Query 023408
Match_columns 282
No_of_seqs 133 out of 156
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 03:48:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 8.7E-87 1.9E-91 626.1 17.4 251 25-275 3-255 (307)
2 PLN02941 inositol-tetrakisphos 100.0 7.2E-68 1.6E-72 502.1 24.2 251 25-275 17-270 (328)
3 TIGR00768 rimK_fam alpha-L-glu 99.2 6.9E-10 1.5E-14 99.7 14.1 164 46-223 13-194 (277)
4 TIGR02144 LysX_arch Lysine bio 99.2 1E-09 2.3E-14 99.6 14.9 164 47-224 13-195 (280)
5 PRK10446 ribosomal protein S6 98.7 3.6E-07 7.7E-12 85.0 15.4 161 49-222 18-203 (300)
6 PRK01372 ddl D-alanine--D-alan 98.6 6.3E-07 1.4E-11 82.6 13.2 156 47-218 26-193 (304)
7 TIGR01205 D_ala_D_alaTIGR D-al 98.6 5.2E-07 1.1E-11 83.4 12.2 154 49-215 23-203 (315)
8 PF08443 RimK: RimK-like ATP-g 98.4 3.8E-07 8.1E-12 79.8 6.4 100 115-226 3-110 (190)
9 COG0189 RimK Glutathione synth 98.1 2.3E-05 5E-10 74.9 11.4 137 73-222 77-223 (318)
10 PRK02471 bifunctional glutamat 98.1 3.6E-05 7.9E-10 81.1 13.1 152 48-231 436-600 (752)
11 TIGR01380 glut_syn glutathione 98.1 4.9E-05 1.1E-09 71.8 12.8 159 49-226 23-228 (312)
12 PRK12458 glutathione synthetas 98.1 5.3E-05 1.1E-09 72.6 12.8 130 74-218 79-226 (338)
13 PRK12767 carbamoyl phosphate s 98.1 4.9E-05 1.1E-09 70.5 12.2 110 102-224 98-214 (326)
14 PRK14571 D-alanyl-alanine synt 98.1 3.9E-05 8.4E-10 71.2 11.3 146 49-215 24-182 (299)
15 PRK05246 glutathione synthetas 98.1 0.00011 2.4E-09 69.3 14.2 160 49-226 24-229 (316)
16 PRK07206 hypothetical protein; 98.0 9E-05 1.9E-09 71.4 12.1 101 100-213 93-208 (416)
17 PRK06019 phosphoribosylaminoim 98.0 7.8E-05 1.7E-09 71.7 11.3 151 49-214 17-191 (372)
18 PRK06849 hypothetical protein; 97.9 0.00018 3.8E-09 69.2 13.5 103 103-217 104-210 (389)
19 TIGR01161 purK phosphoribosyla 97.9 0.00014 3.1E-09 68.9 12.7 151 48-213 13-188 (352)
20 TIGR01142 purT phosphoribosylg 97.9 0.00021 4.5E-09 68.0 13.6 99 101-213 86-196 (380)
21 PRK09288 purT phosphoribosylgl 97.9 0.00018 3.8E-09 68.8 12.5 150 48-214 26-210 (395)
22 PRK01966 ddl D-alanyl-alanine 97.9 0.00022 4.7E-09 67.7 12.5 128 74-215 81-219 (333)
23 PF13535 ATP-grasp_4: ATP-gras 97.9 3.3E-05 7E-10 64.9 6.2 93 112-217 1-104 (184)
24 PRK14569 D-alanyl-alanine synt 97.8 0.00021 4.5E-09 66.8 11.9 150 49-217 27-188 (296)
25 TIGR01369 CPSaseII_lrg carbamo 97.8 0.00041 8.8E-09 75.6 15.1 107 100-219 653-770 (1050)
26 PRK05294 carB carbamoyl phosph 97.7 0.00059 1.3E-08 74.4 14.2 105 100-217 653-768 (1066)
27 TIGR03103 trio_acet_GNAT GNAT- 97.7 0.00048 1E-08 70.2 12.3 148 47-228 245-402 (547)
28 PRK14572 D-alanyl-alanine synt 97.7 0.00063 1.4E-08 65.0 12.4 124 74-215 88-228 (347)
29 PRK05586 biotin carboxylase; V 97.6 0.00077 1.7E-08 66.3 12.0 99 103-215 103-216 (447)
30 PRK08462 biotin carboxylase; V 97.6 0.00048 1E-08 67.5 10.4 142 42-215 60-218 (445)
31 PRK14016 cyanophycin synthetas 97.6 0.00025 5.5E-09 74.4 8.7 149 48-228 164-320 (727)
32 PRK02186 argininosuccinate lya 97.5 0.0013 2.8E-08 70.4 13.0 94 105-213 97-198 (887)
33 PRK14568 vanB D-alanine--D-lac 97.5 0.0014 3.1E-08 62.3 12.0 125 74-216 90-223 (343)
34 TIGR02068 cya_phycin_syn cyano 97.5 0.00049 1.1E-08 73.6 9.7 110 105-229 203-320 (864)
35 PRK12815 carB carbamoyl phosph 97.5 0.0015 3.2E-08 71.5 13.5 101 100-215 654-762 (1068)
36 PF07478 Dala_Dala_lig_C: D-al 97.3 0.00015 3.2E-09 64.8 3.3 78 134-216 6-91 (203)
37 PRK13790 phosphoribosylamine-- 97.3 0.0031 6.7E-08 61.1 12.5 136 47-216 17-164 (379)
38 PRK00885 phosphoribosylamine-- 97.3 0.0024 5.3E-08 62.1 11.5 110 90-215 77-200 (420)
39 PLN02948 phosphoribosylaminoim 97.3 0.0091 2E-07 61.4 15.5 158 27-203 20-204 (577)
40 TIGR00877 purD phosphoribosyla 97.2 0.0045 9.8E-08 60.0 12.4 107 91-213 80-200 (423)
41 PLN02735 carbamoyl-phosphate s 97.1 0.008 1.7E-07 66.1 14.1 153 49-215 600-797 (1102)
42 PRK05294 carB carbamoyl phosph 97.1 0.0034 7.4E-08 68.5 11.2 141 49-203 33-212 (1066)
43 PRK14570 D-alanyl-alanine synt 97.1 0.0023 4.9E-08 62.1 8.5 127 74-216 87-229 (364)
44 PRK06111 acetyl-CoA carboxylas 96.9 0.0038 8.3E-08 60.9 8.2 102 100-214 99-215 (450)
45 PRK06524 biotin carboxylase-li 96.8 0.0049 1.1E-07 62.5 8.9 114 91-215 118-239 (493)
46 PLN02735 carbamoyl-phosphate s 96.8 0.0087 1.9E-07 65.9 10.9 152 49-215 49-240 (1102)
47 PRK08591 acetyl-CoA carboxylas 96.8 0.0046 1E-07 60.5 8.0 102 100-215 99-216 (451)
48 TIGR01235 pyruv_carbox pyruvat 96.8 0.013 2.9E-07 64.7 12.2 104 100-216 99-217 (1143)
49 TIGR01369 CPSaseII_lrg carbamo 96.7 0.016 3.6E-07 63.3 12.4 141 49-203 32-211 (1050)
50 TIGR00514 accC acetyl-CoA carb 96.7 0.005 1.1E-07 60.6 7.8 102 100-215 99-216 (449)
51 PRK12833 acetyl-CoA carboxylas 96.6 0.0049 1.1E-07 61.3 7.0 100 103-216 106-220 (467)
52 PRK13789 phosphoribosylamine-- 96.6 0.023 5.1E-07 56.2 11.5 137 45-215 56-206 (426)
53 TIGR01435 glu_cys_lig_rel glut 96.5 0.01 2.3E-07 62.8 9.1 89 134-230 487-586 (737)
54 PRK08654 pyruvate carboxylase 96.5 0.0084 1.8E-07 60.5 7.8 103 100-216 99-217 (499)
55 PRK12815 carB carbamoyl phosph 96.5 0.018 4E-07 63.1 10.9 152 49-215 33-223 (1068)
56 PLN02257 phosphoribosylamine-- 96.4 0.027 5.8E-07 56.0 10.5 125 47-203 52-190 (434)
57 PRK06395 phosphoribosylamine-- 96.2 0.07 1.5E-06 53.0 12.2 142 46-219 54-208 (435)
58 PRK14573 bifunctional D-alanyl 96.1 0.078 1.7E-06 56.3 13.0 151 51-216 477-669 (809)
59 PRK08463 acetyl-CoA carboxylas 96.0 0.034 7.4E-07 55.6 9.0 103 100-215 98-216 (478)
60 PRK07178 pyruvate carboxylase 95.8 0.032 7E-07 55.6 7.9 102 100-215 98-215 (472)
61 PRK12999 pyruvate carboxylase; 95.7 0.015 3.2E-07 64.3 5.5 102 100-215 103-220 (1146)
62 KOG1057 Arp2/3 complex-interac 95.6 0.12 2.6E-06 55.1 11.3 186 28-225 39-262 (1018)
63 PF15632 ATPgrasp_Ter: ATP-gra 95.0 0.13 2.9E-06 49.7 9.0 117 75-204 67-209 (329)
64 TIGR02712 urea_carbox urea car 94.9 0.091 2E-06 58.6 8.5 102 100-215 98-214 (1201)
65 COG0026 PurK Phosphoribosylami 93.8 0.69 1.5E-05 45.7 11.0 140 52-206 19-184 (375)
66 PRK05784 phosphoribosylamine-- 93.4 1.8 3.9E-05 43.9 13.6 134 47-215 59-217 (486)
67 PF02655 ATP-grasp_3: ATP-gras 92.1 0.21 4.6E-06 42.6 4.3 80 114-215 2-82 (161)
68 PRK13278 purP 5-formaminoimida 91.7 0.51 1.1E-05 46.2 6.9 80 103-204 111-202 (358)
69 PRK13277 5-formaminoimidazole- 89.4 0.79 1.7E-05 45.2 6.0 65 134-213 138-218 (366)
70 COG0439 AccC Biotin carboxylas 89.3 0.8 1.7E-05 46.2 6.1 124 89-226 89-232 (449)
71 TIGR02291 rimK_rel_E_lig alpha 87.8 6.2 0.00014 38.1 10.8 105 110-225 32-177 (317)
72 COG2232 Predicted ATP-dependen 87.4 12 0.00027 36.9 12.5 153 27-215 12-196 (389)
73 COG3919 Predicted ATP-grasp en 84.0 1.1 2.3E-05 43.8 3.4 145 49-206 15-204 (415)
74 PF02955 GSH-S_ATP: Prokaryoti 83.8 0.89 1.9E-05 40.1 2.7 79 137-222 12-101 (173)
75 COG0458 CarB Carbamoylphosphat 83.3 7.1 0.00015 39.1 9.0 97 102-213 103-208 (400)
76 PF02222 ATP-grasp: ATP-grasp 83.3 0.69 1.5E-05 40.7 1.8 68 134-206 5-77 (172)
77 PF02786 CPSase_L_D2: Carbamoy 80.7 3.2 7E-05 37.4 5.2 88 115-215 1-102 (211)
78 COG1821 Predicted ATP-utilizin 76.0 25 0.00055 33.7 9.7 45 163-219 141-187 (307)
79 TIGR01016 sucCoAbeta succinyl- 73.5 2.5 5.3E-05 41.1 2.5 79 134-216 16-116 (386)
80 COG0027 PurT Formate-dependent 72.0 6.9 0.00015 38.5 5.0 141 49-204 27-201 (394)
81 COG1181 DdlA D-alanine-D-alani 70.5 88 0.0019 30.1 12.2 157 49-217 26-201 (317)
82 PRK00696 sucC succinyl-CoA syn 66.5 6.7 0.00014 38.2 3.8 69 134-205 16-106 (388)
83 PF14397 ATPgrasp_ST: Sugar-tr 49.9 61 0.0013 30.5 7.1 96 105-204 16-128 (285)
84 KOG2356 Transcriptional activa 45.1 78 0.0017 31.1 6.9 96 7-109 92-195 (366)
85 PF02065 Melibiase: Melibiase; 44.0 36 0.00077 33.9 4.7 63 37-103 163-230 (394)
86 PF03133 TTL: Tubulin-tyrosine 43.3 15 0.00032 33.9 1.8 74 136-213 42-125 (292)
87 cd01125 repA Hexameric Replica 35.9 71 0.0015 28.6 5.0 80 28-110 40-123 (239)
88 PF13481 AAA_25: AAA domain; P 34.5 39 0.00085 28.5 2.9 28 86-113 127-156 (193)
89 cd05565 PTS_IIB_lactose PTS_II 33.4 1.6E+02 0.0034 23.7 6.1 79 43-121 14-95 (99)
90 PF14972 Mito_morph_reg: Mitoc 33.0 63 0.0014 28.7 4.0 32 77-108 5-41 (165)
91 PF12122 DUF3582: Protein of u 30.7 1E+02 0.0022 25.0 4.6 45 48-97 15-60 (101)
92 PRK06067 flagellar accessory p 28.8 1.2E+02 0.0026 26.9 5.2 40 86-125 107-147 (234)
93 PF13380 CoA_binding_2: CoA bi 28.0 1.9E+02 0.0041 23.3 5.8 74 30-107 4-88 (116)
94 KOG2158 Tubulin-tyrosine ligas 27.8 25 0.00054 36.3 0.7 73 135-213 203-282 (565)
95 cd06353 PBP1_BmpA_Med_like Per 27.8 2E+02 0.0042 26.2 6.5 69 32-102 2-83 (258)
96 PF14403 CP_ATPgrasp_2: Circul 27.3 77 0.0017 32.3 4.0 150 48-206 204-388 (445)
97 PRK11303 DNA-binding transcrip 26.0 2.5E+02 0.0054 25.4 6.9 90 16-106 44-149 (328)
98 PRK10014 DNA-binding transcrip 25.1 2.9E+02 0.0062 25.2 7.2 80 26-105 61-151 (342)
99 KOG0555 Asparaginyl-tRNA synth 24.7 55 0.0012 33.4 2.4 39 183-221 257-295 (545)
100 PF06228 ChuX_HutX: Haem utili 24.6 64 0.0014 27.7 2.5 18 197-214 105-123 (141)
101 cd01122 GP4d_helicase GP4d_hel 24.6 1.2E+02 0.0026 27.2 4.5 28 86-113 127-155 (271)
102 TIGR02237 recomb_radB DNA repa 24.2 1.3E+02 0.0028 25.9 4.5 36 77-112 71-111 (209)
103 PRK04266 fibrillarin; Provisio 22.7 3.2E+02 0.0069 24.8 6.8 85 14-103 76-174 (226)
104 cd02065 B12-binding_like B12 b 22.4 2.5E+02 0.0055 21.7 5.5 20 49-68 19-38 (125)
105 PF14305 ATPgrasp_TupA: TupA-l 22.1 6.1E+02 0.013 23.2 10.1 100 111-224 16-145 (239)
106 PF13407 Peripla_BP_4: Peripla 21.6 2.2E+02 0.0048 24.6 5.5 63 32-109 1-66 (257)
107 PRK13942 protein-L-isoaspartat 20.8 1.3E+02 0.0028 26.7 3.8 24 57-80 128-151 (212)
108 TIGR02417 fruct_sucro_rep D-fr 20.8 4.2E+02 0.0092 24.0 7.4 90 16-106 43-148 (327)
109 PF01135 PCMT: Protein-L-isoas 20.7 80 0.0017 28.5 2.5 26 57-82 124-149 (209)
110 PF12058 DUF3539: Protein of u 20.0 1E+02 0.0022 24.8 2.6 19 199-217 4-24 (88)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=8.7e-87 Score=626.08 Aligned_cols=251 Identities=50% Similarity=0.823 Sum_probs=212.0
Q ss_pred cCCCcEEEEEEechhhhhccchhHHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCChHHHHHHHHHHHhCCCeEEe
Q 023408 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (282)
Q Consensus 25 ~~~~~~~VGy~l~~KK~~sf~~~~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI 104 (282)
..+++++|||||++||+++|+|++|+.+|+++||+||+||+++||++||||||||||+||..|+++||+|+++||+++||
T Consensus 3 ~~~~~~~VGy~l~~kK~~~~~~~~~~~~~~~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v~vi 82 (307)
T PF05770_consen 3 TQRKRFRVGYALSPKKQKSFIQPSFIDLARSRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEVVVI 82 (307)
T ss_dssp GGGTT-EEEEE--HHHHHHHCCCHHCCCCCCCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTSEEE
T ss_pred ccccceEEEEEECHHHHHHhhHHHHHHHHHhcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCeEEE
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEec
Q 023408 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (282)
Q Consensus 105 DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~ 184 (282)
||+++|++|+||.+|++.|++++.....+.|++|+|++++++.+++.+.++++||+||+||||++||||++||+|+||||
T Consensus 83 Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~ 162 (307)
T PF05770_consen 83 DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFN 162 (307)
T ss_dssp T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-S
T ss_pred cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEEC
Confidence 99999999999999999999988777778999999999987778889999999999999999999999999999999999
Q ss_pred cCccCCCCCceeEEEeeeccceEEEEEEEcceEEEEEecCCCCCCccccccCCcceecccccccccCCCCCCCC--CCcc
Q 023408 185 QYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLD--PCVA 262 (282)
Q Consensus 185 ~~gL~~L~~P~VlQEFINH~gvLfKVYVIGd~v~vv~R~SLpN~~~~~~~~~~g~~~f~~vS~~~~~~~~~~~~--~~~~ 262 (282)
++||++|++|||+||||||||+|||||||||+++|++||||||++.++.....+.|+|+++|+++++++.+.+| +..+
T Consensus 163 ~~gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~ 242 (307)
T PF05770_consen 163 EEGLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQV 242 (307)
T ss_dssp GGGGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTT
T ss_pred HHHHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccc
Confidence 99999999999999999999999999999999999999999999999887778899999999999999988877 7789
Q ss_pred cCCchhHHhhccc
Q 023408 263 VCTKCSFLCDGAS 275 (282)
Q Consensus 263 e~pp~~~~~~~a~ 275 (282)
++||.++++++|.
T Consensus 243 ~~p~~~~v~~la~ 255 (307)
T PF05770_consen 243 EMPPDELVEKLAK 255 (307)
T ss_dssp TS--HHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 9999999999985
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=7.2e-68 Score=502.06 Aligned_cols=251 Identities=72% Similarity=1.069 Sum_probs=236.8
Q ss_pred cCCCcEEEEEEechhhhhccchhHHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCChHHHHHHHHHHHhCCCeEEe
Q 023408 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (282)
Q Consensus 25 ~~~~~~~VGy~l~~KK~~sf~~~~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI 104 (282)
...++++|||||++||+++|+|++|+.+|+++||+|++||+++||++||||||||||+++..|++.+++|..+||+++||
T Consensus 17 ~~~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv~vi 96 (328)
T PLN02941 17 SQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDVTVL 96 (328)
T ss_pred ccCCceEEEEEECHHHHHHHhhHHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCCcEEE
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEec
Q 023408 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (282)
Q Consensus 105 DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~ 184 (282)
||+++|+.++||..|++.|.+++.++++..|++|+++++.+...++...+..++++||+||||++||||+.+|.|++|++
T Consensus 97 dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~ 176 (328)
T PLN02941 97 DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYD 176 (328)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecC
Confidence 99999999999999999999988777777899999999975544455556789999999999999999999999999999
Q ss_pred cCccCCCCCceeEEEeeeccceEEEEEEEcceEEEEEecCCCCCCccccccCCcceecccccccccCCCCCC---CCCCc
Q 023408 185 QYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD---LDPCV 261 (282)
Q Consensus 185 ~~gL~~L~~P~VlQEFINH~gvLfKVYVIGd~v~vv~R~SLpN~~~~~~~~~~g~~~f~~vS~~~~~~~~~~---~~~~~ 261 (282)
++||..|++||++||||||+|++||||||||++.++.|+|+||+..++.....|.++|++|||+++.++.+. +|+..
T Consensus 177 ~~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~ 256 (328)
T PLN02941 177 QEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEV 256 (328)
T ss_pred HHHHHhcCCcEEEEEecCCCCEEEEEEEECCEEEEEEecCCccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999887777889999999999999998887 78888
Q ss_pred ccCCchhHHhhccc
Q 023408 262 AVCTKCSFLCDGAS 275 (282)
Q Consensus 262 ~e~pp~~~~~~~a~ 275 (282)
+++|+.+++++||.
T Consensus 257 ~~~p~~~~l~~La~ 270 (328)
T PLN02941 257 AELPPRPFLEDLAR 270 (328)
T ss_pred ccCCChHHHHHHHH
Confidence 99999999999984
No 3
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.16 E-value=6.9e-10 Score=99.66 Aligned_cols=164 Identities=18% Similarity=0.284 Sum_probs=116.6
Q ss_pred hhHHHhHHHhcCcEEEEecCCCC---CCC----CCCceEEEeccCChHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHH
Q 023408 46 QPKLEGLARNKGILFVAIDQNRP---LSD----QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQS 118 (282)
Q Consensus 46 ~~~l~~~~~~~Gi~fV~ID~~~p---L~~----QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~ai~~L~nR~~ 118 (282)
.+.+...++++|+.+..+|.+.. +.+ ...+|+|+=+..+......+.+..+.. .+.++.++++++...|+..
T Consensus 13 ~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~dK~~ 91 (277)
T TIGR00768 13 EKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESL-GVPVINSSDAILNAGDKFL 91 (277)
T ss_pred HHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHHC-CCeeeCCHHHHHHHhhHHH
Confidence 34577889999999988887542 222 336899987773322223444444444 5778899999999999999
Q ss_pred HHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------C
Q 023408 119 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------L 191 (282)
Q Consensus 119 ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L 191 (282)
+++.+++. .+.+|+++.+. +.+++.+.+ ..+.||+|+||..++|+ ..+.++.+.+.+.. .
T Consensus 92 ~~~~l~~~-------gi~~P~t~~~~-~~~~~~~~~--~~~~~p~vvKP~~g~~g---~gv~~i~~~~~l~~~~~~~~~~ 158 (277)
T TIGR00768 92 TSQLLAKA-------GLPQPRTGLAG-SPEEALKLI--EEIGFPVVLKPVFGSWG---RLVSLARDKQAAETLLEHFEQL 158 (277)
T ss_pred HHHHHHHC-------CCCCCCEEEeC-CHHHHHHHH--HhcCCCEEEEECcCCCC---CceEEEcCHHHHHHHHHHHHHh
Confidence 99998864 36789998885 222222223 24679999999997764 56667888776642 2
Q ss_pred C---CceeEEEeeeccc-eEEEEEEEcceEEEEEec
Q 023408 192 E---PPLVLQEFVNHGG-VLFKVYIVGEAIKVVRRF 223 (282)
Q Consensus 192 ~---~P~VlQEFINH~g-vLfKVYVIGd~v~vv~R~ 223 (282)
. .++++||||++.+ .-+.|+|+|+++..+.++
T Consensus 159 ~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r 194 (277)
T TIGR00768 159 NGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYR 194 (277)
T ss_pred cccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEE
Confidence 2 3899999999874 889999999988764443
No 4
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.15 E-value=1e-09 Score=99.60 Aligned_cols=164 Identities=17% Similarity=0.260 Sum_probs=113.0
Q ss_pred hHHHhHHHhcCcEEEEecCCCC---CC---CC-CCceEEEeccCChHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHH
Q 023408 47 PKLEGLARNKGILFVAIDQNRP---LS---DQ-GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSM 119 (282)
Q Consensus 47 ~~l~~~~~~~Gi~fV~ID~~~p---L~---~Q-gpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~ai~~L~nR~~m 119 (282)
+.+...++++|++...+|.+.. +. .+ .++|+++=+-........+....+.+ ++.++.|+++++...|+..+
T Consensus 13 ~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~-g~~~~n~~~~~~~~~dK~~~ 91 (280)
T TIGR02144 13 KMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEAL-GVPVINSSHVIEACGDKIFT 91 (280)
T ss_pred HHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHC-CCcEECcHHHHHHHhhHHHH
Confidence 3466788999999998877642 11 12 36898776532211111222333333 57889999999999999999
Q ss_pred HHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC---------
Q 023408 120 LQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK--------- 190 (282)
Q Consensus 120 l~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~--------- 190 (282)
++.+++. .|.+|+.+.+. +..++.+. ...+.||+|+||...+| +..+.++.+.+.+..
T Consensus 92 ~~~l~~~-------gip~P~t~~~~-~~~~~~~~--~~~~~~P~vvKP~~g~~---g~gv~~v~~~~~l~~~~~~~~~~~ 158 (280)
T TIGR02144 92 YLKLAKA-------GVPTPRTYLAF-DREAALKL--AEALGYPVVLKPVIGSW---GRLVALIRDKDELESLLEHKEVLG 158 (280)
T ss_pred HHHHHHC-------CcCCCCeEeeC-CHHHHHHH--HHHcCCCEEEEECcCCC---cCCEEEECCHHHHHHHHHHHHhhc
Confidence 9988764 47789988774 22222222 23468999999998655 566888888776542
Q ss_pred --CCCceeEEEeeeccceEEEEEEEcceEE-EEEecC
Q 023408 191 --LEPPLVLQEFVNHGGVLFKVYIVGEAIK-VVRRFS 224 (282)
Q Consensus 191 --L~~P~VlQEFINH~gvLfKVYVIGd~v~-vv~R~S 224 (282)
...|+++||||.+.+.-+.+||+|+++. .+.|.+
T Consensus 159 ~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~ 195 (280)
T TIGR02144 159 GSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS 195 (280)
T ss_pred CCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC
Confidence 2358999999998788899999999865 455655
No 5
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.74 E-value=3.6e-07 Score=85.03 Aligned_cols=161 Identities=18% Similarity=0.249 Sum_probs=110.0
Q ss_pred HHhHHHhcCcEEEEecCCCC---CC-----------CCCCceEEEeccCCh--HHHHHHHHHHHhCCCeEEeCchhHHhh
Q 023408 49 LEGLARNKGILFVAIDQNRP---LS-----------DQGPFDIVLHKLTGK--EWRQILEEYRQTHPEVTVLDPPYAIQH 112 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~p---L~-----------~QgpfDvILHKltd~--~~~~~lq~y~~~hP~v~VIDP~~ai~~ 112 (282)
+...++++|++.+.+|.+.. +. ...++|+++=.+... ......++..+.. ++.++.++.+++.
T Consensus 18 ~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~le~~-g~~v~n~~~a~~~ 96 (300)
T PRK10446 18 LREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEML-GSYPLNESVAIAR 96 (300)
T ss_pred HHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHHHHHHC-CCceecCHHHHHh
Confidence 66677899999999998752 21 123789888765432 2222223333333 3677888899999
Q ss_pred hcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccC---
Q 023408 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK--- 189 (282)
Q Consensus 113 L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~--- 189 (282)
..|+..+.+.+.+. .+.+|+...+. +..++.+.+. .-..||+|+||....| |..+.++.+++.+.
