Query 023407
Match_columns 282
No_of_seqs 125 out of 350
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:16:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_R RPN7, 26S proteasome re 100.0 1E-56 3.5E-61 433.7 10.8 275 2-276 15-313 (429)
2 3txn_A 26S proteasome regulato 99.9 1.1E-21 3.9E-26 187.5 16.3 175 102-279 104-286 (394)
3 4b4t_P 26S proteasome regulato 99.1 3.5E-10 1.2E-14 109.2 9.4 179 96-278 136-322 (445)
4 4b4t_Q 26S proteasome regulato 98.9 5.8E-08 2E-12 89.4 16.1 197 81-278 119-325 (434)
5 4b4t_O 26S proteasome regulato 98.6 2E-07 7E-12 88.6 12.4 166 107-273 86-272 (393)
6 3ro3_A PINS homolog, G-protein 98.1 0.00016 5.5E-09 55.5 14.7 126 77-202 29-157 (164)
7 3gw4_A Uncharacterized protein 98.0 0.00024 8.2E-09 57.7 14.4 132 73-204 42-177 (203)
8 4gcn_A Protein STI-1; structur 97.9 0.00013 4.3E-09 57.0 11.9 106 94-202 5-111 (127)
9 2ifu_A Gamma-SNAP; membrane fu 97.9 0.00097 3.3E-08 59.4 17.7 178 77-262 96-277 (307)
10 3ro3_A PINS homolog, G-protein 97.8 0.00026 8.8E-09 54.3 11.9 110 94-203 6-118 (164)
11 3ro2_A PINS homolog, G-protein 97.8 0.0072 2.5E-07 51.6 21.5 132 73-204 159-293 (338)
12 3ro2_A PINS homolog, G-protein 97.7 0.0044 1.5E-07 53.0 19.2 130 74-203 200-332 (338)
13 1qqe_A Vesicular transport pro 97.7 0.0093 3.2E-07 52.5 21.4 129 76-204 56-188 (292)
14 3edt_B KLC 2, kinesin light ch 97.7 0.00038 1.3E-08 58.6 11.3 127 77-203 21-156 (283)
15 3sf4_A G-protein-signaling mod 97.7 0.0089 3E-07 53.2 20.7 131 73-203 163-296 (406)
16 4a1s_A PINS, partner of inscut 97.6 0.011 3.9E-07 53.1 21.3 129 75-203 201-332 (411)
17 3sf4_A G-protein-signaling mod 97.6 0.0073 2.5E-07 53.7 19.5 132 73-204 203-337 (406)
18 1elr_A TPR2A-domain of HOP; HO 97.5 0.0023 7.8E-08 47.4 13.0 104 96-202 3-107 (131)
19 3nf1_A KLC 1, kinesin light ch 97.5 0.0089 3.1E-07 51.0 18.2 126 77-202 89-223 (311)
20 4gco_A Protein STI-1; structur 97.5 0.0026 9E-08 49.4 13.3 102 92-202 8-109 (126)
21 3edt_B KLC 2, kinesin light ch 97.5 0.0039 1.3E-07 52.3 15.0 127 77-203 63-198 (283)
22 4a1s_A PINS, partner of inscut 97.5 0.0099 3.4E-07 53.5 18.6 130 75-204 241-373 (411)
23 3gw4_A Uncharacterized protein 97.4 0.0019 6.6E-08 52.2 11.6 109 95-203 24-136 (203)
24 3nf1_A KLC 1, kinesin light ch 97.4 0.0055 1.9E-07 52.4 15.0 111 93-203 65-182 (311)
25 2qfc_A PLCR protein; TPR, HTH, 97.4 0.0019 6.4E-08 56.8 12.2 107 95-201 153-264 (293)
26 3ulq_A Response regulator aspa 97.3 0.0027 9.3E-08 57.5 13.1 111 93-203 139-253 (383)
27 3ulq_A Response regulator aspa 97.3 0.0055 1.9E-07 55.5 14.7 130 74-203 160-293 (383)
28 2ifu_A Gamma-SNAP; membrane fu 97.3 0.0041 1.4E-07 55.2 13.6 130 74-204 53-185 (307)
29 3u3w_A Transcriptional activat 97.3 0.0037 1.3E-07 54.9 12.9 108 95-202 153-265 (293)
30 3q15_A PSP28, response regulat 97.3 0.017 5.7E-07 52.3 17.7 130 74-204 158-291 (378)
31 3q15_A PSP28, response regulat 97.3 0.0035 1.2E-07 56.9 13.1 111 93-203 137-251 (378)
32 3rkv_A Putative peptidylprolyl 97.2 0.0042 1.4E-07 49.4 11.1 101 96-202 10-125 (162)
33 2xev_A YBGF; tetratricopeptide 97.1 0.0057 1.9E-07 45.8 11.0 104 99-205 4-107 (129)
34 2dba_A Smooth muscle cell asso 97.1 0.007 2.4E-07 46.0 11.6 100 97-202 28-127 (148)
35 2l6j_A TPR repeat-containing p 97.1 0.0011 3.9E-08 48.3 6.2 104 98-204 5-108 (111)
36 2qfc_A PLCR protein; TPR, HTH, 97.0 0.012 4E-07 51.6 13.1 106 98-203 116-225 (293)
37 3upv_A Heat shock protein STI1 96.9 0.012 4.1E-07 44.3 11.3 96 98-202 5-100 (126)
38 4g1t_A Interferon-induced prot 96.9 0.009 3.1E-07 55.0 12.2 126 77-202 31-166 (472)
39 2lni_A Stress-induced-phosphop 96.9 0.012 4.3E-07 43.6 10.8 98 96-202 15-112 (133)
40 1qqe_A Vesicular transport pro 96.9 0.037 1.3E-06 48.6 15.5 128 75-202 95-227 (292)
41 3uq3_A Heat shock protein STI1 96.8 0.014 4.8E-07 48.3 11.8 102 97-202 5-107 (258)
42 1elw_A TPR1-domain of HOP; HOP 96.8 0.043 1.5E-06 39.4 13.1 96 98-202 5-100 (118)
43 3sz7_A HSC70 cochaperone (SGT) 96.8 0.017 5.7E-07 45.8 11.4 98 96-202 10-107 (164)
44 1a17_A Serine/threonine protei 96.8 0.029 9.9E-07 43.3 12.6 100 95-203 11-110 (166)
45 3q49_B STIP1 homology and U bo 96.8 0.021 7.3E-07 43.1 11.4 97 97-202 9-105 (137)
46 2fbn_A 70 kDa peptidylprolyl i 96.7 0.028 9.5E-07 46.0 12.8 100 97-202 38-150 (198)
47 2vyi_A SGTA protein; chaperone 96.7 0.04 1.4E-06 40.2 12.6 100 94-202 9-108 (131)
48 3u3w_A Transcriptional activat 96.7 0.011 3.8E-07 51.7 10.9 105 99-203 117-225 (293)
49 3vtx_A MAMA; tetratricopeptide 96.7 0.023 8E-07 45.4 12.0 96 98-202 6-101 (184)
50 2kck_A TPR repeat; tetratricop 96.7 0.011 3.8E-07 42.3 8.9 100 99-205 8-108 (112)
51 1hz4_A MALT regulatory protein 96.5 0.074 2.5E-06 47.4 15.3 127 77-203 113-244 (373)
52 2fo7_A Synthetic consensus TPR 96.5 0.05 1.7E-06 39.6 11.9 96 98-202 2-97 (136)
53 1hh8_A P67PHOX, NCF-2, neutrop 96.5 0.037 1.3E-06 45.0 12.3 104 98-204 38-151 (213)
54 1hz4_A MALT regulatory protein 96.5 0.095 3.3E-06 46.7 15.8 127 75-202 71-202 (373)
55 1na0_A Designed protein CTPR3; 96.5 0.067 2.3E-06 38.6 12.2 97 97-202 9-105 (125)
56 3qky_A Outer membrane assembly 96.4 0.036 1.2E-06 47.2 11.9 106 97-205 15-128 (261)
57 3u4t_A TPR repeat-containing p 96.4 0.063 2.2E-06 45.1 12.9 97 97-202 74-170 (272)
58 2ho1_A Type 4 fimbrial biogene 96.3 0.24 8.3E-06 41.0 16.5 97 98-201 106-202 (252)
59 4ga2_A E3 SUMO-protein ligase 96.3 0.029 1E-06 44.4 10.1 96 95-199 29-124 (150)
60 3uq3_A Heat shock protein STI1 96.3 0.17 5.8E-06 41.5 15.0 101 94-203 136-236 (258)
61 2ho1_A Type 4 fimbrial biogene 96.2 0.18 6.3E-06 41.7 15.2 100 97-203 71-170 (252)
62 3u4t_A TPR repeat-containing p 96.2 0.039 1.3E-06 46.4 10.9 112 98-222 38-149 (272)
63 3ieg_A DNAJ homolog subfamily 96.2 0.2 6.7E-06 43.2 15.7 96 98-202 4-99 (359)
64 3qky_A Outer membrane assembly 96.2 0.037 1.3E-06 47.1 10.8 109 97-205 52-179 (261)
65 3gyz_A Chaperone protein IPGC; 96.2 0.12 4.2E-06 41.6 13.3 121 73-202 4-132 (151)
66 2vq2_A PILW, putative fimbrial 96.1 0.069 2.4E-06 43.0 11.6 99 97-202 76-175 (225)
67 3hym_B Cell division cycle pro 96.1 0.084 2.9E-06 45.2 12.8 102 98-202 160-264 (330)
68 1p5q_A FKBP52, FK506-binding p 96.1 0.11 3.7E-06 46.9 13.8 101 96-202 146-258 (336)
69 2vgx_A Chaperone SYCD; alterna 96.1 0.085 2.9E-06 41.7 11.6 98 96-202 20-117 (148)
70 4eqf_A PEX5-related protein; a 96.1 0.063 2.1E-06 47.5 11.9 133 97-238 213-351 (365)
71 3as5_A MAMA; tetratricopeptide 96.0 0.1 3.4E-06 40.4 11.6 60 100-162 45-104 (186)
72 2vq2_A PILW, putative fimbrial 96.0 0.092 3.1E-06 42.2 11.7 100 98-204 43-143 (225)
73 2fo7_A Synthetic consensus TPR 96.0 0.11 3.6E-06 37.8 11.0 95 98-201 36-130 (136)
74 2e2e_A Formate-dependent nitri 95.9 0.079 2.7E-06 42.1 10.9 98 98-204 45-145 (177)
75 2xcb_A PCRH, regulatory protei 95.9 0.12 4E-06 40.0 11.6 97 97-202 18-114 (142)
76 2xpi_A Anaphase-promoting comp 95.9 0.23 8E-06 46.8 15.7 95 98-201 408-502 (597)
77 1xnf_A Lipoprotein NLPI; TPR, 95.9 0.23 7.7E-06 41.4 14.1 95 98-202 78-172 (275)
78 4i17_A Hypothetical protein; T 95.9 0.16 5.6E-06 41.8 13.0 100 98-202 43-145 (228)
79 1kt0_A FKBP51, 51 kDa FK506-bi 95.8 0.081 2.8E-06 50.1 12.2 101 96-202 267-379 (457)
80 3ma5_A Tetratricopeptide repea 95.8 0.086 2.9E-06 38.6 9.8 73 98-173 8-80 (100)
81 3as5_A MAMA; tetratricopeptide 95.8 0.16 5.5E-06 39.2 12.0 96 97-201 76-171 (186)
82 1a17_A Serine/threonine protei 95.8 0.14 4.8E-06 39.3 11.4 99 97-202 47-145 (166)
83 2hr2_A Hypothetical protein; a 95.7 0.22 7.4E-06 41.3 13.0 106 97-202 11-130 (159)
84 1ihg_A Cyclophilin 40; ppiase 95.7 0.097 3.3E-06 48.3 11.7 100 97-202 223-335 (370)
85 4i17_A Hypothetical protein; T 95.6 0.14 4.8E-06 42.3 11.6 99 98-204 8-106 (228)
86 3cv0_A Peroxisome targeting si 95.6 0.16 5.6E-06 43.3 12.3 97 97-202 172-268 (327)
87 3n71_A Histone lysine methyltr 95.6 0.21 7.2E-06 48.4 14.1 121 80-200 332-461 (490)
88 3mkr_A Coatomer subunit epsilo 95.5 0.96 3.3E-05 39.7 17.5 97 98-202 131-228 (291)
89 2q7f_A YRRB protein; TPR, prot 95.5 0.11 3.7E-06 42.6 10.5 98 97-203 91-188 (243)
90 2yhc_A BAMD, UPF0169 lipoprote 95.5 0.66 2.3E-05 38.6 15.5 105 98-205 5-127 (225)
91 4b4t_Q 26S proteasome regulato 95.5 0.13 4.4E-06 46.6 11.8 103 99-203 57-164 (434)
92 3vtx_A MAMA; tetratricopeptide 95.4 0.32 1.1E-05 38.5 12.7 97 97-202 39-135 (184)
93 2y4t_A DNAJ homolog subfamily 95.4 0.19 6.6E-06 45.4 12.7 102 99-202 213-323 (450)
94 1hh8_A P67PHOX, NCF-2, neutrop 95.4 0.25 8.5E-06 39.9 12.1 94 99-204 8-101 (213)
95 2q7f_A YRRB protein; TPR, prot 95.4 0.22 7.7E-06 40.6 11.9 98 97-203 57-154 (243)
96 3ieg_A DNAJ homolog subfamily 95.3 0.29 1E-05 42.1 13.0 102 98-202 155-262 (359)
97 1fch_A Peroxisomal targeting s 95.2 0.26 9E-06 43.1 12.4 97 97-202 217-313 (368)
98 2xev_A YBGF; tetratricopeptide 95.1 0.16 5.6E-06 37.5 9.4 67 97-163 39-105 (129)
99 3hym_B Cell division cycle pro 95.1 0.31 1.1E-05 41.6 12.3 100 97-202 193-298 (330)
100 2yhc_A BAMD, UPF0169 lipoprote 95.1 0.53 1.8E-05 39.2 13.5 107 96-205 40-178 (225)
101 2c2l_A CHIP, carboxy terminus 95.0 0.17 5.8E-06 44.3 10.7 96 98-202 5-100 (281)
102 2gw1_A Mitochondrial precursor 95.0 0.27 9.3E-06 45.0 12.4 98 94-201 3-100 (514)
103 3cv0_A Peroxisome targeting si 94.9 0.6 2E-05 39.7 13.8 89 106-203 147-235 (327)
104 1hxi_A PEX5, peroxisome target 94.9 0.35 1.2E-05 36.6 10.9 94 100-202 20-113 (121)
105 1fch_A Peroxisomal targeting s 94.8 0.18 6.2E-06 44.1 10.3 105 97-204 251-360 (368)
106 4ga2_A E3 SUMO-protein ligase 94.7 0.087 3E-06 41.6 7.3 106 102-223 2-107 (150)
107 3k9i_A BH0479 protein; putativ 94.7 0.1 3.6E-06 38.9 7.3 66 94-162 24-89 (117)
108 2xpi_A Anaphase-promoting comp 94.7 0.35 1.2E-05 45.5 12.6 103 97-202 441-544 (597)
109 2y4t_A DNAJ homolog subfamily 94.7 0.33 1.1E-05 43.8 11.9 97 97-202 26-122 (450)
110 2kat_A Uncharacterized protein 94.6 0.33 1.1E-05 35.6 9.9 70 97-169 19-88 (115)
111 1na3_A Designed protein CTPR2; 94.6 0.26 9E-06 33.9 8.8 64 97-163 9-72 (91)
112 2if4_A ATFKBP42; FKBP-like, al 94.6 0.12 4.3E-06 46.6 8.8 99 98-202 180-292 (338)
113 2pl2_A Hypothetical conserved 94.5 0.6 2.1E-05 38.7 12.4 96 98-202 6-112 (217)
114 2pl2_A Hypothetical conserved 94.3 0.2 6.8E-06 41.8 9.0 94 97-200 118-211 (217)
115 3urz_A Uncharacterized protein 94.3 1.1 3.9E-05 36.7 13.5 95 99-202 6-116 (208)
116 4eqf_A PEX5-related protein; a 94.2 0.46 1.6E-05 41.8 11.5 95 99-202 67-161 (365)
117 4b4t_S RPN3, 26S proteasome re 94.2 0.23 7.9E-06 48.7 10.1 138 135-278 232-371 (523)
118 4f3v_A ESX-1 secretion system 94.2 0.49 1.7E-05 42.7 11.7 151 97-264 102-252 (282)
119 3urz_A Uncharacterized protein 94.1 0.54 1.9E-05 38.7 11.2 60 101-163 58-117 (208)
120 1xnf_A Lipoprotein NLPI; TPR, 94.1 0.49 1.7E-05 39.3 11.0 95 97-202 111-205 (275)
121 2v5f_A Prolyl 4-hydroxylase su 94.1 0.53 1.8E-05 34.9 10.0 82 100-183 8-93 (104)
122 2kck_A TPR repeat; tetratricop 94.0 0.19 6.4E-06 35.6 7.1 65 98-163 41-106 (112)
123 3fp2_A TPR repeat-containing p 93.9 0.29 9.8E-06 45.3 9.9 95 94-197 22-116 (537)
124 2gw1_A Mitochondrial precursor 93.8 0.38 1.3E-05 43.9 10.6 101 99-202 340-443 (514)
125 3k9i_A BH0479 protein; putativ 93.8 0.45 1.5E-05 35.2 9.2 90 109-204 2-91 (117)
126 1elr_A TPR2A-domain of HOP; HO 93.8 0.21 7.3E-06 36.2 7.2 66 98-163 39-108 (131)
127 4gyw_A UDP-N-acetylglucosamine 93.7 0.64 2.2E-05 47.1 12.7 97 97-202 43-139 (723)
128 1w3b_A UDP-N-acetylglucosamine 93.5 0.69 2.3E-05 41.1 11.5 96 97-201 67-162 (388)
129 3fp2_A TPR repeat-containing p 93.5 0.69 2.3E-05 42.7 11.8 62 99-163 312-373 (537)
130 1ouv_A Conserved hypothetical 93.5 0.74 2.5E-05 38.9 11.2 93 97-202 38-142 (273)
131 2vyi_A SGTA protein; chaperone 93.4 0.54 1.8E-05 33.9 8.8 64 97-163 46-109 (131)
132 4abn_A Tetratricopeptide repea 93.3 0.83 2.8E-05 43.1 12.2 97 96-202 101-207 (474)
133 1w3b_A UDP-N-acetylglucosamine 92.9 1.8 6.2E-05 38.3 13.3 95 99-202 239-333 (388)
134 2dba_A Smooth muscle cell asso 92.8 0.84 2.9E-05 34.0 9.4 65 96-163 64-128 (148)
135 3upv_A Heat shock protein STI1 92.7 0.7 2.4E-05 34.2 8.8 64 98-164 39-102 (126)
136 3qww_A SET and MYND domain-con 92.7 1.7 5.8E-05 41.2 13.4 89 78-166 319-414 (433)
137 1na0_A Designed protein CTPR3; 92.7 0.79 2.7E-05 32.6 8.8 63 98-163 44-106 (125)
138 2vsy_A XCC0866; transferase, g 92.7 0.93 3.2E-05 43.3 11.7 98 97-203 57-157 (568)
139 4abn_A Tetratricopeptide repea 92.6 0.56 1.9E-05 44.3 9.9 96 97-202 137-249 (474)
140 1wao_1 Serine/threonine protei 92.5 0.18 6E-06 48.2 6.2 98 97-201 40-137 (477)
141 3sz7_A HSC70 cochaperone (SGT) 92.5 1.6 5.5E-05 33.9 11.0 65 97-164 45-109 (164)
142 2xcb_A PCRH, regulatory protei 92.2 1.6 5.5E-05 33.3 10.5 66 97-165 52-117 (142)
143 2ond_A Cleavage stimulation fa 92.1 1 3.5E-05 39.3 10.3 97 98-204 100-199 (308)
144 4gyw_A UDP-N-acetylglucosamine 92.0 1.4 4.9E-05 44.5 12.6 142 48-201 30-172 (723)
145 4gco_A Protein STI-1; structur 91.9 0.97 3.3E-05 34.4 8.8 64 97-163 47-110 (126)
146 3mkr_A Coatomer subunit epsilo 91.9 0.9 3.1E-05 39.9 9.7 155 98-278 102-268 (291)
147 1elw_A TPR1-domain of HOP; HOP 91.8 1 3.4E-05 31.8 8.4 64 97-163 38-101 (118)
148 2ond_A Cleavage stimulation fa 91.3 0.66 2.2E-05 40.6 8.2 102 99-205 170-272 (308)
149 3mv2_B Coatomer subunit epsilo 91.3 1.3 4.6E-05 40.4 10.4 105 99-205 102-209 (310)
150 3q49_B STIP1 homology and U bo 91.2 1 3.4E-05 33.4 8.2 66 97-165 43-108 (137)
151 1ouv_A Conserved hypothetical 91.2 2.1 7.3E-05 35.9 11.1 94 96-202 73-178 (273)
152 3qou_A Protein YBBN; thioredox 91.1 1.6 5.5E-05 37.9 10.5 103 98-203 118-248 (287)
153 2lni_A Stress-induced-phosphop 91.0 0.82 2.8E-05 33.2 7.3 63 98-163 51-113 (133)
154 2vgx_A Chaperone SYCD; alterna 90.8 2.5 8.7E-05 32.8 10.6 66 97-165 55-120 (148)
155 2vsy_A XCC0866; transferase, g 90.7 1.9 6.3E-05 41.1 11.4 62 97-161 91-155 (568)
156 3gyz_A Chaperone protein IPGC; 90.7 1.6 5.6E-05 34.7 9.4 65 97-164 70-134 (151)
157 3rkv_A Putative peptidylprolyl 90.6 4 0.00014 31.5 11.5 65 97-164 63-127 (162)
158 1p5q_A FKBP52, FK506-binding p 90.5 2.9 9.9E-05 37.3 11.9 91 97-196 196-286 (336)
159 1ihg_A Cyclophilin 40; ppiase 90.3 6.8 0.00023 35.7 14.4 97 93-198 269-365 (370)
160 4gcn_A Protein STI-1; structur 89.8 1.2 4E-05 33.8 7.5 77 97-176 42-122 (127)
161 2pzi_A Probable serine/threoni 89.7 2.1 7.2E-05 42.4 11.2 95 98-202 468-562 (681)
162 4f3v_A ESX-1 secretion system 89.6 3.5 0.00012 37.0 11.6 99 99-202 137-236 (282)
163 1hxi_A PEX5, peroxisome target 89.2 1.2 4.2E-05 33.5 7.1 63 97-162 51-113 (121)
164 2kc7_A BFR218_protein; tetratr 88.9 2.4 8.2E-05 29.7 8.2 61 100-163 3-64 (99)
165 3u64_A Protein TP_0956; tetrat 88.4 1.5 5E-05 40.0 8.1 72 99-172 201-279 (301)
166 3n71_A Histone lysine methyltr 88.4 5 0.00017 38.6 12.4 102 102-203 314-422 (490)
167 2r5s_A Uncharacterized protein 88.1 3.3 0.00011 32.6 9.4 98 97-203 40-137 (176)
168 4g1t_A Interferon-induced prot 88.0 0.89 3E-05 41.4 6.6 103 99-201 336-457 (472)
169 1wao_1 Serine/threonine protei 87.9 2.4 8.2E-05 40.1 9.8 97 97-202 6-102 (477)
170 2fbn_A 70 kDa peptidylprolyl i 87.7 2.6 9E-05 33.8 8.7 64 97-163 88-151 (198)
171 1kt0_A FKBP51, 51 kDa FK506-bi 87.7 4.1 0.00014 38.1 11.2 95 96-199 316-410 (457)
172 3mkq_A Coatomer beta'-subunit; 87.7 2.6 9E-05 41.3 10.2 101 75-201 663-763 (814)
173 3rjv_A Putative SEL1 repeat pr 86.7 3.2 0.00011 34.1 8.8 92 97-202 18-117 (212)
174 1xi4_A Clathrin heavy chain; a 86.2 14 0.00048 40.8 15.2 69 78-162 1181-1249(1630)
175 2ooe_A Cleavage stimulation fa 85.4 2.1 7.2E-05 40.3 7.8 52 109-163 403-454 (530)
176 1xi4_A Clathrin heavy chain; a 84.6 5.2 0.00018 44.0 11.0 97 95-200 1103-1221(1630)
177 4g26_A Pentatricopeptide repea 83.8 13 0.00045 35.5 12.7 165 101-277 30-204 (501)
178 3mv2_B Coatomer subunit epsilo 83.8 25 0.00085 31.8 17.2 176 32-218 72-258 (310)
179 2ooe_A Cleavage stimulation fa 83.4 4.7 0.00016 37.8 9.3 98 97-204 321-421 (530)
180 2l6j_A TPR repeat-containing p 83.1 3.6 0.00012 28.8 6.6 33 98-130 39-71 (111)
181 3qww_A SET and MYND domain-con 83.0 8 0.00027 36.5 10.7 94 109-202 310-410 (433)
182 3qwp_A SET and MYND domain-con 82.7 16 0.00054 34.3 12.6 98 105-202 295-399 (429)
183 2h6f_A Protein farnesyltransfe 82.7 20 0.00067 32.9 13.0 95 98-201 132-227 (382)
184 2oo2_A Hypothetical protein AF 82.2 1.9 6.4E-05 32.1 4.7 56 67-124 5-62 (86)
185 3rjv_A Putative SEL1 repeat pr 81.9 3.1 0.00011 34.2 6.6 93 97-202 50-157 (212)
186 3qwp_A SET and MYND domain-con 81.5 8.5 0.00029 36.1 10.2 79 88-166 318-403 (429)
187 2e2e_A Formate-dependent nitri 80.6 6.4 0.00022 30.5 7.8 65 97-164 78-145 (177)
188 2pmr_A Uncharacterized protein 80.4 4 0.00014 30.4 6.0 68 69-147 5-78 (87)
189 2c2l_A CHIP, carboxy terminus 80.3 8 0.00027 33.3 9.0 62 99-163 40-101 (281)
190 2h6f_A Protein farnesyltransfe 79.8 10 0.00036 34.8 10.1 98 95-201 95-193 (382)
191 2pzi_A Probable serine/threoni 79.1 7.7 0.00026 38.3 9.5 59 136-200 435-493 (681)
192 3ax2_A Mitochondrial import re 79.1 6.3 0.00022 28.3 6.5 45 94-138 14-58 (73)
193 3t5x_A PCI domain-containing p 78.7 6.1 0.00021 33.5 7.5 97 173-278 13-109 (203)
194 2r5s_A Uncharacterized protein 78.2 6.6 0.00023 30.8 7.2 63 97-160 108-170 (176)
195 1pc2_A Mitochondria fission pr 77.9 18 0.00061 29.4 9.8 40 94-133 68-107 (152)
196 2if4_A ATFKBP42; FKBP-like, al 75.1 5.5 0.00019 35.6 6.5 63 98-163 231-293 (338)
197 2xm6_A Protein corresponding t 74.9 21 0.0007 32.9 10.7 58 98-160 76-141 (490)
198 1pc2_A Mitochondria fission pr 74.0 16 0.00056 29.7 8.5 78 114-196 15-93 (152)
199 3t5v_B Nuclear mRNA export pro 73.2 47 0.0016 31.7 12.8 159 112-278 141-325 (455)
200 2xm6_A Protein corresponding t 72.6 25 0.00087 32.3 10.7 58 98-160 112-177 (490)
201 2hr2_A Hypothetical protein; a 72.5 20 0.00067 29.3 8.7 66 99-164 59-132 (159)
202 1na3_A Designed protein CTPR2; 71.1 12 0.00043 24.9 6.3 31 98-128 44-74 (91)
203 1deq_A Fibrinogen (alpha chain 70.7 31 0.0011 32.3 10.4 168 66-251 58-230 (390)
204 1b89_A Protein (clathrin heavy 70.1 13 0.00044 35.6 8.0 47 100-154 151-197 (449)
205 2kc7_A BFR218_protein; tetratr 68.8 6 0.0002 27.5 4.3 33 99-131 37-69 (99)
206 2v5f_A Prolyl 4-hydroxylase su 68.4 30 0.001 24.9 8.3 67 135-201 6-73 (104)
207 1nzn_A CGI-135 protein, fissio 68.2 36 0.0012 26.7 9.1 82 111-197 15-97 (126)
208 1om2_A Protein (mitochondrial 67.8 11 0.00037 28.5 5.6 39 99-137 22-60 (95)
209 3ma5_A Tetratricopeptide repea 67.7 3.7 0.00013 29.4 2.9 30 98-127 42-71 (100)
210 1klx_A Cysteine rich protein B 66.7 22 0.00074 27.1 7.5 61 97-162 57-125 (138)
211 3bee_A Putative YFRE protein; 63.8 14 0.00049 26.7 5.6 33 97-129 43-75 (93)
212 4e6h_A MRNA 3'-END-processing 63.5 23 0.00078 35.5 8.7 65 100-164 507-571 (679)
213 1nzn_A CGI-135 protein, fissio 63.3 14 0.00047 29.2 5.7 44 93-136 70-113 (126)
214 1b89_A Protein (clathrin heavy 62.7 10 0.00035 36.3 5.7 94 98-202 123-235 (449)
215 3mkq_B Coatomer subunit alpha; 62.2 43 0.0015 27.8 8.9 81 98-200 35-115 (177)
216 4g26_A Pentatricopeptide repea 61.4 78 0.0027 30.0 11.8 92 99-199 107-200 (501)
217 3e4b_A ALGK; tetratricopeptide 61.0 22 0.00076 32.8 7.7 88 99-200 178-277 (452)
218 2kat_A Uncharacterized protein 60.2 42 0.0014 23.7 8.8 79 115-202 3-81 (115)
219 3ffl_A Anaphase-promoting comp 58.8 34 0.0012 28.3 7.5 68 134-201 20-90 (167)
220 2nsz_A Programmed cell death p 58.7 62 0.0021 25.1 9.3 50 95-148 5-54 (129)
221 3t5x_A PCI domain-containing p 57.5 36 0.0012 28.6 7.7 62 90-151 7-70 (203)
222 1klx_A Cysteine rich protein B 55.5 64 0.0022 24.3 8.7 86 103-201 31-124 (138)
223 3ghg_A Fibrinogen alpha chain; 55.2 37 0.0013 33.1 8.0 113 51-165 25-155 (562)
224 3pv8_A DNA polymerase I; DNA p 54.1 25 0.00087 34.7 7.0 56 32-87 172-237 (592)
225 3o48_A Mitochondria fission 1 49.9 84 0.0029 25.0 8.2 57 75-136 61-117 (134)
226 3qou_A Protein YBBN; thioredox 48.8 58 0.002 27.7 7.9 28 99-126 221-248 (287)
227 2rg8_A Programmed cell death p 48.0 49 0.0017 26.9 6.8 55 91-149 4-58 (165)
228 2ion_A PDCD4, programmed cell 46.5 1.1E+02 0.0038 24.4 9.0 51 94-148 6-56 (152)
229 1zu2_A Mitochondrial import re 45.1 76 0.0026 25.7 7.5 63 98-160 37-110 (158)
230 1m1j_A Fibrinogen alpha subuni 45.1 1.3E+02 0.0046 28.7 10.0 99 66-166 56-157 (491)
231 2k7r_A Primosomal protein DNAI 43.0 14 0.00047 28.0 2.5 21 230-250 22-42 (106)
232 3ly7_A Transcriptional activat 39.6 1.9E+02 0.0064 26.8 10.2 62 98-163 278-339 (372)
233 1iqp_A RFCS; clamp loader, ext 37.9 1.7E+02 0.0058 24.8 9.2 59 110-168 248-308 (327)
234 2chq_A Replication factor C sm 37.7 1.8E+02 0.0063 24.5 11.4 59 110-168 240-300 (319)
235 2crb_A Nuclear receptor bindin 36.9 32 0.0011 25.9 3.5 27 100-126 18-44 (97)
236 4dfk_A DNA polymerase I, therm 36.8 31 0.0011 33.7 4.5 54 34-87 121-185 (540)
237 1vmg_A Hypothetical protein SS 35.8 1.1E+02 0.0036 22.7 6.4 69 50-118 20-90 (95)
238 1y8m_A FIS1; mitochondria, unk 35.5 1.1E+02 0.0039 24.5 6.9 58 74-136 59-116 (144)
239 1ug3_A EIF4GI, eukaryotic prot 35.4 1.3E+02 0.0044 27.0 8.3 56 90-149 4-59 (339)
240 4h7y_A Dual specificity protei 35.2 55 0.0019 26.9 5.0 48 97-144 94-141 (161)
241 4b4t_P 26S proteasome regulato 34.7 2.8E+02 0.0096 25.7 12.7 83 90-172 170-256 (445)
242 1zu2_A Mitochondrial import re 33.9 23 0.00078 28.9 2.6 34 96-129 79-123 (158)
243 1sxj_D Activator 1 41 kDa subu 33.7 2.1E+02 0.0073 24.6 9.3 33 110-142 277-309 (353)
244 2wpv_A GET4, UPF0363 protein Y 33.0 2.7E+02 0.0092 24.9 12.2 127 69-200 9-160 (312)
245 1vh6_A Flagellar protein FLIS; 32.6 75 0.0026 25.4 5.5 51 115-165 7-64 (145)
246 2q5z_A MAZG, hypothetical prot 32.1 1.2E+02 0.0041 22.9 6.4 55 65-119 39-103 (114)
247 2bn5_A PSI; nuclear protein, s 31.5 27 0.00092 21.1 1.9 20 103-122 8-27 (33)
248 2cpt_A SKD1 protein, vacuolar 31.4 79 0.0027 24.3 5.2 25 104-128 25-49 (117)
249 3e4b_A ALGK; tetratricopeptide 31.1 1.9E+02 0.0066 26.3 8.9 87 101-201 217-314 (452)
250 1v54_E Cytochrome C oxidase po 30.6 99 0.0034 23.7 5.5 50 93-142 26-90 (109)
251 2kfn_A Klenow fragment of DNA 29.8 56 0.0019 32.0 5.1 53 35-87 187-250 (605)
252 2wpv_A GET4, UPF0363 protein Y 28.6 3.2E+02 0.011 24.4 9.8 86 49-141 78-176 (312)
253 3lpz_A GET4 (YOR164C homolog); 28.5 3.4E+02 0.012 24.7 13.1 122 72-199 11-161 (336)
254 1zbp_A Hypothetical protein VP 28.4 2E+02 0.0067 25.6 7.9 105 74-200 14-126 (273)
255 1y8m_A FIS1; mitochondria, unk 27.0 2.4E+02 0.0083 22.5 8.3 72 127-204 36-110 (144)
256 4b0z_A RPN12, 26S proteasome r 26.8 2.9E+02 0.0098 23.3 14.3 84 109-192 19-115 (229)
257 1uw4_B UPF2, regulator of nons 26.4 2.8E+02 0.0097 24.1 8.6 133 128-279 73-241 (248)
258 1uuj_A Platelet-activating fac 26.1 2E+02 0.0067 21.2 7.2 64 28-91 8-81 (88)
259 2ff4_A Probable regulatory pro 24.6 1.9E+02 0.0065 26.2 7.5 64 62-125 155-233 (388)
260 4e6h_A MRNA 3'-END-processing 24.5 1.5E+02 0.0051 29.5 7.2 62 99-163 345-407 (679)
261 3ly7_A Transcriptional activat 24.2 98 0.0034 28.7 5.4 57 98-159 311-367 (372)
262 3t5v_B Nuclear mRNA export pro 24.1 78 0.0027 30.1 4.8 58 93-150 216-281 (455)
263 2q73_A MAZG, hypothetical prot 22.7 2.2E+02 0.0075 20.7 6.2 52 68-119 22-83 (100)
264 2yf0_A Myotubularin-related pr 22.2 84 0.0029 30.5 4.6 129 110-268 271-438 (512)
265 2y69_E Cytochrome C oxidase su 21.9 2.5E+02 0.0084 22.7 6.6 67 76-142 50-133 (152)
266 1x9m_A DNA polymerase; DNA plo 21.7 83 0.0029 31.4 4.7 31 57-87 224-254 (698)
267 3mkq_A Coatomer beta'-subunit; 21.4 1.5E+02 0.005 28.6 6.3 18 106-123 745-762 (814)
268 3txn_A 26S proteasome regulato 20.6 5E+02 0.017 23.9 14.8 95 93-189 135-235 (394)
269 1n1f_A Interleukin-19; cytokin 20.3 3.4E+02 0.012 21.9 8.3 72 61-144 78-152 (159)
270 2lnm_A Protein TIC 40, chlorop 20.2 99 0.0034 20.8 3.5 28 231-259 3-30 (62)
No 1
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-56 Score=433.69 Aligned_cols=275 Identities=35% Similarity=0.617 Sum_probs=237.9
Q ss_pred CCCCCCCcchHHhhHhHhhcCCCCcchhhHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--------------------CC
Q 023407 2 DSEGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVL--------------------EM 61 (282)
Q Consensus 2 ~~~~~~~p~~~l~~l~f~~~~~~~~~~~~~~a~~~ll~~ik~~~m~~~Y~~l~~~~~~--------------------~~ 61 (282)
++.+.++||++|+++.|+++++...+..+.++++.+++.||+++|+|+|+.+|+++++ |+
T Consensus 15 d~~~~k~P~~~la~~~f~l~~~~~~~~~~~~~~~~l~~~ik~~~ma~~y~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 94 (429)
T 4b4t_R 15 DPTVNRVPNYEVSEKAFLLTQSKVSIEQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKF 94 (429)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHSCCCCSCCSSCSHHHHHHHHHTTTT
T ss_pred CcccccCCChHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccchhhhhhhhhhhhhhcchH
Confidence 5667899999999999999998766667889999999999999999999999999753 78
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHH
Q 023407 62 DQSVLDSMRTKIEDELKKLDDRIADAEE-NLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYT 140 (282)
Q Consensus 62 D~~~~~~~~~~n~~~l~~Le~~lk~~~~-nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~ 140 (282)
|+.|++.+.++|++++++|++.++++++ |.|+.++|+++.++|+||+++||+++|+++|.+++++|++++|++||+|.+
T Consensus 95 d~~~~~~~~~~n~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~ 174 (429)
T 4b4t_R 95 DQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTI 174 (429)
T ss_dssp CCSSCTTTTCCSSCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9999999999999999999999999976 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHH
Q 023407 141 LQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTV 220 (282)
Q Consensus 141 irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~ 220 (282)
||++++.+||.+++.++.||+.++++||||+++||+++|.|+++|..|+|++||+.|+++++||++.|++++.++++|++
T Consensus 175 irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~ 254 (429)
T 4b4t_R 175 ARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATYAS 254 (429)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCChHHHHHHccCChhHHHhhcCCchHH---HHHHHHhcCChhHHHHHHHHhhh
Q 023407 221 LTSIISLDRVSLKQKVVDAPEILTVIGKIPYLS---EFLNSLYDCQYKSFFSAFGEKRS 276 (282)
Q Consensus 221 l~aLasl~R~eLk~kvl~~~e~~~~l~~~P~l~---~ll~sfy~~~Y~~~~~~L~~~~~ 276 (282)
||++++++|++++.+|++||+|+.+++..|.++ +++.+||+|+|..||+.+.+..+
T Consensus 255 l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 313 (429)
T 4b4t_R 255 VTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYA 313 (429)
T ss_dssp HHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999999999998765 56899999999999998765544
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.87 E-value=1.1e-21 Score=187.53 Aligned_cols=175 Identities=13% Similarity=0.101 Sum_probs=158.7
Q ss_pred hhhhHHHHhCCHHHHHHHHHHhhccccC---chhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhC-CCcchhhHHH
Q 023407 102 AKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG-GDWERKNRLK 177 (282)
Q Consensus 102 ~la~~~~~iGd~~~A~k~y~~~~e~~~s---~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~g-gdw~rrnrLk 177 (282)
.+|++|+..|++++|++.+.+++++|.. ..+.+++++..+++....+|+..++..+++|.+..... ++|...++++
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 7899999999999999999999999988 78999999999999999999999999999999999876 8999999999
Q ss_pred HHHHHHHh-hcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhccCChHHHHHHccCChhHHHhhcCCch---HH
Q 023407 178 VYEGLYCM-STRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPY---LS 253 (282)
Q Consensus 178 vy~gL~~l-~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLasl~R~eLk~kvl~~~e~~~~l~~~P~---l~ 253 (282)
++.|+++| ..|+|++|+..|+++..+|+..+...+.+++.|++||+|++++|.|++. ++.++.+..+ ..|+ ++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~-~l~~~~~~~~--~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQ-LVSGKLAITY--SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHH-HHHSHHHHTT--CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHH-Hhcccccccc--CCccHHHHH
Confidence 99999999 8999999999999999889877666778999999999999999999985 5666655554 4455 67
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhhhh
Q 023407 254 EFLNSLYDCQYKSFFSAFGEKRSDAC 279 (282)
Q Consensus 254 ~ll~sfy~~~Y~~~~~~L~~~~~~~~ 279 (282)
+++.+|++++|..|+..|...++.+.
