 87.8 0.88 1.9E-05 27.0 3.4 29 98-126 1-29 (33)
65 TIGR03302 OM_YfiO outer membra 87.2 19 0.00041 31.3 14.8 106 97-205 33-146 (235)
66 PF12895 Apc3: Anaphase-promot 86.9 2.3 5.1E-05 31.2 6.0 58 99-160 27-84 (84)
67 PRK12370 invasion protein regu 86.5 30 0.00066 34.9 15.6 25 178-202 445-469 (553)
68 PF10300 DUF3808: Protein of u 86.4 37 0.0008 33.8 15.9 184 12-217 190-392 (468)
69 KOG0547 Translocase of outer m 86.2 3.5 7.6E-05 41.4 8.2 61 99-163 117-178 (606)
70 PRK11447 cellulose synthase su 85.8 62 0.0013 35.8 21.0 101 97-203 303-414 (1157)
71 KOG1155 Anaphase-promoting com 85.8 10 0.00022 38.0 11.1 96 97-195 432-528 (559)
72 PRK04841 transcriptional regul 85.7 22 0.00047 37.6 14.6 108 94-202 528-640 (903)
73 KOG0548 Molecular co-chaperone 85.7 12 0.00025 37.9 11.6 150 101-272 6-156 (539)
74 PLN03081 pentatricopeptide (PP 85.1 23 0.0005 36.6 14.2 93 99-200 292-386 (697)
75 PRK09782 bacteriophage N4 rece 85.0 20 0.00043 39.3 14.0 154 98-275 45-209 (987)
76 PRK11447 cellulose synthase su 83.9 8.4 0.00018 42.5 10.8 97 99-204 605-701 (1157)
77 KOG0553 TPR repeat-containing 83.5 11 0.00024 35.5 9.9 113 36-168 79-200 (304)
78 smart00028 TPR Tetratricopepti 83.4 2.5 5.5E-05 23.1 3.8 29 98-126 2-30 (34)
79 PRK14574 hmsH outer membrane p 83.1 13 0.00028 39.9 11.4 23 102-124 73-95 (822)
80 PF13429 TPR_15: Tetratricopep 82.8 12 0.00025 33.8 9.8 160 99-275 80-241 (280)
81 PRK11189 lipoprotein NlpI; Pro 82.6 40 0.00086 31.0 17.7 102 97-202 132-264 (296)
82 PRK04841 transcriptional regul 82.3 22 0.00047 37.6 12.9 106 98-203 492-602 (903)
83 PF02064 MAS20: MAS20 protein 81.7 2.7 5.9E-05 34.4 4.6 50 90-139 56-105 (121)
84 PF14559 TPR_19: Tetratricopep 81.4 2.8 6E-05 29.1 4.1 52 108-162 2-53 (68)
85 KOG1174 Anaphase-promoting com 80.9 32 0.0007 34.2 12.2 107 99-205 234-399 (564)
86 PF13525 YfiO: Outer membrane 80.6 34 0.00073 29.7 11.5 110 94-205 39-172 (203)
87 COG2976 Uncharacterized protei 80.3 13 0.00028 33.2 8.6 71 68-138 123-202 (207)
88 KOG0553 TPR repeat-containing 79.7 13 0.00028 35.1 8.8 86 100-201 84-176 (304)
89 KOG1155 Anaphase-promoting com 78.9 35 0.00075 34.4 11.9 102 59-162 428-535 (559)
90 PRK12370 invasion protein regu 78.7 78 0.0017 31.9 17.0 96 97-201 338-433 (553)
91 KOG2076 RNA polymerase III tra 78.5 1E+02 0.0022 33.2 18.4 256 8-275 134-441 (895)
92 PF09986 DUF2225: Uncharacteri 78.3 10 0.00022 33.9 7.5 77 62-139 123-209 (214)
93 PLN03081 pentatricopeptide (PP 77.6 92 0.002 32.2 17.3 55 99-159 362-416 (697)
94 PF10345 Cohesin_load: Cohesin 77.6 49 0.0011 33.9 13.3 133 89-223 93-231 (608)
95 PLN03077 Protein ECB2; Provisi 75.9 52 0.0011 34.9 13.3 57 98-160 324-380 (857)
96 PF13525 YfiO: Outer membrane 75.8 16 0.00034 31.8 8.0 63 98-160 6-68 (203)
97 PF08631 SPO22: Meiosis protei 75.8 36 0.00077 31.2 10.7 103 94-201 32-148 (278)
98 PRK10866 outer membrane biogen 75.8 61 0.0013 29.2 16.4 138 94-235 66-233 (243)
99 TIGR00540 hemY_coli hemY prote 75.5 33 0.00071 33.1 10.9 56 104-162 160-215 (409)
100 PRK10049 pgaA outer membrane p 75.5 34 0.00075 36.0 11.7 60 99-162 85-144 (765)
101 TIGR00985 3a0801s04tom mitocho 75.1 37 0.0008 28.8 9.6 46 94-139 87-133 (148)
102 KOG1127 TPR repeat-containing 74.4 19 0.00041 39.2 9.3 154 6-201 947-1102(1238)
103 PF13371 TPR_9: Tetratricopept 74.1 6.5 0.00014 27.6 4.3 30 99-128 31-60 (73)
104 PRK15174 Vi polysaccharide exp 73.9 33 0.00071 35.5 11.0 96 98-202 247-346 (656)
105 KOG4555 TPR repeat-containing 73.4 56 0.0012 27.7 10.5 91 100-196 46-144 (175)
106 PF13431 TPR_17: Tetratricopep 73.3 2.8 6.1E-05 26.1 1.9 22 97-118 13-34 (34)
107 PF13041 PPR_2: PPR repeat fam 73.2 6.3 0.00014 26.1 3.8 33 99-131 5-37 (50)
108 PF11817 Foie-gras_1: Foie gra 73.2 41 0.00089 30.3 10.2 85 72-156 153-240 (247)
109 PF13371 TPR_9: Tetratricopept 73.1 16 0.00035 25.5 6.2 58 103-163 1-58 (73)
110 PLN03077 Protein ECB2; Provisi 73.1 1.3E+02 0.0029 31.9 16.7 156 99-276 556-719 (857)
111 PF12862 Apc5: Anaphase-promot 73.1 24 0.00053 26.8 7.5 39 94-132 38-76 (94)
112 COG1516 FliS Flagellin-specifi 72.7 15 0.00032 30.6 6.5 52 115-166 5-63 (132)
113 KOG4340 Uncharacterized conser 72.1 62 0.0014 31.1 11.2 122 8-129 291-446 (459)
114 TIGR00756 PPR pentatricopeptid 71.7 7.4 0.00016 22.7 3.5 30 100-129 3-32 (35)
115 KOG3081 Vesicle coat complex C 71.6 90 0.0019 29.3 13.0 130 71-205 86-238 (299)
116 KOG1586 Protein required for f 71.3 34 0.00074 31.6 9.0 105 100-205 116-229 (288)
117 KOG1156 N-terminal acetyltrans 71.2 42 0.00091 34.9 10.5 105 94-201 368-509 (700)
118 PF13432 TPR_16: Tetratricopep 71.1 7.6 0.00016 26.7 4.0 32 96-127 30-61 (65)
119 PF07721 TPR_4: Tetratricopept 71.1 6.2 0.00013 22.8 2.9 23 99-121 3-25 (26)
120 PLN03218 maturation of RBCL 1; 70.9 1.8E+02 0.0038 32.4 22.4 162 98-270 615-809 (1060)
121 PRK15174 Vi polysaccharide exp 70.7 56 0.0012 33.9 11.8 97 98-203 285-381 (656)
122 PLN03098 LPA1 LOW PSII ACCUMUL 70.7 23 0.0005 35.3 8.4 52 75-126 86-141 (453)
123 PRK15359 type III secretion sy 70.5 24 0.00053 28.8 7.5 64 97-163 58-121 (144)
124 KOG1089 Myotubularin-related p 70.3 11 0.00023 38.6 6.1 154 93-273 269-461 (573)
125 KOG0551 Hsp90 co-chaperone CNS 69.9 22 0.00048 34.3 7.8 86 77-163 62-148 (390)
126 PF09976 TPR_21: Tetratricopep 69.6 58 0.0013 26.3 13.0 88 109-199 23-110 (145)
127 KOG2300 Uncharacterized conser 68.9 1.4E+02 0.003 30.4 15.2 165 94-261 4-215 (629)
128 KOG3677 RNA polymerase I-assoc 68.9 3.8 8.2E-05 40.4 2.5 84 137-223 238-332 (525)
129 PLN03088 SGT1, suppressor of 68.5 27 0.00058 33.3 8.3 62 99-163 38-99 (356)
130 KOG2076 RNA polymerase III tra 68.2 38 0.00082 36.4 9.8 68 99-171 175-242 (895)
131 PF09440 eIF3_N: eIF3 subunit 68.1 69 0.0015 26.5 10.9 90 10-102 13-103 (133)
132 KOG1127 TPR repeat-containing 67.2 88 0.0019 34.4 12.2 114 92-222 487-603 (1238)
133 PF01535 PPR: PPR repeat; Int 67.2 7.4 0.00016 22.4 2.8 27 100-126 3-29 (31)
134 PRK15363 pathogenicity island 67.1 80 0.0017 27.0 10.6 100 94-202 32-131 (157)
135 PF13812 PPR_3: Pentatricopept 66.5 13 0.00027 21.9 3.8 30 99-128 3-32 (34)
136 KOG0624 dsRNA-activated protei 66.2 15 0.00032 35.7 5.9 64 97-171 223-286 (504)
137 TIGR01716 RGG_Cterm transcript 65.8 41 0.00089 29.1 8.4 65 129-193 123-187 (220)
138 PRK10866 outer membrane biogen 65.8 1E+02 0.0022 27.7 13.6 58 102-159 180-237 (243)
139 PRK09782 bacteriophage N4 rece 65.6 74 0.0016 34.9 11.8 51 109-163 588-638 (987)
140 PF14853 Fis1_TPR_C: Fis1 C-te 65.4 20 0.00043 24.9 5.0 40 97-136 1-40 (53)
141 KOG1173 Anaphase-promoting com 65.4 24 0.00052 36.1 7.4 117 69-205 289-411 (611)
142 PF03399 SAC3_GANP: SAC3/GANP/ 64.8 89 0.0019 26.7 10.3 31 234-271 127-157 (204)
143 PF04733 Coatomer_E: Coatomer 64.8 36 0.00078 31.6 8.2 96 100-203 105-230 (290)
144 PRK15179 Vi polysaccharide bio 63.8 57 0.0012 34.3 10.2 112 75-202 70-182 (694)
145 PF14559 TPR_19: Tetratricopep 63.6 20 0.00044 24.6 5.0 33 97-129 25-57 (68)
146 PF12854 PPR_1: PPR repeat 63.4 12 0.00025 23.1 3.3 25 99-123 9-33 (34)
147 PF03704 BTAD: Bacterial trans 63.0 78 0.0017 25.3 9.4 103 48-172 27-136 (146)
148 COG5010 TadD Flp pilus assembl 62.3 1.3E+02 0.0029 27.8 12.1 107 85-200 58-194 (257)
149 TIGR02552 LcrH_SycD type III s 61.4 75 0.0016 24.7 12.3 31 97-127 85-115 (135)
150 TIGR03504 FimV_Cterm FimV C-te 61.3 13 0.00027 24.9 3.3 26 100-125 2-27 (44)
151 PF04053 Coatomer_WDAD: Coatom 60.0 39 0.00085 33.5 7.9 130 100-276 298-430 (443)
152 PRK12798 chemotaxis protein; R 59.1 38 0.00083 33.4 7.4 86 129-221 252-337 (421)
153 KOG3785 Uncharacterized conser 58.4 29 0.00062 34.0 6.3 69 89-160 49-117 (557)
154 PF05843 Suf: Suppressor of fo 58.1 44 0.00096 30.6 7.5 83 78-166 57-139 (280)
155 cd02680 MIT_calpain7_2 MIT: do 58.1 21 0.00046 26.6 4.4 52 108-165 17-68 (75)
156 KOG0543 FKBP-type peptidyl-pro 56.8 63 0.0014 31.7 8.4 96 101-202 212-319 (397)
157 PRK14720 transcript cleavage f 56.0 2.4E+02 0.0053 30.8 13.4 173 79-266 205-398 (906)
158 PRK10370 formate-dependent nit 55.9 32 0.00069 29.9 5.9 64 99-165 109-175 (198)
159 KOG4162 Predicted calmodulin-b 55.1 72 0.0016 33.8 9.0 99 100-201 653-781 (799)
160 TIGR00208 fliS flagellar biosy 54.1 79 0.0017 25.6 7.5 52 115-166 5-63 (124)
161 PF10255 Paf67: RNA polymerase 53.3 24 0.00052 34.7 5.1 80 123-203 108-193 (404)
162 PRK05685 fliS flagellar protei 53.0 78 0.0017 25.9 7.4 52 115-166 5-67 (132)
163 PF07319 DnaI_N: Primosomal pr 52.9 9 0.0002 29.6 1.7 23 230-252 22-45 (94)
164 PRK15363 pathogenicity island 52.4 25 0.00054 30.0 4.4 54 74-127 79-133 (157)
165 PF04010 DUF357: Protein of un 52.1 27 0.00058 26.1 4.0 30 95-124 33-62 (75)
166 KOG2280 Vacuolar assembly/sort 51.6 1.1E+02 0.0024 32.6 9.6 156 6-200 636-796 (829)
167 PRK10803 tol-pal system protei 51.4 2E+02 0.0043 26.4 11.5 65 96-160 179-243 (263)
168 PF14235 DUF4337: Domain of un 51.0 1.5E+02 0.0034 25.1 10.2 102 35-155 29-134 (157)
169 COG4259 Uncharacterized protei 49.7 57 0.0012 26.2 5.7 67 73-140 49-115 (121)
170 KOG4234 TPR repeat-containing 49.7 2E+02 0.0044 26.1 12.2 45 100-144 98-142 (271)
171 KOG2376 Signal recognition par 49.7 2.2E+02 0.0049 29.5 11.2 124 76-201 91-251 (652)
172 PRK15331 chaperone protein Sic 49.5 1.7E+02 0.0037 25.2 12.0 120 74-202 6-133 (165)
173 PF04100 Vps53_N: Vps53-like, 49.2 2.6E+02 0.0056 27.2 12.4 113 66-200 23-143 (383)
174 PF11207 DUF2989: Protein of u 48.8 72 0.0016 28.5 6.9 79 73-152 93-196 (203)
175 TIGR03362 VI_chp_7 type VI sec 47.8 1.1E+02 0.0024 28.8 8.4 72 102-173 218-291 (301)
176 PF13512 TPR_18: Tetratricopep 47.5 1.2E+02 0.0026 25.5 7.7 51 97-149 47-98 (142)
177 PF09295 ChAPs: ChAPs (Chs5p-A 47.4 2.8E+02 0.0062 27.1 13.7 55 100-157 237-291 (395)
178 PRK14574 hmsH outer membrane p 46.8 1.7E+02 0.0036 31.5 10.5 101 95-204 414-514 (822)
179 cd02684 MIT_2 MIT: domain cont 46.7 45 0.00098 24.6 4.6 50 104-165 13-68 (75)
180 COG4700 Uncharacterized protei 46.5 2.2E+02 0.0048 25.6 12.0 134 83-229 75-208 (251)
181 KOG1070 rRNA processing protei 45.8 1.3E+02 0.0029 34.3 9.5 97 99-204 1460-1560(1710)
182 COG5010 TadD Flp pilus assembl 45.7 1.9E+02 0.004 26.8 9.2 90 97-195 134-223 (257)
183 KOG4648 Uncharacterized conser 45.7 2.1E+02 0.0045 28.1 9.8 50 100-149 100-153 (536)
184 PF07079 DUF1347: Protein of u 45.6 1.3E+02 0.0027 30.5 8.6 91 104-200 13-105 (549)
185 PF06248 Zw10: Centromere/kine 45.5 3.5E+02 0.0076 27.6 13.0 100 74-182 52-155 (593)
186 PF04184 ST7: ST7 protein; In 45.5 2.5E+02 0.0055 28.6 10.8 61 100-162 262-323 (539)
187 PF09613 HrpB1_HrpK: Bacterial 45.5 1.4E+02 0.0031 25.6 8.0 72 125-202 1-72 (160)
188 KOG1126 DNA-binding cell divis 45.3 2.1E+02 0.0046 29.8 10.5 158 99-276 423-585 (638)
189 KOG0547 Translocase of outer m 45.1 88 0.0019 31.8 7.5 92 99-201 464-564 (606)
190 PF04733 Coatomer_E: Coatomer 44.9 2.6E+02 0.0055 25.9 10.4 64 97-163 201-265 (290)
191 PF10579 Rapsyn_N: Rapsyn N-te 44.6 1.4E+02 0.003 22.7 8.6 61 99-159 8-68 (80)
192 PF13414 TPR_11: TPR repeat; P 44.1 30 0.00066 23.8 3.2 29 97-125 37-66 (69)
193 PF14276 DUF4363: Domain of un 43.8 1.6E+02 0.0035 23.3 8.0 60 107-166 38-109 (121)
194 cd02681 MIT_calpain7_1 MIT: do 43.5 1E+02 0.0023 22.9 6.1 57 101-165 10-69 (76)
195 COG3063 PilF Tfp pilus assembl 42.5 2.8E+02 0.006 25.6 10.9 129 34-163 39-168 (250)
196 PRK10153 DNA-binding transcrip 41.9 1.9E+02 0.0042 29.2 9.7 61 98-162 421-481 (517)
197 PRK10747 putative protoheme IX 41.8 3.2E+02 0.007 26.1 14.7 58 103-163 159-216 (398)
198 PF04840 Vps16_C: Vps16, C-ter 41.1 3.2E+02 0.0068 25.8 12.9 44 139-197 242-285 (319)
199 KOG2002 TPR-containing nuclear 41.0 45 0.00098 36.2 5.1 66 98-164 681-746 (1018)
200 PF03704 BTAD: Bacterial trans 40.5 1.9E+02 0.0041 23.0 9.8 43 99-141 98-145 (146)
201 COG1729 Uncharacterized protei 40.1 1.2E+02 0.0026 28.1 7.1 64 97-161 178-242 (262)
202 PF04053 Coatomer_WDAD: Coatom 39.6 1.4E+02 0.003 29.7 8.1 106 69-200 323-428 (443)
203 smart00745 MIT Microtubule Int 39.6 1.4E+02 0.0031 21.4 6.3 53 103-165 14-70 (77)
204 PRK10153 DNA-binding transcrip 39.6 76 0.0016 32.1 6.3 59 97-160 453-511 (517)
205 PRK10747 putative protoheme IX 39.2 3.5E+02 0.0077 25.9 14.2 90 100-197 121-210 (398)
206 PRK02603 photosystem I assembl 39.0 2.2E+02 0.0048 23.5 13.3 32 97-128 72-103 (172)
207 PF14561 TPR_20: Tetratricopep 38.8 1.6E+02 0.0034 22.4 6.7 63 75-143 6-70 (90)
208 KOG0624 dsRNA-activated protei 38.7 1.6E+02 0.0034 29.0 7.8 104 93-200 102-222 (504)
209 PF07889 DUF1664: Protein of u 38.5 1.8E+02 0.0038 24.0 7.2 57 64-120 57-115 (126)
210 KOG0276 Vesicle coat complex C 38.4 1.4E+02 0.0031 31.1 7.9 131 100-274 617-747 (794)
211 smart00386 HAT HAT (Half-A-TPR 38.3 71 0.0015 17.9 3.8 21 111-131 1-21 (33)
212 PF10345 Cohesin_load: Cohesin 38.2 4.6E+02 0.0099 26.9 17.3 129 64-196 108-247 (608)
213 KOG4626 O-linked N-acetylgluco 38.1 58 0.0013 34.2 5.1 48 97-144 116-180 (966)
214 KOG2911 Uncharacterized conser 37.8 1.2E+02 0.0026 30.1 7.0 67 65-144 237-309 (439)
215 PF12309 KBP_C: KIF-1 binding 37.8 3.9E+02 0.0084 25.9 11.8 99 30-132 201-344 (371)
216 KOG2114 Vacuolar assembly/sort 37.7 1.3E+02 0.0027 32.5 7.6 69 84-152 354-435 (933)
217 KOG0495 HAT repeat protein [RN 37.5 3.6E+02 0.0079 28.7 10.7 89 69-162 558-646 (913)
218 KOG1258 mRNA processing protei 37.3 3.1E+02 0.0067 28.3 10.1 128 100-230 82-228 (577)
219 COG2956 Predicted N-acetylgluc 37.1 4E+02 0.0087 25.9 11.3 43 92-134 64-107 (389)
220 PRK14720 transcript cleavage f 36.7 3.8E+02 0.0081 29.4 11.2 38 98-135 117-154 (906)
221 cd02682 MIT_AAA_Arch MIT: doma 36.3 1.8E+02 0.0039 21.7 7.6 57 100-166 9-69 (75)
222 COG3063 PilF Tfp pilus assembl 36.1 3.5E+02 0.0076 24.9 14.5 164 92-273 30-198 (250)
223 KOG1126 DNA-binding cell divis 35.4 92 0.002 32.4 6.1 92 98-199 490-582 (638)
224 KOG1130 Predicted G-alpha GTPa 34.6 3.8E+02 0.0082 27.0 9.9 83 83-165 221-310 (639)
225 COG1283 NptA Na+/phosphate sym 34.5 3.2E+02 0.0069 28.0 9.7 102 62-164 361-481 (533)
226 TIGR00593 pola DNA polymerase 32.7 1.2E+02 0.0027 32.9 6.9 52 35-86 471-532 (887)
227 KOG4077 Cytochrome c oxidase, 32.7 2.1E+02 0.0045 24.1 6.7 57 76-132 46-119 (149)
228 cd08638 DNA_pol_A_theta DNA po 32.4 1.7E+02 0.0038 28.1 7.4 29 58-86 1-29 (373)
229 COG3416 Uncharacterized protei 32.2 3.4E+02 0.0074 24.5 8.4 68 13-89 9-76 (233)
230 PF06757 Ins_allergen_rp: Inse 32.0 74 0.0016 27.3 4.3 50 224-273 111-167 (179)
231 KOG0276 Vesicle coat complex C 31.9 82 0.0018 32.8 5.1 81 98-200 667-747 (794)
232 KOG1070 rRNA processing protei 31.9 4.9E+02 0.011 30.1 11.1 111 47-163 1550-1663(1710)
233 COG5071 RPN5 26S proteasome re 31.6 3.9E+02 0.0084 25.8 9.1 100 100-200 134-238 (439)
234 PF01630 Glyco_hydro_56: Hyalu 31.4 73 0.0016 30.6 4.5 49 152-200 79-163 (337)
235 PF07923 N1221: N1221-like pro 31.0 1.2E+02 0.0026 28.1 5.8 38 154-194 59-96 (293)
236 COG4783 Putative Zn-dependent 30.3 5.9E+02 0.013 25.8 10.8 42 131-172 422-464 (484)
237 PF10516 SHNi-TPR: SHNi-TPR; 30.1 91 0.002 20.1 3.4 28 98-125 2-29 (38)
238 COG3071 HemY Uncharacterized e 30.0 3.7E+02 0.0081 26.4 9.0 106 8-136 262-367 (400)
239 PF12289 Rotavirus_VP1: Rotavi 30.0 28 0.00062 23.6 1.0 43 173-215 9-51 (52)
240 PRK06305 DNA polymerase III su 30.0 5.6E+02 0.012 25.4 12.1 40 108-147 258-297 (451)
241 COG5107 RNA14 Pre-mRNA 3'-end 30.0 1.2E+02 0.0026 30.8 5.7 96 99-200 304-423 (660)
242 TIGR02561 HrpB1_HrpK type III 29.7 2.9E+02 0.0062 23.6 7.3 72 126-203 2-73 (153)
243 PRK09111 DNA polymerase III su 29.6 5.9E+02 0.013 26.4 11.0 42 100-142 262-303 (598)
244 PRK06771 hypothetical protein; 29.5 1.2E+02 0.0027 23.6 4.6 51 66-124 21-79 (93)
245 PLN03098 LPA1 LOW PSII ACCUMUL 29.3 1.5E+02 0.0032 29.7 6.3 67 96-162 74-140 (453)
246 COG4192 Signal transduction hi 29.1 4.2E+02 0.0091 27.1 9.3 39 128-166 463-501 (673)
247 KOG2002 TPR-containing nuclear 29.0 2.3E+02 0.005 31.1 7.9 100 98-204 271-372 (1018)
248 PF09986 DUF2225: Uncharacteri 29.0 3.6E+02 0.0078 23.9 8.3 100 106-205 86-196 (214)
249 KOG1760 Molecular chaperone Pr 28.7 1.8E+02 0.004 24.0 5.7 42 63-112 83-124 (131)
250 KOG2300 Uncharacterized conser 28.5 2.7E+02 0.0059 28.5 7.9 97 98-202 368-473 (629)
251 PRK14957 DNA polymerase III su 28.1 3.2E+02 0.0068 28.0 8.6 46 100-146 249-295 (546)
252 PRK14971 DNA polymerase III su 27.6 7.1E+02 0.015 25.8 11.7 47 102-149 253-299 (614)
253 PF05384 DegS: Sensor protein 27.2 4E+02 0.0086 22.8 11.0 69 92-165 75-157 (159)
254 KOG3785 Uncharacterized conser 27.2 2.3E+02 0.0049 28.0 6.9 86 181-276 292-387 (557)
255 PRK14953 DNA polymerase III su 27.0 3E+02 0.0065 27.6 8.2 39 109-147 257-295 (486)
256 PRK10316 hypothetical protein; 26.9 2.1E+02 0.0045 25.7 6.2 145 124-278 44-199 (209)
257 PF07575 Nucleopor_Nup85: Nup8 26.0 1.2E+02 0.0027 30.7 5.3 97 93-201 421-522 (566)
258 PF02284 COX5A: Cytochrome c o 25.9 3.5E+02 0.0076 21.7 7.7 50 93-142 26-90 (108)
259 KOG1128 Uncharacterized conser 25.5 1.2E+02 0.0026 32.2 5.0 73 96-171 552-624 (777)
260 KOG2047 mRNA splicing factor [ 25.4 85 0.0018 33.0 3.9 68 99-166 250-332 (835)
261 KOG2047 mRNA splicing factor [ 25.1 2.2E+02 0.0047 30.1 6.7 71 95-165 385-456 (835)
262 PRK05755 DNA polymerase I; Pro 24.7 2.4E+02 0.0052 30.4 7.5 54 34-87 462-526 (880)
263 PF09295 ChAPs: ChAPs (Chs5p-A 24.7 6.7E+02 0.014 24.5 13.0 93 101-205 204-298 (395)
264 KOG2581 26S proteasome regulat 24.7 3.5E+02 0.0076 27.0 7.8 135 139-280 214-349 (493)
265 KOG0977 Nuclear envelope prote 24.6 3.1E+02 0.0068 28.1 7.8 62 70-131 108-171 (546)
266 PF12739 TRAPPC-Trs85: ER-Golg 24.4 6.6E+02 0.014 24.4 10.0 110 92-203 203-329 (414)
267 PF01895 PhoU: PhoU domain; I 24.4 2.6E+02 0.0056 19.7 6.2 54 62-116 23-83 (88)
268 KOG0396 Uncharacterized conser 24.3 6.8E+02 0.015 24.5 13.7 120 71-196 89-213 (389)
269 TIGR00540 hemY_coli hemY prote 23.9 6.4E+02 0.014 24.1 18.7 96 98-199 264-360 (409)
270 PF15079 DUF4546: Domain of un 23.8 4.9E+02 0.011 22.7 7.9 18 40-57 7-24 (205)
271 PF08671 SinI: Anti-repressor 23.7 1.2E+02 0.0026 18.6 2.9 14 61-74 1-14 (30)
272 PF02561 FliS: Flagellar prote 23.6 50 0.0011 26.4 1.6 52 114-165 2-60 (122)
273 KOG1941 Acetylcholine receptor 23.6 86 0.0019 30.9 3.4 37 98-134 247-283 (518)
274 PF01121 CoaE: Dephospho-CoA k 23.5 69 0.0015 27.6 2.6 36 226-261 62-99 (180)
275 PF03357 Snf7: Snf7; InterPro 23.1 2.4E+02 0.0051 23.2 5.8 65 67-144 7-77 (171)
276 PRK14975 bifunctional 3'-5' ex 23.1 2.8E+02 0.0061 28.2 7.3 31 57-87 176-216 (553)
277 PF13512 TPR_18: Tetratricopep 23.0 4.5E+02 0.0098 22.0 10.7 102 99-205 12-130 (142)
278 PRK14734 coaE dephospho-CoA ki 23.0 78 0.0017 27.5 2.8 35 226-260 63-99 (200)
279 PF01726 LexA_DNA_bind: LexA D 23.0 1.3E+02 0.0028 21.6 3.5 32 29-60 7-38 (65)
280 TIGR02397 dnaX_nterm DNA polym 22.9 6E+02 0.013 23.4 13.3 38 110-147 256-293 (355)
281 PRK13184 pknD serine/threonine 22.8 1E+03 0.023 26.1 12.8 91 127-224 760-852 (932)
282 KOG3617 WD40 and TPR repeat-co 22.6 1.1E+02 0.0023 33.4 4.0 51 101-169 916-966 (1416)
283 cd00923 Cyt_c_Oxidase_Va Cytoc 22.4 4E+02 0.0087 21.2 7.0 41 92-132 22-77 (103)
284 PF09613 HrpB1_HrpK: Bacterial 22.4 4E+02 0.0086 22.8 6.9 94 77-185 29-125 (160)
285 PF11272 DUF3072: Protein of u 22.3 1.6E+02 0.0034 21.0 3.7 35 47-84 21-55 (57)
286 KOG1173 Anaphase-promoting com 22.0 3.6E+02 0.0079 27.9 7.5 81 79-163 436-518 (611)
287 PRK14970 DNA polymerase III su 21.8 6.7E+02 0.015 23.5 9.5 39 109-147 246-284 (367)
288 smart00671 SEL1 Sel1-like repe 21.6 1.6E+02 0.0036 17.1 3.4 27 98-124 2-32 (36)
289 PF08631 SPO22: Meiosis protei 21.5 5.4E+02 0.012 23.3 8.2 84 108-191 4-101 (278)
290 KOG1695 Glutathione S-transfer 21.4 1.8E+02 0.0038 25.9 4.8 31 200-230 142-173 (206)
291 COG4105 ComL DNA uptake lipopr 21.2 6.6E+02 0.014 23.2 13.2 114 89-205 64-198 (254)
292 COG4783 Putative Zn-dependent 21.1 8.7E+02 0.019 24.6 11.4 28 100-127 411-438 (484)
293 PF06602 Myotub-related: Myotu 20.9 1.4E+02 0.0031 28.6 4.4 145 107-268 169-343 (353)
294 KOG3850 Predicted membrane pro 20.7 8.3E+02 0.018 24.2 10.7 84 31-120 262-358 (455)
295 PRK15331 chaperone protein Sic 20.4 1.6E+02 0.0035 25.4 4.1 29 100-128 108-136 (165)
296 TIGR03493 cellullose_BcsF cell 20.4 58 0.0013 23.5 1.2 23 210-232 1-23 (62)
297 KOG1130 Predicted G-alpha GTPa 20.4 4E+02 0.0086 26.9 7.2 95 70-164 161-265 (639)
298 COG4806 RhaA L-rhamnose isomer 20.1 2.4E+02 0.0053 26.8 5.5 41 35-75 373-413 (419)
No 1
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-80 Score=563.25 Aligned_cols=274 Identities=54% Similarity=0.937 Sum_probs=267.7
Q ss_pred CCCCCCCCcchHHhhHhHhhcCCCCcchhhHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q 023407 1 MDSEGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKL 80 (282)
Q Consensus 1 ~~~~~~~~p~~~l~~l~f~~~~~~~~~~~~~~a~~~ll~~ik~~~m~~~Y~~l~~~~~~~~D~~~~~~~~~~n~~~l~~L 80 (282)
++++++++|+++++|++|.++||.... .++++.+.+++.|+.++|+|+|+.+|+...|.+|+.++++|.++|++++++|
T Consensus 9 ~~e~~~~~p~le~sq~~FlLt~p~~~~-~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~el 87 (393)
T KOG0687|consen 9 EEETLMRVPDLELSQLRFLLTHPEVLG-QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKEL 87 (393)
T ss_pred cccccccCcchhHHHHHHHHcCccccC-cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHH
Confidence 457788899999999999999998764 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHH
Q 023407 81 DDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (282)
Q Consensus 81 e~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA 160 (282)
+++++++++|+|+.|+|+|+..+|+|||+|||+++|++++.++.+++++.||+||++|+.||+|+|++|.+.|...|+||
T Consensus 88 d~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ieka 167 (393)
T KOG0687|consen 88 DEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKA 167 (393)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhccCChHHHHHHccCCh
Q 023407 161 KSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAP 240 (282)
Q Consensus 161 ~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLasl~R~eLk~kvl~~~ 240 (282)
+.++|+|||||||||||+|+|+|+|+.||||+||.+|+|++|||||+|||||++||.|+|+||+++|+|++||+|||++|
T Consensus 168 k~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~dlktKVi~~~ 247 (393)
T KOG0687|consen 168 KSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVDLKTKVIKCP 247 (393)
T ss_pred HHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheeccchHHhhhcCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCchHHHHHHHHhcCChhHHHHHHHHhh
Q 023407 241 EILTVIGKIPYLSEFLNSLYDCQYKSFFSAFGEKR 275 (282)
Q Consensus 241 e~~~~l~~~P~l~~ll~sfy~~~Y~~~~~~L~~~~ 275 (282)
|++++++..|.++++++|+|+|+|+.||..|..++
T Consensus 248 Evl~vl~~l~~~~q~l~SLY~C~Y~~Ff~~L~~~~ 282 (393)
T KOG0687|consen 248 EVLEVLHKLPSVSQLLNSLYECDYSDFFNDLAAVE 282 (393)
T ss_pred HHHHHhhcCchHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999997664
No 2
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=9.4e-61 Score=448.23 Aligned_cols=267 Identities=19% Similarity=0.236 Sum_probs=252.3
Q ss_pred chHHhhHhHhhcCCCCcchhhHHHHHHHHHHHHh-cCCHHHHHHHHH--hc-----------------CCCCCHHHHHHH
Q 023407 10 HLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKA-HDMASFYETLVA--ES-----------------VLEMDQSVLDSM 69 (282)
Q Consensus 10 ~~~l~~l~f~~~~~~~~~~~~~~a~~~ll~~ik~-~~m~~~Y~~l~~--~~-----------------~~~~D~~~~~~~ 69 (282)
..+|-|++||++|||. ++.+|++.++++||+ +.++.+|+++++ ++ +.+.|+.|+++.
T Consensus 46 ~~~i~RllfIA~~cp~---Lr~~Al~~Ai~~vk~~t~nv~ly~~l~~~~k~~~~L~~~~~~~~~~~~e~~~~D~~WvE~~ 122 (466)
T KOG0686|consen 46 RNRILRLLFIARHCPD---LRVEALRMAIDEVKEDTYNVDLYQELFNASKIQGELGRAPFKNPQLGFEGYLLDEKWVETN 122 (466)
T ss_pred HHHHHHHHHHHHhCch---HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHhcchhhcCCCCCccccccccccchHHHHHh
Confidence 4678999999999994 999999999999999 899999999999 43 367899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccC
Q 023407 70 RTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 70 ~~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d 149 (282)
..+...++++|+.+||.|++|+||||||+|+.++|+||..+|++++|+|+|.|+|||||+.+|+|+||+++|||+|+.||
T Consensus 123 ~~~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~n 202 (466)
T KOG0686|consen 123 NKKAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGN 202 (466)
T ss_pred hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhC--CCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccccc-ccccccCchhHHHHHHHHHhcc
Q 023407 150 FDLISKSIDKAKSLFEEG--GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTF-TTYELFPYDTFIFYTVLTSIIS 226 (282)
Q Consensus 150 ~~~v~~~i~kA~~~~e~g--gdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tf-t~~elis~~d~a~Y~~l~aLas 226 (282)
|.||.+|+++|++.++.. ...+...|++|+.||+.|..|+|+.||..||.+.++. .+.++++++|+++||+||||||
T Consensus 203 w~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAt 282 (466)
T KOG0686|consen 203 WGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALAT 282 (466)
T ss_pred hhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhcc
Confidence 999999999999998431 1233458999999999999999999999999998763 5889999999999999999999
Q ss_pred CChHHHHHHccCChhHHHhhcCCchHHHHHHHHhcCChhHHHHHHHHhhhhhh
Q 023407 227 LDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFGEKRSDAC 279 (282)
Q Consensus 227 l~R~eLk~kvl~~~e~~~~l~~~P~l~~ll~sfy~~~Y~~~~~~L~~~~~~~~ 279 (282)
|||.+||..|++|.+|+.|++.+|.||++|.+||+++|+.||+.|.+++|+++
T Consensus 283 fdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy~sky~~cl~~L~~~k~~ll 335 (466)
T KOG0686|consen 283 FDRQDLKLNVIKNESFKLFLELEPQLREILFKFYSSKYASCLELLREIKPRLL 335 (466)
T ss_pred CCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHhhhhHHHHHHHHHHhcccee
Confidence 99999999999999999999999999999999999999999999999999985
No 3
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-60 Score=432.38 Aligned_cols=277 Identities=30% Similarity=0.534 Sum_probs=260.0
Q ss_pred CCCCCCCCcchHHhhHhHhhcCCCCcchhhHHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCCHHHHHHHHHHH
Q 023407 1 MDSEGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESV-------LEMDQSVLDSMRTKI 73 (282)
Q Consensus 1 ~~~~~~~~p~~~l~~l~f~~~~~~~~~~~~~~a~~~ll~~ik~~~m~~~Y~~l~~~~~-------~~~D~~~~~~~~~~n 73 (282)
|++...+.|++.+.+.+|++..+...- ....|++-+...|+.++|+|+|+++|++.+ +.+|...++++-++|
T Consensus 13 ~~~~~~~vp~l~vs~~~fll~~~kl~n-~~~ka~e~l~~~i~d~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkn 91 (412)
T COG5187 13 PMDFDFQVPTLLVSDAIFLLHGTKLGN-PESKALEHLERLIIDKCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKN 91 (412)
T ss_pred cCchhccCCceehhhHHHHhcccccCC-hhhHHHHHHHHHHHHhhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhh
Confidence 456667899999999999998876543 334588999999999999999999999873 788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHH
Q 023407 74 EDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLI 153 (282)
Q Consensus 74 ~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v 153 (282)
++++++|+++|.+.++.-|+.++..++..+|+||++|||++++.+...+.....+++|.|||+.|+.||+|+++||...|
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV 171 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVV 171 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHH
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhccCChHHHH
Q 023407 154 SKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLK 233 (282)
Q Consensus 154 ~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLasl~R~eLk 233 (282)
...+++++.++|+||||+||||+|+|.|+++|+.|+|++||.+|+|++|||+|+|++||+++|.|+++||+++|+|.++|
T Consensus 172 ~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~Gl~~leR~dik 251 (412)
T COG5187 172 EESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCGLLRLERRDIK 251 (412)
T ss_pred HHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhhhheeehhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCChhHHHhhcCCch---HHHHHHHHhcCChhHHHHHHHHhhhhh
Q 023407 234 QKVVDAPEILTVIGKIPY---LSEFLNSLYDCQYKSFFSAFGEKRSDA 278 (282)
Q Consensus 234 ~kvl~~~e~~~~l~~~P~---l~~ll~sfy~~~Y~~~~~~L~~~~~~~ 278 (282)
+||+||||++.++.+... +.++++|+|.|+|+.+|..|..+.-+.