T Consensus 97 ~~dK~~~~~~l~~~-------gip~P~t~~~~-~~~~~~~~~~-~~~~~P~VvKP~~g~~---g~GV~~v~~~~~~~~~~ 164 (300)
T PRK10446 97 ARDKLRSMQLLARQ-------GIDLPVTGIAH-SPDDTSDLID-MVGGAPLVVKLVEGTQ---GIGVVLAETRQAAESVI 164 (300)
T ss_pred hhcHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHHHH-HhCCCCEEEEECCCCC---cccEEEEcCHHHHHHHH
Confidence 99999999998864 46789887774 2222222222 2236999999998754 55666776655443
Q ss_pred ----CCCCceeEEEeeecc-ceEEEEEEEcceEE-EEEe
Q 023408 190 ----KLEPPLVLQEFVNHG-GVLFKVYIVGEAIK-VVRR 222 (282)
Q Consensus 190 ----~L~~P~VlQEFINH~-gvLfKVYVIGd~v~-vv~R 222 (282)
....++++||||++. |.=+-|+|+|+++. ++.|
T Consensus 165 ~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r 203 (300)
T PRK10446 165 DAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIER 203 (300)
T ss_pred HHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEE
Confidence 345689999999874 88999999998754 4555
No 6
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.62 E-value=6.3e-07 Score=82.65 Aligned_cols=156 Identities=17% Similarity=0.225 Sum_probs=112.4
Q ss_pred hHHHhHHHhcCcEEEEecCCCCCCC---CCCceEEEeccCCh-HHHHHHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHH
Q 023408 47 PKLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGK-EWRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQ 121 (282)
Q Consensus 47 ~~l~~~~~~~Gi~fV~ID~~~pL~~---QgpfDvILHKltd~-~~~~~lq~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~ 121 (282)
..+....++.|++.+.||.+..+.+ ...+|+|+=-+.+. .-...++.+.+.+ ++.++-+ ..++....|+..+.+
T Consensus 26 ~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~-gi~~~g~~~~~~~~~~dK~~~k~ 104 (304)
T PRK01372 26 AAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELL-GIPYTGSGVLASALAMDKLRTKL 104 (304)
T ss_pred HHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCCCCCccHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHH
Confidence 3466777999999999988876654 34689988654221 0012344555555 7888766 789999999999998
Q ss_pred HHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCc
Q 023408 122 CVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPP 194 (282)
Q Consensus 122 ~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L~~P 194 (282)
.+.+. .|.+|+++.++.. ++..+. ...+.||+|+||....|+ ..+.++.+.+.+.. ...+
T Consensus 105 ~l~~~-------gIp~p~~~~~~~~-~~~~~~--~~~~~~P~ivKP~~g~~s---~Gv~~v~~~~el~~~~~~~~~~~~~ 171 (304)
T PRK01372 105 VWQAA-------GLPTPPWIVLTRE-EDLLAA--IDKLGLPLVVKPAREGSS---VGVSKVKEEDELQAALELAFKYDDE 171 (304)
T ss_pred HHHHC-------CCCCCCEEEEeCc-chHHHH--HhhcCCCEEEeeCCCCCC---CCEEEeCCHHHHHHHHHHHHhcCCc
Confidence 88764 4778999988632 222222 246799999999997765 45778888777642 2568
Q ss_pred eeEEEeeeccceEEEEEEEcceEE
Q 023408 195 LVLQEFVNHGGVLFKVYIVGEAIK 218 (282)
Q Consensus 195 ~VlQEFINH~gvLfKVYVIGd~v~ 218 (282)
+++||||+ |.=|-|.|+||.+.
T Consensus 172 ~lvEe~i~--G~E~~v~vi~~~~~ 193 (304)
T PRK01372 172 VLVEKYIK--GRELTVAVLGGKAL 193 (304)
T ss_pred EEEEcccC--CEEEEEEEECCCcc
Confidence 99999998 77888999998654
No 7
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.60 E-value=5.2e-07 Score=83.45 Aligned_cols=154 Identities=16% Similarity=0.235 Sum_probs=107.4
Q ss_pred HHhHHHhcCcEEEEecCCCC-------CC-------CC-CCceEEEeccCChH-HHHHHHHHHHhCCCeEEeCc-hhHHh
Q 023408 49 LEGLARNKGILFVAIDQNRP-------LS-------DQ-GPFDIVLHKLTGKE-WRQILEEYRQTHPEVTVLDP-PYAIQ 111 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~p-------L~-------~Q-gpfDvILHKltd~~-~~~~lq~y~~~hP~v~VIDP-~~ai~ 111 (282)
+....+++|++++.+|.+.. +. .+ ..+|+|+-=+.+.. -...++...+.+ ++.++-+ +.++.
T Consensus 23 i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~-gip~~g~~~~~~~ 101 (315)
T TIGR01205 23 VLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGEDGTIQGLLELM-GIPYTGSGVLASA 101 (315)
T ss_pred HHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCCcHHHHHHHHc-CCCccCCCHHHHH
Confidence 55667889999999998861 11 11 47899997443220 012334444444 6777765 78999
Q ss_pred hhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHH---HHhcCCccceEeeeccccCCCCceeEEEEeccCcc
Q 023408 112 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDV---VLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSL 188 (282)
Q Consensus 112 ~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~---l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL 188 (282)
...|+..+.+.+++. .|.+|+++.+..+..+..+. .....+.||+|+||....| |..+.++.+.+.|
T Consensus 102 ~~~dK~~~~~~l~~~-------gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~---s~Gv~~v~~~~el 171 (315)
T TIGR01205 102 LSMDKLLTKLLWKAL-------GLPTPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREGS---SVGVSKVKSEEEL 171 (315)
T ss_pred HHHCHHHHHHHHHHC-------CCCCCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCCC---ccCEEEECCHHHH
Confidence 999999999998864 47789999886222211111 1124689999999988765 4568899998777
Q ss_pred CC-------CCCceeEEEeeeccceEEEEEEEcc
Q 023408 189 KK-------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 189 ~~-------L~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
.. ...++++||||+ |.=|-|.|+|+
T Consensus 172 ~~~~~~~~~~~~~~lvEe~i~--G~e~~v~vi~~ 203 (315)
T TIGR01205 172 QAALDEAFEYDEEVLVEQFIK--GRELEVSILGN 203 (315)
T ss_pred HHHHHHHHhcCCcEEEEcCCC--CEEEEEEEECC
Confidence 53 356899999995 88999999994
No 8
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.44 E-value=3.8e-07 Score=79.78 Aligned_cols=100 Identities=27% Similarity=0.449 Sum_probs=53.8
Q ss_pred CHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC----
Q 023408 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK---- 190 (282)
Q Consensus 115 nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~---- 190 (282)
|+..+++.|.+. .+.+|+..++.+ ..+..+.+.+.+ .+|+|.||+..++ ...+.++-+.+.+..
T Consensus 3 dK~~~~~~l~~~-------gipvP~t~~~~~-~~~~~~~~~~~~-~~p~ViKp~~g~~---G~gV~~i~~~~~~~~~l~~ 70 (190)
T PF08443_consen 3 DKLLTLQLLAKA-------GIPVPETRVTNS-PEEAKEFIEELG-GFPVVIKPLRGSS---GRGVFLINSPDELESLLDA 70 (190)
T ss_dssp BHHHHHHHHHHT-------T-----EEEESS-HHHHHHHHHHH---SSEEEE-SB----------EEEESHCHHHHHHH-
T ss_pred CHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHHHHHhc-CCCEEEeeCCCCC---CCEEEEecCHHHHHHHHHH
Confidence 566677777653 477899988853 333344455555 9999999987543 567788888776653
Q ss_pred ---CCCceeEEEeeeccc-eEEEEEEEcceEEEEEecCCC
Q 023408 191 ---LEPPLVLQEFVNHGG-VLFKVYIVGEAIKVVRRFSLP 226 (282)
Q Consensus 191 ---L~~P~VlQEFINH~g-vLfKVYVIGd~v~vv~R~SLp 226 (282)
...|+++|+||.+.+ .-+.|||||+++....|.+-+
T Consensus 71 ~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~ 110 (190)
T PF08443_consen 71 FKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSP 110 (190)
T ss_dssp ----TTT-EEEE----SS---EEEEEETTEEEEEEE----
T ss_pred HHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecC
Confidence 467999999999985 999999999999876655544
No 9
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=2.3e-05 Score=74.85 Aligned_cols=137 Identities=20% Similarity=0.257 Sum_probs=99.8
Q ss_pred CCceEEEeccCChHHH-HHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCch
Q 023408 73 GPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (282)
Q Consensus 73 gpfDvILHKltd~~~~-~~lq~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~ 151 (282)
..+|+++=.-+...-. -.+-+.. +.=.+.||+|+++++...|..-.++.+... .+.+|+-+++... .+..
T Consensus 77 ~~~D~i~~R~~~~~~~~~~~~~~~-E~~G~~viN~p~~i~~~~nK~~~~~~l~~~-------~ipvP~T~i~~~~-~~~~ 147 (318)
T COG0189 77 DELDVIIMRKDPPFDFATRFLRLA-ERKGVPVINDPQSIRRCRNKLYTTQLLAKA-------GIPVPPTLITRDP-DEAA 147 (318)
T ss_pred ccCCEEEEecCCchhhHHHHHHHH-HHcCCeEECCHHHHHhhhhHHHHHHHHHhc-------CCCCCCEEEEcCH-HHHH
Confidence 3789888776654222 1111222 223799999999999999999988887753 5678999988532 3333
Q ss_pred HHHHhcCCccceEeeeccccCCCCceeEEEEeccC-ccCCC----C----CceeEEEeeeccceEEEEEEEcceEEEEEe
Q 023408 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY-SLKKL----E----PPLVLQEFVNHGGVLFKVYIVGEAIKVVRR 222 (282)
Q Consensus 152 ~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~-gL~~L----~----~P~VlQEFINH~gvLfKVYVIGd~v~vv~R 222 (282)
. ..+..+.||+|.||+-++|. .....+-+.+ .|.++ . -++++||||+=...=.|.|+|||...+..+
T Consensus 148 ~-~~~~~~g~pvVlKp~~Gs~G---~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y 223 (318)
T COG0189 148 E-FVAEHLGFPVVLKPLDGSGG---RGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIY 223 (318)
T ss_pred H-HHHHhcCCCEEEeeCCCCCc---cceEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEe
Confidence 3 33556889999999998875 4556667766 54432 1 369999999999999999999999998876
No 10
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.10 E-value=3.6e-05 Score=81.13 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=103.3
Q ss_pred HHHhHHHhcCcEEEEecCCCCCC---CCCCceEEEeccCChHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHH
Q 023408 48 KLEGLARNKGILFVAIDQNRPLS---DQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVA 124 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~---~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~ 124 (282)
.++..|.++|+.+..+|.+..+- ..+..+.+..- ...-.|+..++....|+..+.+.|.
T Consensus 436 ~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~~------------------~~t~~~s~~s~~~~~DK~~tk~lL~ 497 (752)
T PRK02471 436 ILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKNG------------------NMTSKDNYISPLIMENKVVTKKILA 497 (752)
T ss_pred HHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEec------------------cccCCCHHHHHHHhhCHHHHHHHHH
Confidence 46678899999999999865432 22334443321 2345677777777789998888887
Q ss_pred hccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEE---eccCccC-------CCCCc
Q 023408 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA---YDQYSLK-------KLEPP 194 (282)
Q Consensus 125 ~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maiv---f~~~gL~-------~L~~P 194 (282)
+. .|.+|++.++.. .++....+. .-+.||+|+||....++. ...++ .+.+.+. .....
T Consensus 498 ~~-------GIpvP~~~~~~~-~e~a~~~~~-~~~g~PvVVKP~~g~~G~---GV~~~~~~~~~eel~~A~~~a~~~~~~ 565 (752)
T PRK02471 498 EA-------GFPVPAGDEFTS-LEEALADYS-LFADKAIVVKPKSTNFGL---GISIFKEPASLEDYEKALEIAFREDSS 565 (752)
T ss_pred HC-------CcCCCCEEEEcC-HHHHHHHHH-HhcCCCEEEEECCCCCcC---CeEEecCcCCHHHHHHHHHHHHhcCCc
Confidence 63 478899988852 222222222 113799999999876643 44444 3334332 22468
Q ss_pred eeEEEeeeccceEEEEEEEcceEEEEEecCCCCCCcc
Q 023408 195 LVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQ 231 (282)
Q Consensus 195 ~VlQEFINH~gvLfKVYVIGd~v~vv~R~SLpN~~~~ 231 (282)
+++||||. |.=|-|+|||+++..+.+.--+++.-+
T Consensus 566 vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V~GD 600 (752)
T PRK02471 566 VLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANVVGD 600 (752)
T ss_pred EEEEeccc--CCEEEEEEECCEEEEEEEEeCCccccC
Confidence 99999995 899999999999988877777777644
No 11
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.10 E-value=4.9e-05 Score=71.75 Aligned_cols=159 Identities=18% Similarity=0.251 Sum_probs=98.7
Q ss_pred HHhHHHhcCcEEEEecCCCCC-------------------------CCC-----CCceEEEeccCC---hHH--HHHHHH
Q 023408 49 LEGLARNKGILFVAIDQNRPL-------------------------SDQ-----GPFDIVLHKLTG---KEW--RQILEE 93 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL-------------------------~~Q-----gpfDvILHKltd---~~~--~~~lq~ 93 (282)
|...|+++|.+..-++++.-. .+. ..||+|+-+-.. ..+ ...+-+
T Consensus 23 L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~~~~l~ 102 (312)
T TIGR01380 23 LMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDAVLMRKDPPFDMEYIYATYLLE 102 (312)
T ss_pred HHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCEEEEeCCCCCChhhhHHHHHHH
Confidence 666788888888776665310 000 267877766421 122 223444
Q ss_pred HHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCC
Q 023408 94 YRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGS 173 (282)
Q Consensus 94 y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gs 173 (282)
+.+.. ++.|+.|+++++.-.|+..+++... .+|+.++.+ +..++.+-+.+.| |+|+||+.+.|.
T Consensus 103 ~le~~-g~~viN~p~~i~~~~dK~~~~~~~~-----------~vP~T~v~~-~~~~~~~~~~~~g---~vVvKPl~G~~G 166 (312)
T TIGR01380 103 LADPT-GTLVINSPQGLRDANEKLFTLQFPK-----------VIPPTLVTR-DKAEIRAFLAEHG---DIVLKPLDGMGG 166 (312)
T ss_pred HHHhC-CCeEEeCHHHHHhhhhHHHHhhCcC-----------CCCCEEEeC-CHHHHHHHHHHcC---CEEEEECCCCCC
Confidence 44443 6889999999998888776655321 378876543 4334444444455 899999998775
Q ss_pred CCceeEEEEec-cCcc-------CCC-CCceeEEEeeec-cceEEEEEEEcceEE--EEEecCCC
Q 023408 174 AKSHELSLAYD-QYSL-------KKL-EPPLVLQEFVNH-GGVLFKVYIVGEAIK--VVRRFSLP 226 (282)
Q Consensus 174 a~SH~Maivf~-~~gL-------~~L-~~P~VlQEFINH-~gvLfKVYVIGd~v~--vv~R~SLp 226 (282)
. .+..+-. ...+ ..+ ..|+++|+||+. .+-=+-|+|||+++. ...|.+-+
T Consensus 167 ~---gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv~~ai~R~~~~ 228 (312)
T TIGR01380 167 E---GIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPIGAAVARIPAG 228 (312)
T ss_pred c---eEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEEEEEEEecCCC
Confidence 3 3343433 2222 122 359999999985 235689999999963 56675544
No 12
>PRK12458 glutathione synthetase; Provisional
Probab=98.08 E-value=5.3e-05 Score=72.59 Aligned_cols=130 Identities=13% Similarity=0.183 Sum_probs=82.9
Q ss_pred CceEEEeccCC---hHHHHHHHH------HHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEc
Q 023408 74 PFDIVLHKLTG---KEWRQILEE------YRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE 144 (282)
Q Consensus 74 pfDvILHKltd---~~~~~~lq~------y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~ 144 (282)
.||+|+++-.. .....+++. ...+...+.++.++++++...|+..+++..+ +.+|+.++..
T Consensus 79 ~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~~----------~~vP~T~v~~ 148 (338)
T PRK12458 79 GFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFPE----------EVRPTTHISR 148 (338)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhcc----------CCCCCEEEeC
Confidence 58999998643 223333331 1222347899999999999999887644311 3578887664
Q ss_pred cCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCc--cCCC------CCceeEEEeeecc-ceEEEEEEEcc
Q 023408 145 RDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS--LKKL------EPPLVLQEFVNHG-GVLFKVYIVGE 215 (282)
Q Consensus 145 ~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~g--L~~L------~~P~VlQEFINH~-gvLfKVYVIGd 215 (282)
+.+++.+.+.+.| ..|+|+||+...|+. ...++.+.+. +..+ ..|+++|+||... +-=.-|+|+|+
T Consensus 149 -~~~~~~~~~~~~~-~~pvVvKPl~G~gG~---gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~g 223 (338)
T PRK12458 149 -NKEYIREFLEESP-GDKMILKPLQGSGGQ---GVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLNG 223 (338)
T ss_pred -CHHHHHHHHHHcC-CCeEEEEECCCCCcc---CeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEECC
Confidence 3333333333332 235999999987754 4445554442 3211 4599999999852 45688999999
Q ss_pred eEE
Q 023408 216 AIK 218 (282)
Q Consensus 216 ~v~ 218 (282)
++.
T Consensus 224 ~~v 226 (338)
T PRK12458 224 EPL 226 (338)
T ss_pred EEE
Confidence 888
No 13
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.08 E-value=4.9e-05 Score=70.52 Aligned_cols=110 Identities=23% Similarity=0.360 Sum_probs=75.5
Q ss_pred EEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEE
Q 023408 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (282)
Q Consensus 102 ~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Mai 181 (282)
++..++++++...|+..|.+.+.+. .+.+|+++.+++ .+++.+.+....+.||+|+||....| +..+.+
T Consensus 98 ~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~-~~~~~~~~~~~~~~~P~viKP~~g~~---s~gv~~ 166 (326)
T PRK12767 98 VLVSSKEVIEICNDKWLTYEFLKEN-------GIPTPKSYLPES-LEDFKAALAKGELQFPLFVKPRDGSA---SIGVFK 166 (326)
T ss_pred EEeCCHHHHHHHhcHHHHHHHHHHc-------CCCCCCEEcccC-HHHHHhhhhcccCCCCEEEEeCCCCC---ccCeEE
Confidence 4577899999999999999998875 366899887752 22222222235789999999966554 567888
Q ss_pred EeccCccCCC---CCceeEEEeeeccceEEEEEEE----cceEEEEEecC
Q 023408 182 AYDQYSLKKL---EPPLVLQEFVNHGGVLFKVYIV----GEAIKVVRRFS 224 (282)
Q Consensus 182 vf~~~gL~~L---~~P~VlQEFINH~gvLfKVYVI----Gd~v~vv~R~S 224 (282)
+.+.+.|... ..++++|||| .|.-|-+-++ |..+.+..+..
T Consensus 167 v~~~~el~~~~~~~~~~lvqeyi--~G~e~~v~~~~~~~G~~~~~~~~~~ 214 (326)
T PRK12767 167 VNDKEELEFLLEYVPNLIIQEFI--EGQEYTVDVLCDLNGEVISIVPRKR 214 (326)
T ss_pred eCCHHHHHHHHHhCCCeEEEecc--CCceEEEEEEEcCCCCEEEEEEeee
Confidence 9887777522 2499999999 4555555444 34444454443
No 14
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=98.07 E-value=3.9e-05 Score=71.21 Aligned_cols=146 Identities=15% Similarity=0.203 Sum_probs=104.0
Q ss_pred HHhHHHhcCcEEEEecCCCCCC----CCCCceEEEeccCChH-HHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHH
Q 023408 49 LEGLARNKGILFVAIDQNRPLS----DQGPFDIVLHKLTGKE-WRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQC 122 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL~----~QgpfDvILHKltd~~-~~~~lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~ 122 (282)
+....++.|.+.+.+|.+..+. +...+|+++--+.+.. -...++.+.+.+ +++++ .++.++....|+..+.+.
T Consensus 24 i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~~-gip~~G~~~~a~~i~~DK~~~k~~ 102 (299)
T PRK14571 24 VKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDFL-GIRYTGSDAFSSMICFDKLLTYRF 102 (299)
T ss_pred HHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHHHH
Confidence 4455677899999998776432 2357899988775431 013355555555 67777 448899999999988777
Q ss_pred HHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCce
Q 023408 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPL 195 (282)
Q Consensus 123 l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L~~P~ 195 (282)
++. .+.+|+++.+... .....+.||+|+||....|+ -.+.++.+.+.|.. -..++
T Consensus 103 l~~--------~ip~p~~~~~~~~-------~~~~~l~~P~vvKP~~g~~s---~Gv~~v~~~~el~~~~~~~~~~~~~v 164 (299)
T PRK14571 103 LKG--------TVEIPDFVEIKEF-------MKTSPLGYPCVVKPRREGSS---IGVFICESDEEFQHALKEDLPRYGSV 164 (299)
T ss_pred Hhc--------CCCCCCEEEEech-------hhhhhcCCCEEEecCCCCCc---CCEEEECCHHHHHHHHHHHHhhCCcE
Confidence 652 2778999888521 11245899999999877664 55678999888742 13489
Q ss_pred eEEEeeeccceEEEEEEEcc
Q 023408 196 VLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 196 VlQEFINH~gvLfKVYVIGd 215 (282)
++||||. |.=|=|-|+|+
T Consensus 165 lVEeyI~--G~E~sv~vl~~ 182 (299)
T PRK14571 165 IVQEYIP--GREMTVSILET 182 (299)
T ss_pred EEEcccc--ceEEEEEEEcC
Confidence 9999996 78999999986
No 15
>PRK05246 glutathione synthetase; Provisional
Probab=98.05 E-value=0.00011 Score=69.31 Aligned_cols=160 Identities=17% Similarity=0.202 Sum_probs=98.6
Q ss_pred HHhHHHhcCcEEEEecCCCCC---------------C--CC-------------CCceEEEeccCCh-----HHHHHHHH
Q 023408 49 LEGLARNKGILFVAIDQNRPL---------------S--DQ-------------GPFDIVLHKLTGK-----EWRQILEE 93 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL---------------~--~Q-------------gpfDvILHKltd~-----~~~~~lq~ 93 (282)
+...|+++|++...+++..-. . .+ ..+|+|+-+-... .+...+-+
T Consensus 24 l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~~~~l~ 103 (316)
T PRK05246 24 MMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLADFDVILMRKDPPFDMEYIYATYLLE 103 (316)
T ss_pred HHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCccccCCEEEEcCCCCCChHHHHHHHHHH
Confidence 667788899888766665311 0 00 1379888664221 12223334
Q ss_pred HHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCC
Q 023408 94 YRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGS 173 (282)
Q Consensus 94 y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gs 173 (282)
..+.. .+.++.++++++...|...+++... .+|+..+.+ +.+++.+.+.+.| |+|+||+..+|.
T Consensus 104 ~le~~-g~~v~N~p~~l~~~~dK~~~~~l~~-----------~vP~T~~~~-~~~~~~~~~~~~~---~vVlKP~~G~~G 167 (316)
T PRK05246 104 RAERP-GTLVVNKPQSLRDANEKLFTLWFPE-----------LMPPTLVTR-DKAEIRAFRAEHG---DIILKPLDGMGG 167 (316)
T ss_pred HHHhC-CCeEECCHHHHHhCccHHHHHhhhc-----------cCCCEEEeC-CHHHHHHHHHHCC---CEEEEECCCCCc
Confidence 44444 8999999999999988877665421 368876553 3333344444444 999999998875
Q ss_pred CCceeEEEEeccCccC-------CC-CCceeEEEeeecc-ceEEEEEEEcceEEE--EEecCCC
Q 023408 174 AKSHELSLAYDQYSLK-------KL-EPPLVLQEFVNHG-GVLFKVYIVGEAIKV--VRRFSLP 226 (282)
Q Consensus 174 a~SH~Maivf~~~gL~-------~L-~~P~VlQEFINH~-gvLfKVYVIGd~v~v--v~R~SLp 226 (282)
...+. +-.+...+. .+ ..|+++|+||.-. +-=..|+|+|+++.. +.|-+-+
T Consensus 168 ~gV~~--i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv~~a~~R~~~~ 229 (316)
T PRK05246 168 AGIFR--VKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPVGYALARIPAG 229 (316)
T ss_pred cceEE--EeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEhhheeEecCCC
Confidence 44333 212233322 22 4699999999652 335689999998664 5564443
No 16
>PRK07206 hypothetical protein; Provisional
Probab=97.97 E-value=9e-05 Score=71.41 Aligned_cols=101 Identities=22% Similarity=0.313 Sum_probs=69.2
Q ss_pred CeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCC-ccceEeeeccccCCCCcee
Q 023408 100 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVADGSAKSHE 178 (282)
Q Consensus 100 ~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL-~fPlI~KPlvA~Gsa~SH~ 178 (282)
.+++-.+++.+....|+..|.+.+++. .+.+|+++.++ +.+++.+.+...|. .+|+|+||....|+ ..
T Consensus 93 ~l~~~~~~~~~~~~~dK~~~r~~l~~~-------gi~~p~~~~~~-~~~e~~~~~~~~g~~~~P~VvKP~~g~gs---~g 161 (416)
T PRK07206 93 TPQYSNDPALSSARRNKAEMINALAEA-------GLPAARQINTA-DWEEAEAWLRENGLIDRPVVIKPLESAGS---DG 161 (416)
T ss_pred CCCcCCChhhHHHhhCHHHHHHHHHHc-------CCCcccEEecC-CHHHHHHHHHhcCCCCCCEEEeCCCCCCC---CC
Confidence 333456778888889999999998875 46789998885 22333334433332 44999999887764 57
Q ss_pred EEEEeccCccCCC--------------CCceeEEEeeeccceEEEEEEE
Q 023408 179 LSLAYDQYSLKKL--------------EPPLVLQEFVNHGGVLFKVYIV 213 (282)
Q Consensus 179 Maivf~~~gL~~L--------------~~P~VlQEFINH~gvLfKVYVI 213 (282)
+.++.+.+.|... ..++++||||. |.-|=|-++
T Consensus 162 v~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~E~sv~~~ 208 (416)
T PRK07206 162 VFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI--GTEYVVNFV 208 (416)
T ss_pred EEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--cEEEEEEEE
Confidence 7788887766321 35899999997 455555444
No 17
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=97.95 E-value=7.8e-05 Score=71.72 Aligned_cols=151 Identities=19% Similarity=0.174 Sum_probs=95.5
Q ss_pred HHhHHHhcCcEEEEecCCCCCCCCCCceE-EEeccCChH------------------HHHHHHHHHHhCCCeEEeCchhH
Q 023408 49 LEGLARNKGILFVAIDQNRPLSDQGPFDI-VLHKLTGKE------------------WRQILEEYRQTHPEVTVLDPPYA 109 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL~~QgpfDv-ILHKltd~~------------------~~~~lq~y~~~hP~v~VIDP~~a 109 (282)
+...|++.|+.++-+|.+..-.-..-.|- ++--..|.+ +-...-++.+++ ..+.-++++
T Consensus 17 l~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e~e~i~~~~l~~l~~~--~~~~p~~~~ 94 (372)
T PRK06019 17 LALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYEFENVPAEALDALAAR--VPVPPGPDA 94 (372)
T ss_pred HHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeCcCCCCHHHHHHHhcC--CeeCcCHHH
Confidence 44567888999999998643211111221 111222321 111222344454 457789999
Q ss_pred HhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccC
Q 023408 110 IQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK 189 (282)
Q Consensus 110 i~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~ 189 (282)
++...||..|-+.++++ .|.+|++..+++ .+++.+.. ..+.||+|+||... ..+++...++.+++.|.