T Consensus 261 ~L~~a~~~~dl~~f~~iL~~~~~~l~ 286 (394)
T 3txn_A 261 SVAEASHKRSLADFQAALKEYKKELA 286 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSTTTTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 78999999999999999999877654
No 3
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.06 E-value=3.5e-10 Score=109.25 Aligned_cols=179 Identities=10% Similarity=0.025 Sum_probs=134.7
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccc---cCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHH-HHhhCCCcc
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKT---VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS-LFEEGGDWE 171 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~---~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~-~~e~ggdw~ 171 (282)
-.+....||..|.+.||+.+|.+......--| .....++++++..+|+++..+||..+...+.|+.. .....++|+
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 33456789999999999999999998866444 34477899999999999999999999999999975 444567889
Q ss_pred hhhHHHHHHHHHHhhcccHHHHHHHhhcccccccccccc-CchhHHHHHHHHHhcc---CChHHHHHHccCChhHHHhhc
Q 023407 172 RKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELF-PYDTFIFYTVLTSIIS---LDRVSLKQKVVDAPEILTVIG 247 (282)
Q Consensus 172 rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~eli-s~~d~a~Y~~l~aLas---l~R~eLk~kvl~~~e~~~~l~ 247 (282)
.+.+++.+.|..++..|+|.+|++.|.++..+++..+-- .....-.|.++|.+.+ -.|+++-.++.. ...++
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~----~~~~~ 291 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQN----DNNLK 291 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHH----HSSCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhh----ccccc
Confidence 999999999999999999999999999998777532211 1122333444444443 335555444433 33345
Q ss_pred CCchHHHHHHHHhcCChhHHHHHHHHhhhhh
Q 023407 248 KIPYLSEFLNSLYDCQYKSFFSAFGEKRSDA 278 (282)
Q Consensus 248 ~~P~l~~ll~sfy~~~Y~~~~~~L~~~~~~~ 278 (282)
..|.++.++.+|.+.....|-..+...++.+
T Consensus 292 ~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 292 KLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred ccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 5799999999999998888777776655443
No 4
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.86 E-value=5.8e-08 Score=89.40 Aligned_cols=197 Identities=11% Similarity=0.086 Sum_probs=152.1
Q ss_pred HHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccC---chhHHHHHHHHHHHHHHccChHHHHHHH
Q 023407 81 DDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSI 157 (282)
Q Consensus 81 e~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s---~~~~id~~l~~irv~~~~~d~~~v~~~i 157 (282)
+.-+.-++++.........+..+|..|...|++++|++.+.++...|.. ....++..+..+|+....||+.....+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 198 (434)
T 4b4t_Q 119 EKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASL 198 (434)
T ss_dssp HHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 3333444444444445667889999999999999999999998776654 3467889999999999999999999999
Q ss_pred HHHHHHHhhCC-CcchhhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCc----hhHHHHHHHHHhccCChHHH
Q 023407 158 DKAKSLFEEGG-DWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPY----DTFIFYTVLTSIISLDRVSL 232 (282)
Q Consensus 158 ~kA~~~~e~gg-dw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~----~d~a~Y~~l~aLasl~R~eL 232 (282)
.+|.......+ ++....++....|...+..|+|++|...|.+++.++...+.... .....|.++|.+.+..+.+.
T Consensus 199 ~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (434)
T 4b4t_Q 199 TAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDV 278 (434)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHH
Confidence 99998876544 44567888999999999999999999999999888764444333 34667888888888777766
Q ss_pred HHHccCChhHHHh--hcCCchHHHHHHHHhcCChhHHHHHHHHhhhhh
Q 023407 233 KQKVVDAPEILTV--IGKIPYLSEFLNSLYDCQYKSFFSAFGEKRSDA 278 (282)
Q Consensus 233 k~kvl~~~e~~~~--l~~~P~l~~ll~sfy~~~Y~~~~~~L~~~~~~~ 278 (282)
. .++.+.+.... .+..|.+..++.+|.++.+..|...+....+.+
T Consensus 279 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 325 (434)
T 4b4t_Q 279 K-NILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKEL 325 (434)
T ss_dssp H-HHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred H-hHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4 44555444443 233578999999999999999999888766544
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.64 E-value=2e-07 Score=88.57 Aligned_cols=166 Identities=12% Similarity=0.109 Sum_probs=128.3
Q ss_pred HHHhCCHHHHHHHHHHhhcccc--------------CchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcch
Q 023407 107 YIQIGDKEKALEQLKVTESKTV--------------AVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER 172 (282)
Q Consensus 107 ~~~iGd~~~A~k~y~~~~e~~~--------------s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~r 172 (282)
..+..|.++|++...+...+.. .....+.+.+.+.|+.+..+|...+++++++++..++.++||+.
T Consensus 86 ~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~ 165 (393)
T 4b4t_O 86 LKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPL 165 (393)
T ss_dssp HHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSS
T ss_pred HhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccH
Confidence 3467789999998887655431 12457888899999999999999999999999999999999999
Q ss_pred hhHHHHHH--HHHHhhcccHHHHHHHhhccccccccccccCchhH---HHHHHHHHhccCChHHHHHHccCChhHHHhhc
Q 023407 173 KNRLKVYE--GLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTF---IFYTVLTSIISLDRVSLKQKVVDAPEILTVIG 247 (282)
Q Consensus 173 rnrLkvy~--gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~---a~Y~~l~aLasl~R~eLk~kvl~~~e~~~~l~ 247 (282)
+.+.+.|. |.++...++|..+...++..+++++..+-++.++. +.-.++||+.+ ++.-....+++.|.+.+.-.
T Consensus 166 ~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~-~~i~~f~eLL~~p~i~~L~~ 244 (393)
T 4b4t_O 166 RITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLG-DKIYNFGELLHHPIMETIVN 244 (393)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHC-CSSCSTHHHHHSCCTTSSCS
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcC-CCCCChHHHhCChHHHHhhc
Confidence 88888886 56667889999999999999999887777777653 55556666654 33333345567777766422
Q ss_pred --CCchHHHHHHHHhcCChhHHHHHHHH
Q 023407 248 --KIPYLSEFLNSLYDCQYKSFFSAFGE 273 (282)
Q Consensus 248 --~~P~l~~ll~sfy~~~Y~~~~~~L~~ 273 (282)
..+.+.+++..|..++|..|...+..
T Consensus 245 ~~~~~~l~~Ll~~f~~g~~~~f~~~~~~ 272 (393)
T 4b4t_O 245 DSNYDWLFQLLNALTVGDFDKFDSLIKV 272 (393)
T ss_dssp SSSTTHHHHHHHHHHHTCHHHHHHHCCH
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 24568999999999999999876543
No 6
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=0.00016 Score=55.46 Aligned_cols=126 Identities=17% Similarity=0.030 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCc---hhHHHHHHHHHHHHHHccChHHH
Q 023407 77 LKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV---GQKMDLVFYTLQLGFFYMDFDLI 153 (282)
Q Consensus 77 l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~---~~~id~~l~~irv~~~~~d~~~v 153 (282)
++-++.-++-+++......+..++..+|..|...|+.++|++.|.++.+..... .....+..++-.+....|++...
T Consensus 29 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 108 (164)
T 3ro3_A 29 VIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 108 (164)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444444444545556666789999999999999999999999988765433 33455677777777888999999
Q ss_pred HHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 154 SKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 154 ~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
..+..+|-.+....++...........|...+..|++.+|.+.|-.++.
T Consensus 109 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 109 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999998877666666667777778888899999999998877654
No 7
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.96 E-value=0.00024 Score=57.67 Aligned_cols=132 Identities=9% Similarity=0.042 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCch----hHHHHHHHHHHHHHHcc
Q 023407 73 IEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG----QKMDLVFYTLQLGFFYM 148 (282)
Q Consensus 73 n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~----~~id~~l~~irv~~~~~ 148 (282)
.++-++-++.-++-+++.......-.++..+|..|...|+.++|.+.|.++.+.+...+ .......++-.+.+..|
T Consensus 42 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g 121 (203)
T 3gw4_A 42 FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG 121 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC
Confidence 33445555555665665556677788899999999999999999999999888754433 45666777778888889
Q ss_pred ChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 149 DFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 149 d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
++.....++.+|-.+....+++..........|......|++.+|...|-.++..+
T Consensus 122 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 122 DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 99999999999998887777776666666777888889999999999998886544
No 8
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.94 E-value=0.00013 Score=57.01 Aligned_cols=106 Identities=15% Similarity=0.032 Sum_probs=86.6
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH-hhCCCcch
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF-EEGGDWER 172 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~-e~ggdw~r 172 (282)
.+...++..+|.-|++.|++++|+++|.++.+..... .+...++-.+-+..|++.....+..+|-.+- +...+|..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 4556788899999999999999999999999876543 4566777778888899999999999997763 33556666
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 173 KNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 173 rnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
..+.-.-.|......++|.+|.+.|-.++.
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666778899999999999999877764
No 9
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.86 E-value=0.00097 Score=59.39 Aligned_cols=178 Identities=14% Similarity=0.054 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchh---HHHHHHHHHHHHHHccChHHH
Q 023407 77 LKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ---KMDLVFYTLQLGFFYMDFDLI 153 (282)
Q Consensus 77 l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~---~id~~l~~irv~~~~~d~~~v 153 (282)
++-++.-++-+++.........++..+|..|.+ |++++|+++|.++.+.....+. ..+...++-.+....|++...
T Consensus 96 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 174 (307)
T 2ifu_A 96 VQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEA 174 (307)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 333444444444433344567889999999999 9999999999999887655443 467778888888889999999
Q ss_pred HHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCchhH-HHHHHHHHhccCChHHH
Q 023407 154 SKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTF-IFYTVLTSIISLDRVSL 232 (282)
Q Consensus 154 ~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~-a~Y~~l~aLasl~R~eL 232 (282)
..+..+|-.+....+++....+.....|+..+..+++.+|...|-.++ ..+ ........ .....+-+.-.-+-...
T Consensus 175 ~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p--~~~~~~e~~~l~~l~~~~~~~d~~~~ 251 (307)
T 2ifu_A 175 AASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP--GFSGSEDCAALEDLLQAYDEQDEEQL 251 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST--TSTTSHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC--CCCCCHHHHHHHHHHHHHHhcCHHHH
Confidence 999999988876544433334455556777788899999999988876 322 11122222 22222333333344455
Q ss_pred HHHccCChhHHHhhcCCchHHHHHHHHhcC
Q 023407 233 KQKVVDAPEILTVIGKIPYLSEFLNSLYDC 262 (282)
Q Consensus 233 k~kvl~~~e~~~~l~~~P~l~~ll~sfy~~ 262 (282)
+. +...+.+ ....|+...+...++..
T Consensus 252 ~~-~~~~~~~---~~ld~~~~~~~~~l~~~ 277 (307)
T 2ifu_A 252 LR-VCRSPLV---TYMDNDYAKLAISLKVP 277 (307)
T ss_dssp HH-HTTSHHH---HTSCHHHHHHHHTCCCC
T ss_pred HH-HHhCchh---hhhhHHHHHHHHhCCCC
Confidence 54 6665444 34578888877766554
No 10
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.84 E-value=0.00026 Score=54.27 Aligned_cols=110 Identities=13% Similarity=-0.002 Sum_probs=91.2
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchh---HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCc
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ---KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDW 170 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~---~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw 170 (282)
.....++..+|..|...|+.++|++.|.++.+.+...+. .......+-.+.+..|++.....+..+|-.+....++.
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 445678999999999999999999999999887654443 34466677777788899999999999999998877777
Q ss_pred chhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 171 ERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 171 ~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
..........|......++|.+|...|-.++..
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 667777778888999999999999999887643
No 11
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.78 E-value=0.0072 Score=51.62 Aligned_cols=132 Identities=11% Similarity=0.007 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCch---hHHHHHHHHHHHHHHccC
Q 023407 73 IEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG---QKMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 73 n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~---~~id~~l~~irv~~~~~d 149 (282)
.++-++-++.-++-++..........++..+|..|...|+.++|++.|.++.+.+...+ ........+.++....|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 33444444555555555555666777899999999999999999999999887764433 344567778888888899
Q ss_pred hHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 150 FDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 150 ~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
+.....++.++-.+....++...........|......|+|.+|...|-.++..+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999999999998887766665566666777888889999999999988876543
No 12
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.73 E-value=0.0044 Score=53.00 Aligned_cols=130 Identities=17% Similarity=0.044 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCch---hHHHHHHHHHHHHHHccCh
Q 023407 74 EDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG---QKMDLVFYTLQLGFFYMDF 150 (282)
Q Consensus 74 ~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~---~~id~~l~~irv~~~~~d~ 150 (282)
++-++-++.-++-+..+.....+..++..+|..|...|+.++|.+.|.++.+.+...+ ........+.++.+..|++
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 3444455555555556666677778999999999999999999999999887654433 3456677777888888999
Q ss_pred HHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 151 DLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 151 ~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
.....++.+|-.+....++...........|......|++.+|...|-.++..
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999998887766665555666666778888899999999998877543
No 13
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.70 E-value=0.0093 Score=52.50 Aligned_cols=129 Identities=10% Similarity=0.021 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhH---HHHHHHHHHHHHHc-cChH
Q 023407 76 ELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQK---MDLVFYTLQLGFFY-MDFD 151 (282)
Q Consensus 76 ~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~---id~~l~~irv~~~~-~d~~ 151 (282)
-++-++.-++-+.+.......-.++..+|..|.+.|+.++|+.+|.++.+.....|.. ...+.++-.+-... |+++
T Consensus 56 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~ 135 (292)
T 1qqe_A 56 AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA 135 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH
Confidence 3444444444444433445567789999999999999999999999999877655554 34455555555554 9999
Q ss_pred HHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 152 LISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 152 ~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
....+..+|-.+....++....+....-.|..++..|+|.+|...|-.++...
T Consensus 136 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999988866444433233333445778888999999999998886544
No 14
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.66 E-value=0.00038 Score=58.61 Aligned_cols=127 Identities=9% Similarity=-0.019 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhh--CHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccc-----cCchhHHHHHHHHHHHHHHccC
Q 023407 77 LKKLDDRIADAEENL--GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKT-----VAVGQKMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 77 l~~Le~~lk~~~~nl--~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~-----~s~~~~id~~l~~irv~~~~~d 149 (282)
++-++.-++-++... .......++..+|..|...|++++|++.|.++.+.. .........+.++-++....|+
T Consensus 21 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 21 VPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 334444444444443 235667789999999999999999999999998776 3446677888889999999999
Q ss_pred hHHHHHHHHHHHHHHhhC--CCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 150 FDLISKSIDKAKSLFEEG--GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 150 ~~~v~~~i~kA~~~~e~g--gdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
+.....+..+|-.+.++- .+...........|..+...|+|.+|...|-.++..
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999998887652 222333445555677778899999999999888654
No 15
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.65 E-value=0.0089 Score=53.15 Aligned_cols=131 Identities=10% Similarity=-0.006 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCc---hhHHHHHHHHHHHHHHccC
Q 023407 73 IEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV---GQKMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 73 n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~---~~~id~~l~~irv~~~~~d 149 (282)
.++-++-++.-++-.+..........++..+|..|...|+.++|++.|.++.+.+... ........++..+.+..|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3444445555555555555566777789999999999999999999999988765443 3445567777888888899
Q ss_pred hHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 150 FDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 150 ~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
+.....+..+|-.+....++...........|..+...|+|.+|...|-.++..
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 999999999998887766665555666666777888899999999998887653
No 16
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.63 E-value=0.011 Score=53.13 Aligned_cols=129 Identities=12% Similarity=0.028 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCc---hhHHHHHHHHHHHHHHccChH
Q 023407 75 DELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV---GQKMDLVFYTLQLGFFYMDFD 151 (282)
Q Consensus 75 ~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~---~~~id~~l~~irv~~~~~d~~ 151 (282)
+-++-++.-++-.++......+..++..+|..|...|++++|++.|.++.+.+... .........+.++.+..|++.
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 33344444444444444556677789999999999999999999999988766443 334456777888888889999
Q ss_pred HHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 152 LISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 152 ~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
....++.+|-.+....++...........|..++..|+|.+|...|-.++.-
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999888766665555666667788888999999999999887643
No 17
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.61 E-value=0.0073 Score=53.71 Aligned_cols=132 Identities=17% Similarity=0.043 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCch---hHHHHHHHHHHHHHHccC
Q 023407 73 IEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG---QKMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 73 n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~---~~id~~l~~irv~~~~~d 149 (282)
.++-++-++.-++-..++.....+..++..+|..|...|+.++|++.|.++.+.....+ ........+.++....|+
T Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 282 (406)
T 3sf4_A 203 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 282 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc
Confidence 33445555666666666666677778999999999999999999999999887654333 335567777788888899
Q ss_pred hHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 150 FDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 150 ~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
+.....+..+|-.+...-++...........|..+...|+|.+|...|-.++..+
T Consensus 283 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 283 YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999887766665556666677788889999999999999886543
No 18
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.55 E-value=0.0023 Score=47.37 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=84.1
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh-CCCcchhh
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE-GGDWERKN 174 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~-ggdw~rrn 174 (282)
.-.++..+|..|.+.|+++.|++.|.++.+..... .+..+.+..+.+..|++.....+..++-..... +.+|....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 34678899999999999999999999998765432 466777788888899999999999999877543 45555456
Q ss_pred HHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 175 RLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 175 rLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
......|......|+|.+|...|-.++.
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6667778888999999999999988765
No 19
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.52 E-value=0.0089 Score=51.03 Aligned_cols=126 Identities=13% Similarity=0.084 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHh--hCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccc-----cCchhHHHHHHHHHHHHHHccC
Q 023407 77 LKKLDDRIADAEEN--LGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKT-----VAVGQKMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 77 l~~Le~~lk~~~~n--l~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~-----~s~~~~id~~l~~irv~~~~~d 149 (282)
++-++.-++-+++. ........++..+|..|...|++++|++.|.++.+.+ ............+.++.+..|+
T Consensus 89 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 168 (311)
T 3nf1_A 89 ANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 168 (311)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Confidence 33344444444443 2235667789999999999999999999999999876 3346677888888999999999
Q ss_pred hHHHHHHHHHHHHHHhhC--CCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 150 FDLISKSIDKAKSLFEEG--GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 150 ~~~v~~~i~kA~~~~e~g--gdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
+.....++.++-...+.. ++...........|..++..|+|.+|...|-.++.
T Consensus 169 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 169 YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999998887653 33333445555567778889999999999988864
No 20
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.50 E-value=0.0026 Score=49.38 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=81.0
Q ss_pred CHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcc
Q 023407 92 GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 171 (282)
Q Consensus 92 ~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~ 171 (282)
++-+.-.++..+|.-|++.|++++|+++|.++.+..... .+.++++-.+-+..|++.......++|-.+-. .+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~-- 80 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---AILYSNRAACLTKLMEFQRALDDCDTCIRLDS--KF-- 80 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC--
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--hh--
Confidence 445667788999999999999999999999998765443 45667777778888999999999998876521 12
Q ss_pred hhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 172 RKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 172 rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.+.-...|..++..|+|.+|.+.|-.++.
T Consensus 81 --~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 81 --IKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23445678888999999999999988764
No 21
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.48 E-value=0.0039 Score=52.27 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHh--hCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccc-----cCchhHHHHHHHHHHHHHHccC
Q 023407 77 LKKLDDRIADAEEN--LGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKT-----VAVGQKMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 77 l~~Le~~lk~~~~n--l~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~-----~s~~~~id~~l~~irv~~~~~d 149 (282)
++-++.-++-++.. ........++..+|..|...|++++|++.|.++.+.+ ...........++..+.+..|+
T Consensus 63 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 142 (283)
T 3edt_B 63 AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK 142 (283)
T ss_dssp HHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC
Confidence 33444444444443 2235567789999999999999999999999998775 2235667888888889999999
Q ss_pred hHHHHHHHHHHHHHHhh--CCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 150 FDLISKSIDKAKSLFEE--GGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 150 ~~~v~~~i~kA~~~~e~--ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
+.....+..++-...+. |++...........|..++..|++.+|...|-.++..
T Consensus 143 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999888654 2333334555566677888899999999999888653
No 22
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.47 E-value=0.0099 Score=53.54 Aligned_cols=130 Identities=16% Similarity=0.087 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCch---hHHHHHHHHHHHHHHccChH
Q 023407 75 DELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG---QKMDLVFYTLQLGFFYMDFD 151 (282)
Q Consensus 75 ~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~---~~id~~l~~irv~~~~~d~~ 151 (282)
+-++-++.-++-...+........++..+|..|...|++++|++.|.++.+.....+ .....+..+.++....|++.
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 344445555555556566667778999999999999999999999999887664433 34566777888888889999
Q ss_pred HHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 152 LISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 152 ~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
....++.+|-.+....++...........|..+...|++.+|...|-.++.-+
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99999999999887666655556666667788889999999999998886544
No 23
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.39 E-value=0.0019 Score=52.16 Aligned_cols=109 Identities=8% Similarity=0.037 Sum_probs=88.6
Q ss_pred HHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchh---HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCC-Cc
Q 023407 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ---KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG-DW 170 (282)
Q Consensus 95 eIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~---~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~gg-dw 170 (282)
..-.++..+|..|...|++++|++.|.++.+.+...+. ......++-.+....|++.....+..+|-.+.+..+ ++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 34677899999999999999999999999987664443 455566666777788999999999999999988766 44
Q ss_pred chhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 171 ERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 171 ~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
..........|......|+|.+|...|-.++..
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455666667788888999999999999988654
No 24
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.38 E-value=0.0055 Score=52.39 Aligned_cols=111 Identities=11% Similarity=0.035 Sum_probs=91.1
Q ss_pred HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccc-----cCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh-
Q 023407 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKT-----VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE- 166 (282)
Q Consensus 93 ~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~-----~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~- 166 (282)
......++..+|..|...|++++|++.|.++.+.. ............+..+....|++.....+..++-.+.+.
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 45667789999999999999999999999998876 334667888889999999999999999999999888654
Q ss_pred -CCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 167 -GGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 167 -ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
|++...........|..+...|+|.+|...|-.++..
T Consensus 145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2444444555666677888999999999999888654
No 25
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.37 E-value=0.0019 Score=56.81 Aligned_cols=107 Identities=7% Similarity=0.003 Sum_probs=79.1
Q ss_pred HHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccc---cCchh-HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCc
Q 023407 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKT---VAVGQ-KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDW 170 (282)
Q Consensus 95 eIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~---~s~~~-~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw 170 (282)
..-.++..+|..|...|++++|++.|.++.+.+ ..... .+....++-.+.+..|+++....+.++|-.+....++.