T Consensus 252 tki~dspevl~vi~~~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~ 299 (412)
T COG5187 252 TKILDSPEVLDVIGSSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNS 299 (412)
T ss_pred hhhcCCHHHHHhccchhhhhhHHHHHHHHHHhccchhhHHHHHHHHhh
Confidence 999999999999987654 568999999999999999998876544
No 4
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=100.00 E-value=2.8e-60 Score=410.97 Aligned_cols=174 Identities=42% Similarity=0.713 Sum_probs=172.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHH
Q 023407 62 DQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTL 141 (282)
Q Consensus 62 D~~~~~~~~~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~i 141 (282)
|++|+++++++|++++++||.+|++|++|+||+|||+++.++|+||+++||+++|+++|.++++|||++||+|||+|++|
T Consensus 1 D~~w~~~~~~~~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~i 80 (177)
T PF10602_consen 1 DEEWIEETKAKNAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVI 80 (177)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccccccc---ccccCchhHHHH
Q 023407 142 QLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTT---YELFPYDTFIFY 218 (282)
Q Consensus 142 rv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~---~elis~~d~a~Y 218 (282)
|||+|++||++|.++++||++++++||||+|||||+||.||++|++|+|++||++|+++++||++ +|+|||+|||+|
T Consensus 81 rv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y 160 (177)
T PF10602_consen 81 RVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIY 160 (177)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHHHHhccCChHHHHHH
Q 023407 219 TVLTSIISLDRVSLKQK 235 (282)
Q Consensus 219 ~~l~aLasl~R~eLk~k 235 (282)
||||||+||||++||+|
T Consensus 161 ~~l~aLat~~R~eLk~K 177 (177)
T PF10602_consen 161 GGLCALATLDRSELKKK 177 (177)
T ss_pred HHHHHHHhCCHHHHccC
Confidence 99999999999999976
No 5
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.32 E-value=0.025 Score=52.09 Aligned_cols=177 Identities=14% Similarity=0.189 Sum_probs=114.1
Q ss_pred HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHc----cChHHHHHHHHHHHHHHhhCC
Q 023407 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY----MDFDLISKSIDKAKSLFEEGG 168 (282)
Q Consensus 93 ~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~----~d~~~v~~~i~kA~~~~e~gg 168 (282)
..+...++..-+..|.+. +.+.|+++|.++.+..+..|..-...-...++|-.+ ||++....+..+|-.+.+..+
T Consensus 71 ~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~ 149 (282)
T PF14938_consen 71 KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG 149 (282)
T ss_dssp HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 455566677777777666 999999999999887666665555444444554444 678888999999999988766
Q ss_pred CcchhhHHHHHHHHHHhhcccHHHHHHHhhcccccccccccc--CchhHHHHHHHHHhccCChHHHHHHc----cCChhH
Q 023407 169 DWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELF--PYDTFIFYTVLTSIISLDRVSLKQKV----VDAPEI 242 (282)
Q Consensus 169 dw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~eli--s~~d~a~Y~~l~aLasl~R~eLk~kv----l~~~e~ 242 (282)
.....+....-.|-.....++|.+|.+.|-.+........+. +..+..+-++||-|+.=|-..-++.+ -..|.|
T Consensus 150 ~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 150 SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 555556555556666778899999999998876655444444 56688888999999987755444332 122333
Q ss_pred HHhhcCCchHHHHHHHHhcCChhHHHHHH
Q 023407 243 LTVIGKIPYLSEFLNSLYDCQYKSFFSAF 271 (282)
Q Consensus 243 ~~~l~~~P~l~~ll~sfy~~~Y~~~~~~L 271 (282)
..- ...--+.++|.++=+.+=..|=+.+
T Consensus 230 ~~s-~E~~~~~~l~~A~~~~D~e~f~~av 257 (282)
T PF14938_consen 230 ASS-REYKFLEDLLEAYEEGDVEAFTEAV 257 (282)
T ss_dssp TTS-HHHHHHHHHHHHHHTT-CCCHHHHC
T ss_pred CCc-HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 321 1112367777777776555444443
No 6
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.29 E-value=0.016 Score=47.81 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=81.0
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchh
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 173 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rr 173 (282)
.--..+.+.+|..+...||+++|.+.|.++.+....+.-+--..+.+.++-+..|+++...+.+++.. +..| +
T Consensus 45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-----~~~~--~ 117 (145)
T PF09976_consen 45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-----DEAF--K 117 (145)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-----Ccch--H
Confidence 36678899999999999999999999999999876666666678888999999999998888885521 2334 4
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHhhcc
Q 023407 174 NRLKVYEGLYCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 174 nrLkvy~gL~~l~~r~f~~AA~lfld~ 200 (282)
....-..|-.++..|++.+|-..|-.+
T Consensus 118 ~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 118 ALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 556667899999999999999887543
No 7
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.69 E-value=0.013 Score=42.68 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=56.4
Q ss_pred HHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCc--h--hHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Q 023407 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV--G--QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 95 eIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~--~--~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e 165 (282)
++-.++..+|..|.+.|++++|++.|.++.+.+... . ..+....++-++-...||++...++.++|-++-+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 466789999999999999999999999988775322 2 3466667777777778999999999999987654
No 8
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.44 E-value=0.043 Score=38.31 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=66.7
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
++..+|..+.+.|++++|++.+.++.+...... ...+.+..+.+..+++.....+++++-.... .+. ....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 72 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---DAYYNLAAAYYKLGKYEEALEDYEKALELDP--DNA----KAYY 72 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cch----hHHH
Confidence 467889999999999999999999887655443 4555566666666777777777766655422 111 3445
Q ss_pred HHHHHHhhcccHHHHHHHhhccc
Q 023407 179 YEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 179 y~gL~~l~~r~f~~AA~lfld~~ 201 (282)
..|...+..+++..|...|..++
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 66677778899999988876654
No 9
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.28 E-value=0.65 Score=46.79 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHH--HHHhhhhHHHHhCCHHHHHHHHHHhhc-----cccCchhHHHHHHHHHHHH
Q 023407 72 KIEDELKKLDDRIADAEENLGESEVRE--AHLAKSLFYIQIGDKEKALEQLKVTES-----KTVAVGQKMDLVFYTLQLG 144 (282)
Q Consensus 72 ~n~~~l~~Le~~lk~~~~nl~~eeIr~--a~~~la~~~~~iGd~~~A~k~y~~~~e-----~~~s~~~~id~~l~~irv~ 144 (282)
+..+-+.-++.-+...++.+|+...+- .+.+||.-|++.|++.+|..++.++.+ +.++.+..--...+++-+.
T Consensus 256 k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~ 335 (508)
T KOG1840|consen 256 KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAIL 335 (508)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 455667778888888899999966555 499999999999999999999988654 3467777777788888888
Q ss_pred HHccChHHHHHHHHHHHHHHhh--CCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 145 FFYMDFDLISKSIDKAKSLFEE--GGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 145 ~~~~d~~~v~~~i~kA~~~~e~--ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
--.+.+..+..+..+|-.++.. |.|--.-++.++=-|--...+|+|++|-+.|-.++.-
T Consensus 336 ~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 336 QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 8889999999999999888873 5555467888888898899999999999999998753
No 10
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.99 E-value=0.12 Score=39.48 Aligned_cols=104 Identities=11% Similarity=0.071 Sum_probs=77.4
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
.+..+|..+.+.|++++|.+.|.++...........+..+.+.++.+-.|++.....+..++-..-- ++.+. .....
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~--~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP-KSPKA--PDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC-CCCcc--cHHHH
Confidence 4678899999999999999999998876655555567888899999999999999999988876431 11111 12234
Q ss_pred HHHHHHhhcccHHHHHHHhhccccccc
Q 023407 179 YEGLYCMSTRNFKKAASLFLDSISTFT 205 (282)
Q Consensus 179 y~gL~~l~~r~f~~AA~lfld~~~tft 205 (282)
..|......+++.+|...|-..+..+.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 445566778999999988877765543
No 11
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.37 Score=45.97 Aligned_cols=164 Identities=18% Similarity=0.172 Sum_probs=118.2
Q ss_pred HHHhCCHHHHHHHHHHhhcc---ccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCC--CcchhhHHHHHHH
Q 023407 107 YIQIGDKEKALEQLKVTESK---TVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG--DWERKNRLKVYEG 181 (282)
Q Consensus 107 ~~~iGd~~~A~k~y~~~~e~---~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~gg--dw~rrnrLkvy~g 181 (282)
.-+++|.++|++..+++.++ |-.+..++-|...+.|+-+..||...+++.++..++.+++-+ ....++++.--..
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 44778999999999998865 455567888889999999999999999999999999998733 3334677777777
Q ss_pred HHHhhcccHHHHHHHhhccccccccccccCch--hHHHHHHHHHhccCChHHHHHHccCChhHHHhhcC-CchHHHHHHH
Q 023407 182 LYCMSTRNFKKAASLFLDSISTFTTYELFPYD--TFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGK-IPYLSEFLNS 258 (282)
Q Consensus 182 L~~l~~r~f~~AA~lfld~~~tft~~elis~~--d~a~Y~~l~aLasl~R~eLk~kvl~~~e~~~~l~~-~P~l~~ll~s 258 (282)
-|+=..|||..+=..-|--++.-+.+++-..+ |.|+--+++||+.=.=-.. -.++.-|-+.+...+ ..++.+++.+
T Consensus 165 qYyk~~~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~aALLGe~iyNf-GELL~HPilesL~gT~~eWL~dll~A 243 (380)
T KOG2908|consen 165 QYYKKIGDFASYYRHALLYLGCSDIDDLSESEKQDLAFDLSLAALLGENIYNF-GELLAHPILESLKGTNREWLKDLLIA 243 (380)
T ss_pred HHHHHHHhHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhccccccH-HHHHhhHHHHHhcCCcHHHHHHHHHH
Confidence 78888899887655544444433344544455 8888889999876322112 123444544444442 3679999999
Q ss_pred HhcCChhHHHHHH
Q 023407 259 LYDCQYKSFFSAF 271 (282)
Q Consensus 259 fy~~~Y~~~~~~L 271 (282)
|-.++...|.+.-
T Consensus 244 fn~Gdl~~f~~l~ 256 (380)
T KOG2908|consen 244 FNSGDLKRFESLK 256 (380)
T ss_pred hccCCHHHHHHHH
Confidence 9999998887643
No 12
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.73 E-value=0.22 Score=41.78 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=68.1
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|..|...|+.++|.+.|.++.+...... +...++..+.+..|++....++..++-........ ...
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~ 137 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG---DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP----ARS 137 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc----hHH
Confidence 35677788888888888888888888887654332 45556666667778888888888887654321111 222
Q ss_pred HHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
....|......+++.+|...|-.++..
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 138 LENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 233466777888888888888777653
No 13
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.67 E-value=0.26 Score=40.09 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=80.5
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
++..+|.-|-..|+-++|+..|+++.+.-.+..+.....+.+-..--..|..+.....++++-. ...+-+-...+++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~---~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE---EFPDDELNAALRV 79 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCccccHHHHH
Confidence 5677888999999999999999999997766667777776666666667787777777766643 3234444677889
Q ss_pred HHHHHHhhcccHHHHHHHhhcccc
Q 023407 179 YEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 179 y~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
..++.+...|..++|.+.|+.++.
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999865
No 14
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.66 E-value=0.064 Score=37.95 Aligned_cols=63 Identities=21% Similarity=0.173 Sum_probs=51.9
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYM-DFDLISKSIDKAKSL 163 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~-d~~~v~~~i~kA~~~ 163 (282)
..+..+|..+.+.|++++|++.|.++.+++.+. .+..+++-.+-...| ++.....+.++|-++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 467889999999999999999999999987543 446677777777788 688888888887654
No 15
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.63 E-value=0.34 Score=44.51 Aligned_cols=175 Identities=11% Similarity=0.062 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHh-CCHHHHHHHHHHhhccccCc---hhHHHHHHHHHHHHHHccCh
Q 023407 75 DELKKLDDRIADAEENLGESEVREAHLAKSLFYIQI-GDKEKALEQLKVTESKTVAV---GQKMDLVFYTLQLGFFYMDF 150 (282)
Q Consensus 75 ~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~i-Gd~~~A~k~y~~~~e~~~s~---~~~id~~l~~irv~~~~~d~ 150 (282)
+-++-++.-+.-|.++.--...-+.+..+|+.|-+. ||.++|+++|.++.++-... ....++...+..+.+-.|++
T Consensus 92 ~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 92 EAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 335556666677776666677788899999999999 99999999999998875444 44456677888888889999
Q ss_pred HHHHHHHHHHHHHH-hhC-CCcchhhHHHHHHHHHHhhcccHHHHHHHhhc---cccccccccccCchhHHHHHHHHHhc
Q 023407 151 DLISKSIDKAKSLF-EEG-GDWERKNRLKVYEGLYCMSTRNFKKAASLFLD---SISTFTTYELFPYDTFIFYTVLTSII 225 (282)
Q Consensus 151 ~~v~~~i~kA~~~~-e~g-gdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld---~~~tft~~elis~~d~a~Y~~l~aLa 225 (282)
.......++.-... +.. ..|.. .+.-...+|-+|..+|.-.|-+.|=+ ..|+|.. |-+=-....+|-|.=
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~-~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~----s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSA-KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS----SREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHH-HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT----SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC----cHHHHHHHHHHHHHH
Confidence 99988888775543 221 23432 33445568999999999777666555 3466752 233334555666666
Q ss_pred cCChHHHHHHccCChhHHHhhcCCchHHHHHH
Q 023407 226 SLDRVSLKQKVVDAPEILTVIGKIPYLSEFLN 257 (282)
Q Consensus 226 sl~R~eLk~kvl~~~e~~~~l~~~P~l~~ll~ 257 (282)
.-|-..+.+-|- ++-++-...|+...++.
T Consensus 247 ~~D~e~f~~av~---~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 247 EGDVEAFTEAVA---EYDSISRLDNWKTKMLL 275 (282)
T ss_dssp TT-CCCHHHHCH---HHTTSS---HHHHHHHH
T ss_pred hCCHHHHHHHHH---HHcccCccHHHHHHHHH
Confidence 666666654332 24444455666655543
No 16
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.57 E-value=0.014 Score=36.99 Aligned_cols=33 Identities=27% Similarity=0.162 Sum_probs=26.5
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCch
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG 131 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~ 131 (282)
++..+|+.|.+.||+++|+++|.++..-+.+++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 477899999999999999999999775554444
No 17
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=2.5 Score=42.51 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=93.2
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHH--HHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKM--DLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~i--d~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
.-...|.=+.+-||+.+|++.|+++...-.. .++. +-.++.++++ ++..+.+- |+..++...+| .|-
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~----~~~~aL~D---a~~~ieL~p~~---~kg 428 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLG----EYPEALKD---AKKCIELDPNF---IKA 428 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHh----hHHHHHHH---HHHHHhcCchH---HHH
Confidence 3445699999999999999999998876532 2222 2244555544 44444444 56666543333 445
Q ss_pred HHHHHHHHhhcccHHHHHHHhhccccccccccccCchhH--HHHHHHHHhc---cCChHHHHHHccCChhHHHhhcCCch
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTF--IFYTVLTSII---SLDRVSLKQKVVDAPEILTVIGKIPY 251 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~--a~Y~~l~aLa---sl~R~eLk~kvl~~~e~~~~l~~~P~ 251 (282)
-...|..+-..++|..|.+.|-..+--- +++- +---.=|..+ ..+-.+++.++..+||++++|.. |.
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~d-------p~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~~dpev~~il~d-~~ 500 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELD-------PSNAEAIDGYRRCVEAQRGDETPEETKRRAMADPEVQAILQD-PA 500 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-------chhHHHHHHHHHHHHHhhcCCCHHHHHHhhccCHHHHHHHcC-HH
Confidence 5666999999999999999988875321 2211 1111123333 55667889999999999998654 88
Q ss_pred HHHHHHHHhc
Q 023407 252 LSEFLNSLYD 261 (282)
Q Consensus 252 l~~ll~sfy~ 261 (282)
++.++..+..
T Consensus 501 m~~~l~q~q~ 510 (539)
T KOG0548|consen 501 MRQILEQMQE 510 (539)
T ss_pred HHHHHHHHHh
Confidence 8766655443
No 18
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.94 E-value=0.5 Score=39.60 Aligned_cols=109 Identities=7% Similarity=-0.088 Sum_probs=73.4
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchh
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 173 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rr 173 (282)
..-...+..+|..+...|+.++|+..|.++......+........++-.+....|++.....+..+|-.+...-+ ....
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~-~~~~ 110 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP-QALN 110 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHH
Confidence 334667889999999999999999999999876444333445667777777778999999999999887633211 1122
Q ss_pred hHHHHHH--HHHHhhcccHHHHHHHhhccccc
Q 023407 174 NRLKVYE--GLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 174 nrLkvy~--gL~~l~~r~f~~AA~lfld~~~t 203 (282)
+.-.+|. |-..+..|+|..|-..|-++...
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 3333333 44445778877666665555443
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=94.79 E-value=5.4 Score=40.57 Aligned_cols=102 Identities=17% Similarity=0.111 Sum_probs=76.4
Q ss_pred CHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcc
Q 023407 92 GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 171 (282)
Q Consensus 92 ~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~ 171 (282)
.+......+..+|..|.+.|+++.|.+.|.++.+..... .+..+.+.++.+..|++....+.++++-... ..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~ 191 (899)
T TIGR02917 120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS---LYAKLGLAQLALAENRFDEARALIDEVLTAD-----PG 191 (899)
T ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC
Confidence 445667788899999999999999999999998765433 4577888888889999999999988875531 11
Q ss_pred hhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 172 RKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 172 rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
........|......|++.+|...|-.++.
T Consensus 192 -~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 221 (899)
T TIGR02917 192 -NVDALLLKGDLLLSLGNIELALAAYRKAIA 221 (899)
T ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 123345556667778888888887776643
No 20
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.42 E-value=0.47 Score=37.65 Aligned_cols=96 Identities=13% Similarity=-0.003 Sum_probs=71.5
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..+.+.|+.++|...|.++.+..... .++...+-.+.+-.|+++.....+.++-..-. .+ ....
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~----~~~~ 88 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAALDP--DD----PRPY 88 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC----hHHH
Confidence 457789999999999999999999988755432 35555556666667888888888877655421 22 3344
Q ss_pred HHHHHHHhhcccHHHHHHHhhcccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
...|...+..|++..|...|-.++.
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6678888899999999998877654
No 21
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=2.1 Score=40.45 Aligned_cols=104 Identities=19% Similarity=0.318 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhhcccHHHHHHHhhccccccccccc-cCchhHHHHHHHHHhccCChHHHHHHccCChhHHHhhcC--Cch
Q 023407 175 RLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYEL-FPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGK--IPY 251 (282)
Q Consensus 175 rLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~el-is~~d~a~Y~~l~aLasl~R~eLk~kvl~~~e~~~~l~~--~P~ 251 (282)
.|-.-.|++...-|||+.|..-|.++.-.||.-.. .-.=....|..|+-+.-=.|.|+| .|+.+-.-+..... ...
T Consensus 207 ~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk-~vl~~K~t~~~y~~r~I~a 285 (421)
T COG5159 207 QLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVK-AVLRNKNTLKHYDDRMIRA 285 (421)
T ss_pred HHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHH-HHHccchhHhhhhhhhHHH
Confidence 33344488888999999999999999888874221 112234578888888877788886 57777555554433 345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhhhh
Q 023407 252 LSEFLNSLYDCQYKSFFSAFGEKRSDAC 279 (282)
Q Consensus 252 l~~ll~sfy~~~Y~~~~~~L~~~~~~~~ 279 (282)
++..-++|=+..-.+|-..|+.+++.+.
T Consensus 286 m~avaea~~NRsL~df~~aL~qY~~el~ 313 (421)
T COG5159 286 MLAVAEAFGNRSLKDFSDALAQYSDELH 313 (421)
T ss_pred HHHHHHHhCCCcHhhHHHHHHHhhHHhc
Confidence 7777788989999999999998887764
No 22
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.04 E-value=0.28 Score=41.42 Aligned_cols=67 Identities=10% Similarity=-0.032 Sum_probs=55.5
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
..++..+|..|.+.|+.++|+.+|.++..............+++..+....|++.....+..+|-+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4468899999999999999999999988765444445667788888888889999999999888775
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=93.92 E-value=5.5 Score=37.22 Aligned_cols=57 Identities=12% Similarity=-0.032 Sum_probs=25.3
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSID 158 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~ 158 (282)
.+..+|..|.+.|+.+.|.+.|.++.+... ........++++....|++........
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGD---FAEGALQQLLEIYQQEKDWQKAIDVAE 165 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 344555555555555555555555544311 122333444444444444444443333
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=93.62 E-value=0.87 Score=42.68 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=26.0
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAK 161 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~ 161 (282)
+..+|..+.+.|+.++|.+.|.++.+..... .+..+.+.++....|++......+.++.
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQC---VRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555555555555555555544332111 1233334444444455554444444443
No 25
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=93.56 E-value=1.2 Score=37.27 Aligned_cols=99 Identities=15% Similarity=0.065 Sum_probs=74.6
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..+...|+.++|.+.|.++.+... .....+....+..+....|++.....++.++-.... . .....
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~ 172 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--Q----RPESL 172 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--C----ChHHH
Confidence 4678889999999999999999999886432 223445667777788888999999999988876532 1 12334
Q ss_pred HHHHHHHhhcccHHHHHHHhhccccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
...|......|+|.+|...|-.++..
T Consensus 173 ~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 173 LELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677778899999999888777553
No 26
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=93.43 E-value=3.2 Score=41.99 Aligned_cols=128 Identities=19% Similarity=0.188 Sum_probs=95.9
Q ss_pred CHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcc
Q 023407 92 GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 171 (282)
Q Consensus 92 ~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~ 171 (282)
.....-.++.-+|.||-.+|++++|++...++.+.+.+. +|..+...||--..||.......++.|.++-- .|
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~--~D-- 261 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL---VELYMTKARILKHAGDLKEAAEAMDEARELDL--AD-- 261 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh--hh--
Confidence 345667889999999999999999999999999988664 89999999999999999999999999999742 33
Q ss_pred hhhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCch-----hHHHHHHHHHhccCChHHH
Q 023407 172 RKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYD-----TFIFYTVLTSIISLDRVSL 232 (282)
Q Consensus 172 rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~-----d~a~Y~~l~aLasl~R~eL 232 (282)
|- +..=.+=|.|..++.++|-+.+ +-||-.+.=+.+ +.++|-+=||-+-+-+.+.
T Consensus 262 Ry--iNsK~aKy~LRa~~~e~A~~~~----~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 262 RY--INSKCAKYLLRAGRIEEAEKTA----SLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred HH--HHHHHHHHHHHCCCHHHHHHHH----HhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 32 2233456788899999887654 335433332223 4577777777766554443
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.34 E-value=2.1 Score=43.48 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=27.6
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAK 161 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~ 161 (282)
++..+|..+...|++++|+..|.++.+.... -.+....+-.+.+..|++.....+.++|-
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSE---DPDIYYHRAQLHFIKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555555555555555554433211 12344444444444455555544444443
No 28
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.32 E-value=0.59 Score=34.54 Aligned_cols=80 Identities=9% Similarity=0.053 Sum_probs=53.4
Q ss_pred hCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchh-hHHHHHHHHHHhhcc
Q 023407 110 IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK-NRLKVYEGLYCMSTR 188 (282)
Q Consensus 110 iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rr-nrLkvy~gL~~l~~r 188 (282)
-|++++|+..|.+..+...+.. .-..++.+.++-+-.|++..+...+.+ .. ++.+ .......|-.++..|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-------~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LK-------LDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-------HHHCHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-------CCCCCHHHHHHHHHHHHHhC
Confidence 4788888888888887655422 555677778888888888888777777 11 1111 244445588888888
Q ss_pred cHHHHHHHhh
Q 023407 189 NFKKAASLFL 198 (282)
Q Consensus 189 ~f~~AA~lfl 198 (282)
+|.+|.+.|-
T Consensus 73 ~y~eAi~~l~ 82 (84)
T PF12895_consen 73 KYEEAIKALE 82 (84)
T ss_dssp -HHHHHHHHH
T ss_pred CHHHHHHHHh
Confidence 8888887764
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.31 E-value=2.7 Score=42.70 Aligned_cols=100 Identities=17% Similarity=0.079 Sum_probs=72.1
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchh
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 173 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rr 173 (282)
.....++..+|.+|...|+.++|++.|.++.+.... ..+.++.+..+....|++.....++++|-..- ++ .
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~-~ 398 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR---VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-----SE-D 398 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC-C
Confidence 455567999999999999999999999999875443 23455666677778899999999999885541 11 1
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 174 NRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 174 nrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.......|..+...|+|.+|...|-.++.
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23344556666677777777777766643
No 30
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=3.3 Score=38.76 Aligned_cols=158 Identities=11% Similarity=0.113 Sum_probs=98.5
Q ss_pred cCCHHHH-----HHHHHhcCCCCCH-HHHHHHHHHHHHHHHHHHHHHH-HHHHhhCHHHHHHHHHhhhhHHHHhCCHHHH
Q 023407 44 HDMASFY-----ETLVAESVLEMDQ-SVLDSMRTKIEDELKKLDDRIA-DAEENLGESEVREAHLAKSLFYIQIGDKEKA 116 (282)
Q Consensus 44 ~~m~~~Y-----~~l~~~~~~~~D~-~~~~~~~~~n~~~l~~Le~~lk-~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A 116 (282)
+.|+||= ..+-..+|.|... .-+..++.-..+.+..++.... +---|+.+--.-..+.-++.++.-.|.+.-.
T Consensus 117 GSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS 196 (366)
T KOG2796|consen 117 GSMVPFSMRILHAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLS 196 (366)
T ss_pred CccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhh
Confidence 5566653 3333334555543 4455566666666655554432 1111222211122466778889999999999
Q ss_pred HHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHH--HHHHHhhcccHHHHH
Q 023407 117 LEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY--EGLYCMSTRNFKKAA 194 (282)
Q Consensus 117 ~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy--~gL~~l~~r~f~~AA 194 (282)
+.+|.+.++|-.. .+-.+.-.+.||++-+||....++|.++.+..-.+ =-+-.++.-|- .++-.+.+.||..|-
T Consensus 197 ~d~~~~vi~~~~e--~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k--L~~~q~~~~V~~n~a~i~lg~nn~a~a~ 272 (366)
T KOG2796|consen 197 VDAYHSVIKYYPE--QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK--LDGLQGKIMVLMNSAFLHLGQNNFAEAH 272 (366)
T ss_pred HHHHHHHHHhCCc--ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh--hhccchhHHHHhhhhhheecccchHHHH
Confidence 9999999986533 34455678899999999999999999866543211 01112333333 345667889999999
Q ss_pred HHhhccccccc
Q 023407 195 SLFLDSISTFT 205 (282)
Q Consensus 195 ~lfld~~~tft 205 (282)
.-|-.++-+-.
T Consensus 273 r~~~~i~~~D~ 283 (366)
T KOG2796|consen 273 RFFTEILRMDP 283 (366)
T ss_pred HHHhhccccCC
Confidence 99988876654
No 31
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=93.14 E-value=1.7 Score=33.02 Aligned_cols=68 Identities=12% Similarity=-0.048 Sum_probs=55.8
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
...++..+|..+.+.|+.+.|++.|.++...........+..+...++-...+++.....++.++...
T Consensus 38 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 38 APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 35678889999999999999999999988765554455677788888888889999998888887665
No 32
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.14 E-value=0.74 Score=32.04 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=48.9
Q ss_pred HhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 023407 101 LAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (282)
Q Consensus 101 ~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~ 162 (282)
+.+|..+.+.|++++|.++|.++.+.- ..-.+..+.+-++-...|++.....+..++-.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD---PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367899999999999999999988655 33778888888999999999999888888754
No 33
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.11 E-value=1.1 Score=42.72 Aligned_cols=149 Identities=17% Similarity=0.052 Sum_probs=105.1
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhh----ccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCC
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTE----SKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGD 169 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~----e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggd 169 (282)
|-+.-....||..|-+-|++..|-.+..-+- .+-...+.++..|+.+-|+.+.-+|......|++||--+...-.+
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 4455567789999999999999988876533 233567889999999999999999999999999999888766566
Q ss_pred cchhhHHHHHHHHHHhhcccHHHHHHHhhcccccc--ccccccCchhHHHHHHHHHhccCChHHHHHHccCChhH
Q 023407 170 WERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTF--TTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEI 242 (282)
Q Consensus 170 w~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tf--t~~elis~~d~a~Y~~l~aLasl~R~eLk~kvl~~~e~ 242 (282)
.+..--+|++.+=.+=..|+|-+||...-....+= .-.+.++.=--|.-+++.|-++--|+.+-..+...+..
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki~~e~~~~~aL~~a~~CtlLA~~gpqrsr~Latlfkder~ 254 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKIVDESERLEALKKALQCTLLASAGPQRSRMLATLFKDERC 254 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHhheeecCCChHHHHHHHHHhcCccc
Confidence 66677889999988888999999999988654321 11111111122333334444555565555444444433
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=93.09 E-value=0.82 Score=41.40 Aligned_cols=119 Identities=14% Similarity=0.093 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHH
Q 023407 75 DELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLIS 154 (282)
Q Consensus 75 ~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~ 154 (282)
...++++.-++.+...-.-..=-..+..+|.++.+.|+.++|+++|.++.+.-..... +...++.+-+..|+...+.
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---~~~~l~~~li~~~~~~~~~ 200 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---ARNALAWLLIDMGDYDEAR 200 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---HHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHCCChHHHH
Confidence 4455556566555432111122345788999999999999999999999986655444 3445666777888988877
Q ss_pred HHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 155 KSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 155 ~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
..+.+...... .|. .+-..-|...+..|++++|...|-....
T Consensus 201 ~~l~~~~~~~~--~~~----~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 201 EALKRLLKAAP--DDP----DLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH-H--TSC----CHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCc--CHH----HHHHHHHHHhcccccccccccccccccc
Confidence 88877777653 232 2334558888899999999999988765
No 35
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=93.08 E-value=5.1 Score=40.70 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=54.9
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh-----------
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE----------- 166 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~----------- 166 (282)
..+..+|..|.+.|+.++|+++|.++.+..... ......+..+....|++........++-..-..
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS---ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345556666666666666666666655432211 123334444444455555555555544322100
Q ss_pred ---CCCcc--------------hhhHHHHHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 167 ---GGDWE--------------RKNRLKVYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 167 ---ggdw~--------------rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
.|+|+ .........|......|+|++|...|-.++...
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 11111 112233445667778899999999888876544
No 36
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.85 E-value=0.19 Score=30.57 Aligned_cols=30 Identities=33% Similarity=0.351 Sum_probs=26.9
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccc
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKT 127 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~ 127 (282)
.++..+|..|.+.||.++|.++|.++.+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467889999999999999999999988754
No 37
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.56 E-value=0.25 Score=29.76 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=26.0
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhcccc
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTV 128 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~ 128 (282)
.++..+|..|.+.|++++|+++|.++...+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4678899999999999999999999886543
No 38
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=92.42 E-value=6.9 Score=34.09 Aligned_cols=130 Identities=11% Similarity=0.101 Sum_probs=75.3
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHc--------cChHHHHHHHHHHHHHHh
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY--------MDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~--------~d~~~v~~~i~kA~~~~e 165 (282)
.....++..+|..|.+.|+.+.|+..|.++.+.........+..+.+-.+-+.. |++....+..+++ ++
T Consensus 67 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~---~~ 143 (235)
T TIGR03302 67 PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQEL---IR 143 (235)
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH---HH
Confidence 345678999999999999999999999999877765555433222221111111 3344444444433 33
Q ss_pred hCCCcch----hhHH----------HHHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhccCCh
Q 023407 166 EGGDWER----KNRL----------KVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDR 229 (282)
Q Consensus 166 ~ggdw~r----rnrL----------kvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLasl~R 229 (282)
...+... ..++ ....|...+..|++.+|...|-..+..++-. ++..-+.+....+...+.+
T Consensus 144 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 144 RYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT---PATEEALARLVEAYLKLGL 218 (235)
T ss_pred HCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC---cchHHHHHHHHHHHHHcCC
Confidence 2222211 1111 1245667788999999999988887766532 2233344444444444443
No 39
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.42 E-value=1.8 Score=40.59 Aligned_cols=171 Identities=16% Similarity=0.178 Sum_probs=120.3
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCc---------hhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCc
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAV---------GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDW 170 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~---------~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw 170 (282)
...+|..|..+|++..-.|...+...-|-+- .+.++++---|.+.-...|...++..-++|-.+-..-..+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 4578999999999999999888888777543 3556666666777777778888877777775554322222
Q ss_pred chhhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCch--hHHHHHHHHHhcc------CChHHHHHHccCChhH
Q 023407 171 ERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYD--TFIFYTVLTSIIS------LDRVSLKQKVVDAPEI 242 (282)
Q Consensus 171 ~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~--d~a~Y~~l~aLas------l~R~eLk~kvl~~~e~ 242 (282)
---.-++-+.|=-+|..|.|.+|..-|.++.-.+. |-=||. ...-|-||+.|+- ||-.|-| ---+.||+
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD--EsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK-PyKNdPEI 304 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD--ESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK-PYKNDPEI 304 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHhccc--ccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC-CCCCCHHH
Confidence 22344455667778899999999999999866553 333333 5678888888752 4444432 22344555
Q ss_pred HHhhcCCchHHHHHHHHhcCChhHHHHHHHHhhhhhhc
Q 023407 243 LTVIGKIPYLSEFLNSLYDCQYKSFFSAFGEKRSDACA 280 (282)
Q Consensus 243 ~~~l~~~P~l~~ll~sfy~~~Y~~~~~~L~~~~~~~~~ 280 (282)
++ +.+++.+|-+.+-..|-.+|...+++.++
T Consensus 305 lA-------MTnlv~aYQ~NdI~eFE~Il~~~~~~IM~ 335 (440)
T KOG1464|consen 305 LA-------MTNLVAAYQNNDIIEFERILKSNRSNIMD 335 (440)
T ss_pred HH-------HHHHHHHHhcccHHHHHHHHHhhhccccc
Confidence 54 77899999999999999999887776554
No 40
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.92 E-value=1.3 Score=30.44 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=47.8
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~ 162 (282)
.++..+|..+...|+.+.|.+.|.++.+...... ++.+.+..+....|++.....++.++..
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA---KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch---hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 6788899999999999999999999887654433 5666666777777888777777766643
No 41
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.85 E-value=2.2 Score=43.27 Aligned_cols=135 Identities=14% Similarity=0.162 Sum_probs=88.1
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
.+.-||-.|+-.|+++.|+.||..++-.-.+.... +=|+|--+-|-..-..-|+-=...++--...- |.| -
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l------WNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV-R~R--y 502 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL------WNRLGATLANGNRSEEAISAYNRALQLQPGYV-RVR--Y 502 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH------HHHhhHHhcCCcccHHHHHHHHHHHhcCCCee-eee--h
Confidence 35567999999999999999999988655555433 44777665444333333332233332222222 222 3
Q ss_pred HHHHHHhhcccHHHHHHHhhccccc----cccccccCchhHHHHHHHHHhccCChHHHHHHccCChhH
Q 023407 179 YEGLYCMSTRNFKKAASLFLDSIST----FTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEI 242 (282)
Q Consensus 179 y~gL~~l~~r~f~~AA~lfld~~~t----ft~~elis~~d~a~Y~~l~aLasl~R~eLk~kvl~~~e~ 242 (282)
=-|+.+|-.|.|++|++.||.+++= -+..+..-.++=++=+.=.+|.++.|+||-..+..+-..
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~~~nl 570 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAPSRNL 570 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhccccCH
Confidence 3599999999999999999999752 233444333555555555889999999965666655433
No 42
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.62 E-value=0.38 Score=29.26 Aligned_cols=30 Identities=33% Similarity=0.318 Sum_probs=25.8
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccc
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKT 127 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~ 127 (282)
.++..+|..|...|+.+.|+++|.++.+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 478899999999999999999999987644
No 43
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.46 E-value=1.9 Score=41.35 Aligned_cols=172 Identities=15% Similarity=0.151 Sum_probs=112.5
Q ss_pred hhhhHHHHhCCHHHHHHHHHH-hhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh-------h-CCCcch
Q 023407 102 AKSLFYIQIGDKEKALEQLKV-TESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE-------E-GGDWER 172 (282)
Q Consensus 102 ~la~~~~~iGd~~~A~k~y~~-~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e-------~-ggdw~r 172 (282)
.+...|.+.|++.+|+..-.. .+|. .++|=-..+|.|.+.-.---+-.+++.||+..+- . -+-+-.
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rEl-----KKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPql 207 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLREL-----KKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQL 207 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH-----HhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHH
Confidence 467788899999999887654 2221 1223223344444444444444445555554442 1 112223
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHhhccccccccccc-cCchhHHHHHHHHHhccCChHHHHHHccCChhHHHhh-cCCc
Q 023407 173 KNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYEL-FPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVI-GKIP 250 (282)
Q Consensus 173 rnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~el-is~~d~a~Y~~l~aLasl~R~eLk~kvl~~~e~~~~l-~~~P 250 (282)
..-+---.|+.+-.-|||++|-.-|.++.-.|++-.- +..-.-.-|..||-+.-=.+.+++ .++.+-..+..- +..-
T Consensus 208 Qa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~-~lls~K~~l~y~g~~i~ 286 (411)
T KOG1463|consen 208 QATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVA-ALLSAKLALKYAGRDID 286 (411)
T ss_pred HHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHH-HHHhhHHHHhccCcchH
Confidence 3445555688888889999999999999888875443 455566789999998877777775 567665555521 1233
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHhhhhhh
Q 023407 251 YLSEFLNSLYDCQYKSFFSAFGEKRSDAC 279 (282)
Q Consensus 251 ~l~~ll~sfy~~~Y~~~~~~L~~~~~~~~ 279 (282)
.++..-.+|-+..-+.|-..|.++++.+.
T Consensus 287 AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 287 AMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 47777889999999999999998887664
No 44
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=91.35 E-value=5.4 Score=34.79 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHc-cC--h
Q 023407 74 EDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY-MD--F 150 (282)
Q Consensus 74 ~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~-~d--~ 150 (282)
++.+..|+..++. |-.. -.+|..+|..|...|+.++|+.+|.++...-.. ..++.+..-.+-++. |+ .
T Consensus 56 ~~~i~~l~~~L~~---~P~~---~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 56 EAQLQALQDKIRA---NPQN---SEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred HHHHHHHHHHHHH---CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCCCc
Confidence 4444555555542 2222 348999999999999999999999998876543 344445554443223 44 3
Q ss_pred HHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 151 DLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 151 ~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
......+++|-..-- .+ .......|...+..|+|++|...+-.++.
T Consensus 127 ~~A~~~l~~al~~dP--~~----~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 127 PQTREMIDKALALDA--NE----VTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHHHHhCC--CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666655431 22 23446778899999999999998877744
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=90.91 E-value=7.5 Score=35.89 Aligned_cols=95 Identities=11% Similarity=-0.011 Sum_probs=53.7
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-.++..+|..|...|+++.|+.+|.++.+.-.... ...+++-.+-+..|++......+.++-..- .++..+
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~--- 168 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYR--- 168 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHH---
Confidence 35677777777788888888877777776543332 233444444455677777777777665431 121111
Q ss_pred HHHHHHHHhhcccHHHHHHHhhccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
..+..+ ....+++.+|...|-...