T Consensus 95 ~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~s-~~~l~~~~--~~~g~P~vlKp~~~--g~~g~Gv~~v~~~~el~ 162 (372)
T PRK06019 95 LAIAQDRLTEKQFLDKL-------GIPVAPFAVVDS-AEDLEAAL--ADLGLPAVLKTRRG--GYDGKGQWVIRSAEDLE 162 (372)
T ss_pred HHHhcCHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHHH--HHcCCcEEEEeCCC--CcCCCCeEEECCHHHHH
Confidence 99999999999998875 477899998853 22222222 35789999999752 23467788999988775
Q ss_pred C----C-CCceeEEEeeeccceEEEEEEEc
Q 023408 190 K----L-EPPLVLQEFVNHGGVLFKVYIVG 214 (282)
Q Consensus 190 ~----L-~~P~VlQEFINH~gvLfKVYVIG 214 (282)
. + ..++++||||+- +.-|=|-+++
T Consensus 163 ~a~~~~~~~~~ivEe~I~~-~~E~sv~~~~ 191 (372)
T PRK06019 163 AAWALLGSVPCILEEFVPF-EREVSVIVAR 191 (372)
T ss_pred HHHHhcCCCCEEEEecCCC-CeEEEEEEEE
Confidence 3 2 358999999984 3334454444
No 18
>PRK06849 hypothetical protein; Provisional
Probab=97.93 E-value=0.00018 Score=69.20 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=70.9
Q ss_pred EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEE
Q 023408 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (282)
Q Consensus 103 VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maiv 182 (282)
..-+++.++.++|+..+.+.++++ .+.+|+++.+++ .+++ ..+......||+|+||...+|+. .+.++
T Consensus 104 ~~~~~~~~~~~~DK~~~~~~~~~~-------GipvP~t~~v~~-~~~l-~~~~~~~~~~P~vlKP~~~~~~~---~v~~~ 171 (389)
T PRK06849 104 LHFDFELLLLLHNKWEFAEQARSL-------GLSVPKTYLITD-PEAI-RNFMFKTPHTPYVLKPIYSRFVR---RVDLL 171 (389)
T ss_pred EcCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHH-HHHhhcCCCCcEEEEeCcccCCC---eEEEe
Confidence 457889999999999999998876 477899999853 2222 22222334799999999887754 55567
Q ss_pred eccCccCCC----CCceeEEEeeeccceEEEEEEEcceE
Q 023408 183 YDQYSLKKL----EPPLVLQEFVNHGGVLFKVYIVGEAI 217 (282)
Q Consensus 183 f~~~gL~~L----~~P~VlQEFINH~gvLfKVYVIGd~v 217 (282)
.+++.+..+ ..|+++||||.-...--=.++.+.++
T Consensus 172 ~~~~~l~~~~~~~~~~~ivQe~I~G~e~~~~~~~~~G~v 210 (389)
T PRK06849 172 PKEAALKELPISKDNPWVMQEFIQGKEYCSYSIVRSGEL 210 (389)
T ss_pred cCHHHhcccccCCCCCeEEEEEecCCeEEEEEEEECCEE
Confidence 777766655 24899999998443222233444444
No 19
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=97.93 E-value=0.00014 Score=68.90 Aligned_cols=151 Identities=21% Similarity=0.260 Sum_probs=94.3
Q ss_pred HHHhHHHhcCcEEEEecCCCCCCCCCCce-EEEeccCChHH-------------------HHHHHHHHHhCCCeEEeCch
Q 023408 48 KLEGLARNKGILFVAIDQNRPLSDQGPFD-IVLHKLTGKEW-------------------RQILEEYRQTHPEVTVLDPP 107 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~~QgpfD-vILHKltd~~~-------------------~~~lq~y~~~hP~v~VIDP~ 107 (282)
-+...|++.|+.++-+|.+..-....-.| .++...+|.+. ...+..+.+. .+.+.-++
T Consensus 13 ~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e~e~i~~~~l~~l~~~--g~~~~p~~ 90 (352)
T TIGR01161 13 MLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFEFEHVDVEALEKLEAR--GVKLFPSP 90 (352)
T ss_pred HHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeCcCcCCHHHHHHHHhC--CCeECCCH
Confidence 35567788999999999864211111112 22334444321 1123333333 25567888
Q ss_pred hHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCc
Q 023408 108 YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS 187 (282)
Q Consensus 108 ~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~g 187 (282)
++++...||..+-+.+++. .+.+|+++.+++ .+++.+.+ ..+.||+|+||.... ..+..+.++.+++.
T Consensus 91 ~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~vvKp~~~g--~~g~Gv~~v~~~~e 158 (352)
T TIGR01161 91 DALAIIQDRLTQKQFLQKL-------GLPVPPFLVIKD-EEELDAAL--QELGFPVVLKARTGG--YDGRGQYRIRNEAD 158 (352)
T ss_pred HHHHHhcCHHHHHHHHHHc-------CCCCCCccEeCC-HHHHHHHH--HHcCCCEEEEeCCCC--CCCCCEEEECCHHH
Confidence 9999999999999988864 477899998863 22222222 357899999998642 23567788888777
Q ss_pred cCC----C-CCceeEEEeeeccceEEEEEEE
Q 023408 188 LKK----L-EPPLVLQEFVNHGGVLFKVYIV 213 (282)
Q Consensus 188 L~~----L-~~P~VlQEFINH~gvLfKVYVI 213 (282)
|.. + ..++++||||..+ .=|=|.++
T Consensus 159 l~~a~~~~~~~~~lvEe~I~~~-~E~sv~~~ 188 (352)
T TIGR01161 159 LPQAAKELGDRECIVEEFVPFE-RELSVIVA 188 (352)
T ss_pred HHHHHHhcCCCcEEEEecCCCC-eEEEEEEE
Confidence 642 2 3489999999853 33334343
No 20
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=97.92 E-value=0.00021 Score=68.01 Aligned_cols=99 Identities=15% Similarity=0.285 Sum_probs=68.9
Q ss_pred eEEeCchhHHhhhcCHHHHHHHH-HhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeE
Q 023408 101 VTVLDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 179 (282)
Q Consensus 101 v~VIDP~~ai~~L~nR~~ml~~l-~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~M 179 (282)
+.+.-++++++...||..+.+.+ ++. .|.+|+++.+++ .+++.+.+ ..+.||+|+||....| |-.+
T Consensus 86 ~~~~~~~~~~~~~~dK~~~~~~~~~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~VvKP~~g~~---s~gv 152 (380)
T TIGR01142 86 YFVVPNARATKLTMNREGIRRLAAEEL-------GLPTSRYMFADS-LDELREAV--EKIGYPCVVKPVMSSS---GKGQ 152 (380)
T ss_pred CeeCCCHHHHHHhhCHHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHHH--HHcCCCEEEEECCCcC---CCCe
Confidence 44566788888889998877764 443 477899998853 22222222 3678999999985544 5678
Q ss_pred EEEeccCccCCC-----------CCceeEEEeeeccceEEEEEEE
Q 023408 180 SLAYDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIV 213 (282)
Q Consensus 180 aivf~~~gL~~L-----------~~P~VlQEFINH~gvLfKVYVI 213 (282)
.++.+++.|... ..++++||||.. +.=|-|.++
T Consensus 153 ~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~-~~E~sv~~~ 196 (380)
T TIGR01142 153 SVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDF-DYEITLLTV 196 (380)
T ss_pred EEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCC-CEEEEEEEE
Confidence 899998877421 358999999984 455555555
No 21
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=97.89 E-value=0.00018 Score=68.83 Aligned_cols=150 Identities=15% Similarity=0.238 Sum_probs=93.4
Q ss_pred HHHhHHHhcCcEEEEecCCCCCCC-----------------------CCCceEEEeccCChHHHHHHHHHHHhCCCeEEe
Q 023408 48 KLEGLARNKGILFVAIDQNRPLSD-----------------------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~~-----------------------QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI 104 (282)
.+...+++.|+.++.+|.+..-.. ...+|+|+--..+.. ...+.+. .+. .+.+.
T Consensus 26 ~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~~-~~~~~~l-~~~-g~~~~ 102 (395)
T PRK09288 26 EVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEAIA-TDALVEL-EKE-GFNVV 102 (395)
T ss_pred HHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCcCC-HHHHHHH-Hhc-CCeeC
Confidence 455567888999988887542110 013444443222211 1223333 333 56566
Q ss_pred CchhHHhhhcCHHHHHHHHH-hccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEe
Q 023408 105 DPPYAIQHLHNRQSMLQCVA-DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY 183 (282)
Q Consensus 105 DP~~ai~~L~nR~~ml~~l~-~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf 183 (282)
.++++++...||..+-+.+. ++ .+.+|++..+++ .+++.+.. ..+.||+|+||....| |..+.++.
T Consensus 103 ~~~~a~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~s-~~~l~~~~--~~~g~P~VvKP~~g~~---s~Gv~~v~ 169 (395)
T PRK09288 103 PTARATRLTMNREGIRRLAAEEL-------GLPTSPYRFADS-LEELRAAV--EEIGYPCVVKPVMSSS---GKGQSVVR 169 (395)
T ss_pred CCHHHHHHHhCHHHHHHHHHHhC-------CCCCCCceEECC-HHHHHHHH--HhcCCCEEEEeCCCcC---CCCeEEEC
Confidence 77899999999998888773 43 477899998863 22222222 3588999999985444 56678999
Q ss_pred ccCccCCC-----------CCceeEEEeeeccceEEEEEEEc
Q 023408 184 DQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIVG 214 (282)
Q Consensus 184 ~~~gL~~L-----------~~P~VlQEFINH~gvLfKVYVIG 214 (282)
+++.|.+. ..++++||||.. +.=+-|.+++
T Consensus 170 ~~~el~~~~~~~~~~~~~~~~~~lvEefi~~-~~E~sv~~~~ 210 (395)
T PRK09288 170 SPEDIEKAWEYAQEGGRGGAGRVIVEEFIDF-DYEITLLTVR 210 (395)
T ss_pred CHHHHHHHHHHHHhhccccCCCEEEEEecCC-CEEEEEEEEE
Confidence 98777421 268999999984 4445555543
No 22
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=97.86 E-value=0.00022 Score=67.67 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=89.1
Q ss_pred CceEEEeccCChH-HHHHHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC--C
Q 023408 74 PFDIVLHKLTGKE-WRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS--S 149 (282)
Q Consensus 74 pfDvILHKltd~~-~~~~lq~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~--~ 149 (282)
.+|+++-=+.+.. -...+|.+.+.+ +++.+=+ ..+....+|+..+.+.+++. .|.+|+++.+..... .
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~-gipy~G~~~~a~~l~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 152 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELL-GIPYVGCGVLASALSMDKILTKRLLAAA-------GIPVAPYVVLTRGDWEEA 152 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEeccccchh
Confidence 5788766554320 012345555443 6666654 67888999999999998864 577899998864322 1
Q ss_pred chHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEEcc
Q 023408 150 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 150 ~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..+.+ ...+.||+|+||....| |-.+.+|.+.+.|.. ...++++|+||. |.=|-|.|+|+
T Consensus 153 ~~~~~-~~~~~~P~vVKP~~~gs---S~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v~vl~~ 219 (333)
T PRK01966 153 SLAEI-EAKLGLPVFVKPANLGS---SVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK--GREIECAVLGN 219 (333)
T ss_pred hHHHH-HHhcCCCEEEEeCCCCC---ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEEEEECC
Confidence 11222 24689999999987665 456788999887752 357899999998 68899999996
No 23
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=97.86 E-value=3.3e-05 Score=64.86 Aligned_cols=93 Identities=16% Similarity=0.325 Sum_probs=55.5
Q ss_pred hhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCC
Q 023408 112 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL 191 (282)
Q Consensus 112 ~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L 191 (282)
++.|+..|.+.+.+. .+.+|+++.++.. +++.+.... +.||+|+||....| |-.+.++.+++.|...
T Consensus 1 ~~~dK~~~~~~~~~~-------gv~~P~~~~~~~~-~~~~~~~~~--~~~p~vvKp~~g~g---s~gv~~~~~~~~l~~~ 67 (184)
T PF13535_consen 1 RCNDKYRMRELLKKA-------GVPVPKTRIVDSE-EELRAFAED--LGFPFVVKPVDGSG---SRGVFIVHSPEELEAA 67 (184)
T ss_dssp -TCCHHHHHHHHHHH-------TS----EEEECSH-HHHHHHHHH--SSSSEEEEESS-ST---TTT-EEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-------CcCCCCEEEECCH-HHHHHHHHH--cCCCEEEEcCcccc---CCCEEEeCCHHHHHHH
Confidence 357888888888765 4668999988632 233333333 44999999999877 4678889898888643
Q ss_pred -----------CCceeEEEeeeccceEEEEEEEcceE
Q 023408 192 -----------EPPLVLQEFVNHGGVLFKVYIVGEAI 217 (282)
Q Consensus 192 -----------~~P~VlQEFINH~gvLfKVYVIGd~v 217 (282)
..++++||||.-...=+-+++.+..+
T Consensus 68 ~~~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~ 104 (184)
T PF13535_consen 68 LAEIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEV 104 (184)
T ss_dssp HHHHHHHHS-HSSSEEEEE---SEEEEEEEEEETTEE
T ss_pred HHHHHHhcccCCccEEEEEeeeeeeEEEEEEEEcceE
Confidence 35899999999333444444444444
No 24
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=97.84 E-value=0.00021 Score=66.76 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=102.7
Q ss_pred HHhHHHhcCcEEEEecCCC-CCCC---CCCceEEEeccCChH-HHHHHHHHHHhCCCeEEeC-chhHHhhhcCHHHHHHH
Q 023408 49 LEGLARNKGILFVAIDQNR-PLSD---QGPFDIVLHKLTGKE-WRQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQC 122 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~-pL~~---QgpfDvILHKltd~~-~~~~lq~y~~~hP~v~VID-P~~ai~~L~nR~~ml~~ 122 (282)
.....++.|.+.+.+|.+. .+-. ..++|+++-=+.+.. -...++...+.+ ++.++- .+.++...+|+..+-+.
T Consensus 27 v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~~-gip~~Gs~~~a~~l~~DK~~~k~~ 105 (296)
T PRK14569 27 VLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALHGEDGENGRVSALLEML-EIKHTSSSMKSSVITMDKMISKEI 105 (296)
T ss_pred HHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHHc-CCCeeCCCHHHHHHHHCHHHHHHH
Confidence 4445577899999999864 2111 246786655443221 012344455554 576654 56899999999999998
Q ss_pred HHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC----C--CCcee
Q 023408 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK----L--EPPLV 196 (282)
Q Consensus 123 l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~----L--~~P~V 196 (282)
+++. .|.+|++..+... .. ....+.||+|+||....| |..+.+|.+++.|.. + ..+++
T Consensus 106 l~~~-------gIptp~~~~~~~~----~~--~~~~~~~P~vVKP~~ggs---s~Gv~~v~~~~eL~~a~~~~~~~~~~l 169 (296)
T PRK14569 106 LMHH-------RMPTPMAKFLTDK----LV--AEDEISFPVAVKPSSGGS---SIATFKVKSIQELKHAYEEASKYGEVM 169 (296)
T ss_pred HHHC-------CCCCCCeEEEchh----hh--hHhhcCCCEEEEeCCCCC---CcCeEEcCCHHHHHHHHHHHHhcCCEE
Confidence 8864 4778998877531 11 134689999999976433 577889999888752 1 24899
Q ss_pred EEEeeeccceEEEEEEEcceE
Q 023408 197 LQEFVNHGGVLFKVYIVGEAI 217 (282)
Q Consensus 197 lQEFINH~gvLfKVYVIGd~v 217 (282)
+||||. |.=|=|.|+|+.+
T Consensus 170 vEefI~--G~E~tv~vl~~~~ 188 (296)
T PRK14569 170 IEQWVT--GKEITVAIVNDEV 188 (296)
T ss_pred EEcccc--cEEEEEEEECCcC
Confidence 999995 6889999999864
No 25
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.81 E-value=0.00041 Score=75.58 Aligned_cols=107 Identities=15% Similarity=0.382 Sum_probs=75.7
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCcee
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~ 178 (282)
.+.++ -++++++.+.||..+.+.++++ .+.+|+++.+++ .++..+. ...+.||+|+||....| +..
T Consensus 653 Gi~i~G~s~~~i~~~~DK~~f~~lL~~~-------GIp~P~~~~v~s-~ee~~~~--~~~igyPvIVKP~~~~G---g~g 719 (1050)
T TIGR01369 653 GVPILGTSPESIDRAEDREKFSELLDEL-------GIPQPKWKTATS-VEEAVEF--ASEIGYPVLVRPSYVLG---GRA 719 (1050)
T ss_pred CCcEECCCHHHHHHHCCHHHHHHHHHHC-------CcCCCCeEEECC-HHHHHHH--HHhcCCCEEEEECCCCC---CCC
Confidence 45544 6789999999999999998875 466899998852 2222222 23578999999987666 478
Q ss_pred EEEEeccCccCC---------CCCceeEEEeeecc-ceEEEEEEEcceEEE
Q 023408 179 LSLAYDQYSLKK---------LEPPLVLQEFVNHG-GVLFKVYIVGEAIKV 219 (282)
Q Consensus 179 Maivf~~~gL~~---------L~~P~VlQEFINH~-gvLfKVYVIGd~v~v 219 (282)
|.++.+++.|.. -..|+++||||..| .+-.=+++-|+.+.+
T Consensus 720 v~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d~g~v~i 770 (1050)
T TIGR01369 720 MEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSDGEEVLI 770 (1050)
T ss_pred eEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEeCCEEEE
Confidence 999999888753 23589999999753 233334455555544
No 26
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.69 E-value=0.00059 Score=74.36 Aligned_cols=105 Identities=18% Similarity=0.377 Sum_probs=72.8
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCcee
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~ 178 (282)
.+.++ -++++++...||..+.+.++++ .|.+|+++.+.+ .++..+.. ..+.||+|+||.-..| +..
T Consensus 653 Gi~ilg~s~~ai~~~~DK~~~~~~L~~~-------GIp~P~~~~~~s-~ee~~~~~--~~igyPvvVKP~~~~G---g~G 719 (1066)
T PRK05294 653 GVPILGTSPDAIDLAEDRERFSKLLEKL-------GIPQPPNGTATS-VEEALEVA--EEIGYPVLVRPSYVLG---GRA 719 (1066)
T ss_pred CCceeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCeEEECC-HHHHHHHH--HhcCCCeEEEeCCCCC---CCc
Confidence 34433 5689999999999999998875 467899998852 22222222 3578999999966544 678
Q ss_pred EEEEeccCccCC---------CCCceeEEEeeecc-ceEEEEEEEcceE
Q 023408 179 LSLAYDQYSLKK---------LEPPLVLQEFVNHG-GVLFKVYIVGEAI 217 (282)
Q Consensus 179 Maivf~~~gL~~---------L~~P~VlQEFINH~-gvLfKVYVIGd~v 217 (282)
|.++.+++.|.. -..|+++||||... ..-.=+++-|+.+
T Consensus 720 v~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~~v 768 (1066)
T PRK05294 720 MEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGEDV 768 (1066)
T ss_pred EEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCCeE
Confidence 999999888752 24689999999755 3333344445533
No 27
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.67 E-value=0.00048 Score=70.20 Aligned_cols=148 Identities=16% Similarity=0.271 Sum_probs=99.9
Q ss_pred hHHHhHHHhcCcEEEEecCCCCCCC--CCCceEEEeccCChHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHH
Q 023408 47 PKLEGLARNKGILFVAIDQNRPLSD--QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVA 124 (282)
Q Consensus 47 ~~l~~~~~~~Gi~fV~ID~~~pL~~--QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~ 124 (282)
..++..|+++|+.++.+|-+..+-. +| -+.++ +. . ....+.+..+++...|+..+.+.++
T Consensus 245 ~~Ii~~a~~~Gi~~~~~~se~~~~~L~~g-~~~~~--------~~------~---s~~~~~s~~ai~~~~DK~~tk~lL~ 306 (547)
T TIGR03103 245 RIIVDEARRRGIEVEVLDAEGGLFRLSLG-GRSIR--------CR------E---SLSELTSAVAMSLCDDKRLTRRLVS 306 (547)
T ss_pred HHHHHHHHHcCCcEEEECCCCCEEEecCC-ceEEE--------EE------e---ccCCCCCHHHHHHhcCHHHHHHHHH
Confidence 4577899999999999774422110 11 11111 00 1 1113448889999999999999988
Q ss_pred hccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEE-EeccCccCC-------CCCcee
Q 023408 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKK-------LEPPLV 196 (282)
Q Consensus 125 ~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Mai-vf~~~gL~~-------L~~P~V 196 (282)
+. .|.+|+...+. +.+++.+.+++.| |+|+||.... .+..|.+ +.+++.|.. ...+++
T Consensus 307 ~a-------GIpVP~~~~~~-~~~~~~~~~~~~G---~vVVKP~~G~---~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vl 372 (547)
T TIGR03103 307 EA-------GLQVPEQQLAG-NGEAVEAFLAEHG---AVVVKPVRGE---QGKGISVDVRTPDDLEAAIAKARQFCDRVL 372 (547)
T ss_pred Hc-------CcCCCCEEEEC-CHHHHHHHHHHhC---CEEEEECCCC---CCcCeEEecCCHHHHHHHHHHHHhcCCcEE
Confidence 64 47789998885 3223333334444 7999997653 4667776 778777642 346899
Q ss_pred EEEeeeccceEEEEEEEcceEEEEEecCCCCC
Q 023408 197 LQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDV 228 (282)
Q Consensus 197 lQEFINH~gvLfKVYVIGd~v~vv~R~SLpN~ 228 (282)
+|+||. |.=|.|+|||+++..+.+.--|++
T Consensus 373 vEe~i~--G~d~Rv~Vigg~vvaa~~R~~~~V 402 (547)
T TIGR03103 373 LERYVP--GEDLRLVVIDFEVVAAAVRRPPEV 402 (547)
T ss_pred EEEecc--CCeEEEEEECCEEEEEEEecCcEE
Confidence 999995 788999999999998776544443
No 28
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=97.67 E-value=0.00063 Score=64.95 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=85.7
Q ss_pred CceE---EEeccCChH-HHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC-
Q 023408 74 PFDI---VLHKLTGKE-WRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA- 147 (282)
Q Consensus 74 pfDv---ILHKltd~~-~~~~lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~- 147 (282)
.+|+ .+|.-.+++ + +|.+.+.. +++++ -+..++...+|+..+.+.+.+. .|.+|+++.+....
T Consensus 88 ~~d~~f~~~hg~~gEdg~---iq~~le~~-gipy~Gs~~~a~~i~~DK~~~k~~l~~~-------GI~~p~~~~~~~~~~ 156 (347)
T PRK14572 88 DADIAFLGLHGGAGEDGR---IQGFLDTL-GIPYTGSGVLASALAMDKTRANQIFLQS-------GQKVAPFFELEKLKY 156 (347)
T ss_pred CcCEEEEecCCCCCCCcH---HHHHHHHc-CcCcCCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEEcccc
Confidence 3666 455555442 3 33333333 46665 5678999999999999998764 57889999885321
Q ss_pred ----CCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEEcc
Q 023408 148 ----SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 148 ----~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
.+..+. ...+.||+|+||....| |....++.+++.|.+ ...++++||||. |.=|=|-|+|+
T Consensus 157 ~~~~~~~~~~--~~~l~~PvvVKP~~ggs---S~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~--G~E~sv~vi~~ 228 (347)
T PRK14572 157 LNSPRKTLLK--LESLGFPQFLKPVEGGS---SVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS--GTEVSCGVLER 228 (347)
T ss_pred ccChHHHHHH--HHhcCCCEEEecCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc--cEEEEEEEEeC
Confidence 111122 23589999999977533 467789999887752 246899999996 78899999974
No 29
>PRK05586 biotin carboxylase; Validated
Probab=97.58 E-value=0.00077 Score=66.34 Aligned_cols=99 Identities=13% Similarity=0.236 Sum_probs=71.3
Q ss_pred EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEE
Q 023408 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (282)
Q Consensus 103 VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--vi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Ma 180 (282)
+--++++++.+.||..+-+.+++. .|.+|++. .++ +.+++.+.. ..+.||+|+||.... .|..+.
T Consensus 103 ~g~s~~~~~~~~DK~~~k~~l~~~-------GIpvp~~~~~~~~-~~~e~~~~~--~~igyPvvvKP~~gg---gg~Gv~ 169 (447)
T PRK05586 103 IGPDSETIELMGNKSNAREIMIKA-------GVPVVPGSEGEIE-NEEEALEIA--KEIGYPVMVKASAGG---GGRGIR 169 (447)
T ss_pred ECcCHHHHHhhCCHHHHHHHHHHC-------CCCCCCCcccccC-CHHHHHHHH--HHcCCCEEEEECCCC---CCCeeE
Confidence 557789999999999999988764 46788764 343 222222222 358899999997644 478899
Q ss_pred EEeccCccCCC-------------CCceeEEEeeeccceEEEEEEEcc
Q 023408 181 LAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 181 ivf~~~gL~~L-------------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
++.+++.|.+. +.++++||||... .-|-|.|++|
T Consensus 170 ~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~-~ei~v~v~~d 216 (447)
T PRK05586 170 IVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP-KHIEFQILGD 216 (447)
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCC-eEEEEEEEEC
Confidence 99998887432 3689999999854 4477777765
No 30
>PRK08462 biotin carboxylase; Validated
Probab=97.58 E-value=0.00048 Score=67.49 Aligned_cols=142 Identities=15% Similarity=0.228 Sum_probs=92.2
Q ss_pred hccc-hhHHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCChHHHHHHHHHHHhCCCeE-EeCchhHHhhhcCHHHH
Q 023408 42 KSFL-QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVT-VLDPPYAIQHLHNRQSM 119 (282)
Q Consensus 42 ~sf~-~~~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~-VIDP~~ai~~L~nR~~m 119 (282)
+++. .+.++.+|++++++.+--=.. .++.. ..+.+..+++ ++. +--++++++...|+..|
T Consensus 60 ~~y~~~~~l~~~~~~~~~D~i~pg~g--------------~lse~---~~~a~~~e~~-Gi~~~g~~~~~~~~~~dK~~~ 121 (445)
T PRK08462 60 ESYLNIPAIISAAEIFEADAIFPGYG--------------FLSEN---QNFVEICSHH-NIKFIGPSVEVMALMSDKSKA 121 (445)
T ss_pred cccCCHHHHHHHHHHcCCCEEEECCC--------------ccccC---HHHHHHHHHC-CCeEECcCHHHHHHhCCHHHH
Confidence 3553 567889999998887542221 11211 2233444444 454 45788999999999999
Q ss_pred HHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCC------
Q 023408 120 LQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------ 191 (282)
Q Consensus 120 l~~l~~l~~~~~~~~i~vP~~v--vi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L------ 191 (282)
.+.+.+. .|.+|+.. .++ +.++..+.. ..+.||+|+||....| |..|.++.+++.|...