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 345678888888888899888888888887443 22222 33677788888888888888888888888877666666
Q ss_pred chhhHHHHHHHHHHhhcccHHHH-HHHhhccc
Q 023407 171 ERKNRLKVYEGLYCMSTRNFKKA-ASLFLDSI 201 (282)
Q Consensus 171 ~rrnrLkvy~gL~~l~~r~f~~A-A~lfld~~ 201 (282)
..........|......|++.+| ...|-.++
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 66677777778888888888888 55455554
No 26
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.33 E-value=0.0027 Score=57.53 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=88.4
Q ss_pred HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCch----hHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCC
Q 023407 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG----QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG 168 (282)
Q Consensus 93 ~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~----~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~gg 168 (282)
......++..+|..|...|+.+.|++.|.++.+.....+ .......++-.+....|+++....+..+|-.+..+.+
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 218 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK 218 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence 445678899999999999999999999999887764443 3455566666777778999999999999998887766
Q ss_pred CcchhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 169 DWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 169 dw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
|...........|......|+|.+|...|-.++.-
T Consensus 219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 66555566666788888899999999999888653
No 27
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.30 E-value=0.0055 Score=55.49 Aligned_cols=130 Identities=10% Similarity=0.001 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHhhC-HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchh---HHHHHHHHHHHHHHccC
Q 023407 74 EDELKKLDDRIADAEENLG-ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ---KMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 74 ~~~l~~Le~~lk~~~~nl~-~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~---~id~~l~~irv~~~~~d 149 (282)
++-++-++.-++-++++.. ...+..++..+|..|...|++++|++.|.++.+.+...+. ......++-.+....|+
T Consensus 160 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 3444555555655555544 5667788999999999999999999999999987654443 33455666666677899
Q ss_pred hHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 150 FDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 150 ~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
+.....+..+|-.+.+..++...........|......|++.+|...|-.++.-
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999988876663334566666777888899999999999888653
No 28
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.29 E-value=0.0041 Score=55.25 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhH---HHHHHHHHHHHHHccCh
Q 023407 74 EDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQK---MDLVFYTLQLGFFYMDF 150 (282)
Q Consensus 74 ~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~---id~~l~~irv~~~~~d~ 150 (282)
++-++-++.-++-+.+.........++..+|..|.+.|++++|+++|.++.+.....|.. .+...++-.+-.. |++
T Consensus 53 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~ 131 (307)
T 2ifu_A 53 EQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL 131 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH
Confidence 333444444455455554556778889999999999999999999999988765544443 4444555555545 899
Q ss_pred HHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 151 DLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 151 ~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
.....+..+|-.+....+++........-.|..+...|+|.+|...|-.++..+
T Consensus 132 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 132 SKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999998877656654444444555777888999999999999887644
No 29
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.28 E-value=0.0037 Score=54.87 Aligned_cols=108 Identities=7% Similarity=-0.016 Sum_probs=91.7
Q ss_pred HHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccc----cCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCc
Q 023407 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKT----VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDW 170 (282)
Q Consensus 95 eIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~----~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw 170 (282)
....++..+|..|...|+++.|++.|.++.+.. ......+.++.++-.+.+..|++.....+..+|-.+...-++.
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 345579999999999999999999999988543 3445667788999999999999999999999999988777777
Q ss_pred chhhHHHHHHHHHHhhcc-cHHHHHHHhhcccc
Q 023407 171 ERKNRLKVYEGLYCMSTR-NFKKAASLFLDSIS 202 (282)
Q Consensus 171 ~rrnrLkvy~gL~~l~~r-~f~~AA~lfld~~~ 202 (282)
..........|......| +|.+|.+.|-.++.
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 777888888999999999 57999988887754
No 30
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.27 E-value=0.017 Score=52.32 Aligned_cols=130 Identities=8% Similarity=-0.057 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHhhC-HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchh---HHHHHHHHHHHHHHccC
Q 023407 74 EDELKKLDDRIADAEENLG-ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ---KMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 74 ~~~l~~Le~~lk~~~~nl~-~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~---~id~~l~~irv~~~~~d 149 (282)
..-++-++.-++-++++.. ...+..++..+|..|...|+++.|++.|.++.+.+...+. ......++-.+....|+
T Consensus 158 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 3344455555555555544 5578889999999999999999999999999987654443 44455666666677899
Q ss_pred hHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 150 FDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 150 ~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
++....+..+|-.+.+..++... .......|......|++.+|...|-.++...
T Consensus 238 ~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999998776555554 6666667888889999999999998886543
No 31
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.26 E-value=0.0035 Score=56.90 Aligned_cols=111 Identities=9% Similarity=-0.034 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCch----hHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCC
Q 023407 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG----QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG 168 (282)
Q Consensus 93 ~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~----~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~gg 168 (282)
..+...++..+|..|...|+.+.|++.|.++.+.....+ .......++-.+....|+++....+..+|-.+..+-+
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 456778899999999999999999999999887664433 3456666666777778999999999999999887766
Q ss_pred CcchhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 169 DWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 169 dw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
+...........|......|+|.+|...|-.++..
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 66555555566788888899999999999998764
No 32
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.18 E-value=0.0042 Score=49.35 Aligned_cols=101 Identities=9% Similarity=-0.047 Sum_probs=81.3
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccC---------------chhHHHHHHHHHHHHHHccChHHHHHHHHHH
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---------------VGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s---------------~~~~id~~l~~irv~~~~~d~~~v~~~i~kA 160 (282)
.-..+..+|..+.+.|+++.|++.|.++.+.+.. ......+++++-.+.+..|++.....+..+|
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4556889999999999999999999999987432 3445678888888888999999999999998
Q ss_pred HHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 161 KSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 161 ~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
-.+- .+ ..+.....|..++..|+|.+|...|-.++.
T Consensus 90 l~~~---p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 90 LKRE---ET---NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHS---TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcC---Cc---chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 7752 22 234445678889999999999999988765
No 33
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.13 E-value=0.0057 Score=45.84 Aligned_cols=104 Identities=8% Similarity=0.012 Sum_probs=82.0
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
++..+|..+.+.|++++|++.|.++.+.........+..+.+-.+.+..|++.....+..++-..- .+.........
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~ 80 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKAAGGLL 80 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCcccHHHHH
Confidence 467789999999999999999999988766666666788888888889999999999988876642 23222344456
Q ss_pred HHHHHHhhcccHHHHHHHhhccccccc
Q 023407 179 YEGLYCMSTRNFKKAASLFLDSISTFT 205 (282)
Q Consensus 179 y~gL~~l~~r~f~~AA~lfld~~~tft 205 (282)
..|...+..|++.+|...|-.++..++
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 678888899999999999988876553
No 34
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.13 E-value=0.007 Score=46.02 Aligned_cols=100 Identities=14% Similarity=-0.002 Sum_probs=81.7
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-..+..+|..+.+.|++++|++.|.++.+.........+.++.+..+.+..|++.....+..++-..-. .+ ...
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~ 101 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG--GD----VKA 101 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CC----HHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cC----HHH
Confidence 356788999999999999999999999988776655678888888888899999999999988876521 12 344
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
....|..+...++|.+|...|-.++.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888889999999999988764
No 35
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.0011 Score=48.33 Aligned_cols=104 Identities=5% Similarity=-0.127 Sum_probs=75.0
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..+.+.|++++|++.|.++.+..... .+..+++-.+-+..|++.....+..+|-.+-...+++....+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 467889999999999999999999998765443 45677788888889999999999999877643223333335555
Q ss_pred HHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
...|......|++..|...|-...+.|
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~~~~~ 108 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDELPEGY 108 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHHhHHHh
Confidence 566667777776666655554444333
No 36
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.98 E-value=0.012 Score=51.63 Aligned_cols=106 Identities=9% Similarity=-0.018 Sum_probs=82.6
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccC---chhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcch-h
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER-K 173 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s---~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~r-r 173 (282)
..+..+|.+|...|+.++|++.|.++.+.... .........++-.+-...|+++....+..+|-...+..++... .
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~ 195 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence 34567899999999999999999999875433 3345667777778888889999999999999987765443322 2
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 174 NRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 174 nrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
.....-.|..+...|+|.+|...|-.++.-
T Consensus 196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 255566688888999999999999888653
No 37
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.012 Score=44.34 Aligned_cols=96 Identities=10% Similarity=-0.020 Sum_probs=77.5
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
..+..+|..+.+.|++++|++.|.++.+..... .+..+++-.+-+..|++.....+..+|-.+- .++ ....
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~---~~~~ 75 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNF---VRAY 75 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC---HHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCc---HHHH
Confidence 568899999999999999999999998876543 3677788888888999999999999987753 221 3344
Q ss_pred HHHHHHHhhcccHHHHHHHhhcccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
...|..++..|+|.+|...|-.++.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 5678888999999999999887754
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.90 E-value=0.009 Score=55.02 Aligned_cols=126 Identities=16% Similarity=0.061 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccC------chhHHHHHHHHHHHHHHccCh
Q 023407 77 LKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA------VGQKMDLVFYTLQLGFFYMDF 150 (282)
Q Consensus 77 l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s------~~~~id~~l~~irv~~~~~d~ 150 (282)
+..++..+....+.+.....-..+..+|..|..-|+.++|+++|.++.+-... ....+....++-.+-...|++
T Consensus 31 l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~ 110 (472)
T 4g1t_A 31 LDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL 110 (472)
T ss_dssp HHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh
Confidence 34455555555455555555567889999999999999999999998764321 112233445666677778999
Q ss_pred HHHHHHHHHHHHHHhhCCCcch--hhHHHHHHHHHH--hhcccHHHHHHHhhcccc
Q 023407 151 DLISKSIDKAKSLFEEGGDWER--KNRLKVYEGLYC--MSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 151 ~~v~~~i~kA~~~~e~ggdw~r--rnrLkvy~gL~~--l~~r~f~~AA~lfld~~~ 202 (282)
.....+.++|..+...-.+... ....-+-.|... ++.++|.+|...|-.++.
T Consensus 111 ~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~ 166 (472)
T 4g1t_A 111 SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 9999999999988765333222 233444456544 456789999999988754
No 39
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.88 E-value=0.012 Score=43.57 Aligned_cols=98 Identities=12% Similarity=0.058 Sum_probs=77.8
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhH
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnr 175 (282)
.-.++..+|..+.+.|++++|++.|.++.+..... .+..+.+..+.+..|++.....+..+|-..-. . ...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~----~~~ 85 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEP--T----FIK 85 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--T----CHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--C----chH
Confidence 35678899999999999999999999988764332 56777888888888999999999998877521 1 233
Q ss_pred HHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 176 LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 176 Lkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.....|...+..++|.+|...|-.++.
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445667788889999999999988764
No 40
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.87 E-value=0.037 Score=48.58 Aligned_cols=128 Identities=10% Similarity=-0.041 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHh-CCHHHHHHHHHHhhccccCchh---HHHHHHHHHHHHHHccCh
Q 023407 75 DELKKLDDRIADAEENLGESEVREAHLAKSLFYIQI-GDKEKALEQLKVTESKTVAVGQ---KMDLVFYTLQLGFFYMDF 150 (282)
Q Consensus 75 ~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~i-Gd~~~A~k~y~~~~e~~~s~~~---~id~~l~~irv~~~~~d~ 150 (282)
+-++-++.-++-+.++........++..+|..|.+. |+.++|+++|.++.+.....++ ..++..++-.+-+..|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 334445555555545444455677899999999996 9999999999999887654433 356677788888888999
Q ss_pred HHHHHHHHHHHHHHhhCCCcc-hhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 151 DLISKSIDKAKSLFEEGGDWE-RKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 151 ~~v~~~i~kA~~~~e~ggdw~-rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.....+..+|-.+....++.. .....-.-.|+..+..|++.+|...|-.++.
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999887653222210 0111233457788899999999998877754
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.014 Score=48.34 Aligned_cols=102 Identities=10% Similarity=0.100 Sum_probs=84.6
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh-CCCcchhhH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE-GGDWERKNR 175 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~-ggdw~rrnr 175 (282)
..++..+|..+.+.|++++|++.|.++.+.. ...+..+.+..+-...|++.....+..++-..... +.++.....
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 4678999999999999999999999998776 23567888888889999999999999999876543 235554566
Q ss_pred HHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 176 LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 176 Lkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.....|......++|.+|...|-.++.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 777778888899999999999988765
No 42
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.83 E-value=0.043 Score=39.39 Aligned_cols=96 Identities=11% Similarity=-0.050 Sum_probs=75.9
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..+.+.|++++|++.|.++.+..... .+..+.+..+.+..|++.....+..++-... .+ .....
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~---~~~~~ 75 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PD---WGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT---CHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---cc---cHHHH
Confidence 568889999999999999999999988765433 4567777788888899999999988887652 11 23345
Q ss_pred HHHHHHHhhcccHHHHHHHhhcccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
...|......|+|.+|...|-.++.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5667788889999999999887765
No 43
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.77 E-value=0.017 Score=45.81 Aligned_cols=98 Identities=10% Similarity=-0.045 Sum_probs=79.6
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhH
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnr 175 (282)
.-..+..+|..|.+.|++++|++.|.++.+..... .+.++++-.+.+..|++.....+..+|-.+-. .+ ..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~----~~ 80 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KY----SK 80 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CC----HH
Confidence 35678899999999999999999999999876543 56778888888889999999999999877632 12 34
Q ss_pred HHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 176 LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 176 Lkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.....|..++..++|.+|...|-.++.
T Consensus 81 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 81 AWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445668888899999999999988864
No 44
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.77 E-value=0.029 Score=43.33 Aligned_cols=100 Identities=10% Similarity=-0.071 Sum_probs=78.2
Q ss_pred HHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhh
Q 023407 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKN 174 (282)
Q Consensus 95 eIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrn 174 (282)
+.-.++..+|..+...|+++.|++.|.++.+..... .+..+.+..+.+..|++.....+..++-..-. .+ .
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~----~ 81 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDK--KY----I 81 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----H
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cc----H
Confidence 345668899999999999999999999988765433 56677788888889999999999998877631 12 2
Q ss_pred HHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 175 RLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 175 rLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
......|......|+|.+|...|-.++..
T Consensus 82 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 82 KGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455677788899999999999887653
No 45
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.75 E-value=0.021 Score=43.05 Aligned_cols=97 Identities=7% Similarity=-0.074 Sum_probs=78.2
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-..+..+|..+.+.|+++.|++.|.++.+..... .+..+.+-.+.+..|++.....+..+|-.+-. . ....
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~ 79 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDG--Q----SVKA 79 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T----CHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--h----hHHH
Confidence 3568899999999999999999999998876543 46778888888889999999999998877531 2 2334
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
....|..+...++|.+|-..|-.++.
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55678888899999999999888764
No 46
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.74 E-value=0.028 Score=45.97 Aligned_cols=100 Identities=8% Similarity=-0.047 Sum_probs=79.7
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCch-------------hHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG-------------QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~-------------~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
-..+..+|..+.+.|++++|++.|.++.+.+.... ..+++..++-++.+..|++.....+..+|-.+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44578899999999999999999999987654432 12477888888888999999999999998876
Q ss_pred HhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 164 FEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 164 ~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
-. + ..+.....|..++..++|.+|...|-.++.
T Consensus 118 ~p---~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 DK---N---NVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp ST---T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred Cc---c---cHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 21 1 234556678888999999999999988764
No 47
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.74 E-value=0.04 Score=40.23 Aligned_cols=100 Identities=10% Similarity=-0.041 Sum_probs=79.0
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchh
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 173 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rr 173 (282)
...-.++..+|..+...|+++.|++.|.++....... ......+.++.+..|++.....+..++-..-. .+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~---- 79 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--AY---- 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--cC----
Confidence 3345678899999999999999999999988765433 56778888888889999999999998876521 12
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 174 NRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 174 nrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.......|..+...++|.+|...|-.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 33456667788899999999999988765
No 48
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.73 E-value=0.011 Score=51.73 Aligned_cols=105 Identities=7% Similarity=-0.069 Sum_probs=81.6
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchh---HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhC-CCcchhh
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ---KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG-GDWERKN 174 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~---~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~g-gdw~rrn 174 (282)
.+..+|.+|...|+.+.|++.|.++.+.....+. .+.+..++-.+....|+++....+..+|-...+.- ++.....
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 4556999999999999999999999986544433 35556666666777799999999999999887764 4444445
Q ss_pred HHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 175 RLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 175 rLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
..-.-.|..+...++|.+|-..|-.++.-
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55566677888999999999999888653
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.72 E-value=0.023 Score=45.35 Aligned_cols=96 Identities=10% Similarity=-0.101 Sum_probs=72.0
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
..|..+|..|.+.||+++|+++|.++.+..... .+..+.+..+-...|++........++..... . .....
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~ 76 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN---VETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--T----SAEAY 76 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--C----CHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--h----hHHHH
Confidence 458889999999999999999999988765432 46677777888888999988888888766532 1 22334
Q ss_pred HHHHHHHhhcccHHHHHHHhhcccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
...|......+++..|...|-.++.
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~ 101 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIA 101 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4557777788888888888777654
No 50
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.69 E-value=0.011 Score=42.32 Aligned_cols=100 Identities=4% Similarity=-0.065 Sum_probs=76.8
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
++..+|..|.+.|++++|++.|.++.+..... .+.++.+-.+.+..|++.....+..++-... .+ ........
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~~ 80 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINVI---ED-EYNKDVWA 80 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CC-TTCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cc-cchHHHHH
Confidence 46678999999999999999999988765443 3566777788888899999999998887652 12 11234455
Q ss_pred HHHHHHhhc-ccHHHHHHHhhccccccc
Q 023407 179 YEGLYCMST-RNFKKAASLFLDSISTFT 205 (282)
Q Consensus 179 y~gL~~l~~-r~f~~AA~lfld~~~tft 205 (282)
..|..++.. ++|++|.+.|-.++...+
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 667778889 999999999988876543
No 51
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.55 E-value=0.074 Score=47.42 Aligned_cols=127 Identities=10% Similarity=0.043 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHhhCH--HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCch--hHHHHHHHHHHHHHHccChHH
Q 023407 77 LKKLDDRIADAEENLGE--SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG--QKMDLVFYTLQLGFFYMDFDL 152 (282)
Q Consensus 77 l~~Le~~lk~~~~nl~~--eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~--~~id~~l~~irv~~~~~d~~~ 152 (282)
++-++.-++-++...+. .....++..+|..|...|++++|.+.+.++.+.+...+ +.+.....+-++....|++..
T Consensus 113 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (373)
T 1hz4_A 113 WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN 192 (373)
T ss_dssp HHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 34444445444444333 34667788899999999999999999999987765433 345677788899999999999
Q ss_pred HHHHHHHHHHHHhhCCCc-chhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 153 ISKSIDKAKSLFEEGGDW-ERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 153 v~~~i~kA~~~~e~ggdw-~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
...++.++..+....++. ..........+...+..|++.+|...+-.++..
T Consensus 193 A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 193 ARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 999999998886543331 111111112334467899999999998877653
No 52
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.54 E-value=0.05 Score=39.62 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=68.3
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..|...|+.++|++.|.++.+..... ...+..+.++....|++.....+..++-..-. .+ ....
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~ 72 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RS----AEAW 72 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TC----HHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--Cc----hHHH
Confidence 357788899999999999999999887654332 34566677777778888888888888765421 11 2223
Q ss_pred HHHHHHHhhcccHHHHHHHhhcccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
...|..+...|++.+|...|-.++.
T Consensus 73 ~~l~~~~~~~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 73 YNLGNAYYKQGDYDEAIEYYQKALE 97 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3446667778899998888877654
No 53
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.54 E-value=0.037 Score=45.01 Aligned_cols=104 Identities=12% Similarity=0.027 Sum_probs=80.9
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCC---------
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG--------- 168 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~gg--------- 168 (282)
.++..+|..|.+.|++++|++.|.++.+..... .+.++++-.+-+..|++.....+..+|-.......
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 578999999999999999999999988765332 46677888888889999999999999987653211
Q ss_pred -CcchhhHHHHHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 169 -DWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 169 -dw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
............|..+...|++.+|...|-.++...
T Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 111123555677888889999999999998876543
No 54
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.51 E-value=0.095 Score=46.69 Aligned_cols=127 Identities=11% Similarity=-0.060 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCch-----hHHHHHHHHHHHHHHccC
Q 023407 75 DELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG-----QKMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 75 ~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~-----~~id~~l~~irv~~~~~d 149 (282)
+-.+.++.-+.-+...........++..+|..+...|++++|.+.|.++.+.....+ .......++-.+....|+
T Consensus 71 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 71 RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 334445555555555444455667788999999999999999999999887653322 234455567777888999
Q ss_pred hHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 150 FDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 150 ~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
++....+..++-......++.. ........|...+..|++.+|...|-.+..
T Consensus 151 ~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 151 LDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999988876545433 223334456667889999999998877654
No 55
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.48 E-value=0.067 Score=38.61 Aligned_cols=97 Identities=14% Similarity=0.094 Sum_probs=75.1
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-.++..+|..|.+.|+.+.|++.|.++.+..... .+.++.+..+....|++.....+..++-.... .+ ...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~ 79 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NN----AEA 79 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--cc----HHH
Confidence 4567889999999999999999999988765332 46677888888889999999999988866421 11 233
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
....|..+...++|.+|...|-.++.
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44567777889999999998887754
No 56
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.42 E-value=0.036 Score=47.17 Aligned_cols=106 Identities=12% Similarity=0.169 Sum_probs=85.9
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-.++..+|.-+.+.|++++|++.|.++.+.........+..+.+-.+.+..|++.....+.+++-..-- +.......
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a 91 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ---IDPRVPQA 91 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTTHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC---CCchhHHH
Confidence 457889999999999999999999999988777777788899999999999999999999998877531 11222344
Q ss_pred HHHHHHHHhh--------cccHHHHHHHhhccccccc
Q 023407 177 KVYEGLYCMS--------TRNFKKAASLFLDSISTFT 205 (282)
Q Consensus 177 kvy~gL~~l~--------~r~f~~AA~lfld~~~tft 205 (282)
....|...+. .|+|.+|...|-.++..++
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 4556777777 9999999999988876554
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.36 E-value=0.063 Score=45.09 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=57.6
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|..|.+.|+.++|++.|.++.+..... .+....+-.+-+..|++.....+..++-... +. ....
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~-~~~~ 144 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-----TT-DPKV 144 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-----CC-CHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-----CC-cHHH
Confidence 4457777777777777777777777777654332 2455666666666777766666666554431 11 1222
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
....|......++|.+|...|-.++.
T Consensus 145 ~~~l~~~~~~~~~~~~A~~~~~~a~~ 170 (272)
T 3u4t_A 145 FYELGQAYYYNKEYVKADSSFVKVLE 170 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344223334577777777776654
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.35 E-value=0.24 Score=40.96 Aligned_cols=97 Identities=8% Similarity=-0.035 Sum_probs=45.6
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..|.+.|+.++|++.|.++.+ .............+.++.+..|++.....++.++-.... .+ ....
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~ 178 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR--NQ----PSVA 178 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CC----HHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--cc----HHHH
Confidence 3455555555555555555555555554 111222334444555555555555555555555443311 11 2222
Q ss_pred HHHHHHHhhcccHHHHHHHhhccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
...|..+...|++.+|...|-.++
T Consensus 179 ~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444445555555555555443
No 59
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.34 E-value=0.029 Score=44.38 Aligned_cols=96 Identities=6% Similarity=-0.104 Sum_probs=73.0
Q ss_pred HHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhh
Q 023407 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKN 174 (282)
Q Consensus 95 eIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrn 174 (282)
+--.++..+|..|.+.|++++|++.|.++.+..... .+....+-.+-...|++.....+..+|-.+-- .+++.
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~-- 101 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD---PKAHRFLGLLYELEENTDKAVECYRRSVELNP--TQKDL-- 101 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH--
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC--CCHHH--
Confidence 334567899999999999999999999998765433 45677777788888999999999988876531 23222
Q ss_pred HHHHHHHHHHhhcccHHHHHHHhhc
Q 023407 175 RLKVYEGLYCMSTRNFKKAASLFLD 199 (282)
Q Consensus 175 rLkvy~gL~~l~~r~f~~AA~lfld 199 (282)
-...|..++..+++.+|++.|++
T Consensus 102 --~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 102 --VLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp --HHHHHHHHHHHCSSSSHHHHHHH
T ss_pred --HHHHHHHHHHcCChHHHHHHHHH
Confidence 23345666788999999998875
No 60
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.17 Score=41.55 Aligned_cols=101 Identities=11% Similarity=-0.036 Sum_probs=80.3
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchh
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 173 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rr 173 (282)
...-.++..+|..|.+.|++++|++.|.++.+..... .+..+.+..+.+..|++.....+..++-..- .+ .
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~---~ 206 (258)
T 3uq3_A 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PN---F 206 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT---C
T ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---HH---H
Confidence 3445678999999999999999999999998766443 3677888888888999999999999986652 11 2
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 174 NRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 174 nrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
.......|......|++.+|...|-.++..
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344566788888999999999988877643
No 61
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.25 E-value=0.18 Score=41.72 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=78.7
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|..|.+.|+.++|++.|.++.+..... .+..+.+..+.+..|++.....+..++-. .+........
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~ 143 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN---ARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRV 143 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHH
Confidence 4578889999999999999999999988765432 46677888888889999999999999876 1222223444
Q ss_pred HHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
....|..++..|++.+|...|-.++..
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 556677888899999999999888653
No 62
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.23 E-value=0.039 Score=46.39 Aligned_cols=112 Identities=14% Similarity=0.013 Sum_probs=83.0
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..|.+.|++++|++.|.++.+....+......++.+-.+....|++.....+..+|-..-. .+ ....
T Consensus 38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~--~~----~~~~ 111 (272)
T 3u4t_A 38 YIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT--TR----LDMY 111 (272)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TC----THHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc--cc----HHHH
Confidence 37888899999999999999999998885544555566678888888888999988888888877532 22 2344
Q ss_pred HHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHH
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLT 222 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~ 222 (282)
...|..+...|+|.+|...|-.++.. .+.+...|..+.
T Consensus 112 ~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~l~ 149 (272)
T 3u4t_A 112 GQIGSYFYNKGNFPLAIQYMEKQIRP-------TTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHGGGCCS-------SCCCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhhc-------CCCcHHHHHHHH
Confidence 55677778899999999999888764 445555555444
No 63
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.22 E-value=0.2 Score=43.19 Aligned_cols=96 Identities=14% Similarity=0.083 Sum_probs=77.5
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
+.+..+|..+.+.|++++|++.|.++.+..... .+..+.+..+.+..|++.....+..++-..- .+ .....
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~---~~~~~ 74 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIALK---MD---FTAAR 74 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT---CHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CC---cchHH
Confidence 468889999999999999999999998765443 4677888888888999999999999887652 11 12445
Q ss_pred HHHHHHHhhcccHHHHHHHhhcccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
...|..+...|+|.+|...|-.++.
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Confidence 6667788889999999999988765
No 64
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.22 E-value=0.037 Score=47.09 Aligned_cols=109 Identities=6% Similarity=-0.049 Sum_probs=80.6
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHH--------ccChHHHHHHHHHHHHHHhhCC
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF--------YMDFDLISKSIDKAKSLFEEGG 168 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~--------~~d~~~v~~~i~kA~~~~e~gg 168 (282)
..++..+|.-|.+.|++++|++.|.++.+.........+..+.+-.+-+. .|++........++-..--...
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence 56788999999999999999999999988766555666777777777776 7888888888888765421100
Q ss_pred -CcchhhHHH----------HHHHHHHhhcccHHHHHHHhhccccccc
Q 023407 169 -DWERKNRLK----------VYEGLYCMSTRNFKKAASLFLDSISTFT 205 (282)
Q Consensus 169 -dw~rrnrLk----------vy~gL~~l~~r~f~~AA~lfld~~~tft 205 (282)
-+....++. ...|...+..|+|.+|...|-.++..++
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 011111111 5668888999999999999988876554
No 65
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.20 E-value=0.12 Score=41.56 Aligned_cols=121 Identities=13% Similarity=0.037 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHhhC--------HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHH
Q 023407 73 IEDELKKLDDRIADAEENLG--------ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLG 144 (282)
Q Consensus 73 n~~~l~~Le~~lk~~~~nl~--------~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~ 144 (282)
|..+.+.....|.+..+..+ +.+--.++..+|..+.+.|++++|++.|.++.+..... .+.++++-.+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~---~~~~~~lg~~~ 80 (151)
T 3gyz_A 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---VDYIMGLAAIY 80 (151)
T ss_dssp -----CHHHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Confidence 34445555555555443222 23345688999999999999999999999988765433 34567777777
Q ss_pred HHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 145 FFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 145 ~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
...|+++.......+|-.+-- .+++ .....|..++..|+|.+|...|-.++.
T Consensus 81 ~~~g~~~~Ai~~~~~al~l~P--~~~~----~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFALGK--NDYT----PVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHSS--SCCH----HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCC--CCcH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888999999999999987632 2333 345678889999999999999988764
No 66
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.15 E-value=0.069 Score=43.01 Aligned_cols=99 Identities=8% Similarity=-0.109 Sum_probs=58.6
Q ss_pred HHHHHhhhhHHHHh-CCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhH
Q 023407 97 REAHLAKSLFYIQI-GDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (282)
Q Consensus 97 r~a~~~la~~~~~i-Gd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnr 175 (282)
..++..+|..|... |+.++|++.|.++.+ ........+..+.+.++....|++.....+..++-.... .+ ..
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~ 148 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP--QF----PP 148 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TC----HH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----ch
Confidence 34566677777777 777777777777666 222233455666666666667777776666666654321 11 22
Q ss_pred HHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 176 LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 176 Lkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.....|..++..|++.+|...|-.++.
T Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 149 AFKELARTKMLAGQLGDADYYFKKYQS 175 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333445555666777777766666543
No 67
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.14 E-value=0.084 Score=45.24 Aligned_cols=102 Identities=13% Similarity=0.006 Sum_probs=70.8
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcc---hhh
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE---RKN 174 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~---rrn 174 (282)
.++..+|..|...|+.++|++.|.++.+..... ......+.++.+..|++.....++.++-......++.. ...
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIAPED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 345557788888888888888888877665433 35566777777778888888888888877665433322 123
Q ss_pred HHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 175 RLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 175 rLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
......|..+...|+|.+|...|-.++.
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 264 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALV 264 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4555667777788888888888877754
No 68
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.08 E-value=0.11 Score=46.95 Aligned_cols=101 Identities=16% Similarity=0.093 Sum_probs=81.5
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCch------------hHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG------------QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~------------~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
...++..+|..|.+.|++++|+++|.++.+...... .....++++-.+.+..|++.....+..+|-.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356788999999999999999999999988765542 23678888888889999999999999999776
Q ss_pred HhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 164 FEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 164 ~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
-- + ..+.....|..++..++|.+|...|-.++.
T Consensus 226 ~p---~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 226 DS---N---NEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp CT---T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC---C---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 31 1 234455668888999999999999988764
No 69
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.08 E-value=0.085 Score=41.67 Aligned_cols=98 Identities=11% Similarity=-0.060 Sum_probs=76.6
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhH
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnr 175 (282)
--.++..+|..+.+.|++++|++.|.++....... .+..+.+-.+....|++........+|-.+-- .++ .
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~----~ 90 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI--XEP----R 90 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCT----H
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCc----h
Confidence 34567889999999999999999999988765443 34556777777888999999999999877531 233 3
Q ss_pred HHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 176 LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 176 Lkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.....|..++..|+|.+|...|-.++.
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346678899999999999999887754
No 70
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.06 E-value=0.063 Score=47.54 Aligned_cols=133 Identities=13% Similarity=0.079 Sum_probs=92.1
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|..|.+.|+.++|++.|.++.+..... .+...++..+....|++.....+..+|-.+-. .+ ...