T Consensus 169 ~~~~~l-~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 169 ALWLYL-AESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHH-HHccCCHHHHHHHHHHHH
Confidence 111112 223456777777775443
No 46
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=90.88 E-value=2.9 Score=39.89 Aligned_cols=94 Identities=15% Similarity=0.045 Sum_probs=61.9
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 179 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy 179 (282)
+...|.-.+.-|+++.|++.|.++.....+. .+..++.-.+.+..|++......+.+|-.+- .+ .......
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---P~---~~~a~~~ 75 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---AELYADRAQANIKLGNFTEAVADANKAIELD---PS---LAKAYLR 75 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cC---CHHHHHH
Confidence 3455777778888888888888877654433 2445666666666788887777777775542 11 1222334
Q ss_pred HHHHHhhcccHHHHHHHhhcccc
Q 023407 180 EGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 180 ~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.|..++..|+|..|...|-.++.
T Consensus 76 lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 76 KGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 57777778888888888766653
No 47
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.73 E-value=6.3 Score=34.76 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHH
Q 023407 63 QSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQ 142 (282)
Q Consensus 63 ~~~~~~~~~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~ir 142 (282)
+.+...++-.++.+-++-=.-+++.++..-..-=.-+.+.-|-...+-||...|++.|..+-.-+..|.---| +.-+|
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd--~ARlr 137 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRD--LARLR 137 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhH--HHHHH
Confidence 4556666666666666655666666655444444556777888899999999999999998776766655556 45678
Q ss_pred HHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 143 LGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 143 v~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
-++.+-|......-.++++.+--. ++.- |.--+=+.||+....|+|..|.+.|..+..+-
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d-~n~m-R~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGD-GNPM-RHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCC-CChh-HHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 888888887777777888877532 2222 33334456899999999999999999876643
No 48
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=3.8 Score=38.32 Aligned_cols=119 Identities=14% Similarity=0.211 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHH
Q 023407 73 IEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDL 152 (282)
Q Consensus 73 n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~ 152 (282)
.++-+.+|+..|. .|=++ -.+|.-||..|...|+...|+.+|.++..- .|...|+.+..-++=++..|-..
T Consensus 138 ~~~l~a~Le~~L~---~nP~d---~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~~~~g~aeaL~~~a~~~~ 208 (287)
T COG4235 138 MEALIARLETHLQ---QNPGD---AEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPEILLGLAEALYYQAGQQM 208 (287)
T ss_pred HHHHHHHHHHHHH---hCCCC---chhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 3444455555553 56665 347888999999999999999999998854 45567788888888888776544
Q ss_pred HHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHH---hhccccc
Q 023407 153 ISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASL---FLDSIST 203 (282)
Q Consensus 153 v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~l---fld~~~t 203 (282)
-.+--+-.++.+. .|.. --|-.-|.|...+.+|+|++|+.. +++++|.
T Consensus 209 ta~a~~ll~~al~--~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 209 TAKARALLRQALA--LDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred cHHHHHHHHHHHh--cCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 3333333333332 2322 123447889999999999998864 5666554
No 49
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.55 E-value=0.44 Score=29.84 Aligned_cols=31 Identities=26% Similarity=0.112 Sum_probs=26.5
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccc
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKT 127 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~ 127 (282)
..++..+|..|...|++++|.+.+.++.+.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578899999999999999999999987655
No 50
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=90.15 E-value=18 Score=34.73 Aligned_cols=136 Identities=13% Similarity=0.171 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Q 023407 30 KVGLKGEVFSMVKAHDMASFYETLVAESVL--EMDQSVLDSMRTKIEDELKKLDDRIADAE------------------- 88 (282)
Q Consensus 30 ~~~a~~~ll~~ik~~~m~~~Y~~l~~~~~~--~~D~~~~~~~~~~n~~~l~~Le~~lk~~~------------------- 88 (282)
..+.++.-++.+++++|+.|=-.+.+.+.. +.-.++.+ -+...-+++++|+++....-
T Consensus 34 ~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p~a~~e-kr~~Vla~lkeLe~ev~piv~~le~Pd~~~~~~~~k~~~ 112 (432)
T KOG2758|consen 34 EKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMPNALVE-KRTEVLAELKELEEEVAPIVKVLENPDLIAALRSDKDRV 112 (432)
T ss_pred HHHHHHHHHHHHcccchHHHHHHHHhcccccccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhhhhHH
Confidence 467888899999999999887776665532 22223333 23344556666666543211
Q ss_pred --------HhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchh-HHHHHHHHHHHHHHccChHHHHHHHHH
Q 023407 89 --------ENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ-KMDLVFYTLQLGFFYMDFDLISKSIDK 159 (282)
Q Consensus 89 --------~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~-~id~~l~~irv~~~~~d~~~v~~~i~k 159 (282)
.-.+.-|--++....|.|.+.+|++..|-.+.=--|-.|..+.. -+...-..+---|...||+....-+.|
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~r 192 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTR 192 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 11123455567888999999999999999887777777766665 677777788888889999999999999
Q ss_pred HHHHHhh
Q 023407 160 AKSLFEE 166 (282)
Q Consensus 160 A~~~~e~ 166 (282)
.+..++.
T Consensus 193 Lre~IDs 199 (432)
T KOG2758|consen 193 LREYIDS 199 (432)
T ss_pred HHHHHcc
Confidence 9999986
No 51
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=89.89 E-value=16 Score=33.68 Aligned_cols=141 Identities=18% Similarity=0.124 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCH----HHH-HHHHHhhhhHHHHhCCHHHHHHHHHHhhcccc---Cch--
Q 023407 62 DQSVLDSMRTKIEDELKKLDDRIADAEENLGE----SEV-REAHLAKSLFYIQIGDKEKALEQLKVTESKTV---AVG-- 131 (282)
Q Consensus 62 D~~~~~~~~~~n~~~l~~Le~~lk~~~~nl~~----eeI-r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~---s~~-- 131 (282)
+..|.--+-...-.+..+++.-+.-++..+.. ... -..+..+|.++...|+.++|++.|.++..--. ...
T Consensus 146 ~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~ 225 (355)
T cd05804 146 DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDL 225 (355)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHH
Confidence 33444444444444455555544444433221 122 23466899999999999999999998652111 000
Q ss_pred -------------------hHHHHH-----------------HHHHHHHHHccChHHHHHHHHHHHHHHhh---CCCcch
Q 023407 132 -------------------QKMDLV-----------------FYTLQLGFFYMDFDLISKSIDKAKSLFEE---GGDWER 172 (282)
Q Consensus 132 -------------------~~id~~-----------------l~~irv~~~~~d~~~v~~~i~kA~~~~e~---ggdw~r 172 (282)
...+.. ++..|+.+-.|++..+..-++..+...+. .+...+
T Consensus 226 ~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 305 (355)
T cd05804 226 LDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPAR 305 (355)
T ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHH
Confidence 111000 13344445555566666666666555554 333445
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 173 KNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 173 rnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
...+.+..++.....|++.+|.++|..++.
T Consensus 306 ~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 306 DVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 688889999999999999999999888754
No 52
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=89.75 E-value=1.7 Score=31.20 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCHH--HHHHHHHhhhhHHHHhCCHHHHHHHHHHhhc
Q 023407 72 KIEDELKKLDDRIADAEENLGES--EVREAHLAKSLFYIQIGDKEKALEQLKVTES 125 (282)
Q Consensus 72 ~n~~~l~~Le~~lk~~~~nl~~e--eIr~a~~~la~~~~~iGd~~~A~k~y~~~~e 125 (282)
+.++-++-++.-++- .+..|+. .+-.++..+|..|...||.++|++.|.++.+
T Consensus 20 ~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 20 RYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp -HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445555555555 4555543 4688899999999999999999999999875
No 53
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=89.44 E-value=1.9 Score=39.64 Aligned_cols=98 Identities=10% Similarity=0.068 Sum_probs=54.2
Q ss_pred hHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHH
Q 023407 105 LFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYC 184 (282)
Q Consensus 105 ~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~ 184 (282)
..+.+-|++++|+..|.+....-......-+..+-+-.+-+-.||+.....+..++-..-- +..|..-.-++ .|...
T Consensus 151 ~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~k--lg~~~ 227 (263)
T PRK10803 151 ALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFK--VGVIM 227 (263)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHH--HHHHH
Confidence 3445567777777777776554444444445555555566666777766666555533211 12333333332 35555
Q ss_pred hhcccHHHHHHHhhccccccc
Q 023407 185 MSTRNFKKAASLFLDSISTFT 205 (282)
Q Consensus 185 l~~r~f~~AA~lfld~~~tft 205 (282)
...+++.+|...|-.++..|.
T Consensus 228 ~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 228 QDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHcCCHHHHHHHHHHHHHHCc
Confidence 566777777777666655543
No 54
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.43 E-value=1.5 Score=33.52 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=52.2
Q ss_pred HHHhCCHHHHHHHHHHhhccccCchhHH------HHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCC
Q 023407 107 YIQIGDKEKALEQLKVTESKTVAVGQKM------DLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGD 169 (282)
Q Consensus 107 ~~~iGd~~~A~k~y~~~~e~~~s~~~~i------d~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggd 169 (282)
..+.||+.+|++...+.+|++...+..- -..+++.++-..+|++......+.+|-.+..+.+|
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 3578999999999999999986666533 34677888888899999999999999988877666
No 55
>PLN03218 maturation of RBCL 1; Provisional
Probab=89.38 E-value=38 Score=37.35 Aligned_cols=92 Identities=18% Similarity=0.015 Sum_probs=56.6
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
..|..+..-|++.|+.++|++.|.++.+....+... .+-.+|....-.|+.........++.. .|..++..
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~--Ty~sLL~a~~k~G~le~A~~l~~~M~k---~Gi~pd~~---- 790 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI--TYSILLVASERKDDADVGLDLLSQAKE---DGIKPNLV---- 790 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCCHH----
Confidence 346777777777788888887777776654443322 344455566666776666666665533 34444433
Q ss_pred HHHHHHHhhcccHHHHHHHhh
Q 023407 178 VYEGLYCMSTRNFKKAASLFL 198 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfl 198 (282)
+|..|..|+.+.|.+|....-
T Consensus 791 tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 791 MCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 566666666677877776543
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.02 E-value=3.4 Score=39.74 Aligned_cols=163 Identities=15% Similarity=0.140 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCH
Q 023407 32 GLKGEVFSMVKAHDMASFYETLVAES------------------VLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGE 93 (282)
Q Consensus 32 ~a~~~ll~~ik~~~m~~~Y~~l~~~~------------------~~~~D~~~~~~~~~~n~~~l~~Le~~lk~~~~nl~~ 93 (282)
+|-+.+...+++-.|+.-|-.+.+-+ .+|.|...+-.+- +..+.+++-+..++=|+.-+--
T Consensus 241 ~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~A-Ri~eam~~~~~a~~lYk~vlk~ 319 (478)
T KOG1129|consen 241 RAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQA-RIHEAMEQQEDALQLYKLVLKL 319 (478)
T ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhH-HHHHHHHhHHHHHHHHHHHHhc
Confidence 56677888888888887776665543 2778877766554 5667777777777777754433
Q ss_pred HHHHH-HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcch
Q 023407 94 SEVRE-AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER 172 (282)
Q Consensus 94 eeIr~-a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~r 172 (282)
+.|-. +.--+|.=|+=-|.-+-|++.|+++..-...++. +..++--.+++.+.++.+...+.+|.++....|.
T Consensus 320 ~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe---Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~--- 393 (478)
T KOG1129|consen 320 HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE---LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ--- 393 (478)
T ss_pred CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH---HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch---
Confidence 32211 1222344444467889999999999987776664 4567777788889999999999999999874221
Q ss_pred hhHHHHHH--HHHHhhcccHHHHHHHhhccccc
Q 023407 173 KNRLKVYE--GLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 173 rnrLkvy~--gL~~l~~r~f~~AA~lfld~~~t 203 (282)
.+ .|+- |--.+.+|||.-|.++|--++..
T Consensus 394 aa--DvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 394 AA--DVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred hh--hhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 11 1222 44456799999999999887654
No 57
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=88.74 E-value=5.2 Score=36.96 Aligned_cols=93 Identities=8% Similarity=-0.044 Sum_probs=41.1
Q ss_pred HhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHH
Q 023407 101 LAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYE 180 (282)
Q Consensus 101 ~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~ 180 (282)
..+|..+...|++++|.+.+.++.+..... ......+-.+-...|+++....++.++-..... +.......-...
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~l 192 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHH
Confidence 344555555555555555555555433222 222333344444455555555555554433221 111111122234
Q ss_pred HHHHhhcccHHHHHHHhh
Q 023407 181 GLYCMSTRNFKKAASLFL 198 (282)
Q Consensus 181 gL~~l~~r~f~~AA~lfl 198 (282)
|...+..|++.+|...|=
T Consensus 193 a~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 193 ALFYLERGDYEAALAIYD 210 (355)
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 445555555555544443
No 58
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.72 E-value=0.84 Score=29.79 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=28.3
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCc
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV 130 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~ 130 (282)
.++..+|..|.+.|+.++|.+.|.++...+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 367889999999999999999999998765443
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=88.33 E-value=8.4 Score=38.93 Aligned_cols=162 Identities=13% Similarity=0.044 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHhhCHH--HHHHHHHhhhhHHHHhCCHHHHHHHHHHhhcc-ccCchhHH----HHHHHHHHHHHHcc
Q 023407 76 ELKKLDDRIADAEENLGES--EVREAHLAKSLFYIQIGDKEKALEQLKVTESK-TVAVGQKM----DLVFYTLQLGFFYM 148 (282)
Q Consensus 76 ~l~~Le~~lk~~~~nl~~e--eIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~-~~s~~~~i----d~~l~~irv~~~~~ 148 (282)
........+..+..+++++ .+-.....+|.-|...|++++|...+..+.+- |-+.|+.. .|+..+-.+-...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~ 255 (508)
T KOG1840|consen 176 SIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG 255 (508)
T ss_pred cchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc
Confidence 3333444444444444443 34444666999999999999999999996543 44444322 22223444555567
Q ss_pred ChHHHHHHHHHHHHHHhh--CCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhcc
Q 023407 149 DFDLISKSIDKAKSLFEE--GGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIIS 226 (282)
Q Consensus 149 d~~~v~~~i~kA~~~~e~--ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLas 226 (282)
.+.......++|=+..+. |.+-.+..-.-.=.|..+..+|+|++|...+-.++--+.-....+..+++..-.-.+++.
T Consensus 256 k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~ 335 (508)
T KOG1840|consen 256 KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAIL 335 (508)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 788888888888888875 666665543333345556889999999999988865444444566777776555444443
Q ss_pred --CChHHHHHHcc
Q 023407 227 --LDRVSLKQKVV 237 (282)
Q Consensus 227 --l~R~eLk~kvl 237 (282)
+++.|--.+++
T Consensus 336 ~~~~~~Eea~~l~ 348 (508)
T KOG1840|consen 336 QSMNEYEEAKKLL 348 (508)
T ss_pred HHhcchhHHHHHH
Confidence 34444444433
No 60
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.25 E-value=3.1 Score=32.23 Aligned_cols=58 Identities=19% Similarity=0.372 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC-----HHHHHH--HHHhhhhHHHHhCCHHHHHHHHHHhh
Q 023407 67 DSMRTKIEDELKKLDDRIADAEENLG-----ESEVRE--AHLAKSLFYIQIGDKEKALEQLKVTE 124 (282)
Q Consensus 67 ~~~~~~n~~~l~~Le~~lk~~~~nl~-----~eeIr~--a~~~la~~~~~iGd~~~A~k~y~~~~ 124 (282)
+.+.++.++=++.++..|+..+.-.+ +.-+.+ +|..=|.||+..||.-+|+.|++=+.
T Consensus 4 ~~l~ekiekYi~~leeaL~~~k~~~~~~s~ae~~~~ma~~Y~~Dakyf~ekGD~vtAfa~~sYa~ 68 (90)
T COG1849 4 EELAEKIEKYIELLEEALKEIKSRPGDRSAAEDFVDMAESYFEDAKYFLEKGDYVTAFAALSYAH 68 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 45667777888889999998887777 333444 47788999999999999999887654
No 61
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=88.10 E-value=6.3 Score=32.83 Aligned_cols=77 Identities=14% Similarity=0.042 Sum_probs=52.7
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchh----HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh--CCCc
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ----KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE--GGDW 170 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~----~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~--ggdw 170 (282)
-.++..+|..|...|+.+.|++.|.++...-...+. ..-+....=|+.+..|++.....+..+|....++ |.++
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 457899999999999999999999998865332221 1112222333444778998888888888777655 3454
Q ss_pred chh
Q 023407 171 ERK 173 (282)
Q Consensus 171 ~rr 173 (282)
+..
T Consensus 152 ~~~ 154 (168)
T CHL00033 152 GNY 154 (168)
T ss_pred ccH
Confidence 443
No 62
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=88.10 E-value=4.8 Score=42.34 Aligned_cols=99 Identities=13% Similarity=-0.027 Sum_probs=81.4
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++.-+|..+...|++++|++.+.++... .+++ .++.+.+..+-...|++....+.+.+|..+- ++ ...+
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n-~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-----Pd-~~~l 429 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGN-QGLRIDYASVLQARGWPRAAENELKKAEVLE-----PR-NINL 429 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CC-ChHH
Confidence 456778999999999999999999998865 4444 5788999999999999999998888887742 22 2348
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
.+..|+..+..++|.+|-..+=+++..+
T Consensus 430 ~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 430 EVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 8999999999999999998887776544
No 63
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=88.06 E-value=5.9 Score=32.57 Aligned_cols=94 Identities=12% Similarity=-0.044 Sum_probs=71.7
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 179 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy 179 (282)
+..+|.-+.+.|++++|++.|.++...... ..+..+.+-.+..-.|++........+|-.+-- ++ ......
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p--~~----~~a~~~ 97 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW---SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA--SH----PEPVYQ 97 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CC----cHHHHH
Confidence 445788889999999999999998865433 345667777777778899998888888876531 23 233366
Q ss_pred HHHHHhhcccHHHHHHHhhcccc
Q 023407 180 EGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 180 ~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.|+.+...|++.+|...|-.++.
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888899999999999988754
No 64
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.84 E-value=0.88 Score=26.99 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=25.6
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhcc
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESK 126 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~ 126 (282)
+|+..+|.-|.+.|+.++|.+.|.+..+.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 47888999999999999999999997653
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=87.24 E-value=19 Score=31.27 Aligned_cols=106 Identities=13% Similarity=0.064 Sum_probs=72.6
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-+.+..+|.-+.+.|+.+.|...|.++...-.......+..+.+-.+-+..|++.......+++-..-- .++... ..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~-~a 109 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP--NHPDAD-YA 109 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--CCCchH-HH
Confidence 346788999999999999999999998765544445556677777777788999999988888866432 222211 11
Q ss_pred HHHHHHHHhh--------cccHHHHHHHhhccccccc
Q 023407 177 KVYEGLYCMS--------TRNFKKAASLFLDSISTFT 205 (282)
Q Consensus 177 kvy~gL~~l~--------~r~f~~AA~lfld~~~tft 205 (282)
-...|..... .+++..|.+.|-.++..++
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 1222333332 2778888888877765554
No 66
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=86.94 E-value=2.3 Score=31.23 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=45.3
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA 160 (282)
.+..+|.-|++.|++++|++.+.+ .+ .++++ .+..+-+-|..+..|++....+.+++|
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~-~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSN-PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCH-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 566689999999999999999988 32 22222 566666689999999999999988876
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=86.54 E-value=30 Score=34.86 Aligned_cols=25 Identities=8% Similarity=0.018 Sum_probs=13.7
Q ss_pred HHHHHHHhhcccHHHHHHHhhcccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
...|..+...|++.+|...|....+
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 3445555556666666666554433
No 68
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=86.43 E-value=37 Score=33.79 Aligned_cols=184 Identities=11% Similarity=0.094 Sum_probs=115.2
Q ss_pred HHhhHhHhhcCCCCcchhhHHHHHHHHHHHHhcCCH-H--------HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 023407 12 VLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMA-S--------FYETLVAESVLEMDQSVLDSMRTKIEDELKKLDD 82 (282)
Q Consensus 12 ~l~~l~f~~~~~~~~~~~~~~a~~~ll~~ik~~~m~-~--------~Y~~l~~~~~~~~D~~~~~~~~~~n~~~l~~Le~ 82 (282)
++.+++-++.-.+ +|...++.|....+.+++- | ||-.+..-+++ |. ....++.-+.
T Consensus 190 ~~~kll~~vGF~g----dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~--~~---------~~~~~~~a~~ 254 (468)
T PF10300_consen 190 KVLKLLSFVGFSG----DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGI--DG---------EDVPLEEAEE 254 (468)
T ss_pred HHHHHHhhcCcCC----cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCC--cc---------cCCCHHHHHH
Confidence 4445555554333 7888999998888876642 2 44444444455 20 2233344444
Q ss_pred HHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHH-HHHHHHHHHccChHHHHHHHHHHH
Q 023407 83 RIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLV-FYTLQLGFFYMDFDLISKSIDKAK 161 (282)
Q Consensus 83 ~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~-l~~irv~~~~~d~~~v~~~i~kA~ 161 (282)
-|+......-+..+- +.-.|.++...|+.++|++.|.++.+-...-.+.=.+| +.+.=..++.+||.....+..+..
T Consensus 255 lL~~~~~~yP~s~lf--l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 255 LLEEMLKRYPNSALF--LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHhCCCcHHH--HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 455555555554444 55679999999999999999999886445555544443 333334556789999988887776
Q ss_pred HHHhhCCCcchhhHHHHHHHHHHhhcccH-------HHHHHHhhccccccc--cccccCchhHHH
Q 023407 162 SLFEEGGDWERKNRLKVYEGLYCMSTRNF-------KKAASLFLDSISTFT--TYELFPYDTFIF 217 (282)
Q Consensus 162 ~~~e~ggdw~rrnrLkvy~gL~~l~~r~f-------~~AA~lfld~~~tft--~~elis~~d~a~ 217 (282)
.. ..|. +.-..-..|...+..++. ++|.++|-.+..-.. ...-++.+.||.
T Consensus 333 ~~----s~WS-ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~ 392 (468)
T PF10300_consen 333 KE----SKWS-KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVI 392 (468)
T ss_pred hc----cccH-HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHH
Confidence 63 5796 445555557777777777 888888887744221 124556666654
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.24 E-value=3.5 Score=41.40 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=45.7
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHH-HHccChHHHHHHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLG-FFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~-~~~~d~~~v~~~i~kA~~~ 163 (282)
++-.+|+.|++-|.+++|+++|..+.+.|..- -+.++-+--+ .-.|||..|..-.++|-++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e----piFYsNraAcY~~lgd~~~Vied~TkALEl 178 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE----PIFYSNRAACYESLGDWEKVIEDCTKALEL 178 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC----chhhhhHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 46789999999999999999999999999874 1222222222 2348999998888888654
No 70
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=85.83 E-value=62 Score=35.81 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=69.7
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchh--HH---------HHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ--KM---------DLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~--~i---------d~~l~~irv~~~~~d~~~v~~~i~kA~~~~e 165 (282)
-.++..+|..|.+.|+.++|++.|.++.+....... +. ...+..-.+.+..|+++.......+|-..--
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P 382 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN 382 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 457888999999999999999999998876543321 11 1223334455667888888888887776521
Q ss_pred hCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 166 EGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 166 ~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
.+. ......|-..+..|++.+|.+.|-.++..
T Consensus 383 --~~~----~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 383 --TDS----YAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred --CCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 111 12234566778899999999999888643
No 71
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.78 E-value=10 Score=37.99 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=61.5
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCC-CcchhhH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG-DWERKNR 175 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~gg-dw~rrnr 175 (282)
++-+..+|+-|.+.+.+++|+|||.++..-.-+.|. ....+-.+-=.++|......+..|-=...+..| --+..-+
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~---~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k 508 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS---ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK 508 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 345778899999999999999999998876554443 233344444444566666666655544333222 2222344
Q ss_pred HHHHHHHHHhhcccHHHHHH
Q 023407 176 LKVYEGLYCMSTRNFKKAAS 195 (282)
Q Consensus 176 Lkvy~gL~~l~~r~f~~AA~ 195 (282)
-.+..+-+....++|++|..
T Consensus 509 a~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHHHHHHhhcchHHHHH
Confidence 55667888888999988865
No 72
>PRK04841 transcriptional regulator MalT; Provisional
Probab=85.69 E-value=22 Score=37.58 Aligned_cols=108 Identities=10% Similarity=-0.041 Sum_probs=73.6
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchh---H--HHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCC
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ---K--MDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG 168 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~---~--id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~gg 168 (282)
.....++..+|..+...||.+.|...+.++.+.+...+. . .-+....-++....|++......+.++-...+..+
T Consensus 528 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 607 (903)
T PRK04841 528 HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ 607 (903)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC
Confidence 344456788899999999999999999998877644331 1 11223345566777999999999988877766433
Q ss_pred CcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 169 DWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 169 dw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
+.. ....-...|...+..|++.+|...+-.+..
T Consensus 608 ~~~-~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 608 PQQ-QLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred chH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 221 222333456677789999999887766643
No 73
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.66 E-value=12 Score=37.88 Aligned_cols=150 Identities=14% Similarity=0.181 Sum_probs=100.6
Q ss_pred HhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchh-hHHHHH
Q 023407 101 LAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK-NRLKVY 179 (282)
Q Consensus 101 ~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rr-nrLkvy 179 (282)
..+|+--++.||++.|+.+|+.+..-..+ .|++ .-=|.+-+ --...+.+-+.-|...++.-.||.-- +|
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvl----ySnrsaa~-a~~~~~~~al~da~k~~~l~p~w~kgy~r---- 75 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPT-NHVL----YSNRSAAY-ASLGSYEKALKDATKTRRLNPDWAKGYSR---- 75 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCC-ccch----hcchHHHH-HHHhhHHHHHHHHHHHHhcCCchhhHHHH----
Confidence 35678888999999999999999876655 5543 23333322 12234556666777777777899642 22
Q ss_pred HHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhccCChHHHHHHccCChhHHHhhcCCchHHHHHHHH
Q 023407 180 EGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSL 259 (282)
Q Consensus 180 ~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLasl~R~eLk~kvl~~~e~~~~l~~~P~l~~ll~sf 259 (282)
.|-++++.|+|.+|-..|-+.+- ..++.=+.++||.-.-.-+|.- .....+|.|.+-+...|..+.++
T Consensus 76 ~Gaa~~~lg~~~eA~~ay~~GL~-------~d~~n~~L~~gl~~a~~~~~~~--~~~~~~p~~~~~l~~~p~t~~~~--- 143 (539)
T KOG0548|consen 76 KGAALFGLGDYEEAILAYSEGLE-------KDPSNKQLKTGLAQAYLEDYAA--DQLFTKPYFHEKLANLPLTNYSL--- 143 (539)
T ss_pred hHHHHHhcccHHHHHHHHHHHhh-------cCCchHHHHHhHHHhhhHHHHh--hhhccCcHHHHHhhcChhhhhhh---
Confidence 47888999999999988877765 4455566777776655222222 45678888888888888876654
Q ss_pred hcCChhHHHHHHH
Q 023407 260 YDCQYKSFFSAFG 272 (282)
Q Consensus 260 y~~~Y~~~~~~L~ 272 (282)
++..|...++.+.
T Consensus 144 ~~~~~~~~l~~~~ 156 (539)
T KOG0548|consen 144 SDPAYVKILEIIQ 156 (539)
T ss_pred ccHHHHHHHHHhh
Confidence 3445555554443
No 74
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=85.10 E-value=23 Score=36.58 Aligned_cols=93 Identities=13% Similarity=-0.017 Sum_probs=50.2
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
.|..+..-|++.|+.++|++.|.++.+....+... .+-++|+.....|+++........... .|...+.. +
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~i~~~m~~---~g~~~d~~----~ 362 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF--TFSIMIRIFSRLALLEHAKQAHAGLIR---TGFPLDIV----A 362 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhccchHHHHHHHHHHHH---hCCCCCee----e
Confidence 45666667777777777777777776554444332 355566666666666555544433322 23233322 3
Q ss_pred HHHHHHh--hcccHHHHHHHhhcc
Q 023407 179 YEGLYCM--STRNFKKAASLFLDS 200 (282)
Q Consensus 179 y~gL~~l--~~r~f~~AA~lfld~ 200 (282)
|.+|-.+ ..|++.+|-+.|-..
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3443322 256677777666543
No 75
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=85.04 E-value=20 Score=39.25 Aligned_cols=154 Identities=12% Similarity=0.056 Sum_probs=95.1
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
..+...|..+..-||.++|+..|.++.+.-... ..+.+.+.+.-+..|+.+....++++|-..-. .|-.-...
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n---~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~n~~~~~~-- 117 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPDN---IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--GDARLERS-- 117 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHHHH--
Confidence 457788888888999999999999998865555 56669999999999999999988888866521 12111122
Q ss_pred HHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHh------ccCChHHHHHHccCChhHHHhhcCC--
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSI------ISLDRVSLKQKVVDAPEILTVIGKI-- 249 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aL------asl~R~eLk~kvl~~~e~~~~l~~~-- 249 (282)
|..+ ++|.+|+..+-..+..+. ..--.|..++.+ +++-+.+==.+.|+ ...+...
T Consensus 118 ----La~i--~~~~kA~~~ye~l~~~~P-------~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~ 180 (987)
T PRK09782 118 ----LAAI--PVEVKSVTTVEELLAQQK-------ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPE 180 (987)
T ss_pred ----HHHh--ccChhHHHHHHHHHHhCC-------CChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCC
Confidence 2222 999999988888766443 333344455544 32333222222333 2222223
Q ss_pred ch-HHHHHHHHh--cCChhHHHHHHHHhh
Q 023407 250 PY-LSEFLNSLY--DCQYKSFFSAFGEKR 275 (282)
Q Consensus 250 P~-l~~ll~sfy--~~~Y~~~~~~L~~~~ 275 (282)
|. ++-.+..+| -.+|...+..|.++.
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 32 333324555 567776666665543
No 76
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=83.89 E-value=8.4 Score=42.49 Aligned_cols=97 Identities=13% Similarity=0.033 Sum_probs=73.2
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
.+..+|+.|.+.|+.++|++.|.++...... -.+..+.+.++-...|++......+.++-..- .+..+ ...
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~P~---~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-----p~~~~-~~~ 675 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTREPG---NADARLGLIEVDIAQGDLAAARAQLAKLPATA-----NDSLN-TQR 675 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-----CCChH-HHH
Confidence 5678999999999999999999999876433 35788999999999999999999888765431 11111 122
Q ss_pred HHHHHHhhcccHHHHHHHhhcccccc
Q 023407 179 YEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 179 y~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
..|......|++.+|...|-.++...
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 34666678999999999888876543
No 77
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.52 E-value=11 Score=35.46 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=87.5
Q ss_pred HHHHHHHh-cC--C-HHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCHHHHHHHHHhhhhH
Q 023407 36 EVFSMVKA-HD--M-ASFYETLVAESV----LEMDQSVLDSMRTKIEDELKKLDDRIADAEEN-LGESEVREAHLAKSLF 106 (282)
Q Consensus 36 ~ll~~ik~-~~--m-~~~Y~~l~~~~~----~~~D~~~~~~~~~~n~~~l~~Le~~lk~~~~n-l~~eeIr~a~~~la~~ 106 (282)
.+.+.||. ++ | ..-|+..+..++ +..-.+.+=..++.+--+|.+-+..++|.++- .++..-.++|..+|--
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34566664 33 2 358888888874 33333555567778888899999999999854 4778889999999999
Q ss_pred HHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCC
Q 023407 107 YIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG 168 (282)
Q Consensus 107 ~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~gg 168 (282)
|+.-|+.++|+++|.++.|- ..|+..+++++..|+..+.++.
T Consensus 159 ~~~~gk~~~A~~aykKaLel--------------------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALEL--------------------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHccCcHHHHHHHHHhhhcc--------------------CCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999873 3567788999999999887643
No 78
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.35 E-value=2.5 Score=23.13 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=25.0
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhcc
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESK 126 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~ 126 (282)
.++..+|..|...|+.+.|..+|.++...
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35778999999999999999999987653
No 79
>PRK14574 hmsH outer membrane protein; Provisional
Probab=83.14 E-value=13 Score=39.85 Aligned_cols=23 Identities=4% Similarity=-0.054 Sum_probs=11.1
Q ss_pred hhhhHHHHhCCHHHHHHHHHHhh
Q 023407 102 AKSLFYIQIGDKEKALEQLKVTE 124 (282)
Q Consensus 102 ~la~~~~~iGd~~~A~k~y~~~~ 124 (282)
+++..+...|+.+.|+..+.++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc
Confidence 44444444455555544444444
No 80
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=82.77 E-value=12 Score=33.78 Aligned_cols=160 Identities=15% Similarity=0.079 Sum_probs=72.5
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
.+..++.+ ...|+.++|.+.+.+..+...+ -+.....+.+..-.++|+.+...++++..... -.....+-+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~ 150 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDGD----PRYLLSALQLYYRLGDYDEAEELLEKLEELPA----APDSARFWL 150 (280)
T ss_dssp -------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------T-HHHHH
T ss_pred cccccccc-cccccccccccccccccccccc----cchhhHHHHHHHHHhHHHHHHHHHHHHHhccC----CCCCHHHHH
Confidence 35567777 7999999999999888776432 34556777888889999999999999886443 223456667
Q ss_pred HHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhccCChHHHHHHccCChhHHHhhcCCchHHHHHHH
Q 023407 179 YEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNS 258 (282)
Q Consensus 179 y~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLasl~R~eLk~kvl~~~e~~~~l~~~P~l~~ll~s 258 (282)
..|-.....|+.++|.+.|-.++.-.+ -+.-+..+.+..++...+.+--+.++.. .....+..|.++..+-.
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al~~~P------~~~~~~~~l~~~li~~~~~~~~~~~l~~--~~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKALELDP------DDPDARNALAWLLIDMGDYDEAREALKR--LLKAAPDDPDLWDALAA 222 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH-T------T-HHHHHHHHHHHCTTCHHHHHHHHHHH--HHHH-HTSCCHCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHCCChHHHHHHHHH--HHHHCcCHHHHHHHHHH
Confidence 788888899999999999877765332 1122444555566666654421233433 22222556666554443
Q ss_pred --HhcCChhHHHHHHHHhh
Q 023407 259 --LYDCQYKSFFSAFGEKR 275 (282)
Q Consensus 259 --fy~~~Y~~~~~~L~~~~ 275 (282)
+.-++|...+..+....
T Consensus 223 ~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHH
T ss_pred Hhccccccccccccccccc
Confidence 33468887777766543
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=82.65 E-value=40 Score=31.04 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=64.0
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh----------
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE---------- 166 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~---------- 166 (282)
..++..+|.-+...|+.++|++.|.++.........+ ..+..++...+++......+.++-.....
T Consensus 132 ~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~----~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 207 (296)
T PRK11189 132 NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR----ALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEF 207 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHH
Confidence 4578899999999999999999999988766554421 12223344456666666666543222111
Q ss_pred -CCCcchh--------------------hHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 167 -GGDWERK--------------------NRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 167 -ggdw~rr--------------------nrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
-|+++.. .-...|.|......|++.+|...|-.++.
T Consensus 208 ~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 208 YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111110 01234568888888888888888877764
No 82
>PRK04841 transcriptional regulator MalT; Provisional
Probab=82.35 E-value=22 Score=37.58 Aligned_cols=106 Identities=13% Similarity=-0.016 Sum_probs=78.2
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchh---HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcch--
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ---KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER-- 172 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~---~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~r-- 172 (282)
.+...+|..+...|+.+.|...+.++.+.....|. .......+-.+.+..|++.....+..++-...+..+....
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 45677888899999999999999998766544333 3344455666778889999999999999988876443221
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 173 KNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 173 rnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
..-+....|......|++.+|...+-.++..
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 2334455677777889999999888877554
No 83
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=81.69 E-value=2.7 Score=34.36 Aligned_cols=50 Identities=10% Similarity=-0.032 Sum_probs=40.9
Q ss_pred hhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHH
Q 023407 90 NLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFY 139 (282)
Q Consensus 90 nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~ 139 (282)
....+..=+....+|+-+...|+.++|..+|.++.--|..++..+.++=.
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~ 105 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQK 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 33455666677889999999999999999999999999999998877543
No 84
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=81.38 E-value=2.8 Score=29.12 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=34.4
Q ss_pred HHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 023407 108 IQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (282)
Q Consensus 108 ~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~ 162 (282)
.+-|++++|++.|.++.+.... -.++.+.+.++.+..|+++.....++++-.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567888888888887765443 345566777777777777776666655544
No 85
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=80.87 E-value=32 Score=34.23 Aligned_cols=107 Identities=23% Similarity=0.244 Sum_probs=64.5
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHH--------------------HHHHH-----------HHHHHc
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDL--------------------VFYTL-----------QLGFFY 147 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~--------------------~l~~i-----------rv~~~~ 147 (282)
-+..+|+.++.+||..+|+--|++++--..-+=.-||. .|++. -+.+.-
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDE 313 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhh
Confidence 46789999999999999999999877322222222333 23322 223333
Q ss_pred cChHHHHHHHHHHHHH--------HhhCC------C------------cchhhHHHHHHHH--HHhhcccHHHHHHHhhc
Q 023407 148 MDFDLISKSIDKAKSL--------FEEGG------D------------WERKNRLKVYEGL--YCMSTRNFKKAASLFLD 199 (282)
Q Consensus 148 ~d~~~v~~~i~kA~~~--------~e~gg------d------------w~rrnrLkvy~gL--~~l~~r~f~~AA~lfld 199 (282)
.++.....+.+|+-+. +-+|. . .-+..||.+|+|| .+|+.+.|++|--.==.
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 4445555555554322 11221 1 1134899999998 46899999998665555
Q ss_pred cccccc
Q 023407 200 SISTFT 205 (282)
Q Consensus 200 ~~~tft 205 (282)
+.-+|.
T Consensus 394 ~~~~~~ 399 (564)
T KOG1174|consen 394 TIRLFQ 399 (564)
T ss_pred HHHHhh
Confidence 555554
No 86
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=80.63 E-value=34 Score=29.68 Aligned_cols=110 Identities=19% Similarity=0.286 Sum_probs=68.4
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhh-ccccCchhHHHHHHHHHHHHHH---------ccChHHHHHHHHHHHHH
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTE-SKTVAVGQKMDLVFYTLQLGFF---------YMDFDLISKSIDKAKSL 163 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~-e~~~s~~~~id~~l~~irv~~~---------~~d~~~v~~~i~kA~~~ 163 (282)
.-...+.+.+|.-|++.||.+.|...|.+-. .|..++ + ++-.+-++=++.+ ..|...+.+-+...+.+
T Consensus 39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~-~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l 116 (203)
T PF13525_consen 39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-K-ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL 116 (203)
T ss_dssp TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-T-HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-c-hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH
Confidence 3456788999999999999999999999954 444444 3 3333333323222 34555566666666777
Q ss_pred HhhCCC--cch---------hh---HHHHHHHHHHhhcccHHHHHHHhhccccccc
Q 023407 164 FEEGGD--WER---------KN---RLKVYEGLYCMSTRNFKKAASLFLDSISTFT 205 (282)
Q Consensus 164 ~e~ggd--w~r---------rn---rLkvy~gL~~l~~r~f~~AA~lfld~~~tft 205 (282)
+..-.+ +.. ++ +-..+-|-+.+..|.|..|+.-|-.++..|.