T Consensus 122 r~~l~~~-------gIp~pp~~~~~~~-~~~~~~~~~--~~~g~PvvvKP~~g~g---s~Gv~~v~~~~eL~~~~~~~~~ 188 (445)
T PRK08462 122 KEVMKRA-------GVPVIPGSDGALK-SYEEAKKIA--KEIGYPVILKAAAGGG---GRGMRVVEDESDLENLYLAAES 188 (445)
T ss_pred HHHHHHC-------CCCCCCCcccccC-CHHHHHHHH--HHcCCCEEEEeCCCCC---CCCeEEECCHHHHHHHHHHHHH
Confidence 9998865 35566643 232 222222222 3578999999977655 6788999998887531
Q ss_pred -------CCceeEEEeeeccceEEEEEEEcc
Q 023408 192 -------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 192 -------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..++++||||..+ .-|-|.++||
T Consensus 189 ~~~~~~~~~~vlvEe~i~g~-~e~~v~v~~~ 218 (445)
T PRK08462 189 EALSAFGDGTMYMEKFINNP-RHIEVQILGD 218 (445)
T ss_pred HHHhccCCCcEEEeccCCCC-eEEEEEEEEC
Confidence 2479999999753 3467777755
No 31
>PRK14016 cyanophycin synthetase; Provisional
Probab=97.56 E-value=0.00025 Score=74.44 Aligned_cols=149 Identities=15% Similarity=0.286 Sum_probs=101.5
Q ss_pred HHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCChHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhcc
Q 023408 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMN 127 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~ 127 (282)
.+++.|.++||.+..++-. . ++|=-++.. .+.++.... --++..+++...|+..+.+.+++.
T Consensus 164 ~I~~~A~~~gi~~~~l~~~-~---------~v~lgyG~~-~~~i~~~~~------~~~s~~a~~i~~DK~~tk~lL~~~- 225 (727)
T PRK14016 164 AIVDAAEARGIPYIRLGDG-S---------LVQLGYGKY-QRRIQAAET------DQTSAIAVDIACDKELTKRLLAAA- 225 (727)
T ss_pred HHHHHHHHcCCCEEEeCCC-C---------eEecCCcHH-HHHHHHhcC------CCCcHHHHHHhCCHHHHHHHHHHC-
Confidence 4667888888888776531 1 133333332 122222211 156778899999999999988864
Q ss_pred ccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEE-EeccCccCC-------CCCceeEEE
Q 023408 128 LSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKK-------LEPPLVLQE 199 (282)
Q Consensus 128 ~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Mai-vf~~~gL~~-------L~~P~VlQE 199 (282)
.|.+|+...+. +.++..+.. ..+.||+|+||.... .+..|.+ +.+++.|.. ...++++|+
T Consensus 226 ------GIPvP~~~~v~-s~~~a~~~a--~~iG~PvVVKP~~G~---~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe 293 (727)
T PRK14016 226 ------GVPVPEGRVVT-SAEDAWEAA--EEIGYPVVVKPLDGN---HGRGVTVNITTREEIEAAYAVASKESSDVIVER 293 (727)
T ss_pred ------CcCCCCeeEeC-CHHHHHHHH--HHcCCCEEEEECCCC---CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 47789988774 222333332 357899999998643 3567777 777776642 246899999
Q ss_pred eeeccceEEEEEEEcceEEEEEecCCCCC
Q 023408 200 FVNHGGVLFKVYIVGEAIKVVRRFSLPDV 228 (282)
Q Consensus 200 FINH~gvLfKVYVIGd~v~vv~R~SLpN~ 228 (282)
||. |.-|.|||+|+++..+.|.--+++
T Consensus 294 ~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v 320 (727)
T PRK14016 294 YIP--GKDHRLLVVGGKLVAAARREPPHV 320 (727)
T ss_pred ecC--CceEEEEEECCEEEEEEEecCcEE
Confidence 997 677999999999999888866654
No 32
>PRK02186 argininosuccinate lyase; Provisional
Probab=97.48 E-value=0.0013 Score=70.40 Aligned_cols=94 Identities=23% Similarity=0.356 Sum_probs=67.3
Q ss_pred CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEec
Q 023408 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (282)
Q Consensus 105 DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~ 184 (282)
.++++++...|+..|-+.+++. .+.+|+++.+++. .+..+.. ..+.||+|+||.-..|+ ..+.++.+
T Consensus 97 ~~~ea~~~~~dK~~~r~~L~~~-------GIp~P~~~~v~~~-~e~~~~~--~~~~~PvVVKP~~g~gS---~GV~~v~~ 163 (887)
T PRK02186 97 ANTEAIRTCRDKKRLARTLRDH-------GIDVPRTHALALR-AVALDAL--DGLTYPVVVKPRMGSGS---VGVRLCAS 163 (887)
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEeCCH-HHHHHHH--HhCCCCEEEEeCCCCCC---CCeEEECC
Confidence 3578899999999999988864 4678999988632 2222222 35789999999887664 56778888
Q ss_pred cCccCC--------CCCceeEEEeeeccceEEEEEEE
Q 023408 185 QYSLKK--------LEPPLVLQEFVNHGGVLFKVYIV 213 (282)
Q Consensus 185 ~~gL~~--------L~~P~VlQEFINH~gvLfKVYVI 213 (282)
.+.|.. -..++++||||. |.-|=|-++
T Consensus 164 ~~el~~a~~~~~~~~~~~~lvEEfI~--G~E~sVe~i 198 (887)
T PRK02186 164 VAEAAAHCAALRRAGTRAALVQAYVE--GDEYSVETL 198 (887)
T ss_pred HHHHHHHHHHHHhcCCCcEEEeeccc--CCcEEEEEE
Confidence 776642 156899999997 345555444
No 33
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=97.48 E-value=0.0014 Score=62.33 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=85.1
Q ss_pred CceEEEeccCChH-HHHHHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCch
Q 023408 74 PFDIVLHKLTGKE-WRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (282)
Q Consensus 74 pfDvILHKltd~~-~~~~lq~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~ 151 (282)
.+|+++--+.+.. -...+|.+.+.. ++..+-+ +.+....+|+..+.+.+++. .|.+|+++.+.... +
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~~-gipy~G~~~~asai~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~-~-- 158 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLELS-GIPYVGCDIQSSALCMDKSLAYIVAKNA-------GIATPAFWTVTADE-R-- 158 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEECCc-h--
Confidence 4676664444320 023455555443 6776644 56788889999999988864 46789998886332 1
Q ss_pred HHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEEcce
Q 023408 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 152 ~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
+....+.||+|+||....| |-.+.+|.+.+.|.. ...++++||||. |.=|=|-|+|+.
T Consensus 159 --~~~~~l~~P~iVKP~~~gs---S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~sv~vl~~~ 223 (343)
T PRK14568 159 --PDAATLTYPVFVKPARSGS---SFGVSKVNSADELDYAIESARQYDSKVLIEEAVV--GSEVGCAVLGNG 223 (343)
T ss_pred --hhhhhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC--CEEEEEEEEcCC
Confidence 1134689999999987644 567778999888752 356899999997 466677888763
No 34
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=97.48 E-value=0.00049 Score=73.60 Aligned_cols=110 Identities=16% Similarity=0.290 Sum_probs=81.5
Q ss_pred CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEE-Ee
Q 023408 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AY 183 (282)
Q Consensus 105 DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Mai-vf 183 (282)
|+..+++...|+..+.+.|++. .|.+|+...+.+ .++..+... .+.||+|+||....+ +..+.+ +.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~-------GIpvP~~~~~~s-~~ea~~~~~--~ig~PvVVKP~~g~~---G~GV~l~v~ 269 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDA-------GVPVPEGTVVQS-AEDAWEAAQ--DLGYPVVIKPYDGNH---GRGVTINIL 269 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEECC-HHHHHHHHH--HcCCCEEEEECCCCC---ccCEEEEeC
Confidence 5677899999999999998864 477899988852 222233222 357999999996543 456776 77
Q ss_pred ccCccCC-------CCCceeEEEeeeccceEEEEEEEcceEEEEEecCCCCCC
Q 023408 184 DQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVT 229 (282)
Q Consensus 184 ~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIGd~v~vv~R~SLpN~~ 229 (282)
+++.|.. ...++++|+||. |.-|-|+|+|+++..+.|.=-|++.
T Consensus 270 s~~el~~a~~~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~ 320 (864)
T TIGR02068 270 TRDEIESAYEAAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVI 320 (864)
T ss_pred CHHHHHHHHHHHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCcee
Confidence 7766642 245899999996 7899999999999998777666643
No 35
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.48 E-value=0.0015 Score=71.45 Aligned_cols=101 Identities=18% Similarity=0.388 Sum_probs=73.4
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCcee
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~ 178 (282)
++.++ -++++++.+.||..+.+.+.++ .|.+|++..+.+ .+++.+. ...+.||+|+||....| +..
T Consensus 654 Gi~ilG~s~e~i~~~~DK~~f~~ll~~~-------GIp~P~~~~~~s-~ee~~~~--~~~igyPvVVKP~~~~G---g~g 720 (1068)
T PRK12815 654 GLTILGTSPDTIDRLEDRDRFYQLLDEL-------GLPHVPGLTATD-EEEAFAF--AKRIGYPVLIRPSYVIG---GQG 720 (1068)
T ss_pred CCeEECCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCeEEeCC-HHHHHHH--HHhcCCCEEEEeCCCCC---CCC
Confidence 45443 5689999999999999998875 467899988852 2222222 24578999999977655 578
Q ss_pred EEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEEcc
Q 023408 179 LSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 179 Maivf~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
|.++.+++.|.+ -..|+++|+||+ |.-|=|.++.|
T Consensus 721 v~iv~~~eeL~~~l~~~~s~~~~vlIeefI~--G~E~~Vd~i~d 762 (1068)
T PRK12815 721 MAVVYDEPALEAYLAENASQLYPILIDQFID--GKEYEVDAISD 762 (1068)
T ss_pred EEEECCHHHHHHHHHHhhcCCCCEEEEEeec--CceEEEEEEEc
Confidence 999999888753 256999999993 45566666654
No 36
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=97.35 E-value=0.00015 Score=64.84 Aligned_cols=78 Identities=24% Similarity=0.448 Sum_probs=54.5
Q ss_pred cccCCceEEEccCCCCchH-HHHhcCCccceEeeeccccCCCCceeEEEEeccCccC-------CCCCceeEEEeeeccc
Q 023408 134 KVDVPRQLVIERDASSIPD-VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK-------KLEPPLVLQEFVNHGG 205 (282)
Q Consensus 134 ~i~vP~~vvi~~d~~~~~~-~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~-------~L~~P~VlQEFINH~g 205 (282)
.|.||++++++........ .-....+.||+|+||... || |-.+.+|.+.+.|. +.+.+++++||| +|
T Consensus 6 gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~-Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI--~G 80 (203)
T PF07478_consen 6 GIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASE-GS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI--SG 80 (203)
T ss_dssp T-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESST-ST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----SS
T ss_pred CCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCC-Cc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--cc
Confidence 5899999999753211000 112457999999999854 43 66678899988875 345799999999 99
Q ss_pred eEEEEEEEcce
Q 023408 206 VLFKVYIVGEA 216 (282)
Q Consensus 206 vLfKVYVIGd~ 216 (282)
.=|-|-|+|+.
T Consensus 81 ~E~tv~vl~~~ 91 (203)
T PF07478_consen 81 REFTVGVLGNG 91 (203)
T ss_dssp EEEEEEEEESS
T ss_pred cceEEEEEecC
Confidence 99999999943
No 37
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=97.33 E-value=0.0031 Score=61.10 Aligned_cols=136 Identities=16% Similarity=0.204 Sum_probs=90.0
Q ss_pred hHHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCChHHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHh
Q 023408 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVAD 125 (282)
Q Consensus 47 ~~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~ 125 (282)
..+..+|++.++++|-+..+.+|. ..+.+..+++ .+.++ -+.++++...|+..+-+.+++
T Consensus 17 ~~l~~~~~~~~id~vi~g~E~~l~------------------~~~~d~l~~~-Gi~~~g~s~~a~~l~~dK~~~k~~l~~ 77 (379)
T PRK13790 17 QAILDFAKQQNVDWVVIGPEQPLI------------------DGLADILRAN-GFKVFGPNKQAAQIEGSKLFAKKIMEK 77 (379)
T ss_pred HHHHHHHHHhCCCEEEECCcHHHH------------------HHHHHHHHhC-CCcEECCCHHHHHHhCCHHHHHHHHHH
Confidence 447778888888887766654432 3344444443 45555 556888999999999888886
Q ss_pred ccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC---------CCCcee
Q 023408 126 MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK---------LEPPLV 196 (282)
Q Consensus 126 l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~---------L~~P~V 196 (282)
. .|.+|++..+.. .++..+.+ ..+.||+|+||.-. +.+..+.++.+.+.+.. ...+++
T Consensus 78 ~-------gIptp~~~~~~~-~~ea~~~~--~~~g~PvVvKp~~~---~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vl 144 (379)
T PRK13790 78 Y-------NIPTADYKEVER-KKDALTYI--ENCELPVVVKKDGL---AAGKGVIIADTIEAARSAIEIMYGDEEEGTVV 144 (379)
T ss_pred C-------CCCCCCEEEECC-HHHHHHHH--HhcCCCEEEEeCCC---CCCCCEEEECCHHHHHHHHHHHHhcCCCCeEE
Confidence 4 467899888752 22222333 25789999999743 35678899999777641 134899
Q ss_pred EEEeeeccceEEEEE--EEcce
Q 023408 197 LQEFVNHGGVLFKVY--IVGEA 216 (282)
Q Consensus 197 lQEFINH~gvLfKVY--VIGd~ 216 (282)
+||||.- .=|=|. +-|+.
T Consensus 145 vEe~i~G--~E~sv~~~~~g~~ 164 (379)
T PRK13790 145 FETFLEG--EEFSLMTFVNGDL 164 (379)
T ss_pred EEEcccC--ceEEEEEEeeCCE
Confidence 9999963 444444 44553
No 38
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=97.31 E-value=0.0024 Score=62.08 Aligned_cols=110 Identities=12% Similarity=0.081 Sum_probs=74.4
Q ss_pred HHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeec
Q 023408 90 ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 168 (282)
Q Consensus 90 ~lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPl 168 (282)
.+.+..+++ .+.++ -++++++...|+..|-+.+++. .|.+|++..+++ .++..+.+ ..+.||+|+||.
T Consensus 77 ~~~~~l~~~-gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~~~P~VvKP~ 145 (420)
T PRK00885 77 GIVDAFRAA-GLPIFGPTKAAAQLEGSKAFAKDFMARY-------GIPTAAYETFTD-AEEALAYL--DEKGAPIVVKAD 145 (420)
T ss_pred HHHHHHHHC-CCcEECcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCeEEeCC-HHHHHHHH--HHcCCCEEEEeC
Confidence 333344443 55555 5677899999999999998864 466899988852 22222222 347899999997
Q ss_pred cccCCCCceeEEEEeccCccCC-------------CCCceeEEEeeeccceEEEEEEEcc
Q 023408 169 VADGSAKSHELSLAYDQYSLKK-------------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 169 vA~Gsa~SH~Maivf~~~gL~~-------------L~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
...| |..+.++.+++.|.. ...++++|||+. |.=|=|.++.|
T Consensus 146 ~~~g---s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~~ 200 (420)
T PRK00885 146 GLAA---GKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD--GEEASFFAFVD 200 (420)
T ss_pred CCCC---CCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC--CcEEEEEEEEC
Confidence 6544 456889988776531 235899999997 45666666644
No 39
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=97.26 E-value=0.0091 Score=61.42 Aligned_cols=158 Identities=16% Similarity=0.121 Sum_probs=99.0
Q ss_pred CCcEEEEEEechhhhhccchhHHHhHHHhcCcEEEEecCCCCCCCCCCce-EEEeccCChHH------------------
Q 023408 27 SKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFD-IVLHKLTGKEW------------------ 87 (282)
Q Consensus 27 ~~~~~VGy~l~~KK~~sf~~~~l~~~~~~~Gi~fV~ID~~~pL~~QgpfD-vILHKltd~~~------------------ 87 (282)
....+||....- .....+...|++.|+.++.+|.+..-..-.-.| .++...+|.+.
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 455678877766 222335567888999999999865311100011 22233333210
Q ss_pred -HHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEee
Q 023408 88 -RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAK 166 (282)
Q Consensus 88 -~~~lq~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~K 166 (282)
...+ ++.+++ .+.|.-++++++...||..+-+.+.+. .|.+|++..++. .+++.+. ...+.||+|+|
T Consensus 95 ~~~~l-~~le~~-gi~v~ps~~al~i~~DK~~~K~~l~~~-------GIptp~~~~v~~-~~el~~~--~~~ig~P~VvK 162 (577)
T PLN02948 95 DVDTL-EALEKQ-GVDVQPKSSTIRIIQDKYAQKVHFSKH-------GIPLPEFMEIDD-LESAEKA--GDLFGYPLMLK 162 (577)
T ss_pred CHHHH-HHHHhc-CCccCCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeEEeCC-HHHHHHH--HHhcCCcEEEE
Confidence 1223 233333 234567889999999999999988864 477899998853 2222222 23578999999
Q ss_pred eccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeec
Q 023408 167 PLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNH 203 (282)
Q Consensus 167 PlvA~Gsa~SH~Maivf~~~gL~~-------L~~P~VlQEFINH 203 (282)
|.... .++..+.++.+++.|.. ...++++++||+.
T Consensus 163 P~~gg--s~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~ 204 (577)
T PLN02948 163 SRRLA--YDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPF 204 (577)
T ss_pred eCCCC--CCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCC
Confidence 97542 23456779999887742 2368999999976
No 40
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=97.23 E-value=0.0045 Score=60.02 Aligned_cols=107 Identities=12% Similarity=0.076 Sum_probs=73.1
Q ss_pred HHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccc-eEeeec
Q 023408 91 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPL 168 (282)
Q Consensus 91 lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fP-lI~KPl 168 (282)
+.+..+++ .+.++ -++++++...||..|.+.+.+. .|.+|++..+++ .+++.+.+ ..+.|| +|+||.
T Consensus 80 ~~~~l~~~-gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~~-~~~~~~~~--~~~g~P~~VvKp~ 148 (423)
T TIGR00877 80 LVDALEEA-GIPVFGPTKEAAQLEGSKAFAKDFMKRY-------GIPTAEYEVFTD-PEEALSYI--QEKGAPAIVVKAD 148 (423)
T ss_pred HHHHHHHC-CCeEECCCHHHHHHHCCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHH--HhcCCCeEEEEEC
Confidence 33444444 45544 6778999999999999998875 366899988853 22233332 357899 999997
Q ss_pred cccCCCCceeEEEEeccCccCC------------CCCceeEEEeeeccceEEEEEEE
Q 023408 169 VADGSAKSHELSLAYDQYSLKK------------LEPPLVLQEFVNHGGVLFKVYIV 213 (282)
Q Consensus 169 vA~Gsa~SH~Maivf~~~gL~~------------L~~P~VlQEFINH~gvLfKVYVI 213 (282)
...| |..+.++.+.+.+.. -..++++||||+. .=|=|-++
T Consensus 149 ~~~g---g~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G--~E~sv~~~ 200 (423)
T TIGR00877 149 GLAA---GKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG--EEVSLLAF 200 (423)
T ss_pred CCCC---CCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC--ceEEEEEE
Confidence 6555 456888888766532 1247999999983 45555555
No 41
>PLN02735 carbamoyl-phosphate synthase
Probab=97.10 E-value=0.008 Score=66.14 Aligned_cols=153 Identities=14% Similarity=0.298 Sum_probs=100.5
Q ss_pred HHhHHHhcCcEEEEecCCCCCCC--C----------------------CCceEEEeccCCh---HHHHHHHHHHHhCC--
Q 023408 49 LEGLARNKGILFVAIDQNRPLSD--Q----------------------GPFDIVLHKLTGK---EWRQILEEYRQTHP-- 99 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL~~--Q----------------------gpfDvILHKltd~---~~~~~lq~y~~~hP-- 99 (282)
.+..+++.|+..+-+|-+-.... . ..+|.|+=-.-++ .+...+.++..+++
T Consensus 600 ~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~f 679 (1102)
T PLN02735 600 ASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPP 679 (1102)
T ss_pred HHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccch
Confidence 34567999999998887654322 1 1123332222111 23345666655554
Q ss_pred ------Ce-EEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccC
Q 023408 100 ------EV-TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (282)
Q Consensus 100 ------~v-~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~G 172 (282)
.+ ++--++++++...||..+-+.+.++ .|.+|++..+++ .++..+. ...+.||+|+||...-|
T Consensus 680 a~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~-------GIp~p~~~~v~s-~eea~~~--a~~iGyPvvVKP~~g~g 749 (1102)
T PLN02735 680 SASGNGNVKIWGTSPDSIDAAEDRERFNAILNEL-------KIEQPKGGIARS-EADALAI--AKRIGYPVVVRPSYVLG 749 (1102)
T ss_pred hhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEeCC-HHHHHHH--HHhcCCCeEEEeCCCCC
Confidence 33 4567789999999999999988875 467888877752 2222222 24689999999977444
Q ss_pred CCCceeEEEEeccCccCCC---------CCceeEEEeeeccceEEEEEEEcc
Q 023408 173 SAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 173 sa~SH~Maivf~~~gL~~L---------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
+..|.+|.+++.|... ..|+++|+||.+ |.=+=|-+++|
T Consensus 750 ---G~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~-g~Ei~V~vl~D 797 (1102)
T PLN02735 750 ---GRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSD-ATEIDVDALAD 797 (1102)
T ss_pred ---CCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCC-cEEEEEEEEEC
Confidence 5689999998888531 358999999964 56666677765
No 42
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.10 E-value=0.0034 Score=68.55 Aligned_cols=141 Identities=16% Similarity=0.245 Sum_probs=89.7
Q ss_pred HHhHHHhcCcEEEEecCCCCC-------C-----------------CCCCceEEEeccCChH---HHHHHH--HHHHhCC
Q 023408 49 LEGLARNKGILFVAIDQNRPL-------S-----------------DQGPFDIVLHKLTGKE---WRQILE--EYRQTHP 99 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL-------~-----------------~QgpfDvILHKltd~~---~~~~lq--~y~~~hP 99 (282)
+...+++.|++.+-+|.+-.. . ++..+|+|+-=+.++. ....+. ...+++
T Consensus 33 ~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~- 111 (1066)
T PRK05294 33 ACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEKY- 111 (1066)
T ss_pred HHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHC-
Confidence 455667889999999875421 0 1124555554443221 111111 122333
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCcee
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~ 178 (282)
++.++ =++++++...||..+.+.++++ .+.+|++..+++ .+++.+.. ..+.||+|+||.... .+..
T Consensus 112 Gv~~~g~~~~~i~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s-~~e~~~~~--~~ig~PvVVKP~~g~---gg~G 178 (1066)
T PRK05294 112 GVELIGAKLEAIDKAEDRELFKEAMKKI-------GLPVPRSGIAHS-MEEALEVA--EEIGYPVIIRPSFTL---GGTG 178 (1066)
T ss_pred CCEEECCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeeeeCC-HHHHHHHH--HHcCCCeEEEcCCCC---CCCC
Confidence 45554 4688999999999999988875 467899998853 22222222 357899999998544 4567
Q ss_pred EEEEeccCccCCC---------CCceeEEEeeec
Q 023408 179 LSLAYDQYSLKKL---------EPPLVLQEFVNH 203 (282)
Q Consensus 179 Maivf~~~gL~~L---------~~P~VlQEFINH 203 (282)
+.++.+++.|... ..++++||||+.
T Consensus 179 v~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G 212 (1066)
T PRK05294 179 GGIAYNEEELEEIVERGLDLSPVTEVLIEESLLG 212 (1066)
T ss_pred eEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccC
Confidence 8899998887532 248999999975
No 43
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=97.07 E-value=0.0023 Score=62.10 Aligned_cols=127 Identities=14% Similarity=0.303 Sum_probs=88.8
Q ss_pred CceEEEeccC---ChHHHHHHHHHHHhCCCeEEeCch-hHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccC---
Q 023408 74 PFDIVLHKLT---GKEWRQILEEYRQTHPEVTVLDPP-YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERD--- 146 (282)
Q Consensus 74 pfDvILHKlt---d~~~~~~lq~y~~~hP~v~VIDP~-~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d--- 146 (282)
.+|+++-=+. +++ ..+|.+.+.. +++.+=+- .+....+|+..+-+.+++. .|.+|++..++..
T Consensus 87 ~~D~vf~~lhG~~GEd--g~iqglle~~-giPy~Gs~~~asal~~DK~~tK~~l~~~-------GIpt~p~~~~~~~~~~ 156 (364)
T PRK14570 87 EIDVVFPIVHGRTGED--GAIQGFLKVM-DIPCVGAGILGSAISINKYFCKLLLKSF-------NIPLVPFIGFRKYDYF 156 (364)
T ss_pred CCCEEEEcCCCCCCCc--CHHHHHHHHc-CCCccCCCHHHHHHHHCHHHHHHHHHHc-------CCCCCCEEEEeccccc
Confidence 5887765553 332 3445555554 67777666 5889999999999988864 4778888887532
Q ss_pred --CCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEEcce
Q 023408 147 --ASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 147 --~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
..+..+.+ ...+.||+|+||....| |..+.+|.+++.|.. .+.++++||||. |.=+-|-|+|+.
T Consensus 157 ~~~~~~~~~~-~~~lg~PviVKP~~~Gs---S~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~--GrEi~v~Vlg~~ 229 (364)
T PRK14570 157 LDKEGIKKDI-KEVLGYPVIVKPAVLGS---SIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE--AREIECSVIGNE 229 (364)
T ss_pred cchHHHHHHH-HHhcCCCEEEEeCCCCC---CCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC--CEEEEEEEECCC
Confidence 11212222 24689999999965433 667999999887753 346899999998 788999999984
No 44
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=96.87 E-value=0.0038 Score=60.91 Aligned_cols=102 Identities=11% Similarity=0.213 Sum_probs=67.6
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEc-cCCCCchHHHHhcCCccceEeeeccccCCCCce
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~-~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH 177 (282)
++.++ -++++++...|+..|.+.+.+.+ |.+|++.... .+..++.+.+ ..+.||+|+||....| |+
T Consensus 99 g~~~~g~~~~~~~~~~dK~~~k~~l~~~g-------Ip~p~~~~~~~~~~~e~~~~~--~~~~~P~VvKP~~g~g---s~ 166 (450)
T PRK06111 99 GIVFIGPSADIIAKMGSKIEARRAMQAAG-------VPVVPGITTNLEDAEEAIAIA--RQIGYPVMLKASAGGG---GI 166 (450)
T ss_pred CCeEECCCHHHHHHhCCHHHHHHHHHHCC-------CCCCCCcCcCcCCHHHHHHHH--HHhCCCEEEEeCCCCC---Cc
Confidence 35544 55888999999999999988753 5566652211 2222222222 3578999999976554 67
Q ss_pred eEEEEeccCccCC-------------CCCceeEEEeeeccceEEEEEEEc
Q 023408 178 ELSLAYDQYSLKK-------------LEPPLVLQEFVNHGGVLFKVYIVG 214 (282)
Q Consensus 178 ~Maivf~~~gL~~-------------L~~P~VlQEFINH~gvLfKVYVIG 214 (282)
.+.++.+++.|.. -..++++||||... .-+-+.+++
T Consensus 167 Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~ 215 (450)
T PRK06111 167 GMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDP-RHIEIQLLA 215 (450)
T ss_pred eEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCC-cEEEEEEEE
Confidence 8999999887752 13589999999843 334554444
No 45
>PRK06524 biotin carboxylase-like protein; Validated
Probab=96.85 E-value=0.0049 Score=62.51 Aligned_cols=114 Identities=14% Similarity=0.142 Sum_probs=76.3
Q ss_pred HHHHHHhCCCeEE-eCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccC-CCCchHHHHhcCCccceEeeec
Q 023408 91 LEEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERD-ASSIPDVVLKAGLTLPLVAKPL 168 (282)
Q Consensus 91 lq~y~~~hP~v~V-IDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d-~~~~~~~l~~agL~fPlI~KPl 168 (282)
+|...+.. .+.+ .=+..++...+||..+-+.++++ .|.+|+++.+..+ ..++.+....+++.||+++||.