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~ 283 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED---YSLWNRLGATLANGDRSEEAVEAYTRALEIQP--GF----IRS 283 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--Cc----hHH
Confidence 3568889999999999999999999998765543 45677888888889999999999998876521 12 334
Q ss_pred HHHHHHHHhhcccHHHHHHHhhccccccc---ccc---ccCchhHHHHHHHHHhccCChHHHHHHccC
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSISTFT---TYE---LFPYDTFIFYTVLTSIISLDRVSLKQKVVD 238 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~tft---~~e---lis~~d~a~Y~~l~aLasl~R~eLk~kvl~ 238 (282)
....|..+...|+|.+|...|-.++.-.. ... ......-+....-.++..+.|.++-.++..
T Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 45567778889999999999988764321 110 011123344444445666788887766653
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.01 E-value=0.1 Score=40.43 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=26.9
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~ 162 (282)
+..+|..|...|+.++|++.|.++.+..... .+..+.+.++.+..|++.....+..++-.
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 104 (186)
T 3as5_A 45 ALHLGIAYVKTGAVDRGTELLERSLADAPDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAE 104 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4444555555555555555555544432221 23334444444444555544444444443
No 72
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.99 E-value=0.092 Score=42.24 Aligned_cols=100 Identities=14% Similarity=0.042 Sum_probs=70.3
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHc-cChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY-MDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~-~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
.++..+|..|...|+.++|++.|.++.+..... .+....+.++.+.. |++.....+..++-. . ++.......
T Consensus 43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~~~~ 115 (225)
T 2vq2_A 43 LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA---D-PTYPTPYIA 115 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT---S-TTCSCHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc---C-cCCcchHHH
Confidence 367778888888888888888888887655433 34566777777788 888888888888776 1 111122344
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
....|......|++.+|...|-.++...
T Consensus 116 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 143 (225)
T 2vq2_A 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQ 143 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4556777778888888888887765443
No 73
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.97 E-value=0.11 Score=37.78 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=71.1
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..+.+.|+.++|.+.|.++....... ....+.+..+....|++.....++.++-.... .+ ....
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~ 106 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RS----AEAW 106 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TC----HHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CC----hHHH
Confidence 457778999999999999999999988765433 34567777888888999999888888876531 11 2233
Q ss_pred HHHHHHHhhcccHHHHHHHhhccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
...|......|++.+|...|-.++
T Consensus 107 ~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 107 YNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 345666778999999998887664
No 74
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.93 E-value=0.079 Score=42.07 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=74.2
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHH-HHHccCh--HHHHHHHHHHHHHHhhCCCcchhh
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQL-GFFYMDF--DLISKSIDKAKSLFEEGGDWERKN 174 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv-~~~~~d~--~~v~~~i~kA~~~~e~ggdw~rrn 174 (282)
.++..+|..|...|++++|+++|.++....... .+..+.+..+ .+..|++ .....++.++-..-- .+ .
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p--~~----~ 115 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---AELYAALATVLYYQASQHMTAQTRAMIDKALALDS--NE----I 115 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT--TC----H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC--Cc----H
Confidence 478889999999999999999999998766543 4455666666 5567887 888888888766521 12 2
Q ss_pred HHHHHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 175 RLKVYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 175 rLkvy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
......|...+..|+|.+|...|-.++...
T Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 116 TALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 344566778889999999999998876543
No 75
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.92 E-value=0.12 Score=39.96 Aligned_cols=97 Identities=10% Similarity=-0.073 Sum_probs=74.8
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-.++..+|..+.+.|++++|++.|.++....... .+.++.+-.+....|++........+|-.+-- .++ ..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~ 88 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALMDI--NEP----RF 88 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCT----HH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCc----HH
Confidence 4567889999999999999999999988654433 35566777777788999999999998877532 233 23
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
....|..++..|+|.+|...|-.++.
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46678888999999999998877653
No 76
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.90 E-value=0.23 Score=46.80 Aligned_cols=95 Identities=11% Similarity=0.085 Sum_probs=48.4
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..|.+.|+.++|++.|.++.+..... ......++.+....|++........++...-. .+... -
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~----~ 478 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT---HLPYLFLGMQHMQLGNILLANEYLQSSYALFQ--YDPLL----L 478 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--CCHHH----H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHH----H
Confidence 355666666666666666666666655433221 23344455555555666666666665544311 12211 2
Q ss_pred HHHHHHHhhcccHHHHHHHhhccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
...|..+...|++++|.+.|-.++
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 233444445555555555555543
No 77
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.90 E-value=0.23 Score=41.44 Aligned_cols=95 Identities=11% Similarity=-0.060 Sum_probs=54.7
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..|.+.|++++|++.|.++.+..... .+....+..+-+..|++.....+..++-.+.. .+.. ..
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~----~~ 148 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPF----RS 148 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH----HH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChH----HH
Confidence 456667777777777777777777766644322 34555666666666777777777766655421 1111 11
Q ss_pred HHHHHHHhhcccHHHHHHHhhcccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
...++. +..+++.+|...|-.++.
T Consensus 149 ~~~~~~-~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 149 LWLYLA-EQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHH-HHHHCHHHHHHHHHHHHH
T ss_pred HHHHHH-HHhcCHHHHHHHHHHHHh
Confidence 122222 445777777777655543
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.86 E-value=0.16 Score=41.82 Aligned_cols=100 Identities=9% Similarity=-0.031 Sum_probs=78.4
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcch---hh
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER---KN 174 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~r---rn 174 (282)
.++..+|..|.+.|++++|++.|.++.+.... ..+..+.+-.+-...|++.....+..+|-..-. .+... ..
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~ 117 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP--GNATIEKLYA 117 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHH
Confidence 35666999999999999999999999875543 456778888888889999999999998877542 22222 22
Q ss_pred HHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 175 RLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 175 rLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
......|...+..|+|.+|...|-.++.
T Consensus 118 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 118 IYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 3455668888899999999999988876
No 79
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.83 E-value=0.081 Score=50.06 Aligned_cols=101 Identities=14% Similarity=0.018 Sum_probs=81.7
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCc------------hhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV------------GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~------------~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
...++..+|..|++.|+++.|++.|.++.+..... ......++++-.+.+..+++.....+.++|-.+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 35568889999999999999999999998866543 234677888888888999999999999999775
Q ss_pred HhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 164 FEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 164 ~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
-. + ..+.....|..++..++|.+|...|-.++.
T Consensus 347 ~p---~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 347 DS---A---NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp ST---T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CC---c---cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 32 1 234455668888999999999999988865
No 80
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.81 E-value=0.086 Score=38.58 Aligned_cols=73 Identities=10% Similarity=-0.053 Sum_probs=59.2
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchh
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 173 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rr 173 (282)
.++..+|..|.+.|++++|++.|.++.+..... .+.++.+-.+-...|++........+|-.+....++....
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDY---VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 468889999999999999999999998765443 3467777788888999999999999998887655554443
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.81 E-value=0.16 Score=39.21 Aligned_cols=96 Identities=14% Similarity=0.031 Sum_probs=75.7
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|..|...|+.++|.+.|.++.+..... ....+.+.++....|++.....++.++-.... .+ ...
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~ 146 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLRP--NE----GKV 146 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc--cc----hHH
Confidence 4568889999999999999999999988765443 35677888888889999999999998876531 11 334
Q ss_pred HHHHHHHHhhcccHHHHHHHhhccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
....|......|++.+|...|-.++
T Consensus 147 ~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 147 HRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777788999999999887764
No 82
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.78 E-value=0.14 Score=39.31 Aligned_cols=99 Identities=12% Similarity=0.006 Sum_probs=72.8
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|..|.+.|++++|++.|.++.+..... .+.++.+..+-...|++.....+..++-..-. .++. ...
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~--~~~ 119 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKD--AKM 119 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHH--HHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHH--HHH
Confidence 3567889999999999999999999988765433 45667777788888999999999999877532 2222 222
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
....|...+..++|.+|...+-....
T Consensus 120 ~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 120 KYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccchHH
Confidence 23334446678999999888876543
No 83
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.74 E-value=0.22 Score=41.30 Aligned_cols=106 Identities=14% Similarity=0.043 Sum_probs=78.9
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCc------hh---HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhC
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV------GQ---KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG 167 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~------~~---~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~g 167 (282)
...+..+|.-+.+.|++++|+++|.++.++..+. .+ ....+.+.-.+-.-.|++.......++|=.+....
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4557889999999999999999999999988762 11 23367777777778899999999999998763221
Q ss_pred CCcch-hhHHH----HHHHHHHhhcccHHHHHHHhhcccc
Q 023407 168 GDWER-KNRLK----VYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 168 gdw~r-rnrLk----vy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
|.-+. ..+.- .-.|..+...|+|.+|...|-.++.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 21111 12223 4468999999999999999987754
No 84
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.66 E-value=0.097 Score=48.31 Aligned_cols=100 Identities=8% Similarity=-0.044 Sum_probs=79.3
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccC-------------chhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVA-------------VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s-------------~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
..++..+|..+.+.|++++|++.|.++.+++.. .......++++-.+.+..+++.....+.++|-.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 445888999999999999999999999875432 3345677888888888899999999999888764
Q ss_pred HhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 164 FEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 164 ~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
- .+ ..+.....|..++..++|.+|...|-.++.
T Consensus 303 ~---p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 303 D---PS---NTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp C---TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C---ch---hHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 11 244556678888899999999999888764
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.64 E-value=0.14 Score=42.27 Aligned_cols=99 Identities=7% Similarity=-0.095 Sum_probs=77.3
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..|.+.|++++|++.|.++.+....... ...+.+-.+.+..|++.....+..+|-..- .+ .....
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~---~~~~~ 79 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS--VTAYNCGVCADNIKKYKEAADYFDIAIKKN---YN---LANAY 79 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CS---HHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC---cc---hHHHH
Confidence 57889999999999999999999999987642222 456667777888899999999999887542 11 23445
Q ss_pred HHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
...|..+...|+|.+|...|-.++...
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 567888889999999999998886543
No 86
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=95.59 E-value=0.16 Score=43.29 Aligned_cols=97 Identities=10% Similarity=-0.040 Sum_probs=68.5
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|..|.+.|+.++|++.|.++.+..... .+....+.++....|++.....+..++-.... .++...
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~--- 243 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD---AQLWNKLGATLANGNRPQEALDAYNRALDINP--GYVRVM--- 243 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHH---
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHH---
Confidence 3567888888888888888888888887665433 35566777777778888888888888766532 233322
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
...|...+..|+|.+|.+.|-.++.
T Consensus 244 -~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 244 -YNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456667778888888887776643
No 87
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.56 E-value=0.21 Score=48.36 Aligned_cols=121 Identities=12% Similarity=0.007 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhhCHH--HHHHHHHhhhhHHHHhCCHHHHHHHHHHhh---ccccCchh--HHHHHHHHHHHHHHccChHH
Q 023407 80 LDDRIADAEENLGES--EVREAHLAKSLFYIQIGDKEKALEQLKVTE---SKTVAVGQ--KMDLVFYTLQLGFFYMDFDL 152 (282)
Q Consensus 80 Le~~lk~~~~nl~~e--eIr~a~~~la~~~~~iGd~~~A~k~y~~~~---e~~~s~~~--~id~~l~~irv~~~~~d~~~ 152 (282)
++.-|+..+.-+|++ ++...+..+|..|...|++++|...|.++. +..-+..| ......++-.+-...|+++.
T Consensus 332 ~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~e 411 (490)
T 3n71_A 332 CRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEV 411 (490)
T ss_dssp HHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHH
Confidence 445556666777775 577789999999999999999999999955 44556665 55556677777777899999
Q ss_pred HHHHHHHHHHHHhh--CCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcc
Q 023407 153 ISKSIDKAKSLFEE--GGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 153 v~~~i~kA~~~~e~--ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~ 200 (282)
...+..+|-.+.+. |.|=-.-..+..-.+-..+..|.|+.|-..+-.+
T Consensus 412 A~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 412 GHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998876 5443334556666677777888888888777443
No 88
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.55 E-value=0.96 Score=39.68 Aligned_cols=97 Identities=9% Similarity=0.016 Sum_probs=56.9
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchh-HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ-KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~-~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
.++..+|..|.+.|+.++|.+.|.++.+.. +.+ ...+...++.+..-.|++.......+++-.. .++ ...+
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~---~~~~ 202 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSP---TLLL 202 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCC---CHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCC---cHHH
Confidence 356667777777777777777777766543 222 2233333444444345555555555554433 111 1234
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
-...|..++..|+|.+|-..|-.++.
T Consensus 203 ~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 203 LNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777888888888888887765
No 89
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.55 E-value=0.11 Score=42.60 Aligned_cols=98 Identities=14% Similarity=0.072 Sum_probs=77.0
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|..|.+.|+.++|++.|.++.+..... .+..+.+.++.+..|++.....+..++-.... .+ ...
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~ 161 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE--ND----TEA 161 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT--TC----HHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--cc----HHH
Confidence 4678889999999999999999999988766543 35677788888889999999999988876532 12 234
Q ss_pred HHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
....|...+..|+|.+|...|-.++..
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 162 RFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456677788899999999998887653
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.52 E-value=0.66 Score=38.56 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=71.7
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|.-+.+.|++++|++.|.++.+........-+..+.+..+-+..|++.......+++-..- .+......-.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---P~~~~~~~a~ 81 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCCcHHHHH
Confidence 3567788889999999999999999887655555556777888888888899888887777765532 1211111111
Q ss_pred HHHHHHHh------------------hcccHHHHHHHhhccccccc
Q 023407 178 VYEGLYCM------------------STRNFKKAASLFLDSISTFT 205 (282)
Q Consensus 178 vy~gL~~l------------------~~r~f~~AA~lfld~~~tft 205 (282)
...|.... ..+++.+|...|-.++..++
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 22232222 36899999999988877665
No 91
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.13 Score=46.57 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=76.5
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHH--HHHHHHHHHHHH---ccChHHHHHHHHHHHHHHhhCCCcchh
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKM--DLVFYTLQLGFF---YMDFDLISKSIDKAKSLFEEGGDWERK 173 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~i--d~~l~~irv~~~---~~d~~~v~~~i~kA~~~~e~ggdw~rr 173 (282)
++..+|..|.+.|++++|.+.|.+++......+..- -++.+. +|.+ .|++.....+..++-......++.-.+
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTL--IEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK 134 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHH--HHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence 467899999999999999999999988765544322 223332 3443 367888888888887766665555556
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 174 NRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 174 nrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
.++....|-.....|+|.+|...+-++...
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 777777788888999999999998887543
No 92
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.44 E-value=0.32 Score=38.50 Aligned_cols=97 Identities=20% Similarity=0.129 Sum_probs=70.6
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|..|.+.|+.++|++.+.++........ ......-.+....+++........+|..... .++ ..
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~--~~~----~~ 109 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA---EAYYILGSANFMIDEKQAAIDALQRAIALNT--VYA----DA 109 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cch----HH
Confidence 35788889999999999999999988876655443 3445555666777888888888888876532 222 23
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
....|......|+|.+|.+.|-.++.
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 110 YYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 35567788888999999888877654
No 93
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.42 E-value=0.19 Score=45.41 Aligned_cols=102 Identities=12% Similarity=-0.020 Sum_probs=51.5
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHH---------HHHHHHHHHccChHHHHHHHHHHHHHHhhCCC
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLV---------FYTLQLGFFYMDFDLISKSIDKAKSLFEEGGD 169 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~---------l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggd 169 (282)
++..+|..|.+.|+.++|++.|.++.+............ +....+.+..|++.....+..++-... ..+
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~ 290 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSI 290 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Ccc
Confidence 455556666666666666666666554433332222211 223444455555555555555554421 112
Q ss_pred cchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 170 WERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 170 w~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
...........|......|+|.+|...|-.++.
T Consensus 291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222233444455566667777777776666543
No 94
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.37 E-value=0.25 Score=39.93 Aligned_cols=94 Identities=9% Similarity=0.071 Sum_probs=74.4
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
.+..+|..+.+.|++++|++.|.++.+. ..+..+++-.+.+..|++.....+..+|-..-. .+ .....
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~----~~~~~ 75 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDP------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HL----AVAYF 75 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cc----hHHHH
Confidence 4778999999999999999999998643 235778888888889999999999999877531 12 23345
Q ss_pred HHHHHHhhcccHHHHHHHhhcccccc
Q 023407 179 YEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 179 y~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
..|..++..|+|.+|...|-.++...
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQL 101 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 56788888999999999998876544
No 95
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.36 E-value=0.22 Score=40.62 Aligned_cols=98 Identities=9% Similarity=-0.027 Sum_probs=77.5
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|..|.+.|+.++|++.|.++.+.... ..+....+.++....|++.....+..++-.... .+ ...
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~ 127 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSS---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM--EN----GDL 127 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--CS----HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CC----HHH
Confidence 356788999999999999999999998876543 246677888888899999999999999877542 12 234
Q ss_pred HHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
....|...+..++|.+|...|-.++..
T Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 128 FYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 455677788999999999999887653
No 96
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.32 E-value=0.29 Score=42.07 Aligned_cols=102 Identities=13% Similarity=0.175 Sum_probs=62.8
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCC-cchhhHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGD-WERKNRL 176 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggd-w~rrnrL 176 (282)
.++..+|..|.+.|+.++|++.|.++.+..... .+..+.+.++.+..|++......+.++-.......+ |..-.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLKSDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 567778888888888888888888877654332 356677777777778888887777777654321110 1111111
Q ss_pred -----HHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 177 -----KVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 177 -----kvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
....|...+..|+|.+|...|-.++.
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22335555666666666666665544
No 97
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.18 E-value=0.26 Score=43.08 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=76.2
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
...+..+|..|.+.|++++|++.|.++.+..... .+....+.++....|++.....+..++-.+-. .+ ...
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~----~~~ 287 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---YLLWNKLGATLANGNQSEEAVAAYRRALELQP--GY----IRS 287 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc----HHH
Confidence 4568889999999999999999999988765433 45677888888889999999999999876521 11 233
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
....|..+...|+|.+|...|-.++.
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45567778889999999999988754
No 98
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.09 E-value=0.16 Score=37.50 Aligned_cols=67 Identities=7% Similarity=-0.111 Sum_probs=57.7
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
..++..+|..|.+.|++++|++.|.++.+.........+..+.+-++-...|++.....+..++-..
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3678889999999999999999999998877666666778888888888999999999999888664
No 99
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.09 E-value=0.31 Score=41.60 Aligned_cols=100 Identities=13% Similarity=-0.005 Sum_probs=78.8
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCc------hhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCc
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV------GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDW 170 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~------~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw 170 (282)
-.++..+|..|.+.|+.++|++.|.++.+..... ....+...++..+....|++.....+..++-..-. .
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~-- 268 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP--Q-- 268 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--T--
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc--c--
Confidence 3568889999999999999999999988764221 23356778888888899999999999999977632 1
Q ss_pred chhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 171 ERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 171 ~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
........|..+...|++.+|...|-.++.
T Consensus 269 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 269 --NASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp --CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred --chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 233445567788889999999999998875
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.05 E-value=0.53 Score=39.15 Aligned_cols=107 Identities=7% Similarity=-0.020 Sum_probs=66.9
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHH------------------ccChHHHHHHH
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF------------------YMDFDLISKSI 157 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~------------------~~d~~~v~~~i 157 (282)
...++..+|.-|.+.|++++|++.|.+..+........-+..+.+-.+-.. .|++.......
T Consensus 40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 119 (225)
T 2yhc_A 40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF 119 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence 356899999999999999999999999887655544333333332222221 23344333333
Q ss_pred HHHHHHHhhCCC----cchhhHH----------HHHHHHHHhhcccHHHHHHHhhccccccc
Q 023407 158 DKAKSLFEEGGD----WERKNRL----------KVYEGLYCMSTRNFKKAASLFLDSISTFT 205 (282)
Q Consensus 158 ~kA~~~~e~ggd----w~rrnrL----------kvy~gL~~l~~r~f~~AA~lfld~~~tft 205 (282)
.++ ++.-.+ |+.+.++ ....|...+..|+|.+|...|-.++..++
T Consensus 120 ~~~---l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 178 (225)
T 2yhc_A 120 SKL---VRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP 178 (225)
T ss_dssp HHH---HTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHH---HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc
Confidence 333 332121 1212121 14567888899999999999998887664
No 101
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.01 E-value=0.17 Score=44.26 Aligned_cols=96 Identities=7% Similarity=-0.072 Sum_probs=75.4
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..+.+.|++++|++.|.++....... .+...++-.+.+..|++........+|-.+-- .+ .+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~ 75 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDG--QS----VKAH 75 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TC----HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CC----HHHH
Confidence 467889999999999999999999988765432 45667777778888999999999888876521 22 3445
Q ss_pred HHHHHHHhhcccHHHHHHHhhcccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
...|..++..|+|.+|...|-.++.
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5678888899999999999987753
No 102
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.27 Score=44.96 Aligned_cols=98 Identities=10% Similarity=-0.075 Sum_probs=77.3
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchh
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 173 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rr 173 (282)
.+--.++..+|..+.+.|++++|++.|.++.+.... ....+.+.++.+..|++......++++-..- .++
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~--- 72 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED----PVFYSNLSACYVSVGDLKKVVEMSTKALELK---PDY--- 72 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---SCC---
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---hHH---
Confidence 344567899999999999999999999999886642 5677888888888999999999999887642 221
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHhhccc
Q 023407 174 NRLKVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 174 nrLkvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
...-...|..+...|+|.+|...|-.++
T Consensus 73 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 73 SKVLLRRASANEGLGKFADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2334456777888999999999887664
No 103
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=94.95 E-value=0.6 Score=39.69 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=67.7
Q ss_pred HHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHh
Q 023407 106 FYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCM 185 (282)
Q Consensus 106 ~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l 185 (282)
.+...|+.++|++.|.++.+..... .+....+.++....|++.....++.++-.... .+ .......|....
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~ 217 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPND---AQLHASLGVLYNLSNNYDSAAANLRRAVELRP--DD----AQLWNKLGATLA 217 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHH
Confidence 4778899999999999988766542 46677788888889999999999998876531 11 233455677777
Q ss_pred hcccHHHHHHHhhccccc
Q 023407 186 STRNFKKAASLFLDSIST 203 (282)
Q Consensus 186 ~~r~f~~AA~lfld~~~t 203 (282)
..|++.+|...|-.++..
T Consensus 218 ~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc
Confidence 899999999998887543
No 104
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.88 E-value=0.35 Score=36.63 Aligned_cols=94 Identities=10% Similarity=-0.046 Sum_probs=71.5
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 179 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy 179 (282)
+..+|..+.+.|++++|++.|.++....... .+..+.+-++....|++........+|-.+-- .+. .....
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~----~~~~~ 90 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDI----AVHAA 90 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHHH
Confidence 5678999999999999999999988754432 45566777777788999999999888876521 122 23456
Q ss_pred HHHHHhhcccHHHHHHHhhcccc
Q 023407 180 EGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 180 ~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.|..+...|++.+|...|-.++.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888889999999988877653
No 105
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=94.81 E-value=0.18 Score=44.11 Aligned_cols=105 Identities=6% Similarity=-0.160 Sum_probs=79.1
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcc-----
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE----- 171 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~----- 171 (282)
..++..+|..|.+.|+.++|++.|.++.+..... .+....+.++.+..|++.....+..+|-.+.....+..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 327 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY---IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccc
Confidence 3578899999999999999999999998765432 46678888888899999999999999988754322211
Q ss_pred hhhHHHHHHHHHHhhcccHHHHHHHhhcccccc
Q 023407 172 RKNRLKVYEGLYCMSTRNFKKAASLFLDSISTF 204 (282)
Q Consensus 172 rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tf 204 (282)
.....-...|..+...|++..|...+-..+..|
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 124455556777778899999888877665544
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.74 E-value=0.087 Score=41.55 Aligned_cols=106 Identities=18% Similarity=0.142 Sum_probs=75.6
Q ss_pred hhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHH
Q 023407 102 AKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEG 181 (282)
Q Consensus 102 ~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~g 181 (282)
.||..+.+.||.++|++.|.++.. .....-...+.+-++-+..|+++....+..+|-.+-- .+ .......|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~~----~~a~~~lg 72 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--RD----PKAHRFLG 72 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHH
Confidence 368888899999999999999875 3334445678888999999999999999999977531 22 23345567
Q ss_pred HHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHH
Q 023407 182 LYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTS 223 (282)
Q Consensus 182 L~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~a 223 (282)
......++|.+|...|-.++. +.|++.-.|..++.
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~la~ 107 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVE-------LNPTQKDLVLKIAE 107 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHHH-------hCCCCHHHHHHHHH
Confidence 888899999999999988865 34455555555443
No 107
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.71 E-value=0.1 Score=38.86 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~ 162 (282)
.+--.++..+|..|.+.|++++|++.|.++.+..... .+..+.+-.+-...|++.....++.++-.
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---QALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555566666666666666666666655443322 33444444444455555555555555543
No 108
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.69 E-value=0.35 Score=45.52 Aligned_cols=103 Identities=12% Similarity=-0.039 Sum_probs=77.3
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh-CCCcchhhH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE-GGDWERKNR 175 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~-ggdw~rrnr 175 (282)
..++..+|..|.+.|+.++|++.|.++.+........ +..++.+....|+++.....+.++-..... |.+++....
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL---LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 3567889999999999999999999988765543332 456777777889999999999998776543 445544344
Q ss_pred HHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 176 LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 176 Lkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.-...|-.+...|++.+|.+.|-.++.
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555566677788999999988877654
No 109
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=94.65 E-value=0.33 Score=43.85 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=74.5
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-.++..+|..|.+.|++++|++.|.++.+..... ....+.+..+.+..|++........++-..- .+ ....
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~---~~~~ 96 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIQLK---MD---FTAA 96 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT---CHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CC---cHHH
Confidence 4567889999999999999999999988764433 6677788888888899999998888886652 11 1233
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
....|..+...|+|.+|...|-.++.
T Consensus 97 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 97 RLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44556777889999999998887754
No 110
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.62 E-value=0.33 Score=35.60 Aligned_cols=70 Identities=10% Similarity=-0.087 Sum_probs=56.3
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCC
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGD 169 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggd 169 (282)
..++..+|..|.+.|++++|++.|.++.+..... .+..+.+-.+....|++.....+..+|-.+....++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence 3578899999999999999999999988765433 445677777788889999999999999887654344
No 111
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.58 E-value=0.26 Score=33.88 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=52.7
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
-.++..+|..|.+.|++++|++.|.++.+..... .+..+.+-.+-+..|++.....+..++-..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4578889999999999999999999998765433 356677777778889999999988888765
No 112
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.56 E-value=0.12 Score=46.64 Aligned_cols=99 Identities=8% Similarity=-0.085 Sum_probs=77.1
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchh--------------HHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ--------------KMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~--------------~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
..+..+|..|.+.|++++|+++|.++......... +...++++-.+.+..|+|.....+..+|-.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44778999999999999999999998876544220 1246777777788889999999999988765
Q ss_pred HhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 164 FEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 164 ~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
- .+ ..+.....|..++..++|.+|...|-.++.
T Consensus 260 ~---p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 260 E---EK---NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp C---TT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred C---CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11 234556678889999999999999988865
No 113
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.51 E-value=0.6 Score=38.73 Aligned_cols=96 Identities=7% Similarity=-0.035 Sum_probs=72.4
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..+.+.|++++|+..|.++.+..... .+..+.+-.+....|++........+|-.+-- .+.+ ..
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~----a~ 76 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQD---PEALYWLARTQLKLGLVNPALENGKTLVARTP--RYLG----GY 76 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH----HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHH----HH
Confidence 367889999999999999999999998755433 45667777777888999999998888876531 2222 22
Q ss_pred HHHHHHHhhc-----------ccHHHHHHHhhcccc
Q 023407 178 VYEGLYCMST-----------RNFKKAASLFLDSIS 202 (282)
Q Consensus 178 vy~gL~~l~~-----------r~f~~AA~lfld~~~ 202 (282)
...|..++.. |+|.+|...|-.++.
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 112 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence 3456666667 999999999888765
No 114
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.34 E-value=0.2 Score=41.77 Aligned_cols=94 Identities=19% Similarity=0.116 Sum_probs=61.1
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-.++..+|..|.+.|+.++|+++|.++.+-. .-.+..+++-++-...|+++.......+|-..- .++. ..
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~----~~ 187 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALALE----DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDL----DL 187 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCH----HH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCh----HH
Confidence 3578899999999999999999999988765 235667778888888899999999998887652 1222 33
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~ 200 (282)
....|...+..|++.+|...|-.+
T Consensus 188 ~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 188 RVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTC--------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 345577778899999988776543
No 115
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=94.25 E-value=1.1 Score=36.72 Aligned_cols=95 Identities=9% Similarity=0.003 Sum_probs=61.1
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHH----------------HHHHHHHccChHHHHHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFY----------------TLQLGFFYMDFDLISKSIDKAKS 162 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~----------------~irv~~~~~d~~~v~~~i~kA~~ 162 (282)
.+..+|.-+.+.|++++|++.|.++.+..... .+..+. +-.+....|+++.......+|-.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR---TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH---HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45667777888888888888888876543221 223333 55666667788777777777755
Q ss_pred HHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 163 LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 163 ~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
+-- .++ ......|..++..|+|.+|...|-.++.
T Consensus 83 ~~p--~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 83 KAP--NNV----DCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HCT--TCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCC--CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 421 122 2334456677778888888888877754
No 116
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.18 E-value=0.46 Score=41.81 Aligned_cols=95 Identities=7% Similarity=-0.028 Sum_probs=74.8
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
.+..+|..+.+.|++++|++.|.++.+..... .+.+..+.++....|++.....+..+|-.+-. .+ .....
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~ 137 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGD---AEAWQFLGITQAENENEQAAIVALQRCLELQP--NN----LKALM 137 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CC----HHHHH
Confidence 47889999999999999999999998765443 56778888888889999999999998877521 11 23344
Q ss_pred HHHHHHhhcccHHHHHHHhhcccc
Q 023407 179 YEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 179 y~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
..|..+...|+|.+|...|-.++.
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIK 161 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHH
Confidence 556777889999999998887754
No 117
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.23 Score=48.72 Aligned_cols=138 Identities=12% Similarity=0.036 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccC--c
Q 023407 135 DLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFP--Y 212 (282)
Q Consensus 135 d~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis--~ 212 (282)
-+.-.++|..+..++++...+.++|+. .++....+.-..|...|.|--.+.+++|.+|.+.|..++.....+..-. .
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Confidence 355578999999999999999999996 5554445556789999999999999999999999998865443222211 1
Q ss_pred hhHHHHHHHHHhccCChHHHHHHccCChhHHHhhcCCchHHHHHHHHhcCChhHHHHHHHHhhhhh
Q 023407 213 DTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFGEKRSDA 278 (282)
Q Consensus 213 ~d~a~Y~~l~aLasl~R~eLk~kvl~~~e~~~~l~~~P~l~~ll~sfy~~~Y~~~~~~L~~~~~~~ 278 (282)
..+--|.++|.|+.=+=++ +.++..+.++..| .|.. ++..++-.++-..|-..|...+..+
T Consensus 311 ~~a~K~lI~V~LLlG~iP~--r~lf~q~~l~~~L--~pY~-~Lv~Avr~GdL~~F~~~L~~h~~~F 371 (523)
T 4b4t_S 311 QQSNKLHCCIQLLMGDIPE--LSFFHQSNMQKSL--LPYY-HLTKAVKLGDLKKFTSTITKYKQLL 371 (523)
T ss_dssp HHHHHHHHHHHHHHTCCCC--HHHHTTTSCHHHH--HHHH-HHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHhHHhhcCCCCC--hHHhhchhHHHHH--HHHH-HHHHHHHcCCHHHHHHHHHHhccee
Confidence 2334478888876322121 1223334443322 3443 7888999999999999988776554
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=94.15 E-value=0.49 Score=42.71 Aligned_cols=151 Identities=11% Similarity=0.019 Sum_probs=97.5
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
.+..+..|..+.+.|++++|.+.|..... ..+++. ..+..-.+.+..++|+.+..+++++.... |....+-.