T Consensus 117 i~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 117 IKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred HHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 765333 211 22 2234447788899999999999999988875
No 87
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.35 E-value=13 Score=33.16 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-----CHHH--HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccc--cCchhHHHHHH
Q 023407 68 SMRTKIEDELKKLDDRIADAEENL-----GESE--VREAHLAKSLFYIQIGDKEKALEQLKVTESKT--VAVGQKMDLVF 138 (282)
Q Consensus 68 ~~~~~n~~~l~~Le~~lk~~~~nl-----~~ee--Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~--~s~~~~id~~l 138 (282)
.++.-...+|.++....+.+.+-+ ++++ .-....-+||.+...||+.+|.++|.++.+.- ...+..+.|=|
T Consensus 123 ~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lqmKL 202 (207)
T COG2976 123 NLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREILQMKL 202 (207)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHHHHhHH
Confidence 344444455555555444433211 2222 22335568999999999999999999999874 33444555544
No 88
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.71 E-value=13 Score=35.07 Aligned_cols=86 Identities=9% Similarity=0.125 Sum_probs=57.0
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHH-------HHHHHHHHHhhCCCcch
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISK-------SIDKAKSLFEEGGDWER 172 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~-------~i~kA~~~~e~ggdw~r 172 (282)
+..-|+=+.+-||+++|+..|+++.+...+. +++|.|...+-. -|.-+++.+.- | ..
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-------------AVyycNRAAAy~~Lg~~~~AVkDce~Al~i--D-p~ 147 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-------------AVYYCNRAAAYSKLGEYEDAVKDCESALSI--D-PH 147 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-------------chHHHHHHHHHHHhcchHHHHHHHHHHHhc--C-hH
Confidence 5566888899999999999999999877443 223333333322 22333333321 1 13
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHhhccc
Q 023407 173 KNRLKVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 173 rnrLkvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
-.|.-.-.|++.++.++|.+|.+.|=.++
T Consensus 148 yskay~RLG~A~~~~gk~~~A~~aykKaL 176 (304)
T KOG0553|consen 148 YSKAYGRLGLAYLALGKYEEAIEAYKKAL 176 (304)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHhhh
Confidence 36666667999999999999999875543
No 89
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=78.92 E-value=35 Score=34.37 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=77.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhc---cccCchh-
Q 023407 59 LEMDQSVLDSMRTKIEDELKKLDDRIADAEE--NLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTES---KTVAVGQ- 132 (282)
Q Consensus 59 ~~~D~~~~~~~~~~n~~~l~~Le~~lk~~~~--nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e---~~~s~~~- 132 (282)
-|.|+.....+-.=- .++.+++..+|-|+. ++|+.+ -+++..+|+.|-+.+|.++|..+|.+-.+ -|+..+.
T Consensus 428 kPnDsRlw~aLG~CY-~kl~~~~eAiKCykrai~~~dte-~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~ 505 (559)
T KOG1155|consen 428 KPNDSRLWVALGECY-EKLNRLEEAIKCYKRAILLGDTE-GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDE 505 (559)
T ss_pred CCCchHHHHHHHHHH-HHhccHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchH
Confidence 688998887777544 889999999998884 445543 57899999999999999999999998554 3444443
Q ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 023407 133 KMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (282)
Q Consensus 133 ~id~~l~~irv~~~~~d~~~v~~~i~kA~~ 162 (282)
.+..++-+.+--+-.+||+....|..++-.
T Consensus 506 t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 506 TIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 666666666666666899988888776643
No 90
>PRK12370 invasion protein regulator; Provisional
Probab=78.67 E-value=78 Score=31.93 Aligned_cols=96 Identities=10% Similarity=-0.068 Sum_probs=69.2
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-.++..+|..+...|+.++|.++|.++.+...... +..+.+-.+.+..|+++.....+++|-.+-- .+....
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P--~~~~~~--- 409 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA---DIKYYYGWNLFMAGQLEEALQTINECLKLDP--TRAAAG--- 409 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CChhhH---
Confidence 35688899999999999999999999998765543 3446666777788999999999999877631 221111
Q ss_pred HHHHHHHHhhcccHHHHHHHhhccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
...+......|+|.+|...+-..+
T Consensus 410 -~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 410 -ITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred -HHHHHHHHhccCHHHHHHHHHHHH
Confidence 122333455788999988876654
No 91
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=78.52 E-value=1e+02 Score=33.24 Aligned_cols=256 Identities=12% Similarity=0.088 Sum_probs=133.0
Q ss_pred CcchHHhhHhHhhcCCCCcchhhHHHHHHHHHHHHhcC--CHHHHHH--HHHhcC---------------CCCCH-HHHH
Q 023407 8 QAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHD--MASFYET--LVAESV---------------LEMDQ-SVLD 67 (282)
Q Consensus 8 ~p~~~l~~l~f~~~~~~~~~~~~~~a~~~ll~~ik~~~--m~~~Y~~--l~~~~~---------------~~~D~-~~~~ 67 (282)
.|...+.+++=.+.+-.... ...+|.+.+.+.||++. -.|||.- +.++.| -|-|. -|..
T Consensus 134 ~l~~~l~~ll~eAN~lfarg-~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ 212 (895)
T KOG2076|consen 134 KLAPELRQLLGEANNLFARG-DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKR 212 (895)
T ss_pred ccCHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34444555544443322221 56789999999999964 3455542 122221 23333 4433
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHH-
Q 023407 68 SMRTKIEDELKKLDDRI---ADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQL- 143 (282)
Q Consensus 68 ~~~~~n~~~l~~Le~~l---k~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv- 143 (282)
--.. .++++-++... ..+-+-. -+-+.-...++..|-+.|++..|..+|.++..+|. ..-++.+...||.
T Consensus 213 ladl--s~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 213 LADL--SEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--PVDIERIEDLIRRV 286 (895)
T ss_pred HHHH--HHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--chhHHHHHHHHHHH
Confidence 2221 11222222221 1111111 11256677899999999999999999999999987 3445555555554
Q ss_pred ---HHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc------------------
Q 023407 144 ---GFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS------------------ 202 (282)
Q Consensus 144 ---~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~------------------ 202 (282)
-+..++.....+.++.+=+ .++|-..-.-+.++.+|+. ....|..|.....+-..
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s---~~~~~~~~ed~ni~ael~l-~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALS---KEKDEASLEDLNILAELFL-KNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHh---hccccccccHHHHHHHHHH-HhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 4444554444444444333 4455444455667777754 45666666666655422
Q ss_pred ----ccccccccCchhHHHHHHHHHhccCChHHHHHHccCChhHHHh--hcCCchHHHHHHHHhc-CChhHHHHHHHHhh
Q 023407 203 ----TFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTV--IGKIPYLSEFLNSLYD-CQYKSFFSAFGEKR 275 (282)
Q Consensus 203 ----tft~~elis~~d~a~Y~~l~aLasl~R~eLk~kvl~~~e~~~~--l~~~P~l~~ll~sfy~-~~Y~~~~~~L~~~~ 275 (282)
.++-+.=+||+==|++.. .||+.++=.++-.-++....-.++ .+..--+.++..+|-+ .+|+.-+..|..+-
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~-icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLM-ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred cccccccCCCCCCccchhHhHh-hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 122222233332223444 457777766665444443333332 1122224455555544 47777777766554
No 92
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.31 E-value=10 Score=33.85 Aligned_cols=77 Identities=14% Similarity=0.024 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCH--------HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCch--
Q 023407 62 DQSVLDSMRTKIEDELKKLDDRIADAEENLGE--------SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG-- 131 (282)
Q Consensus 62 D~~~~~~~~~~n~~~l~~Le~~lk~~~~nl~~--------eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~-- 131 (282)
--+|+=......+++..=|...++.+++..-. .+.+ .+.=+|+.+.+.|+.++|.+.|+++...-..+.
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~-l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~ 201 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT-LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEP 201 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcH
Confidence 45666666666667777777777777644422 3333 566799999999999999999999876544444
Q ss_pred hHHHHHHH
Q 023407 132 QKMDLVFY 139 (282)
Q Consensus 132 ~~id~~l~ 139 (282)
..+|+.-.
T Consensus 202 ~l~~~AR~ 209 (214)
T PF09986_consen 202 KLKDMARD 209 (214)
T ss_pred HHHHHHHH
Confidence 66666544
No 93
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=77.62 E-value=92 Score=32.19 Aligned_cols=55 Identities=13% Similarity=-0.115 Sum_probs=30.3
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDK 159 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~k 159 (282)
.+..+.+.|++.|+.++|.+.|.++.+..+ ..+-.+|......|+...+....++
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~------~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNL------ISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCCCCe------eeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 355666777777777777777766654321 1233444444444555555555444
No 94
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.55 E-value=49 Score=33.86 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=97.1
Q ss_pred HhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchh-HHHHHHHHHHHHHH--ccChHHHHHHHHHHHHHHh
Q 023407 89 ENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ-KMDLVFYTLQLGFF--YMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 89 ~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~-~id~~l~~irv~~~--~~d~~~v~~~i~kA~~~~e 165 (282)
.++.+.-.+... -++..|.+.|-+. |++...+..++|.+.++ -.--+|.++|+.+. .+|+..+...+.+.-....
T Consensus 93 ~~~~d~k~~~~~-ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 93 HRLTDLKFRCQF-LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN 170 (608)
T ss_pred cchHHHHHHHHH-HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 334444444444 5599999999999 99999999988877444 46667888887666 3699999999999999888
Q ss_pred hCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccc---cccccccCchhHHHHHHHHH
Q 023407 166 EGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST---FTTYELFPYDTFIFYTVLTS 223 (282)
Q Consensus 166 ~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t---ft~~elis~~d~a~Y~~l~a 223 (282)
.-|||.-+--+..++|+..+..++...+.+..=.+... +...+-.....+.++..+.=
T Consensus 171 ~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 171 QRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 77999999999999999999999887776666555322 22222226666666655433
No 95
>PLN03077 Protein ECB2; Provisional
Probab=75.91 E-value=52 Score=34.90 Aligned_cols=57 Identities=11% Similarity=-0.122 Sum_probs=33.6
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA 160 (282)
..+..+.+.|++.|+.+.|.+.|.++.+..+ ..+-.+|......|+++.+.....+.
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~------~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKDA------VSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe------eeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3466777777777777777777777654321 13444455555555655555555443
No 96
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=75.79 E-value=16 Score=31.80 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=52.0
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA 160 (282)
.++...|.-+.+.||+..|++.|.+..+.-.++...-+..|.+....+-.||+.......++-
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 357788999999999999999999999887778888899999999999999998887776663
No 97
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=75.79 E-value=36 Score=31.16 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=65.2
Q ss_pred HHHHHHHHhhhhHHHHhC-CHHHHHHHHHHhhccccCc-----------hhHHHHHHHHHHHHHHccChHHHHHHHHHHH
Q 023407 94 SEVREAHLAKSLFYIQIG-DKEKALEQLKVTESKTVAV-----------GQKMDLVFYTLQLGFFYMDFDLISKSIDKAK 161 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iG-d~~~A~k~y~~~~e~~~s~-----------~~~id~~l~~irv~~~~~d~~~v~~~i~kA~ 161 (282)
+++-+..+..|.-..+.+ +++.|.+...++.++|..+ ..++-++..+++.-+..++...+.+..+-.+
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 677788889999999999 9999999999999997441 2455566677777777777766655444444
Q ss_pred HHHhhCCC-cchh-hHHHHHHHHHHhhcccHHHHHHHhhccc
Q 023407 162 SLFEEGGD-WERK-NRLKVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 162 ~~~e~ggd-w~rr-nrLkvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
.+..+.|+ .+.. =++++..+ ..+..++.+.+...+
T Consensus 112 ~l~~e~~~~~~~~~L~l~il~~-----~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 112 LLESEYGNKPEVFLLKLEILLK-----SFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHhCCCCcHHHHHHHHHHhc-----cCChhHHHHHHHHHH
Confidence 44333344 2221 34444443 344444444444433
No 98
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=75.77 E-value=61 Score=29.21 Aligned_cols=138 Identities=12% Similarity=0.048 Sum_probs=89.3
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHH-H---------------HccChHHHHHHH
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLG-F---------------FYMDFDLISKSI 157 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~-~---------------~~~d~~~v~~~i 157 (282)
.....+.+.+|.-|++.||++.|+..|.+....-.+.... |-.+-++=++ + ...|.....+-+
T Consensus 66 ~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~ 144 (243)
T PRK10866 66 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF 144 (243)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence 5667789999999999999999999999966544433333 4333322222 1 123666777777
Q ss_pred HHHHHHHhhCCC--c--c-------hhhHHH---HHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHH
Q 023407 158 DKAKSLFEEGGD--W--E-------RKNRLK---VYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTS 223 (282)
Q Consensus 158 ~kA~~~~e~ggd--w--~-------rrnrLk---vy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~a 223 (282)
+..+.+++.-.+ . + .||+|. .+-|=+.+..|.|..|+..|=.++..|+-+ ++.+=+.|...-+
T Consensus 145 ~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t---~~~~eal~~l~~a 221 (243)
T PRK10866 145 RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT---QATRDALPLMENA 221 (243)
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC---chHHHHHHHHHHH
Confidence 777888876332 1 1 134433 233667888999999999999998887543 2344455555555
Q ss_pred hccCChHHHHHH
Q 023407 224 IISLDRVSLKQK 235 (282)
Q Consensus 224 Lasl~R~eLk~k 235 (282)
-..++.++.-++
T Consensus 222 y~~lg~~~~a~~ 233 (243)
T PRK10866 222 YRQLQLNAQADK 233 (243)
T ss_pred HHHcCChHHHHH
Confidence 555666655443
No 99
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=75.52 E-value=33 Score=33.06 Aligned_cols=56 Identities=7% Similarity=0.016 Sum_probs=24.3
Q ss_pred hhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 023407 104 SLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (282)
Q Consensus 104 a~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~ 162 (282)
+..+.+.|+.+.|++.+.+..+.- +++. ++.....++.+..|||+.+.+.+.+..+
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~--P~~~-~~l~ll~~~~~~~~d~~~a~~~l~~l~k 215 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA--PRHK-EVLKLAEEAYIRSGAWQALDDIIDNMAK 215 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444444444444444444444322 2222 3333444444444444444444444433
No 100
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=75.46 E-value=34 Score=35.99 Aligned_cols=60 Identities=12% Similarity=-0.090 Sum_probs=27.4
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~ 162 (282)
++..+|..+.+.|+.++|+..+.++.+....... .+.+-.+....|+.......++++-.
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~----~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN----LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555555555555555555554443222222 23333333444555544444444433
No 101
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=75.07 E-value=37 Score=28.75 Aligned_cols=46 Identities=4% Similarity=-0.097 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhhHHHHhC-CHHHHHHHHHHhhccccCchhHHHHHHH
Q 023407 94 SEVREAHLAKSLFYIQIG-DKEKALEQLKVTESKTVAVGQKMDLVFY 139 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iG-d~~~A~k~y~~~~e~~~s~~~~id~~l~ 139 (282)
|..=+....+|+-+...| +..+|..+|.++.--|..++..+.++=.
T Consensus 87 E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq~ 133 (148)
T TIGR00985 87 EAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQQ 133 (148)
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 334455778999999999 9999999999999999999998877543
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=74.42 E-value=19 Score=39.25 Aligned_cols=154 Identities=19% Similarity=0.191 Sum_probs=86.5
Q ss_pred CCCcchHHhhHhHhhcCCCCcchhhHHHHHHHHHHHHhc-CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 023407 6 TQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAH-DMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRI 84 (282)
Q Consensus 6 ~~~p~~~l~~l~f~~~~~~~~~~~~~~a~~~ll~~ik~~-~m~~~Y~~l~~~~~~~~D~~~~~~~~~~n~~~l~~Le~~l 84 (282)
.++|...++--.|...+|... -.-.+.-.+++.+.+. +-.|.|..+|.-+...+|+.
T Consensus 947 ~ki~sAs~al~~yf~~~p~~~--fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~s-------------------- 1004 (1238)
T KOG1127|consen 947 RKISSASLALSYYFLGHPQLC--FAYAANGSTLEHLEEYRAALELATRLIGLLELKLDES-------------------- 1004 (1238)
T ss_pred hhhhhhHHHHHHHHhcCcchh--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------------
Confidence 356777777777777776643 2233444455555543 33455555554432222222
Q ss_pred HHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 023407 85 ADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (282)
Q Consensus 85 k~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~ 164 (282)
+.|- +--+.|..++..|..++|.+++...-.---..-.+.++. +||.+|+..-.+..++|=++.
T Consensus 1005 ---qynv-------ak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~------lFfkndf~~sl~~fe~aLsis 1068 (1238)
T KOG1127|consen 1005 ---QYNV-------AKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLT------LFFKNDFFSSLEFFEQALSIS 1068 (1238)
T ss_pred ---hhhh-------hhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHH------HHHHhHHHHHHHHHHHHhhhc
Confidence 2221 444677888888888888887654321110111111111 288899999999999999888
Q ss_pred hhCCCcchhhHHHHHHHHHHhhcccHHHHHH-Hhhccc
Q 023407 165 EEGGDWERKNRLKVYEGLYCMSTRNFKKAAS-LFLDSI 201 (282)
Q Consensus 165 e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~-lfld~~ 201 (282)
+...| --+-+..++.+|..-+-+.+|+ ++..+.
T Consensus 1069 ~se~d----~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1069 NSESD----KVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred ccccc----hhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 64333 1233566777777666666554 444443
No 103
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=74.06 E-value=6.5 Score=27.60 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=18.8
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhcccc
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTV 128 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~ 128 (282)
.+..+|..|.+.|++++|.+.+.++.+.+.
T Consensus 31 ~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 31 LWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 455566666666666666666666665554
No 104
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=73.94 E-value=33 Score=35.53 Aligned_cols=96 Identities=10% Similarity=0.033 Sum_probs=59.9
Q ss_pred HHHHhhhhHHHHhCCHHH----HHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchh
Q 023407 98 EAHLAKSLFYIQIGDKEK----ALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 173 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~----A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rr 173 (282)
.++..+|..|.+.|+.++ |+..|.++.+.... -.....++..+-...|+++....++.+|-.+- .+.
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~---P~~--- 317 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD---NVRIVTLYADALIRTGQNEKAIPLLQQSLATH---PDL--- 317 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCC---
Confidence 345667888888887775 77788887765443 23555666666677778887777777766542 111
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 174 NRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 174 nrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.......|..+...|+|.+|...|-.++.
T Consensus 318 ~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 318 PYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11223345666667777777776655543
No 105
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=73.43 E-value=56 Score=27.71 Aligned_cols=91 Identities=25% Similarity=0.234 Sum_probs=61.2
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH-HH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL-KV 178 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL-kv 178 (282)
+.-.|--....||++.|++-|.++..-|.-.-+..+---.-.|+ .|+......-++||-++. |+--|..+- -|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL---q~~~e~ALdDLn~AleLa---g~~trtacqa~v 119 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRL---QGDDEEALDDLNKALELA---GDQTRTACQAFV 119 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHH---cCChHHHHHHHHHHHHhc---CccchHHHHHHH
Confidence 44557777899999999999999998887666666555555565 477777777777776664 554443222 23
Q ss_pred HHHH-HHh------hcccHHHHHHH
Q 023407 179 YEGL-YCM------STRNFKKAASL 196 (282)
Q Consensus 179 y~gL-~~l------~~r~f~~AA~l 196 (282)
-.|+ |.+ +.+||..||++
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHh
Confidence 3453 333 45677777775
No 106
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=73.32 E-value=2.8 Score=26.07 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.4
Q ss_pred HHHHHhhhhHHHHhCCHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALE 118 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k 118 (282)
-+++..+|..|...||.++|.+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhcC
Confidence 4689999999999999999863
No 107
>PF13041 PPR_2: PPR repeat family
Probab=73.20 E-value=6.3 Score=26.09 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=27.8
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCch
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG 131 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~ 131 (282)
.+..+-+.|++.|+.++|++.|.++.+.-..++
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~ 37 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPD 37 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 467778899999999999999999998755444
No 108
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.18 E-value=41 Score=30.30 Aligned_cols=85 Identities=14% Similarity=0.081 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhh-ccccC--chhHHHHHHHHHHHHHHcc
Q 023407 72 KIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTE-SKTVA--VGQKMDLVFYTLQLGFFYM 148 (282)
Q Consensus 72 ~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~-e~~~s--~~~~id~~l~~irv~~~~~ 148 (282)
....-++-|+.-+..++...-.--++....++|+.|++.||+++|++.|..+. .|-.. ..-.-++...+.+.+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 34455677777777776655444444557799999999999999999999862 22211 2223345566666677777
Q ss_pred ChHHHHHH
Q 023407 149 DFDLISKS 156 (282)
Q Consensus 149 d~~~v~~~ 156 (282)
|...+.+.
T Consensus 233 ~~~~~l~~ 240 (247)
T PF11817_consen 233 DVEDYLTT 240 (247)
T ss_pred CHHHHHHH
Confidence 77665544
No 109
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=73.13 E-value=16 Score=25.46 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=40.2
Q ss_pred hhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 103 KSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 103 la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
|+..|.+.||++.|++++.++..--.. -....+..-++-+-.|++......++++-+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356778889999999999887754222 3445555666666677888777777777654
No 110
>PLN03077 Protein ECB2; Provisional
Probab=73.13 E-value=1.3e+02 Score=31.86 Aligned_cols=156 Identities=12% Similarity=-0.010 Sum_probs=87.0
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
+|..+..-|++.|+.++|++.|.++.+....+.... +..+|...-..|+++....+.+..+.. .|..+ ....
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T--~~~ll~a~~~~g~v~ea~~~f~~M~~~--~gi~P----~~~~ 627 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT--FISLLCACSRSGMVTQGLEYFHSMEEK--YSITP----NLKH 627 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc--HHHHHHHHhhcChHHHHHHHHHHHHHH--hCCCC----chHH
Confidence 466777788888888888888888887655554433 444555555567766666666554421 13333 2345
Q ss_pred HHHHHH--hhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhccCC-hHHHHHHccCChhHHHhhcCCc---hH
Q 023407 179 YEGLYC--MSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLD-RVSLKQKVVDAPEILTVIGKIP---YL 252 (282)
Q Consensus 179 y~gL~~--l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLasl~-R~eLk~kvl~~~e~~~~l~~~P---~l 252 (282)
|..+-. -..|++++|-+.|-+. + +.| |.++|+.|.+.-... ..++-+++ ...+++.+| ..
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m-~-------~~p-d~~~~~aLl~ac~~~~~~e~~e~~-----a~~l~~l~p~~~~~ 693 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM-P-------ITP-DPAVWGALLNACRIHRHVELGELA-----AQHIFELDPNSVGY 693 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC-C-------CCC-CHHHHHHHHHHHHHcCChHHHHHH-----HHHHHhhCCCCcch
Confidence 665433 3478888887766543 2 334 355565555533222 22222221 223344444 34
Q ss_pred HHHHHHHh--cCChhHHHHHHHHhhh
Q 023407 253 SEFLNSLY--DCQYKSFFSAFGEKRS 276 (282)
Q Consensus 253 ~~ll~sfy--~~~Y~~~~~~L~~~~~ 276 (282)
.-++...| .+++.+..+....++.
T Consensus 694 y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 694 YILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 44555444 5688877777666543
No 111
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.12 E-value=24 Score=26.76 Aligned_cols=39 Identities=23% Similarity=0.178 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchh
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ 132 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~ 132 (282)
...+.+.+.+|..+...|+.++|++++.++..-.-..+.
T Consensus 38 ~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 38 SGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 367888999999999999999999999998765533333
No 112
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=72.67 E-value=15 Score=30.57 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=41.6
Q ss_pred HHHHHHHHhhccccCchhHHHHH-------HHHHHHHHHccChHHHHHHHHHHHHHHhh
Q 023407 115 KALEQLKVTESKTVAVGQKMDLV-------FYTLQLGFFYMDFDLISKSIDKAKSLFEE 166 (282)
Q Consensus 115 ~A~k~y~~~~e~~~s~~~~id~~-------l~~irv~~~~~d~~~v~~~i~kA~~~~e~ 166 (282)
+|.++|.+..=-+.||.+.+-|. +...|.++..+|+.....+|.||...+.+
T Consensus 5 ~~~~aY~qn~V~taSP~~Li~MLyeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~e 63 (132)
T COG1516 5 NAYQAYQQNQVNTASPHKLILMLYEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITE 63 (132)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 48889998876778888888884 45667788889999999999999888753
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.15 E-value=62 Score=31.05 Aligned_cols=122 Identities=14% Similarity=0.176 Sum_probs=79.4
Q ss_pred CcchHHhhHhHhhcCCCCcchh---------hHHHHHHHHHHHHhcCCHHHH------HHHHHhc-CCCCCH----HHHH
Q 023407 8 QAHLVLAHKRFLLTHPDVQDIE---------KVGLKGEVFSMVKAHDMASFY------ETLVAES-VLEMDQ----SVLD 67 (282)
Q Consensus 8 ~p~~~l~~l~f~~~~~~~~~~~---------~~~a~~~ll~~ik~~~m~~~Y------~~l~~~~-~~~~D~----~~~~ 67 (282)
.|.--+..+.|++...|.++.. +.+-...+.+.+-+|....|| -.+...+ ..|..+ .-++
T Consensus 291 ~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~ 370 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLD 370 (459)
T ss_pred CccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4555667777888776654211 234445555666665443322 2222222 233333 3455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH--------------HhhhhHHHHhCCHHHHHHHHHHhhccccC
Q 023407 68 SMRTKIEDELKKLDDRIADAEENLGESEVREAH--------------LAKSLFYIQIGDKEKALEQLKVTESKTVA 129 (282)
Q Consensus 68 ~~~~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~--------------~~la~~~~~iGd~~~A~k~y~~~~e~~~s 129 (282)
.+...-..++.++-.++...+.|-.++++|++. +..|.+|.+--|+..+.|.|+...|+|..
T Consensus 371 ~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~e 446 (459)
T KOG4340|consen 371 GLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCND 446 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhcc
Confidence 666777777888888888888888889999864 34677888888999999999999999864
No 114
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=71.72 E-value=7.4 Score=22.73 Aligned_cols=30 Identities=20% Similarity=0.052 Sum_probs=24.5
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccC
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVA 129 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s 129 (282)
+..+-.-|++.|+.++|.+.|.++......
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~ 32 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIE 32 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 455667899999999999999999875443
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.65 E-value=90 Score=29.31 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHh--h------ccccCchhHHHHHHHHHH
Q 023407 71 TKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVT--E------SKTVAVGQKMDLVFYTLQ 142 (282)
Q Consensus 71 ~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~--~------e~~~s~~~~id~~l~~ir 142 (282)
..-+..+.++.+.+-+..- .+.-..+..=|.+|+.-||.++|+++..+. . -+|..--|++|..-..++
T Consensus 86 ~~~~~~~~~l~E~~a~~~~----~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTD----GSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred chhHHHHHHHHHHHHhhcc----chhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666544221 222334556689999999999999987651 1 123333455555555555
Q ss_pred HHHHccChHHHHHHHHHHHHHHhhCCC---------------cchhhHHHHHHHHHHhhcccHHHHHHHhhccccccc
Q 023407 143 LGFFYMDFDLISKSIDKAKSLFEEGGD---------------WERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFT 205 (282)
Q Consensus 143 v~~~~~d~~~v~~~i~kA~~~~e~ggd---------------w~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft 205 (282)
.-.. .|-+++.+.++.|=--+..||. ..+...+---.+..+|.+|+|.+|-.++..++....
T Consensus 162 ~mq~-ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 162 KMQQ-IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHHc-cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 4332 2223333333333222222331 223344444456788999999999999999987654
No 116
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.26 E-value=34 Score=31.57 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=65.8
Q ss_pred HHhhhhHHHHh-CCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCC-----Ccchh
Q 023407 100 HLAKSLFYIQI-GDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG-----DWERK 173 (282)
Q Consensus 100 ~~~la~~~~~i-Gd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~gg-----dw~rr 173 (282)
+.++|++|-.- -|++.|+.+|..+-||=.+-...-.--=+.+.|+-+-+......+.|..=++..-..- -|..+
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 45677777665 6899999999999998777777666666777777555444444444444333322111 13222
Q ss_pred hHHHHHHHHHHhhcccH---HHHHHHhhccccccc
Q 023407 174 NRLKVYEGLYCMSTRNF---KKAASLFLDSISTFT 205 (282)
Q Consensus 174 nrLkvy~gL~~l~~r~f---~~AA~lfld~~~tft 205 (282)
.-+ .-.||-+|+..|- ..|.+.+.+..|+|+
T Consensus 196 dyf-lkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 196 DYF-LKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHH-HHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 111 1136777775543 678899999999997
No 117
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=71.21 E-value=42 Score=34.94 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=81.6
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhC------
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG------ 167 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~g------ 167 (282)
.-+...+.-++.||-..||.+.|.+....+.+.|.| .++.++...||.-..|+.+.....++.|.++--..
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT---liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT---LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch---HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 356677889999999999999999999999999986 58999999999999999999999988888763210
Q ss_pred -CCcc----------------hhhH--------------HHHHHHHHHhhcccHHHHHHHhhccc
Q 023407 168 -GDWE----------------RKNR--------------LKVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 168 -gdw~----------------rrnr--------------Lkvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
+... .|+. +-+-.|-+...+|+|-.|.+.|..+.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 0000 1111 22334777778899988999998874
No 118
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=71.14 E-value=7.6 Score=26.73 Aligned_cols=32 Identities=19% Similarity=0.065 Sum_probs=27.3
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccc
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKT 127 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~ 127 (282)
-..++..+|..+.+.|+.++|...|.++.+..
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46789999999999999999999999987543
No 119
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=71.12 E-value=6.2 Score=22.84 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.3
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLK 121 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~ 121 (282)
++..+|.-+...||.++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56789999999999999998775
No 120
>PLN03218 maturation of RBCL 1; Provisional
Probab=70.92 E-value=1.8e+02 Score=32.36 Aligned_cols=162 Identities=12% Similarity=0.042 Sum_probs=81.7
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchh----
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK---- 173 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rr---- 173 (282)
..+..+..-|++.|+.++|++.|.++.+....+.. ..+-.+|......|+.......+.+... .|..++..
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~--~TynsLI~a~~k~G~~eeA~~l~~eM~k---~G~~pd~~tyns 689 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE--VFFSALVDVAGHAGDLDKAFEILQDARK---QGIKLGTVSYSS 689 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCCHHHHHH
Confidence 45666777777777777777777777766554442 2344556666666666666666655442 22222211
Q ss_pred ---------------------------hHHHHHHHH--HHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHh
Q 023407 174 ---------------------------NRLKVYEGL--YCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSI 224 (282)
Q Consensus 174 ---------------------------nrLkvy~gL--~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aL 224 (282)
.-...|..| .+...|++.+|-+.|-+-... =+.|+.+.+.+++.+.
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-----Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-----GLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHH
Confidence 001122222 122355555555555543210 1345555555666666
Q ss_pred ccCChHHHHHHccCChhHHHhhcCCchHHHHHHHHhcCChhHHHHH
Q 023407 225 ISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSA 270 (282)
Q Consensus 225 asl~R~eLk~kvl~~~e~~~~l~~~P~l~~ll~sfy~~~Y~~~~~~ 270 (282)
....+-+.=.++++-- .+.-+...+.+...+-.+|..+|..+...
T Consensus 765 ~k~G~le~A~~l~~~M-~k~Gi~pd~~tynsLIglc~~~y~ka~~l 809 (1060)
T PLN03218 765 ERKDDADVGLDLLSQA-KEDGIKPNLVMCRCITGLCLRRFEKACAL 809 (1060)
T ss_pred HHCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 6666655544443321 11112223334444555666667766554
No 121
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=70.72 E-value=56 Score=33.87 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=70.7
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..+.+.|+.++|+..|.++.+-..... +....+.++-.-.|+++.......++-.. .++. ....
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~---~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~---~~~~ 355 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP---YVRAMYARALRQVGQYTAASDEFVQLARE---KGVT---SKWN 355 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Cccc---hHHH
Confidence 5778899999999999999999999987544332 44556667777789998888777666543 2221 1233
Q ss_pred HHHHHHHhhcccHHHHHHHhhccccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
.+.|..+...|++.+|...|-.++..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44577778899999999998877543
No 122
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=70.66 E-value=23 Score=35.26 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHH----HhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhcc
Q 023407 75 DELKKLDDRIADAE----ENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESK 126 (282)
Q Consensus 75 ~~l~~Le~~lk~~~----~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~ 126 (282)
.++.+.+.-+..++ -|-...+.+.+|..+|..|...|+.++|+.++.++.+.
T Consensus 86 ~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 86 FSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33445555554443 34445566778999999999999999999999999874
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=70.45 E-value=24 Score=28.84 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=49.8
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
..++..+|.-+.+.|+.++|+.+|.++..-... -.+..+++-.+-...|++........+|-.+
T Consensus 58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~---~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 58 WRAHIALAGTWMMLKEYTTAINFYGHALMLDAS---HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888999999999999999999998875432 2445566666666778999988888888664
No 124
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=70.27 E-value=11 Score=38.64 Aligned_cols=154 Identities=14% Similarity=0.231 Sum_probs=104.4
Q ss_pred HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHH---HHHHhhC--
Q 023407 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA---KSLFEEG-- 167 (282)
Q Consensus 93 ~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA---~~~~e~g-- 167 (282)
.-|.-+-|...-..+..|........+|.++++-|+.....+|=+++.+.-+ |-..+|...+..| -..++.+
T Consensus 269 g~En~~~Y~~~~~~f~~i~nIh~v~~s~~kl~e~c~~~~~~~~~~ls~LE~S---gWL~~i~~~L~~a~~ia~~l~~~~~ 345 (573)
T KOG1089|consen 269 GYENEDNYSQWKFLFLGIENIHVVRSSLQKLLEVCNNFLPTMDKWLSLLESS---GWLKHIRAILKAAAEIAKCLSSEGA 345 (573)
T ss_pred CCcchhhHHHHHHHhcCcchHHHHHHHHHHHHHHHhccCccHHHHHHHhhhc---cHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444455566777788889999999999999999999888888888888766 3344554444443 3334433
Q ss_pred -------CCcchh------------hHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhccCC
Q 023407 168 -------GDWERK------------NRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLD 228 (282)
Q Consensus 168 -------gdw~rr------------nrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLasl~ 228 (282)
.-|||. .-.+...|...|-.|++=.+...|.+=-.-.-+ .
T Consensus 346 sVlvhcsdGwDrT~qV~SLaQllLDP~yRTi~GFqsLIeKeWi~~GH~F~~Rc~hl~~-------------------~-- 404 (573)
T KOG1089|consen 346 SVLVHCSDGWDRTCQVSSLAQLLLDPYYRTIKGFQSLIEKEWISFGHKFLDRCGHLAY-------------------N-- 404 (573)
T ss_pred eEEEEccCCcchhHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHcCCcHHHhcCCccc-------------------c--
Confidence 248876 344567788888888888888888874321111 0
Q ss_pred hHHHHHHccCChhHHHhhc-------CCc--------hHHHHHHHHhcCChhHHHHHHHH
Q 023407 229 RVSLKQKVVDAPEILTVIG-------KIP--------YLSEFLNSLYDCQYKSFFSAFGE 273 (282)
Q Consensus 229 R~eLk~kvl~~~e~~~~l~-------~~P--------~l~~ll~sfy~~~Y~~~~~~L~~ 273 (282)
+...+ -.||.|.+||+ .-| .|..+...-|.|+|.+|+-..++
T Consensus 405 --~~~~k-e~SPvF~qFLDcvwQl~~QfP~~FEFne~fLi~L~~h~ys~qfGtFl~Nsek 461 (573)
T KOG1089|consen 405 --DGDSK-EESPVFLQFLDCVWQLLEQFPCAFEFNERFLIKLHEHAYSSQFGTFLGNSEK 461 (573)
T ss_pred --cCCCc-ccCcHHHHHHHHHHHHHhhCCcceehhHHHHHHHHHhhHHhhhccccccCHH
Confidence 11111 34677777766 334 48888889999999999865544
No 125
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.89 E-value=22 Score=34.25 Aligned_cols=86 Identities=17% Similarity=0.048 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhh-ccccCchhHHHHHHHHHHHHHHccChHHHHH
Q 023407 77 LKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTE-SKTVAVGQKMDLVFYTLQLGFFYMDFDLISK 155 (282)
Q Consensus 77 l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~-e~~~s~~~~id~~l~~irv~~~~~d~~~v~~ 155 (282)
...|++-.-+++++.- .|+...+.+=|+.|++.-++..|..+|++.. .+|..+.--+-++.|-.-.-+++||+..+.+
T Consensus 62 ~~~LqslK~da~E~ep-~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~ 140 (390)
T KOG0551|consen 62 NVCLQSLKADAEEGEP-HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALN 140 (390)
T ss_pred HHHHHHhhhccccCCh-HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4455555555555544 4588889999999999999999999999955 7788888777777777777888899988888
Q ss_pred HHHHHHHH
Q 023407 156 SIDKAKSL 163 (282)
Q Consensus 156 ~i~kA~~~ 163 (282)
-.++|...
T Consensus 141 Dcs~al~~ 148 (390)
T KOG0551|consen 141 DCSAALKL 148 (390)
T ss_pred HHHHHHhc
Confidence 77777654
No 126
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=69.61 E-value=58 Score=26.31 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=70.4
Q ss_pred HhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcc
Q 023407 109 QIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTR 188 (282)
Q Consensus 109 ~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r 188 (282)
..||...+-+.+.+....-.++.......|.+-.+.+..||++.....+.++-.. +.|...++..+...|-.++..+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~---~~d~~l~~~a~l~LA~~~~~~~ 99 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN---APDPELKPLARLRLARILLQQG 99 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHHcC
Confidence 6899999988899877766666677777888889999999999999888887663 3556666666666777888999
Q ss_pred cHHHHHHHhhc
Q 023407 189 NFKKAASLFLD 199 (282)
Q Consensus 189 ~f~~AA~lfld 199 (282)
+|.+|...+-.
T Consensus 100 ~~d~Al~~L~~ 110 (145)
T PF09976_consen 100 QYDEALATLQQ 110 (145)
T ss_pred CHHHHHHHHHh
Confidence 99999988733
No 127
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.91 E-value=1.4e+02 Score=30.44 Aligned_cols=165 Identities=14% Similarity=0.141 Sum_probs=96.0
Q ss_pred HHHHHHHHhhhhHHHHhC--CHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHc-cChHHHHHHHHHHHHHHhhCCCc
Q 023407 94 SEVREAHLAKSLFYIQIG--DKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY-MDFDLISKSIDKAKSLFEEGGDW 170 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iG--d~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~-~d~~~v~~~i~kA~~~~e~ggdw 170 (282)
..+-.|+.-+|+|+...| ....+++|...+...-.+..-..-.-|.+=.+-+++ .|.++.+++++||-...+.-+..