T Consensus 118 iQ~lLE~l-GIpy~gP~a~asai~mDK~~tK~l~~~a-------GIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP~ 189 (493)
T PRK06524 118 TEALARQA-GLEVMHPPAELRHRLDSKIVTTRLANEA-------GVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQTP 189 (493)
T ss_pred HHHHHHHC-CCeEECcCHHHHHHhCCHHHHHHHHHHc-------CCCCCCcccccCCCHHHHHHHHHhccCCCcEEEEEC
Confidence 45555554 3454 55567888899999888887654 4678888775322 2222222333459999999999
Q ss_pred cccCCCCceeEEEEeccCccCCC-----C-CceeEEEeeeccceEEEEEEEcc
Q 023408 169 VADGSAKSHELSLAYDQYSLKKL-----E-PPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 169 vA~Gsa~SH~Maivf~~~gL~~L-----~-~P~VlQEFINH~gvLfKVYVIGd 215 (282)
. |+ .|+.+.+|.+++.|... . ..+++|+||++.-+-.=+++-++
T Consensus 190 ~--GG-SS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~GrEitVev~vd~d 239 (493)
T PRK06524 190 Y--GD-SGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIRNVEVCIEACVTRH 239 (493)
T ss_pred C--CC-CCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccCcEEEEEEEEEeCC
Confidence 3 43 58999999998887632 2 46899999987655444555544
No 46
>PLN02735 carbamoyl-phosphate synthase
Probab=96.78 E-value=0.0087 Score=65.85 Aligned_cols=152 Identities=13% Similarity=0.208 Sum_probs=95.0
Q ss_pred HHhHHHhcCcEEEEecCCCCCC------------------------CCCCceEEEeccCCh---HHHHHHH--HHHHhCC
Q 023408 49 LEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGK---EWRQILE--EYRQTHP 99 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL~------------------------~QgpfDvILHKltd~---~~~~~lq--~y~~~hP 99 (282)
+...+++.|+..+-+|.+-... .+..+|.|+-=+-++ .....+. ...+++
T Consensus 49 ~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~- 127 (1102)
T PLN02735 49 ACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKY- 127 (1102)
T ss_pred HHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHC-
Confidence 5667789999999999864211 112456666543222 1111121 122333
Q ss_pred CeEE-eCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCc-cceEeeeccccCCCCce
Q 023408 100 EVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVADGSAKSH 177 (282)
Q Consensus 100 ~v~V-IDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~-fPlI~KPlvA~Gsa~SH 177 (282)
++.+ --++++++...||..+-+.+.++ .+.+|++..+++ .++..+.. ..+. ||+|+||....|+ .
T Consensus 128 GI~~~G~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~eea~~~~--~~iG~yPvVVKP~~~~GG---~ 194 (1102)
T PLN02735 128 GVELIGAKLDAIKKAEDRELFKQAMEKI-------GLKTPPSGIATT-LDECFEIA--EDIGEFPLIIRPAFTLGG---T 194 (1102)
T ss_pred CCEEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeeEeCC-HHHHHHHH--HHhCCCCEEEEeCCCCCC---C
Confidence 3433 35778889999999988888765 477899988853 22222222 2354 9999999886565 3
Q ss_pred eEEEEeccCccCC---------CCCceeEEEeeeccceEEEEEEEcc
Q 023408 178 ELSLAYDQYSLKK---------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 178 ~Maivf~~~gL~~---------L~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
.+.++.+++.|.. ...++++||||.. ..=|=|=|++|
T Consensus 195 Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G-~kE~ev~Vl~D 240 (1102)
T PLN02735 195 GGGIAYNKEEFETICKAGLAASITSQVLVEKSLLG-WKEYELEVMRD 240 (1102)
T ss_pred ceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCC-CeEEEEEEEEc
Confidence 6679999888752 2358999999963 33344556654
No 47
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=96.77 E-value=0.0046 Score=60.52 Aligned_cols=102 Identities=11% Similarity=0.247 Sum_probs=69.0
Q ss_pred CeE-EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEeeeccccCCCCc
Q 023408 100 EVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (282)
Q Consensus 100 ~v~-VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--vi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 176 (282)
++. +--++++++.+.|+..|.+.+.+.+ |.+|++. .++ +.+++.+. ...+.||+|+||....| |
T Consensus 99 gi~~~g~~~~~~~~~~DK~~~r~~l~~~g-------Ip~pp~~~~~v~-~~~~~~~~--~~~~g~PvvvKP~~g~g---s 165 (451)
T PRK08591 99 GFTFIGPSAETIRLMGDKVTAKATMKKAG-------VPVVPGSDGPVD-DEEEALAI--AKEIGYPVIIKATAGGG---G 165 (451)
T ss_pred CCceECcCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEECCCCC---C
Confidence 344 3468899999999999999988753 5566652 343 22222222 23678999999977644 6
Q ss_pred eeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEEcc
Q 023408 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 177 H~Maivf~~~gL~~L-------------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..+.++.+++.|.+. .+++++||||.. +.-|=|-|+||
T Consensus 166 ~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~d 216 (451)
T PRK08591 166 RGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLEN-PRHIEIQVLAD 216 (451)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC-CcEEEEEEEEc
Confidence 788899998877521 357999999974 44455555554
No 48
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=96.77 E-value=0.013 Score=64.71 Aligned_cols=104 Identities=10% Similarity=0.192 Sum_probs=70.5
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEE-EccCCCCchHHHHhcCCccceEeeeccccCCCCce
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV-IERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vv-i~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH 177 (282)
.+.++ -++++++.+.|+..+.+.+.+.+ |.+|++.. ...+.++..+.. ..+.||+|+||....| +.
T Consensus 99 Gi~fiGps~e~i~~~~DK~~ar~la~~~G-------VPvpp~t~~~v~~~eea~~~a--e~iGyPvIVKP~~GGG---Gr 166 (1143)
T TIGR01235 99 GIIFIGPKAEVMDQLGDKVAARNLAIKAG-------VPVVPGTDGPPETMEEVLDFA--AAIGYPVIIKASWGGG---GR 166 (1143)
T ss_pred CCcccCCCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCcccCcCCHHHHHHHH--HHcCCCEEEEECCCCC---CC
Confidence 45544 55889999999999999887653 55666532 111222222222 3578999999966544 67
Q ss_pred eEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEEcce
Q 023408 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 178 ~Maivf~~~gL~~L-------------~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
.|.+|.+++.|... ..++++|+||.. +.=+-|-|+||.
T Consensus 167 G~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g-~reIeVqVlgD~ 217 (1143)
T TIGR01235 167 GMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIER-PRHIEVQLLGDK 217 (1143)
T ss_pred ccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCC-CeEEEEEEEEeC
Confidence 89999998877421 358999999964 455778888775
No 49
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=96.71 E-value=0.016 Score=63.30 Aligned_cols=141 Identities=15% Similarity=0.238 Sum_probs=91.4
Q ss_pred HHhHHHhcCcEEEEecCCCCCC------------------------CCCCceEEEeccCChH---HHHHH--HHHHHhCC
Q 023408 49 LEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGKE---WRQIL--EEYRQTHP 99 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL~------------------------~QgpfDvILHKltd~~---~~~~l--q~y~~~hP 99 (282)
++..+++.|+..|-+|.+-... ++..+|.|+-=+.++. ....+ +...+++
T Consensus 32 ~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~- 110 (1050)
T TIGR01369 32 ACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKY- 110 (1050)
T ss_pred HHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHC-
Confidence 5567788899999998875310 1134566654332221 11111 1223333
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCcee
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~ 178 (282)
++.++ -++++++...||..+.+.+.++ .+.+|++..+++. ++..+. ...+.||+|+||...- .+..
T Consensus 111 Gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s~-~e~~~~--~~~igyPvIVKP~~g~---gg~G 177 (1050)
T TIGR01369 111 GVEVLGTPVEAIKKAEDRELFREAMKEI-------GEPVPESEIAHSV-EEALAA--AKEIGYPVIVRPAFTL---GGTG 177 (1050)
T ss_pred CCEEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCeeecCCH-HHHHHH--HHHhCCCeEEECCCCC---CCCC
Confidence 55554 7789999999999999998875 4678999888532 222222 2357899999998544 4566
Q ss_pred EEEEeccCccCCC-------C--CceeEEEeeec
Q 023408 179 LSLAYDQYSLKKL-------E--PPLVLQEFVNH 203 (282)
Q Consensus 179 Maivf~~~gL~~L-------~--~P~VlQEFINH 203 (282)
+.++.+++.|... . .++++||||..
T Consensus 178 v~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G 211 (1050)
T TIGR01369 178 GGIAYNREELKEIAERALSASPINQVLVEKSLAG 211 (1050)
T ss_pred eEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccC
Confidence 7899998877532 1 58999999985
No 50
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=96.71 E-value=0.005 Score=60.57 Aligned_cols=102 Identities=11% Similarity=0.230 Sum_probs=67.8
Q ss_pred CeE-EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEeeeccccCCCCc
Q 023408 100 EVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (282)
Q Consensus 100 ~v~-VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--vi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 176 (282)
++. +--++++++.+.|+..+.+.+.+. .|.+|++. .++ +.++..+.. ..+.||+|+||....| |
T Consensus 99 Gi~~~g~~~~~~~~~~DK~~~r~~l~~~-------gip~pp~~~~~~~-~~~e~~~~~--~~ig~PvvvKP~~g~g---s 165 (449)
T TIGR00514 99 GFTFIGPSAESIRLMGDKVSAIETMKKA-------GVPCVPGSDGLVE-DEEENVRIA--KRIGYPVIIKATAGGG---G 165 (449)
T ss_pred CCcEECcCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccCcC-CHHHHHHHH--HHhCCCEEEEeCCCCC---C
Confidence 454 346789999999999999998875 35566553 232 222222222 3578999999988665 5
Q ss_pred eeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEEcc
Q 023408 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 177 H~Maivf~~~gL~~L-------------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..+.++.+++.|... ..++++||||.. +.-|=|-|++|
T Consensus 166 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~d 216 (449)
T TIGR00514 166 RGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIEN-PRHVEIQVLAD 216 (449)
T ss_pred CccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCC-CeEEEEEEEEc
Confidence 678889998777421 357999999964 33344444443
No 51
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=96.61 E-value=0.0049 Score=61.29 Aligned_cols=100 Identities=18% Similarity=0.277 Sum_probs=69.4
Q ss_pred EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEE
Q 023408 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (282)
Q Consensus 103 VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--vi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Ma 180 (282)
+--++++++.+.|+..+-+.+.+.. |.+|++. .+. +.++..+.. ..+.||+|+||....| +..|.
T Consensus 106 igps~~ai~~~~DK~~~r~~l~~~G-------Ip~~p~~~~~v~-~~~e~~~~~--~~igyPvvvKp~~ggg---g~Gv~ 172 (467)
T PRK12833 106 VGPDAQTIRTMGDKARARRTARRAG-------VPTVPGSDGVVA-SLDAALEVA--ARIGYPLMIKAAAGGG---GRGIR 172 (467)
T ss_pred cCCCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCcCcCcC-CHHHHHHHH--HHhCCCEEEEECCCCC---CCeEE
Confidence 3456789999999999999888753 5566554 343 222222222 3578999999977554 67899
Q ss_pred EEeccCccCC------------C-CCceeEEEeeeccceEEEEEEEcce
Q 023408 181 LAYDQYSLKK------------L-EPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 181 ivf~~~gL~~------------L-~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
++.+++.|.. . ..++++|+||..+ .=+=|-|+||.
T Consensus 173 ~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~-~ei~v~v~~dg 220 (467)
T PRK12833 173 VAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARA-RHIEVQILGDG 220 (467)
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC-EEEEEEEEeCC
Confidence 9999888753 1 4679999999863 55556666763
No 52
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=96.59 E-value=0.023 Score=56.16 Aligned_cols=137 Identities=12% Similarity=0.201 Sum_probs=85.8
Q ss_pred chhHHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCChHHHHHHHHHHHhCCCeEEeCchh-HHhhhcCHHHHHHHH
Q 023408 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPY-AIQHLHNRQSMLQCV 123 (282)
Q Consensus 45 ~~~~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~-ai~~L~nR~~ml~~l 123 (282)
....+.++|++.++++|-+..+.++ .+-+-+..++. .+.++-|-. +.+...||..+-+.+
T Consensus 56 d~~~l~~~a~~~~iD~Vv~g~E~~l------------------~~glad~~~~~-Gip~~Gp~~~aa~le~dK~~~K~~l 116 (426)
T PRK13789 56 DKSSVQSFLKSNPFDLIVVGPEDPL------------------VAGFADWAAEL-GIPCFGPDSYCAQVEGSKHFAKSLM 116 (426)
T ss_pred CHHHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHHc-CCCcCCCHHHHHHHHcCHHHHHHHH
Confidence 4445667777777777665443332 23333333333 466666553 556678899888888
Q ss_pred HhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC----C--------
Q 023408 124 ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK----L-------- 191 (282)
Q Consensus 124 ~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~----L-------- 191 (282)
.+. .|.+|++..++ +.++..+.+. .+.||+|+||.- .+.+..+.++.+.+.+.+ +
T Consensus 117 ~~~-------gIpt~~~~~~~-~~~ea~~~~~--~~~~PvVVKp~~---~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~ 183 (426)
T PRK13789 117 KEA-------KIPTASYKTFT-EYSSSLSYLE--SEMLPIVIKADG---LAAGKGVTVATEKKMAKRALKEIFKDKKFGQ 183 (426)
T ss_pred HHc-------CCCCCCeEeeC-CHHHHHHHHH--hcCCCEEEEeCC---CCCCCcEEEECCHHHHHHHHHHHHhhccccC
Confidence 864 46788888775 2222233332 468999999973 345778899999766531 1
Q ss_pred -CCceeEEEeeeccceEEEEEEEcc
Q 023408 192 -EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 192 -~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
...+|+|||+.- .=|=|.+++|
T Consensus 184 ~~~~vlIEEfl~G--~E~Sv~~~~d 206 (426)
T PRK13789 184 SGNQVVIEEFMEG--QEASIFAISD 206 (426)
T ss_pred CCCeEEEEECcCC--eEEEEEEEEC
Confidence 137999999973 5555655544
No 53
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=96.53 E-value=0.01 Score=62.79 Aligned_cols=89 Identities=13% Similarity=0.234 Sum_probs=60.6
Q ss_pred cccCCceEEEccCCCCchHHHHhcCC-ccceEeeeccccCCCCceeEEEEec---cCccC-------CCCCceeEEEeee
Q 023408 134 KVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVADGSAKSHELSLAYD---QYSLK-------KLEPPLVLQEFVN 202 (282)
Q Consensus 134 ~i~vP~~vvi~~d~~~~~~~l~~agL-~fPlI~KPlvA~Gsa~SH~Maivf~---~~gL~-------~L~~P~VlQEFIN 202 (282)
.|.||.+.++.... +..+... .+ .+|+|+||.-..++. ...++.+ .+.+. .-...+++|+||.
T Consensus 487 GIPVP~g~~~~~~~-~a~~~~~--~~~g~PVVVKP~~g~~G~---GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~ 560 (737)
T TIGR01435 487 GFRVPFGDEFSSQA-LALEAFS--LFENKAIVVKPKSTNYGL---GITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP 560 (737)
T ss_pred CcCCCCEEEECCHH-HHHHHHH--HhcCCCEEEeeCCCCCcC---CeEEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 58899999885321 1112221 23 689999999866543 3445544 33332 1235799999996
Q ss_pred ccceEEEEEEEcceEEEEEecCCCCCCc
Q 023408 203 HGGVLFKVYIVGEAIKVVRRFSLPDVTK 230 (282)
Q Consensus 203 H~gvLfKVYVIGd~v~vv~R~SLpN~~~ 230 (282)
|.=|-|+|||+++..+.+.--+|+--
T Consensus 561 --G~EyRv~VIg~kvvaa~~R~Pa~ViG 586 (737)
T TIGR01435 561 --GTEYRFFVLNDKVEAVLLRVPANVTG 586 (737)
T ss_pred --CCEEEEEEECCeEEEEEEECCCCEEE
Confidence 89999999999998887777787753
No 54
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=96.48 E-value=0.0084 Score=60.52 Aligned_cols=103 Identities=12% Similarity=0.274 Sum_probs=71.5
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEE--EccCCCCchHHHHhcCCccceEeeeccccCCCCc
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vv--i~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 176 (282)
++.++ -++++++.+.|+..+-+.+++. .|.+|+... ++ +.++..+. ...+.||+|+||....| +
T Consensus 99 gi~~iGps~~~i~~~~DK~~~k~~l~~~-------GVpv~p~~~~~v~-~~~e~~~~--a~~igyPvvIKp~~GgG---G 165 (499)
T PRK08654 99 GIVFIGPSSDVIEAMGSKINAKKLMKKA-------GVPVLPGTEEGIE-DIEEAKEI--AEEIGYPVIIKASAGGG---G 165 (499)
T ss_pred CCcEECCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCCcCcCCC-CHHHHHHH--HHHhCCCEEEEeCCCCC---C
Confidence 56655 4589999999999999988875 355555543 32 22222222 23578999999976554 6
Q ss_pred eeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEEcce
Q 023408 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 177 H~Maivf~~~gL~~L-------------~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
..|.++.+++.|... ..++++|+||.. +.-+-|-|+||.
T Consensus 166 ~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~-~r~ieVqvl~d~ 217 (499)
T PRK08654 166 IGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEK-PRHIEIQILADK 217 (499)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCC-CcEEEEEEEEcC
Confidence 799999998887421 358999999975 344677777664
No 55
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.48 E-value=0.018 Score=63.09 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=93.6
Q ss_pred HHhHHHhcCcEEEEecCCCCCC------------------------CCCCceEEEeccCCh---HHHHHHH--HHHHhCC
Q 023408 49 LEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGK---EWRQILE--EYRQTHP 99 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL~------------------------~QgpfDvILHKltd~---~~~~~lq--~y~~~hP 99 (282)
+...+++.|+..+-+|.+-... ....+|.|+-=+-++ .....+. ...+++
T Consensus 33 ~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~- 111 (1068)
T PRK12815 33 ACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQY- 111 (1068)
T ss_pred HHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHC-
Confidence 5566688899998888664210 112456666433222 1111111 122333
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCcee
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~ 178 (282)
++.++ -++++++...||..+-+.++++ .+.+|+++.+++ .++..+.. ..+.||+|+||....| +..
T Consensus 112 gv~l~g~~~~~i~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~ee~~~~~--~~igyPvVVKP~~g~g---G~G 178 (1068)
T PRK12815 112 GVELLGTNIEAIQKGEDRERFRALMKEL-------GEPVPESEIVTS-VEEALAFA--EKIGFPIIVRPAYTLG---GTG 178 (1068)
T ss_pred CCEEECCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCceeeCC-HHHHHHHH--HHcCCCEEEEECcCCC---CCc
Confidence 45554 5778999999999999988875 466899998853 22222222 3578999999986555 455
Q ss_pred EEEEeccCccCCC---------CCceeEEEeeeccceEEEEEEEcc
Q 023408 179 LSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 179 Maivf~~~gL~~L---------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
+.++.+++.|... ..++++||||+.. .=|=|=|++|
T Consensus 179 v~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~-~E~sv~v~rD 223 (1068)
T PRK12815 179 GGIAENLEELEQLFKQGLQASPIHQCLLEESIAGW-KEIEYEVMRD 223 (1068)
T ss_pred eEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCC-eEEEEEEEEc
Confidence 6789998877421 1489999999753 2233445544
No 56
>PLN02257 phosphoribosylamine--glycine ligase
Probab=96.38 E-value=0.027 Score=55.97 Aligned_cols=125 Identities=14% Similarity=0.163 Sum_probs=82.4
Q ss_pred hHHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCChHHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHh
Q 023408 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVAD 125 (282)
Q Consensus 47 ~~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~ 125 (282)
..+..+|++.++++|-+..+.|+ ...+.+..+++ .+.++ -+.++++...||..+-+.+.+
T Consensus 52 ~~l~~~a~~~~id~vvvg~E~~l------------------v~~~~d~l~~~-Gi~~~Gps~~aa~l~~dK~~~K~~l~~ 112 (434)
T PLN02257 52 AAVISFCRKWGVGLVVVGPEAPL------------------VAGLADDLVKA-GIPTFGPSAEAAALEGSKNFMKDLCDK 112 (434)
T ss_pred HHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHHC-CCCEECChHHHHHHHcCHHHHHHHHHH
Confidence 34667788777777665544333 22333343443 45555 556788888999999998886
Q ss_pred ccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------------CC
Q 023408 126 MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------------LE 192 (282)
Q Consensus 126 l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------------L~ 192 (282)
. .|.+|++..++ +.++..+.+ ..+.||+|+||.-. ..+..+.++.+.+.+.+ ..
T Consensus 113 ~-------GIptp~~~~~~-~~~e~~~~~--~~~g~PvVVKp~~~---~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~ 179 (434)
T PLN02257 113 Y-------KIPTAKYETFT-DPAAAKKYI--KEQGAPIVVKADGL---AAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAG 179 (434)
T ss_pred c-------CCCCCCeEEeC-CHHHHHHHH--HHcCCCEEEEcCCC---CCCCCEEEECCHHHHHHHHHHHHhhhhccCCC
Confidence 5 47789988875 222222222 35789999999833 35678999998666531 13
Q ss_pred CceeEEEeeec
Q 023408 193 PPLVLQEFVNH 203 (282)
Q Consensus 193 ~P~VlQEFINH 203 (282)
.++++||||.-
T Consensus 180 ~~vlIEefi~G 190 (434)
T PLN02257 180 SEVVVEEFLDG 190 (434)
T ss_pred CeEEEEECCCC
Confidence 58999999973
No 57
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=96.19 E-value=0.07 Score=52.97 Aligned_cols=142 Identities=9% Similarity=0.090 Sum_probs=84.2
Q ss_pred hhHHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCChHHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHH
Q 023408 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVA 124 (282)
Q Consensus 46 ~~~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~ 124 (282)
.+.++++|++.++++|-.-.+.+|. .....++.+. .+.++ .+.++++...|+..|.+.+.
T Consensus 54 ~e~l~~~~~~~~id~Vi~~~d~~l~-----------------~~~~~~l~~~--Gi~v~gps~~~a~~e~dK~~~k~~l~ 114 (435)
T PRK06395 54 YDLIEDFALKNNVDIVFVGPDPVLA-----------------TPLVNNLLKR--GIKVASPTMEAAMIETSKMFMRYLME 114 (435)
T ss_pred HHHHHHHHHHhCCCEEEECCChHHH-----------------HHHHHHHHHC--CCcEECCCHHHHHHhhCHHHHHHHHH
Confidence 3456778888887666544433331 1122233333 56665 77889999999999999887
Q ss_pred hccccCCCCcccCC-ceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEecc-Cc----cC------CCC
Q 023408 125 DMNLSNSYGKVDVP-RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ-YS----LK------KLE 192 (282)
Q Consensus 125 ~l~~~~~~~~i~vP-~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~-~g----L~------~L~ 192 (282)
+. .|.+| .+..+.++ .+..... ..+.||+|+||.-..|+ -.|.++.+. +. +. +-.
T Consensus 115 ~~-------gIptp~~~~~~~~~-~e~~~~~--~~~~~PvVVKP~~~sgg---kGV~v~~~~~~~~~ea~~~~~~~~~~~ 181 (435)
T PRK06395 115 RH-------NIPGNINFNACFSE-KDAARDY--ITSMKDVAVKPIGLTGG---KGVKVTGEQLNSVDEAIRYAIEILDRD 181 (435)
T ss_pred HC-------CcCCCcccceeCCh-HHHHHHH--HhhCCCEEEEeCCCCCC---CCeEEecCchhhHHHHHHHHHHHhCCC
Confidence 64 46676 44344322 2222222 34589999999776654 466677532 12 21 123
Q ss_pred CceeEEEeeeccceEEEEEEEcceEEE
Q 023408 193 PPLVLQEFVNHGGVLFKVYIVGEAIKV 219 (282)
Q Consensus 193 ~P~VlQEFINH~gvLfKVYVIGd~v~v 219 (282)
.++|+|||+.---+=.=+|+=|+.+.+
T Consensus 182 ~~viIEEfl~G~E~Svd~~~dg~~~~~ 208 (435)
T PRK06395 182 GVVLIEKKMTGEEFSLQAFSDGKHLSF 208 (435)
T ss_pred CcEEEEeecCCceEEEEEEEcCCeEEE
Confidence 589999999633333344556666644
No 58
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.13 E-value=0.078 Score=56.31 Aligned_cols=151 Identities=12% Similarity=0.063 Sum_probs=100.2
Q ss_pred hHHHhcCcEEEEecCCCCC----C---------------------C-CCCceEEEeccC---ChHHHHHHHHHHHhCCCe
Q 023408 51 GLARNKGILFVAIDQNRPL----S---------------------D-QGPFDIVLHKLT---GKEWRQILEEYRQTHPEV 101 (282)
Q Consensus 51 ~~~~~~Gi~fV~ID~~~pL----~---------------------~-QgpfDvILHKlt---d~~~~~~lq~y~~~hP~v 101 (282)
...++.|.+.++||.++.= . + ...+|+++-=+. +++ ..+|.+.+.. ++
T Consensus 477 ~al~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~lhG~~ged--g~iq~~le~~-gi 553 (809)
T PRK14573 477 KYLSPEFYDVSYFLINRQGLWETVSSLETAIEEDSGKSVLSSEIAQALAKVDVVLPILHGPFGED--GTMQGFLEII-GK 553 (809)
T ss_pred HhhcccCcEEEEEEECCCCeEEecccccccccccccccccchhhhhccccCCEEEEcCCCCCCCC--hHHHHHHHHc-CC
Confidence 3446679999998887630 0 0 024676654443 332 2345555444 35
Q ss_pred EEeC-chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC-----CCchHHHHhcCCccceEeeeccccCCCC
Q 023408 102 TVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-----SSIPDVVLKAGLTLPLVAKPLVADGSAK 175 (282)
Q Consensus 102 ~VID-P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~-----~~~~~~l~~agL~fPlI~KPlvA~Gsa~ 175 (282)
+.+= +..+....+||..+-+.+++. .|.+|+++.++... ....... ...+.||+|+||.-..|
T Consensus 554 py~Gs~~~asal~~DK~~~K~~l~~~-------GIpt~~~~~~~~~~~~~~~~~~~~~~-~~~lg~P~iVKP~~~Gs--- 622 (809)
T PRK14573 554 PYTGPSLAFSAIAMDKVLTKRFASDV-------GVPVVPYQPLTLAGWKREPELCLAHI-VEAFSFPMFVKTAHLGS--- 622 (809)
T ss_pred CeeCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhcccChHHHHHHH-HHhcCCCEEEeeCCCCC---
Confidence 5543 667788899999988888764 47889998885311 1111111 34689999999988654
Q ss_pred ceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEEcce
Q 023408 176 SHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 176 SH~Maivf~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
|-.+.+|.+++.|.. .+.+++++|||. +|.=|=|-|+|+.