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~----d~~~~~~a 173 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPV--AGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP----DKFLAGAA 173 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS----CHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC----CcccHHHH
Confidence 44456678999999999999999988765 456666 66777778899999999999997442221 22234667
Q ss_pred HHHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhccCChHHHHHHccCChhHHHhhcCCchHHHHH
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFL 256 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLasl~R~eLk~kvl~~~e~~~~l~~~P~l~~ll 256 (282)
.++.|..+-..|+|.+|-..|-.+...-. +--.+.|..++-++| |..+.|.+==.. -|+.++...|. .+.-
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~--~P~~~~da~~~~gla-L~~lGr~deA~~-----~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPA--GEACARAIAWYLAMA-RRSQGNESAAVA-----LLEWLQTTHPE-PKVA 244 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTT--TTTTHHHHHHHHHHH-HHHHTCHHHHHH-----HHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCC--CccccHHHHHHHHHH-HHHcCCHHHHHH-----HHHHHHhcCCc-HHHH
Confidence 89999999999999999999988753110 000034555555554 444444332111 24444445555 5555
Q ss_pred HHHhcCCh
Q 023407 257 NSLYDCQY 264 (282)
Q Consensus 257 ~sfy~~~Y 264 (282)
.++.+-.|
T Consensus 245 ~aL~~~~~ 252 (282)
T 4f3v_A 245 AALKDPSY 252 (282)
T ss_dssp HHHHCTTC
T ss_pred HHHhCCCC
Confidence 55555444
No 119
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=94.12 E-value=0.54 Score=38.72 Aligned_cols=60 Identities=15% Similarity=-0.012 Sum_probs=36.2
Q ss_pred HhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 101 LAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 101 ~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
..+|..|.+.|++++|++.|.++.+..... .+..+.+-.+-+..|++........+|-.+
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNN---VDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 346666777777777777777766543322 344555555556666666666666666543
No 120
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=94.09 E-value=0.49 Score=39.31 Aligned_cols=95 Identities=9% Similarity=-0.062 Sum_probs=54.5
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|..|.+.|+.++|++.|.++.+....... ....+.++...|++......+.++-.... .+. .
T Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~-----~ 179 (275)
T 1xnf_A 111 NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF----RSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQ-----W 179 (275)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCS-----T
T ss_pred cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHhcCHHHHHHHHHHHHhcCC--cch-----H
Confidence 456777777777777887787777777765444331 11222334555677666666666554322 111 1
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
....+...+..+++.+|...|..++.
T Consensus 180 ~~~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 180 GWNIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 12344455666777777776666644
No 121
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.07 E-value=0.53 Score=34.89 Aligned_cols=82 Identities=12% Similarity=-0.033 Sum_probs=61.1
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhcccc----CchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTV----AVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~----s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnr 175 (282)
...+|.++++.||+..|+..|.++.+.-. ......++...+-..-+..|++.....+.++|-.+- ..+....+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~n 85 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHhh
Confidence 46899999999999999999999886532 233577888899999999999999999999986642 123223344
Q ss_pred HHHHHHHH
Q 023407 176 LKVYEGLY 183 (282)
Q Consensus 176 Lkvy~gL~ 183 (282)
++.++.+.
T Consensus 86 ~~~~~~~~ 93 (104)
T 2v5f_A 86 LKYFEYIM 93 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555543
No 122
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=94.01 E-value=0.19 Score=35.57 Aligned_cols=65 Identities=11% Similarity=-0.095 Sum_probs=52.8
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHc-cChHHHHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY-MDFDLISKSIDKAKSL 163 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~-~d~~~v~~~i~kA~~~ 163 (282)
.++..+|..|.+.|++++|++.|.++.+.... ....+..+.+.++.+.. |++.....++.++-..
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 35778999999999999999999999876554 22356778888888889 9999998888887543
No 123
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=93.89 E-value=0.29 Score=45.30 Aligned_cols=95 Identities=9% Similarity=-0.051 Sum_probs=74.3
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchh
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 173 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rr 173 (282)
.+...++..+|..+.+.|++++|++.|.++.+..... .+..+.+..+.+..|++........++-.+- .+ .
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~---~ 92 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE---PVFYSNISACYISTGDLEKVIEFTTKALEIK---PD---H 92 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT---C
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---Cc---h
Confidence 3456789999999999999999999999998765433 4677888888888999999999999886652 22 1
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHh
Q 023407 174 NRLKVYEGLYCMSTRNFKKAASLF 197 (282)
Q Consensus 174 nrLkvy~gL~~l~~r~f~~AA~lf 197 (282)
.......|..+...|+|.+|...|
T Consensus 93 ~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 93 SKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 234455677788899999999888
No 124
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=93.83 E-value=0.38 Score=43.95 Aligned_cols=101 Identities=13% Similarity=-0.009 Sum_probs=48.8
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
++..+|..|.+.|+.++|++.|.++.+..... .+....+..+.+..|++.....+..++-......++.........
T Consensus 340 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 340 PYIQLACLAYRENKFDDCETLFSEAKRKFPEA---PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 44455555555555555555555554433221 133444444455555555555555555443322111111122334
Q ss_pred HHHHHHhh---cccHHHHHHHhhcccc
Q 023407 179 YEGLYCMS---TRNFKKAASLFLDSIS 202 (282)
Q Consensus 179 y~gL~~l~---~r~f~~AA~lfld~~~ 202 (282)
..|..++. .|+|.+|...|-.++.
T Consensus 417 ~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 417 GKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 44555555 6777777666666543
No 125
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=93.79 E-value=0.45 Score=35.24 Aligned_cols=90 Identities=9% Similarity=0.071 Sum_probs=69.9
Q ss_pred HhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcc
Q 023407 109 QIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTR 188 (282)
Q Consensus 109 ~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r 188 (282)
..|+.++|++.|.++.+...+.....+..+++-.+-+..|++.....+..+|-..-- .+. ......|..+...|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQ----ALRVFYAMVLYNLG 75 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cch----HHHHHHHHHHHHcC
Confidence 468999999999999987544556778888999999999999999999999977632 343 34567899999999
Q ss_pred cHHHHHHHhhcccccc
Q 023407 189 NFKKAASLFLDSISTF 204 (282)
Q Consensus 189 ~f~~AA~lfld~~~tf 204 (282)
+|.+|...|-.++...
T Consensus 76 ~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 76 RYEQGVELLLKIIAET 91 (117)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999887644
No 126
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=93.77 E-value=0.21 Score=36.25 Aligned_cols=66 Identities=11% Similarity=-0.069 Sum_probs=53.8
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCc-hh---HHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV-GQ---KMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~-~~---~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
.++..+|..|.+.|++++|++.|.++.+..... .. ..++.+.+..+....|++.....+..++-..
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 567889999999999999999999988764322 11 2667788888888899999999999988775
No 127
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=93.66 E-value=0.64 Score=47.08 Aligned_cols=97 Identities=12% Similarity=-0.038 Sum_probs=54.9
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-.++..+|..|.+.|++++|+++|.++.+..... .+...++-.+-...|++.....+.++|-++-- .+. ..
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P--~~~----~a 113 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP--AFA----DA 113 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HH
Confidence 3466666777777777777777776666543222 34455555555566666666666666654321 111 12
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
....|..+...|+|.+|...|-.++.
T Consensus 114 ~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 114 HSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23345555666777777666666543
No 128
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=93.55 E-value=0.69 Score=41.13 Aligned_cols=96 Identities=15% Similarity=0.044 Sum_probs=54.8
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|..|.+.|+.++|++.|.++...... ..+...++..+-...|++........++-..- .+. ...
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~---~~~ 137 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYN---PDL---YCV 137 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC---TTC---THH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc---HHH
Confidence 346777788888888888888888777654322 23445566666666677777766666654431 110 111
Q ss_pred HHHHHHHHhhcccHHHHHHHhhccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
....|..+...|+|.+|.+.|-.++
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 1223444444555555555555443
No 129
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=93.51 E-value=0.69 Score=42.68 Aligned_cols=62 Identities=13% Similarity=0.027 Sum_probs=32.0
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
++..+|..|.+.|+.++|++.|.++.+...... +....+..+.+..|++......+.++-..
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV---YPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555555555555555555555554432221 33444445555555555555555555443
No 130
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.50 E-value=0.74 Score=38.87 Aligned_cols=93 Identities=17% Similarity=0.050 Sum_probs=66.1
Q ss_pred HHHHHhhhhHHHH----hCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHhhCC
Q 023407 97 REAHLAKSLFYIQ----IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEGG 168 (282)
Q Consensus 97 r~a~~~la~~~~~----iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~----~~d~~~v~~~i~kA~~~~e~gg 168 (282)
-.++..+|..|.. .||.++|++.|.++.+.. ..+.+..+-++-.. .+|+.....+..+|-.. +
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~ 108 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K 108 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----C
Confidence 3577888888888 888888888888877652 34566666677777 78888888887777553 2
Q ss_pred CcchhhHHHHHHHHHHhh----cccHHHHHHHhhcccc
Q 023407 169 DWERKNRLKVYEGLYCMS----TRNFKKAASLFLDSIS 202 (282)
Q Consensus 169 dw~rrnrLkvy~gL~~l~----~r~f~~AA~lfld~~~ 202 (282)
+. ......|..... .+++.+|...|-.++.
T Consensus 109 ~~----~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 109 YA----EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp CH----HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred Cc----cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 22 233445556666 8899999888887754
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=93.35 E-value=0.54 Score=33.88 Aligned_cols=64 Identities=11% Similarity=-0.115 Sum_probs=53.8
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
..++..+|..|...|+.++|++.|.++.+..... .+..+.+.++....|++.....++.++-..
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY---SKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3567889999999999999999999988765433 456778888888899999999999998776
No 132
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.28 E-value=0.83 Score=43.07 Aligned_cols=97 Identities=8% Similarity=-0.126 Sum_probs=77.6
Q ss_pred HHHHHHhhhhHHHHhCCH-HHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhh
Q 023407 96 VREAHLAKSLFYIQIGDK-EKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKN 174 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~-~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrn 174 (282)
-..++..+|..|...|++ ++|++.|.++.+..... .+.+..+-.+.+..|++.....+..+|-.+- ++ .
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~--~ 170 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL---VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-----KN--K 170 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-----CC--H
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC--H
Confidence 356789999999999999 99999999998765443 4677788888888899999999998886642 22 3
Q ss_pred HHHHHHHHHHhhc---------ccHHHHHHHhhcccc
Q 023407 175 RLKVYEGLYCMST---------RNFKKAASLFLDSIS 202 (282)
Q Consensus 175 rLkvy~gL~~l~~---------r~f~~AA~lfld~~~ 202 (282)
......|..+... ++|.+|...|-.++.
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 207 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ 207 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH
Confidence 5555667777778 999999999988865
No 133
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=92.91 E-value=1.8 Score=38.30 Aligned_cols=95 Identities=11% Similarity=-0.036 Sum_probs=48.5
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
++..+|..|.+.|+.++|++.|.++.+..... .+...++..+-...|++.......+++-.... .+.+ ...
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~----~~~ 309 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHF---PDAYCNLANALKEKGSVAEAEDCYNTALRLCP--THAD----SLN 309 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT--TCHH----HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHH----HHH
Confidence 44555666666666666666666655432221 23444555555555666666655555544321 1111 112
Q ss_pred HHHHHHhhcccHHHHHHHhhcccc
Q 023407 179 YEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 179 y~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
..|......|++.+|...|-.++.
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 234445556777777666666544
No 134
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.76 E-value=0.84 Score=33.97 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=54.4
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
...++..+|..|.+.|++++|++.|.++.+..... .+..+.+..+....|++.....++.++-.+
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD---VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45678899999999999999999999988764432 566778888888889999999999988765
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.7 Score=34.20 Aligned_cols=64 Identities=6% Similarity=0.007 Sum_probs=54.2
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~ 164 (282)
.++..+|.-|.+.|++++|++.|.++.+..... .+..+.+-.+-...|++.....+..++-.+-
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 678899999999999999999999988765433 4567777788888999999999999997764
No 136
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.68 E-value=1.7 Score=41.23 Aligned_cols=89 Identities=15% Similarity=-0.018 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhhCHH--HHHHHHHhhhhHHHHhCCHHHHHHHHHHhh---ccccCchh--HHHHHHHHHHHHHHccCh
Q 023407 78 KKLDDRIADAEENLGES--EVREAHLAKSLFYIQIGDKEKALEQLKVTE---SKTVAVGQ--KMDLVFYTLQLGFFYMDF 150 (282)
Q Consensus 78 ~~Le~~lk~~~~nl~~e--eIr~a~~~la~~~~~iGd~~~A~k~y~~~~---e~~~s~~~--~id~~l~~irv~~~~~d~ 150 (282)
+-++.-|+..++-+|.+ ++...+..+|.-|...|++++|...|.++. +..-++.| +.....++-.+-...|++
T Consensus 319 ~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~ 398 (433)
T 3qww_A 319 EICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENK 398 (433)
T ss_dssp HHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCH
Confidence 34455556666777775 567779999999999999999999999865 34444443 444556666666777999
Q ss_pred HHHHHHHHHHHHHHhh
Q 023407 151 DLISKSIDKAKSLFEE 166 (282)
Q Consensus 151 ~~v~~~i~kA~~~~e~ 166 (282)
+....+..||-.+.+.
T Consensus 399 ~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 399 AAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888876
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=92.68 E-value=0.79 Score=32.62 Aligned_cols=63 Identities=19% Similarity=0.112 Sum_probs=52.1
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
.++..+|..|.+.|+.++|++.|.++.+..... ....+.+.++....|++.....+..++-..
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 467789999999999999999999988765433 356677888888899999999999888765
No 138
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=92.67 E-value=0.93 Score=43.25 Aligned_cols=98 Identities=7% Similarity=-0.070 Sum_probs=73.6
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-.++..+|..|.+.|+.++|++.|.++.+..... .+..+++-.+-...|++.....+..+|-.+-- .+. ..
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~ 127 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEP----YI 127 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HH
Confidence 5678899999999999999999999988765433 45667777788888999999888888876531 222 23
Q ss_pred HHHHHHHHhhc---ccHHHHHHHhhccccc
Q 023407 177 KVYEGLYCMST---RNFKKAASLFLDSIST 203 (282)
Q Consensus 177 kvy~gL~~l~~---r~f~~AA~lfld~~~t 203 (282)
....|..+... +++.+|...|-.++..
T Consensus 128 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 128 TAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 34456666677 9999999988887643
No 139
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=92.58 E-value=0.56 Score=44.28 Aligned_cols=96 Identities=14% Similarity=-0.097 Sum_probs=70.7
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHc---------cChHHHHHHHHHHHHHHhhC
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY---------MDFDLISKSIDKAKSLFEEG 167 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~---------~d~~~v~~~i~kA~~~~e~g 167 (282)
-.++..+|..|.+.|++++|+++|.++.+.... .+...++-.+-... |++.....+..+|-.+--
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-- 210 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-- 210 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC--
Confidence 458899999999999999999999999987644 26666666666667 777777777777766421
Q ss_pred CCcchhhHHHHHHHHHHhhc--------ccHHHHHHHhhcccc
Q 023407 168 GDWERKNRLKVYEGLYCMST--------RNFKKAASLFLDSIS 202 (282)
Q Consensus 168 gdw~rrnrLkvy~gL~~l~~--------r~f~~AA~lfld~~~ 202 (282)
.++ ......|..++.. ++|.+|...|-.++.
T Consensus 211 ~~~----~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 211 LDG----RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp TCH----HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCH----HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 222 2234455556666 889999999988765
No 140
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=92.49 E-value=0.18 Score=48.15 Aligned_cols=98 Identities=11% Similarity=-0.020 Sum_probs=61.0
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|..|.+.|++++|++.|.++.+..... .....++-.+-...|+++....+..+|-.+-- .+.+....
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~- 113 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDAKMK- 113 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCTTHHHH-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHH-
Confidence 5678888888888888888888888887654332 34556666667777888888888888766521 22222222
Q ss_pred HHHHHHHHhhcccHHHHHHHhhccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
...+...+..++|.+|.+.+-+..
T Consensus 114 -l~~~~~~~~~g~~~~A~~~~~~~~ 137 (477)
T 1wao_1 114 -YQECNKIVKQKAFERAIAGDEHKR 137 (477)
T ss_dssp -HHHHHHHHHHHHHCCC------CC
T ss_pred -HHHHHHHHHHHHHHHHhccccccc
Confidence 222223667788888888776543
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.46 E-value=1.6 Score=33.94 Aligned_cols=65 Identities=14% Similarity=0.003 Sum_probs=55.3
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~ 164 (282)
..++..+|..|.+.|++++|++.|.++.+..... .+.++.+-.+.+..|++.....+..++-.+-
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY---SKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3578899999999999999999999998765443 5667788888888999999999999998765
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=92.16 E-value=1.6 Score=33.27 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=53.7
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e 165 (282)
..++..+|..|.+.|++++|+++|.++....... .+..+++-.+-...|++.....+..+|-.+.-
T Consensus 52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE---PRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3567889999999999999999999988765433 24557777778888999999999999987653
No 143
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=92.07 E-value=1 Score=39.28 Aligned_cols=97 Identities=10% Similarity=-0.071 Sum_probs=64.1
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|.++.+.|+.++|.+.|.++.+....... .++.+..++-...|++....+...+|-...- .+ ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~------~~ 169 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TR------HH 169 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CC------TH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CC------HH
Confidence 46788889999999999999999998874332211 1556666666667787777777777755321 11 33
Q ss_pred HHHHHHHhh---cccHHHHHHHhhcccccc
Q 023407 178 VYEGLYCMS---TRNFKKAASLFLDSISTF 204 (282)
Q Consensus 178 vy~gL~~l~---~r~f~~AA~lfld~~~tf 204 (282)
+|.|...+. .|++++|-..|-.++..+
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~ 199 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKY 199 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455555553 688888888877765433
No 144
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=92.03 E-value=1.4 Score=44.49 Aligned_cols=142 Identities=9% Similarity=-0.041 Sum_probs=92.4
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhcc
Q 023407 48 SFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENL-GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESK 126 (282)
Q Consensus 48 ~~Y~~l~~~~~~~~D~~~~~~~~~~n~~~l~~Le~~lk~~~~nl-~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~ 126 (282)
.+|+..++. -|-+......+ ...-.++.+++..++.++.-+ .+-+--.++..+|..|.+.|++++|+++|.++.+.
T Consensus 30 ~~~~kAl~l--~P~~~~a~~nL-g~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l 106 (723)
T 4gyw_A 30 RLYRKALEV--FPEFAAAHSNL-ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106 (723)
T ss_dssp HHHHHHHHH--CSCCHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466665554 23333222222 233344455555555554321 11233578999999999999999999999998876
Q ss_pred ccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccc
Q 023407 127 TVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 127 ~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
.... .+...++-.+-...|++.....+..+|-++- ..+.+ .....|..+...++|.+|.+.|-.++
T Consensus 107 ~P~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~----a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 107 NPAF---ADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPD----AYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHH----HHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChH----HHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 4332 4667788888888899999999988887652 12222 23445666778899999888776654
No 145
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=91.87 E-value=0.97 Score=34.38 Aligned_cols=64 Identities=5% Similarity=-0.013 Sum_probs=52.9
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
-.++..+|.-|.+.|+.++|++.|.++.+..... .+..+++-.+-...|++........+|-.+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF---IKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4578889999999999999999999988764433 456677777788889999999999988775
No 146
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=91.85 E-value=0.9 Score=39.87 Aligned_cols=155 Identities=14% Similarity=0.145 Sum_probs=96.6
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..|.+.|+.++|++.|.+ +.-.+..+.+.++-+..|+++...+.+.++...- .|. . ...
T Consensus 102 ~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~-~--~~~ 167 (291)
T 3mkr_A 102 TFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD---EDA-T--LTQ 167 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-H--HHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cCc-H--HHH
Confidence 4688999999999999999999988 2446788889999999999999999999987652 221 1 222
Q ss_pred HHHHHHHh--hcccHHHHHHHhhccccccccccccCchhHHHHH-HHHHhccCChHHHHHHccCChhHHHhhcCCch---
Q 023407 178 VYEGLYCM--STRNFKKAASLFLDSISTFTTYELFPYDTFIFYT-VLTSIISLDRVSLKQKVVDAPEILTVIGKIPY--- 251 (282)
Q Consensus 178 vy~gL~~l--~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~-~l~aLasl~R~eLk~kvl~~~e~~~~l~~~P~--- 251 (282)
...|...+ ..+++.+|...|-..+..++ .+...|. .-.++..+.|.+-=.. .++..+...|.
T Consensus 168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-------~~~~~~~~la~~~~~~g~~~eA~~-----~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 168 LATAWVSLAAGGEKLQDAYYIFQEMADKCS-------PTLLLLNGQAACHMAQGRWEAAEG-----VLQEALDKDSGHPE 235 (291)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-------CCHHHHHHHHHHHHHTTCHHHHHH-----HHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHhCCCCHH
Confidence 33343333 45899999999988876433 2333333 3334444454432222 23333343342
Q ss_pred -HHHHHH-HHhcCChh----HHHHHHHHhhhhh
Q 023407 252 -LSEFLN-SLYDCQYK----SFFSAFGEKRSDA 278 (282)
Q Consensus 252 -l~~ll~-sfy~~~Y~----~~~~~L~~~~~~~ 278 (282)
+..+.. ....+++. .+++.+.++.|+.
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 233332 23455663 3555566666654
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=91.78 E-value=1 Score=31.77 Aligned_cols=64 Identities=16% Similarity=-0.008 Sum_probs=51.9
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
..++..+|..|.+.|+.++|++.|.++.+..... .+..+.+..+....|++.....+..++-..
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---GKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 4568889999999999999999999988765443 356677777888889999998888888654
No 148
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=91.32 E-value=0.66 Score=40.56 Aligned_cols=102 Identities=8% Similarity=-0.028 Sum_probs=70.3
Q ss_pred HHHhhhhHHHH-hCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 99 AHLAKSLFYIQ-IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 99 a~~~la~~~~~-iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.+...|..... .|+.+.|.++|.++.+.+... .++++..+.+-...|+...+....++|-.... .+.+....+-
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~--l~p~~~~~l~ 244 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS--LPPEKSGEIW 244 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS--SCGGGCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC--CCHHHHHHHH
Confidence 45555655443 699999999999998876543 57778888888888999999999999977421 1222233333
Q ss_pred HHHHHHHhhcccHHHHHHHhhccccccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSISTFT 205 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~tft 205 (282)
...+-+....|++..|...+-..+..+.
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 3344445567888888888777655553
No 149
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=91.25 E-value=1.3 Score=40.36 Aligned_cols=105 Identities=13% Similarity=0.120 Sum_probs=80.5
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcch-hhHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER-KNRLK 177 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~r-rnrLk 177 (282)
++.-+|..|...||.++|++.+.+..+... ....++.....+++.+..|+.+...+.+.+..+..+. ..|.. .-.+.
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d-~~~~~d~~l~~ 179 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED-TVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-ccccchHHHHH
Confidence 346789999999999999999999866443 2578999999999999999999999999998775420 01443 45667
Q ss_pred HHHHHHHhhcc--cHHHHHHHhhccccccc
Q 023407 178 VYEGLYCMSTR--NFKKAASLFLDSISTFT 205 (282)
Q Consensus 178 vy~gL~~l~~r--~f~~AA~lfld~~~tft 205 (282)
..+|...+..| ++..|-..|=+....|+
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p 209 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFP 209 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence 77776677666 88888887777655554
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=91.25 E-value=1 Score=33.40 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=54.9
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e 165 (282)
..++..+|..|.+.|+++.|++.|.++...... .....+.+-.+.+..|++.....+..+|-.+-.
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 43 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 357889999999999999999999998876543 345677778888889999999999999977653
No 151
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=91.19 E-value=2.1 Score=35.93 Aligned_cols=94 Identities=15% Similarity=0.016 Sum_probs=71.9
Q ss_pred HHHHHHhhhhHHHH----hCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHhhC
Q 023407 96 VREAHLAKSLFYIQ----IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEG 167 (282)
Q Consensus 96 Ir~a~~~la~~~~~----iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~----~~d~~~v~~~i~kA~~~~e~g 167 (282)
--.++..+|..|.+ .||.++|++.|.++.+.. ..+.++++-.+-.. .+|+.....+..+|-..
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~---- 143 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---- 143 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----
Confidence 45789999999999 999999999999988752 34566666666667 88999988888888653
Q ss_pred CCcchhhHHHHHHHHHHhh----cccHHHHHHHhhcccc
Q 023407 168 GDWERKNRLKVYEGLYCMS----TRNFKKAASLFLDSIS 202 (282)
Q Consensus 168 gdw~rrnrLkvy~gL~~l~----~r~f~~AA~lfld~~~ 202 (282)
++. ......|..... .+++.+|...|-.++.
T Consensus 144 ~~~----~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 178 (273)
T 1ouv_A 144 NDG----DGCTILGSLYDAGRGTPKDLKKALASYDKACD 178 (273)
T ss_dssp TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CcH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 232 223445666666 8999999999988764
No 152
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=91.08 E-value=1.6 Score=37.92 Aligned_cols=103 Identities=10% Similarity=-0.007 Sum_probs=69.1
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH--------------
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL-------------- 163 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~-------------- 163 (282)
.++..+|.-+.+.|+.++|+..|.++.+..... .+..+.+.++.+..|+++.....+.++-..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 456778888888888888888888877654433 356677777888888888777777765321
Q ss_pred -HhhCCCcc-------------hhhHHHHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 164 -FEEGGDWE-------------RKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 164 -~e~ggdw~-------------rrnrLkvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
...|..-+ .........|..++..|++.+|...|..++..
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 11111100 01234455577788899999999999888653
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=91.01 E-value=0.82 Score=33.25 Aligned_cols=63 Identities=11% Similarity=-0.040 Sum_probs=51.7
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
.++..+|..|.+.|+.++|++.|.++.+.... .....+.+..+....|++.....+..++-..
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPT---FIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 56778999999999999999999998876443 2456677777888889999999999988765
No 154
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=90.84 E-value=2.5 Score=32.83 Aligned_cols=66 Identities=9% Similarity=0.030 Sum_probs=53.7
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e 165 (282)
-.++..+|.-|.+.|++++|+++|.++....... .+..+++-.+-+..|++.....+..+|-.+..
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE---PRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3567889999999999999999999988754332 34567777788889999999999999987653
No 155
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=90.73 E-value=1.9 Score=41.14 Aligned_cols=62 Identities=13% Similarity=-0.022 Sum_probs=46.7
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHc---cChHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY---MDFDLISKSIDKAK 161 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~---~d~~~v~~~i~kA~ 161 (282)
..++..+|..|.+.|+.++|++.|.++.+..... .+...++.++.... |++.....++.++-
T Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE---PYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 5688999999999999999999999998765443 35667777777788 55555555555543
No 156
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=90.68 E-value=1.6 Score=34.71 Aligned_cols=65 Identities=11% Similarity=-0.088 Sum_probs=54.1
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~ 164 (282)
..++..+|.-|.+.|++++|+++|.++....... .+..+++-.+-...|+++....+..+|-.+-
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~---~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND---YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC---CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4578999999999999999999999998765443 2456777777778899999999999998764
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=90.57 E-value=4 Score=31.45 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=54.1
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~ 164 (282)
..++..+|.-|.+.|++++|++.+.++.+..... ....+.+-.+-...|++.....++.+|-.+-
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETN---EKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 4578899999999999999999999998765433 4566777777888899999999999988763
No 158
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=90.52 E-value=2.9 Score=37.34 Aligned_cols=91 Identities=12% Similarity=0.043 Sum_probs=67.8
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|..|.+.|++++|+++|.++.+..... ....+++-.+-+..|++.....++.+|-.+-- .+. ..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~----~a 266 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNK----AA 266 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCH----HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCH----HH
Confidence 4678999999999999999999999999875443 45667778888888999999999999977631 121 12
Q ss_pred HHHHHHHHhhcccHHHHHHH
Q 023407 177 KVYEGLYCMSTRNFKKAASL 196 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~l 196 (282)
....|......+++.+|...
T Consensus 267 ~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 267 KTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 23345555567777777443
No 159
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=90.30 E-value=6.8 Score=35.70 Aligned_cols=97 Identities=9% Similarity=-0.016 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcch
Q 023407 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER 172 (282)
Q Consensus 93 ~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~r 172 (282)
+..-..++..+|..|.+.|++++|++.|.++.+.... .....+.+-.+-...|++.....++.+|-.+-- .+.+
T Consensus 269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--~~~~- 342 (370)
T 1ihg_A 269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP--EDKA- 342 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH-
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHH-
Confidence 3445678999999999999999999999999986543 245667777778888999999999999987632 2222
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHhh
Q 023407 173 KNRLKVYEGLYCMSTRNFKKAASLFL 198 (282)
Q Consensus 173 rnrLkvy~gL~~l~~r~f~~AA~lfl 198 (282)
.....+......+++++|.+...
T Consensus 343 ---~~~~l~~~~~~~~~~~~a~k~~~ 365 (370)
T 1ihg_A 343 ---IQAELLKVKQKIKAQKDKEKAAY 365 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334445567777665543
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=89.85 E-value=1.2 Score=33.84 Aligned_cols=77 Identities=9% Similarity=-0.120 Sum_probs=50.1
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCc----hhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcch
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV----GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER 172 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~----~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~r 172 (282)
-.++..+|.-|.+.|++++|++.|.++.+..... ........++=.+-...|++.....+..+|-.. ..|.+.
T Consensus 42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~ 118 (127)
T 4gcn_A 42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE---FRDPEL 118 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCCHHH
T ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCHHH
Confidence 3568889999999999999999999987643221 122233344444445568888888888777442 245554
Q ss_pred hhHH
Q 023407 173 KNRL 176 (282)
Q Consensus 173 rnrL 176 (282)
..+|
T Consensus 119 ~~~l 122 (127)
T 4gcn_A 119 VKKV 122 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 161
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=89.74 E-value=2.1 Score=42.42 Aligned_cols=95 Identities=8% Similarity=-0.103 Sum_probs=59.8
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.++..+|..|.+.|++++|+++|.++.+..... .+..+++-.+....|++.. ..+.++|-.+-- .+ ....
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P--~~----~~a~ 537 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---LAPKLALAATAELAGNTDE-HKFYQTVWSTND--GV----ISAA 537 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT--TC----HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC--ch----HHHH
Confidence 456667777777777777777777766543322 3344455555555666666 666666544321 11 1233
Q ss_pred HHHHHHHhhcccHHHHHHHhhcccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
...|..++..|+|.+|...|-.++.
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 4567778899999999999988865
No 162
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=89.61 E-value=3.5 Score=36.96 Aligned_cols=99 Identities=11% Similarity=-0.060 Sum_probs=78.1
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCC-cchhhHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGD-WERKNRLK 177 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggd-w~rrnrLk 177 (282)
++..+|..+.+.|+++.|++.|.++.... .+...-++.+.+=++.-..|++.....+.++|-. |.. +....-..
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~~P~~~~da~ 211 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND----SPAGEACARAIA 211 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----STTTTTTHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCCCccccHHHH
Confidence 88999999999999999999998765443 2223356777777778889999999999999863 222 44344566
Q ss_pred HHHHHHHhhcccHHHHHHHhhcccc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.+.|+.+...|++.+|...|=.+..
T Consensus 212 ~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 212 WYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999999977654
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=89.20 E-value=1.2 Score=33.47 Aligned_cols=63 Identities=10% Similarity=-0.152 Sum_probs=47.3
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~ 162 (282)
-.++..+|..+.+.|+.++|+++|.++.+..... .+..+.+-.+-...|++......+.++-.
