BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023408
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
pdb|2Q7D|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
Length = 346
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 14/211 (6%)
Query: 32 VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
VGY L+ KK K L R +G+ V ++ +RP+ +QGP D+++HKLT
Sbjct: 21 VGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 80
Query: 84 ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKV-DVP 138
E +EY HPE VLDP AI+ L +R + + + ++ P
Sbjct: 81 NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP 140
Query: 139 RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 198
+ ++ K GLT P + K VA G+ SHE+++ ++Q L ++PP V+Q
Sbjct: 141 FMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQ 199
Query: 199 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVT 229
F+NH VL+KV++VGE+ VV+R SL + +
Sbjct: 200 NFINHNAVLYKVFVVGESYTVVQRPSLKNFS 230
>pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
pdb|2QB5|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
Length = 347
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 14/211 (6%)
Query: 32 VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
VGY L+ KK K L R +G+ V ++ +RP+ +QGP D+++HKLT
Sbjct: 22 VGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 81
Query: 84 ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKV-DVP 138
E +EY HPE VLDP AI+ L +R + + + ++ P
Sbjct: 82 NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP 141
Query: 139 RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 198
+ ++ K GLT P + K VA G+ SHE+++ ++Q L ++PP V+Q
Sbjct: 142 FMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQ 200
Query: 199 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVT 229
F+NH VL+KV++VGE+ VV+R SL + +
Sbjct: 201 NFINHNAVLYKVFVVGESYTVVQRPSLKNFS 231
>pdb|2ODT|X Chain X, Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase
Length = 328
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 14/211 (6%)
Query: 32 VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
VGY L+ KK K L R +G V ++ +RP+ +QGP D+++HKLT
Sbjct: 11 VGYWLSEKKIKKLNFQAFAELCRKRGXEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 70
Query: 84 ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKV-DVP 138
E +EY HPE VLDP AI+ L +R + + + ++ P
Sbjct: 71 NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYXEDDRICSPP 130
Query: 139 RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 198
+ ++ K GLT P + K VA G+ SHE ++ ++Q L ++PP V+Q
Sbjct: 131 FXELTSLCGDDTXRLLEKNGLTFPFICKTRVAHGT-NSHEXAIVFNQEGLNAIQPPCVVQ 189
Query: 199 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVT 229
F+NH VL+KV++VGE+ VV+R SL + +
Sbjct: 190 NFINHNAVLYKVFVVGESYTVVQRPSLKNFS 220
>pdb|1Z2N|X Chain X, Inositol 1,3,4-trisphosphate 5/6-kinase Complexed Mg2+/adp
pdb|1Z2O|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+ADPINS(1,3,4,6)P4
pdb|1Z2P|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+AMP- PcpINS(1,3,4)P3
Length = 324
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 68/140 (48%), Gaps = 8/140 (5%)
Query: 91 LEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSI 150
+ +Y + HP+V L+ +H+ S + + + + N+ + +P + + +
Sbjct: 74 MRKYEKDHPKVLFLES----SAIHDMMSSREEINALLIKNN---IPIPNSFSV-KSKEEV 125
Query: 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKV 210
++ L LP + KP A G+ +H++ + +Q + + P + Q ++NH + KV
Sbjct: 126 IQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYINHNNKIVKV 185
Query: 211 YIVGEAIKVVRRFSLPDVTK 230
+ +G +K R SLP+V +
Sbjct: 186 FCIGNTLKWQTRTSLPNVHR 205
>pdb|3EDY|A Chain A, Crystal Structure Of The Precursor Form Of Human
Tripeptidyl-Peptidase 1
Length = 544
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 111 QHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA 170
Q++ ++Q V+D + S YGK L +E ++ D+V + LTL V K L+A
Sbjct: 37 QNVERLSELVQAVSDPS-SPQYGKY-----LTLE----NVADLVRPSPLTLHTVQKWLLA 86
Query: 171 DGSAKSHELSLAYD----QYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLP 226
G+ K H + + D S+++ E L EF ++ G + ++V + + LP
Sbjct: 87 AGAQKCHSV-ITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVV----RSPHPYQLP 141
Query: 227 DVTKQDLSTSAGVFRFPRVS 246
+ G+ RFP S
Sbjct: 142 QALAPHVDFVGGLHRFPPTS 161
>pdb|3EE6|A Chain A, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
pdb|3EE6|B Chain B, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
Length = 571
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 111 QHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA 170
Q++ ++Q V+D + S YGK L +E ++ D+V + LTL V K L+A
Sbjct: 56 QNVERLSELVQAVSDPS-SPQYGKY-----LTLE----NVADLVRPSPLTLHTVQKWLLA 105
Query: 171 DGSAKSHELSLAYD----QYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLP 226
G+ K H + + D S+++ E L EF ++ G + ++V + + LP
Sbjct: 106 AGAQKCHSV-ITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVV----RSPHPYQLP 160
Query: 227 DVTKQDLSTSAGVFRFPRVS 246
+ G+ RFP S
Sbjct: 161 QALAPHVDFVGGLHRFPPTS 180
>pdb|3BT7|A Chain A, Structure Of E. Coli 5-Methyluridine Methyltransferase
Trma In Complex With 19 Nucleotide T-Arm Analogue
pdb|3BT7|B Chain B, Structure Of E. Coli 5-Methyluridine Methyltransferase
Trma In Complex With 19 Nucleotide T-Arm Analogue
Length = 369
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 24 QQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGIL---FVAIDQNRPLSDQGPFDIVLH 80
Q +S++ V + S+ + + G+ RN +L ID LS+Q ++ H
Sbjct: 70 QTKSRIRVDSFPAASELINQLMTAMIAGV-RNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 128
Query: 81 KLTGKEWRQILEEYR 95
K EWRQ E R
Sbjct: 129 KKLDDEWRQEAEALR 143
>pdb|2EXU|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Transcription Elongation Factors Spt4-Spt5ngn Domain
Length = 200
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 135 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 169
++ P+Q VIE+ + +PD+ + L +P+ PL+
Sbjct: 154 IEAPKQSVIEKFCNGVPDIYISQKLLIPVQELPLL 188
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 81 KLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQ 140
+L GK+ + + R++ P VT++ PP +++ + + Q + D++ N +V V +
Sbjct: 978 QLPGKKVSEYIAMLRRSKPGVTLISPP-PHHDIYSIEDLAQLIYDLHQINPEAQVSV--K 1034
Query: 141 LVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQE 199
LV E +I V KA + ++ G++ + A + L E VL E
Sbjct: 1035 LVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLME 1093
>pdb|4ELZ|A Chain A, Ccdbvfi:gyra14vfi
pdb|4ELZ|B Chain B, Ccdbvfi:gyra14vfi
Length = 153
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 72 QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104
Q ++ LH+LTG E +IL+EY+ E+ L
Sbjct: 115 QAILELRLHRLTGLEHEKILDEYKALLDEIAEL 147
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 23/131 (17%)
Query: 87 WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVAD------MNLSNSYGKVDVPRQ 140
WR+I+ + +T+P+V + H++ + +Q + D + SN +G +
Sbjct: 205 WREIVNDVAKTYPDVE-------LAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDEC 257
Query: 141 LVIERDASSIPDVVLK---------AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL 191
+I +P L AG + P +A +A+ A+ L+L +YSL
Sbjct: 258 AMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLL-RYSLDAN 316
Query: 192 EPPLVLQEFVN 202
+ +++ +N
Sbjct: 317 DAATAIEQAIN 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,362,195
Number of Sequences: 62578
Number of extensions: 284902
Number of successful extensions: 737
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 29
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)