T Consensus 623 S~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~vl~~~ 669 (809)
T PRK14573 623 SIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL-GSREIEVSCLGDG 669 (809)
T ss_pred CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEEEeCC
Confidence 467889999888752 356899999986 5677888899875
No 59
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=95.98 E-value=0.034 Score=55.57 Aligned_cols=103 Identities=10% Similarity=0.192 Sum_probs=68.8
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCc-eEEEc-cCCCCchHHHHhcCCccceEeeeccccCCCCc
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR-QLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~-~vvi~-~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 176 (282)
++.++ -++++++.+.|+..+.+.+.+.+ |.+|+ +..+. .+.+++.+. ...+.||+|+||....| +
T Consensus 98 Gi~~iGps~~~i~~~~DK~~~k~~l~~~g-------Ipvpp~~~~~~~~~~~~~~~~--~~~igyPvvvKP~~ggG---g 165 (478)
T PRK08463 98 GIIFIGPKSEVIRKMGNKNIARYLMKKNG-------IPIVPGTEKLNSESMEEIKIF--ARKIGYPVILKASGGGG---G 165 (478)
T ss_pred CCceecCCHHHHHhhCcHHHHHHHHHHcC-------CCCCCCccccCCCCHHHHHHH--HHHhCCCEEEEeCCCCC---C
Confidence 46655 55899999999999999988753 45544 33332 122222222 23578999999977654 6
Q ss_pred eeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEEcc
Q 023408 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 177 H~Maivf~~~gL~~L-------------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..|.++.+++.|... +.++++|+||..+ .-+-+-|+||
T Consensus 166 ~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~-~~iev~v~~d 216 (478)
T PRK08463 166 RGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNP-RHIEFQILGD 216 (478)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC-eEEEEEEEEc
Confidence 788999998887431 3589999999753 3234445655
No 60
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=95.78 E-value=0.032 Score=55.61 Aligned_cols=102 Identities=11% Similarity=0.203 Sum_probs=67.6
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEE--EccCCCCchHHHHhcCCccceEeeeccccCCCCc
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vv--i~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 176 (282)
++.++ -++++++.+.|+..+.+.+.+.. |.+|++.. ++ +.++..+. ...+.||+|+||....| +
T Consensus 98 Gi~~igps~~~i~~~~DK~~~r~~l~~~G-------Ip~pp~~~~~~~-~~~e~~~~--~~~igyPvvvKp~~ggG---g 164 (472)
T PRK07178 98 GIKFIGPSAEVIRRMGDKTEARRAMIKAG-------VPVTPGSEGNLA-DLDEALAE--AERIGYPVMLKATSGGG---G 164 (472)
T ss_pred CCCccCCCHHHHHHhcCHHHHHHHHHHCC-------CCCCCCcCcCCC-CHHHHHHH--HHHcCCcEEEEeCCCCC---C
Confidence 45544 56899999999999999888753 55655542 22 22222222 24578999999977554 6
Q ss_pred eeEEEEeccCccCC------------C-CCceeEEEeeeccceEEEEEEEcc
Q 023408 177 HELSLAYDQYSLKK------------L-EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 177 H~Maivf~~~gL~~------------L-~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..|.++.+++.|.. . ..++++|+||..+ .=+=|-|+||
T Consensus 165 ~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~-~eiev~v~~d 215 (472)
T PRK07178 165 RGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNP-KHIEVQILAD 215 (472)
T ss_pred CCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCC-eEEEEEEEEE
Confidence 78999999888753 1 3579999999643 3344444443
No 61
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.69 E-value=0.015 Score=64.35 Aligned_cols=102 Identities=15% Similarity=0.276 Sum_probs=68.8
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEeeeccccCCCCc
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--vi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 176 (282)
++.++ -++++++.+.|+..+.+.+.+.. |.+|+.. .+. +.+++.+. ...+.||+|+||....| +
T Consensus 103 Gi~fiGps~eai~~~~DK~~~r~~l~~~G-------VPv~P~~~~~v~-s~eea~~~--a~~iGyPvVVKP~~GgG---G 169 (1146)
T PRK12999 103 GITFIGPTAEVLRLLGDKVAARNAAIKAG-------VPVIPGSEGPID-DIEEALEF--AEEIGYPIMLKASAGGG---G 169 (1146)
T ss_pred CCcccCCCHHHHHHhCCHHHHHHHHHHCC-------CCCCCCcccCCC-CHHHHHHH--HHHhCCCEEEEECCCCC---C
Confidence 45544 55889999999999999888653 4454433 232 22222222 23578999999987665 6
Q ss_pred eeEEEEeccCccCC------------C-CCceeEEEeeeccceEEEEEEEcc
Q 023408 177 HELSLAYDQYSLKK------------L-EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 177 H~Maivf~~~gL~~------------L-~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..|.+|.+++.|.. + ..++++|+||.. +.-+=|-|+||
T Consensus 170 rGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g-~~~ieVqvl~D 220 (1146)
T PRK12999 170 RGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN-PRHIEVQILGD 220 (1146)
T ss_pred CCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC-CeEEEEEEEEE
Confidence 88999999887742 1 368999999974 33355556654
No 62
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=95.61 E-value=0.12 Score=55.14 Aligned_cols=186 Identities=23% Similarity=0.299 Sum_probs=118.7
Q ss_pred CcEEEEEEechhhhhccchhH-HHhHHHhcCcEEEE----ecCCCCCCCCCCceEEEeccCChHHHHHHHHHHHhCCCeE
Q 023408 28 KLVVVGYALTSKKTKSFLQPK-LEGLARNKGILFVA----IDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVT 102 (282)
Q Consensus 28 ~~~~VGy~l~~KK~~sf~~~~-l~~~~~~~Gi~fV~----ID~~~pL~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~ 102 (282)
+..+||.|.-+||.++==-.. +..++.-.=|+.|- +=++.|.+.=--.|++|-=-+.-==....+.|.+-.-. .
T Consensus 39 r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRnP-F 117 (1018)
T KOG1057|consen 39 RQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNP-F 117 (1018)
T ss_pred cceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhcCC-e
Confidence 346999999999876532111 22333322233321 22444555545667766544432123456788876533 4
Q ss_pred EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCC--chHHHH------hcC--CccceEeeeccccC
Q 023408 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS--IPDVVL------KAG--LTLPLVAKPLVADG 172 (282)
Q Consensus 103 VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~--~~~~l~------~ag--L~fPlI~KPlvA~G 172 (282)
||.-++-.+.|+||...|+.|+.. .|.+|++..++.+..+ .-..+. -.| ..=|+|-||+-|
T Consensus 118 viNdL~mQyll~DRR~Vy~iLe~~-------gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~-- 188 (1018)
T KOG1057|consen 118 VINDLDMQYLLQDRREVYSILEAE-------GIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSA-- 188 (1018)
T ss_pred eeccccHHHHHHHHHHHHHHHHHc-------CCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCc--
Confidence 677788999999999999998863 5778999888765421 111111 123 345999999964
Q ss_pred CCCceeEEEEecc---CccCCC-------------------CCceeEEEeeeccceEEEEEEEcceEE-EEEecCC
Q 023408 173 SAKSHELSLAYDQ---YSLKKL-------------------EPPLVLQEFVNHGGVLFKVYIVGEAIK-VVRRFSL 225 (282)
Q Consensus 173 sa~SH~Maivf~~---~gL~~L-------------------~~P~VlQEFINH~gvLfKVYVIGd~v~-vv~R~SL 225 (282)
+-|..+|-|-. .|-..| ..-.+.-||.+-+|.--|||-||-.+. .-.|+|.
T Consensus 189 --EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSP 262 (1018)
T KOG1057|consen 189 --EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP 262 (1018)
T ss_pred --ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhhccCc
Confidence 78999998862 122111 235899999999999999999996554 4667774
No 63
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=95.00 E-value=0.13 Score=49.72 Aligned_cols=117 Identities=15% Similarity=0.246 Sum_probs=78.1
Q ss_pred ceEEEeccCChHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHH
Q 023408 75 FDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVV 154 (282)
Q Consensus 75 fDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l 154 (282)
+|+|+-..+.+...+.-++|.+.-=.+.+-...+.++.+.|...+++.+++. .+.+|.++.++ +.+++...
T Consensus 67 Idv~~P~~~~~~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~-------~ipvp~~~~v~-t~~el~~a- 137 (329)
T PF15632_consen 67 IDVFVPGRNRELLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEAN-------GIPVPPYWRVR-TADELKAA- 137 (329)
T ss_pred CeEEEcCccHHHHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhC-------CCCCCCEEEeC-CHHHHHHH-
Confidence 3455555554555666677777755666645689999999999999998863 46889999995 22233222
Q ss_pred HhcCCccc---eEeeeccccCCCCceeEEEEe-ccCccCC----------------------CCCceeEEEeeecc
Q 023408 155 LKAGLTLP---LVAKPLVADGSAKSHELSLAY-DQYSLKK----------------------LEPPLVLQEFVNHG 204 (282)
Q Consensus 155 ~~agL~fP---lI~KPlvA~Gsa~SH~Maivf-~~~gL~~----------------------L~~P~VlQEFINH~ 204 (282)
-+.+++| +.+||.+..|+ -..-++. +...+.. --+|+++|||..--
T Consensus 138 -~~~l~~~~~~~CvKP~~g~gg---~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G~ 209 (329)
T PF15632_consen 138 -YEELRFPGQPLCVKPAVGIGG---RGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPGP 209 (329)
T ss_pred -HHhcCCCCceEEEecccCCCc---ceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCCC
Confidence 2356676 99999999886 3445554 2233321 13699999999644
No 64
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=94.90 E-value=0.091 Score=58.57 Aligned_cols=102 Identities=14% Similarity=0.240 Sum_probs=67.6
Q ss_pred CeEE-eCchhHHhhhcCHHHHHHHHHhccccCCCCcccC-CceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCce
Q 023408 100 EVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDV-PRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (282)
Q Consensus 100 ~v~V-IDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~v-P~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH 177 (282)
.+.+ --++++++.+.|+..+-+.+.+. .|.+ |.+..++ +.++..+. ...+.||+|+||....| +.
T Consensus 98 Gi~~iGps~ea~~~~~DK~~ar~ll~~~-------GVPt~p~~~lv~-s~dea~~~--a~~igyPvVVKP~~ggG---G~ 164 (1201)
T TIGR02712 98 GIVFVGPTPEQIRKFGLKHTARELAEAA-------GVPLLPGTGLLS-SLDEALEA--AKEIGYPVMLKSTAGGG---GI 164 (1201)
T ss_pred CCcEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCceeecC-CHHHHHHH--HHhcCCeEEEEECCCCC---CC
Confidence 4443 35689999999999988888765 3555 4354554 22222222 24678999999987654 67
Q ss_pred eEEEEeccCccCC----C---------CCceeEEEeeeccceEEEEEEEcc
Q 023408 178 ELSLAYDQYSLKK----L---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 178 ~Maivf~~~gL~~----L---------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
.|.++.+++.|.. + ..++++||||..+ .=+=|.|+||
T Consensus 165 GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~-~eveV~v~~D 214 (1201)
T TIGR02712 165 GMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENA-RHVEVQIFGD 214 (1201)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC-EEEEEEEEEC
Confidence 8999999887741 1 3479999999843 3444545543
No 65
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=93.83 E-value=0.69 Score=45.69 Aligned_cols=140 Identities=20% Similarity=0.180 Sum_probs=93.3
Q ss_pred HHHhcCcEEEEecCCCCCCC-CCCceEEEeccCChH------------------HHHHHHHHHHhCCCeEEeCchhHHhh
Q 023408 52 LARNKGILFVAIDQNRPLSD-QGPFDIVLHKLTGKE------------------WRQILEEYRQTHPEVTVLDPPYAIQH 112 (282)
Q Consensus 52 ~~~~~Gi~fV~ID~~~pL~~-QgpfDvILHKltd~~------------------~~~~lq~y~~~hP~v~VIDP~~ai~~ 112 (282)
.++..|+.++.+|++.+=.. |--=++|....+|.. |-...-++..++ +.|-=++++++.
T Consensus 19 aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL~~l~~~--~~v~p~~~~l~~ 96 (375)
T COG0026 19 AAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEALEKLAAS--VKVFPSPDALRI 96 (375)
T ss_pred HHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHHHHHHHHhh--cCcCCCHHHHHH
Confidence 44667999999998764332 333345555544431 112223344443 666678999999
Q ss_pred hcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC--
Q 023408 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-- 190 (282)
Q Consensus 113 L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-- 190 (282)
..||...=+.|.++ .+.+|.|.++++ .+++.+.+.. +.||.|.|... |.=+-+.=.+|.+.+++..
T Consensus 97 ~qdR~~eK~~l~~~-------Gi~va~~~~v~~-~~el~~~~~~--~g~p~VlKtr~--gGYDGkGQ~~i~~~~~~~~~~ 164 (375)
T COG0026 97 AQDRLVEKQFLDKA-------GLPVAPFQVVDS-AEELDAAAAD--LGFPAVLKTRR--GGYDGKGQWRIRSDADLELRA 164 (375)
T ss_pred HhhHHHHHHHHHHc-------CCCCCCeEEeCC-HHHHHHHHHH--cCCceEEEecc--ccccCCCeEEeeCcccchhhH
Confidence 99999888888765 477899999963 3355555544 44999999865 3446677788887777653
Q ss_pred -----CCCceeEEEeeeccce
Q 023408 191 -----LEPPLVLQEFVNHGGV 206 (282)
Q Consensus 191 -----L~~P~VlQEFINH~gv 206 (282)
...| |+-+||+=..-
T Consensus 165 ~~~~~~~~~-vlE~fV~F~~E 184 (375)
T COG0026 165 AGLAEGGVP-VLEEFVPFERE 184 (375)
T ss_pred hhhhccCce-eEEeecccceE
Confidence 1335 99999987643
No 66
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=93.43 E-value=1.8 Score=43.88 Aligned_cols=134 Identities=13% Similarity=0.181 Sum_probs=80.2
Q ss_pred hHHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCChHHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHh
Q 023408 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVAD 125 (282)
Q Consensus 47 ~~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~ 125 (282)
..++++|++.++++|-+..+. -..+.+.+..++. .+.++ -+.++++...|+..|-+.+.+
T Consensus 59 ~~l~~~a~~~~id~Vi~g~E~------------------~l~~glad~l~~~-Gi~v~Gps~~aa~le~dK~~~K~~l~~ 119 (486)
T PRK05784 59 EEVKKVAKEVNPDLVVIGPEE------------------PLFAGVADVLREE-GFPVFGASSKCARIEKSKVWARELMWK 119 (486)
T ss_pred HHHHHHHHHhCCCEEEECCch------------------HHHHHHHHHHHhC-CCCEECCcHHHHHHhcCHHHHHHHHHH
Confidence 346778888877766653322 1222333333333 55554 556777888888888777776
Q ss_pred ccccCCCCcccCC-ceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCc---------c----C--
Q 023408 126 MNLSNSYGKVDVP-RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS---------L----K-- 189 (282)
Q Consensus 126 l~~~~~~~~i~vP-~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~g---------L----~-- 189 (282)
. .|.+| ++..++ +.++..+.+. ..+|+|+||.-..| |..+.++.+.+. + .
T Consensus 120 ~-------gIpt~~~~~~~~-~~~ea~~~~~---~~~PvVVKP~~~ag---gkGV~iv~~~~e~~~~~~~ea~~~a~~~~ 185 (486)
T PRK05784 120 Y-------SIPGRLRYKVFY-DVEEAAKFIE---YGGSVAIKPARQAG---GKGVKVIADLQAYLSQEKREALTKSVNDI 185 (486)
T ss_pred c-------CcCCCccceEeC-CHHHHHHHHh---hcCCEEEeeCCCCC---CCCEEEECChhHhcchhHHHHHHHHHHHH
Confidence 4 45665 676664 3223333332 23799999966544 668889988541 1 1
Q ss_pred --------CCCCceeEEEeeeccceEEEEEEEcc
Q 023408 190 --------KLEPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 190 --------~L~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
+-..++|+|||+. |.=|=|.++.|
T Consensus 186 ~~~~~~~g~~~~~VlIEEfL~--G~E~SV~al~d 217 (486)
T PRK05784 186 KEGSAYYKDVEPKILVEEKVD--GVEYTLQVLTD 217 (486)
T ss_pred HHhHhhccCCCCeEEEEEccC--CeEEEEEEEEC
Confidence 1135899999998 44455555543
No 67
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=92.06 E-value=0.21 Score=42.55 Aligned_cols=80 Identities=18% Similarity=0.337 Sum_probs=33.6
Q ss_pred cCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCC-C
Q 023408 114 HNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-E 192 (282)
Q Consensus 114 ~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L-~ 192 (282)
.|...+++.|.++ .|.+|..+.... .....+|+|+||.-.+|+ ..+.++-+++.+... .
T Consensus 2 ~dK~~~~~~L~~~-------gi~~P~~~~~~~----------~~~~~~~~viKp~~G~Gg---~~i~~~~~~~~~~~~~~ 61 (161)
T PF02655_consen 2 SDKLKTYKFLKEL-------GIPVPTTLRDSE----------PEPIDGPWVIKPRDGAGG---EGIRIVDSEDELEEFLN 61 (161)
T ss_dssp TSHHHHHHHHTTT--------S--------EE----------SS--SSSEEEEESS----------B--SS--TTE----
T ss_pred CCHHHHHHHHHcc-------CCCCCCcccccc----------ccccCCcEEEEeCCCCCC---CCeEEECCchhhccccc
Confidence 3677788887764 356783332211 123489999999998885 566677777666532 2
Q ss_pred CceeEEEeeeccceEEEEEEEcc
Q 023408 193 PPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 193 ~P~VlQEFINH~gvLfKVYVIGd 215 (282)
.-.++||||. |.=|=+.++.+
T Consensus 62 ~~~i~Qe~i~--G~~~Sv~~l~~ 82 (161)
T PF02655_consen 62 KLRIVQEFIE--GEPYSVSFLAS 82 (161)
T ss_dssp ---EEEE-----SEEEEEEEEE-
T ss_pred cceEEeeeeC--CEEeEEEEEEe
Confidence 2349999997 55555555553
No 68
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=91.67 E-value=0.51 Score=46.17 Aligned_cols=80 Identities=18% Similarity=0.261 Sum_probs=54.3
Q ss_pred EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEE
Q 023408 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (282)
Q Consensus 103 VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maiv 182 (282)
+.=..++++...||..+-+.+++. .|.+|+++ + +. + .+.||+|+||..+. .+..-.++
T Consensus 111 ~~gn~~~l~~e~dK~~~k~~L~~a-------GIp~p~~~--~-~~----~-----~i~~PvIVKp~~g~---ggkGv~i~ 168 (358)
T PRK13278 111 MFGNREILRWEADRDKERKLLEEA-------GIRIPRKY--E-SP----E-----DIDRPVIVKLPGAK---GGRGYFIA 168 (358)
T ss_pred cCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEe--C-CH----H-----HcCCCEEEEeCCCC---CCCCeEEe
Confidence 434566677788888888777754 46678863 2 11 1 25699999996544 46777788
Q ss_pred eccCccC----CC--------CCceeEEEeeecc
Q 023408 183 YDQYSLK----KL--------EPPLVLQEFVNHG 204 (282)
Q Consensus 183 f~~~gL~----~L--------~~P~VlQEFINH~ 204 (282)
.+++.+. .+ ...+++||||..-
T Consensus 169 ~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G~ 202 (358)
T PRK13278 169 KSPEEFKEKIDKLIERGLITEVEEAIIQEYVVGV 202 (358)
T ss_pred CCHHHHHHHHHHHHhccccCCCCeEEEEecCCCc
Confidence 8866653 11 4689999999744
No 69
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=89.44 E-value=0.79 Score=45.19 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=41.7
Q ss_pred cccCCceEEEccCCCCchHHHHhcCCccceEeeeccccC--CCCceeEEEEeccCccC----CCC----------CceeE
Q 023408 134 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG--SAKSHELSLAYDQYSLK----KLE----------PPLVL 197 (282)
Q Consensus 134 ~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~G--sa~SH~Maivf~~~gL~----~L~----------~P~Vl 197 (282)
.|.+|+.+. ++ ..+.+|+|+||..|.| +..-+ ++.+.+.|. .+. ..+++
T Consensus 138 GI~~Pk~~~---~p---------~eId~PVIVKp~~asG~~srG~f---~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iI 202 (366)
T PRK13277 138 GIPYPKLFK---DP---------EEIDRPVIVKLPEAKRRLERGFF---TASSYEDFYEKSEELIKAGVIDREDLKNARI 202 (366)
T ss_pred CCCCceeec---Cc---------cccCccEEEEECCCCCccccCeE---eeCCHHHHHHHHHhhhhcCccccccccccee
Confidence 577888764 11 3578999999999999 65443 666766554 111 35689
Q ss_pred EEeeeccceEEEEEEE
Q 023408 198 QEFVNHGGVLFKVYIV 213 (282)
Q Consensus 198 QEFINH~gvLfKVYVI 213 (282)
||||.---.=+=+|+-
T Consensus 203 QEyI~G~ey~~d~F~s 218 (366)
T PRK13277 203 EEYVIGAHFNFNYFYS 218 (366)
T ss_pred EeccCCCEEEEEEEEe
Confidence 9999733222334443
No 70
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=89.29 E-value=0.8 Score=46.21 Aligned_cols=124 Identities=17% Similarity=0.272 Sum_probs=78.6
Q ss_pred HHHHHHHHhCCCeEEeCchh-HHhhhcCHHHHHHHHHhccccCCCCcccCCceE-EEccCCCCchHHHHhcCCccceEee
Q 023408 89 QILEEYRQTHPEVTVLDPPY-AIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL-VIERDASSIPDVVLKAGLTLPLVAK 166 (282)
Q Consensus 89 ~~lq~y~~~hP~v~VIDP~~-ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v-vi~~d~~~~~~~l~~agL~fPlI~K 166 (282)
..+.+-.+++- +..+=|.. +++.+-|..+|-+.+.+.. |.+|+.. -.-.+.++..+..++.| ||+|+|
T Consensus 89 ~~fae~~~~~g-l~fiGP~~~~i~~mgdK~~ar~~~~~aG-------VP~vpgs~~~~~~~ee~~~~a~~iG--yPVivK 158 (449)
T COG0439 89 AAFAEACAEAG-LTFIGPSAEAIRRMGDKITARRLMAKAG-------VPVVPGSDGAVADNEEALAIAEEIG--YPVIVK 158 (449)
T ss_pred HHHHHHHHHcC-CeeeCcCHHHHHHhhhHHHHHHHHHHcC-------CCcCCCCCCCcCCHHHHHHHHHHcC--CCEEEE
Confidence 44555566654 88887754 5556668888888877642 3333332 11012233444555666 999999
Q ss_pred eccccCCCCceeEEEEeccCccCC------------CCCc-eeEEEeeeccceEEEEEEEcceE----EEEEec-CCC
Q 023408 167 PLVADGSAKSHELSLAYDQYSLKK------------LEPP-LVLQEFVNHGGVLFKVYIVGEAI----KVVRRF-SLP 226 (282)
Q Consensus 167 PlvA~Gsa~SH~Maivf~~~gL~~------------L~~P-~VlQEFINH~gvLfKVYVIGd~v----~vv~R~-SLp 226 (282)
|...-| +-.|-+|.+++.|.+ +..| +.+++||+.- .=.=|-|+||.. +...|- |+.
T Consensus 159 a~~GgG---g~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~-rhievqv~gD~~g~~i~l~eRdcsiq 232 (449)
T COG0439 159 AAAGGG---GRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGP-RHIEVQVLGDGHGNVIHLGERDCSIQ 232 (449)
T ss_pred ECCCCC---cccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCC-ceEEEEEEEcCcccEEEEEeccCCCc
Confidence 988766 568999999988852 2345 9999999865 223355777654 455565 543
No 71
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=87.78 E-value=6.2 Score=38.14 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=58.3
Q ss_pred HhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCcc-ceEeeeccccCCCCceeEEEEeccCc-
Q 023408 110 IQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGSAKSHELSLAYDQYS- 187 (282)
Q Consensus 110 i~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~f-PlI~KPlvA~Gsa~SH~Maivf~~~g- 187 (282)
...+-|.......+++ ..+.+|+.+++.....+ .+.+.+.--.+ |+|+||+..++-.. +.++-+.+.
T Consensus 32 ~~~~~DK~~t~~lL~~-------aglpvP~T~~~~s~~~~-~~~l~~~~~~~~~VVVKPl~Gs~GrG---I~~i~~~~~~ 100 (317)
T TIGR02291 32 YPLVDDKLKTKIIAQA-------AGITVPELYGVIHNQAE-VKTIHNIVKDHPDFVIKPAQGSGGKG---ILVITSRKDG 100 (317)
T ss_pred ccccccHHHHHHHHHH-------cCCCCCCEEEecCchhh-HHHHHHHHccCCCEEEEECCCCCccC---eEEEEecccc
Confidence 3344455555555443 25889998877533222 22232221245 69999999776533 455543322
Q ss_pred -------------------------cCCCCCc--eeEEEee--eccc---------eEEEEEEEcceEEE-EEecCC
Q 023408 188 -------------------------LKKLEPP--LVLQEFV--NHGG---------VLFKVYIVGEAIKV-VRRFSL 225 (282)
Q Consensus 188 -------------------------L~~L~~P--~VlQEFI--NH~g---------vLfKVYVIGd~v~v-v~R~SL 225 (282)
|-.+..+ ..+|||+ .|.. -=..|+|+|+.+.. ..|.+.
T Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~~R~~~ 177 (317)
T TIGR02291 101 RYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAMMRLPT 177 (317)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEEEEccC
Confidence 1122222 5677887 4421 36899999998875 445443
No 72
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=87.37 E-value=12 Score=36.88 Aligned_cols=153 Identities=16% Similarity=0.231 Sum_probs=95.1
Q ss_pred CCcEEEEEEechhhhhccchhHHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCCh----------HH-HHHHHHHH
Q 023408 27 SKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGK----------EW-RQILEEYR 95 (282)
Q Consensus 27 ~~~~~VGy~l~~KK~~sf~~~~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd~----------~~-~~~lq~y~ 95 (282)
.+.++||. +.+.+...|.+.|+....++.=.|..-++..+.++--.+.. +| .+.++++.