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---IAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578899999999999999999999988765443 24556666666667777777777766644
No 164
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=88.88 E-value=2.4 Score=29.66 Aligned_cols=61 Identities=20% Similarity=0.069 Sum_probs=47.1
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHH-HHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMD-LVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id-~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
...+|..+.+.|++++|++.|.++.+..... .+ ..+.+-.+-+..|++.....+..+|-.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3567888999999999999999988754332 23 5666666777789999998888888765
No 165
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=88.43 E-value=1.5 Score=40.04 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=57.1
Q ss_pred HHHhhhhHHHHh-----CCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHH-ccChHHHHHHHHHHHHHHhhC-CCcc
Q 023407 99 AHLAKSLFYIQI-----GDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF-YMDFDLISKSIDKAKSLFEEG-GDWE 171 (282)
Q Consensus 99 a~~~la~~~~~i-----Gd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~-~~d~~~v~~~i~kA~~~~e~g-gdw~ 171 (282)
+|.-+|-+|.+. ||.++|.++|.++++. ++++.+|.....-+.-.. .+|......++++|-+..-.. .+|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 799999999995 9999999999999985 455557776666665555 499999999999998876542 4454
Q ss_pred h
Q 023407 172 R 172 (282)
Q Consensus 172 r 172 (282)
.
T Consensus 279 l 279 (301)
T 3u64_A 279 L 279 (301)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=88.35 E-value=5 Score=38.59 Aligned_cols=102 Identities=7% Similarity=-0.042 Sum_probs=74.6
Q ss_pred hhhhHHHHhCCHHHHHHHHHHhhc---cccCchh--HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 102 AKSLFYIQIGDKEKALEQLKVTES---KTVAVGQ--KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 102 ~la~~~~~iGd~~~A~k~y~~~~e---~~~s~~~--~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
+.+.-+..-|++++|+..|.++.+ ..-+..| ...+.-++..+....|+|+....+..+|-...++---.+...-.
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 345556688999999999998664 4455555 67778888888889999999999999998877652222233333
Q ss_pred HHH--HHHHHhhcccHHHHHHHhhccccc
Q 023407 177 KVY--EGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 177 kvy--~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
..+ .|..+..+|+|.+|..++-.++..
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 333 355666799999999999988653
No 167
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=88.14 E-value=3.3 Score=32.59 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=59.0
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-.++..+|..|.+.|+.++|++.|.++..... . ......+..+...-..++. .....+.+| ++...+ ....
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~-~~~~~~~~~~~~~~~~~~~-~a~~~~~~a---l~~~P~---~~~~ 110 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATIPLEYQ-D-NSYKSLIAKLELHQQAAES-PELKRLEQE---LAANPD---NFEL 110 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-HHHHHHHHHHHHHHHHTSC-HHHHHHHHH---HHHSTT---CHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-hHHHHHHHHHHHHhhcccc-hHHHHHHHH---HHhCCC---CHHH
Confidence 45788999999999999999999999876544 2 2222222212111111111 112333333 332111 1344
Q ss_pred HHHHHHHHhhcccHHHHHHHhhccccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIST 203 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~t 203 (282)
....|..++..|++.+|...|-.++..
T Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 111 ACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 566788889999999999999887643
No 168
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=88.02 E-value=0.89 Score=41.40 Aligned_cols=103 Identities=9% Similarity=-0.092 Sum_probs=61.3
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHhhCCCcch-----
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGF-FYMDFDLISKSIDKAKSLFEEGGDWER----- 172 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~-~~~d~~~v~~~i~kA~~~~e~ggdw~r----- 172 (282)
++..+|..|.+.|++++|+++|.++.+........-.+.++.-.+.. ..|+++....+..+|-.+-....+|..
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l 415 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL 415 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 46789999999999999999999999877777766666666665554 357888777777776543221111110
Q ss_pred -------------hhHHHHHHHHHHhhcccHHHHHHHhhccc
Q 023407 173 -------------KNRLKVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 173 -------------rnrLkvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
-...-...|......|++.+|.+.|-.++
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00111224666667788888888776664
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=87.90 E-value=2.4 Score=40.15 Aligned_cols=97 Identities=10% Similarity=-0.071 Sum_probs=65.2
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
..++..+|..|.+.|++++|++.|.++.+..... .+...++-.+.+..|++.....+..+|-++-- .+ ...
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~----~~~ 76 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDK--KY----IKG 76 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TC----HHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CC----HHH
Confidence 3446677778888888888888888877664333 45666667777777888888888777766521 11 223
Q ss_pred HHHHHHHHhhcccHHHHHHHhhcccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
....|..+...|+|++|.+.|-.++.
T Consensus 77 ~~~lg~~~~~~g~~~eA~~~~~~al~ 102 (477)
T 1wao_1 77 YYRRAASNMALGKFRAALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456667777888888877777653
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=87.72 E-value=2.6 Score=33.78 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=53.8
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
..++..+|..|.+.|++++|++.|.++.+..... ....+.+-.+.+..|++.....+..+|-.+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---VKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4678899999999999999999999998765433 356677778888889999999999998776
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=87.69 E-value=4.1 Score=38.09 Aligned_cols=95 Identities=9% Similarity=0.105 Sum_probs=67.8
Q ss_pred HHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhH
Q 023407 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (282)
Q Consensus 96 Ir~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnr 175 (282)
...++..+|..|.+.|++++|+++|.++.+..... ...++++-++.+..|++.....+..+|-.+-- .+.+
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--~~~~---- 386 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN---EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--QNKA---- 386 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------C----
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHH----
Confidence 35778999999999999999999999999865433 45677788888888999999999999877532 1211
Q ss_pred HHHHHHHHHhhcccHHHHHHHhhc
Q 023407 176 LKVYEGLYCMSTRNFKKAASLFLD 199 (282)
Q Consensus 176 Lkvy~gL~~l~~r~f~~AA~lfld 199 (282)
.....|......+++.+|.+.+..
T Consensus 387 a~~~l~~~~~~~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDRRIYA 410 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334445556677766655433
No 172
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.69 E-value=2.6 Score=41.25 Aligned_cols=101 Identities=11% Similarity=-0.024 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHH
Q 023407 75 DELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLIS 154 (282)
Q Consensus 75 ~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~ 154 (282)
-++.+++..++-++.-- -+..+..+|+++.+.|+++.|.+||.++.++. .+.++....+|.+.+.
T Consensus 663 l~~~~~~~A~~~~~~~~----~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~-----------~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES----AEMKWRALGDASLQRFNFKLAIEAFTNAHDLE-----------SLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHTCHHHHHHHHTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH-----------HHHHHHHHTTCHHHHH
T ss_pred hhcCCHHHHHHHHHhhC----cHhHHHHHHHHHHHcCCHHHHHHHHHHccChh-----------hhHHHHHHcCCHHHHH
Confidence 34445555555554321 13578899999999999999999999998864 3444555578887766
Q ss_pred HHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccc
Q 023407 155 KSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 155 ~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
+....|+. .|+.+. +. ...+..|++++|.+.+.++-
T Consensus 728 ~~~~~a~~----~~~~~~------A~-~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 728 TLAKDAET----TGKFNL------AF-NAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHH----TTCHHH------HH-HHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHH----cCchHH------HH-HHHHHcCCHHHHHHHHHHcC
Confidence 55444433 344422 22 23555899999999998874
No 173
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=86.73 E-value=3.2 Score=34.15 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=58.0
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHcc----ChHHHHHHHHHHHHHHhhCCCcch
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYM----DFDLISKSIDKAKSLFEEGGDWER 172 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~----d~~~v~~~i~kA~~~~e~ggdw~r 172 (282)
-.++..+|..|...||.++|++.|.++.+. |+ .+.++++-.+-.. + |+.....+..+| .+. |+...
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~-~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A---~~~-g~~~a 87 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GD-GDALALLAQLKIR-NPQQADYPQARQLAEKA---VEA-GSKSG 87 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC-HHHHHHHHHHTTS-STTSCCHHHHHHHHHHH---HHT-TCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC-HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH---HHC-CCHHH
Confidence 457888999999999999999999998764 22 2233333222222 4 666666777766 222 34332
Q ss_pred hhHHHHHHHHHHhh----cccHHHHHHHhhcccc
Q 023407 173 KNRLKVYEGLYCMS----TRNFKKAASLFLDSIS 202 (282)
Q Consensus 173 rnrLkvy~gL~~l~----~r~f~~AA~lfld~~~ 202 (282)
. ...|...+. .+|+++|...|-.+..
T Consensus 88 ~----~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 88 E----IVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp H----HHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred H----HHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 2 233444444 7799999988888754
No 174
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.16 E-value=14 Score=40.77 Aligned_cols=69 Identities=7% Similarity=-0.113 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHH
Q 023407 78 KKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSI 157 (282)
Q Consensus 78 ~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i 157 (282)
++++ +++++.++... ..+..+|+++.+-|++++|.+.|.++ +-+..+.++-+..|++.......
T Consensus 1181 ~rle-ele~fI~~~n~----ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1181 NRLA-ELEEFINGPNN----AHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred cCHH-HHHHHHhCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 4444 35555543322 35667999999999999999999996 46667777777778877777777
Q ss_pred HHHHH
Q 023407 158 DKAKS 162 (282)
Q Consensus 158 ~kA~~ 162 (282)
.||.+
T Consensus 1245 rKA~n 1249 (1630)
T 1xi4_A 1245 RKANS 1249 (1630)
T ss_pred HHhCC
Confidence 77744
No 175
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=85.44 E-value=2.1 Score=40.28 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=32.7
Q ss_pred HhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 109 QIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 109 ~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
..|+.+.|.+.|.++.+.+... .+++++.+.+-.-.|+...+....++|-..
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~---~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HcCChhHHHHHHHHHHHHCCCC---HHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 4677777777777766655322 355666666666667777777777666543
No 176
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=84.62 E-value=5.2 Score=44.04 Aligned_cols=97 Identities=11% Similarity=0.109 Sum_probs=67.6
Q ss_pred HHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhC-------
Q 023407 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG------- 167 (282)
Q Consensus 95 eIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~g------- 167 (282)
.-...|..+|..+.+.|++++|+++|.++-+ .+-+..++..+.-.|+|..+..++.+|.......
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD--------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADD--------PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHH
Confidence 4477888999999999999999999988622 4556667888888899999999998877544110
Q ss_pred ------CCcchh---------hHHHHHHHHHHhhcccHHHHHHHhhcc
Q 023407 168 ------GDWERK---------NRLKVYEGLYCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 168 ------gdw~rr---------nrLkvy~gL~~l~~r~f~~AA~lfld~ 200 (282)
+.++.- .-+. .-|-++...|+|.+|...|-.+
T Consensus 1175 faYAKl~rleele~fI~~~n~ad~~-~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFINGPNNAHIQ-QVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHHhhcCHHHHHHHHhCCCHHHHH-HHHHHHHhcCCHHHHHHHHHhh
Confidence 111100 0111 1467777888888888877775
No 177
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=83.79 E-value=13 Score=35.50 Aligned_cols=165 Identities=11% Similarity=0.007 Sum_probs=90.5
Q ss_pred HhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHH--HHHHHHHHHH----HHhhCCCcchhh
Q 023407 101 LAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDL--ISKSIDKAKS----LFEEGGDWERKN 174 (282)
Q Consensus 101 ~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~--v~~~i~kA~~----~~e~ggdw~rrn 174 (282)
...-+-+++.||.++|++.|.++.+....+.... +=.+|..+-..+.... -...+++|.. +.+.|..++..
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~t--yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~- 106 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYH--YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA- 106 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHH--HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH--HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH-
Confidence 3445788999999999999999998765554332 2223333322222111 1122344433 34456655544
Q ss_pred HHHHHHHHH--HhhcccHHHHHHHhhccccccccccccCchhHHHHH-HHHHhccCChHHHHHHccCChhHHHhhcCCch
Q 023407 175 RLKVYEGLY--CMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYT-VLTSIISLDRVSLKQKVVDAPEILTVIGKIPY 251 (282)
Q Consensus 175 rLkvy~gL~--~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~-~l~aLasl~R~eLk~kvl~~~e~~~~l~~~P~ 251 (282)
+|..|- +...|++.+|-++|-+-... + +.| |.+.|. +|.++..-.+.+-=.+|++.=.-..+-.....
T Consensus 107 ---tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g----~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 107 ---TFTNGARLAVAKDDPEMAFDMVKQMKAF-G----IQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp ---HHHHHHHHHHHHTCHHHHHHHHHHHHHT-T----CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHc-C----CCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 555542 34578999998888664321 1 223 444554 44455555554443444433111122222334
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHhhhh
Q 023407 252 LSEFLNSLYDC-QYKSFFSAFGEKRSD 277 (282)
Q Consensus 252 l~~ll~sfy~~-~Y~~~~~~L~~~~~~ 277 (282)
...+|..+..+ +....++.|.++++.
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 56677776654 788888888877654
No 178
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=83.77 E-value=25 Score=31.81 Aligned_cols=176 Identities=11% Similarity=0.028 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHH---HHHHHHHhhhhHHH
Q 023407 32 GLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGES---EVREAHLAKSLFYI 108 (282)
Q Consensus 32 ~a~~~ll~~ik~~~m~~~Y~~l~~~~~~~~D~~~~~~~~~~n~~~l~~Le~~lk~~~~nl~~e---eIr~a~~~la~~~~ 108 (282)
.+.+.+.+.... .-..+++.+++. +-+.+..+ -+-..........+.-++-+..-++.. .--.++.-.+..|.
T Consensus 72 ~a~~~la~~~~~-~a~~~l~~l~~~-~~~~~~~~--~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L 147 (310)
T 3mv2_B 72 KVLDLYVQFLDT-KNIEELENLLKD-KQNSPYEL--YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL 147 (310)
T ss_dssp HHHHHHHHHHTT-TCCHHHHHTTTT-SCCCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-cHHHHHHHHHhc-CCCCcHHH--HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence 356666666643 345566655543 22222233 355566666677777777776653322 34566778899999
Q ss_pred HhCCHHHHHHHHHHhhcccc---CchhHHHHHHHHHHHHHHcc--ChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHH
Q 023407 109 QIGDKEKALEQLKVTESKTV---AVGQKMDLVFYTLQLGFFYM--DFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLY 183 (282)
Q Consensus 109 ~iGd~~~A~k~y~~~~e~~~---s~~~~id~~l~~irv~~~~~--d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~ 183 (282)
+.|..+.|.+.+.++.+-.. +....+=+.+.-.-|.+..| ++...-...++ +.+..++|....-|-. .
T Consensus 148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~E---l~~~~p~~~~~~lLln----~ 220 (310)
T 3mv2_B 148 LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEE---LSQTFPTWKTQLGLLN----L 220 (310)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHH---HHTTSCSHHHHHHHHH----H
T ss_pred HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHH---HHHhCCCcccHHHHHH----H
Confidence 99999999999998876433 22233333333334455555 55555444544 4566677766443333 6
Q ss_pred HhhcccHHHHHHHhhccc---cccccccccCchhHHHH
Q 023407 184 CMSTRNFKKAASLFLDSI---STFTTYELFPYDTFIFY 218 (282)
Q Consensus 184 ~l~~r~f~~AA~lfld~~---~tft~~elis~~d~a~Y 218 (282)
.+..|+|.+|-+.+-... |.|.--|.+.+++--++
T Consensus 221 ~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 221 HLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp HHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 889999999988874322 34433344445554444
No 179
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=83.45 E-value=4.7 Score=37.82 Aligned_cols=98 Identities=11% Similarity=-0.058 Sum_probs=65.6
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
-..+..+|.++.+.|+.++|.+.|.++.+... .+.-.++....++-.-.|+++.......+|-+... . ..
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--~------~~ 390 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIED--IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--T------RH 390 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--C------CT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc--cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--C------ch
Confidence 34677889999999999999999999987432 22223555555555556777777777777655321 1 12
Q ss_pred HHHHHHHHh---hcccHHHHHHHhhcccccc
Q 023407 177 KVYEGLYCM---STRNFKKAASLFLDSISTF 204 (282)
Q Consensus 177 kvy~gL~~l---~~r~f~~AA~lfld~~~tf 204 (282)
.+|.+...+ ..|++.+|-..|-.++..+
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 344444333 5889999999888876544
No 180
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=83.14 E-value=3.6 Score=28.85 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=29.4
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCc
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV 130 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~ 130 (282)
.++..+|.-|.+.|++++|++.|.++.+.....
T Consensus 39 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 39 VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 568899999999999999999999999877655
No 181
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=82.98 E-value=8 Score=36.50 Aligned_cols=94 Identities=11% Similarity=0.128 Sum_probs=69.3
Q ss_pred HhCCHHHHHHHHHHhhc---cccCchh--HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHH--HH
Q 023407 109 QIGDKEKALEQLKVTES---KTVAVGQ--KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY--EG 181 (282)
Q Consensus 109 ~iGd~~~A~k~y~~~~e---~~~s~~~--~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy--~g 181 (282)
..|++++|+..|.++.+ ..-++.| ...+.-++..+....|+|.....+..+|-...++---.+-..-...+ .|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46899999999999665 4555555 56667778888888999999999999998887762112222222233 45
Q ss_pred HHHhhcccHHHHHHHhhcccc
Q 023407 182 LYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 182 L~~l~~r~f~~AA~lfld~~~ 202 (282)
..+..+|+|.+|..++-.++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 667789999999999988754
No 182
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=82.70 E-value=16 Score=34.28 Aligned_cols=98 Identities=7% Similarity=-0.151 Sum_probs=71.7
Q ss_pred hHHHHhCCHHHHHHHHHHhhcc---ccCchh--HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHH
Q 023407 105 LFYIQIGDKEKALEQLKVTESK---TVAVGQ--KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 179 (282)
Q Consensus 105 ~~~~~iGd~~~A~k~y~~~~e~---~~s~~~--~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy 179 (282)
+-+.+.|++++|++.|.++.+. .-+..| .+.+.-++..+....|+|.....+..++-...++---.+-......+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3345779999999999998754 344444 57778888888889999999999999998887662112222223333
Q ss_pred --HHHHHhhcccHHHHHHHhhcccc
Q 023407 180 --EGLYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 180 --~gL~~l~~r~f~~AA~lfld~~~ 202 (282)
.|..+..+|+|++|..++-.++.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45666779999999999988864
No 183
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=82.66 E-value=20 Score=32.88 Aligned_cols=95 Identities=3% Similarity=-0.108 Sum_probs=54.5
Q ss_pred HHHHhhhhHHHHhCC-HHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHH
Q 023407 98 EAHLAKSLFYIQIGD-KEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (282)
Q Consensus 98 ~a~~~la~~~~~iGd-~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrL 176 (282)
.++..+|..+.+.|+ +++|+++|.++.+..... .+.+.+.-.+-...|++........+|-.+-- .+ ...
T Consensus 132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~---~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP--~~----~~a 202 (382)
T 2h6f_A 132 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---YQVWHHRRVLVEWLRDPSQELEFIADILNQDA--KN----YHA 202 (382)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--TC----HHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--cC----HHH
Confidence 466777777777774 777777777777644332 33444444555555777776666666655321 11 112
Q ss_pred HHHHHHHHhhcccHHHHHHHhhccc
Q 023407 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 177 kvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
-.+.|..+...|+|.+|...|-.++
T Consensus 203 ~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 203 WQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Confidence 2344555555566666666555554
No 184
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=82.16 E-value=1.9 Score=32.13 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHH--HHHHHHhhhhHHHHhCCHHHHHHHHHHhh
Q 023407 67 DSMRTKIEDELKKLDDRIADAEENLGESE--VREAHLAKSLFYIQIGDKEKALEQLKVTE 124 (282)
Q Consensus 67 ~~~~~~n~~~l~~Le~~lk~~~~nl~~ee--Ir~a~~~la~~~~~iGd~~~A~k~y~~~~ 124 (282)
+.+.++.++-+..++..|+..+. .++- ...+|..=|.||.+.||..+|+.++.=+.
T Consensus 5 ~~L~Eki~kYi~~l~eaL~~i~~--a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~ 62 (86)
T 2oo2_A 5 EELRRETLKWLERIEERVKEIEG--DEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAW 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHHGGGEEE--CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455556666666666655442 2333 34458888999999999999999886544
No 185
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=81.88 E-value=3.1 Score=34.23 Aligned_cols=93 Identities=17% Similarity=0.100 Sum_probs=57.0
Q ss_pred HHHHHhhhhHHHHhC----CHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHc-------cChHHHHHHHHHHHHHHh
Q 023407 97 REAHLAKSLFYIQIG----DKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY-------MDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 97 r~a~~~la~~~~~iG----d~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~-------~d~~~v~~~i~kA~~~~e 165 (282)
..++..+|..|.. | |.++|++.|.++.+. |+ .+. ...+|..+ +|+.....+..+|-..
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~-~~a---~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-- 118 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GS-KSG---EIVLARVLVNRQAGATDVAHAITLLQDAARD-- 118 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TC-HHH---HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CC-HHH---HHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--
Confidence 4688899999999 7 999999999998653 22 222 23344443 3454444444444321
Q ss_pred hCCCcchhhHHHHHHHHHHhh----cccHHHHHHHhhcccc
Q 023407 166 EGGDWERKNRLKVYEGLYCMS----TRNFKKAASLFLDSIS 202 (282)
Q Consensus 166 ~ggdw~rrnrLkvy~gL~~l~----~r~f~~AA~lfld~~~ 202 (282)
|+.+....-....|..... .+|+.+|...|-.+..
T Consensus 119 --~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 119 --SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp --TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred --CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 2211112223344555555 7899999999988753
No 186
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=81.51 E-value=8.5 Score=36.14 Aligned_cols=79 Identities=16% Similarity=-0.034 Sum_probs=62.4
Q ss_pred HHhhCHH--HHHHHHHhhhhHHHHhCCHHHHHHHHHHhh---ccccCchh--HHHHHHHHHHHHHHccChHHHHHHHHHH
Q 023407 88 EENLGES--EVREAHLAKSLFYIQIGDKEKALEQLKVTE---SKTVAVGQ--KMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (282)
Q Consensus 88 ~~nl~~e--eIr~a~~~la~~~~~iGd~~~A~k~y~~~~---e~~~s~~~--~id~~l~~irv~~~~~d~~~v~~~i~kA 160 (282)
++-+|.+ .+...+..+|.-|...|++++|++.|.++. +..-+..| +...++++-.+-...|++.....++.||
T Consensus 318 ~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 318 SERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp SCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3445554 456679999999999999999999999865 44445544 4555677777777889999999999999
Q ss_pred HHHHhh
Q 023407 161 KSLFEE 166 (282)
Q Consensus 161 ~~~~e~ 166 (282)
-.+.+.
T Consensus 398 l~i~~~ 403 (429)
T 3qwp_A 398 FDIMRV 403 (429)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999886
No 187
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=80.64 E-value=6.4 Score=30.53 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=53.1
Q ss_pred HHHHHhhhhH-HHHhCCH--HHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 023407 97 REAHLAKSLF-YIQIGDK--EKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (282)
Q Consensus 97 r~a~~~la~~-~~~iGd~--~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~ 164 (282)
-.++..+|.. |.+.|+. ++|++.|.++.+..... ....+.+.++.+..|++.....+..++-...
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE---ITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 3467888998 8899998 99999999988765433 3567788888888999999999999887653
No 188
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=80.41 E-value=4 Score=30.37 Aligned_cols=68 Identities=18% Similarity=0.287 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----hCHH--HHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHH
Q 023407 69 MRTKIEDELKKLDDRIADAEEN----LGES--EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQ 142 (282)
Q Consensus 69 ~~~~n~~~l~~Le~~lk~~~~n----l~~e--eIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~ir 142 (282)
+.++.++-+..++..|+..+.. ..++ +...+|..=|.||.+.||..+|+.++.=+.- +|.-+|
T Consensus 5 l~Eki~kYi~~leeaL~~i~~~~l~~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~G-----------wLDAlR 73 (87)
T 2pmr_A 5 CRERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRDDSVYYLEKGDHITSFGCITYAHG-----------LLDSLR 73 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HHHHHH
Confidence 3455666666777777766531 1222 2334588889999999999999999876542 344467
Q ss_pred HHHHc
Q 023407 143 LGFFY 147 (282)
Q Consensus 143 v~~~~ 147 (282)
++.|.
T Consensus 74 ~~~~~ 78 (87)
T 2pmr_A 74 MLHRI 78 (87)
T ss_dssp HHTTS
T ss_pred Hhccc
Confidence 76654
No 189
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=80.25 E-value=8 Score=33.30 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=32.1
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
++..+|..|.+.|++++|++.|.++.+..... ....+.+-.+-...|++.....++.+|-.+
T Consensus 40 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 40 YYTNRALCYLKMQQPEQALADCRRALELDGQS---VKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555666666666666666666655432221 233344444444555666555555555443
No 190
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=79.80 E-value=10 Score=34.75 Aligned_cols=98 Identities=8% Similarity=-0.078 Sum_probs=69.6
Q ss_pred HHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHhhCCCcchh
Q 023407 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMD-FDLISKSIDKAKSLFEEGGDWERK 173 (282)
Q Consensus 95 eIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d-~~~v~~~i~kA~~~~e~ggdw~rr 173 (282)
.-..++..+|..+.+.|+.++|++.|.++........ +.+.+.-.+-...|+ +........+|-.+-- + .
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~---~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P---~---~ 165 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY---TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP---K---N 165 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT---T---C
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH---HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC---C---C
Confidence 3467788899999999999999999999987655432 344555555556674 8888888888766421 1 1
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHhhccc
Q 023407 174 NRLKVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 174 nrLkvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
...-...|..+...|+|.+|...|-.++
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal 193 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADIL 193 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2233455666777788888888877664
No 191
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=79.11 E-value=7.7 Score=38.29 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhcc
Q 023407 136 LVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 136 ~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~ 200 (282)
..+..-++.+..|++.......++|-..- ..+|+ .....|..++..|+|.+|...|-.+
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~a 493 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWR----LVWYRAVAELLTGDYDSATKHFTEV 493 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHH----HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHH----HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444455555555544444331 12222 2233444445555555555555444
No 192
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=79.09 E-value=6.3 Score=28.31 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHH
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVF 138 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l 138 (282)
+..=+....+|+-+.+.|+.++|..+|.++.--|..++..+.++=
T Consensus 14 e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q 58 (73)
T 3ax2_A 14 QKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 58 (73)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334445567899999999999999999999999999999887753
No 193
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=78.75 E-value=6.1 Score=33.52 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhccCChHHHHHHccCChhHHHhhcCCchH
Q 023407 173 KNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYL 252 (282)
Q Consensus 173 rnrLkvy~gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLasl~R~eLk~kvl~~~e~~~~l~~~P~l 252 (282)
+-+..-|.|...|..++|.+|-+.|..+.....-...---.-+-.|-+.+.|+.=.-+ +.++.+--+..| .
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP--------~~~ll~~~~~~~-y 83 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP--------TVELLKKYHLMQ-F 83 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE--------CHHHHHHTTCGG-G
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC--------CHHHhhhCchhH-H
Confidence 5678899999999999999999999998654321111112345678888888753212 111211122234 5
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhhh
Q 023407 253 SEFLNSLYDCQYKSFFSAFGEKRSDA 278 (282)
Q Consensus 253 ~~ll~sfy~~~Y~~~~~~L~~~~~~~ 278 (282)
.+++.++-.++...|-+.|+..++.+
T Consensus 84 ~~L~~Avr~Gdl~~f~~~l~~~~~~f 109 (203)
T 3t5x_A 84 AEVTRAVSEGNLLLLHEALAKHEAFF 109 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhHHHH
Confidence 69999999999999999999877654
No 194
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=78.20 E-value=6.6 Score=30.79 Aligned_cols=63 Identities=16% Similarity=0.060 Sum_probs=44.6
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA 160 (282)
..++..+|..+.+.|+.++|++.|.++.....+... ......+..+....|+++.......++
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQD-GEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT-THHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh-HHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 467888999999999999999999998876543211 234455566666677777665555554
No 195
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=77.93 E-value=18 Score=29.42 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhH
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQK 133 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~ 133 (282)
+.-|++++.+|--|++.||+++|.+.+.++.+.-....+-
T Consensus 68 ~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 68 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 4567888888888888888888888888877655544433
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=75.15 E-value=5.5 Score=35.55 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=52.1
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
.++..+|..|.+.|++++|++.|.++.+..... ...++++-++-+..|++.....++.+|-.+
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN---PKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999998765432 456677777888889999999998888665
No 197
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=74.88 E-value=21 Score=32.95 Aligned_cols=58 Identities=17% Similarity=-0.069 Sum_probs=32.3
Q ss_pred HHHHhhhhHHHH----hCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHH----ccChHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQ----IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKA 160 (282)
Q Consensus 98 ~a~~~la~~~~~----iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~----~~d~~~v~~~i~kA 160 (282)
.++..+|..|.. .||.++|++.|.++.+.. + .+..+.+-++-.. .+|+.....+..+|
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 141 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----L-PQAQQNLGVMYHEGNGVKVDKAESVKWFRLA 141 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----C-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 466677777777 777777777777766531 1 1222222233222 34666666666555
No 198
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=73.98 E-value=16 Score=29.67 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhcc-ccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHH
Q 023407 114 EKALEQLKVTESK-TVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKK 192 (282)
Q Consensus 114 ~~A~k~y~~~~e~-~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~ 192 (282)
..+.+.|.+..+. .++...+++...++++ ..+...+..-|.--+.+++.. +++++.-.--|.|+.++..|+|.+
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~----S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----SKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHT----CSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 3444444443321 1344444444444444 334455555555555555431 132222223444555555555555
Q ss_pred HHHH
Q 023407 193 AASL 196 (282)
Q Consensus 193 AA~l 196 (282)
|-+.
T Consensus 90 A~~y 93 (152)
T 1pc2_A 90 ALKY 93 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 199
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=73.21 E-value=47 Score=31.69 Aligned_cols=159 Identities=11% Similarity=0.029 Sum_probs=102.5
Q ss_pred CHHHHHHHHHHhhccccC----------chhHHH---HHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcc-----hh
Q 023407 112 DKEKALEQLKVTESKTVA----------VGQKMD---LVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE-----RK 173 (282)
Q Consensus 112 d~~~A~k~y~~~~e~~~s----------~~~~id---~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~-----rr 173 (282)
-++.|-....++.--|.+ ++.+.. +.-.++++.+-.++....++-+...++.-. -.+.+ -+
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~-~p~~~~~p~~q~ 219 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSM-LAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCC-CSCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCC-CcChhhCCccce
Confidence 355666666666665543 112332 344678999999999988888876666411 00122 35
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHhhccccc-cccc---c-cc-CchhHHHHHHHHHhccCChH--HHHHHccCChhHHHh
Q 023407 174 NRLKVYEGLYCMSTRNFKKAASLFLDSIST-FTTY---E-LF-PYDTFIFYTVLTSIISLDRV--SLKQKVVDAPEILTV 245 (282)
Q Consensus 174 nrLkvy~gL~~l~~r~f~~AA~lfld~~~t-ft~~---e-li-s~~d~a~Y~~l~aLasl~R~--eLk~kvl~~~e~~~~ 245 (282)
.+.+-|.|-..+..++|.+|-+.|..+.-. .... + -. --.-+-.|-+.+.|+.=+.+ .+-++-. .|++.