T Consensus 4 dAva~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f 83 (629)
T KOG2300|consen 4 DAVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF 83 (629)
T ss_pred hHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH
Confidence 457788999999999999 999999999998866555543333344444444444 68899999999997776653333
Q ss_pred chhhHHHHHH-----------------------------------------HHHHhhcccHHHHHHHhhccccccccccc
Q 023407 171 ERKNRLKVYE-----------------------------------------GLYCMSTRNFKKAASLFLDSISTFTTYEL 209 (282)
Q Consensus 171 ~rrnrLkvy~-----------------------------------------gL~~l~~r~f~~AA~lfld~~~tft~~el 209 (282)
. +-|+.+|. +=-....+||..|.++ |.+-+. .+.++
T Consensus 84 y-dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~el-Lavga~-sAd~~ 160 (629)
T KOG2300|consen 84 Y-DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL-LAVGAE-SADHI 160 (629)
T ss_pred H-hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH-Hhcccc-ccchh
Confidence 2 22222222 2222345677777666 333222 23344
Q ss_pred cCchhHHHHHH-HHHhccCChH--HHHHHccCChhHHHhhcCCchHHHHHHHHhc
Q 023407 210 FPYDTFIFYTV-LTSIISLDRV--SLKQKVVDAPEILTVIGKIPYLSEFLNSLYD 261 (282)
Q Consensus 210 is~~d~a~Y~~-l~aLasl~R~--eLk~kvl~~~e~~~~l~~~P~l~~ll~sfy~ 261 (282)
+.+.-=++++. -.-+.-++|. +.-+-+--..++.+-..+.|.=.+.+.-||-
T Consensus 161 ~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl 215 (629)
T KOG2300|consen 161 CFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYL 215 (629)
T ss_pred hhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Confidence 43333333333 3334455552 2222222335555556677887788777763
No 128
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=68.87 E-value=3.8 Score=40.38 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=58.4
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccc-------c---c-
Q 023407 137 VFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST-------F---T- 205 (282)
Q Consensus 137 ~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t-------f---t- 205 (282)
.+.++|+-++.||+..+..+++.-..-+- |.-..- +..-|-|.+.|+.|+|.+|-+-|++++.. | +
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy-~t~p~c--~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y 314 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIY-GTEPMC--RVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTY 314 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhc-Ccccce--eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 57889999999998887777766555443 222222 23367799999999999999999998742 2 1
Q ss_pred cccccCchhHHHHHHHHH
Q 023407 206 TYELFPYDTFIFYTVLTS 223 (282)
Q Consensus 206 ~~elis~~d~a~Y~~l~a 223 (282)
.++.++-+-=..+..+.-
T Consensus 315 ~~d~inKq~eqm~~llai 332 (525)
T KOG3677|consen 315 QYDMINKQNEQMHHLLAI 332 (525)
T ss_pred hHhhhhhhHHHHHHHHHH
Confidence 345666555555555543
No 129
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=68.52 E-value=27 Score=33.34 Aligned_cols=62 Identities=10% Similarity=0.096 Sum_probs=36.6
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
++..+|..|.+.|++++|+..+.++.+..... ....+.+-.+.+..|++.....++.+|-.+
T Consensus 38 a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~---~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 38 LYADRAQANIKLGNFTEAVADANKAIELDPSL---AKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 45666666667777777777777766544322 223444444555556666666666666554
No 130
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=68.16 E-value=38 Score=36.36 Aligned_cols=68 Identities=21% Similarity=0.151 Sum_probs=56.4
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcc
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 171 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~ 171 (282)
++..||+-|-+.||.++|+.+...+-- -.++.. +++..+-..+-.+|+|....-+-+||=++- +.+|.
T Consensus 175 ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~-e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~ 242 (895)
T KOG2076|consen 175 AYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDY-ELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWE 242 (895)
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCh-HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchH
Confidence 789999999999999999999888654 344444 999999999999999999999999987753 34554
No 131
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=68.05 E-value=69 Score=26.53 Aligned_cols=90 Identities=22% Similarity=0.242 Sum_probs=61.4
Q ss_pred chHHhhHhHhhcCCCCcchhhHHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023407 10 HLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAES-VLEMDQSVLDSMRTKIEDELKKLDDRIADAE 88 (282)
Q Consensus 10 ~~~l~~l~f~~~~~~~~~~~~~~a~~~ll~~ik~~~m~~~Y~~l~~~~-~~~~D~~~~~~~~~~n~~~l~~Le~~lk~~~ 88 (282)
+|-+.=+=|+....-. ...+..+.-++.++.++|+.|=..+.+++ +-..-++=+.+-++..-+++++|+++..-.-
T Consensus 13 HLvfPLLeFl~~~~iy---~~~dl~~akl~LL~~TnMvDy~~d~~~~l~~~~e~p~e~~~kr~~Vl~~l~~l~~~~~~v~ 89 (133)
T PF09440_consen 13 HLVFPLLEFLSDKGIY---DEEDLLKAKLDLLKKTNMVDYAMDLYKELYPDDEVPAELAEKREEVLAELKELEEETEPVL 89 (133)
T ss_pred HHHHHHHHHHhhcccc---cHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445565554322 34688888999999999999888887776 3333345556666677778888888887777
Q ss_pred HhhCHHHHHHHHHh
Q 023407 89 ENLGESEVREAHLA 102 (282)
Q Consensus 89 ~nl~~eeIr~a~~~ 102 (282)
+=+.++++...+..
T Consensus 90 ~~~~~~ev~~~l~~ 103 (133)
T PF09440_consen 90 ELLEDPEVVKNLRS 103 (133)
T ss_pred HHHcCHHHHHHHHc
Confidence 77777777766643
No 132
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=67.24 E-value=88 Score=34.44 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=77.9
Q ss_pred CHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHH-HHhh--CC
Q 023407 92 GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS-LFEE--GG 168 (282)
Q Consensus 92 ~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~-~~e~--gg 168 (282)
.+.+..-|+--+|++|+.+-|...|.+||.+++|--.|.- .-.=....+.....+|..+....-.+-+ .+-. --
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatda---eaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~ 563 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDA---EAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKE 563 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh---hhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHh
Confidence 3566667899999999999999999999999998654321 1223344566667777777555333222 1111 12
Q ss_pred CcchhhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHH
Q 023407 169 DWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLT 222 (282)
Q Consensus 169 dw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~ 222 (282)
.|-+ .|++.+..+++..|...|-.++- ++|+|+=...++.
T Consensus 564 nW~~-------rG~yyLea~n~h~aV~~fQsALR-------~dPkD~n~W~gLG 603 (1238)
T KOG1127|consen 564 NWVQ-------RGPYYLEAHNLHGAVCEFQSALR-------TDPKDYNLWLGLG 603 (1238)
T ss_pred hhhh-------ccccccCccchhhHHHHHHHHhc-------CCchhHHHHHHHH
Confidence 4555 69999999999999999988876 4566665555553
No 133
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=67.23 E-value=7.4 Score=22.39 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.0
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhcc
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESK 126 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~ 126 (282)
+..+-+-|++.|+.++|.+.|.++.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 456677899999999999999998764
No 134
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=67.13 E-value=80 Score=26.97 Aligned_cols=100 Identities=6% Similarity=-0.044 Sum_probs=73.3
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchh
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 173 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rr 173 (282)
++.-+....+|--+++.|++++|.+.|.-+-.+-. .-.+-++++=-+.=-.|+|......-.+|-.+-- . -
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp---~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--d----d 102 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA---WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--D----A 102 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--C----C
Confidence 56677888999999999999999999988553322 2234444444444445788877777777776532 2 3
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 174 NRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 174 nrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.+--.+.|...|..|+...|-+.|-.++.
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45568899999999999999999988765
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=66.51 E-value=13 Score=21.92 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=24.8
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhcccc
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTV 128 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~ 128 (282)
.+..+-.-+.+.|+.+.|...|..+.++-+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 356677888999999999999999887644
No 136
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=66.23 E-value=15 Score=35.75 Aligned_cols=64 Identities=25% Similarity=0.440 Sum_probs=49.8
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcc
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 171 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~ 171 (282)
-.++...+..++.+||.+++++..++... ..+.|+. .--|+.....|.+.++-+++.++. ++|.
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~--------Cf~~YKklkKv~K~les~e~~ie~-~~~t 286 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL--------CFPFYKKLKKVVKSLESAEQAIEE-KHWT 286 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh--------HHHHHHHHHHHHHHHHHHHHHHhh-hhHH
Confidence 46899999999999999999998888775 5567764 233556677788888888888875 6663
No 137
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=65.82 E-value=41 Score=29.10 Aligned_cols=65 Identities=9% Similarity=0.115 Sum_probs=52.6
Q ss_pred CchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHH
Q 023407 129 AVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKA 193 (282)
Q Consensus 129 s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~A 193 (282)
...-.+.++++.+-+++..++...+...+++.+.+.....+---|..++.|+|++....|+-+.+
T Consensus 123 ~~~~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g~~~~~ 187 (220)
T TIGR01716 123 YRRRVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEGQKESG 187 (220)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcCCCccc
Confidence 34456788999999999999999999999999998853234446899999999999888875444
No 138
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=65.80 E-value=1e+02 Score=27.72 Aligned_cols=58 Identities=7% Similarity=-0.088 Sum_probs=50.7
Q ss_pred hhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHH
Q 023407 102 AKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDK 159 (282)
Q Consensus 102 ~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~k 159 (282)
..|.||.+.|.+..|+.-+..+.+.=.++.+.-+....+++.....|..+..++....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6799999999999999999998887778888899999999998899988887776543
No 139
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=65.62 E-value=74 Score=34.93 Aligned_cols=51 Identities=14% Similarity=0.022 Sum_probs=26.7
Q ss_pred HhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 109 QIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 109 ~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
+.|+.++|+.+|.++.+...+ .+...++-.+..-.|+++.......+|-.+
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS----ANAYVARATIYRQRHNVPAAVSDLRAALEL 638 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 336666666666665544332 234444445555555655555555555443
No 140
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=65.45 E-value=20 Score=24.89 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=30.7
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDL 136 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~ 136 (282)
|+.+.-+|-=+++.||+++|.+....+.+.-....+-..+
T Consensus 1 Rd~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 1 RDCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred ChhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 6677778888899999999999999988776666665543
No 141
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=65.37 E-value=24 Score=36.10 Aligned_cols=117 Identities=20% Similarity=0.209 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHc
Q 023407 69 MRTKIEDELKKLDDRI-ADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY 147 (282)
Q Consensus 69 ~~~~n~~~l~~Le~~l-k~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~ 147 (282)
++..+..+|=-|-.+| +.+=+ .--.|...|-||.-||...+|.+.|.|+- .||=.|.=-.+|+-+
T Consensus 289 ~el~~~n~Lf~lsh~LV~~yP~------~a~sW~aVg~YYl~i~k~seARry~SKat--------~lD~~fgpaWl~fgh 354 (611)
T KOG1173|consen 289 YELGKSNKLFLLSHKLVDLYPS------KALSWFAVGCYYLMIGKYSEARRYFSKAT--------TLDPTFGPAWLAFGH 354 (611)
T ss_pred HHhcccchHHHHHHHHHHhCCC------CCcchhhHHHHHHHhcCcHHHHHHHHHHh--------hcCccccHHHHHHhH
Confidence 3444455555555555 22222 23359999999999999999999999853 123333333444322
Q ss_pred -----cChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccccc
Q 023407 148 -----MDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFT 205 (282)
Q Consensus 148 -----~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft 205 (282)
+..+...+...+|-++.. |.-.. ..|.|+.++...+++-|-+-|..+.+-++
T Consensus 355 sfa~e~EhdQAmaaY~tAarl~~--G~hlP----~LYlgmey~~t~n~kLAe~Ff~~A~ai~P 411 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARLMP--GCHLP----SLYLGMEYMRTNNLKLAEKFFKQALAIAP 411 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHhcc--CCcch----HHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 566666777777777765 32222 47999999999999999999999876443
No 142
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=64.85 E-value=89 Score=26.67 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=20.7
Q ss_pred HHccCChhHHHhhcCCchHHHHHHHHhcCChhHHHHHH
Q 023407 234 QKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAF 271 (282)
Q Consensus 234 ~kvl~~~e~~~~l~~~P~l~~ll~sfy~~~Y~~~~~~L 271 (282)
..+..+|.|+- ..++..++-+++|..||..+
T Consensus 127 ~~~~~~~~i~~-------al~l~~a~~~gny~~ff~l~ 157 (204)
T PF03399_consen 127 SEILSSPYIQF-------ALELCRALMEGNYVRFFRLY 157 (204)
T ss_dssp HHHHTSHHHHH-------HHHHHHHH--TTHHHHHHHH
T ss_pred hhhhcCHHHHH-------HHHHHHHHHcCCHHHHHHHH
Confidence 33556666654 34667889999999999888
No 143
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=64.80 E-value=36 Score=31.65 Aligned_cols=96 Identities=19% Similarity=0.278 Sum_probs=69.2
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh-------------
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE------------- 166 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~------------- 166 (282)
..-.|..|...|+.+.|++...+. ..+++..-.|.+.+-.+..+...+.+.+.++.-|.
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l 176 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 355677788899999999876542 44788888889999999999999999888754332
Q ss_pred --CCCc---------------chhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 167 --GGDW---------------ERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 167 --ggdw---------------~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
|||- .....+....++..|..|+|.+|-+.+.+++.-
T Consensus 177 ~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5431 122455556678899999999999999888653
No 144
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=63.84 E-value=57 Score=34.34 Aligned_cols=112 Identities=9% Similarity=-0.042 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhcccc-CchhHHHHHHHHHHHHHHccChHHH
Q 023407 75 DELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTV-AVGQKMDLVFYTLQLGFFYMDFDLI 153 (282)
Q Consensus 75 ~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~-s~~~~id~~l~~irv~~~~~d~~~v 153 (282)
+.+.++..-..+|-.+ -+++.-||+-..+.|.+++|...+.++.+.+. ..+-.+++...+.|.. ++
T Consensus 70 ~~~~~~~~~~~~~~~~------~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~-------~~ 136 (694)
T PRK15179 70 AALPELLDYVRRYPHT------ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ-------GI 136 (694)
T ss_pred hhHHHHHHHHHhcccc------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc-------cH
Confidence 3444444444444431 46788899999999999999999999888774 4555666655555543 55
Q ss_pred HHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 154 SKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 154 ~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
..-+..+++.++. ++++. -.....|..+...|.|.+|-.+|=+++.
T Consensus 137 eeA~~~~~~~l~~--~p~~~-~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 137 EAGRAEIELYFSG--GSSSA-REILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HHHHHHHHHHhhc--CCCCH-HHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 5556666666653 33332 2334556667777777777777766653
No 145
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=63.56 E-value=20 Score=24.56 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=26.7
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccC
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVA 129 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s 129 (282)
..++..+|..|.+.|+.++|.+.+.++......
T Consensus 25 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 25 PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 344567899999999999999999998876655
No 146
>PF12854 PPR_1: PPR repeat
Probab=63.41 E-value=12 Score=23.13 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=21.7
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHh
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVT 123 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~ 123 (282)
.+..+-+=||+.|+.++|.+.+.++
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4667778899999999999999876
No 147
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=62.95 E-value=78 Score=25.34 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=69.4
Q ss_pred HHHHHHHHhc-C--C-CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHH
Q 023407 48 SFYETLVAES-V--L-EM-DQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKV 122 (282)
Q Consensus 48 ~~Y~~l~~~~-~--~-~~-D~~~~~~~~~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~ 122 (282)
..|+..+.-+ | + .. +..|+.......... ...+...+++++...|+.+.|++.+.+
T Consensus 27 ~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~-------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 27 ELLEEALALYRGDFLPDLDDEEWVEPERERLREL-------------------YLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHH-------------------HHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4455555544 2 2 11 248888766543332 345677889999999999999999999
Q ss_pred hhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh--CCCcch
Q 023407 123 TESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE--GGDWER 172 (282)
Q Consensus 123 ~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~--ggdw~r 172 (282)
+........ .++..+||.-.-.|+...+.....+....+.+ |.+++.
T Consensus 88 ~l~~dP~~E---~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 88 ALALDPYDE---EAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHSTT-H---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHhcCCCCH---HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 886555433 46788999999999999999999999888764 555543
No 148
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=62.34 E-value=1.3e+02 Score=27.78 Aligned_cols=107 Identities=18% Similarity=0.139 Sum_probs=54.1
Q ss_pred HHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 023407 85 ADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (282)
Q Consensus 85 k~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~ 164 (282)
..+..|=++.|| ..++.=+...||-..++....+...+.++..... ...++.-+-.||+......+.||-.+-
T Consensus 58 ~~~~~~p~d~~i----~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll---~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 58 AAVLRNPEDLSI----AKLATALYLRGDADSSLAVLQKSAIAYPKDRELL---AAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHhcCcchHHH----HHHHHHHHhcccccchHHHHhhhhccCcccHHHH---HHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 444455555555 3344445555665566655555333322222111 114444455566666666666665543
Q ss_pred hhCCCcchhhHHHHH------------------------------HHHHHhhcccHHHHHHHhhcc
Q 023407 165 EEGGDWERKNRLKVY------------------------------EGLYCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 165 e~ggdw~rrnrLkvy------------------------------~gL~~l~~r~f~~AA~lfld~ 200 (282)
-.||+..|=+.+. -|+.++-.||++.|..+|+..
T Consensus 131 --p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 131 --PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred --CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 2455433221111 266666777777777777665
No 149
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=61.40 E-value=75 Score=24.65 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=15.4
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccc
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKT 127 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~ 127 (282)
.+.+..+|..|...|+++.|++.|.++.+.+
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3344445555555555555555555544443
No 150
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.29 E-value=13 Score=24.89 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=23.0
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhc
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTES 125 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e 125 (282)
.+++|.-|.++||.+.|.+...+..+
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 46899999999999999999988774
No 151
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=59.97 E-value=39 Score=33.52 Aligned_cols=130 Identities=17% Similarity=0.176 Sum_probs=82.2
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCC---CcchhhHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG---DWERKNRL 176 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~gg---dw~rrnrL 176 (282)
....+.|+-+.|-.+.|+. .++.+.|++| +++..||.+... ++..+.. -|.+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~-------~~~D~~~rFe-------LAl~lg~L~~A~-------~~a~~~~~~~~W~~---- 352 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQ-------FVTDPDHRFE-------LALQLGNLDIAL-------EIAKELDDPEKWKQ---- 352 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHH-------HSS-HHHHHH-------HHHHCT-HHHHH-------HHCCCCSTHHHHHH----
T ss_pred HHHHHHHHHHCCCHHHHHh-------hcCChHHHhH-------HHHhcCCHHHHH-------HHHHhcCcHHHHHH----
Confidence 5678999999999988876 5788899998 455566654433 3332211 2333
Q ss_pred HHHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhccCChHHHHHHccCChhHHHhhcCCchHHHHH
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFL 256 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLasl~R~eLk~kvl~~~e~~~~l~~~P~l~~ll 256 (282)
.|=..|.+|+++-|-+.|..+- +|+ -+. |..+++=++..|+ ++.+-.+.+. -....+.
T Consensus 353 ---Lg~~AL~~g~~~lAe~c~~k~~-d~~--------~L~----lLy~~~g~~~~L~-kl~~~a~~~~-----~~n~af~ 410 (443)
T PF04053_consen 353 ---LGDEALRQGNIELAEECYQKAK-DFS--------GLL----LLYSSTGDREKLS-KLAKIAEERG-----DINIAFQ 410 (443)
T ss_dssp ---HHHHHHHTTBHHHHHHHHHHCT--HH--------HHH----HHHHHCT-HHHHH-HHHHHHHHTT------HHHHHH
T ss_pred ---HHHHHHHcCCHHHHHHHHHhhc-Ccc--------ccH----HHHHHhCCHHHHH-HHHHHHHHcc-----CHHHHHH
Confidence 3567789999999999998873 232 121 2344455677775 4444333332 3455889
Q ss_pred HHHhcCChhHHHHHHHHhhh
Q 023407 257 NSLYDCQYKSFFSAFGEKRS 276 (282)
Q Consensus 257 ~sfy~~~Y~~~~~~L~~~~~ 276 (282)
.+|+-+++..|.+.|.+...
T Consensus 411 ~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 411 AALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHcCCHHHHHHHHHHcCC
Confidence 99999999999999987644
No 152
>PRK12798 chemotaxis protein; Reviewed
Probab=59.15 E-value=38 Score=33.41 Aligned_cols=86 Identities=10% Similarity=0.089 Sum_probs=68.7
Q ss_pred CchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccccccccc
Q 023407 129 AVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYE 208 (282)
Q Consensus 129 s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~e 208 (282)
.+..+.+++|.+-|-++.-|+.....--.+||..+.+ .+.....+.+.|.|...+..-++.+|.+.+-.... .
T Consensus 252 d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~--~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~-----~ 324 (421)
T PRK12798 252 DPERQRELYLRIARAALIDGKTELARFASERALKLAD--PDSADAARARLYRGAALVASDDAESALEELSQIDR-----D 324 (421)
T ss_pred CchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcc--CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh-----h
Confidence 4566788999999999999999999999999999985 35556788999999999999999999887766532 2
Q ss_pred ccCchhHHHHHHH
Q 023407 209 LFPYDTFIFYTVL 221 (282)
Q Consensus 209 lis~~d~a~Y~~l 221 (282)
-+++.|...-..-
T Consensus 325 ~L~~~Dr~Ll~AA 337 (421)
T PRK12798 325 KLSERDRALLEAA 337 (421)
T ss_pred hCChhhHHHHHHH
Confidence 2556666554433
No 153
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.42 E-value=29 Score=34.00 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=45.8
Q ss_pred HhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHH
Q 023407 89 ENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (282)
Q Consensus 89 ~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA 160 (282)
.|+++||=-...+-+|.-|+.-||+++|+..|.-+.++.+.++ .+++.| .=.-++.|.+...+...+||
T Consensus 49 ~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~-el~vnL--Acc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 49 LNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA-ELGVNL--ACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred hccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc-ccchhH--HHHHHHHHHHHHHHHHHhhC
Confidence 3666666666677789999999999999999999887554443 344433 33445556655544444443
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=58.11 E-value=44 Score=30.64 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHH
Q 023407 78 KKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSI 157 (282)
Q Consensus 78 ~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i 157 (282)
.=+|.-+|.+-. +.++...| .+|..++||.++|-..|.++........+.-.++-.+|+.-.-+||...|.+.-
T Consensus 57 ~Ife~glk~f~~---~~~~~~~Y---~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 57 KIFERGLKKFPS---DPDFWLEY---LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp HHHHHHHHHHTT----HHHHHHH---HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHHHHHCCC---CHHHHHHH---HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 334444544333 34565555 489999999999999999999886666657788999999999999999999999
Q ss_pred HHHHHHHhh
Q 023407 158 DKAKSLFEE 166 (282)
Q Consensus 158 ~kA~~~~e~ 166 (282)
.++.+....
T Consensus 131 ~R~~~~~~~ 139 (280)
T PF05843_consen 131 KRAEELFPE 139 (280)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHhhh
Confidence 999888753
No 155
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.10 E-value=21 Score=26.64 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=32.7
Q ss_pred HHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Q 023407 108 IQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 108 ~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e 165 (282)
=..|.+++|++.|..+.++|... +=+..-..||--+ ......|+++|+.+-+
T Consensus 17 D~~gny~eA~~lY~~ale~~~~e--kn~~~k~~i~~K~----~~~a~~yl~RAE~Lk~ 68 (75)
T cd02680 17 DEKGNAEEAIELYTEAVELCINT--SNETMDQALQTKL----KQLARQALDRAEALKE 68 (75)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHh--cChhhHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 37899999999999999999762 2222333333111 0123477777777654
No 156
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=56.85 E-value=63 Score=31.69 Aligned_cols=96 Identities=9% Similarity=0.052 Sum_probs=61.1
Q ss_pred HhhhhHHHHhCCHHHHHHHHHHhh---ccccCch---------hHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCC
Q 023407 101 LAKSLFYIQIGDKEKALEQLKVTE---SKTVAVG---------QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG 168 (282)
Q Consensus 101 ~~la~~~~~iGd~~~A~k~y~~~~---e~~~s~~---------~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~gg 168 (282)
...|++|++-|.+..|.+.|.++. +||.+.. -++-..+|+.-+-+-+++|.....+.+++ ++-+.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv---Le~~~ 288 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV---LELDP 288 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH---HhcCC
Confidence 357999999999999999999954 4554432 23334455555555556666555554444 33211
Q ss_pred CcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 169 DWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 169 dw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
+ ..|--.-.|-+++..++|..|-..|..++-
T Consensus 289 ~---N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 289 N---NVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred C---chhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 1 122233357788888888888888888754
No 157
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=55.97 E-value=2.4e+02 Score=30.77 Aligned_cols=173 Identities=14% Similarity=0.126 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccC-chhHHHHHHHHHHHHHHccChHHHHHHH
Q 023407 79 KLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA-VGQKMDLVFYTLQLGFFYMDFDLISKSI 157 (282)
Q Consensus 79 ~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s-~~~~id~~l~~irv~~~~~d~~~v~~~i 157 (282)
.|..-++-.+...|..-+-..+.++-++|.+..|++.+++.+..+.++-++ ...+.++..+.- + -++|+++...++
T Consensus 205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~-kY~~~~~~ee~l 281 (906)
T PRK14720 205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--E-KYKDHSLLEDYL 281 (906)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--H-HccCcchHHHHH
Confidence 333333333455667778888999999999999999999999999999654 444455444433 2 245666666666
Q ss_pred HHHHHHHhhCCCcch-hhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCch--------------hHHHHHHHH
Q 023407 158 DKAKSLFEEGGDWER-KNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYD--------------TFIFYTVLT 222 (282)
Q Consensus 158 ~kA~~~~e~ggdw~r-rnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~--------------d~a~Y~~l~ 222 (282)
.... -+..|.. .-=+.-++=...+..|+| .|.. +++..+++|.+ ++.+=..+.
T Consensus 282 ~~s~----l~~~~~~~~~~i~~fek~i~f~~G~y-----v~H~---~WGvG~I~~v~~~~i~IdF~~k~gh~ms~~~A~~ 349 (906)
T PRK14720 282 KMSD----IGNNRKPVKDCIADFEKNIVFDTGNF-----VYHR---TWGVGKITSISDNGIFVDFVSKRGHKLSIQMAIT 349 (906)
T ss_pred HHhc----cccCCccHHHHHHHHHHHeeecCCCE-----EEEc---CCCCceeeEEcCCceEEEeccCCCCcCCHHHHHH
Confidence 5432 2233322 222222333344445544 2222 34444444443 455667899
Q ss_pred HhccCChHHHHH-HccCCh-hHHHhhcCCch--HHHHHHHHhc-CChhH
Q 023407 223 SIISLDRVSLKQ-KVVDAP-EILTVIGKIPY--LSEFLNSLYD-CQYKS 266 (282)
Q Consensus 223 aLasl~R~eLk~-kvl~~~-e~~~~l~~~P~--l~~ll~sfy~-~~Y~~ 266 (282)
+|-.++|..+.. |...+| ++...+...|. ++.+|.+|-+ +.-+.
T Consensus 350 sL~pL~~dHi~v~k~~~~~~~l~~~~~~dp~~~ik~~lks~~~~~t~~~ 398 (906)
T PRK14720 350 ALKPLKRDHIWVLKAVEPKEELVDKFKKDIPWALKTIIKSYDNRMDLKD 398 (906)
T ss_pred hcCcCChhheehhHhhCCHHHHHHHHHhCHHHHHHHHHHhcCCccCHHH
Confidence 999999999887 665554 45566666664 8889999876 54433
No 158
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=55.90 E-value=32 Score=29.93 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=37.2
Q ss_pred HHHhhhh-HHHHhCC--HHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Q 023407 99 AHLAKSL-FYIQIGD--KEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 99 a~~~la~-~~~~iGd--~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e 165 (282)
.+..+|. +|.+.|+ .++|.+.+.++...-... .+..+.+--..+..||++....+.+++-.+.-
T Consensus 109 ~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~---~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 109 LYAALATVLYYQAGQHMTPQTREMIDKALALDANE---VTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455566 3456565 367777777766433222 23445555555666777777777777666553
No 159
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=55.09 E-value=72 Score=33.84 Aligned_cols=99 Identities=19% Similarity=0.160 Sum_probs=61.5
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHH-HHHHHHHHH-----------ccChHHHHHHHHHHHHHHhhC
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLV-FYTLQLGFF-----------YMDFDLISKSIDKAKSLFEEG 167 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~-l~~irv~~~-----------~~d~~~v~~~i~kA~~~~e~g 167 (282)
+.-.|+.|.+.|.-++|.-|..++..-|...-.+..|. +...+-|.+ .=|..||..-...|+-+.+.|
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 44677888888888888877777776554444444443 222221211 136667777777777777654
Q ss_pred CCcchhhHHH----------------H--HHHHHHhhcccHHHHHHHhhccc
Q 023407 168 GDWERKNRLK----------------V--YEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 168 gdw~rrnrLk----------------v--y~gL~~l~~r~f~~AA~lfld~~ 201 (282)
+ +|++-+ + |.|--....|+++.|+++|.-++
T Consensus 733 -~--~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 733 -S--PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred -C--cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 2 222222 2 34556678999999999998774
No 160
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=54.13 E-value=79 Score=25.61 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=38.5
Q ss_pred HHHHHHHHhhccccCchhHHHHHH-------HHHHHHHHccChHHHHHHHHHHHHHHhh
Q 023407 115 KALEQLKVTESKTVAVGQKMDLVF-------YTLQLGFFYMDFDLISKSIDKAKSLFEE 166 (282)
Q Consensus 115 ~A~k~y~~~~e~~~s~~~~id~~l-------~~irv~~~~~d~~~v~~~i~kA~~~~e~ 166 (282)
++...|.+..--+.+|.+.+-|++ ...+.++.-+|+.....++.||..++.+
T Consensus 5 ~~~~~Y~~~~v~tasp~~Li~mLydg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~e 63 (124)
T TIGR00208 5 NPYQAYQQNSVNTASPGELTLMLYNGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQE 63 (124)
T ss_pred HHHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 467888888777788888887754 3444566678888888888888887753
No 161
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=53.29 E-value=24 Score=34.67 Aligned_cols=80 Identities=15% Similarity=0.041 Sum_probs=54.3
Q ss_pred hhccccCchhHHHHHH---HHHHHHHHccChHHHHHHHHHHHHHHhhC---CCcchhhHHHHHHHHHHhhcccHHHHHHH
Q 023407 123 TESKTVAVGQKMDLVF---YTLQLGFFYMDFDLISKSIDKAKSLFEEG---GDWERKNRLKVYEGLYCMSTRNFKKAASL 196 (282)
Q Consensus 123 ~~e~~~s~~~~id~~l---~~irv~~~~~d~~~v~~~i~kA~~~~e~g---gdw~rrnrLkvy~gL~~l~~r~f~~AA~l 196 (282)
+-++..++-.++==+| .++||-...||+....+-++-.+--. +| ......-.+-=|-|.+.|+.|.|..|.+.
T Consensus 108 ~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~-~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~ 186 (404)
T PF10255_consen 108 AGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNK-KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRT 186 (404)
T ss_pred hcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCccc-chhhccCcchheehHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666655444 46799999999998877665443311 11 11222344556779999999999999999
Q ss_pred hhccccc
Q 023407 197 FLDSIST 203 (282)
Q Consensus 197 fld~~~t 203 (282)
|..++..
T Consensus 187 f~~iL~y 193 (404)
T PF10255_consen 187 FSQILLY 193 (404)
T ss_pred HHHHHHH
Confidence 9998643
No 162
>PRK05685 fliS flagellar protein FliS; Validated
Probab=53.05 E-value=78 Score=25.87 Aligned_cols=52 Identities=10% Similarity=0.194 Sum_probs=35.6
Q ss_pred HHHHHHHH----hhccccCchhHHHHHH-------HHHHHHHHccChHHHHHHHHHHHHHHhh
Q 023407 115 KALEQLKV----TESKTVAVGQKMDLVF-------YTLQLGFFYMDFDLISKSIDKAKSLFEE 166 (282)
Q Consensus 115 ~A~k~y~~----~~e~~~s~~~~id~~l-------~~irv~~~~~d~~~v~~~i~kA~~~~e~ 166 (282)
+|.+.|.+ ..--+.++.+.+-|++ ...+.++.-+|+.....++.||..++.+
T Consensus 5 ~~~~~Y~~~~~~~~v~tasp~~Li~mLydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~e 67 (132)
T PRK05685 5 NAYQAYQQVSVESQVSSASPHKLIQMLYEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIING 67 (132)
T ss_pred hHHHHHHhccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 46677877 5555667777666643 3334567778888888888888887754
No 163
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=52.92 E-value=9 Score=29.60 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=18.6
Q ss_pred HHHHHHccCChhHHHhhcCC-chH
Q 023407 230 VSLKQKVVDAPEILTVIGKI-PYL 252 (282)
Q Consensus 230 ~eLk~kvl~~~e~~~~l~~~-P~l 252 (282)
.++++.|+.+|+|++||... |.|
T Consensus 22 ~~l~~~vl~dp~V~~Fl~~h~~eL 45 (94)
T PF07319_consen 22 EQLKQEVLSDPEVQAFLQEHQPEL 45 (94)
T ss_dssp HHHHHHHTT-HHHHHHHHHSTTT-
T ss_pred HHHHHHHHcCHHHHHHHHHhHHhc
Confidence 56889999999999999987 764
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=52.36 E-value=25 Score=30.03 Aligned_cols=54 Identities=15% Similarity=0.072 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhh-CHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccc
Q 023407 74 EDELKKLDDRIADAEENL-GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKT 127 (282)
Q Consensus 74 ~~~l~~Le~~lk~~~~nl-~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~ 127 (282)
-+.+.+++.-|.-|..-. .+-+=-..+...|.=|...|+.+.|.++|..+...|
T Consensus 79 ~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 79 CQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 334445555555554210 011113456677888888888888888888888777
No 165
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=52.10 E-value=27 Score=26.05 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=23.4
Q ss_pred HHHHHHHhhhhHHHHhCCHHHHHHHHHHhh
Q 023407 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTE 124 (282)
Q Consensus 95 eIr~a~~~la~~~~~iGd~~~A~k~y~~~~ 124 (282)
+...+|..=|.||.+.||..+|+.++.=+.
T Consensus 33 ~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~ 62 (75)
T PF04010_consen 33 EMAESYLEDGKYFLEKGDYVNALACFSYAH 62 (75)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344568888999999999999999986543
No 166
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.60 E-value=1.1e+02 Score=32.57 Aligned_cols=156 Identities=13% Similarity=0.087 Sum_probs=89.4
Q ss_pred CCCcchHHhhHhHhhcCCCCcchhhHHHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHH
Q 023407 6 TQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESV-----LEMDQSVLDSMRTKIEDELKKL 80 (282)
Q Consensus 6 ~~~p~~~l~~l~f~~~~~~~~~~~~~~a~~~ll~~ik~~~m~~~Y~~l~~~~~-----~~~D~~~~~~~~~~n~~~l~~L 80 (282)
+.+|+++.+...|-=+.+.+ ...++.+.-++ ...+-+.+-.+++ ..+++...+-+.--+.++.++|
T Consensus 636 ~r~~~lk~~a~~~a~sk~~s---~e~ka~ed~~k------Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql 706 (829)
T KOG2280|consen 636 GRIPALKTAANAFAKSKEKS---FEAKALEDQMK------LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQL 706 (829)
T ss_pred ccchhHHHHHHHHhhhhhhh---hHHHHHHHHHH------HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHH
Confidence 45677777666663222211 22223332222 2334444444543 5566666665555555666666
Q ss_pred HHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHH
Q 023407 81 DDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (282)
Q Consensus 81 e~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA 160 (282)
..+-+--+ ++-+.-+..=+..++|+++=.+ |.+.+.- ..| +.-.+..++-.||....++|+.|.
T Consensus 707 ~~~Fkipd--------Kr~~wLk~~aLa~~~kweeLek-fAkskks--PIG-----y~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 707 KSDFKIPD--------KRLWWLKLTALADIKKWEELEK-FAKSKKS--PIG-----YLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHhcCCcc--------hhhHHHHHHHHHhhhhHHHHHH-HHhccCC--CCC-----chhHHHHHHhcccHHHHhhhhhcc
Confidence 55554211 2333344555677888876544 4444332 233 345677888899999999999998
Q ss_pred HHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcc
Q 023407 161 KSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 161 ~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~ 200 (282)
..+.|+ +-+.+..|+|++||++=.+.
T Consensus 771 ~~l~ek--------------v~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 771 GGLQEK--------------VKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred CChHHH--------------HHHHHHhccHHHHHHHHHHh
Confidence 877642 33567889999999875543
No 167
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=51.36 E-value=2e+02 Score=26.39 Aligned_cols=65 Identities=11% Similarity=-0.060 Sum_probs=49.3
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHH
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA 160 (282)
...++..+|..|+..||+++|+..|.+....-......-|..+.+..+....||+....+..+++
T Consensus 179 a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 179 QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678888888888888888888888877655666677777777777777777777777766654
No 168
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=51.02 E-value=1.5e+02 Score=25.10 Aligned_cols=102 Identities=14% Similarity=0.247 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHh
Q 023407 35 GEVFSMVKAHDMASFYETLVAESV-LEMDQSVLDSM---RTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQI 110 (282)
Q Consensus 35 ~~ll~~ik~~~m~~~Y~~l~~~~~-~~~D~~~~~~~---~~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~i 110 (282)
+.++...+..+.=.||+.--.+-. ...-.+..+.. ....++++++.+.+.+.+++. .
T Consensus 29 ea~~~q~~AsdqWa~YQAKsiK~~l~e~~~~~l~~~~~~~~~~~~~i~~Y~~~~~~~~~e-------------------~ 89 (157)
T PF14235_consen 29 EAVIAQAEASDQWAYYQAKSIKQHLAELAADLLELELAARAAYQKKIARYKKEKARYKSE-------------------A 89 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHH-------------------H
Confidence 446677777788889987544321 11111111111 455556666666666655553 3
Q ss_pred CCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHH
Q 023407 111 GDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISK 155 (282)
Q Consensus 111 Gd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~ 155 (282)
.+++.--+..+..+|.-.-..|++|+...++.|||-+.-...+.+
T Consensus 90 ~~l~~~A~~~e~~~d~~~~~~~~f~~a~~~lQIaI~Lasit~Lt~ 134 (157)
T PF14235_consen 90 EELEAKAKEAEAESDHALHHHHRFDLAVALLQIAIVLASITALTK 134 (157)
T ss_pred HHHHHHHHHHHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566777888888899999999999999998877666654
No 169
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.71 E-value=57 Score=26.19 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHH
Q 023407 73 IEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYT 140 (282)
Q Consensus 73 n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~ 140 (282)
-+++.++|+.-+...++.-+-. ---.|-.||-.|..+|+.+.|++-|..-..--.-++.-||..+.-
T Consensus 49 ~e~Q~~~le~~~ek~~ak~~~v-pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLmk~ 115 (121)
T COG4259 49 KEAQTAALEKYLEKIGAKNGAV-PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLMKN 115 (121)
T ss_pred HHHHHHHHHHHHHHHhhcCCCC-CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHHHc
Confidence 4556667777665544322210 012477799999999999999999977554446667777776653
No 170
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=49.70 E-value=2e+02 Score=26.13 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=36.3
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLG 144 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~ 144 (282)
+..-|+-+++-||+++|...|.++.+-|.+...+.--+|..=|-+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraa 142 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAA 142 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHH
Confidence 445588899999999999999999999998888776555444443
No 171
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.66 E-value=2.2e+02 Score=29.53 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHh----------------------------hccc
Q 023407 76 ELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVT----------------------------ESKT 127 (282)
Q Consensus 76 ~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~----------------------------~e~~ 127 (282)
++.++|.-|+.++ .-+-.-+....-.|.++++-|++++|++.|... -.-.