T Consensus 12 ~kiLviGv----------ntR~vveSA~klGf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~ 81 (389)
T COG2232 12 CKILVIGV----------NTRPVVESASKLGFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDLA 81 (389)
T ss_pred ceEEEEee----------cchHhHHHHHhcCeEEEEeEeecccccccccceEEEecChhhcCcccCCCHHHHHHHHHhhh
Confidence 34677774 56678888899999999998887766667777777655443 34 34444444
Q ss_pred HhCCCe---------------------EEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHH
Q 023408 96 QTHPEV---------------------TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVV 154 (282)
Q Consensus 96 ~~hP~v---------------------~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l 154 (282)
... ++ .=.+|-..+..+-||...+..+..+... .|..-. ++.+
T Consensus 82 ~dv-D~~ii~~sg~e~l~~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp-------~p~~~~--------~e~~ 145 (389)
T COG2232 82 EDV-DAPIIPFSGFEALRTSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMP-------EPSEKK--------IEPL 145 (389)
T ss_pred hhc-ceeeeeccccccccccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCC-------CChhhh--------hhhh
Confidence 332 22 1125555777778888888877765432 122111 1222
Q ss_pred HhcCCccceEeeeccccCCCCceeEEEEeccCccCCCCCceeEEEeeeccceEEEEEEEcc
Q 023408 155 LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 155 ~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
. --..++|.||+...|.. .=.+-|+++.- .+++++||||- |+=+-|-+|++
T Consensus 146 ~--~gekt~IlKPv~GaGG~---~el~~~~Ee~~---~~~~i~Qefi~--G~p~Svs~is~ 196 (389)
T COG2232 146 E--EGEKTLILKPVSGAGGL---VELVKFDEEDP---PPGFIFQEFIE--GRPVSVSFISN 196 (389)
T ss_pred h--hcceeeEEeeccCCCce---eeecccccccC---CcceehhhhcC--CceeEEEEEec
Confidence 2 23678999999998864 22222333332 37899999995 55566667776
No 73
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=83.99 E-value=1.1 Score=43.79 Aligned_cols=145 Identities=21% Similarity=0.329 Sum_probs=76.8
Q ss_pred HHhHHHhcCcEEEEec---CCCCCCCCCC-ceEEEeccC--ChHHHHHHHHHHHhCC-----------------------
Q 023408 49 LEGLARNKGILFVAID---QNRPLSDQGP-FDIVLHKLT--GKEWRQILEEYRQTHP----------------------- 99 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID---~~~pL~~Qgp-fDvILHKlt--d~~~~~~lq~y~~~hP----------------------- 99 (282)
-..+||+-|.+|||+- -+.|+...-. +-+-+|--- |+-.++-|.+|.++|-
T Consensus 15 tlalARSfg~~~vpv~~ls~d~plPt~Sr~vr~t~~w~gphd~gaiafLrd~Aekhglkg~LLva~GDgev~lvSq~ree 94 (415)
T COG3919 15 TLALARSFGEEFVPVLALSADGPLPTYSRIVRVTTHWNGPHDEGAIAFLRDFAEKHGLKGYLLVACGDGEVLLVSQYREE 94 (415)
T ss_pred hHHHHHhhccccceEEEEecCCCCcchhhhheeeeccCCCCcccHHHHHHHHHhhcCcCceEEEecCCceeeehHhhHHH
Confidence 4467888888887654 3445554221 112222221 1224455555555542
Q ss_pred -----CeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCC-
Q 023408 100 -----EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGS- 173 (282)
Q Consensus 100 -----~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gs- 173 (282)
+|+. =+-...+.|.+.-.+|+.-++++ +..|+-+.+++..+ . .-..|+||+|.||=..-|.
T Consensus 95 LSa~f~v~l-p~w~~l~wlceKPllY~ra~elg-------l~~P~Ty~v~S~~d----~-~~~el~FPvILKP~mgg~~~ 161 (415)
T COG3919 95 LSAFFEVPL-PDWALLRWLCEKPLLYNRAEELG-------LPYPKTYLVNSEID----T-LVDELTFPVILKPGMGGSVH 161 (415)
T ss_pred HHHHhcCCC-CcHHHHHHHhhCcHHHHHHHHhC-------CCCcceEEecchhh----h-hhhheeeeEEecCCCCCcce
Confidence 2222 22345555556556666655553 56799999973221 1 1357999999999776442
Q ss_pred CCceeEE-EEeccCccC--------CCC-CceeEEEeeeccce
Q 023408 174 AKSHELS-LAYDQYSLK--------KLE-PPLVLQEFVNHGGV 206 (282)
Q Consensus 174 a~SH~Ma-ivf~~~gL~--------~L~-~P~VlQEFINH~gv 206 (282)
..+..=+ .+-+.+.++ ..- --+|+||||.-||-
T Consensus 162 ~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE 204 (415)
T COG3919 162 FEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGE 204 (415)
T ss_pred eehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCc
Confidence 1111111 112222222 112 25999999999864
No 74
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=83.80 E-value=0.89 Score=40.15 Aligned_cols=79 Identities=30% Similarity=0.423 Sum_probs=39.1
Q ss_pred CCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccC--------CCCCceeEEEeeecc--ce
Q 023408 137 VPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK--------KLEPPLVLQEFVNHG--GV 206 (282)
Q Consensus 137 vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~--------~L~~P~VlQEFINH~--gv 206 (282)
+|..++-. +.+.+.+-+++.|= +|+||+.+.|...-+++.- +...++ .-..|+++|+|+.-- |
T Consensus 12 ~P~T~vs~-~~~~i~~f~~~~~~---~VlKPl~g~gG~gV~~i~~--~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~G- 84 (173)
T PF02955_consen 12 IPPTLVSR-DKEEIRAFIEEHGD---IVLKPLDGMGGRGVFRISR--DDPNLNSILETLTKNGERPVMVQPFLPEIKEG- 84 (173)
T ss_dssp S--EEEES--HHHHHHHHHHHSS---EEEEESS--TTTT-EEE-T--T-TTHHHHHHHHTTTTTS-EEEEE--GGGGG--
T ss_pred CcCEEEEC-CHHHHHHHHHHCCC---EEEEECCCCCCcCEEEEcC--CCCCHHHHHHHHHhcCCccEEEEeccccccCC-
Confidence 37766654 44445555555544 9999999999877666543 222222 123589999998843 3
Q ss_pred EEEEE-EEcceEEEEEe
Q 023408 207 LFKVY-IVGEAIKVVRR 222 (282)
Q Consensus 207 LfKVY-VIGd~v~vv~R 222 (282)
=.-+. +=|..++.+.|
T Consensus 85 DkRii~~nG~~~~av~R 101 (173)
T PF02955_consen 85 DKRIILFNGEPSHAVRR 101 (173)
T ss_dssp EEEEEEETTEE-SEEEE
T ss_pred CEEEEEECCEEhHHeec
Confidence 23444 44566666555
No 75
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=83.26 E-value=7.1 Score=39.05 Aligned_cols=97 Identities=18% Similarity=0.360 Sum_probs=63.7
Q ss_pred EEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEE
Q 023408 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (282)
Q Consensus 102 ~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Mai 181 (282)
+|.=++++|+.--||....+.+++++ +.+|..+.-..+ +..+. ...+.||+|+||-..-|+.. -.+
T Consensus 103 vvgs~~eaI~iaeDr~~fke~m~eig-------i~~P~~~~~~~~--e~~~~--~~~ig~PvIVrP~~~lGG~G---~~i 168 (400)
T COG0458 103 VVGSDPEAIEIAEDKKLFKEAMREIG-------IPVPSRIAHSVE--EADEI--ADEIGYPVIVKPSFGLGGSG---GGI 168 (400)
T ss_pred EEecCHHHhhhhhhHHHHHHHHHHcC-------CCCCccccccHH--HHhhh--HhhcCCCEEEecCcCCCCCc---eeE
Confidence 46788999999999999999999874 556733221111 11122 23467999999999887644 478
Q ss_pred EeccCccCCC-------C--CceeEEEeeeccceEEEEEEE
Q 023408 182 AYDQYSLKKL-------E--PPLVLQEFVNHGGVLFKVYIV 213 (282)
Q Consensus 182 vf~~~gL~~L-------~--~P~VlQEFINH~gvLfKVYVI 213 (282)
++|++.|..+ . .+|+++|+|- |...|..=|+
T Consensus 169 ~~n~eel~~~~~~~l~~s~~~~vl~eesi~-G~ke~e~ev~ 208 (400)
T COG0458 169 AYNEEELEEIIEEGLRASPVEEVLIEESII-GWKEFEYEVV 208 (400)
T ss_pred EeCHHHHHHHHHhccccCccccceeeeeec-CceEEEEEEE
Confidence 8897776522 1 3677777765 4445554444
No 76
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=83.26 E-value=0.69 Score=40.67 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=42.7
Q ss_pred cccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC----C-CCceeEEEeeeccce
Q 023408 134 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK----L-EPPLVLQEFVNHGGV 206 (282)
Q Consensus 134 ~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~----L-~~P~VlQEFINH~gv 206 (282)
.+.+|+|..+.+ .+++.+.+ ..+.||+|.|+... .-+-+.-.+|.+++.+.+ + ..||++.+||+...-
T Consensus 5 gip~~~~~~i~~-~~~l~~a~--~~iG~P~vlK~~~~--GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f~~E 77 (172)
T PF02222_consen 5 GIPTAPYATIDS-LEDLEEAA--ESIGFPAVLKTRRG--GYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPFDRE 77 (172)
T ss_dssp T--B-EEEEESS-HHHHHHHH--HHHTSSEEEEESSS--SCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---ESEE
T ss_pred CCCCCCeEEECC-HHHHHHHH--HHcCCCEEEEccCc--CcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccCCcEE
Confidence 578999999963 22333332 35799999997543 234556678899888874 3 569999999998743
No 77
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=80.73 E-value=3.2 Score=37.45 Aligned_cols=88 Identities=13% Similarity=0.339 Sum_probs=51.8
Q ss_pred CHHHHHHHHHhccccCCCCcccCCceEEE-ccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCC--
Q 023408 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-- 191 (282)
Q Consensus 115 nR~~ml~~l~~l~~~~~~~~i~vP~~vvi-~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L-- 191 (282)
||....+.+.+++ +.+|+.... -.+.++..+. ..++.||+++||...-|. ..|.++++++.|...
T Consensus 1 Dk~~~~~~~~~~g-------vp~~pg~~~~~~~~eea~~~--a~~iGyPVliKas~ggGG---~gm~iv~~~~eL~~~~~ 68 (211)
T PF02786_consen 1 DKIRFRKLAKKLG-------VPVPPGSTVPISSVEEALEF--AEEIGYPVLIKASAGGGG---RGMRIVHNEEELEEAFE 68 (211)
T ss_dssp SHHHHHHHHHHTT--------BBSSBESSSBSSHHHHHHH--HHHH-SSEEEEETTSSTT---TSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHCC-------CCcCCCCCCCCCCHHHHHHH--HHhcCCceEEeecccccc---cccccccchhhhhhhhh
Confidence 5666777777654 444544433 1122222222 234789999999887764 689999999888632
Q ss_pred -----------CCceeEEEeeeccceEEEEEEEcc
Q 023408 192 -----------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 192 -----------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..|+++.+|+. +..=+-|=|++|
T Consensus 69 ~~~~~s~~~fg~~~v~iek~i~-~~reiEvqvi~D 102 (211)
T PF02786_consen 69 RAQRESPAAFGDGPVLIEKFIE-GAREIEVQVIRD 102 (211)
T ss_dssp HHHHHHHHHHSTS-EEEEE--S-SEEEEEEEEEEE
T ss_pred hccccCccccccceEEEeeehh-hhhhhhhhhhhc
Confidence 57999999998 344444445544
No 78
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=75.97 E-value=25 Score=33.73 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=30.8
Q ss_pred eEeeeccccCCCCceeEEEEeccCccCCCCCceeEEEeeecc--ceEEEEEEEcceEEE
Q 023408 163 LVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHG--GVLFKVYIVGEAIKV 219 (282)
Q Consensus 163 lI~KPlvA~Gsa~SH~Maivf~~~gL~~L~~P~VlQEFINH~--gvLfKVYVIGd~v~v 219 (282)
.|.||.-+||.. .+.|. .+.+++ +++||||.-- +|. ..+|+++.+
T Consensus 141 ~ViKp~dgCgge-----~i~~~-~~~pd~---~i~qEfIeG~~lSVS---L~~GEkv~p 187 (307)
T COG1821 141 YVIKPADGCGGE-----GILFG-RDFPDI---EIAQEFIEGEHLSVS---LSVGEKVLP 187 (307)
T ss_pred EEecccccCCcc-----eeecc-CCCcch---hhHHHhcCCcceEEE---EecCCcccc
Confidence 699999999973 22222 223333 9999999744 555 678888876
No 79
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=73.53 E-value=2.5 Score=41.14 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=47.4
Q ss_pred cccCCceEEEccCCCCchHHHHhcCCc-cceEeeeccccC-CCCceeEEEEeccCccCC-----CC--------------
Q 023408 134 KVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVADG-SAKSHELSLAYDQYSLKK-----LE-------------- 192 (282)
Q Consensus 134 ~i~vP~~vvi~~d~~~~~~~l~~agL~-fPlI~KPlvA~G-sa~SH~Maivf~~~gL~~-----L~-------------- 192 (282)
.|.+|++.++. +.++..+.. ..+. ||+++||.+-.| ..++-...++.+.+.+.+ +.
T Consensus 16 GIpvp~~~~~~-~~~ea~~~~--~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~ 92 (386)
T TIGR01016 16 GIPVPRGYVAT-SVEEAEEIA--AKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQP 92 (386)
T ss_pred CCCCCCceeeC-CHHHHHHHH--HHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceeecccCCCCCE
Confidence 58899988885 222222222 2356 999999985444 334457777766544421 11
Q ss_pred -CceeEEEeeeccceEEEEEEEcce
Q 023408 193 -PPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 193 -~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
..+++|+|++|+--+| |-+++|.
T Consensus 93 ~~~vlVEe~v~~g~E~~-v~i~~d~ 116 (386)
T TIGR01016 93 VNKILIEEATDIDKEYY-LSIVIDR 116 (386)
T ss_pred eeEEEEEECccCCceEE-EEEEEcC
Confidence 1489999998864443 4444553
No 80
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=72.02 E-value=6.9 Score=38.51 Aligned_cols=141 Identities=18% Similarity=0.261 Sum_probs=84.6
Q ss_pred HHhHHHhcCcEEEEecCCCCCCC-CC-CceEEEeccCChHHH--------------------HHHHHHHHhCCCeEEeCc
Q 023408 49 LEGLARNKGILFVAIDQNRPLSD-QG-PFDIVLHKLTGKEWR--------------------QILEEYRQTHPEVTVLDP 106 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL~~-Qg-pfDvILHKltd~~~~--------------------~~lq~y~~~hP~v~VIDP 106 (282)
+.--|...|++.+.+|-=..-.- |- ....++.-+..+.+. +.|.++.+. ...||=.
T Consensus 27 vaIe~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI~td~L~elE~~--G~~VVP~ 104 (394)
T COG0027 27 VAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAIATDALVELEEE--GYTVVPN 104 (394)
T ss_pred HHHHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhhhhHHHHHHHHhC--CceEccc
Confidence 33345667999999996332111 21 223333333322221 334455443 4557777
Q ss_pred hhHHhhhcCHHHHHHHHHh-ccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEecc
Q 023408 107 PYAIQHLHNRQSMLQCVAD-MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185 (282)
Q Consensus 107 ~~ai~~L~nR~~ml~~l~~-l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~ 185 (282)
-.+.+.-+||..+-+...+ |. +.|-+|...++ -+++.+. -..+-||+++||+.. +.-|.=++|-++
T Consensus 105 ArAt~ltMnRegiRrlAAeeLg-------lpTs~Y~fa~s-~~e~~~a--~~~iGfPcvvKPvMS---SSGkGqsvv~~~ 171 (394)
T COG0027 105 ARATKLTMNREGIRRLAAEELG-------LPTSKYRFADS-LEELRAA--VEKIGFPCVVKPVMS---SSGKGQSVVRSP 171 (394)
T ss_pred hHHHHhhhcHHHHHHHHHHHhC-------CCCcccccccc-HHHHHHH--HHHcCCCeecccccc---cCCCCceeecCH
Confidence 7888889999876665433 43 33445554431 1222222 346899999999984 456777899888
Q ss_pred CccCC-----------CCCceeEEEeeecc
Q 023408 186 YSLKK-----------LEPPLVLQEFVNHG 204 (282)
Q Consensus 186 ~gL~~-----------L~~P~VlQEFINH~ 204 (282)
+.+.. -..-+++-+||+-+
T Consensus 172 e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd 201 (394)
T COG0027 172 EDVEKAWEYAQQGGRGGSGRVIVEEFVKFD 201 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEEecce
Confidence 87753 24578999999876
No 81
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=70.45 E-value=88 Score=30.14 Aligned_cols=157 Identities=18% Similarity=0.140 Sum_probs=96.7
Q ss_pred HHhHHHhcCcEEEEecCCCCCC---CC-------CCceEEEeccCChH-HHHHHHHHHHhCCCeEEeCchhHHhhhcCHH
Q 023408 49 LEGLARNKGILFVAIDQNRPLS---DQ-------GPFDIVLHKLTGKE-WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQ 117 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL~---~Q-------gpfDvILHKltd~~-~~~~lq~y~~~hP~v~VIDP~~ai~~L~nR~ 117 (282)
+..+-+..|.+..++|.+.... .+ ..+|+++-.+.+.. -...+|.|.+.+-==.|.=|..+-.--+|..
T Consensus 26 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~ 105 (317)
T COG1181 26 VLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKI 105 (317)
T ss_pred HHHHHhhcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHH
Confidence 4444455788888998887432 12 46777655554431 0123444444432123444555555555554
Q ss_pred HHHHHHHhccccCCCCcccCCceEEEccCC-CCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC------
Q 023408 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDA-SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK------ 190 (282)
Q Consensus 118 ~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~-~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~------ 190 (282)
.+-...... .+.++.++.++.+. .+..-.-...++.||+++||--. || |=.+..+.+.+.+..
T Consensus 106 ~~K~~~~~~-------g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~-gS--Svg~~~v~~~~d~~~~~e~a~ 175 (317)
T COG1181 106 VTKRLFKAE-------GLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPARE-GS--SVGRSPVNVEGDLQSALELAF 175 (317)
T ss_pred HHHHHHHHC-------CCCccceeeeecccchhHHHHHhhcccCCCEEEEcCCc-cc--eeeEEEeeeccchHHHHHHHH
Confidence 443333322 46677788886442 22222233679999999999764 33 677888888887763
Q ss_pred -CCCceeEEEeeeccceEEEEEEEcceE
Q 023408 191 -LEPPLVLQEFVNHGGVLFKVYIVGEAI 217 (282)
Q Consensus 191 -L~~P~VlQEFINH~gvLfKVYVIGd~v 217 (282)
-+...++++|++ +.=..|=++|+..
T Consensus 176 ~~d~~vl~e~~~~--~rei~v~vl~~~~ 201 (317)
T COG1181 176 KYDRDVLREQGIT--GREIEVGVLGNDY 201 (317)
T ss_pred HhCCceeeccCCC--cceEEEEecCCcc
Confidence 256899999999 8888999999866
No 82
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=66.49 E-value=6.7 Score=38.16 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=43.4
Q ss_pred cccCCceEEEccCCCCchHHHHhcCC-ccceEeeeccc-cCCCCceeEEEEeccCccCC---------C--------CC-
Q 023408 134 KVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVA-DGSAKSHELSLAYDQYSLKK---------L--------EP- 193 (282)
Q Consensus 134 ~i~vP~~vvi~~d~~~~~~~l~~agL-~fPlI~KPlvA-~Gsa~SH~Maivf~~~gL~~---------L--------~~- 193 (282)
.|.+|++.++. +.++..+.. ..+ .||+++||..- -|..+++...+..+++.+.+ + ..
T Consensus 16 gIpvp~~~~~~-~~~ea~~~a--~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~~~~~~~~g~~ 92 (388)
T PRK00696 16 GVPVPRGIVAT-TPEEAVEAA--EELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQP 92 (388)
T ss_pred CCCCCCCeeeC-CHHHHHHHH--HHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccceeeeccCCCCCE
Confidence 58889988875 222222222 236 89999999753 34566777777765544421 1 01
Q ss_pred --ceeEEEeeeccc
Q 023408 194 --PLVLQEFVNHGG 205 (282)
Q Consensus 194 --P~VlQEFINH~g 205 (282)
.+++|+|+.|+-
T Consensus 93 ~~gvlVe~~~~~~~ 106 (388)
T PRK00696 93 VNKVLVEEGADIAK 106 (388)
T ss_pred EeEEEEEeccCCCc
Confidence 289999998863
No 83
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=49.92 E-value=61 Score=30.49 Aligned_cols=96 Identities=15% Similarity=0.196 Sum_probs=50.1
Q ss_pred CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC---CCchHHHHhcCCccceEeeeccccCCCCceeEEE
Q 023408 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA---SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (282)
Q Consensus 105 DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~---~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Mai 181 (282)
+|.+....+-|...+.+.+.+..+..+..-+.+++.+...... +++.+.+ ......++++||....|. +...+
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~viKP~~G~~G---~Gi~~ 91 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFL-RKHAPDRFVIKPANGSGG---KGILV 91 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHH-HhccCCcEEEEeCCCCCc---cCEEE
Confidence 5567777777888888877765332222112233333221111 1222222 333458999999765554 44444
Q ss_pred EeccCc------cC-------CCC-CceeEEEeeecc
Q 023408 182 AYDQYS------LK-------KLE-PPLVLQEFVNHG 204 (282)
Q Consensus 182 vf~~~g------L~-------~L~-~P~VlQEFINH~ 204 (282)
+...+| +. .+. .-.++||+|.=.
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh 128 (285)
T PF14397_consen 92 IDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQH 128 (285)
T ss_pred EEeecCcccccchhHHHHHHHhcCCccEEEEecccCC
Confidence 444332 11 111 279999998644
No 84
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=45.08 E-value=78 Score=31.07 Aligned_cols=96 Identities=17% Similarity=0.260 Sum_probs=53.8
Q ss_pred HHHHHhhHhhh---ccCCccccCCCcEEEEEEechhhhhccchhHHH-hHHHhcCcEEEEecCCCC----CCCCCCceEE
Q 023408 7 EIEEQTREEEL---LSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLE-GLARNKGILFVAIDQNRP----LSDQGPFDIV 78 (282)
Q Consensus 7 ~~~~~~~~~~~---~~~~~~~~~~~~~~VGy~l~~KK~~sf~~~~l~-~~~~~~Gi~fV~ID~~~p----L~~QgpfDvI 78 (282)
++-.|.+-+|+ .|.|..+..+. -++-++=+..-++.+.. +.. .-.+..|=.++.+|=+.. +..+-.|.
T Consensus 92 ~~~~~~E~aela~~lS~p~e~e~s~-pii~fed~~~~~~~m~n-~~~~n~~~~s~qk~~~~dGs~g~kYyIPpkSsF~-- 167 (366)
T KOG2356|consen 92 NNLKSREAAELALNLSIPSESESSE-PIIEFEDSESLSNLMSN-GMINNWVRCSGQKPGIIDGSDGTKYYIPPKSSFH-- 167 (366)
T ss_pred hhhhHHHhhHHHHhcCCcccccccc-cceeehhhcchHHHHHh-HhhhhhhcccccceeEeeCCCcceEEeCCcccee--
Confidence 44556666776 77786664432 23333333333333221 111 223445666777776443 22233332
Q ss_pred EeccCChHHHHHHHHHHHhCCCeEEeCchhH
Q 023408 79 LHKLTGKEWRQILEEYRQTHPEVTVLDPPYA 109 (282)
Q Consensus 79 LHKltd~~~~~~lq~y~~~hP~v~VIDP~~a 109 (282)
+.|..-.+++-++.+..|+++|||||=-
T Consensus 168 ---~gDv~~~~qll~~H~llpdlIIiDPPW~ 195 (366)
T KOG2356|consen 168 ---VGDVKDIEQLLRAHDLLPDLIIIDPPWF 195 (366)
T ss_pred ---cccHHHHHHHhHHHhhcCCeEEeCCCCC
Confidence 2355667777799999999999999943
No 85
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=43.97 E-value=36 Score=33.88 Aligned_cols=63 Identities=21% Similarity=0.432 Sum_probs=38.0
Q ss_pred chhhhhccchhHHHhHHHhcCcEEEEecCCCCCCCCC--CceEEEeccCCh---HHHHHHHHHHHhCCCeEE
Q 023408 37 TSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG--PFDIVLHKLTGK---EWRQILEEYRQTHPEVTV 103 (282)
Q Consensus 37 ~~KK~~sf~~~~l~~~~~~~Gi~fV~ID~~~pL~~Qg--pfDvILHKltd~---~~~~~lq~y~~~hP~v~V 103 (282)
+-...+.++...+..+.++.||+++++|++..+.+-+ ..+ ..... ..-+.+++-.++||+|++
T Consensus 163 ~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~----~~~~~~~~~~y~l~~~L~~~~P~v~i 230 (394)
T PF02065_consen 163 SNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLP----EGYHRYVLGLYRLLDRLRARFPDVLI 230 (394)
T ss_dssp TSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-----GHHHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCch----HHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 3334566666677778899999999999999887643 112 11111 122456777889999875
No 86
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=43.33 E-value=15 Score=33.92 Aligned_cols=74 Identities=15% Similarity=0.307 Sum_probs=30.3
Q ss_pred cCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC----CCCceeEEEeeec-----c-c
Q 023408 136 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK----LEPPLVLQEFVNH-----G-G 205 (282)
Q Consensus 136 ~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~----L~~P~VlQEFINH-----~-g 205 (282)
..|+...+..+..++.... ..+-.--||+||-..++ ...+.|+-+.+.+.+ ...+.|+|+||.- | -
T Consensus 42 ~~p~t~~l~~~~~~~~~~~-~~~~~~~wI~KP~~~~r---G~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grK 117 (292)
T PF03133_consen 42 FYPETFILPQDYKEFLKYF-EKNPKNLWIVKPSNGSR---GRGIKLFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRK 117 (292)
T ss_dssp -------HHHHHHHHHHHH-HTTS---EEEEES----------EEEES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-
T ss_pred CCcceEecHHHHHHHHHHH-hcCCCCEEEEeccccCC---CCCceecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeee
Confidence 4566666643322222222 22223569999987544 456777766666664 4579999999974 3 3
Q ss_pred eEEEEEEE
Q 023408 206 VLFKVYIV 213 (282)
Q Consensus 206 vLfKVYVI 213 (282)
.-+.+||+
T Consensus 118 FDlR~yvl 125 (292)
T PF03133_consen 118 FDLRVYVL 125 (292)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 34556665
No 87
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=35.87 E-value=71 Score=28.56 Aligned_cols=80 Identities=13% Similarity=0.075 Sum_probs=38.6
Q ss_pred CcEEEEEEechhhhhccchhHHHhHHHhcCcEEEEecCCCCCC--CCCCceEEEec-cCChHHHHHHHHH-HHhCCCeEE
Q 023408 28 KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLS--DQGPFDIVLHK-LTGKEWRQILEEY-RQTHPEVTV 103 (282)
Q Consensus 28 ~~~~VGy~l~~KK~~sf~~~~l~~~~~~~Gi~fV~ID~~~pL~--~QgpfDvILHK-ltd~~~~~~lq~y-~~~hP~v~V 103 (282)
+...|-|+-.|-....+ ++.+..+....|.. +++-..... ...++.+.--+ .....+.+.+.++ ....|+++|
T Consensus 40 ~~~~Vlyi~~Ed~~~~i-~~Rl~~i~~~~~~~--~~~~rl~~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvv 116 (239)
T cd01125 40 EPGRVVYLSAEDPREEI-HRRLEAILQHLEPD--DAGDRLFIDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVV 116 (239)
T ss_pred CCceEEEEECCCCHHHH-HHHHHHHHhhcCCc--CcccceEEeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEE
Confidence 46678888877655543 34555555544321 000000000 01122211100 1122344444444 356899999
Q ss_pred eCchhHH
Q 023408 104 LDPPYAI 110 (282)
Q Consensus 104 IDP~~ai 110 (282)
|||+.++
T Consensus 117 iDpl~~~ 123 (239)
T cd01125 117 IDPLVSF 123 (239)
T ss_pred ECChHHh
Confidence 9999876
No 88
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=34.46 E-value=39 Score=28.53 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHh--CCCeEEeCchhHHhhh
Q 023408 86 EWRQILEEYRQT--HPEVTVLDPPYAIQHL 113 (282)
Q Consensus 86 ~~~~~lq~y~~~--hP~v~VIDP~~ai~~L 113 (282)
...+.+.++.++ .|+++||||+.++..-
T Consensus 127 ~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 127 EDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred HHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 345677787776 4899999999999885
No 89
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=33.37 E-value=1.6e+02 Score=23.70 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=46.3
Q ss_pred ccchhHHHhHHHhcCcEEE--EecCCCCCCCCCCceEEEeccCChHHHHHHHHHHHh-CCCeEEeCchhHHhhhcCHHHH
Q 023408 43 SFLQPKLEGLARNKGILFV--AIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQT-HPEVTVLDPPYAIQHLHNRQSM 119 (282)
Q Consensus 43 sf~~~~l~~~~~~~Gi~fV--~ID~~~pL~~QgpfDvILHKltd~~~~~~lq~y~~~-hP~v~VIDP~~ai~~L~nR~~m 119 (282)
++.-.++.++|+++|+++- ......--+....+|+||-=-.-.-....+++..+. +-.|.+|||-+-..-.+|=...