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~-~~~L~-- 296 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFL-SQETI-- 296 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGS-CHHHH--
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccc-hHHHH--
Confidence 889999999999999999999999998654 2211 1 01 11346788888888763222 2211111 12222
Q ss_pred hcCCchHHHHHHHHhcCChhHHHHHHHHhhhhh
Q 023407 246 IGKIPYLSEFLNSLYDCQYKSFFSAFGEKRSDA 278 (282)
Q Consensus 246 l~~~P~l~~ll~sfy~~~Y~~~~~~L~~~~~~~ 278 (282)
|...+++.+.-.++...|-+.|+..+..+
T Consensus 297 ----~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f 325 (455)
T 3t5v_B 297 ----DNWSVLYKHVRYGNIQGVSLWLRQNERHL 325 (455)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred ----HHHHHHHHHHHhCCHHHHHHHHHHhHHHH
Confidence 33457899999999999999999887654
No 200
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=72.58 E-value=25 Score=32.32 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=33.3
Q ss_pred HHHHhhhhHHHH----hCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHH----ccChHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQ----IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKA 160 (282)
Q Consensus 98 ~a~~~la~~~~~----iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~----~~d~~~v~~~i~kA 160 (282)
.++..+|..|.. .+|.++|++.|.++.+.. ..+..+.+-.+-.. .+|+.....+..+|
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 466677777777 677777777777766532 12333333333332 34566655555555
No 201
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=72.53 E-value=20 Score=29.29 Aligned_cols=66 Identities=9% Similarity=-0.067 Sum_probs=49.8
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhcc-------ccCchhH-HHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESK-------TVAVGQK-MDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~-------~~s~~~~-id~~l~~irv~~~~~d~~~v~~~i~kA~~~~ 164 (282)
+|..+|.-+.+.|++++|+.+|.++.+. ......- |.-+++.=..-...|+++.......+|-.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999986 4321111 1222555555556789999999999998774
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=71.06 E-value=12 Score=24.85 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=27.3
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhcccc
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTV 128 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~ 128 (282)
.++..+|..|.+.|+.++|++.|.++.+...
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4678899999999999999999999887643
No 203
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=70.66 E-value=31 Score=32.26 Aligned_cols=168 Identities=10% Similarity=0.135 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC--HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhh-ccccCchhHHHHHHHHHH
Q 023407 66 LDSMRTKIEDELKKLDDRIADAEENLG--ESEVREAHLAKSLFYIQIGDKEKALEQLKVTE-SKTVAVGQKMDLVFYTLQ 142 (282)
Q Consensus 66 ~~~~~~~n~~~l~~Le~~lk~~~~nl~--~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~-e~~~s~~~~id~~l~~ir 142 (282)
+++.++..+..+++|..+|.+++.+.- ..-++..+.-+..-+.++.|.++.+..|..-+ ..=.-++.+|+.-+. +
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~--~ 135 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ--R 135 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH--H
Confidence 777888899999999999998875543 35577778888889999999999999998844 445677777877776 5
Q ss_pred HHHHccChHHHHHHHHHHHHHHhhCCCcchh-hHHHHHHHHHH-hhcccHHHHHHHhhccccccccccccCchhHHHHHH
Q 023407 143 LGFFYMDFDLISKSIDKAKSLFEEGGDWERK-NRLKVYEGLYC-MSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTV 220 (282)
Q Consensus 143 v~~~~~d~~~v~~~i~kA~~~~e~ggdw~rr-nrLkvy~gL~~-l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~ 220 (282)
|-+...+......-|.|.+.-|+- -++ =+-.|...+.+ +...+|..=-+.++.+.+ ..+.+..|.
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~Id~----c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv~a----~~llP~~~~----- 202 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDIDI----KIRSCKGSCSRALEHKVDLEDYKNQQKQLEQVIA----INLLPSRDI----- 202 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhcccccccchhhhhhccHHHHHHHHHHHHhhhh----hcccccccc-----
Confidence 556677888888888888888742 111 22223333322 245556555555555543 334444443
Q ss_pred HHHhccCChHHHHHHccCChhHHHhhcCCch
Q 023407 221 LTSIISLDRVSLKQKVVDAPEILTVIGKIPY 251 (282)
Q Consensus 221 l~aLasl~R~eLk~kvl~~~e~~~~l~~~P~ 251 (282)
-.|..|.=..+|.. --++|++.+...|.
T Consensus 203 -q~lp~LK~~p~kd~--vP~~fKsq~q~a~~ 230 (390)
T 1deq_A 203 -QYLPILKMSTITGP--VPREFKSQLQEAPL 230 (390)
T ss_pred -cccccccccccccc--CChhhcccccccch
Confidence 12223332334433 34577766666555
No 204
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=70.09 E-value=13 Score=35.64 Aligned_cols=47 Identities=9% Similarity=-0.016 Sum_probs=21.9
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLIS 154 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~ 154 (282)
+..+|+-+.+.|++++|+++|.++- .+..+..++-.++..|+|...+
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHH
Confidence 3344444445555555555555551 1333444444555555555443
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=68.81 E-value=6 Score=27.45 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=28.9
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCch
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG 131 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~ 131 (282)
++..+|..|.+.|+.++|+++|.++.+......
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 888999999999999999999999987655443
No 206
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=68.42 E-value=30 Score=24.90 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCc-chhhHHHHHHHHHHhhcccHHHHHHHhhccc
Q 023407 135 DLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDW-ERKNRLKVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 135 d~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw-~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
+-|+.+=++.+..+|+........+|-...+.+..+ ..+..+--+.|......|+++.|-..+-.++
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 468899999999999999999999999887643322 2344555667888889999999998887764
No 207
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=68.23 E-value=36 Score=26.74 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHhhcc-ccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhccc
Q 023407 111 GDKEKALEQLKVTESK-TVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRN 189 (282)
Q Consensus 111 Gd~~~A~k~y~~~~e~-~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~ 189 (282)
.++..+-+.|.+..+. .++...+++...++|+ -.+...+...|.-.+.+... ++++++--.--|.|+.+...|+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~----S~~~~d~~~GI~lLe~l~~~-~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----TRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT----SSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhhh
Confidence 3456666777766542 2788888888888887 67899999999999998874 3344444445677999999999
Q ss_pred HHHHHHHh
Q 023407 190 FKKAASLF 197 (282)
Q Consensus 190 f~~AA~lf 197 (282)
|.+|-+.+
T Consensus 90 Y~~A~~~~ 97 (126)
T 1nzn_A 90 YEKALKYV 97 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99986544
No 208
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=67.83 E-value=11 Score=28.46 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=34.3
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLV 137 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~ 137 (282)
....+|+-+...|+.+.|+.+|.++.--|..++..+.++
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~ 60 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 60 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345789999999999999999999999999999888764
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=67.68 E-value=3.7 Score=29.43 Aligned_cols=30 Identities=7% Similarity=0.100 Sum_probs=26.8
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccc
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKT 127 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~ 127 (282)
.++..+|.-|.+.|++++|+++|.++.+.+
T Consensus 42 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 42 GTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 478899999999999999999999987653
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=66.74 E-value=22 Score=27.06 Aligned_cols=61 Identities=15% Similarity=-0.007 Sum_probs=41.8
Q ss_pred HHHHHhhhhHHHH----hCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHH----ccChHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQ----IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKS 162 (282)
Q Consensus 97 r~a~~~la~~~~~----iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~----~~d~~~v~~~i~kA~~ 162 (282)
-.++..+|..|.. .+|.++|++.|.++-+. |+ .+.+.++-.+-.. .+|+.....+..+|-.
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 4678889999988 78999999999998764 22 3344444444444 4666666666666644
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=63.82 E-value=14 Score=26.72 Aligned_cols=33 Identities=6% Similarity=-0.199 Sum_probs=27.3
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccC
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVA 129 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s 129 (282)
-.+..-+|..+++.|+++.|+..|.++.+-...
T Consensus 43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 43 EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 356677899999999999999999998875444
No 212
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=63.51 E-value=23 Score=35.47 Aligned_cols=65 Identities=6% Similarity=-0.070 Sum_probs=51.0
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~ 164 (282)
+...++|..+.||.++|-..|.++...|.......+++...++.=.-+||...+.+-..|+....
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34567777888888888888888888877666777888888888888888888888887776654
No 213
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=63.26 E-value=14 Score=29.23 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHH
Q 023407 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDL 136 (282)
Q Consensus 93 ~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~ 136 (282)
.+.-|+.+.-+|--|++.||+++|.+......+.-....+-.++
T Consensus 70 p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 70 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45789999999999999999999999999988877766666543
No 214
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=62.74 E-value=10 Score=36.32 Aligned_cols=94 Identities=10% Similarity=-0.020 Sum_probs=48.5
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH---------hhCC
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF---------EEGG 168 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~---------e~gg 168 (282)
.++..+|+.++..|.+++|...|.++ +-+..++..-+..|++........||...- -..|
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a-----------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ 191 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK 191 (449)
T ss_dssp --------------CTTTHHHHHHHT-----------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-----------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcC
Confidence 38999999999999999999999987 344555556666778888777777774331 0134
Q ss_pred CcchhhH----HHHH----HH--HHHhhcccHHHHHHHhhcccc
Q 023407 169 DWERKNR----LKVY----EG--LYCMSTRNFKKAASLFLDSIS 202 (282)
Q Consensus 169 dw~rrnr----Lkvy----~g--L~~l~~r~f~~AA~lfld~~~ 202 (282)
+|++--+ +.++ .. -+....|.|.+|+.+|=.++.
T Consensus 192 ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 192 EFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp CHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 5543200 0000 01 123456788888888777764
No 215
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=62.24 E-value=43 Score=27.84 Aligned_cols=81 Identities=16% Similarity=0.050 Sum_probs=49.9
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLk 177 (282)
.-|..+|+-..+.|+++-|.+||.++.|+.. +.+ +....||.+.+.+-...|+ ..||+..
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~---------L~~--Ly~~tg~~e~L~kla~iA~----~~g~~n~----- 94 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQTQHSFDK---------LSF--LYLVTGDVNKLSKMQNIAQ----TREDFGS----- 94 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH---------HHH--HHHHHTCHHHHHHHHHHHH----HTTCHHH-----
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhCCHHH---------HHH--HHHHhCCHHHHHHHHHHHH----HCccHHH-----
Confidence 3588899999999999999999999988542 111 2222466555543333322 2233322
Q ss_pred HHHHHHHhhcccHHHHHHHhhcc
Q 023407 178 VYEGLYCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 178 vy~gL~~l~~r~f~~AA~lfld~ 200 (282)
.....+..|+++++.+.|.++
T Consensus 95 --af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 95 --MLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp --HHHHHHHHTCHHHHHHHHHHT
T ss_pred --HHHHHHHcCCHHHHHHHHHHC
Confidence 133455667777777777666
No 216
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=61.42 E-value=78 Score=29.99 Aligned_cols=92 Identities=15% Similarity=-0.033 Sum_probs=51.1
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
.+..+-.-|++.|+.+.|++.|.++.+....+... .+-.+|....-.|+++.+....++- .+.|..++.. .
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~--tyn~lI~~~~~~g~~~~A~~l~~~M---~~~G~~Pd~~----t 177 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR--SYGPALFGFCRKGDADKAYEVDAHM---VESEVVPEEP----E 177 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHTTCHHHHHHHHHHH---HHTTCCCCHH----H
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--eehHHHHHHHHCCCHHHHHHHHHHH---HhcCCCCCHH----H
Confidence 46666777777777777777777777665444322 2444555555566666555554432 3345544443 3
Q ss_pred HHHH--HHhhcccHHHHHHHhhc
Q 023407 179 YEGL--YCMSTRNFKKAASLFLD 199 (282)
Q Consensus 179 y~gL--~~l~~r~f~~AA~lfld 199 (282)
|..| .+...|++.+|-++|-.
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHH
Confidence 4443 22335566665555543
No 217
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=60.99 E-value=22 Score=32.84 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=52.1
Q ss_pred HHHhhhhHHHHhC---CHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHc-------cChHHHHHHHHHHHHHHhhCC
Q 023407 99 AHLAKSLFYIQIG---DKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY-------MDFDLISKSIDKAKSLFEEGG 168 (282)
Q Consensus 99 a~~~la~~~~~iG---d~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~-------~d~~~v~~~i~kA~~~~e~gg 168 (282)
++..+|..|.+.| |.++|++.|.++.+......+.. ..+|..+ +|+.....+..+|- .|
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g 246 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV------DSVARVLGDATLGTPDEKTAQALLEKIA-----PG 246 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH------HHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GG
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH------HHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CC
Confidence 8899999999999 99999999999887654444321 1122222 46666666666654 13
Q ss_pred CcchhhHHHH--HHHHHHhhcccHHHHHHHhhcc
Q 023407 169 DWERKNRLKV--YEGLYCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 169 dw~rrnrLkv--y~gL~~l~~r~f~~AA~lfld~ 200 (282)
+.+....|.. |.| ...+++.+|...|-.+
T Consensus 247 ~~~a~~~Lg~~~~~~---~~~~d~~~A~~~~~~A 277 (452)
T 3e4b_A 247 YPASWVSLAQLLYDF---PELGDVEQMMKYLDNG 277 (452)
T ss_dssp STHHHHHHHHHHHHS---GGGCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHH
Confidence 4433333322 111 2355666666555554
No 218
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=60.16 E-value=42 Score=23.66 Aligned_cols=79 Identities=13% Similarity=-0.003 Sum_probs=58.6
Q ss_pred HHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHH
Q 023407 115 KALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAA 194 (282)
Q Consensus 115 ~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA 194 (282)
.|++.|.++.+..... .+..+.+-.+.+..|++.....+..+|-..- .+. .......|..+...|++.+|.
T Consensus 3 ~a~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~---~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 3 AITERLEAMLAQGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTY---SVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CHHHHHHHHHTTTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC---HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCc---HHHHHHHHHHHHHcCCHHHHH
Confidence 5788888887654433 3567778888888999999999999887653 121 223356688888999999999
Q ss_pred HHhhcccc
Q 023407 195 SLFLDSIS 202 (282)
Q Consensus 195 ~lfld~~~ 202 (282)
..|-.++.
T Consensus 74 ~~~~~al~ 81 (115)
T 2kat_A 74 QAWESGLA 81 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 219
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=58.76 E-value=34 Score=28.31 Aligned_cols=68 Identities=12% Similarity=-0.009 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCC---cchhhHHHHHHHHHHhhcccHHHHHHHhhccc
Q 023407 134 MDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGD---WERKNRLKVYEGLYCMSTRNFKKAASLFLDSI 201 (282)
Q Consensus 134 id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggd---w~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~ 201 (282)
+-.++..++-.+..+-++.|..-.+.+-++.+...| .+-+...-+|.|-.....|+|.+|...|-.++
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 345788999999999999999999999998865444 45678899999999999999999999998863
No 220
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=58.66 E-value=62 Score=25.08 Aligned_cols=50 Identities=18% Similarity=0.072 Sum_probs=33.7
Q ss_pred HHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHcc
Q 023407 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYM 148 (282)
Q Consensus 95 eIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~ 148 (282)
+++.....+-+=|...||.++|.+|....- .+...-.++-..|-.++..+
T Consensus 5 el~kki~~ll~EY~~~~D~~Ea~~cl~eL~----~p~f~~e~V~~~i~~alE~~ 54 (129)
T 2nsz_A 5 HLVKEIDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLEST 54 (129)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHT----CGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhC----CCccHHHHHHHHHHHHHcCC
Confidence 344444455556668899999999998864 33555566666777776654
No 221
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=57.46 E-value=36 Score=28.60 Aligned_cols=62 Identities=11% Similarity=0.031 Sum_probs=49.5
Q ss_pred hhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhcccc--CchhHHHHHHHHHHHHHHccChH
Q 023407 90 NLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTV--AVGQKMDLVFYTLQLGFFYMDFD 151 (282)
Q Consensus 90 nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~--s~~~~id~~l~~irv~~~~~d~~ 151 (282)
..-..++-.=+.-+|.++..-+|+.+|.+++..+...|. +.+++.-+...+|=+.+..|..+
T Consensus 7 ~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 7 DYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344556666678899999999999999999999999996 45778888888888888888744
No 222
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=55.47 E-value=64 Score=24.28 Aligned_cols=86 Identities=17% Similarity=0.038 Sum_probs=58.4
Q ss_pred hhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHhhCCCcchhhHHHH
Q 023407 103 KSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (282)
Q Consensus 103 la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~----~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkv 178 (282)
+|..|..-++.+.|++.|.++-+. |+ .+.++++=.+-.. -+|+.....+..+|-.. |+.+.- .
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~----g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~~a~----~ 97 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL----NS-GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----NDQDGC----L 97 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT----TC-HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHH----H
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC----CC-HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CCHHHH----H
Confidence 899999999999999999998775 22 2444444444444 46888888888777432 444333 2
Q ss_pred HHHHHHhh----cccHHHHHHHhhccc
Q 023407 179 YEGLYCMS----TRNFKKAASLFLDSI 201 (282)
Q Consensus 179 y~gL~~l~----~r~f~~AA~lfld~~ 201 (282)
..|..... .+|+++|...|-.+.
T Consensus 98 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 98 ILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 23444455 789999988887663
No 223
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.18 E-value=37 Score=33.15 Aligned_cols=113 Identities=8% Similarity=0.127 Sum_probs=85.1
Q ss_pred HHHHHhcCCCC--CHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhhCHHH--HHHHHHhhhhHHHHhCCH
Q 023407 51 ETLVAESVLEM--DQSV-------------LDSMRTKIEDELKKLDDRIADAEENLGESE--VREAHLAKSLFYIQIGDK 113 (282)
Q Consensus 51 ~~l~~~~~~~~--D~~~-------------~~~~~~~n~~~l~~Le~~lk~~~~nl~~ee--Ir~a~~~la~~~~~iGd~ 113 (282)
+.-|++-.||+ |++| +.+.++.....+++|..++++++.|.-+.+ ++.-+..+-.-..+.+|.
T Consensus 25 qs~Cke~~WPfCaDeDwGvkCPSGCrLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dN 104 (562)
T 3ghg_A 25 QSACKDSDWPFCSDEDWNYKCPSGCRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNR 104 (562)
T ss_dssp --CCCCCCCCBCCSSSBTTEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHH
T ss_pred ccccccCCCCcccccccCCCCCcccchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcc
Confidence 34577667776 6665 888899999999999999999987665544 455677777778888999
Q ss_pred HHHHHHHH-HhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Q 023407 114 EKALEQLK-VTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 114 ~~A~k~y~-~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e 165 (282)
++.+..|. ..+..=..+..+||..++.| ....++......-|.|.+.-|+
T Consensus 105 dNtynE~S~ELRRrIqyLKekVdnQlsnI--rvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 105 DNTYNRVSEDLRSRIEVLKRKVIEKVQHI--QLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 46666678888888888555 4557777777777777777765
No 224
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=54.07 E-value=25 Score=34.69 Aligned_cols=56 Identities=14% Similarity=0.308 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh----------cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023407 32 GLKGEVFSMVKAHDMASFYETLVAE----------SVLEMDQSVLDSMRTKIEDELKKLDDRIADA 87 (282)
Q Consensus 32 ~a~~~ll~~ik~~~m~~~Y~~l~~~----------~~~~~D~~~~~~~~~~n~~~l~~Le~~lk~~ 87 (282)
.+...+...+++..+...|..+--. .|+++|.+.++.+.....+++++|+.++.+.
T Consensus 172 ~L~~~L~~~L~e~~l~~l~~~~E~pl~~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~ 237 (592)
T 3pv8_A 172 ELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYEL 237 (592)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHhHHHHHHHHHhcCCEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888999998876222 3899999999999999999999999998653
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=49.91 E-value=84 Score=24.98 Aligned_cols=57 Identities=19% Similarity=0.084 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHH
Q 023407 75 DELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDL 136 (282)
Q Consensus 75 ~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~ 136 (282)
.-+.=|+.-+++ +.+..|+.+.-+|-=|++.||+++|.+......+.-....+...+
T Consensus 61 ~GI~LLe~l~~~-----~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 61 LGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHHHhc-----CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 344445444442 245689999999999999999999999999999988888777654
No 226
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=48.81 E-value=58 Score=27.69 Aligned_cols=28 Identities=29% Similarity=0.171 Sum_probs=17.1
Q ss_pred HHHhhhhHHHHhCCHHHHHHHHHHhhcc
Q 023407 99 AHLAKSLFYIQIGDKEKALEQLKVTESK 126 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~k~y~~~~e~ 126 (282)
++..+|..|.+.|+.++|++.|.++...
T Consensus 221 ~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 221 LATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4556666666666666666666665543
No 227
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=47.97 E-value=49 Score=26.95 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=41.2
Q ss_pred hCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccC
Q 023407 91 LGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 91 l~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d 149 (282)
+.+++++.....+-+-|+.+||.++|..++...- ++...-.++-.+|..++..+|
T Consensus 4 ~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~----~p~~~~~~V~~~I~~aldrk~ 58 (165)
T 2rg8_A 4 LDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN----LGEMKSGVPVLAVSLALEGKA 58 (165)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT----CSGGGGHHHHHHHHHHHTSCH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhC----CcccHHHHHHHHHHHHHcCCH
Confidence 3467777777777788888999999999998855 344666677777777776653
No 228
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.55 E-value=1.1e+02 Score=24.41 Aligned_cols=51 Identities=18% Similarity=0.076 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHcc
Q 023407 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYM 148 (282)
Q Consensus 94 eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~ 148 (282)
++++.....+-+-|...||.++|.+|....- .+...-.++-..|-.++...
T Consensus 6 eel~kki~~lL~EY~~~~D~~EA~~cl~EL~----~p~f~~e~V~~~i~~alE~~ 56 (152)
T 2ion_A 6 NHLVKEIDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLEST 56 (152)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT----CGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC----CCcchHHHHHHHHHHHHcCC
Confidence 4455555556666778899999999998864 23555566777777777764
No 229
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=45.11 E-value=76 Score=25.67 Aligned_cols=63 Identities=8% Similarity=-0.026 Sum_probs=34.3
Q ss_pred HHHHhhhhHHHHhCC----------HHHHHHHHHHhhccccCc-hhHHHHHHHHHHHHHHccChHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGD----------KEKALEQLKVTESKTVAV-GQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (282)
Q Consensus 98 ~a~~~la~~~~~iGd----------~~~A~k~y~~~~e~~~s~-~~~id~~l~~irv~~~~~d~~~v~~~i~kA 160 (282)
+++..+|.-+.+.|. .++|+.+|.++.+-.... .-..++-......|.+-.+|.......++|
T Consensus 37 ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA 110 (158)
T 1zu2_A 37 DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA 110 (158)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHH
Confidence 456667777777665 469999999988765432 223333333333443333433333333333
No 230
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=45.09 E-value=1.3e+02 Score=28.73 Aligned_cols=99 Identities=6% Similarity=0.073 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCH--HHHHHHHHhhhhHHHHhCCHHHHHHHHHHhh-ccccCchhHHHHHHHHHH
Q 023407 66 LDSMRTKIEDELKKLDDRIADAEENLGE--SEVREAHLAKSLFYIQIGDKEKALEQLKVTE-SKTVAVGQKMDLVFYTLQ 142 (282)
Q Consensus 66 ~~~~~~~n~~~l~~Le~~lk~~~~nl~~--eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~-e~~~s~~~~id~~l~~ir 142 (282)
+.+.++.+...+++|...|.++..+.-. .-++.-+.-+..-..+++|.++.+..|..-+ ..=.-.+.+||.-+.-||
T Consensus 56 L~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~Ir 135 (491)
T 1m1j_A 56 IDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIK 135 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999865544 5567778888888999999999999998844 445778888888775554
Q ss_pred HHHHccChHHHHHHHHHHHHHHhh
Q 023407 143 LGFFYMDFDLISKSIDKAKSLFEE 166 (282)
Q Consensus 143 v~~~~~d~~~v~~~i~kA~~~~e~ 166 (282)
+..++......-|.|.+..|+-
T Consensus 136 --vLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 136 --ALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777788888777753
No 231
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=43.00 E-value=14 Score=27.99 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=18.5
Q ss_pred HHHHHHccCChhHHHhhcCCc
Q 023407 230 VSLKQKVVDAPEILTVIGKIP 250 (282)
Q Consensus 230 ~eLk~kvl~~~e~~~~l~~~P 250 (282)
.+++.+|+.+|+|++||...|
T Consensus 22 ~~~~~~vl~dP~V~~Fl~~h~ 42 (106)
T 2k7r_A 22 EQMKEKVMKDQDVQAFLKENE 42 (106)
T ss_dssp HHHHHHHTTCHHHHHHHHHST
T ss_pred HHHHHHHHcCHHHHHHHHHCh
Confidence 347899999999999998887
No 232
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=39.60 E-value=1.9e+02 Score=26.75 Aligned_cols=62 Identities=6% Similarity=-0.129 Sum_probs=45.1
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
.++..+|-.+.-.||.+.|...+.++.+-..+ ......+=.+....|++.....++++|-.+
T Consensus 278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 278 IIYQIKAVSALVKGKTDESYQAINTGIDLEMS----WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 36777787777789999999999998887632 112122234445789999999999988876
No 233
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=37.89 E-value=1.7e+02 Score=24.83 Aligned_cols=59 Identities=15% Similarity=0.035 Sum_probs=31.7
Q ss_pred hCCHHHHHHHHHHhh-ccccCchhHHHHHHHHHHH-HHHccChHHHHHHHHHHHHHHhhCC
Q 023407 110 IGDKEKALEQLKVTE-SKTVAVGQKMDLVFYTLQL-GFFYMDFDLISKSIDKAKSLFEEGG 168 (282)
Q Consensus 110 iGd~~~A~k~y~~~~-e~~~s~~~~id~~l~~irv-~~~~~d~~~v~~~i~kA~~~~e~gg 168 (282)
.||...|++.+.... ....++...+......+|- .+-...+..+...+..++..+..|+
T Consensus 248 ~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~lk~~~ 308 (327)
T 1iqp_A 248 KGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGA 308 (327)
T ss_dssp HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 378888888887776 6666655555554444331 1111223344445555555555443
No 234
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=37.68 E-value=1.8e+02 Score=24.46 Aligned_cols=59 Identities=12% Similarity=-0.017 Sum_probs=35.7
Q ss_pred hCCHHHHHHHHHHhhc-cccCchhHHHHHHHHHHH-HHHccChHHHHHHHHHHHHHHhhCC
Q 023407 110 IGDKEKALEQLKVTES-KTVAVGQKMDLVFYTLQL-GFFYMDFDLISKSIDKAKSLFEEGG 168 (282)
Q Consensus 110 iGd~~~A~k~y~~~~e-~~~s~~~~id~~l~~irv-~~~~~d~~~v~~~i~kA~~~~e~gg 168 (282)
.||...|++.+.+... ...++...+......+|- .+-...+..+...+..++..+..|+
T Consensus 240 ~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~lk~~~ 300 (319)
T 2chq_A 240 KGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGA 300 (319)
T ss_dssp HTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 3899999999998776 666665555554444331 1112234455556666666666443
No 235
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=36.88 E-value=32 Score=25.92 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=23.3
Q ss_pred HHhhhhHHHHhCCHHHHHHHHHHhhcc
Q 023407 100 HLAKSLFYIQIGDKEKALEQLKVTESK 126 (282)
Q Consensus 100 ~~~la~~~~~iGd~~~A~k~y~~~~e~ 126 (282)
+..+|+.+.+-|-+++|++|+.++-+|
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 457899999999999999999887765
No 236
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=36.78 E-value=31 Score=33.66 Aligned_cols=54 Identities=9% Similarity=0.279 Sum_probs=39.8
Q ss_pred HHHHHHHH-HhcCCHHHHHHHHH----------hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023407 34 KGEVFSMV-KAHDMASFYETLVA----------ESVLEMDQSVLDSMRTKIEDELKKLDDRIADA 87 (282)
Q Consensus 34 ~~~ll~~i-k~~~m~~~Y~~l~~----------~~~~~~D~~~~~~~~~~n~~~l~~Le~~lk~~ 87 (282)
...+.+.+ ++..+...|..+-- ..|+++|.+.++++.....+++++|+.++.+.
T Consensus 121 ~~~L~~~L~~~~~~~~~~~~iE~pl~~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~ 185 (540)
T 4dfk_A 121 FANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRL 185 (540)
T ss_dssp HHHHHHHTTTCHHHHHHHHHTHHHHHHHHHHHHHHCBEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHhcCEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555 44456666665422 23899999999999999999999999998653
No 237
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=35.83 E-value=1.1e+02 Score=22.68 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=37.6
Q ss_pred HHHHHHhcCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhC-CHHHHHH
Q 023407 50 YETLVAESVLEMDQ-SVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIG-DKEKALE 118 (282)
Q Consensus 50 Y~~l~~~~~~~~D~-~~~~~~~~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iG-d~~~A~k 118 (282)
.+.-+.+.|++.|. .-....-.+..+++.+|...++.-...-.++|+-+.+..+..+-...| |.++|++
T Consensus 20 lq~~a~~~gfdw~~~~~~~~~~~kl~EE~gEl~eai~~~~~~~i~eELgDvLf~lv~lA~~lgiD~e~al~ 90 (95)
T 1vmg_A 20 LQSKMKEMYFEKDSQRGIYATFTWLVEEVGELAEALLSNNLDSIQEELADVIAWTVSIANLEGIDIEEALK 90 (95)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 33334444444332 113344445566666666665432223355677777776666666666 7777765
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=35.46 E-value=1.1e+02 Score=24.52 Aligned_cols=58 Identities=19% Similarity=0.084 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHH
Q 023407 74 EDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDL 136 (282)
Q Consensus 74 ~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~ 136 (282)
++-+.=|+.-+++ ..+.-|+.+.-+|-=|++.||+++|.+......+.-....|..++
T Consensus 59 ~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 59 RLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp HHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3444445554442 234679999999999999999999999999999877777776654
No 239
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=35.40 E-value=1.3e+02 Score=27.00 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=41.4
Q ss_pred hhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccC
Q 023407 90 NLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMD 149 (282)
Q Consensus 90 nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d 149 (282)
...+++++.....+-+-|...||.++|.+|....- .+...-.++-.+|-.++..++
T Consensus 4 ~~s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~----~p~~~~~~v~~~i~~~le~~~ 59 (339)
T 1ug3_A 4 ALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELA----SPSLLFIFVRHGVESTLERSA 59 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTC----CGGGHHHHHHHHHHHHTTTCH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC----CcccHHHHHHHHHHHHhCCCH
Confidence 34567777777788888889999999999988764 333555667777777777653
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=35.24 E-value=55 Score=26.94 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=41.6
Q ss_pred HHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHH
Q 023407 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLG 144 (282)
Q Consensus 97 r~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~ 144 (282)
...|...|+|-.+-|++..|.+...++..-|.-+.+.+++.+.-+..|
T Consensus 94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~ 141 (161)
T 4h7y_A 94 AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQ 141 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcC
Confidence 556778899999999999999999999999999999998888776654
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.69 E-value=2.8e+02 Score=25.68 Aligned_cols=83 Identities=12% Similarity=0.045 Sum_probs=64.1
Q ss_pred hhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhcc----ccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Q 023407 90 NLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESK----TVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 90 nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~----~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e 165 (282)
...+.+--..++.....|...||+..|...+.+++.. ...+..++......+|+...-+||..+-++.-.+-....
T Consensus 170 ~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 170 SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 3445566667888889999999999999999987632 234567788889999999999999999888888866665
Q ss_pred hCCCcch
Q 023407 166 EGGDWER 172 (282)
Q Consensus 166 ~ggdw~r 172 (282)
..+|...
T Consensus 250 ~~~d~~~ 256 (445)
T 4b4t_P 250 IKSDEAK 256 (445)
T ss_dssp HHSCHHH
T ss_pred ccCCHHH
Confidence 5455443
No 242
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=33.92 E-value=23 Score=28.86 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=28.4
Q ss_pred HHHHHHhhhhHHHHhC-----------CHHHHHHHHHHhhccccC
Q 023407 96 VREAHLAKSLFYIQIG-----------DKEKALEQLKVTESKTVA 129 (282)
Q Consensus 96 Ir~a~~~la~~~~~iG-----------d~~~A~k~y~~~~e~~~s 129 (282)
--+++..+|.-|.+.| ++++|+++|.++.+....