T Consensus 91 rlnk~Dealk~~~--~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 91 RLNKLDEALKTLK--GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred HcccHHHHHHHHh--cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Q ss_pred cCchhHHHHHHHHHHHHHHccChHHHHHHHHHH----HHHHhhCCCcchh-----hHHHHHHHHHHhhcccHHHHHHHhh
Q 023407 128 VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA----KSLFEEGGDWERK-----NRLKVYEGLYCMSTRNFKKAASLFL 198 (282)
Q Consensus 128 ~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA----~~~~e~ggdw~rr-----nrLkvy~gL~~l~~r~f~~AA~lfl 198 (282)
..+...-|.+||..=+-+..|+|......+.+| ...++.|.+-+-- |-.++=.+-.+...|+-.+|....-
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Q ss_pred ccc
Q 023407 199 DSI 201 (282)
Q Consensus 199 d~~ 201 (282)
+++
T Consensus 249 ~~i 251 (652)
T KOG2376|consen 249 DII 251 (652)
T ss_pred HHH
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=49.47 E-value=1.7e+02 Score=25.19 Aligned_cols=120 Identities=14% Similarity=0.071 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHH--------HhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHH
Q 023407 74 EDELKKLDDRIADAE--------ENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGF 145 (282)
Q Consensus 74 ~~~l~~Le~~lk~~~--------~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~ 145 (282)
+.+.+++.+.|.++- -..+.++.-.+....|--+++.|++++|.+.|.-..-|-... -+-++.+--+.=
T Consensus 6 ~~~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n---~~Y~~GLaa~~Q 82 (165)
T PRK15331 6 NVSEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN---PDYTMGLAAVCQ 82 (165)
T ss_pred hhhHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHH
Confidence 344445555554443 234567888899999999999999999999998854333322 223444444444
Q ss_pred HccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 146 FYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 146 ~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
..++|......-..|-.+-. .|+ |--.|.|.-.|..|+-..|-..|-.++.
T Consensus 83 ~~k~y~~Ai~~Y~~A~~l~~--~dp----~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 83 LKKQFQKACDLYAVAFTLLK--NDY----RPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHHHHHHccc--CCC----CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 44566555555555544322 233 3358889999999999999998877754
No 173
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=49.17 E-value=2.6e+02 Score=27.16 Aligned_cols=113 Identities=22% Similarity=0.275 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh------CHHHHHHHHHhhhhHHHHhCCHH-HHHHHHHHhhccccCchhHHHHHH
Q 023407 66 LDSMRTKIEDELKKLDDRIADAEENL------GESEVREAHLAKSLFYIQIGDKE-KALEQLKVTESKTVAVGQKMDLVF 138 (282)
Q Consensus 66 ~~~~~~~n~~~l~~Le~~lk~~~~nl------~~eeIr~a~~~la~~~~~iGd~~-~A~k~y~~~~e~~~s~~~~id~~l 138 (282)
++.+-...+.++.+|+.+|.....+. +.+++..+...+.+.+.+|.+.. .|-+ |-..+-+||=
T Consensus 23 ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~----------sE~~V~~it~ 92 (383)
T PF04100_consen 23 LDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEE----------SEQMVQEITR 92 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 55666777778888888887655333 45667778888888888887654 2322 2233445555
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHH-HHhhcccHHHHHHHhhcc
Q 023407 139 YTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGL-YCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 139 ~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL-~~l~~r~f~~AA~lfld~ 200 (282)
.+=++...-.|.....+.+.+..-++. ++.-| ..+..|+|+++|.++--+
T Consensus 93 dIk~LD~AKrNLT~SIT~LkrL~MLv~------------a~~qL~~~~~~r~Y~e~a~~L~av 143 (383)
T PF04100_consen 93 DIKQLDNAKRNLTQSITTLKRLQMLVT------------AVEQLKELAKKRQYKEIASLLQAV 143 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666555555555555555555543 22332 244578999998888665
No 174
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=48.78 E-value=72 Score=28.46 Aligned_cols=79 Identities=14% Similarity=0.205 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHH---------HhhCHHHHHH---------------HHHhhhhHHHHhCCHHHHHHHHHHhhcccc
Q 023407 73 IEDELKKLDDRIADAE---------ENLGESEVRE---------------AHLAKSLFYIQIGDKEKALEQLKVTESKTV 128 (282)
Q Consensus 73 n~~~l~~Le~~lk~~~---------~nl~~eeIr~---------------a~~~la~~~~~iGd~~~A~k~y~~~~e~~~ 128 (282)
..+++++|..+.+.-+ ++.|+++-+. -...+|-||.+. |.++|+..+-++.+-..
T Consensus 93 s~~~l~~L~~~tk~S~dP~llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr-D~~Kt~~ll~~~L~l~~ 171 (203)
T PF11207_consen 93 SYQELERLQEETKNSQDPYLLYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYTKR-DPEKTIQLLLRALELSN 171 (203)
T ss_pred HHHHHHHHHHHHccCCCccHHHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcC
Confidence 3466777777776433 3334443333 345667777755 77777777777776554
Q ss_pred Cc-hhHHHHHHHHHHHHHHccChHH
Q 023407 129 AV-GQKMDLVFYTLQLGFFYMDFDL 152 (282)
Q Consensus 129 s~-~~~id~~l~~irv~~~~~d~~~ 152 (282)
.. .--.|+..+++-+..-.+++.+
T Consensus 172 ~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 172 PDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CCCCCCHHHHHHHHHHHHHhcchhh
Confidence 44 4455666666666665555543
No 175
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=47.76 E-value=1.1e+02 Score=28.82 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=63.4
Q ss_pred hhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhC--CCcchh
Q 023407 102 AKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG--GDWERK 173 (282)
Q Consensus 102 ~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~g--gdw~rr 173 (282)
+-|.-..+.|.++.|++.....+..++++.+++-.-|...|++...|-.......+....+.++.- .+||.-
T Consensus 218 ~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~~L~~WEP~ 291 (301)
T TIGR03362 218 EEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQQLGLAEWEPA 291 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCccccChH
Confidence 335666788999999999999999999999999999999999999999999999999998888753 488853
No 176
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=47.45 E-value=1.2e+02 Score=25.47 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=37.3
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhh-ccccCchhHHHHHHHHHHHHHHccC
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTE-SKTVAVGQKMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~-e~~~s~~~~id~~l~~irv~~~~~d 149 (282)
..+.++++.-|++.|+++.|+.+|.+-. =..+++ .+|-.+..+=++-+..+
T Consensus 47 ~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp--~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 47 EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP--NVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC--CccHHHHHHHHHHHHHh
Confidence 4688899999999999999999999944 444444 46766666655544433
No 177
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=47.40 E-value=2.8e+02 Score=27.12 Aligned_cols=55 Identities=15% Similarity=0.060 Sum_probs=28.8
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSI 157 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i 157 (282)
+.-.|+|+.+.|+.+.|+++..++.+-. -..++.+..+.++.+..|||+...-.+
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~ls---P~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELS---PSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4445566666666666666655555322 223445555555555555555544333
No 178
>PRK14574 hmsH outer membrane protein; Provisional
Probab=46.83 E-value=1.7e+02 Score=31.54 Aligned_cols=101 Identities=15% Similarity=0.029 Sum_probs=76.7
Q ss_pred HHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhh
Q 023407 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKN 174 (282)
Q Consensus 95 eIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrn 174 (282)
+-.++..-++.++.-.||+..|.+.+.+......+.. .+.+..-.|....|........+.+++.+ + ++ .-
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~---~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~--P~---~~ 484 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQ---NLRIALASIYLARDLPRKAEQELKAVESL-A--PR---SL 484 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhh-C--Cc---cH
Confidence 3346778889999999999999999999987555554 45577888888889999999988766665 2 22 24
Q ss_pred HHHHHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 175 RLKVYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 175 rLkvy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
.+.+-.|...|..++|.+|-.+.=+++..+
T Consensus 485 ~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 485 ILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 556788889999999999977764444433
No 179
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=46.69 E-value=45 Score=24.62 Aligned_cols=50 Identities=20% Similarity=0.160 Sum_probs=32.3
Q ss_pred hhHHHHhCCHHHHHHHHHHhhccccC------chhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Q 023407 104 SLFYIQIGDKEKALEQLKVTESKTVA------VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 104 a~~~~~iGd~~~A~k~y~~~~e~~~s------~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e 165 (282)
|--.=..|++++|+.+|..+.+++.. ...+-+ .|| ..+..|+++|+.+-+
T Consensus 13 Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~----~lr--------~k~~eyl~RAE~LK~ 68 (75)
T cd02684 13 AVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKE----ALR--------QKVLQYVSRAEELKA 68 (75)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHH----HHH--------HHHHHHHHHHHHHHH
Confidence 33444789999999999998887643 222222 233 356678888877643
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=46.53 E-value=2.2e+02 Score=25.63 Aligned_cols=134 Identities=14% Similarity=0.165 Sum_probs=87.3
Q ss_pred HHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 023407 83 RIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (282)
Q Consensus 83 ~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~ 162 (282)
++.++.+.+..-..-.-...||+=..+.|+..+|...|.++.. .---+--.|.|.+.+--|..+++......+++.-.
T Consensus 75 ~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 75 HLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 3444444444455566688899999999999999999999873 22234456788888888889999888887776655
Q ss_pred HHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhccCCh
Q 023407 163 LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDR 229 (282)
Q Consensus 163 ~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLasl~R 229 (282)
..-.+-.++ .-|-....+ -..|.+..|-..|=..++-++ .++-.+.|+...+ ++.|
T Consensus 153 ~~pa~r~pd--~~Ll~aR~l--aa~g~~a~Aesafe~a~~~yp-----g~~ar~~Y~e~La--~qgr 208 (251)
T COG4700 153 YNPAFRSPD--GHLLFARTL--AAQGKYADAESAFEVAISYYP-----GPQARIYYAEMLA--KQGR 208 (251)
T ss_pred cCCccCCCC--chHHHHHHH--HhcCCchhHHHHHHHHHHhCC-----CHHHHHHHHHHHH--Hhcc
Confidence 432111121 233333333 357788877766665554443 3566788998754 5554
No 181
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=45.82 E-value=1.3e+02 Score=34.28 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=70.6
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccc--cCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKT--VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~--~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-|..-..|+.+.+|.++|-+...+++.-= .-..-++++|...+-+-.++|+-..+++-.++|-+..+. +
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~---------~ 1530 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA---------Y 1530 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch---------H
Confidence 46666789999999999999999988421 245789999999999999999999999999999988752 3
Q ss_pred HHHHHHHHhh--cccHHHHHHHhhcccccc
Q 023407 177 KVYEGLYCMS--TRNFKKAASLFLDSISTF 204 (282)
Q Consensus 177 kvy~gL~~l~--~r~f~~AA~lfld~~~tf 204 (282)
+||..|.-+. ..+|.+|.++|=..+--|
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF 1560 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKF 1560 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Confidence 4444443322 334555555544443333
No 182
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=45.73 E-value=1.9e+02 Score=26.81 Aligned_cols=90 Identities=12% Similarity=-0.034 Sum_probs=63.2
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|--|-+.|+.++|-..|.++++--......+.-.- =..+..||+.-..+++.+|..... ..+++
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg---ms~~L~gd~~~A~~lll~a~l~~~------ad~~v 204 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG---MSLLLRGDLEDAETLLLPAYLSPA------ADSRV 204 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH---HHHHHcCCHHHHHHHHHHHHhCCC------CchHH
Confidence 346888999999999999999999999987655555443211 123345899999999988887542 23333
Q ss_pred HHHHHHHHhhcccHHHHHH
Q 023407 177 KVYEGLYCMSTRNFKKAAS 195 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~ 195 (282)
.--.++..-.+|+|..|-.
T Consensus 205 ~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 205 RQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHHHHHHhhcCChHHHHh
Confidence 3444555566888877743
No 183
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=45.65 E-value=2.1e+02 Score=28.12 Aligned_cols=50 Identities=12% Similarity=0.013 Sum_probs=37.2
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhcc----ccCchhHHHHHHHHHHHHHHccC
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESK----TVAVGQKMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~----~~s~~~~id~~l~~irv~~~~~d 149 (282)
..+.|+-|++-|.+++|+.||++..+- .+....+.-.+|.+=|.++.-.|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~D 153 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEED 153 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 456899999999999999999996653 24556666667777666654443
No 184
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=45.59 E-value=1.3e+02 Score=30.45 Aligned_cols=91 Identities=13% Similarity=0.212 Sum_probs=73.5
Q ss_pred hhHHHHhCCHHHHHHHHHHhhccccCchh--HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHH
Q 023407 104 SLFYIQIGDKEKALEQLKVTESKTVAVGQ--KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEG 181 (282)
Q Consensus 104 a~~~~~iGd~~~A~k~y~~~~e~~~s~~~--~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~g 181 (282)
|=-.-+.|+...|-+.|.|+.+.-+++.. +=++..+.|-=++|.+|.+.....+..-++.. | +..=+....|
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~---~---~s~~l~LF~~ 86 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQF---G---KSAYLPLFKA 86 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhc---C---CchHHHHHHH
Confidence 33455778999999999999987665544 33688999999999999999999998887754 2 3456778899
Q ss_pred HHHhhcccHHHHHHHhhcc
Q 023407 182 LYCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 182 L~~l~~r~f~~AA~lfld~ 200 (282)
|++-..|.|.+|-+.|-..
T Consensus 87 L~~Y~~k~~~kal~~ls~w 105 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVW 105 (549)
T ss_pred HHHHHhhhHHHHHHHHHHH
Confidence 9999999999999888654
No 185
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=45.53 E-value=3.5e+02 Score=27.62 Aligned_cols=100 Identities=20% Similarity=0.204 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHH----HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccC
Q 023407 74 EDELKKLDDRIADAEENLGESEV----REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 74 ~~~l~~Le~~lk~~~~nl~~eeI----r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d 149 (282)
..+.+.|..++++..++..+.++ +++..+....-.+.-..+..++..... ..++-.|.-++-++..|+
T Consensus 52 ~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~~L--------~~i~~~l~~~~~al~~~~ 123 (593)
T PF06248_consen 52 IERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLEQL--------QEIDELLEEVEEALKEGN 123 (593)
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCC
Confidence 45577777777666554344444 444444444444433333444443333 567778889999999999
Q ss_pred hHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHH
Q 023407 150 FDLISKSIDKAKSLFEEGGDWERKNRLKVYEGL 182 (282)
Q Consensus 150 ~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL 182 (282)
+......+++++..++.++++.-. ..+||..|
T Consensus 124 ~~~Aa~~L~~~~~~L~~l~~~~~~-~~~i~~~L 155 (593)
T PF06248_consen 124 YLDAADLLEELKSLLDDLKSSKFE-ELKILKLL 155 (593)
T ss_pred HHHHHHHHHHHHHHHHhcCcCccc-ccHHHHHH
Confidence 999999999999999875444322 24555544
No 186
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=45.51 E-value=2.5e+02 Score=28.59 Aligned_cols=61 Identities=5% Similarity=0.005 Sum_probs=50.5
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhh-ccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTE-SKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~-e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~ 162 (282)
...+|....+.|...+|++.|..+. +.. ......+--++|..-+..+.+..|++.++|=..
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p--~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFP--NLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCC--ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 4568888999999999999999975 553 556667888899999999999999998888653
No 187
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=45.48 E-value=1.4e+02 Score=25.57 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=56.0
Q ss_pred ccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 125 SKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 125 e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
+|-..++..+.-.+.++.+|+..++...+..-+.-..-+- + ...-+..+.|.-++..|+|.+|..+|=+...
T Consensus 1 ~y~~C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR-----P-~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 1 EYLQCSDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLR-----P-EFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred CcCcCcHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-----C-CchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3455677788888999999999998888887777666652 1 1245678999999999999999999988643
No 188
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=45.30 E-value=2.1e+02 Score=29.80 Aligned_cols=158 Identities=11% Similarity=0.072 Sum_probs=85.3
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhcccc--CchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTV--AVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~--s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
+|-.+|++|.=-+|++.|+|+|.|+..--. +=.+.+ .|--..+..-.++|...--++---+-|+ .
T Consensus 423 sWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTL------------lGhE~~~~ee~d~a~~~fr~Al~~~~rh-Y 489 (638)
T KOG1126|consen 423 SWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTL------------LGHESIATEEFDKAMKSFRKALGVDPRH-Y 489 (638)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhh------------cCChhhhhHHHHhHHHHHHhhhcCCchh-h
Confidence 688899999999999999999999763111 001111 1222233444444444333211112221 2
Q ss_pred HHHH--HHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHH-hccCChHHHHHHccCChhHHHhhcCCchHH
Q 023407 177 KVYE--GLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTS-IISLDRVSLKQKVVDAPEILTVIGKIPYLS 253 (282)
Q Consensus 177 kvy~--gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~a-Lasl~R~eLk~kvl~~~e~~~~l~~~P~l~ 253 (282)
.++- |+-++.+++|..|--.|-.++. |.|...|+-+-+.. .--+.|.|---.+++-.-.+.-....|...
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~-------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVE-------INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhc-------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 2444 4567788999999999988876 34444444332222 222223322111222221121112234455
Q ss_pred HHHHHHhcCChhHHHHHHHHhhh
Q 023407 254 EFLNSLYDCQYKSFFSAFGEKRS 276 (282)
Q Consensus 254 ~ll~sfy~~~Y~~~~~~L~~~~~ 276 (282)
..---|-..+|..+|..|++++.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH
Confidence 55555677799999999988874
No 189
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.06 E-value=88 Score=31.84 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=59.5
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhcccc-------CchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcc
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTV-------AVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 171 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~-------s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~ 171 (282)
++.-.|+.+...+|++.|++.|.++.+--. +.+-.|.=.+-+.| |. ..+++|..++.+...-|
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-------wk---~d~~~a~~Ll~KA~e~D 533 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-------WK---EDINQAENLLRKAIELD 533 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-------hh---hhHHHHHHHHHHHHccC
Confidence 566778888888999999999998776432 33333333333333 43 55566666665544444
Q ss_pred hhhHHHHHHHHH--HhhcccHHHHHHHhhccc
Q 023407 172 RKNRLKVYEGLY--CMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 172 rrnrLkvy~gL~--~l~~r~f~~AA~lfld~~ 201 (282)
.|.-+ +|.||. .+.+++..+|-++|=++.
T Consensus 534 pkce~-A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 534 PKCEQ-AYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred chHHH-HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44222 566665 457899999999998874
No 190
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=44.86 E-value=2.6e+02 Score=25.95 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=47.8
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccCh-HHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDF-DLISKSIDKAKSL 163 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~-~~v~~~i~kA~~~ 163 (282)
...+..+|--+..-|++++|.+.+.++.+.-. .-.|..-++|=++...|+. ..+..++++.+..
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~---~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDP---NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C---CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 34567788888899999999999988876443 2357888888888888888 6678888887764
No 191
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=44.64 E-value=1.4e+02 Score=22.71 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=49.3
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDK 159 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~k 159 (282)
.+.+.|--++..-..+.|+..+.++.++.+.+..++-.+=.++++-..+|.+.....+.-+
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566778899999999999999999999999999999998888877777666443
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=44.06 E-value=30 Score=23.77 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=25.6
Q ss_pred HHHHHhhhhHHHHhC-CHHHHHHHHHHhhc
Q 023407 97 REAHLAKSLFYIQIG-DKEKALEQLKVTES 125 (282)
Q Consensus 97 r~a~~~la~~~~~iG-d~~~A~k~y~~~~e 125 (282)
..++..+|.-|.+.| +.++|++.|.++..
T Consensus 37 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 37 AEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 348999999999999 79999999999874
No 193
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=43.78 E-value=1.6e+02 Score=23.25 Aligned_cols=60 Identities=20% Similarity=0.092 Sum_probs=39.2
Q ss_pred HHHhCCHHHHHHHHHHhhccccCchh------------HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh
Q 023407 107 YIQIGDKEKALEQLKVTESKTVAVGQ------------KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE 166 (282)
Q Consensus 107 ~~~iGd~~~A~k~y~~~~e~~~s~~~------------~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ 166 (282)
..+.+|+++|.+...+..+..-.... .|++.+..++-.+..+|.+.....+..++.+++.
T Consensus 38 ~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~~dk~~~l~el~~lk~~i~~ 109 (121)
T PF14276_consen 38 AIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEAKDKSESLAELAELKELIEH 109 (121)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34556777777766654443322222 3667777777788888888888888888777653
No 194
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.47 E-value=1e+02 Score=22.92 Aligned_cols=57 Identities=19% Similarity=0.150 Sum_probs=34.9
Q ss_pred HhhhhHHHHhCCHHHHHHHHHHhhccccCc---hhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Q 023407 101 LAKSLFYIQIGDKEKALEQLKVTESKTVAV---GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 101 ~~la~~~~~iGd~~~A~k~y~~~~e~~~s~---~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e 165 (282)
..+|--.=+.|++++|+.+|..+.++=+.. +.+=|.....|| ..+..|+++|+.+-+
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir--------~K~~eYl~RAE~Lk~ 69 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQ--------EKSNEYLDRAQALHQ 69 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 334444557899999999999987753221 011122333333 356788888887754
No 195
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.52 E-value=2.8e+02 Score=25.56 Aligned_cols=129 Identities=15% Similarity=0.072 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCH-HHHHHHHHhhhhHHHHhCC
Q 023407 34 KGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGE-SEVREAHLAKSLFYIQIGD 112 (282)
Q Consensus 34 ~~~ll~~ik~~~m~~~Y~~l~~~~~~~~D~~~~~~~~~~n~~~l~~Le~~lk~~~~nl~~-eeIr~a~~~la~~~~~iGd 112 (282)
+..++.++.++++..-=+.+-+.+....+....-...+..-+++-+.+..-+.|+.-+.- ----+.++.-|-|.|+-|.
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 345677777777766555554444444444333334444333333333332222210000 0001246677889999999
Q ss_pred HHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 113 KEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 113 ~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
.++|...|+++..- +.-++.-|..-|+-=+++-.|+.+....++.++-.+
T Consensus 119 ~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 119 PEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred hHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 99999999887753 334555666666666777778888888888887554
No 196
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=41.86 E-value=1.9e+02 Score=29.19 Aligned_cols=61 Identities=8% Similarity=-0.057 Sum_probs=36.3
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~ 162 (282)
.+|..+|-.+...|+.++|...+.++.+--.+ .+-...+-++....|+......+..+|-.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS----WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666666666667777777777776654421 23444445555556666666666665544
No 197
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=41.84 E-value=3.2e+02 Score=26.15 Aligned_cols=58 Identities=3% Similarity=-0.089 Sum_probs=44.4
Q ss_pred hhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 103 KSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 103 la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
.++++.+.|+.+.|++.+.+..+.-.... +....+.++-+-.|||+.+...+.+.+..
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~---~al~ll~~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHP---EVLRLAEQAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 38999999999999999999987654443 44444556667779999999777776654
No 198
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=41.10 E-value=3.2e+02 Score=25.84 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=26.5
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHh
Q 023407 139 YTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLF 197 (282)
Q Consensus 139 ~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lf 197 (282)
-++.+++-.|+...+.+||.+.. + ..|.+.| +..|+|++|++.=
T Consensus 242 pFv~~~~~~~~~~eA~~yI~k~~-------~---~~rv~~y-----~~~~~~~~A~~~A 285 (319)
T PF04840_consen 242 PFVEACLKYGNKKEASKYIPKIP-------D---EERVEMY-----LKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC-------h---HHHHHHH-----HHCCCHHHHHHHH
Confidence 34556666777777777777621 1 2233333 6788888887753
No 199
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=41.00 E-value=45 Score=36.21 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=53.9
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~ 164 (282)
++|..+|+-|...|.+-.|++.|..+..+.- ....-+|...+-|+-+..|.|...+.++.+|..+.
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~-~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFY-KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4566899999999999999999988775543 56667788888898888899888888888887764
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=40.49 E-value=1.9e+02 Score=23.04 Aligned_cols=43 Identities=9% Similarity=0.037 Sum_probs=29.6
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhh-----ccccCchhHHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTE-----SKTVAVGQKMDLVFYTL 141 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~-----e~~~s~~~~id~~l~~i 141 (282)
++..+...|.+.|+...|++.|.+.+ +..+.|+..+.-+..-|
T Consensus 98 ~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~i 145 (146)
T PF03704_consen 98 AYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYREI 145 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHh
Confidence 57778899999999999999998854 56777777776655443
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.11 E-value=1.2e+02 Score=28.15 Aligned_cols=64 Identities=11% Similarity=-0.129 Sum_probs=43.8
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHh-hccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVT-ESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAK 161 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~-~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~ 161 (282)
-.|+.=||+-++.-||++.|-..|.++ ++|-.+++. =|+.|.+-.+-...|+.+.....+.+.-
T Consensus 178 ~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA-pdallKlg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 178 PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA-PDALLKLGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 457788888888888888888888874 455444432 3666766666666777776666666543
No 202
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=39.60 E-value=1.4e+02 Score=29.67 Aligned_cols=106 Identities=19% Similarity=0.068 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHcc
Q 023407 69 MRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYM 148 (282)
Q Consensus 69 ~~~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~ 148 (282)
.+-.-.-++-+|+..++-+++--- ..-|..||+...+.||.+-|.+||.++.|+.. +.=+....|
T Consensus 323 ~rFeLAl~lg~L~~A~~~a~~~~~----~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~-----------L~lLy~~~g 387 (443)
T PF04053_consen 323 HRFELALQLGNLDIALEIAKELDD----PEKWKQLGDEALRQGNIELAEECYQKAKDFSG-----------LLLLYSSTG 387 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHCCCCST----HHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHH-----------HHHHHHHCT
T ss_pred HHhHHHHhcCCHHHHHHHHHhcCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhcCccc-----------cHHHHHHhC
Confidence 444555566677777766654322 23688999999999999999999999987542 222455578
Q ss_pred ChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcc
Q 023407 149 DFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 149 d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~ 200 (282)
|...+++-.+.|+. .|||... -...+..||+++-.++|+++
T Consensus 388 ~~~~L~kl~~~a~~----~~~~n~a-------f~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 388 DREKLSKLAKIAEE----RGDINIA-------FQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHHHH----TT-HHHH-------HHHHHHHT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH----ccCHHHH-------HHHHHHcCCHHHHHHHHHHc
Confidence 87777666655544 3554332 23445568888888888776
No 203
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=39.58 E-value=1.4e+02 Score=21.44 Aligned_cols=53 Identities=21% Similarity=0.133 Sum_probs=33.1
Q ss_pred hhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHH----HccChHHHHHHHHHHHHHHh
Q 023407 103 KSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGF----FYMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 103 la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~----~~~d~~~v~~~i~kA~~~~e 165 (282)
.|.-+=+.|++++|+.+|.++.+++.. .+...- --.=|..+..|+++|+.+-.
T Consensus 14 ~Av~~d~~g~~~eAl~~Y~~a~e~l~~----------~~~~~~~~~~~~~~~~k~~eyl~raE~lk~ 70 (77)
T smart00745 14 KALKADEAGDYEEALELYKKAIEYLLE----------GIKVESDSKRREAVKAKAAEYLDRAEEIKK 70 (77)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH----------HhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445689999999999998765532 111110 00115677888888887754
No 204
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=39.55 E-value=76 Score=32.13 Aligned_cols=59 Identities=10% Similarity=0.049 Sum_probs=49.9
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA 160 (282)
.++|.-+|.++...|+.++|...|.++..-..+.- .+.+++=++|+.|.+.|.-++.++
T Consensus 453 ~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p-----t~~~~~~~~f~~~~~~~~~~~~~~ 511 (517)
T PRK10153 453 WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN-----TLYWIENLVFQTSVETVVPYLYRF 511 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-----hHHHHHhccccccHHHHHHHHHhc
Confidence 46899999999999999999999999887554433 377888999999999998887765
No 205
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=39.19 E-value=3.5e+02 Score=25.86 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=59.0
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 179 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy 179 (282)
+.-.+....+.||.+.|.+.|.++.+...+ ..+-..+...++.+..|+++.....++++...- ++...=++ .
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~--~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-----P~~~~al~-l 192 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADN--DQLPVEITRVRIQLARNENHAARHGVDKLLEVA-----PRHPEVLR-L 192 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCHHHHH-H
Confidence 445567779999999999999999874443 334344455889999999999888888775532 21111111 1
Q ss_pred HHHHHhhcccHHHHHHHh
Q 023407 180 EGLYCMSTRNFKKAASLF 197 (282)
Q Consensus 180 ~gL~~l~~r~f~~AA~lf 197 (282)
.+-.++..|++.+|.+.+
T Consensus 193 l~~~~~~~gdw~~a~~~l 210 (398)
T PRK10747 193 AEQAYIRTGAWSSLLDIL 210 (398)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 233335667777776444
No 206
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=38.97 E-value=2.2e+02 Score=23.48 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=28.2
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhcccc
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTV 128 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~ 128 (282)
-.++..+|.-|.+.|+.+.|+++|.++.+...
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 45789999999999999999999999887643
No 207
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=38.82 E-value=1.6e+02 Score=22.39 Aligned_cols=63 Identities=21% Similarity=0.234 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccC--chhHHHHHHHHHHH
Q 023407 75 DELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA--VGQKMDLVFYTLQL 143 (282)
Q Consensus 75 ~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s--~~~~id~~l~~irv 143 (282)
..++.|+..+. .|-.+. .+...+|..+...|+.+.|++.+-.+.....+ .+.-=..++.++++
T Consensus 6 ~~~~al~~~~a---~~P~D~---~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~ 70 (90)
T PF14561_consen 6 PDIAALEAALA---ANPDDL---DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL 70 (90)
T ss_dssp HHHHHHHHHHH---HSTT-H---HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHH---cCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence 45666777765 455553 56788999999999999999999886644322 23333444454443
No 208
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=38.72 E-value=1.6e+02 Score=28.97 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHH------------HHHHHHHHccChHHHHHHHHHH
Q 023407 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVF------------YTLQLGFFYMDFDLISKSIDKA 160 (282)
Q Consensus 93 ~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l------------~~irv~~~~~d~~~v~~~i~kA 160 (282)
|-+.-.|....|..+.+.|.++.|..-|....+...|.+...+..= ..+.-++--||...|..+|++.
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 3555667788899999999999999999999998887776665432 2233344456777777777655
Q ss_pred HHHHhhCCCcc---hhhHHHHHHH--HHHhhcccHHHHHHHhhcc
Q 023407 161 KSLFEEGGDWE---RKNRLKVYEG--LYCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 161 ~~~~e~ggdw~---rrnrLkvy~g--L~~l~~r~f~~AA~lfld~ 200 (282)
-.+ .-|+ |+.|-+||.+ =-..++.|.+.|+++=-|.
T Consensus 182 lEi----~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn 222 (504)
T KOG0624|consen 182 LEI----QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN 222 (504)
T ss_pred Hhc----CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Confidence 443 4587 4577777764 3556778888888875554
No 209
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=38.46 E-value=1.8e+02 Score=23.98 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHH
Q 023407 64 SVLDSMRTKIEDELKKLDDRIADAE--ENLGESEVREAHLAKSLFYIQIGDKEKALEQL 120 (282)
Q Consensus 64 ~~~~~~~~~n~~~l~~Le~~lk~~~--~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y 120 (282)
+-+..++++..++++.++.++.+.. ...+++++-....++..+-..++....++.-.
T Consensus 57 ~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 57 ESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4467888899999999999996654 56677777777777777777666666665543
No 210
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.36 E-value=1.4e+02 Score=31.14 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=78.3
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 179 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy 179 (282)
+...++|+-+.|-++.|+ +-|+.+.|++++.+.+ |+.+...+...++++... |..
T Consensus 617 rt~va~Fle~~g~~e~AL-------~~s~D~d~rFelal~l-------grl~iA~~la~e~~s~~K----w~~------- 671 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQAL-------ELSTDPDQRFELALKL-------GRLDIAFDLAVEANSEVK----WRQ------- 671 (794)
T ss_pred hhhHHhHhhhccchHhhh-------hcCCChhhhhhhhhhc-------CcHHHHHHHHHhhcchHH----HHH-------
Confidence 456788888888877665 5799999999966554 555555555555554332 543
Q ss_pred HHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhccCChHHHHHHccCChhHHHhhcCCchHHHHHHHH
Q 023407 180 EGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSL 259 (282)
Q Consensus 180 ~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLasl~R~eLk~kvl~~~e~~~~l~~~P~l~~ll~sf 259 (282)
.|=+.|..++|..|.++|..+-- +.+ | .|...++=++.-|.+ +-... +. ....=..++..|
T Consensus 672 Lg~~al~~~~l~lA~EC~~~a~d-~~~--L----------lLl~t~~g~~~~l~~-la~~~--~~---~g~~N~AF~~~~ 732 (794)
T KOG0276|consen 672 LGDAALSAGELPLASECFLRARD-LGS--L----------LLLYTSSGNAEGLAV-LASLA--KK---QGKNNLAFLAYF 732 (794)
T ss_pred HHHHHhhcccchhHHHHHHhhcc-hhh--h----------hhhhhhcCChhHHHH-HHHHH--Hh---hcccchHHHHHH
Confidence 35577889999999999998721 211 0 111222223333321 11110 00 011123567788
Q ss_pred hcCChhHHHHHHHHh
Q 023407 260 YDCQYKSFFSAFGEK 274 (282)
Q Consensus 260 y~~~Y~~~~~~L~~~ 274 (282)
-.++|..|++.|.+.
T Consensus 733 l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 733 LSGDYEECLELLIST 747 (794)
T ss_pred HcCCHHHHHHHHHhc
Confidence 889999999988764
No 211
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=38.34 E-value=71 Score=17.95 Aligned_cols=21 Identities=24% Similarity=0.109 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHhhccccCch
Q 023407 111 GDKEKALEQLKVTESKTVAVG 131 (282)
Q Consensus 111 Gd~~~A~k~y~~~~e~~~s~~ 131 (282)
|+.+.|.+.|.++...|....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~ 21 (33)
T smart00386 1 GDIERARKIYERALEKFPKSV 21 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCCh
Confidence 688999999999998887333
No 212
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=38.23 E-value=4.6e+02 Score=26.85 Aligned_cols=129 Identities=18% Similarity=0.092 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhh-hhHHHHhCCHHHHHHHHHHhhcccc-CchhHHHHHHHHH
Q 023407 64 SVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAK-SLFYIQIGDKEKALEQLKVTESKTV-AVGQKMDLVFYTL 141 (282)
Q Consensus 64 ~~~~~~~~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~l-a~~~~~iGd~~~A~k~y~~~~e~~~-s~~~~id~~l~~i 141 (282)
..+.+...+. -+.-++..|.+++. .+.........=+ ..++...||...|+..+.+...... .....+-+.+.++
T Consensus 108 ~i~~~~~~~~--a~~~l~~~I~~~~~-~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 108 RIYFKTNPKA--ALKNLDKAIEDSET-YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHhcCHHH--HHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 3344444344 45567777777665 3334444443333 5566566999999999999888775 4555666777777
Q ss_pred HHHHHc--cChHHHHHHHHHHHHHHhhCCCcc---hhhHHHHHHHH----HHhhcccHHHHHHH
Q 023407 142 QLGFFY--MDFDLISKSIDKAKSLFEEGGDWE---RKNRLKVYEGL----YCMSTRNFKKAASL 196 (282)
Q Consensus 142 rv~~~~--~d~~~v~~~i~kA~~~~e~ggdw~---rrnrLkvy~gL----~~l~~r~f~~AA~l 196 (282)
.-.+.. +..+.+...++++...... -.|+ ....|+++.=+ +.+..++++.+.+.
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~-~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~ 247 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARS-LQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQK 247 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhh-cccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666655 4455566666666555543 1232 45677776643 55567777666554
No 213
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.13 E-value=58 Score=34.18 Aligned_cols=48 Identities=19% Similarity=0.143 Sum_probs=37.0
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhcccc-----------------CchhHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTV-----------------AVGQKMDLVFYTLQLG 144 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~-----------------s~~~~id~~l~~irv~ 144 (282)
.+++-.+|+.|-..|+++.|+..|..+.+.-. ....-.+.++.-+|+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln 180 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN 180 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC
Confidence 35677889999999999999999999887765 4555667777777654
No 214
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.85 E-value=1.2e+02 Score=30.14 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHH------HHhhccccCchhHHHHHH
Q 023407 65 VLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQL------KVTESKTVAVGQKMDLVF 138 (282)
Q Consensus 65 ~~~~~~~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y------~~~~e~~~s~~~~id~~l 138 (282)
-+.....+..++++.|+.|++.+++ +.| -+++.|++.-|++.. ++-++.|++.-+.++-++
T Consensus 237 ~L~~~~~~L~kqie~L~qeie~~~~-----~~r--------~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl 303 (439)
T KOG2911|consen 237 DLIQARAKLAKQIEFLEQEIEKSKE-----KLR--------QALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVL 303 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHH--------HHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3456677888999999999987554 333 445778877776654 456678888888888888
Q ss_pred HHHHHH
Q 023407 139 YTLQLG 144 (282)
Q Consensus 139 ~~irv~ 144 (282)
+.|--+
T Consensus 304 ~~Id~s 309 (439)
T KOG2911|consen 304 SQIDNS 309 (439)
T ss_pred HHHHhh
Confidence 877655
No 215
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=37.77 E-value=3.9e+02 Score=25.90 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhc-------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 023407 30 KVGLKGEVFSMVKAHDMASFYETLVAES-------------------------VLEMDQSVLDSMRTKIEDELKKLDDRI 84 (282)
Q Consensus 30 ~~~a~~~ll~~ik~~~m~~~Y~~l~~~~-------------------------~~~~D~~~~~~~~~~n~~~l~~Le~~l 84 (282)
|.+.++.+++.| +..+|..+|.++ +.+.++.-+.++..-..+-+.-.+.=+
T Consensus 201 R~d~Le~~~~~L----n~~~y~~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl 276 (371)
T PF12309_consen 201 RADLLEPLLKEL----NPQYYLNLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFL 276 (371)
T ss_pred HHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 567777777763 134566667778888888888777777
Q ss_pred HHHHH--------hhCHHHHH---HHHHhhhhHHHHh---------CCHHHHHHHHHHhhccccCchh
Q 023407 85 ADAEE--------NLGESEVR---EAHLAKSLFYIQI---------GDKEKALEQLKVTESKTVAVGQ 132 (282)
Q Consensus 85 k~~~~--------nl~~eeIr---~a~~~la~~~~~i---------Gd~~~A~k~y~~~~e~~~s~~~ 132 (282)
+.+++ ++.+++.| .|+.-+|..|.+. +.++.++..|....+||-....
T Consensus 277 ~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 277 DSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 77762 34555554 3577788877766 5578999999999999977666
No 216
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.72 E-value=1.3e+02 Score=32.51 Aligned_cols=69 Identities=19% Similarity=0.103 Sum_probs=48.8
Q ss_pred HHHHH-HhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCc------------hhHHHHHHHHHHHHHHccCh
Q 023407 84 IADAE-ENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV------------GQKMDLVFYTLQLGFFYMDF 150 (282)
Q Consensus 84 lk~~~-~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~------------~~~id~~l~~irv~~~~~d~ 150 (282)
++=|+ .+++.+-++..|.+-|+|.++-||+++|.-.|-++..+--++ .+-.+..=++++-|+...|+
T Consensus 354 i~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dh 433 (933)
T KOG2114|consen 354 INLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDH 433 (933)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchh
Confidence 33344 567778888889999999999999999999999887764332 23334455566666665554
Q ss_pred HH
Q 023407 151 DL 152 (282)
Q Consensus 151 ~~ 152 (282)
..
T Consensus 434 tt 435 (933)
T KOG2114|consen 434 TT 435 (933)
T ss_pred HH
Confidence 43
No 217
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=37.45 E-value=3.6e+02 Score=28.69 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHcc
Q 023407 69 MRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYM 148 (282)
Q Consensus 69 ~~~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~ 148 (282)
+-.++--.++.|++-+..+-...-+.+|-.-|..+-.+ ..||...|.-...+++++.. |--|+.|.-+++-+.-.