T Consensus 14 s~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg~~~~dg~~v 93 (99)
T cd05565 14 GLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYIELTRDPDGA 93 (99)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHhHHhCCHHHH
Confidence 3445567778999999752 222221101234789998532222234455555444 4689999998877667776655
Q ss_pred HH
Q 023408 120 LQ 121 (282)
Q Consensus 120 l~ 121 (282)
++
T Consensus 94 l~ 95 (99)
T cd05565 94 LK 95 (99)
T ss_pred HH
Confidence 55
No 90
>PF14972 Mito_morph_reg: Mitochondrial morphogenesis regulator
Probab=33.05 E-value=63 Score=28.73 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=27.9
Q ss_pred EEEeccCCh-----HHHHHHHHHHHhCCCeEEeCchh
Q 023408 77 IVLHKLTGK-----EWRQILEEYRQTHPEVTVLDPPY 108 (282)
Q Consensus 77 vILHKltd~-----~~~~~lq~y~~~hP~v~VIDP~~ 108 (282)
+|||-++|- .+..+|++..++..+++||+|..
T Consensus 5 ~vI~evYd~ena~e~FE~eLe~ALe~~~~~IVIEP~~ 41 (165)
T PF14972_consen 5 AVIREVYDGENAHEQFEAELERALEAKVSYIVIEPTR 41 (165)
T ss_pred EEEehHhcCcchHHHHHHHHHHHHHhCCCEEEECCcc
Confidence 689999984 46788999999999999999973
No 91
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=30.70 E-value=1e+02 Score=24.95 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=28.5
Q ss_pred HHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCCh-HHHHHHHHHHHh
Q 023408 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGK-EWRQILEEYRQT 97 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd~-~~~~~lq~y~~~ 97 (282)
.|.+|.+..||+. .|.. +++|.|++.||.=.+. ...+++++|.+.
T Consensus 15 aF~DYl~sqgI~~-~i~~----~~~~~~~lwl~de~~~~~a~~el~~Fl~n 60 (101)
T PF12122_consen 15 AFIDYLASQGIEL-QIEP----EGQGQFALWLHDEEHLEQAEQELEEFLQN 60 (101)
T ss_dssp HHHHHHHHTT--E-EEE-----SSSE--EEEES-GGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCeE-EEEE----CCCCceEEEEeCHHHHHHHHHHHHHHHHC
Confidence 5889999999887 3333 5677899999944443 467788888754
No 92
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=28.81 E-value=1.2e+02 Score=26.86 Aligned_cols=40 Identities=10% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHh-CCCeEEeCchhHHhhhcCHHHHHHHHHh
Q 023408 86 EWRQILEEYRQT-HPEVTVLDPPYAIQHLHNRQSMLQCVAD 125 (282)
Q Consensus 86 ~~~~~lq~y~~~-hP~v~VIDP~~ai~~L~nR~~ml~~l~~ 125 (282)
.....+.+.+++ .|+++|||++.+.....++..+.+.+..
T Consensus 107 ~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~ 147 (234)
T PRK06067 107 KLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTE 147 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHH
Confidence 344555556554 8899999999988776776655555443
No 93
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=28.02 E-value=1.9e+02 Score=23.35 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=38.7
Q ss_pred EEEEEEechhhhhccchhHHHhHHHhcCcEEEEecCCC----------CCCCC-CCceEEEeccCChHHHHHHHHHHHhC
Q 023408 30 VVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNR----------PLSDQ-GPFDIVLHKLTGKEWRQILEEYRQTH 98 (282)
Q Consensus 30 ~~VGy~l~~KK~~sf~~~~l~~~~~~~Gi~fV~ID~~~----------pL~~Q-gpfDvILHKltd~~~~~~lq~y~~~h 98 (282)
.+||.--.+.|.-.... ....++|++.++++++. .|.+. ++.|+++-=+.-..+.+.+++-.+..
T Consensus 4 AVvGaS~~~~~~g~~v~----~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g 79 (116)
T PF13380_consen 4 AVVGASDNPGKFGYRVL----RNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALG 79 (116)
T ss_dssp EEET--SSTTSHHHHHH----HHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT
T ss_pred EEEcccCCCCChHHHHH----HHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcC
Confidence 45665554444433332 23344999999999976 23332 56776666666556666666666666
Q ss_pred CCeEEeCch
Q 023408 99 PEVTVLDPP 107 (282)
Q Consensus 99 P~v~VIDP~ 107 (282)
...+++=|=
T Consensus 80 ~~~v~~~~g 88 (116)
T PF13380_consen 80 VKAVWLQPG 88 (116)
T ss_dssp -SEEEE-TT
T ss_pred CCEEEEEcc
Confidence 655555444
No 94
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.84 E-value=25 Score=36.27 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=39.9
Q ss_pred ccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCCCCceeEEEee-------eccceE
Q 023408 135 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFV-------NHGGVL 207 (282)
Q Consensus 135 i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L~~P~VlQEFI-------NH~gvL 207 (282)
-+=|+.|.+..+-.++.+.... .+=|+||||.-.+ .+-..+++-+..-....+ -.++|||| ||=-..
T Consensus 203 ~fyp~sw~lPa~l~df~a~~~~--~KrtfivkpDsga---qg~giylisDir~~g~~Q-~~~vQeyV~~pLli~dkyKfd 276 (565)
T KOG2158|consen 203 MFYPTSWRLPAPLCDFPASTEI--MKRTFIVKPDSGA---QGSGIYLISDIREKGEYQ-NKKVQEYVTYPLLISDKYKFD 276 (565)
T ss_pred cCCCccccCchHHHHHHHHHHH--hcccEEECCCCCC---CCcceeeechhhhhhHHH-HHHHHHHhcccccccccceee
Confidence 3447777664332334433222 2339999996543 344566663322222222 27888887 555666
Q ss_pred EEEEEE
Q 023408 208 FKVYIV 213 (282)
Q Consensus 208 fKVYVI 213 (282)
+.||++
T Consensus 277 ~rvy~l 282 (565)
T KOG2158|consen 277 QRVYSL 282 (565)
T ss_pred eeeeee
Confidence 777776
No 95
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=27.79 E-value=2e+02 Score=26.24 Aligned_cols=69 Identities=10% Similarity=0.136 Sum_probs=39.7
Q ss_pred EEEEechhh----hhccchhHHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccCChHHHHHHHHHHHhC
Q 023408 32 VGYALTSKK----TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTGKEWRQILEEYRQTH 98 (282)
Q Consensus 32 VGy~l~~KK----~~sf~~~~l~~~~~~~Gi~fV~ID~~~pL~~Q---------gpfDvILHKltd~~~~~~lq~y~~~h 98 (282)
||+.++-.. ++...+.++...+++.|+++..++...+.+++ ..+|+|+= +...+...+.+..++|
T Consensus 2 va~l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~--~g~~~~~~~~~vA~~~ 79 (258)
T cd06353 2 VAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENVPEGADAERVLRELAAQGYDLIFG--TSFGFMDAALKVAKEY 79 (258)
T ss_pred EEEEEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecCCchHhHHHHHHHHHHcCCCEEEE--CchhhhHHHHHHHHHC
Confidence 566665333 23334456677777789998777655322211 23666664 4555666666666677
Q ss_pred CCeE
Q 023408 99 PEVT 102 (282)
Q Consensus 99 P~v~ 102 (282)
|++.
T Consensus 80 p~~~ 83 (258)
T cd06353 80 PDVK 83 (258)
T ss_pred CCCE
Confidence 7554
No 96
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=27.34 E-value=77 Score=32.26 Aligned_cols=150 Identities=21% Similarity=0.340 Sum_probs=85.2
Q ss_pred HHHhHHHhcCcEEEEecCCC-CCCC-----CC-CceEEEeccCChHH-------HHHHHHHHHhCCCeEEeCchhHHhhh
Q 023408 48 KLEGLARNKGILFVAIDQNR-PLSD-----QG-PFDIVLHKLTGKEW-------RQILEEYRQTHPEVTVLDPPYAIQHL 113 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~-pL~~-----Qg-pfDvILHKltd~~~-------~~~lq~y~~~hP~v~VIDP~~ai~~L 113 (282)
.|..+-+++|+..+-.|+.. .+.+ +| |+|+|.-.+-..+. ..-++.|.. ..|+++-|+ +.+.+
T Consensus 204 ~f~~~f~~~G~~~vI~d~~~L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~--~av~~vgsf-rs~l~ 280 (445)
T PF14403_consen 204 VFQRLFEEHGYDCVICDPRDLEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRD--GAVCMVGSF-RSQLL 280 (445)
T ss_pred HHHHHHHHcCCceEecChHHceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhc--CCeEEecch-hhhhh
Confidence 37778889999999999854 2211 23 78887766654332 234566643 479999998 66788
Q ss_pred cCHHHHHHHHHh-cc---ccC---CCCcccCCceEEEcc-------CCCCchHHHHhcCCccceEeeeccccCCCCceeE
Q 023408 114 HNRQSMLQCVAD-MN---LSN---SYGKVDVPRQLVIER-------DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 179 (282)
Q Consensus 114 ~nR~~ml~~l~~-l~---~~~---~~~~i~vP~~vvi~~-------d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~M 179 (282)
+|+..+ ..|.+ .. ++. ....=.+|--..++. ...++.+..... +==+|.||.-..|+ |..
T Consensus 281 hnK~iF-aiL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~--r~~lVLKP~D~Ygg---~GV 354 (445)
T PF14403_consen 281 HNKIIF-AILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIAN--RDRLVLKPNDEYGG---KGV 354 (445)
T ss_pred hhhHHH-HHhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHhc--hhcEEeccccccCC---CCe
Confidence 887533 22221 11 000 001123566666653 122333333222 34589999988875 433
Q ss_pred EEE--ec----cCccCC-CCCceeEEEeeeccce
Q 023408 180 SLA--YD----QYSLKK-LEPPLVLQEFVNHGGV 206 (282)
Q Consensus 180 aiv--f~----~~gL~~-L~~P~VlQEFINH~gv 206 (282)
.+= ++ ++.|.. +..|.|+|||+-=.-.
T Consensus 355 ~~G~e~~~eeW~~~l~~a~~~~yilQe~v~~~~~ 388 (445)
T PF14403_consen 355 YIGWETSPEEWEAALEEAAREPYILQEYVRPPRE 388 (445)
T ss_pred EECCcCCHHHHHHHHHHHhcCCcEEEEEecCCcc
Confidence 332 11 223332 4669999999875433
No 97
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=25.96 E-value=2.5e+02 Score=25.44 Aligned_cols=90 Identities=13% Similarity=0.175 Sum_probs=46.9
Q ss_pred hhccCCccc----cCCCcEEEEEEechhhhhcc---chhHHHhHHHhcCcEEEEecCCCCCCC---------CCCceEEE
Q 023408 16 ELLSFPQTQ----QQSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVL 79 (282)
Q Consensus 16 ~~~~~~~~~----~~~~~~~VGy~l~~KK~~sf---~~~~l~~~~~~~Gi~fV~ID~~~pL~~---------QgpfDvIL 79 (282)
|++--|+.. ...+..+||+.++.-. ..| +..++...|+++|+.++-.+.....+. ++.+|.||
T Consensus 44 elgY~pn~~a~~l~~~~~~~Igvv~~~~~-~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI 122 (328)
T PRK11303 44 EHNYHPNAVAAGLRAGRTRSIGLIIPDLE-NTSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALI 122 (328)
T ss_pred HhCCCCCHHHHHhhcCCCceEEEEeCCCC-CchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 334445543 3445689999986421 222 122455678889999876654332221 24688665
Q ss_pred eccCChHHHHHHHHHHHhCCCeEEeCc
Q 023408 80 HKLTGKEWRQILEEYRQTHPEVTVLDP 106 (282)
Q Consensus 80 HKltd~~~~~~lq~y~~~hP~v~VIDP 106 (282)
---........++++.+..=.++++|.
T Consensus 123 i~~~~~~~~~~~~~l~~~~iPvV~v~~ 149 (328)
T PRK11303 123 VSTSLPPEHPFYQRLQNDGLPIIALDR 149 (328)
T ss_pred EcCCCCCChHHHHHHHhcCCCEEEECC
Confidence 421111112234444444446777875
No 98
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=25.15 E-value=2.9e+02 Score=25.23 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=41.8
Q ss_pred CCCcEEEEEEechhh--hhccchhHHHhHHHhcCcEEEEecCCCCCCC---------CCCceEEEeccCChHHHHHHHHH
Q 023408 26 QSKLVVVGYALTSKK--TKSFLQPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVLHKLTGKEWRQILEEY 94 (282)
Q Consensus 26 ~~~~~~VGy~l~~KK--~~sf~~~~l~~~~~~~Gi~fV~ID~~~pL~~---------QgpfDvILHKltd~~~~~~lq~y 94 (282)
..+..+||+.++.-- .-.-...++...|+++|+.++-.+....-+. +..+|.||-=-.+......++..
T Consensus 61 ~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l 140 (342)
T PRK10014 61 GGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMA 140 (342)
T ss_pred cCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHH
Confidence 445679999986421 1111233456788899987765443322111 23578666532222223344444
Q ss_pred HHhCCCeEEeC
Q 023408 95 RQTHPEVTVLD 105 (282)
Q Consensus 95 ~~~hP~v~VID 105 (282)
.+..-.++.+|
T Consensus 141 ~~~~iPvV~~~ 151 (342)
T PRK10014 141 EEKGIPVVFAS 151 (342)
T ss_pred hhcCCCEEEEe
Confidence 44444666666
No 99
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.70 E-value=55 Score=33.38 Aligned_cols=39 Identities=28% Similarity=0.478 Sum_probs=31.9
Q ss_pred eccCccCCCCCceeEEEeeeccceEEEEEEEcceEEEEE
Q 023408 183 YDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVR 221 (282)
Q Consensus 183 f~~~gL~~L~~P~VlQEFINH~gvLfKVYVIGd~v~vv~ 221 (282)
|.+.|+..+.||+++|.=|.-|+.|||.=--|+-....+
T Consensus 257 y~~~~ytEVtPPtmVQTQVEGGsTLFkldYyGEeAyLTQ 295 (545)
T KOG0555|consen 257 YFERGYTEVTPPTMVQTQVEGGSTLFKLDYYGEEAYLTQ 295 (545)
T ss_pred HHhcCceecCCCceEEEEecCcceEEeecccCchhhccc
Confidence 556777788999999999999999999877776655443
No 100
>PF06228 ChuX_HutX: Haem utilisation ChuX/HutX; InterPro: IPR010413 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2OVI_A 2PH0_B 3FM2_B 2HQV_A.
Probab=24.65 E-value=64 Score=27.74 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=13.0
Q ss_pred EEEeeecc-ceEEEEEEEc
Q 023408 197 LQEFVNHG-GVLFKVYIVG 214 (282)
Q Consensus 197 lQEFINH~-gvLfKVYVIG 214 (282)
-=.|+|++ ..+||||+=-
T Consensus 105 sv~F~~~~G~~~fKvflgR 123 (141)
T PF06228_consen 105 SVQFFDADGEAMFKVFLGR 123 (141)
T ss_dssp EEEEEETTSSEEEEEEE-B
T ss_pred EEEEECCCCCEEEEEEeec
Confidence 34577776 8999999853
No 101
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=24.63 E-value=1.2e+02 Score=27.24 Aligned_cols=28 Identities=7% Similarity=-0.025 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhC-CCeEEeCchhHHhhh
Q 023408 86 EWRQILEEYRQTH-PEVTVLDPPYAIQHL 113 (282)
Q Consensus 86 ~~~~~lq~y~~~h-P~v~VIDP~~ai~~L 113 (282)
...+.++++...+ |+++|||++..+...
T Consensus 127 ~i~~~i~~~~~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 127 SVLEKVRYMAVSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HHHHHHHHHHhcCCceEEEECCHHHHhcc
Confidence 3456666666554 899999999998765
No 102
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=24.24 E-value=1.3e+02 Score=25.90 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=23.2
Q ss_pred EEEeccCCh----HHHHHHHHHHHh-CCCeEEeCchhHHhh
Q 023408 77 IVLHKLTGK----EWRQILEEYRQT-HPEVTVLDPPYAIQH 112 (282)
Q Consensus 77 vILHKltd~----~~~~~lq~y~~~-hP~v~VIDP~~ai~~ 112 (282)
+++.+..+. .+...+.++..+ .|+++|||++.++..
T Consensus 71 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 71 FIVFEVFDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 445555442 234555555555 589999999998753
No 103
>PRK04266 fibrillarin; Provisional
Probab=22.65 E-value=3.2e+02 Score=24.79 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=50.6
Q ss_pred HhhhccCCccc----cC--CCcEEEEEEechhhhhccchhHHHhHHHh-cCcEEEEecCCCCCCC---CCCceEEEeccC
Q 023408 14 EEELLSFPQTQ----QQ--SKLVVVGYALTSKKTKSFLQPKLEGLARN-KGILFVAIDQNRPLSD---QGPFDIVLHKLT 83 (282)
Q Consensus 14 ~~~~~~~~~~~----~~--~~~~~VGy~l~~KK~~sf~~~~l~~~~~~-~Gi~fV~ID~~~pL~~---QgpfDvILHKlt 83 (282)
=.|++.+++.. +. ....++|+=.++...+.+.. .|++ .++.++.-|...|... ..+||+|+|-+.
T Consensus 76 VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~-----~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~ 150 (226)
T PRK04266 76 VLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLE-----VAEERKNIIPILADARKPERYAHVVEKVDVIYQDVA 150 (226)
T ss_pred EEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHH-----HhhhcCCcEEEECCCCCcchhhhccccCCEEEECCC
Confidence 35666666542 11 13578999888876664432 3333 4788887788754211 246999999877
Q ss_pred ChH----HHHHHHHHHHhCCCeEE
Q 023408 84 GKE----WRQILEEYRQTHPEVTV 103 (282)
Q Consensus 84 d~~----~~~~lq~y~~~hP~v~V 103 (282)
+.. ..+++.++.+..-.++|
T Consensus 151 ~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 151 QPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred ChhHHHHHHHHHHHhcCCCcEEEE
Confidence 532 23445555555555555
No 104
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=22.44 E-value=2.5e+02 Score=21.73 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=14.3
Q ss_pred HHhHHHhcCcEEEEecCCCC
Q 023408 49 LEGLARNKGILFVAIDQNRP 68 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~p 68 (282)
+..+.++.|++.+.++.+.|
T Consensus 19 ~~~~l~~~G~~v~~l~~~~~ 38 (125)
T cd02065 19 VAIALRDNGFEVIDLGVDVP 38 (125)
T ss_pred HHHHHHHCCCEEEEcCCCCC
Confidence 44567888998888866543
No 105
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=22.14 E-value=6.1e+02 Score=23.19 Aligned_cols=100 Identities=19% Similarity=0.229 Sum_probs=59.3
Q ss_pred hhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCcc--
Q 023408 111 QHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSL-- 188 (282)
Q Consensus 111 ~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL-- 188 (282)
..+.|+...-+-+++.. +....+|-..+.+ +. +.+.-..|.-++|.||--+||+ ..|+.+...+
T Consensus 16 ~~~~DK~~VR~yv~~~~----g~~~l~pll~v~~-~~----~~i~~~~Lp~~fViK~nhgsg~-----~~i~~dk~~~d~ 81 (239)
T PF14305_consen 16 TKLADKYAVREYVEEKI----GEEYLPPLLGVYD-NP----DDIDFDSLPDKFVIKPNHGSGS-----NIIVRDKSKLDI 81 (239)
T ss_pred eecchHHHHHHHHHHhC----CCceECceeecCC-Ch----hhhhhhcCCCCEEEEEecCCCc-----EEEEeCCcccCH
Confidence 34455555444444421 1235556665553 22 2233456778999999988884 2333332222
Q ss_pred ------------------------CCCCCceeEEEeeeccc----eEEEEEEEcceEEEEEecC
Q 023408 189 ------------------------KKLEPPLVLQEFVNHGG----VLFKVYIVGEAIKVVRRFS 224 (282)
Q Consensus 189 ------------------------~~L~~P~VlQEFINH~g----vLfKVYVIGd~v~vv~R~S 224 (282)
..+++-+++-+|+...+ .=||+||...++.+...-+
T Consensus 82 ~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~ 145 (239)
T PF14305_consen 82 EEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDS 145 (239)
T ss_pred HHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEe
Confidence 23456789999998873 4699999999665554433
No 106
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.63 E-value=2.2e+02 Score=24.65 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=36.3
Q ss_pred EEEEechhhhh--ccchhHHHhHHHhcCcEEEEe-cCCCCCCCCCCceEEEeccCChHHHHHHHHHHHhCCCeEEeCchh
Q 023408 32 VGYALTSKKTK--SFLQPKLEGLARNKGILFVAI-DQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPY 108 (282)
Q Consensus 32 VGy~l~~KK~~--sf~~~~l~~~~~~~Gi~fV~I-D~~~pL~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~ 108 (282)
||+.++...-. .-.+.++...|++.|+.+.-+ |-... .....+.+++.++++|+.+|+-|.+
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~d---------------~~~q~~~i~~~i~~~~d~Iiv~~~~ 65 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIVFDAQND---------------PEEQIEQIEQAISQGVDGIIVSPVD 65 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEEEESTTT---------------HHHHHHHHHHHHHTTESEEEEESSS
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCC---------------HHHHHHHHHHHHHhcCCEEEecCCC
Confidence 45555554433 223446778899999998776 33222 2344555666666666666665554
Q ss_pred H
Q 023408 109 A 109 (282)
Q Consensus 109 a 109 (282)
.
T Consensus 66 ~ 66 (257)
T PF13407_consen 66 P 66 (257)
T ss_dssp T
T ss_pred H
Confidence 3
No 107
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=20.85 E-value=1.3e+02 Score=26.70 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=19.6
Q ss_pred CcEEEEecCCCCCCCCCCceEEEe
Q 023408 57 GILFVAIDQNRPLSDQGPFDIVLH 80 (282)
Q Consensus 57 Gi~fV~ID~~~pL~~QgpfDvILH 80 (282)
++.++.-|....+.+.++||+|+=
T Consensus 128 ~v~~~~gd~~~~~~~~~~fD~I~~ 151 (212)
T PRK13942 128 NVEVIVGDGTLGYEENAPYDRIYV 151 (212)
T ss_pred CeEEEECCcccCCCcCCCcCEEEE
Confidence 588899998777777789999873
No 108
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=20.85 E-value=4.2e+02 Score=23.98 Aligned_cols=90 Identities=12% Similarity=0.094 Sum_probs=48.4
Q ss_pred hhccCCccc----cCCCcEEEEEEechhhhhccc---hhHHHhHHHhcCcEEEEecCCCCCC---------CCCCceEEE
Q 023408 16 ELLSFPQTQ----QQSKLVVVGYALTSKKTKSFL---QPKLEGLARNKGILFVAIDQNRPLS---------DQGPFDIVL 79 (282)
Q Consensus 16 ~~~~~~~~~----~~~~~~~VGy~l~~KK~~sf~---~~~l~~~~~~~Gi~fV~ID~~~pL~---------~QgpfDvIL 79 (282)
|++--|+.. ...+..+||..++.-. ..|. ..++...++++|+.++-.+.+..-. .+..+|-||
T Consensus 43 ~lgY~pn~~a~~l~~~~~~~Igvi~~~~~-~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiI 121 (327)
T TIGR02417 43 EQGYQPNIHAASLRAGRSRTIGLVIPDLE-NYSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALI 121 (327)
T ss_pred HhCCCCCHHHHHhhcCCCceEEEEeCCCC-CccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 344445543 3345689999987422 1221 2345568888999987665543211 124688555
Q ss_pred eccCChHHHHHHHHHHHhCCCeEEeCc
Q 023408 80 HKLTGKEWRQILEEYRQTHPEVTVLDP 106 (282)
Q Consensus 80 HKltd~~~~~~lq~y~~~hP~v~VIDP 106 (282)
==-++......++...+..-.++++|.
T Consensus 122 i~~~~~~~~~~~~~l~~~~iPvV~~~~ 148 (327)
T TIGR02417 122 VASCMPPEDAYYQKLQNEGLPVVALDR 148 (327)
T ss_pred EeCCCCCChHHHHHHHhcCCCEEEEcc
Confidence 322221122334444445557888885
No 109
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=20.75 E-value=80 Score=28.49 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=20.2
Q ss_pred CcEEEEecCCCCCCCCCCceEEEecc
Q 023408 57 GILFVAIDQNRPLSDQGPFDIVLHKL 82 (282)
Q Consensus 57 Gi~fV~ID~~~pL~~QgpfDvILHKl 82 (282)
++.++.-|-...+++++|||.|+==.
T Consensus 124 nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 124 NVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp SEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred ceeEEEcchhhccccCCCcCEEEEee
Confidence 78999999998888999999887533
No 110
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=20.00 E-value=1e+02 Score=24.80 Aligned_cols=19 Identities=37% Similarity=0.723 Sum_probs=16.2
Q ss_pred Eeeecc--ceEEEEEEEcceE
Q 023408 199 EFVNHG--GVLFKVYIVGEAI 217 (282)
Q Consensus 199 EFINH~--gvLfKVYVIGd~v 217 (282)
.|+||- |-||.|..+||.=
T Consensus 4 ~YLNHPtFGlLy~Vc~~~e~~ 24 (88)
T PF12058_consen 4 TYLNHPTFGLLYRVCPVDEGQ 24 (88)
T ss_dssp -EEEETTTEEEEEEEEECTTE
T ss_pred ccccCCccchheeeeeCCCcc
Confidence 599998 9999999999753
Done!