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 3567888999998875 899999999999987654
No 243
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=33.72 E-value=2.1e+02 Score=24.57 Aligned_cols=33 Identities=6% Similarity=-0.005 Sum_probs=20.7
Q ss_pred hCCHHHHHHHHHHhhccccCchhHHHHHHHHHH
Q 023407 110 IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQ 142 (282)
Q Consensus 110 iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~ir 142 (282)
.||.+.|++.+.++.....++...+......++
T Consensus 277 ~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~ 309 (353)
T 1sxj_D 277 SGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYI 309 (353)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 367777777777766666666666655554443
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=33.00 E-value=2.7e+02 Score=24.94 Aligned_cols=127 Identities=18% Similarity=0.220 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHH---hhccccCchhHHHHHHHHHHHHH
Q 023407 69 MRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKV---TESKTVAVGQKMDLVFYTLQLGF 145 (282)
Q Consensus 69 ~~~~n~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~---~~e~~~s~~~~id~~l~~irv~~ 145 (282)
|..+.++.+++|+.+|++ ..==|--+-+..++.-|.+.+.+++|+..... ..-..-..+.-.|+++.+|.+--
T Consensus 9 m~~~~~r~l~rl~~~I~~----G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~ 84 (312)
T 2wpv_A 9 VQAKLAKTLQRFENKIKA----GDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYD 84 (312)
T ss_dssp ---CHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc----cChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHH
Confidence 555788889999999864 00123355567777888888888888877533 21223445556676666665533
Q ss_pred HccChHHHHHHHHHHHHHHhhC--------------CCcch--------hhHHHHHHHHHHhhcccHHHHHHHhhcc
Q 023407 146 FYMDFDLISKSIDKAKSLFEEG--------------GDWER--------KNRLKVYEGLYCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 146 ~~~d~~~v~~~i~kA~~~~e~g--------------gdw~r--------rnrLkvy~gL~~l~~r~f~~AA~lfld~ 200 (282)
..+ +..-...+++.-+++..- -.|.. ...|.-.-|-.+...++|.+|-.+|+-+
T Consensus 85 ~~~-~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 85 LAE-VKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp HTT-CCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HcC-CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 322 222233444444443320 01322 1477788888888999999999999844
No 245
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=32.58 E-value=75 Score=25.40 Aligned_cols=51 Identities=10% Similarity=0.144 Sum_probs=26.5
Q ss_pred HHHHHHHHhhccccCchhHHHHHHH-------HHHHHHHccChHHHHHHHHHHHHHHh
Q 023407 115 KALEQLKVTESKTVAVGQKMDLVFY-------TLQLGFFYMDFDLISKSIDKAKSLFE 165 (282)
Q Consensus 115 ~A~k~y~~~~e~~~s~~~~id~~l~-------~irv~~~~~d~~~v~~~i~kA~~~~e 165 (282)
++..+|.++.-.+.||.+.+-|++. ..+.++..+|+..-..+|.||..++.
T Consensus 7 ~~~~aY~~~~v~tAsP~~Li~mLydgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~ 64 (145)
T 1vh6_A 7 NPYTAYQQNSVNTATPGELTLMLYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQ 64 (145)
T ss_dssp -------------CCTTHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4677888877777889988888543 44555566777777777777776663
No 246
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=32.12 E-value=1.2e+02 Score=22.88 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HhhCHHHHHHHHHhhhhHHHHhC-CHHHHHHH
Q 023407 65 VLDSMRTKIEDELKKLDDRIADAE---------ENLGESEVREAHLAKSLFYIQIG-DKEKALEQ 119 (282)
Q Consensus 65 ~~~~~~~~n~~~l~~Le~~lk~~~---------~nl~~eeIr~a~~~la~~~~~iG-d~~~A~k~ 119 (282)
|...+-.+...|+.+|...++... ..-+.+|+-+.+..+..+-...| |.+.|++.
T Consensus 39 ~~~~~~~kL~eE~gEl~e~i~~~~~~~~~~~~~~~~l~eELgDvL~~l~~LA~~lgiDle~al~~ 103 (114)
T 2q5z_A 39 QSEHYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTREL 103 (114)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTTCCSCCCGGGCTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 555566667777777777664321 12345677777766666666666 77777764
No 247
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=31.51 E-value=27 Score=21.11 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=15.3
Q ss_pred hhhHHHHhCCHHHHHHHHHH
Q 023407 103 KSLFYIQIGDKEKALEQLKV 122 (282)
Q Consensus 103 la~~~~~iGd~~~A~k~y~~ 122 (282)
-++||.++|...+|-..=.+
T Consensus 8 W~eYYrsiG~~~eAeaIe~q 27 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKT 27 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHH
Confidence 37899999999988654333
No 248
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=31.42 E-value=79 Score=24.29 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=19.3
Q ss_pred hhHHHHhCCHHHHHHHHHHhhcccc
Q 023407 104 SLFYIQIGDKEKALEQLKVTESKTV 128 (282)
Q Consensus 104 a~~~~~iGd~~~A~k~y~~~~e~~~ 128 (282)
|--.=..|++++|+..|..+.+++.
T Consensus 25 Ave~D~ag~y~eAl~lY~~Aie~l~ 49 (117)
T 2cpt_A 25 AAQEDKAGNYEEALQLYQHAVQYFL 49 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHH
Confidence 3344577999999999999887653
No 249
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=31.08 E-value=1.9e+02 Score=26.27 Aligned_cols=87 Identities=15% Similarity=0.034 Sum_probs=50.2
Q ss_pred HhhhhHHHHh----CCHHHHHHHHHHhhccccCchhHHHHHHHHHHH---HHHccChHHHHHHHHHHHHHHhhCCCcchh
Q 023407 101 LAKSLFYIQI----GDKEKALEQLKVTESKTVAVGQKMDLVFYTLQL---GFFYMDFDLISKSIDKAKSLFEEGGDWERK 173 (282)
Q Consensus 101 ~~la~~~~~i----Gd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv---~~~~~d~~~v~~~i~kA~~~~e~ggdw~rr 173 (282)
..+|..|..- +|.++|++.|.++. +|+ .+.++++-.+ +...+|+.....+..+|-. . |+.+..
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~-~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~---~-g~~~A~ 286 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA-----PGY-PASWVSLAQLLYDFPELGDVEQMMKYLDNGRA---A-DQPRAE 286 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGS-THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH---T-TCHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---C-CCHHHH
Confidence 6788888665 69999999999976 222 1222222222 2346788888777777642 2 343333
Q ss_pred hHHHHHHHHHHhh----cccHHHHHHHhhccc
Q 023407 174 NRLKVYEGLYCMS----TRNFKKAASLFLDSI 201 (282)
Q Consensus 174 nrLkvy~gL~~l~----~r~f~~AA~lfld~~ 201 (282)
+ ..|..+.. .+|+.+|...|-.+.
T Consensus 287 ~----~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 287 L----LLGKLYYEGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp H----HHHHHHHHCSSSCCCHHHHHHHHHTTT
T ss_pred H----HHHHHHHcCCCCCCCHHHHHHHHHHHh
Confidence 2 22322221 237777777777765
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=30.59 E-value=99 Score=23.73 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhhH---------------HHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHH
Q 023407 93 ESEVREAHLAKSLF---------------YIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQ 142 (282)
Q Consensus 93 ~eeIr~a~~~la~~---------------~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~ir 142 (282)
--|+|.|++++.-| -.+..|+.-|++.+.-+.+||.+.+++-.-++.-||
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElk 90 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELR 90 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Confidence 46777777776433 346778999999999999999877776665555554
No 251
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=29.83 E-value=56 Score=32.04 Aligned_cols=53 Identities=11% Similarity=0.260 Sum_probs=38.4
Q ss_pred HHHHHHHHh-cCCHHHHHHHH----------HhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023407 35 GEVFSMVKA-HDMASFYETLV----------AESVLEMDQSVLDSMRTKIEDELKKLDDRIADA 87 (282)
Q Consensus 35 ~~ll~~ik~-~~m~~~Y~~l~----------~~~~~~~D~~~~~~~~~~n~~~l~~Le~~lk~~ 87 (282)
..+.+.+++ ..+..+|..+- +..|+++|.+.++++.....+++++|+.++.+.
T Consensus 187 ~~L~~~L~~~~~l~~L~~~iE~Pl~~vLa~ME~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~ 250 (605)
T 2kfn_A 187 LKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEI 250 (605)
T ss_dssp HHHHHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHCBCBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCeEeCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445 44566664431 234899999999999999999999999998653
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=28.63 E-value=3.2e+02 Score=24.44 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH------HHHHHHHHHHHHHH-----hhCHHHHHHHHHhhhhHHHHhCCHHHHH
Q 023407 49 FYETLVAESVLEMDQSVLDSMRTKIED------ELKKLDDRIADAEE-----NLGESEVREAHLAKSLFYIQIGDKEKAL 117 (282)
Q Consensus 49 ~Y~~l~~~~~~~~D~~~~~~~~~~n~~------~l~~Le~~lk~~~~-----nl~~eeIr~a~~~la~~~~~iGd~~~A~ 117 (282)
++=.+.++.++++|++|++.+..-... +..++-.+.-.--. ..|+- .-|.-+|..|.+.|+..+|.
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp---~LH~~~a~~~~~e~~~~~A~ 154 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDP---YLHNTIGSKLLEGDFVYEAE 154 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCH---HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCH---HHHHHHHHHHhhcCCHHHHH
Confidence 445556666899999999987765433 22222222211111 22332 34778899999999999999
Q ss_pred HHHHHhhcccc--CchhHHHHHHHHH
Q 023407 118 EQLKVTESKTV--AVGQKMDLVFYTL 141 (282)
Q Consensus 118 k~y~~~~e~~~--s~~~~id~~l~~i 141 (282)
++|. +++ ++..-.+|...+.
T Consensus 155 ~H~i----~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 155 RYFM----LGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHHH----TSCHHHHHHHHHHHHHHH
T ss_pred HHHH----hCCCccHHHHHHHHHHHH
Confidence 9887 333 3445555555443
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=28.52 E-value=3.4e+02 Score=24.68 Aligned_cols=122 Identities=21% Similarity=0.186 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCH----HHHHHHHHhhhhHHHHhCCHHHHHHHHHH---hhccccCchhHHHHHHHHHHHH
Q 023407 72 KIEDELKKLDDRIADAEENLGE----SEVREAHLAKSLFYIQIGDKEKALEQLKV---TESKTVAVGQKMDLVFYTLQLG 144 (282)
Q Consensus 72 ~n~~~l~~Le~~lk~~~~nl~~----eeIr~a~~~la~~~~~iGd~~~A~k~y~~---~~e~~~s~~~~id~~l~~irv~ 144 (282)
+.++.++||+++|++ |+ =|--+-+..++.-|.+.+.+++|+...-. ..=..-..+.-.|+++.+|.|-
T Consensus 11 ~~~~~i~rl~~~I~~-----G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy 85 (336)
T 3lpz_A 11 KIERIIARLQRRIAE-----GQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTF 85 (336)
T ss_dssp HHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----CCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHH
Confidence 567778888888863 22 24456677888889999999999986433 2223355666677777777655
Q ss_pred HHccChHHHHHHHHHHHHHHhhCC--------------Ccchh--------hHHHHHHHHHHhhcccHHHHHHHhhc
Q 023407 145 FFYMDFDLISKSIDKAKSLFEEGG--------------DWERK--------NRLKVYEGLYCMSTRNFKKAASLFLD 199 (282)
Q Consensus 145 ~~~~d~~~v~~~i~kA~~~~e~gg--------------dw~rr--------nrLkvy~gL~~l~~r~f~~AA~lfld 199 (282)
-..+ +..=...++|.-+++..-. .|..+ ..|.-.-|-.+...++|.+|-..|+-
T Consensus 86 ~~~~-~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il 161 (336)
T 3lpz_A 86 RQAG-QRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL 161 (336)
T ss_dssp HHHT-CCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHcC-CCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Confidence 4432 1111234444444443311 25443 46777888888899999999999974
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=28.41 E-value=2e+02 Score=25.57 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHH-----HHcc
Q 023407 74 EDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLG-----FFYM 148 (282)
Q Consensus 74 ~~~l~~Le~~lk~~~~nl~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~-----~~~~ 148 (282)
++.++.++.+++ .+=.+-+.|..+ .+++|=.||++.|.+-..-.-...........++-.+||-- +|.|
T Consensus 14 ~~al~~~~~~VR---~~P~da~~R~~L---fqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG 87 (273)
T 1zbp_A 14 QQALELLIEAIK---ASPKDASLRSSF---IELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG 87 (273)
T ss_dssp HHHHHHHHHHHH---TCTTCHHHHHHH---HHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH---hCCcCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 345555666665 666777777665 78899999999999999887777777777777776666532 2221
Q ss_pred ChHHHHHHHHHHHHHHhh-CC--CcchhhHHHHHHHHHHhhcccHHHHHHHhhcc
Q 023407 149 DFDLISKSIDKAKSLFEE-GG--DWERKNRLKVYEGLYCMSTRNFKKAASLFLDS 200 (282)
Q Consensus 149 d~~~v~~~i~kA~~~~e~-gg--dw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~ 200 (282)
. ..+.- |+ .|... ..+++..+..|+..+|+.+=-.+
T Consensus 88 ~------------~~P~~~g~~~~w~~~----ll~Al~~~~~G~~~~A~~lr~~A 126 (273)
T 1zbp_A 88 A------------ATAKVLGENEELTKS----LVSFNLSMVSQDYEQVSELALQI 126 (273)
T ss_dssp C------------CCEECCCSCHHHHHH----HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred C------------CCCCCCCCCHHHHHH----HHHHHHHhhcCCHHHHHHHHHHH
Confidence 1 11110 11 12222 55677777888888777664443
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=26.95 E-value=2.4e+02 Score=22.52 Aligned_cols=72 Identities=10% Similarity=0.196 Sum_probs=51.8
Q ss_pred ccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHH---HHhhccccc
Q 023407 127 TVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAA---SLFLDSIST 203 (282)
Q Consensus 127 ~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA---~lfld~~~t 203 (282)
-+|...+++...++|+ -.+...++..|.-.+.+... +.+++--.--|.|+.+-..|+|.+|- +.||+.-|.
T Consensus 36 ~vs~~t~F~YAw~Lv~----S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIK----STDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHH----SSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4788888888888877 57888999999999998874 33333333457788888899998864 455555554
Q ss_pred c
Q 023407 204 F 204 (282)
Q Consensus 204 f 204 (282)
.
T Consensus 110 n 110 (144)
T 1y8m_A 110 N 110 (144)
T ss_dssp C
T ss_pred c
Confidence 3
No 256
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=26.79 E-value=2.9e+02 Score=23.28 Aligned_cols=84 Identities=11% Similarity=0.102 Sum_probs=57.5
Q ss_pred HhCCHHHHHHHHHHhh---------ccccCchh---HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCC-cchhhH
Q 023407 109 QIGDKEKALEQLKVTE---------SKTVAVGQ---KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGD-WERKNR 175 (282)
Q Consensus 109 ~iGd~~~A~k~y~~~~---------e~~~s~~~---~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggd-w~rrnr 175 (282)
..+|++.+.+...+++ ..+++..+ -.+++=.=.|+++..+|......++++.+.+...+.- ...+..
T Consensus 19 ~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s~~~~e 98 (229)
T 4b0z_A 19 DRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPSSRMGL 98 (229)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCCTTHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCCccHHH
Confidence 4578888888777753 11222211 1244555588999999999999999999999876422 245677
Q ss_pred HHHHHHHHHhhcccHHH
Q 023407 176 LKVYEGLYCMSTRNFKK 192 (282)
Q Consensus 176 Lkvy~gL~~l~~r~f~~ 192 (282)
+.+|.=|+.|.+++..+
T Consensus 99 ~~~~~LL~lL~~~~~~e 115 (229)
T 4b0z_A 99 VTGLNLLYLLSENRIAE 115 (229)
T ss_dssp HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCchH
Confidence 77777888887776543
No 257
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=26.43 E-value=2.8e+02 Score=24.07 Aligned_cols=133 Identities=19% Similarity=0.167 Sum_probs=80.1
Q ss_pred cCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhhCCCcchhhHHHHHHHHHHhhcccHHHHHHHhhccc-----c
Q 023407 128 VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSI-----S 202 (282)
Q Consensus 128 ~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ggdw~rrnrLkvy~gL~~l~~r~f~~AA~lfld~~-----~ 202 (282)
.-.-+.+|-++.-||.|++.+|+..=+.-|..++=+-| ||.-..=+..---+.+...+ .
T Consensus 73 ~~~i~vVD~vlE~Ir~gLE~n~~~~nQrRia~vkyLgE----------------LYny~lv~s~vIf~~Ly~li~fg~~~ 136 (248)
T 1uw4_B 73 DVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGE----------------LYNYRMVESAVIFRTLYSFTSFGVNP 136 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHH----------------HHHTTSSCHHHHHHHHHHHHHTTCCT
T ss_pred HHhhhhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH----------------HHHhcCCChHHHHHHHHHHHcCCCCC
Confidence 34567899999999999999998877777776655433 22211111111111111111 1
Q ss_pred ccccccccCchhHHHHHHHHHhcc-----CChHHHHHHccCChhHHHhhcC----------------Cch-----HHHHH
Q 023407 203 TFTTYELFPYDTFIFYTVLTSIIS-----LDRVSLKQKVVDAPEILTVIGK----------------IPY-----LSEFL 256 (282)
Q Consensus 203 tft~~elis~~d~a~Y~~l~aLas-----l~R~eLk~kvl~~~e~~~~l~~----------------~P~-----l~~ll 256 (282)
+...+++-+|+|+..--.+|.|+. ++|...|++ +|. |+.++.- .|. +.+++
T Consensus 137 ~~~~~~~D~p~d~FRIrLvCtLL~tcg~~f~~~~~~kk-Ld~--fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l~D~~ 213 (248)
T 1uw4_B 137 DGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRK-LDC--FLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTL 213 (248)
T ss_dssp TSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSSHHHHHH-HHH--HHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCccchhHHHHHHHHHHHHHHhcchhhHHH-HHH--HHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHH
Confidence 122357778999999999999887 999988876 332 5444321 232 34444
Q ss_pred HHHhc-----CChhHHHHHHHHhhhhhh
Q 023407 257 NSLYD-----CQYKSFFSAFGEKRSDAC 279 (282)
Q Consensus 257 ~sfy~-----~~Y~~~~~~L~~~~~~~~ 279 (282)
..+=. ..|.+--..+++++.+..
T Consensus 214 ~~lrp~~~~~~~~eEa~~~v~~le~~~~ 241 (248)
T 1uw4_B 214 ELLRPKIKLCNSLEESIRQVQDLEREFL 241 (248)
T ss_dssp HHHCTTCCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcccCCHHHHHHHHHHHHHHHH
Confidence 44311 467777777777776654
No 258
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=26.09 E-value=2e+02 Score=21.17 Aligned_cols=64 Identities=13% Similarity=0.360 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHH----HHHH------HHHHHHHHHHHHHHHHHHhh
Q 023407 28 IEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLD----SMRT------KIEDELKKLDDRIADAEENL 91 (282)
Q Consensus 28 ~~~~~a~~~ll~~ik~~~m~~~Y~~l~~~~~~~~D~~~~~----~~~~------~n~~~l~~Le~~lk~~~~nl 91 (282)
..+.+.-+.+++++..++...-+..+.++++++.+.+-.. -+++ +-++++-.||.++..+++.+
T Consensus 8 rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKImdLE~~~~~l~~el 81 (88)
T 1uuj_A 8 RQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEEF 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999889999999988877532111 1111 22566677777776655543
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=24.61 E-value=1.9e+02 Score=26.21 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH---------------HHHhhhhHHHHhCCHHHHHHHHHHhhc
Q 023407 62 DQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVRE---------------AHLAKSLFYIQIGDKEKALEQLKVTES 125 (282)
Q Consensus 62 D~~~~~~~~~~n~~~l~~Le~~lk~~~~nl~~eeIr~---------------a~~~la~~~~~iGd~~~A~k~y~~~~e 125 (282)
+..|+.......++..-..-.++-++.-..|+-+-.. ++..+..-+++.|+..+|++.|.+.+.
T Consensus 155 ~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 155 DFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 260
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=24.52 E-value=1.5e+02 Score=29.47 Aligned_cols=62 Identities=10% Similarity=-0.013 Sum_probs=50.7
Q ss_pred HHHhhhhHHHHhCCHHHHH-HHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 023407 99 AHLAKSLFYIQIGDKEKAL-EQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (282)
Q Consensus 99 a~~~la~~~~~iGd~~~A~-k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~ 163 (282)
.|...|.|..+.|+.++|. +.|.++...|... ..+.+..+.+--..|+++.+.+-.+++-..
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s---~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS---AVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4677899999999999997 9999999988643 466777788777789998888888887664
No 261
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=24.23 E-value=98 Score=28.69 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=47.2
Q ss_pred HHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHH
Q 023407 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDK 159 (282)
Q Consensus 98 ~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~k 159 (282)
.++.-+|..+.-.|+.++|.+.|.++..-..+.. .+.++.=.+|+.|.+.|.-+++.
T Consensus 311 ~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-----t~~~~~~l~F~sn~~~i~~~~~~ 367 (372)
T 3ly7_A 311 LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-----TLYWIENGIFQTSVPYVVPYLDK 367 (372)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-----HHHHHHHSSSCCCHHHHCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-----hHHHHhCceeecchhhhHHHHHh
Confidence 4677889999999999999999999987655442 57788888999999988777654
No 262
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=24.12 E-value=78 Score=30.13 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhcc-ccC-------chhHHHHHHHHHHHHHHccCh
Q 023407 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESK-TVA-------VGQKMDLVFYTLQLGFFYMDF 150 (282)
Q Consensus 93 ~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~-~~s-------~~~~id~~l~~irv~~~~~d~ 150 (282)
..+...=+.-+|.++.--+|+.+|.+++..+..+ |.. .+++.-+...+|=+.+..|..
T Consensus 216 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~ 281 (455)
T 3t5v_B 216 LDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKM 281 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCC
Confidence 3455556788999999999999999999999999 863 567777777777788888854
No 263
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=22.70 E-value=2.2e+02 Score=20.69 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------hhCHHHHHHHHHhhhhHHHHhC-CHHHHHHH
Q 023407 68 SMRTKIEDELKKLDDRIADAEE---------NLGESEVREAHLAKSLFYIQIG-DKEKALEQ 119 (282)
Q Consensus 68 ~~~~~n~~~l~~Le~~lk~~~~---------nl~~eeIr~a~~~la~~~~~iG-d~~~A~k~ 119 (282)
..-.+...++.+|...++.... .-+.+|+-+.+..+..+-...| |.+.|++.
T Consensus 22 ~~~~kL~eE~gEl~e~~~~~~~~~~~~~~~~~~i~eELgDvL~~l~~lA~~lgiDle~al~~ 83 (100)
T 2q73_A 22 HYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTHEL 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCCGGGCTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3334555666666666542211 2345777777777777777777 88877763
No 264
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=22.18 E-value=84 Score=30.50 Aligned_cols=129 Identities=15% Similarity=0.225 Sum_probs=70.8
Q ss_pred hCCHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh----hC--------CCcchhhHHH
Q 023407 110 IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE----EG--------GDWERKNRLK 177 (282)
Q Consensus 110 iGd~~~A~k~y~~~~e~~~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e----~g--------gdw~rrnrLk 177 (282)
|.+.-.-..+|.|.++-|.....-.+-.++.+.=+ +-..+|...++.|-...+ +| ..|||...+-
T Consensus 271 i~nIh~~r~S~~kL~~~~~~~~~~~~~~ls~Le~s---~WL~~i~~iL~~a~~ia~~v~~~g~sVLVhcsDGwDrT~ql~ 347 (512)
T 2yf0_A 271 IENIHVMRSSLQKLLEVNGTKGLSVNDFYSGLESS---GWLRHIKAVMDAAVFLAKAITVENASVLVHCSDGWDRTSQVC 347 (512)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCSCCHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCCCEEECTTTSSSHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHHHHhCCCeEEEECCCCccccHHHH
Confidence 56666677888888888864433344455544432 444566666665544432 32 3699987663
Q ss_pred HHH------------HHHHhhcccHHHHHHHhhccccccccccccCchhHHHHHHHHHhccCChHHHHHHccCChhHHHh
Q 023407 178 VYE------------GLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTV 245 (282)
Q Consensus 178 vy~------------gL~~l~~r~f~~AA~lfld~~~tft~~elis~~d~a~Y~~l~aLasl~R~eLk~kvl~~~e~~~~ 245 (282)
.-. |...|-.|++=.....|.+= ||-..-+- =-.||-|++|
T Consensus 348 SLaqllLDPyyRTi~GF~~LIEKEWlsfGH~F~~R---------------------~gh~~~~~------~e~SPvFlqF 400 (512)
T 2yf0_A 348 SLGSLLLDSYYRTIKGFMVLIEKDWISFGHKFSER---------------------CGQLDGDP------KEVSPVFTQF 400 (512)
T ss_dssp HHHHHHHCSGGGSHHHHHHHHHHHTTTTTCCHHHH---------------------HTSSSCCG------GGCCCHHHHH
T ss_pred HHHHHHhCccccHHHHHHHHHhhHHhhcCCchhhh---------------------cCCCCCCc------CCCCCchHHH
Confidence 321 22222222222222222211 11111010 1347999999
Q ss_pred hcC---------------CchHHHHHHHHhcCChhHHH
Q 023407 246 IGK---------------IPYLSEFLNSLYDCQYKSFF 268 (282)
Q Consensus 246 l~~---------------~P~l~~ll~sfy~~~Y~~~~ 268 (282)
|+- +..|..+....|.|+|++|+
T Consensus 401 LDcV~Ql~~QfP~~FEFne~~L~~L~dh~ys~~fgTFL 438 (512)
T 2yf0_A 401 LECVWHLTEQFPQAFEFSEAFLLQIHEHIHSCQFGNFL 438 (512)
T ss_dssp HHHHHHHHHHCTTTCSBCHHHHHHHHHHHTTTCSTTSC
T ss_pred HHHHHHHHhhCCCccccCHHHHHHHHHHhccCccCccc
Confidence 872 33488899999999999986
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=21.92 E-value=2.5e+02 Score=22.69 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHH--hhCHHHHHHHHHhhhhH---------------HHHhCCHHHHHHHHHHhhccccCchhHHHHHH
Q 023407 76 ELKKLDDRIADAEE--NLGESEVREAHLAKSLF---------------YIQIGDKEKALEQLKVTESKTVAVGQKMDLVF 138 (282)
Q Consensus 76 ~l~~Le~~lk~~~~--nl~~eeIr~a~~~la~~---------------~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~l 138 (282)
.-++++++-..+=+ +..--|+|.+++++.-| -.+..|+.-|++.++-+.+||...+++-.-++
T Consensus 50 t~EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 50 TDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 34444444443332 22346788887776543 34777899999999999999987777666665
Q ss_pred HHHH
Q 023407 139 YTLQ 142 (282)
Q Consensus 139 ~~ir 142 (282)
.-|+
T Consensus 130 qElk 133 (152)
T 2y69_E 130 QELR 133 (152)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 266
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=21.72 E-value=83 Score=31.43 Aligned_cols=31 Identities=6% Similarity=0.266 Sum_probs=28.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023407 57 SVLEMDQSVLDSMRTKIEDELKKLDDRIADA 87 (282)
Q Consensus 57 ~~~~~D~~~~~~~~~~n~~~l~~Le~~lk~~ 87 (282)
.|+++|.+.++.+.....+++++|+.++...
T Consensus 224 ~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~ 254 (698)
T 1x9m_A 224 NGFPFDTKAIEELYVELAARRSELLRKLTET 254 (698)
T ss_dssp HCEEBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEeCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999765
No 267
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=21.39 E-value=1.5e+02 Score=28.60 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=9.0
Q ss_pred HHHHhCCHHHHHHHHHHh
Q 023407 106 FYIQIGDKEKALEQLKVT 123 (282)
Q Consensus 106 ~~~~iGd~~~A~k~y~~~ 123 (282)
.|.+.||.++|++.|.++
T Consensus 745 ~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 745 AYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTCHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHc
Confidence 344455555555555443
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=20.59 E-value=5e+02 Score=23.88 Aligned_cols=95 Identities=18% Similarity=0.072 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccc------cCchhHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhh
Q 023407 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKT------VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE 166 (282)
Q Consensus 93 ~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~------~s~~~~id~~l~~irv~~~~~d~~~v~~~i~kA~~~~e~ 166 (282)
+.-+-+.+.--...|...|+..++-.+|.+++.-. +....++++|-.++-++ ..+||....++.-.|-..-+.
T Consensus 135 ~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~-~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 135 KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAA-DERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHH-hccCHHHHHHHHHHHHhcccc
Confidence 45666677788889999999999999999887432 22466777777765541 478999888888777555554
Q ss_pred CCCcchhhHHHHHHHHHHhhccc
Q 023407 167 GGDWERKNRLKVYEGLYCMSTRN 189 (282)
Q Consensus 167 ggdw~rrnrLkvy~gL~~l~~r~ 189 (282)
.|+. ++...-.|.+|..|..++
T Consensus 214 ~~~~-~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 214 VDSV-KALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp TCHH-HHHHHHHHHHHHHHHTTC
T ss_pred cccH-HHHHHHHHHHHHHHHcCC
Confidence 4444 345666888888888766
No 269
>1n1f_A Interleukin-19; cytokine, four helix bundle, immune system; HET: NAG; 1.95A {Homo sapiens} SCOP: a.26.1.3
Probab=20.30 E-value=3.4e+02 Score=21.87 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CHHHHHHHHHhhhhHHHHhCCHHHHHHHHHHhhccccCchhHHHHH
Q 023407 61 MDQSVLDSMRTKIEDELKKLDDRIADAEENL---GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLV 137 (282)
Q Consensus 61 ~D~~~~~~~~~~n~~~l~~Le~~lk~~~~nl---~~eeIr~a~~~la~~~~~iGd~~~A~k~y~~~~e~~~s~~~~id~~ 137 (282)
.++...+.+. .....+..|..+|..=.... ++++++.+...+=+.|.+.|....+.|+..+ +|+.
T Consensus 78 ~~~~~~~~vs-sLan~f~~L~~~L~~C~~~~~C~~~~~~~~~v~~ik~~f~kL~~~~g~~KAiGE-----------LDIL 145 (159)
T 1n1f_A 78 PNPKILRKIS-SIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVIHDNYDQLEVHAAAIKSLGE-----------LDVF 145 (159)
T ss_dssp CCHHHHHHHH-HHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHT-----------HHHH
T ss_pred CCccccchHH-HHHHHHHHHHHHHHhchhccCCCCcHHHHHHHHHHHHHHhcccchhhHHHHHHH-----------HHHH
Confidence 3344444333 33445677777887665555 7788889998999999999988888887765 6888
Q ss_pred HHHHHHH
Q 023407 138 FYTLQLG 144 (282)
Q Consensus 138 l~~irv~ 144 (282)
|++|.-.
T Consensus 146 l~wie~~ 152 (159)
T 1n1f_A 146 LAWINKN 152 (159)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887644
No 270
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=20.21 E-value=99 Score=20.79 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=19.7
Q ss_pred HHHHHccCChhHHHhhcCCchHHHHHHHH
Q 023407 231 SLKQKVVDAPEILTVIGKIPYLSEFLNSL 259 (282)
Q Consensus 231 eLk~kvl~~~e~~~~l~~~P~l~~ll~sf 259 (282)
++-.++..+|++.+.+.. |.+...+...
T Consensus 3 e~~~kl~~dPe~~~~m~d-P~~~~~lq~i 30 (62)
T 2lnm_A 3 EVISKIMENPDVAMAFQN-PRVQAALMEC 30 (62)
T ss_dssp HHHHHHTTSHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHcCC-HHHHHHHHHH
Confidence 556778888888887755 7776666554
Done!