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w--~agdv~~ar~il~~af~~~p---nseeiwlaavKle~en~ 632 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW--KAGDVPAARVILDQAFEANP---NSEEIWLAAVKLEFEND 632 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH--hcCCcHHHHHHHHHHHHhCC---CcHHHHHHHHHHhhccc
Confidence 34455556788888888887777788877776655544 45999999999999998764 46799999999999999
Q ss_pred ChHHHHHHHHHHHH
Q 023407 149 DFDLISKSIDKAKS 162 (282)
Q Consensus 149 d~~~v~~~i~kA~~ 162 (282)
.++.....+.||.+
T Consensus 633 e~eraR~llakar~ 646 (913)
T KOG0495|consen 633 ELERARDLLAKARS 646 (913)
T ss_pred cHHHHHHHHHHHhc
Confidence 99999999999988
No 218
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=37.32 E-value=3.1e+02 Score=28.33 Aligned_cols=128 Identities=15% Similarity=0.161 Sum_probs=85.1
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHhhC----CCcc---
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGF-FYMDFDLISKSIDKAKSLFEEG----GDWE--- 171 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~-~~~d~~~v~~~i~kA~~~~e~g----gdw~--- 171 (282)
|.+-|+|-+++|..+++++.|++... +....+|++++-.+... -.||.+.|.+..++|+..+... .=|+
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~---aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyi 158 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQ---AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYI 158 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHH
Confidence 67889999999999999999999773 44477888877666544 4589999999999999988420 0132
Q ss_pred --------hhhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHH---hccCChH
Q 023407 172 --------RKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTS---IISLDRV 230 (282)
Q Consensus 172 --------rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~a---Lasl~R~ 230 (282)
+++-..+|+=+-..-...|..==..|.+-+-+-.-..+++.+.++--+.=.+ .+++.|.
T Consensus 159 e~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~ 228 (577)
T KOG1258|consen 159 EFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQE 228 (577)
T ss_pred HHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccC
Confidence 2344555555555445555444455555555555566777777766554443 2555553
No 219
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=37.05 E-value=4e+02 Score=25.88 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=32.5
Q ss_pred CHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccc-cCchhHH
Q 023407 92 GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKT-VAVGQKM 134 (282)
Q Consensus 92 ~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~-~s~~~~i 134 (282)
++.|.-++++.||+.|.+.|..+.|++...-..+-. .+-.++.
T Consensus 64 ~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~ 107 (389)
T COG2956 64 EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRL 107 (389)
T ss_pred cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHH
Confidence 456777889999999999999999999887765544 3334443
No 220
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=36.71 E-value=3.8e+02 Score=29.38 Aligned_cols=38 Identities=8% Similarity=-0.045 Sum_probs=32.2
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMD 135 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id 135 (282)
.|+..+|+.|-+.|+.++|..+|.++.++....-..+.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHH
Confidence 48999999999999999999999999998854444443
No 221
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=36.34 E-value=1.8e+02 Score=21.68 Aligned_cols=57 Identities=11% Similarity=0.041 Sum_probs=35.3
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHH---HH-HccChHHHHHHHHHHHHHHhh
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQL---GF-FYMDFDLISKSIDKAKSLFEE 166 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv---~~-~~~d~~~v~~~i~kA~~~~e~ 166 (282)
+..+|--+=+.|+.++|+.+|.++.| ..+.+++. .- -..=-..++.|+++|+.+-+.
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe----------~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~ 69 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIE----------VLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQ 69 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----------HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667789999999999998754 33333332 00 000124577888888877553
No 222
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.11 E-value=3.5e+02 Score=24.90 Aligned_cols=164 Identities=20% Similarity=0.136 Sum_probs=106.1
Q ss_pred CHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcc
Q 023407 92 GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 171 (282)
Q Consensus 92 ~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~ 171 (282)
...+.+.++..||-=|.+-||...|.+.++++.+.-.+. .+..+...-+.--.|+.++....-.||=++--..||
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~---~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd-- 104 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY---YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD-- 104 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc--
Confidence 446677888999999999999999999999988654432 333344444444568888888888888776533333
Q ss_pred hhhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHh----ccCChHHHHHHccCChhHHHhhc
Q 023407 172 RKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSI----ISLDRVSLKQKVVDAPEILTVIG 247 (282)
Q Consensus 172 rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aL----asl~R~eLk~kvl~~~e~~~~l~ 247 (282)
-|.=| |-++..+|.|.+|-.-|..++..=.+++ +.|--.=.|+|++ ....+..|++-+--+|.+-.
T Consensus 105 ---VLNNY-G~FLC~qg~~~eA~q~F~~Al~~P~Y~~---~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~--- 174 (250)
T COG3063 105 ---VLNNY-GAFLCAQGRPEEAMQQFERALADPAYGE---PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP--- 174 (250)
T ss_pred ---hhhhh-hHHHHhCCChHHHHHHHHHHHhCCCCCC---cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh---
Confidence 22223 6677789999999999999864322222 2233334578888 77788888877655554432
Q ss_pred CCchHHHHHHH-HhcCChhHHHHHHHH
Q 023407 248 KIPYLSEFLNS-LYDCQYKSFFSAFGE 273 (282)
Q Consensus 248 ~~P~l~~ll~s-fy~~~Y~~~~~~L~~ 273 (282)
.+.++... +-..+|..-...+..
T Consensus 175 ---~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 175 ---ALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred ---HHHHHHHHHHhcccchHHHHHHHH
Confidence 23333333 334466554444433
No 223
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=35.36 E-value=92 Score=32.39 Aligned_cols=92 Identities=16% Similarity=0.070 Sum_probs=62.3
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.||.-+|.-|.+.|.++.|.-.|.++++-..+....+ .+. |-.-+-.+..++|=.++++..--+.+|-|.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~-~~~---------g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~ 559 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL-CHI---------GRIQHQLKRKDKALQLYEKAIHLDPKNPLC 559 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH-hhh---------hHHHHHhhhhhHHHHHHHHHHhcCCCCchh
Confidence 3789999999999999999999999998665554443 222 222344455555555555555455555553
Q ss_pred -HHHHHHHhhcccHHHHHHHhhc
Q 023407 178 -VYEGLYCMSTRNFKKAASLFLD 199 (282)
Q Consensus 178 -vy~gL~~l~~r~f~~AA~lfld 199 (282)
+..|.-+.+.++|.+|-..|=+
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHH
Confidence 4456777778899998876543
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=34.58 E-value=3.8e+02 Score=27.03 Aligned_cols=83 Identities=19% Similarity=0.184 Sum_probs=57.0
Q ss_pred HHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhH---HHHHHHHHHHHHHccChHHHH----H
Q 023407 83 RIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQK---MDLVFYTLQLGFFYMDFDLIS----K 155 (282)
Q Consensus 83 ~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~---id~~l~~irv~~~~~d~~~v~----~ 155 (282)
+|.-+++=..+-+-|+|+-.+|+-|.=-|..+-|.+.|.+++--..-.|.+ ..+|.++--......++.... +
T Consensus 221 RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 221 RLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 334445555567889999999999999999999999999988766666554 456666655555555544443 3
Q ss_pred HHHHHHHHHh
Q 023407 156 SIDKAKSLFE 165 (282)
Q Consensus 156 ~i~kA~~~~e 165 (282)
++.-|+++-+
T Consensus 301 HLaIAqeL~D 310 (639)
T KOG1130|consen 301 HLAIAQELED 310 (639)
T ss_pred HHHHHHHHHH
Confidence 4444555543
No 225
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=34.49 E-value=3.2e+02 Score=28.01 Aligned_cols=102 Identities=23% Similarity=0.304 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhCHHHHHHH--HHhhhhHHHHhCCHHHHHHHHHHh-----hc----
Q 023407 62 DQSVLDSMRTKIEDELKKLDDRIADAE-----ENLGESEVREA--HLAKSLFYIQIGDKEKALEQLKVT-----ES---- 125 (282)
Q Consensus 62 D~~~~~~~~~~n~~~l~~Le~~lk~~~-----~nl~~eeIr~a--~~~la~~~~~iGd~~~A~k~y~~~-----~e---- 125 (282)
|....++.. +.++.+++++.+|+.|- +++.++|.|+. +.+-+.=+-+|||+-+-+-.+.+. ++
T Consensus 361 ~~~~~~~i~-~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE~IgDiie~l~~~~~kk~~~~~~fse~ 439 (533)
T COG1283 361 DAKKVKEIR-KLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLEHIGDIIERLLELADKKIANGRAFSED 439 (533)
T ss_pred chHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 777777776 67788999999999986 77788887776 778888888899887665544321 11
Q ss_pred cccCchhHHHHHHHHHHHH---HHccChHHHHHHHHHHHHHH
Q 023407 126 KTVAVGQKMDLVFYTLQLG---FFYMDFDLISKSIDKAKSLF 164 (282)
Q Consensus 126 ~~~s~~~~id~~l~~irv~---~~~~d~~~v~~~i~kA~~~~ 164 (282)
.-.-..+..++...-+|.+ +.-+|.+.....+++=+..-
T Consensus 440 ~~~el~~l~~~~~~n~~~a~~~l~~~D~~~ar~lv~~k~~~r 481 (533)
T COG1283 440 GLEELDALFALTLENLRLAISVLVTGDLELARRLVERKKRVR 481 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1122334445544444444 44567666666666555443
No 226
>TIGR00593 pola DNA polymerase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.71 E-value=1.2e+02 Score=32.86 Aligned_cols=52 Identities=15% Similarity=0.440 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCHHHHHHH----------HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023407 35 GEVFSMVKAHDMASFYETL----------VAESVLEMDQSVLDSMRTKIEDELKKLDDRIAD 86 (282)
Q Consensus 35 ~~ll~~ik~~~m~~~Y~~l----------~~~~~~~~D~~~~~~~~~~n~~~l~~Le~~lk~ 86 (282)
..+...+++..+..+|..+ .+..|+++|.++++++..+..+++++|+.++.+
T Consensus 471 ~~l~~~l~~~~l~~l~~~iE~pl~~vLa~ME~~Gi~vD~~~l~~~~~~~~~~l~~le~~i~~ 532 (887)
T TIGR00593 471 EELLKELDENKLLSLYREIELPLSKVLAEMEKTGIKVDADYLQELSQEFGEEIADLEEEIYE 532 (887)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhCCEEeCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666666654 222489999999999999999999999999965
No 227
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=32.68 E-value=2.1e+02 Score=24.05 Aligned_cols=57 Identities=19% Similarity=0.102 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHH-hhCH-HHHHHHHHhhhhH---------------HHHhCCHHHHHHHHHHhhccccCchh
Q 023407 76 ELKKLDDRIADAEE-NLGE-SEVREAHLAKSLF---------------YIQIGDKEKALEQLKVTESKTVAVGQ 132 (282)
Q Consensus 76 ~l~~Le~~lk~~~~-nl~~-eeIr~a~~~la~~---------------~~~iGd~~~A~k~y~~~~e~~~s~~~ 132 (282)
..++++++-..|=+ +.++ -|+|.+++++-.| -.+..|+..|++.++-.-+||...++
T Consensus 46 t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~ 119 (149)
T KOG4077|consen 46 TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQ 119 (149)
T ss_pred cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHH
Confidence 45556666655544 3333 7888888887665 23566777777777777777766665
No 228
>cd08638 DNA_pol_A_theta DNA polymerase theta is a low-fidelity family A enzyme implicated in translesion synthesis and in somatic hypermutation. DNA polymerase theta is a low-fidelity family A enzyme implicated in translesion synthesis (TLS) and in somatic hypermutation (SHM). DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Pol theta is an exception among family A polymerases and generates processive single base substitutions. Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I (pol I) ,mitochondri
Probab=32.43 E-value=1.7e+02 Score=28.13 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023407 58 VLEMDQSVLDSMRTKIEDELKKLDDRIAD 86 (282)
Q Consensus 58 ~~~~D~~~~~~~~~~n~~~l~~Le~~lk~ 86 (282)
|+++|.++++.+....+.++++|+.++..
T Consensus 1 Gi~~d~~~l~~~~~~l~~~~~~le~~~~~ 29 (373)
T cd08638 1 GIGFDPEELERQRALLQAKLKELEEEAYR 29 (373)
T ss_pred CeEeCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999975
No 229
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.23 E-value=3.4e+02 Score=24.49 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=45.2
Q ss_pred HhhHhHhhcCCCCcchhhHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023407 13 LAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEE 89 (282)
Q Consensus 13 l~~l~f~~~~~~~~~~~~~~a~~~ll~~ik~~~m~~~Y~~l~~~~~~~~D~~~~~~~~~~n~~~l~~Le~~lk~~~~ 89 (282)
|..+++.++.....+ ...+|-..+.+.+++.-.++||-.- . .=..++--++.+.++++|+.+++..+.
T Consensus 9 le~lf~rlk~a~~~~-rD~~Ae~lI~~~~~~qP~a~Y~laQ--~------vliqE~ALk~a~~~i~eLe~ri~~lq~ 76 (233)
T COG3416 9 LENLFHRLKKAEANE-RDPQAEALIAEAVAKQPDAAYYLAQ--R------VLIQEQALKKASTQIKELEKRIAILQA 76 (233)
T ss_pred HHHHHHHHhhcccCC-CChHHHHHHHHHHhcCCchHHHHHH--H------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566666665443 4456777777888888999999642 1 112344556777888889988887665
No 230
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=31.97 E-value=74 Score=27.27 Aligned_cols=50 Identities=20% Similarity=0.481 Sum_probs=37.6
Q ss_pred hccCChHHHH----HHccCChhHHHhhcC--CchHHHHHHHHhcC-ChhHHHHHHHH
Q 023407 224 IISLDRVSLK----QKVVDAPEILTVIGK--IPYLSEFLNSLYDC-QYKSFFSAFGE 273 (282)
Q Consensus 224 Lasl~R~eLk----~kvl~~~e~~~~l~~--~P~l~~ll~sfy~~-~Y~~~~~~L~~ 273 (282)
++.+++.+|+ .|+-+|++|+++.+. .|..+++++.++++ .|..++..|.+
T Consensus 111 ~~~lP~~~l~aL~~~K~~~s~~F~~f~~~l~S~ef~~~~~~~~~~~~~~~~~~~L~~ 167 (179)
T PF06757_consen 111 LALLPRDKLRALYEEKLATSPEFAEFVEALRSPEFQQLYNALWASPEFQRLLNELRE 167 (179)
T ss_pred HHHCCHHHHHHHHHHHHHCCHHHHHHHHHHcCHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 4566777776 567789999999885 46779999988877 57777776654
No 231
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.91 E-value=82 Score=32.85 Aligned_cols=81 Identities=16% Similarity=0.054 Sum_probs=57.1
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.-|..||++..+.|++..|.+|+.+++|+.. ++-+.--.||...+...-+-|+.. | +|-+
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~-----------LlLl~t~~g~~~~l~~la~~~~~~----g----~~N~- 726 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARDLGS-----------LLLLYTSSGNAEGLAVLASLAKKQ----G----KNNL- 726 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcchhh-----------hhhhhhhcCChhHHHHHHHHHHhh----c----ccch-
Confidence 3488999999999999999999999998742 233444456766555444443331 1 2222
Q ss_pred HHHHHHHhhcccHHHHHHHhhcc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~ 200 (282)
.-+..+..|++.+.+++++++
T Consensus 727 --AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 --AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --HHHHHHHcCCHHHHHHHHHhc
Confidence 236677899999999999998
No 232
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=31.88 E-value=4.9e+02 Score=30.14 Aligned_cols=111 Identities=12% Similarity=0.076 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHh
Q 023407 47 ASFYETLVAESVLEMDQSVLDSMR---TKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVT 123 (282)
Q Consensus 47 ~~~Y~~l~~~~~~~~D~~~~~~~~---~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~ 123 (282)
..+|+.+.++++ ..-+-|+.-.+ .+|++ +.-..-|+.|-+-+-+-+=.+-....|..-++.||-+.+-..|.-.
T Consensus 1550 ~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~--~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1550 DELLRLMLKKFG-QTRKVWIMYADFLLRQNEA--EAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred HHHHHHHHHHhc-chhhHHHHHHHHHhcccHH--HHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHH
Confidence 345555555555 33444443322 22221 2333344555555555555555667788889999999988888765
Q ss_pred hccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 124 ESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 124 ~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
. ++--.+.|++.--|+.-+-++|.+.|....+++=++
T Consensus 1627 l---~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1627 L---SAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred H---hhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 4 333458999999999999999999999999888654
No 233
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.55 E-value=3.9e+02 Score=25.79 Aligned_cols=100 Identities=19% Similarity=0.199 Sum_probs=74.7
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHH--hhccc-cCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKV--TESKT-VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~--~~e~~-~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-.++...+-..||..+|....-. .--|+ .-..-++...|..+|+++..+||.....+..|...---+..|. ..-|+
T Consensus 134 T~~L~~ikee~Gdi~sA~Dilcn~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~-~slKl 212 (439)
T COG5071 134 TQLLSQIKEEQGDIKSAQDILCNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDV-QSLKL 212 (439)
T ss_pred HHHHHHHHHHhcchhHHHHHHhcCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccH-HHHHH
Confidence 45788999999999999886543 22232 4456788999999999999999999999999886544332332 34688
Q ss_pred HHHHHHHH--hhcccHHHHHHHhhcc
Q 023407 177 KVYEGLYC--MSTRNFKKAASLFLDS 200 (282)
Q Consensus 177 kvy~gL~~--l~~r~f~~AA~lfld~ 200 (282)
+-|+=+-. |..|.|=.|++-+-++
T Consensus 213 kyYeL~V~i~Lh~R~Yl~v~~y~~~v 238 (439)
T COG5071 213 KYYELKVRIGLHDRAYLDVCKYYRAV 238 (439)
T ss_pred HHHHHhheeecccHHHHHHHHHHHHH
Confidence 99987654 4688898998665554
No 234
>PF01630 Glyco_hydro_56: Hyaluronidase; InterPro: IPR018155 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 56 GH56 from CAZY comprises enzymes with only one known activity; hyaluronidase 3.2.1.35 from EC. The venom of Apis mellifera (Honeybee) contains several biologically-active peptides and two enzymes, one of which is a hyaluronidase []. The amino acid sequence of bee venom hyaluronidase contains 349 amino acids, and includes four cysteines and a number of potential glycosylation sites []. The sequence shows a high degree of similarity to PH-20, a membrane protein of mammalian sperm involved in sperm-egg adhesion, supporting the view that hyaluronidases play a role in fertilisation []. PH-20 is required for sperm adhesion to the egg zona pellucida; it is located on both the sperm plasma membrane and acrosomal membrane []. The amino acid sequence of the mature protein contains 468 amino acids, and includes six potential N-linked glycosylation sites and twelve cysteines, eight of which are tightly clustered near the C terminus [].; GO: 0004415 hyalurononglucosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1FCQ_A 1FCV_A 1FCU_A 2J88_A 2PE4_A 2ATM_A.
Probab=31.42 E-value=73 Score=30.59 Aligned_cols=49 Identities=33% Similarity=0.607 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhh-------CC----Ccc------hh--hHHHHHH-----------------HHHHhhcccHHHHHH
Q 023407 152 LISKSIDKAKSLFEE-------GG----DWE------RK--NRLKVYE-----------------GLYCMSTRNFKKAAS 195 (282)
Q Consensus 152 ~v~~~i~kA~~~~e~-------gg----dw~------rr--nrLkvy~-----------------gL~~l~~r~f~~AA~ 195 (282)
.+..|++||+.-+.+ .| ||| +| ....+|. -+-..+.++|++||+
T Consensus 79 ~L~~HL~k~~~dI~~~ip~~~f~GLaVIDwE~WRP~w~rNw~~k~iYr~~S~~lv~~~hp~ws~~~v~~~A~~~FE~aAr 158 (337)
T PF01630_consen 79 NLSAHLEKAKEDINEYIPDPDFSGLAVIDWEEWRPLWRRNWGSKDIYRNESIELVRQQHPDWSEKEVEKEAKKEFEKAAR 158 (337)
T ss_dssp -HHHHHHHHHHHHHHHS--TT--SEEEEE--SS-SSGGG--GGGHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCcceEEeccccccchhhcCCCcHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 467788888887754 22 665 23 2556665 456778999999999
Q ss_pred Hhhcc
Q 023407 196 LFLDS 200 (282)
Q Consensus 196 lfld~ 200 (282)
.|+.-
T Consensus 159 ~fM~e 163 (337)
T PF01630_consen 159 KFMEE 163 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99984
No 235
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.96 E-value=1.2e+02 Score=28.13 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHH
Q 023407 154 SKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAA 194 (282)
Q Consensus 154 ~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA 194 (282)
.+++.++-+.++ .-++..|+++...|.++++|.|.+.+
T Consensus 59 ~~~i~~ll~~L~---~~~~~~R~~al~~LlYi~~G~~~~~~ 96 (293)
T PF07923_consen 59 KDFIEKLLDQLE---SSDSEDRLEALRALLYIAQGTWGETA 96 (293)
T ss_pred HHHHHHHHHhcc---ccchhhHHHHHHHHHHHHcCCccccC
Confidence 344444444444 33667779999999999999998766
No 236
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=30.30 E-value=5.9e+02 Score=25.76 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhC-CCcch
Q 023407 131 GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG-GDWER 172 (282)
Q Consensus 131 ~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~g-gdw~r 172 (282)
|....-...--...++.|+|........+|++....| .+|.|
T Consensus 422 g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR 464 (484)
T COG4783 422 GNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWAR 464 (484)
T ss_pred CchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3333444444445566677777777777777776543 25654
No 237
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=30.07 E-value=91 Score=20.06 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=23.0
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhc
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTES 125 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e 125 (282)
+.|..||+.-...++++.|+.=|.++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3577889999999999999988888765
No 238
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=30.03 E-value=3.7e+02 Score=26.45 Aligned_cols=106 Identities=13% Similarity=0.034 Sum_probs=69.2
Q ss_pred CcchHHhhHhHhhcCCCCcchhhHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023407 8 QAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADA 87 (282)
Q Consensus 8 ~p~~~l~~l~f~~~~~~~~~~~~~~a~~~ll~~ik~~~m~~~Y~~l~~~~~~~~D~~~~~~~~~~n~~~l~~Le~~lk~~ 87 (282)
.|.+.++=....++ |. ...+|.+.+.+.+|++.+..+++.+ ..+ -|-|. ...++.+|.-++..
T Consensus 262 ~p~l~~~~a~~li~-l~----~~~~A~~~i~~~Lk~~~D~~L~~~~-~~l-~~~d~----------~~l~k~~e~~l~~h 324 (400)
T COG3071 262 DPELVVAYAERLIR-LG----DHDEAQEIIEDALKRQWDPRLCRLI-PRL-RPGDP----------EPLIKAAEKWLKQH 324 (400)
T ss_pred ChhHHHHHHHHHHH-cC----ChHHHHHHHHHHHHhccChhHHHHH-hhc-CCCCc----------hHHHHHHHHHHHhC
Confidence 57777666555554 33 3468888888999988887744432 222 23332 22333344444433
Q ss_pred HHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHH
Q 023407 88 EENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDL 136 (282)
Q Consensus 88 ~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~ 136 (282)
.++- ..+..||..+.+.+.+.+|-.+++.+..+-++..+-...
T Consensus 325 ~~~p------~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~l 367 (400)
T COG3071 325 PEDP------LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAEL 367 (400)
T ss_pred CCCh------hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHH
Confidence 3322 668899999999999999999999999888777665543
No 239
>PF12289 Rotavirus_VP1: Rotavirus VP1 structural protein; InterPro: IPR022071 This domain family is found in viruses, and is approximately 50 amino acids in length. The family is found in association with PF02123 from PFAM. VP1 is a structural protein of the inner core layer of the rotavirus virion. It complexes with VP2 and Vp3 to form this layer. ; GO: 0003968 RNA-directed RNA polymerase activity; PDB: 2R7X_B 2R7S_A 2R7Q_A 2R7U_A 2R7R_A 2R7T_A 2R7V_A 2R7W_A 2R7O_A.
Probab=30.01 E-value=28 Score=23.63 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCchhH
Q 023407 173 KNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTF 215 (282)
Q Consensus 173 rnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~ 215 (282)
++||..|.-+++--.|+--.+.-.||..+.||-+...++-+|+
T Consensus 9 kaklnsyapialekrr~q~s~l~t~lq~p~~fks~~~vtind~ 51 (52)
T PF12289_consen 9 KAKLNSYAPIALEKRRAQLSILLTFLQKPTTFKSSTVVTINDI 51 (52)
T ss_dssp HHGGGGSHHHHHHHHHHHHHHHHHHHHS---------EEHHHH
T ss_pred HhhhccCCchhHHHHHHHHHHHHHHHhCCceecccceeeeccc
Confidence 6788888888888888888888899999888988888888886
No 240
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=29.99 E-value=5.6e+02 Score=25.37 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=32.0
Q ss_pred HHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHc
Q 023407 108 IQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY 147 (282)
Q Consensus 108 ~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~ 147 (282)
...||...|+..+....+.-..+-..+.++...+|.-+..
T Consensus 258 i~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~v 297 (451)
T PRK06305 258 ITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLK 297 (451)
T ss_pred HHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH
Confidence 3558999999999998877777778888888888877654
No 241
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=29.95 E-value=1.2e+02 Score=30.78 Aligned_cols=96 Identities=20% Similarity=0.236 Sum_probs=61.9
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh-----------C
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE-----------G 167 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~-----------g 167 (282)
.|.+-..|+..|||.++|++...+..++|.|..-+..-|-.+ -+|-..|...-+++-+.+.. |
T Consensus 304 vw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel------~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~ 377 (660)
T COG5107 304 VWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYEL------VNDEEAVYGCFDKCTQDLKRKYSMGESESASK 377 (660)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhh------cccHHHHhhhHHHHHHHHHHHHhhhhhhhhcc
Confidence 367889999999999999999999999999955444333322 24666666655555444321 2
Q ss_pred CC--c--------chhhHHHHHHHHHH---hhcccHHHHHHHhhcc
Q 023407 168 GD--W--------ERKNRLKVYEGLYC---MSTRNFKKAASLFLDS 200 (282)
Q Consensus 168 gd--w--------~rrnrLkvy~gL~~---l~~r~f~~AA~lfld~ 200 (282)
.| . -|+||+...--++. +..+-.+.|-.+|..+
T Consensus 378 ~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 378 VDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred ccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 22 2 26777766554433 2344556677778776
No 242
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=29.73 E-value=2.9e+02 Score=23.58 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=52.5
Q ss_pred cccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 126 KTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 126 ~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
|---++..+.-...++.+|+..++..-+..-++...-+-= +..=+..+.|.-+|..|++.+|.+.|=+....
T Consensus 2 y~qCs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP------~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 2 YIQCSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRP------NLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCcCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4445566777778888899998888888877777666521 11234578888899999999999988777543
No 243
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=29.59 E-value=5.9e+02 Score=26.37 Aligned_cols=42 Identities=10% Similarity=-0.052 Sum_probs=31.5
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQ 142 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~ir 142 (282)
..++.+. ...||...|+..+....+.-..+-..+.+....+|
T Consensus 262 if~L~~a-i~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r 303 (598)
T PRK09111 262 VIDLFEA-LMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTH 303 (598)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3445553 34589999999999998887888778877776666
No 244
>PRK06771 hypothetical protein; Provisional
Probab=29.54 E-value=1.2e+02 Score=23.65 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC--------HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhh
Q 023407 66 LDSMRTKIEDELKKLDDRIADAEENLG--------ESEVREAHLAKSLFYIQIGDKEKALEQLKVTE 124 (282)
Q Consensus 66 ~~~~~~~n~~~l~~Le~~lk~~~~nl~--------~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~ 124 (282)
+..++++.+.++++++..|+..-+..| ++++|. +.+-|..-+|+|.|+..-
T Consensus 21 l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~~~~~~~e~~~--------Li~~Gkki~AIK~~Re~t 79 (93)
T PRK06771 21 LTKIEKKTDARLKRMEDRLQLITKEMGIVDREPPVNKELRQ--------LMEEGQTVTAVKRVREAF 79 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHH--------HHHcCCchHHHHHHHHHc
Confidence 456777888899999999987666555 344443 568899999999998764
No 245
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=29.26 E-value=1.5e+02 Score=29.69 Aligned_cols=67 Identities=10% Similarity=0.036 Sum_probs=44.8
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~ 162 (282)
-..++..+|.-|.+.|++++|+.+|+++.+.......--..+.++--+-...|+.+....++.+|-.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567888999999999999999999999987666542212223333333344566666666655544
No 246
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=29.09 E-value=4.2e+02 Score=27.07 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=34.0
Q ss_pred cCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh
Q 023407 128 VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE 166 (282)
Q Consensus 128 ~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ 166 (282)
+.|=.-|.++|--.|.++.-++-....++++|++.++|.
T Consensus 463 nQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR 501 (673)
T COG4192 463 NQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTER 501 (673)
T ss_pred cCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHH
Confidence 344556788999999999999999999999999999986
No 247
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=29.02 E-value=2.3e+02 Score=31.09 Aligned_cols=100 Identities=13% Similarity=-0.008 Sum_probs=77.6
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
++..-||.||+--||++.+...+.-+..++....-+-+-++.+-|.---.||+.....|--++.+.-. .|=+-
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~-------d~~~l 343 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN-------DNFVL 343 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-------CCccc
Confidence 46777999999999999999999999888877777778899999999999999999988888776432 22334
Q ss_pred HHHHHHHh--hcccHHHHHHHhhcccccc
Q 023407 178 VYEGLYCM--STRNFKKAASLFLDSISTF 204 (282)
Q Consensus 178 vy~gL~~l--~~r~f~~AA~lfld~~~tf 204 (282)
.+.||..| ..++++.|...|=.+.-+.
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQL 372 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence 45566555 4677888887776665443
No 248
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=28.99 E-value=3.6e+02 Score=23.85 Aligned_cols=100 Identities=17% Similarity=0.088 Sum_probs=66.6
Q ss_pred HHHHhCCHHHHHHHHHHhhccc-cCchhHHHHHHHHHHHHH---HccChHHHHHHHHHHHHHHhh-------CCCcchhh
Q 023407 106 FYIQIGDKEKALEQLKVTESKT-VAVGQKMDLVFYTLQLGF---FYMDFDLISKSIDKAKSLFEE-------GGDWERKN 174 (282)
Q Consensus 106 ~~~~iGd~~~A~k~y~~~~e~~-~s~~~~id~~l~~irv~~---~~~d~~~v~~~i~kA~~~~e~-------ggdw~rrn 174 (282)
-|...-+++.|++.|.-+.--. ...+....+....+|++= ..||...-+.++.+|-..-++ ++...-..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 4445668899999988765432 222233344444445554 447777888888888665543 23344456
Q ss_pred HHHHHHHHHHhhcccHHHHHHHhhccccccc
Q 023407 175 RLKVYEGLYCMSTRNFKKAASLFLDSISTFT 205 (282)
Q Consensus 175 rLkvy~gL~~l~~r~f~~AA~lfld~~~tft 205 (282)
++--..|.-....|++++|.+-|-.++..-.
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 7777788888899999999999988876543
No 249
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=28.69 E-value=1.8e+02 Score=23.96 Aligned_cols=42 Identities=26% Similarity=0.562 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCC
Q 023407 63 QSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGD 112 (282)
Q Consensus 63 ~~~~~~~~~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd 112 (282)
++-++.++....++++.|+.+.+.. +-|+.-+ ++..|.+-||
T Consensus 83 ~~~LEe~ke~l~k~i~~les~~e~I-------~~~m~~L-K~~LYaKFgd 124 (131)
T KOG1760|consen 83 QDQLEEKKETLEKEIEELESELESI-------SARMDEL-KKVLYAKFGD 124 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-HHHHHHHhcc
Confidence 4667777777788888888777653 3344433 5677888886
No 250
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.46 E-value=2.7e+02 Score=28.47 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=59.0
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHH-HHHHHHHHHHccChHHHHHHHHHHHHHHhh-CCCc-----
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDL-VFYTLQLGFFYMDFDLISKSIDKAKSLFEE-GGDW----- 170 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~-~l~~irv~~~~~d~~~v~~~i~kA~~~~e~-ggdw----- 170 (282)
+-+.-+|-|-+..|-+++|...|..+...+ +.+|| .|...-+++-+=+......+- +.+|. |.+.
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t----~~~dl~a~~nlnlAi~YL~~~~~ed~y----~~ld~i~p~nt~s~s 439 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLT----ESIDLQAFCNLNLAISYLRIGDAEDLY----KALDLIGPLNTNSLS 439 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhh----hHHHHHHHHHHhHHHHHHHhccHHHHH----HHHHhcCCCCCCcch
Confidence 456678888999999999999988876554 44444 233333333332211111111 11121 2221
Q ss_pred --chhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 171 --ERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 171 --~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
-.+|-.+-..|++.+-+++|.+|-..+-+++-
T Consensus 440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 12466777889999999999999888777754
No 251
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.11 E-value=3.2e+02 Score=28.04 Aligned_cols=46 Identities=11% Similarity=0.019 Sum_probs=34.0
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHH-HHHHHHHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVF-YTLQLGFF 146 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l-~~irv~~~ 146 (282)
+.++.+... -||...+++......++-......+++.. .+.|+.++
T Consensus 249 v~~ll~Al~-~~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r~~~~ 295 (546)
T PRK14957 249 VYSIINAII-DNDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIY 295 (546)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 334444433 48999999999998888888888898888 77775544
No 252
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.64 E-value=7.1e+02 Score=25.82 Aligned_cols=47 Identities=9% Similarity=-0.056 Sum_probs=38.1
Q ss_pred hhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccC
Q 023407 102 AKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 102 ~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d 149 (282)
++.+... .||...|+..+.....+...+.+.+++....+|--+...+
T Consensus 253 ~L~dai~-~~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~ 299 (614)
T PRK14971 253 RLTDALL-AGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKD 299 (614)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 3444443 4799999999999999999999999999999998877544
No 253
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=27.24 E-value=4e+02 Score=22.77 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=43.3
Q ss_pred CHHHHHHHHHhhhhHHHHhCC--------------HHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHH
Q 023407 92 GESEVREAHLAKSLFYIQIGD--------------KEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSI 157 (282)
Q Consensus 92 ~~eeIr~a~~~la~~~~~iGd--------------~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i 157 (282)
.+++||.||..--++..+-+- ++.-++....+.+..-.....|-+.++.+ -||...|...+
T Consensus 75 sE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL-----~~dl~~v~~~~ 149 (159)
T PF05384_consen 75 SEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYL-----SGDLQQVSEQI 149 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHH
Confidence 678899998776666555443 44445555555554444444444443333 38999999999
Q ss_pred HHHHHHHh
Q 023407 158 DKAKSLFE 165 (282)
Q Consensus 158 ~kA~~~~e 165 (282)
+.|+.--+
T Consensus 150 e~~~~~q~ 157 (159)
T PF05384_consen 150 EDAQQKQQ 157 (159)
T ss_pred HHHHHhhh
Confidence 88876543
No 254
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.23 E-value=2.3e+02 Score=27.98 Aligned_cols=86 Identities=19% Similarity=0.241 Sum_probs=55.3
Q ss_pred HHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhccC---ChHHHHHH-----ccC-ChhHHHhhcCCch
Q 023407 181 GLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISL---DRVSLKQK-----VVD-APEILTVIGKIPY 251 (282)
Q Consensus 181 gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLasl---~R~eLk~k-----vl~-~~e~~~~l~~~P~ 251 (282)
.+|.|.++|-++|-.+.=|--|| ||.+++.=||+-+-... +|.-||.- ++. |... -...|.
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~Pt-------tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~e---cDTIpG 361 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLDPT-------TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALE---CDTIPG 361 (557)
T ss_pred eeeecccccHHHHHHHHhhcCCC-------ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccc---cccccc
Confidence 56888999999998888777664 56777777777665443 57777631 122 2111 124566
Q ss_pred HHHHHHHHh-cCChhHHHHHHHHhhh
Q 023407 252 LSEFLNSLY-DCQYKSFFSAFGEKRS 276 (282)
Q Consensus 252 l~~ll~sfy-~~~Y~~~~~~L~~~~~ 276 (282)
=....++|+ .-+|.+.+..|..+++
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~s 387 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIES 387 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544 4478888888887775
No 255
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.05 E-value=3e+02 Score=27.63 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=32.5
Q ss_pred HhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHc
Q 023407 109 QIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY 147 (282)
Q Consensus 109 ~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~ 147 (282)
..||...|++.+.+..+.-..+...+++....+|--+..
T Consensus 257 ~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~ 295 (486)
T PRK14953 257 LESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLN 295 (486)
T ss_pred HCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 358999999999999988888889999998888865443
No 256
>PRK10316 hypothetical protein; Provisional
Probab=26.92 E-value=2.1e+02 Score=25.69 Aligned_cols=145 Identities=10% Similarity=0.069 Sum_probs=83.6
Q ss_pred hccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh-CCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 124 ESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE-GGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 124 ~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~-ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.++-...|+..=.=..+-|.+||.|+.+..++.+..|+.++.. ..||.+-.|- -.+.+-.+...+=+-.
T Consensus 44 ~~~lS~dG~~A~~DI~~AR~Alf~G~~~~Ak~ll~~A~~~l~~a~~D~~~f~ka----------~~~~p~~~d~wlPVd~ 113 (209)
T PRK10316 44 AERISEQGLYAMRDVQVARLALFHGDPEKAKELTNQASALLSDDSTDWAKFAKP----------DKKAPVNGDQYIVINA 113 (209)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhccHHHHHhc----------cccCCCCCCceEEeCC
Confidence 3344455555555567789999999999999999999999976 4578654332 2222222233455555
Q ss_pred cccccc--ccCch-hHHHHHHHHHhccCChHHHHHHc----cCChhHHHhhcCCch---HHHHHHHHhcCChhHHHHHHH
Q 023407 203 TFTTYE--LFPYD-TFIFYTVLTSIISLDRVSLKQKV----VDAPEILTVIGKIPY---LSEFLNSLYDCQYKSFFSAFG 272 (282)
Q Consensus 203 tft~~e--lis~~-d~a~Y~~l~aLasl~R~eLk~kv----l~~~e~~~~l~~~P~---l~~ll~sfy~~~Y~~~~~~L~ 272 (282)
+|+-+| ..+|+ .=++=..=.-|.+=+|..--..+ +|=.....+++..|. |-+...-+-+.+|.+--..|.
T Consensus 114 e~~l~ed~~~tp~K~~Ava~AN~~Lk~Gd~~~A~e~LklAgvdv~~~~al~PL~qT~~~V~~A~~ll~~gkyyeA~~aLk 193 (209)
T PRK10316 114 SVGISEDYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNAVADAQKLLDKGKYYEANLALK 193 (209)
T ss_pred eEEecccccCChhHHHHHHHHHHHHHCCCHHHHHHHHHHcCcchhhHhHhcCchhhHHHHHHHHHHHhCCChhHHHHHHH
Confidence 666555 55554 22333333334444554322211 222333333443332 555555566689888888888
Q ss_pred Hhhhhh
Q 023407 273 EKRSDA 278 (282)
Q Consensus 273 ~~~~~~ 278 (282)
..++..
T Consensus 194 ~a~d~i 199 (209)
T PRK10316 194 GAEDGI 199 (209)
T ss_pred hhccce
Confidence 877643
No 257
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=25.95 E-value=1.2e+02 Score=30.74 Aligned_cols=97 Identities=19% Similarity=0.164 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh-CCCcc
Q 023407 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE-GGDWE 171 (282)
Q Consensus 93 ~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~-ggdw~ 171 (282)
.+.-|.-..-.|....+.|.+.+|+..|.++.|. ...+...|..| +-+...|.. ....+++. |..--
T Consensus 421 ~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~-~~v~~i~~~ll---~~~~~~~~~--------~~~~ll~~i~~~~~ 488 (566)
T PF07575_consen 421 EDVAREICKILGQRLLKEGRYGEALSWFIRAGDY-SLVTRIADRLL---EEYCNNGEP--------LDDDLLDNIGSPML 488 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHHH---HHHhcCCCc--------ccHHHHHHhcchhh
Confidence 3455666778899999999999999999999986 44445555544 222222210 01111111 11112
Q ss_pred hhhHHHHHHHH---H-HhhcccHHHHHHHhhccc
Q 023407 172 RKNRLKVYEGL---Y-CMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 172 rrnrLkvy~gL---~-~l~~r~f~~AA~lfld~~ 201 (282)
.+.+|..|.-+ + .+..++|++||++++.-+
T Consensus 489 ~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll 522 (566)
T PF07575_consen 489 LSQRLSFLAKYREFYELYDEGDFREAASLLVSLL 522 (566)
T ss_dssp ----------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33455444433 2 346799999999988765
No 258
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=25.89 E-value=3.5e+02 Score=21.71 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhhH---------------HHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHH
Q 023407 93 ESEVREAHLAKSLF---------------YIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQ 142 (282)
Q Consensus 93 ~eeIr~a~~~la~~---------------~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~ir 142 (282)
--++|.+++++.-| -.+..|+.-|++.+.-+.+||.+.+..-.-++.-||
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqElk 90 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQELK 90 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHHh
Confidence 35777777766432 346778999999999999999877655555554444
No 259
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=25.54 E-value=1.2e+02 Score=32.16 Aligned_cols=73 Identities=21% Similarity=0.107 Sum_probs=60.3
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcc
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 171 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~ 171 (282)
=+.++..++--|.+.|++.+|.+++.++..+. .+.+.|..|-+-|+..-|.|+.+.+-..+-..+...+.|.+
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn---~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~ 624 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN---YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDE 624 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC---CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccch
Confidence 35688899999999999999999999998654 55678888999999999999999988888877776655443
No 260
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=25.38 E-value=85 Score=33.01 Aligned_cols=68 Identities=18% Similarity=0.121 Sum_probs=44.8
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCch---hHHHHHHH------HHHHHHH------ccChHHHHHHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG---QKMDLVFY------TLQLGFF------YMDFDLISKSIDKAKSL 163 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~---~~id~~l~------~irv~~~------~~d~~~v~~~i~kA~~~ 163 (282)
-+..||+||.++|++++|-..|.++....++.. ++.|.+.. -.++++. ..|-..+.-++.+-+++
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~l 329 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESL 329 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHH
Confidence 467899999999999999999999887665543 44454322 2333321 11333456677777777
Q ss_pred Hhh
Q 023407 164 FEE 166 (282)
Q Consensus 164 ~e~ 166 (282)
++.
T Consensus 330 m~r 332 (835)
T KOG2047|consen 330 MNR 332 (835)
T ss_pred Hhc
Confidence 765
No 261
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=25.07 E-value=2.2e+02 Score=30.13 Aligned_cols=71 Identities=11% Similarity=0.064 Sum_probs=60.9
Q ss_pred HHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccc-cCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Q 023407 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKT-VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 95 eIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~-~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e 165 (282)
+....+..+|+||-..||++.|-..|.++..-. .+..+-..++..+..+-+-+.|+....+.+.+|-..+-
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~ 456 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPT 456 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Confidence 456678999999999999999999999987543 55667788899999999999999999999999987764
No 262
>PRK05755 DNA polymerase I; Provisional
Probab=24.73 E-value=2.4e+02 Score=30.44 Aligned_cols=54 Identities=13% Similarity=0.330 Sum_probs=40.0
Q ss_pred HHHHHHHHHhc-CCHHHHHHH----------HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023407 34 KGEVFSMVKAH-DMASFYETL----------VAESVLEMDQSVLDSMRTKIEDELKKLDDRIADA 87 (282)
Q Consensus 34 ~~~ll~~ik~~-~m~~~Y~~l----------~~~~~~~~D~~~~~~~~~~n~~~l~~Le~~lk~~ 87 (282)
...+.+.+++. .....|..+ .+..|+++|.++++++..+.++++++++.++.+.
T Consensus 462 ~~~L~~~L~~~~~l~~l~~eiE~p~~~~l~~me~~Gi~vD~~~~~~~~~~~~~~~~~l~~~~~~~ 526 (880)
T PRK05755 462 HEVLKPKLLEEPGLLELYEEIELPLVPVLARMERNGIKVDREYLKELSAELAQRLAELEQEIYEL 526 (880)
T ss_pred HHHHHHHHHhcccHHHHHHHhhchHHHHHHHHHhcCeEeCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554 566666642 2234899999999999999999999999999754
No 263
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=24.67 E-value=6.7e+02 Score=24.54 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=66.0
Q ss_pred HhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHH
Q 023407 101 LAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYE 180 (282)
Q Consensus 101 ~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~ 180 (282)
.-+|..+...++-.+|++...++....... .++..-..+.-+-.++++.......+|-.+. .+-++++.
T Consensus 204 ~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~ 272 (395)
T PF09295_consen 204 VLLARVYLLMNEEVEAIRLLNEALKENPQD---SELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWY 272 (395)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHH
Confidence 347778888889999999999988544433 6777777788888888877777777775543 22333333
Q ss_pred --HHHHhhcccHHHHHHHhhccccccc
Q 023407 181 --GLYCMSTRNFKKAASLFLDSISTFT 205 (282)
Q Consensus 181 --gL~~l~~r~f~~AA~lfld~~~tft 205 (282)
+-.++..++|+.|. +-|.+.|-++
T Consensus 273 ~La~~Yi~~~d~e~AL-laLNs~Pm~~ 298 (395)
T PF09295_consen 273 QLAECYIQLGDFENAL-LALNSCPMLT 298 (395)
T ss_pred HHHHHHHhcCCHHHHH-HHHhcCcCCC
Confidence 45677899999998 6666666554
No 264
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.67 E-value=3.5e+02 Score=27.01 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=77.6
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCch-hHHH
Q 023407 139 YTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYD-TFIF 217 (282)
Q Consensus 139 ~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~-d~a~ 217 (282)
.++|.-+.++-++...+.+.|..- ++... ..--.|.--|.|--.+-+.+|+.|.+.|+.++---+-.-.+.+. .+..
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~-pe~~s-nne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k 291 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVY-PEAAS-NNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNK 291 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccC-ccccc-cHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHH
Confidence 355666666666655555555431 22111 11346788999999999999999999999996432222234443 3444
Q ss_pred HHHHHHhccCChHHHHHHccCChhHHHhhcCCchHHHHHHHHhcCChhHHHHHHHHhhhhhhc
Q 023407 218 YTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFGEKRSDACA 280 (282)
Q Consensus 218 Y~~l~aLasl~R~eLk~kvl~~~e~~~~l~~~P~l~~ll~sfy~~~Y~~~~~~L~~~~~~~~~ 280 (282)
..++..|..=+=+|. .|..-|..+.-| .|.. ++.++-=.++-+.|-+.|...++.+++
T Consensus 292 ~~ivv~ll~geiPer--s~F~Qp~~~ksL--~~Yf-~Lt~AVr~gdlkkF~~~leq~k~~f~~ 349 (493)
T KOG2581|consen 292 LMIVVELLLGEIPER--SVFRQPGMRKSL--RPYF-KLTQAVRLGDLKKFNETLEQFKDKFQA 349 (493)
T ss_pred HHHHHHHHcCCCcch--hhhcCccHHHHH--HHHH-HHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 555555555444432 122223222211 1222 444555567888888888888777654
No 265
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=24.58 E-value=3.1e+02 Score=28.12 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCHH--HHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCch
Q 023407 70 RTKIEDELKKLDDRIADAEENLGES--EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG 131 (282)
Q Consensus 70 ~~~n~~~l~~Le~~lk~~~~nl~~e--eIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~ 131 (282)
..+.+.++.+|+.++++++.++-+- +.+.+-.++=++...+++++..+....+-..+|..--
T Consensus 108 ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~ 171 (546)
T KOG0977|consen 108 RAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL 171 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 5567788999999999999988876 6666667777788888999888887777666665443
No 266
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=24.44 E-value=6.6e+02 Score=24.39 Aligned_cols=110 Identities=10% Similarity=0.014 Sum_probs=71.8
Q ss_pred CHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhh-ccccCch-hHHHHHHHHHHHHHHccChH--------HHHHHHHHHH
Q 023407 92 GESEVREAHLAKSLFYIQIGDKEKALEQLKVTE-SKTVAVG-QKMDLVFYTLQLGFFYMDFD--------LISKSIDKAK 161 (282)
Q Consensus 92 ~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~-e~~~s~~-~~id~~l~~irv~~~~~d~~--------~v~~~i~kA~ 161 (282)
..+++=..++.+||++.=.||++-|...|.-.+ |+-.... .-.--+..++=++++++... .+..+++.|-
T Consensus 203 ~~~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~ 282 (414)
T PF12739_consen 203 SADSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAY 282 (414)
T ss_pred CCCChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHH
Confidence 445677788999999999999999999999866 4432111 12233666677888887755 6677888876
Q ss_pred HHHhhCCC-------cchhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 162 SLFEEGGD-------WERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 162 ~~~e~ggd-------w~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
..-...+. +..|.=+ ..+-.+...+.|.+|+..++.....
T Consensus 283 ~~Y~~~~~~~~~~~~~a~R~~l--l~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 283 YTYLKSALPRCSLPYYALRCAL--LLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHhhhccccccccchHHHHH--HHHHHHHhcCccHHHHHHHHHHHHH
Confidence 65554221 2233222 2222345677888888887776543
No 267
>PF01895 PhoU: PhoU domain; InterPro: IPR008170 This family contains phosphate regulatory proteins including PhoU. PhoU proteins are known to play a role in the regulation of phosphate uptake. The PhoU domain is composed of a three helix bundle []. The PhoU protein contains two copies of this domain. The domain binds to an iron cluster via its conserved E/DXXXD motif. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect; suggesting that the protein has some secondary function []. ; PDB: 2I0M_A 1T72_B 1T8B_A 1SUM_B 1VCT_A 2BKN_A 2BKP_A 2BKO_A.
Probab=24.38 E-value=2.6e+02 Score=19.66 Aligned_cols=54 Identities=20% Similarity=0.208 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-H---H---hhCHHHHHHHHHhhhhHHHHhCCHHHH
Q 023407 62 DQSVLDSMRTKIEDELKKLDDRIADA-E---E---NLGESEVREAHLAKSLFYIQIGDKEKA 116 (282)
Q Consensus 62 D~~~~~~~~~~n~~~l~~Le~~lk~~-~---~---nl~~eeIr~a~~~la~~~~~iGd~~~A 116 (282)
|.++.+++. +.+.+++++..++..+ - . ..++..--.++...+.++-++||.-..
T Consensus 23 d~~~a~~i~-~~e~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lERigD~~~n 83 (88)
T PF01895_consen 23 DSELAQEII-QLEEEIDELYREIRRQILKILKNQNPLEELRELVGLLRIARDLERIGDHAVN 83 (88)
T ss_dssp -HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 3355555555555333 1 1 111112234577888888888886543
No 268
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.33 E-value=6.8e+02 Score=24.51 Aligned_cols=120 Identities=12% Similarity=0.104 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHH--HH--HHHHHHHHH
Q 023407 71 TKIEDELKKLDDRIADAE-ENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKM--DL--VFYTLQLGF 145 (282)
Q Consensus 71 ~~n~~~l~~Le~~lk~~~-~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~i--d~--~l~~irv~~ 145 (282)
++.+..++.++++++.-. .|..+.+.-.--.=.++|..++|-++.|...-.++ ....-+ |+ -...|+-++
T Consensus 89 ~~iksRid~m~e~~~~d~~~~~~~w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s-----~ledlvD~Dv~~~~~~I~~sl 163 (389)
T KOG0396|consen 89 KRIKSRIDFMHEEISSDTPANSRKWPRNKLDRFVVDHMLRNGYFGAAVLLGKKS-----QLEDLVDSDVYKRAYGIRDSL 163 (389)
T ss_pred HHHHHHHHHHHHHhcccCchHHHHhHHHHHHHHHHHHHHHcCchhHHHHHHHhh-----hhhhhHhHHHHHHHHHHHHHH
Confidence 344455566665554433 56666666666777899999999999998866442 222222 33 345689999
Q ss_pred HccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHH
Q 023407 146 FYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASL 196 (282)
Q Consensus 146 ~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~l 196 (282)
-.|+...+..+.++-+..+.+-+. ..-+.++.=+.+-++..++|.+|-..
T Consensus 164 l~~~l~~~Lswc~ehk~~LkK~~S-~lEf~lRlQefIELi~~~~~~~Ai~~ 213 (389)
T KOG0396|consen 164 LAGELEPALSWCKEHKVELKKEES-SLEFQLRLQEFIELIKVDNYDKAIAF 213 (389)
T ss_pred HhcchHHHHHHHHHHHHHHHhccc-hhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999888887764211 12355556677777888888877543
No 269
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=23.93 E-value=6.4e+02 Score=24.08 Aligned_cols=96 Identities=19% Similarity=0.087 Sum_probs=59.7
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHH-HHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKM-DLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~i-d~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..+...|..+.+.|+.+.|.+...+..+.-....... ..+...+++. -+|.....+.++++.... .+|.+ -.+
T Consensus 264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~--~~~~~~~~~~~e~~lk~~--p~~~~--~~l 337 (409)
T TIGR00540 264 ALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK--PEDNEKLEKLIEKQAKNV--DDKPK--CCI 337 (409)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC--CCChHHHHHHHHHHHHhC--CCChh--HHH
Confidence 4566789999999999999999999988655443221 2222222222 245554544444444321 12221 245
Q ss_pred HHHHHHHHhhcccHHHHHHHhhc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLD 199 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld 199 (282)
--..|-.++..|+|.+|-+.|=.
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHH
Confidence 55677777899999999997763
No 270
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=23.78 E-value=4.9e+02 Score=22.68 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=14.0
Q ss_pred HHHhcCCHHHHHHHHHhc
Q 023407 40 MVKAHDMASFYETLVAES 57 (282)
Q Consensus 40 ~ik~~~m~~~Y~~l~~~~ 57 (282)
++|+++...-|+.+|-++
T Consensus 7 elKKt~lsknYkavCleL 24 (205)
T PF15079_consen 7 ELKKTNLSKNYKAVCLEL 24 (205)
T ss_pred hhhccCcchhHHHHHHhc
Confidence 456677777899999886
No 271
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=23.71 E-value=1.2e+02 Score=18.65 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHHHH
Q 023407 61 MDQSVLDSMRTKIE 74 (282)
Q Consensus 61 ~D~~~~~~~~~~n~ 74 (282)
+|++|++-++...+
T Consensus 1 LD~EW~~Li~eA~~ 14 (30)
T PF08671_consen 1 LDEEWVELIKEAKE 14 (30)
T ss_dssp --HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 48888888776544
No 272
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=23.60 E-value=50 Score=26.43 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhccccCchhHHHHHH-------HHHHHHHHccChHHHHHHHHHHHHHHh
Q 023407 114 EKALEQLKVTESKTVAVGQKMDLVF-------YTLQLGFFYMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 114 ~~A~k~y~~~~e~~~s~~~~id~~l-------~~irv~~~~~d~~~v~~~i~kA~~~~e 165 (282)
.+|..+|.+..-.+.++...+-|++ ...+.++..||+.....++.||..++.
T Consensus 2 ~n~~~~Y~~~~v~tasp~~Li~~Lyd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~ 60 (122)
T PF02561_consen 2 QNAYQAYRQNAVATASPHQLILMLYDGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIIT 60 (122)
T ss_dssp --CGGGCSGTTGGG-HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3566677776656666666666543 233344455666666666666666654
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=23.58 E-value=86 Score=30.89 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKM 134 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~i 134 (282)
..+.-+||.|...||.+.|+.-|+.+..--++.|.+|
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrm 283 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRM 283 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhH
No 274
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=23.51 E-value=69 Score=27.60 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=29.4
Q ss_pred cCChHHHHHHccCChhHHHhhcC--CchHHHHHHHHhc
Q 023407 226 SLDRVSLKQKVVDAPEILTVIGK--IPYLSEFLNSLYD 261 (282)
Q Consensus 226 sl~R~eLk~kvl~~~e~~~~l~~--~P~l~~ll~sfy~ 261 (282)
++||+.|.+.|..||+-+..|+. .|.+++-+..+..
T Consensus 62 ~idR~~L~~~vF~d~~~~~~L~~iihP~I~~~~~~~~~ 99 (180)
T PF01121_consen 62 EIDRKKLAEIVFSDPEKLKKLENIIHPLIREEIEKFIK 99 (180)
T ss_dssp SB-HHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 47999999999999999999887 5888887776544
No 275
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=23.13 E-value=2.4e+02 Score=23.16 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHH------HhhccccCchhHHHHHHHH
Q 023407 67 DSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLK------VTESKTVAVGQKMDLVFYT 140 (282)
Q Consensus 67 ~~~~~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~------~~~e~~~s~~~~id~~l~~ 140 (282)
.......+.+..+|+.+++..+. .+.=+.+-|+++.|..+.. +..+.+.+....++-...-
T Consensus 7 k~~~~~L~~~~~~le~~i~~~~~-------------~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ 73 (171)
T PF03357_consen 7 KKTIRRLEKQIKRLEKKIKKLEK-------------KAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQ 73 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHH-------------HHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666665432 2233345566666655443 3444444444455544444
Q ss_pred HHHH
Q 023407 141 LQLG 144 (282)
Q Consensus 141 irv~ 144 (282)
|..+
T Consensus 74 ie~a 77 (171)
T PF03357_consen 74 IETA 77 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 276
>PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional
Probab=23.07 E-value=2.8e+02 Score=28.20 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=27.1
Q ss_pred cCCCCCHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 023407 57 SVLEMDQSVLDSMRTKIE----------DELKKLDDRIADA 87 (282)
Q Consensus 57 ~~~~~D~~~~~~~~~~n~----------~~l~~Le~~lk~~ 87 (282)
.|+++|.+..+++..+.. +++++|+.++.+.
T Consensus 176 ~Gi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 216 (553)
T PRK14975 176 AGLPWDTDVHEALLAELLGPRPAAGGRPARLAELAAEIREA 216 (553)
T ss_pred hCeEeCHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHH
Confidence 389999999999999988 8889999998653
No 277
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=23.00 E-value=4.5e+02 Score=21.99 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=69.2
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh--CCCcchhhHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE--GGDWERKNRL 176 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~--ggdw~rrnrL 176 (282)
.+...|.=..+-|++++|.+.+......=..+...=..-|.++-.-+.-+++......+++=-.+-=. ..||.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa----- 86 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA----- 86 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH-----
Confidence 35566777789999999999999988766666666677888899988899988776655554333100 11221
Q ss_pred HHHHHHHHhhccc---------------HHHHHHHhhccccccc
Q 023407 177 KVYEGLYCMSTRN---------------FKKAASLFLDSISTFT 205 (282)
Q Consensus 177 kvy~gL~~l~~r~---------------f~~AA~lfld~~~tft 205 (282)
.-..||..+.+.. .+.|...|-+.+..|.
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 1224666666655 6777777777776665
No 278
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=22.99 E-value=78 Score=27.54 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=29.3
Q ss_pred cCChHHHHHHccCChhHHHhhcC--CchHHHHHHHHh
Q 023407 226 SLDRVSLKQKVVDAPEILTVIGK--IPYLSEFLNSLY 260 (282)
Q Consensus 226 sl~R~eLk~kvl~~~e~~~~l~~--~P~l~~ll~sfy 260 (282)
++||+.|.+.|..+|+.+..++. .|.+++-+..++
T Consensus 63 ~idR~~L~~~vF~~~~~~~~le~i~hP~v~~~~~~~~ 99 (200)
T PRK14734 63 TLDRAGLAAKAFASPEQTALLNAITHPRIAEETARRF 99 (200)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHhhCHHHHHHHHHHH
Confidence 58999999999999999999886 588877665543
No 279
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=22.97 E-value=1.3e+02 Score=21.59 Aligned_cols=32 Identities=3% Similarity=0.004 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 023407 29 EKVGLKGEVFSMVKAHDMASFYETLVAESVLE 60 (282)
Q Consensus 29 ~~~~a~~~ll~~ik~~~m~~~Y~~l~~~~~~~ 60 (282)
.+.+.++.+.+.+.++-..|-++++++.+|+.
T Consensus 7 rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~ 38 (65)
T PF01726_consen 7 RQKEVLEFIREYIEENGYPPTVREIAEALGLK 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHSS---HHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCC
Confidence 45677788888888899999999999999986
No 280
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=22.92 E-value=6e+02 Score=23.38 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=31.1
Q ss_pred hCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHc
Q 023407 110 IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY 147 (282)
Q Consensus 110 iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~ 147 (282)
.||...|++.+.+..+....+-..+.+....+|--+..
T Consensus 256 ~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~ 293 (355)
T TIGR02397 256 NKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLI 293 (355)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 38999999999999888788888888888888865443
No 281
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=22.80 E-value=1e+03 Score=26.13 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=67.0
Q ss_pred ccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccccccc
Q 023407 127 TVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTT 206 (282)
Q Consensus 127 ~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~ 206 (282)
.+.+.+.+-+..-.+.-++..++-+.+...++.++...- ..++.-++.+|+-.++|-.||.++|.++| .. |+-
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~ 832 (932)
T PRK13184 760 NTDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVS---EEERHDHLLVYEIQAHLWNRDLKKAYKLL-NR---YPL 832 (932)
T ss_pred hCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccC---ChhhhhhhhHHHHHHHHHhccHHHHHHHH-Hh---CCh
Confidence 355666677777777888888998888888888877653 45677999999999999999999999999 43 321
Q ss_pred cc-cc-CchhHHHHHHHHHh
Q 023407 207 YE-LF-PYDTFIFYTVLTSI 224 (282)
Q Consensus 207 ~e-li-s~~d~a~Y~~l~aL 224 (282)
+. +- +..=|+.||--.|+
T Consensus 833 ~~~~~~~~~~~~~~~~~~~~ 852 (932)
T PRK13184 833 DLLLDEYSEAFVLYGCYLAL 852 (932)
T ss_pred hhhccccchHHHHHHHHHHh
Confidence 11 11 12347788876664
No 282
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=22.59 E-value=1.1e+02 Score=33.43 Aligned_cols=51 Identities=22% Similarity=0.278 Sum_probs=38.7
Q ss_pred HhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCC
Q 023407 101 LAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGD 169 (282)
Q Consensus 101 ~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggd 169 (282)
.=-|.|.-+.|+.+.|+..|..++|| |+++||--+.|+ ++||..+.++.||
T Consensus 916 ~WWgqYlES~GemdaAl~~Y~~A~D~-----------fs~VrI~C~qGk-------~~kAa~iA~esgd 966 (1416)
T KOG3617|consen 916 SWWGQYLESVGEMDAALSFYSSAKDY-----------FSMVRIKCIQGK-------TDKAARIAEESGD 966 (1416)
T ss_pred HHHHHHHhcccchHHHHHHHHHhhhh-----------hhheeeEeeccC-------chHHHHHHHhccc
Confidence 33488999999999999999999986 667777666665 5566666665554
No 283
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=22.44 E-value=4e+02 Score=21.19 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=26.0
Q ss_pred CHHHHHHHHHhhhhH---------------HHHhCCHHHHHHHHHHhhccccCchh
Q 023407 92 GESEVREAHLAKSLF---------------YIQIGDKEKALEQLKVTESKTVAVGQ 132 (282)
Q Consensus 92 ~~eeIr~a~~~la~~---------------~~~iGd~~~A~k~y~~~~e~~~s~~~ 132 (282)
.--|+|++++++.-| -.+..|+.-|++.+.-+.++|.+.+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~ 77 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKE 77 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchh
Confidence 346788888877544 23455666677666666666655433
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=22.38 E-value=4e+02 Score=22.82 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCch---hHHHHHHHHHHHHHHccChHHH
Q 023407 77 LKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG---QKMDLVFYTLQLGFFYMDFDLI 153 (282)
Q Consensus 77 l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~---~~id~~l~~irv~~~~~d~~~v 153 (282)
++.|=..+....=+..+-++-+ |-.+.+.|++.+|+..++..-+...+.. ..+-.||...+ -.+|..+
T Consensus 29 ~e~lL~ALrvLRP~~~e~~~~~-----~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~----D~~Wr~~ 99 (160)
T PF09613_consen 29 AEALLDALRVLRPEFPELDLFD-----GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG----DPSWRRY 99 (160)
T ss_pred HHHHHHHHHHhCCCchHHHHHH-----HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC----ChHHHHH
Confidence 3333344444444444444444 4467799999999999999766543322 22233332211 1245444
Q ss_pred HHHHHHHHHHHhhCCCcchhhHHHHHHHHHHh
Q 023407 154 SKSIDKAKSLFEEGGDWERKNRLKVYEGLYCM 185 (282)
Q Consensus 154 ~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l 185 (282)
|.+.++.|+|.+.+.=.+.-.+.+-+
T Consensus 100 ------A~evle~~~d~~a~~Lv~~Ll~~~~~ 125 (160)
T PF09613_consen 100 ------ADEVLESGADPDARALVRALLARADL 125 (160)
T ss_pred ------HHHHHhcCCChHHHHHHHHHHHhccc
Confidence 77888888888877666666665544
No 285
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=22.33 E-value=1.6e+02 Score=20.96 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 023407 47 ASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRI 84 (282)
Q Consensus 47 ~~~Y~~l~~~~~~~~D~~~~~~~~~~n~~~l~~Le~~l 84 (282)
..|.+.||++.|-++|.. -++.+..+.+++|+.+.
T Consensus 21 ~syL~tL~e~Age~~~~~---LtkaeAs~rId~L~~~~ 55 (57)
T PF11272_consen 21 ASYLKTLSEEAGEPFPDD---LTKAEASERIDELQAQT 55 (57)
T ss_pred HHHHHHHHHHhCCCCCCc---ccHHHHHHHHHHHHHHh
Confidence 358899999999888884 45667777788777653
No 286
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.95 E-value=3.6e+02 Score=27.88 Aligned_cols=81 Identities=10% Similarity=-0.005 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHH--HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHH
Q 023407 79 KLDDRIADAEENLGESEVREA--HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKS 156 (282)
Q Consensus 79 ~Le~~lk~~~~nl~~eeIr~a--~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~ 156 (282)
=++..+.-.++++. |.++.. +..||+-|.+.|-.++|+.+|.++...|+-.-.. .-++-=+-...||.+....+
T Consensus 436 ~f~~~l~~ik~~~~-e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~---~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 436 YFQKALEVIKSVLN-EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAST---HASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHhhhccc-cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhH---HHHHHHHHHHhcChHHHHHH
Confidence 34444444444443 444333 7889999999999999999999999777544322 23333344456788888888
Q ss_pred HHHHHHH
Q 023407 157 IDKAKSL 163 (282)
Q Consensus 157 i~kA~~~ 163 (282)
..||=.+
T Consensus 512 fhKaL~l 518 (611)
T KOG1173|consen 512 FHKALAL 518 (611)
T ss_pred HHHHHhc
Confidence 8777543
No 287
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.76 E-value=6.7e+02 Score=23.51 Aligned_cols=39 Identities=5% Similarity=-0.190 Sum_probs=28.6
Q ss_pred HhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHc
Q 023407 109 QIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY 147 (282)
Q Consensus 109 ~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~ 147 (282)
..||..+|++.+......-..+...+.+....+|--+..
T Consensus 246 ~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~ 284 (367)
T PRK14970 246 LENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVS 284 (367)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 347888889888887776777777777777777655444
No 288
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=21.65 E-value=1.6e+02 Score=17.08 Aligned_cols=27 Identities=41% Similarity=0.378 Sum_probs=19.3
Q ss_pred HHHHhhhhHHHHh-C---CHHHHHHHHHHhh
Q 023407 98 EAHLAKSLFYIQI-G---DKEKALEQLKVTE 124 (282)
Q Consensus 98 ~a~~~la~~~~~i-G---d~~~A~k~y~~~~ 124 (282)
+++..+|.+|..- | |.+.|++.|.++-
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa 32 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAA 32 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 3566777777542 3 8899999988864
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=21.46 E-value=5.4e+02 Score=23.33 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=54.5
Q ss_pred HHhCCHHHHHHHHHHhhcc--ccCchh---HHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHhhCCCcc------hhhH
Q 023407 108 IQIGDKEKALEQLKVTESK--TVAVGQ---KMDLVFYTLQLGFFYM-DFDLISKSIDKAKSLFEEGGDWE------RKNR 175 (282)
Q Consensus 108 ~~iGd~~~A~k~y~~~~e~--~~s~~~---~id~~l~~irv~~~~~-d~~~v~~~i~kA~~~~e~ggdw~------rrnr 175 (282)
.+-||.+-|.-+|.|+... ..++.. ..++|+++-.--+..+ ++......+++|-.+++.++.-+ ..=|
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4678889999988886642 344444 3445555555555567 88899999999999987733221 1256
Q ss_pred HHHHHHHH--HhhcccHH
Q 023407 176 LKVYEGLY--CMSTRNFK 191 (282)
Q Consensus 176 Lkvy~gL~--~l~~r~f~ 191 (282)
++|..+|. ++..+.+.
T Consensus 84 ~~iL~~La~~~l~~~~~~ 101 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYE 101 (278)
T ss_pred HHHHHHHHHHHHcCCChH
Confidence 77777664 44455554
No 290
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.44 E-value=1.8e+02 Score=25.93 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=23.1
Q ss_pred cccccccccccCchhHHHHHHHHHhcc-CChH
Q 023407 200 SISTFTTYELFPYDTFIFYTVLTSIIS-LDRV 230 (282)
Q Consensus 200 ~~~tft~~elis~~d~a~Y~~l~aLas-l~R~ 230 (282)
.-+.|=...=+|+-|++++-.+..+.. ++.+
T Consensus 142 ~~sgflvGd~lT~aDl~i~e~l~~l~~~~~~~ 173 (206)
T KOG1695|consen 142 NKSGFLVGDKLTWADLVIAEHLDTLEELLDPS 173 (206)
T ss_pred CCCCeeecCcccHHHHHHHHHHHHHHHhcCch
Confidence 334465566699999999999999988 4443
No 291
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=21.21 E-value=6.6e+02 Score=23.20 Aligned_cols=114 Identities=14% Similarity=0.227 Sum_probs=86.3
Q ss_pred HhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHH-hhccccCchhHHHHHHHHHHHHHHc------cChHHHHHHHHHHH
Q 023407 89 ENLGESEVREAHLAKSLFYIQIGDKEKALEQLKV-TESKTVAVGQKMDLVFYTLQLGFFY------MDFDLISKSIDKAK 161 (282)
Q Consensus 89 ~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~-~~e~~~s~~~~id~~l~~irv~~~~------~d~~~v~~~i~kA~ 161 (282)
-..+..+ +.++++++-=+++.||++.|+....+ ++-|.+++. +|-.+.+.=++.|+ .|.......+...+
T Consensus 64 ~p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n--~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~ 140 (254)
T COG4105 64 HPFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN--ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFK 140 (254)
T ss_pred CCCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHH
Confidence 5556555 99999999999999999999999998 666666554 67777766666666 58888999999999
Q ss_pred HHHhhCCC------cch-----hhH---HHHHHHHHHhhcccHHHHHHHhhccccccc
Q 023407 162 SLFEEGGD------WER-----KNR---LKVYEGLYCMSTRNFKKAASLFLDSISTFT 205 (282)
Q Consensus 162 ~~~e~ggd------w~r-----rnr---Lkvy~gL~~l~~r~f~~AA~lfld~~~tft 205 (282)
.++..-.+ -.. +++ .-..-|-+.+..|.+-.|+.-|-.++-++.
T Consensus 141 ~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~ 198 (254)
T COG4105 141 ELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYP 198 (254)
T ss_pred HHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccc
Confidence 99886332 211 233 334447788889999999999988887763
No 292
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=21.09 E-value=8.7e+02 Score=24.58 Aligned_cols=28 Identities=14% Similarity=0.098 Sum_probs=12.5
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccc
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKT 127 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~ 127 (282)
|.-||.=|..-||..+|..++.+..-+.
T Consensus 411 w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 411 WDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 3444444444444444444444444443
No 293
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=20.88 E-value=1.4e+02 Score=28.57 Aligned_cols=145 Identities=14% Similarity=0.223 Sum_probs=71.7
Q ss_pred HHHhCCHHHHHHHHHHhhccc-cCchhHHHHHHHHHHHHHHccCh-HHHHHHHHHHHHHHhh------------CCCcch
Q 023407 107 YIQIGDKEKALEQLKVTESKT-VAVGQKMDLVFYTLQLGFFYMDF-DLISKSIDKAKSLFEE------------GGDWER 172 (282)
Q Consensus 107 ~~~iGd~~~A~k~y~~~~e~~-~s~~~~id~~l~~irv~~~~~d~-~~v~~~i~kA~~~~e~------------ggdw~r 172 (282)
+..+.+....-++|.+.++.| ......-+-.+..+. .-+| ++|...+..|..+.+. ...|||
T Consensus 169 fl~i~nih~vr~s~~kl~~~~~~~~~~~~~~~~~~le----~s~Wl~~v~~~L~~a~~i~~~l~~~~~~Vlvh~~dGwDr 244 (353)
T PF06602_consen 169 FLNIPNIHSVRDSFQKLRELCSNTNSDNDDSWLSSLE----SSNWLDHVRSILSGASRIADLLHDEGSSVLVHCSDGWDR 244 (353)
T ss_dssp E-----HHHHHHHHHHHHHHH-SSSS--HHHHHHHHH----HCTHHHHHHHHHHHHHHHHHHHHTT--EEEEECTTSSSH
T ss_pred eeecCcHHHHHHHHHHHHHHhcccccCCchhhhhccc----cCChHHHHHHHHHHHHHHHHHhhccCceEEEEcCCCCcc
Confidence 466778888888999999999 444444444555444 3344 7788777777766553 235998
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCch-hHHHHHHHHHhccCChHHHHHHccCChhHHHhhcC---
Q 023407 173 KNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYD-TFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGK--- 248 (282)
Q Consensus 173 rnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~-d~a~Y~~l~aLasl~R~eLk~kvl~~~e~~~~l~~--- 248 (282)
...+ .+|..|..--|-+.-+=|..-+ -.|-+++. .|+--.+.. +-... ..--.+|-|..||+-
T Consensus 245 t~q~---~sL~ql~lDpyyRTi~GF~~LI----eKeW~~fGH~F~~R~~~~---~~~~~---~~~~~sPvFl~FLDcV~q 311 (353)
T PF06602_consen 245 TSQL---SSLAQLLLDPYYRTIEGFQVLI----EKEWISFGHPFADRCGHG---SSSSS---SSSERSPVFLQFLDCVWQ 311 (353)
T ss_dssp HHHH---HHHHHHHH-CGGGSHHHHHHHH----HHHTTTTT--HHHHHTTT-----SST---TGCC---HHHHHHHHHHH
T ss_pred cHHH---HHHHHHHHHhhhhhHHHHHHHH----HHHHHhcCcchhhhcCCc---ccccc---cccccccchhHHHHHHHH
Confidence 7554 4455444322222111121111 01122222 122211111 11111 122456888888873
Q ss_pred ----Cc--------hHHHHHHHHhcCChhHHH
Q 023407 249 ----IP--------YLSEFLNSLYDCQYKSFF 268 (282)
Q Consensus 249 ----~P--------~l~~ll~sfy~~~Y~~~~ 268 (282)
-| .|..+....|.|+|++|+
T Consensus 312 l~~q~P~~FEFne~~L~~l~~~~~s~~fgtFl 343 (353)
T PF06602_consen 312 LLRQFPTAFEFNESLLIFLADHSYSGRFGTFL 343 (353)
T ss_dssp HHHHSTTT-SB-HHHHHHHHHHHCCTSSTTT-
T ss_pred HHHhCCCceecCHHHHHHHHHHHhcCCCCccc
Confidence 23 377888889999999886
No 294
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=20.70 E-value=8.3e+02 Score=24.16 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCC--HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhCHHHHH
Q 023407 31 VGLKGEVFSMVKAHDM--ASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIA-----------DAEENLGESEVR 97 (282)
Q Consensus 31 ~~a~~~ll~~ik~~~m--~~~Y~~l~~~~~~~~D~~~~~~~~~~n~~~l~~Le~~lk-----------~~~~nl~~eeIr 97 (282)
-+++.+=|.+||++.| ..-|..+-+.+ .-|=.++.+.-+.-.-+.++||+.|+ ..|.++.-.|-|
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~--krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeer 339 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQI--KRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEER 339 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555667777665 24565554432 22333333333333333344444443 333455555556
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQL 120 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y 120 (282)
++|. .|-+.-|.++|++++
T Consensus 340 vaYQ----syERaRdIqEalEsc 358 (455)
T KOG3850|consen 340 VAYQ----SYERARDIQEALESC 358 (455)
T ss_pred HHHH----HHHHHHHHHHHHHHH
Confidence 6653 455566677766664
No 295
>PRK15331 chaperone protein SicA; Provisional
Probab=20.43 E-value=1.6e+02 Score=25.37 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=24.8
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhcccc
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTV 128 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~ 128 (282)
..-.|.-|...||.++|.++|..+.+.|.
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNERTE 136 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHhCcc
Confidence 45678889999999999999999998764
No 296
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=20.40 E-value=58 Score=23.50 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=19.7
Q ss_pred cCchhHHHHHHHHHhccCChHHH
Q 023407 210 FPYDTFIFYTVLTSIISLDRVSL 232 (282)
Q Consensus 210 is~~d~a~Y~~l~aLasl~R~eL 232 (282)
|+..|++--.++|||+.|+=.-|
T Consensus 1 M~i~DilQli~lcALIf~pLgyl 23 (62)
T TIGR03493 1 MNISDILQLVLLCALIFFPLGYL 23 (62)
T ss_pred CCHHHHHHHHHHHHHHHHhHHHH
Confidence 57789999999999999986655
No 297
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=20.36 E-value=4e+02 Score=26.90 Aligned_cols=95 Identities=18% Similarity=0.093 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHH-------HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHH---HH
Q 023407 70 RTKIEDELKKLDDRIADAEENLGESE-------VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLV---FY 139 (282)
Q Consensus 70 ~~~n~~~l~~Le~~lk~~~~nl~~ee-------Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~---l~ 139 (282)
.+.+++-.+.|+...+-|++|+-=.+ .-+++-.||+-|+=.||++.|+.....-.+-.---|.+.-+- -+
T Consensus 161 g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sN 240 (639)
T KOG1130|consen 161 GAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSN 240 (639)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcc
Confidence 45666777778888888888764322 223577889999999999999998765444333334443332 22
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHH
Q 023407 140 TLQLGFFYMDFDLISKSIDKAKSLF 164 (282)
Q Consensus 140 ~irv~~~~~d~~~v~~~i~kA~~~~ 164 (282)
+--.-+|.|++.....|-.++-.+.
T Consensus 241 lgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 241 LGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred cchhhhhhcccHhHHHHHHHHHHHH
Confidence 3334577788887777766665543
No 298
>COG4806 RhaA L-rhamnose isomerase [Carbohydrate transport and metabolism]
Probab=20.09 E-value=2.4e+02 Score=26.79 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 023407 35 GEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIED 75 (282)
Q Consensus 35 ~~ll~~ik~~~m~~~Y~~l~~~~~~~~D~~~~~~~~~~n~~ 75 (282)
-.++++.|.---..-+...|+..+.|++.+|+.+++.=-++
T Consensus 373 lAl~EE~K~~P~~aiW~~yCe~~~VPv~~~WL~~v~~YEk~ 413 (419)
T COG4806 373 LALLEEQKSLPWQAVWEMYCQRHDVPVGSEWLKSVRAYEKE 413 (419)
T ss_pred HHHHHHhhcCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 44566666655666788889999999999999988754333
Done!