Query 023408
Match_columns 282
No_of_seqs 133 out of 156
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 06:17:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 1.2E-46 4.2E-51 355.9 23.9 248 25-275 14-278 (346)
2 1z2n_X Inositol 1,3,4-trisphos 99.9 2.4E-23 8.2E-28 189.4 16.8 197 24-232 6-207 (324)
3 1uc8_A LYSX, lysine biosynthes 99.0 7.1E-10 2.4E-14 97.2 10.0 159 48-220 15-191 (280)
4 3t7a_A Inositol pyrophosphate 99.0 2.7E-09 9.1E-14 100.6 12.4 187 26-224 4-228 (330)
5 1iow_A DD-ligase, DDLB, D-ALA\ 98.8 3.1E-08 1E-12 88.2 12.8 151 48-218 25-198 (306)
6 3r5x_A D-alanine--D-alanine li 98.8 6.6E-09 2.3E-13 93.4 8.5 154 49-217 27-192 (307)
7 4eg0_A D-alanine--D-alanine li 98.7 3.4E-07 1.2E-11 83.3 15.6 156 49-217 37-206 (317)
8 3se7_A VANA; alpha-beta struct 98.7 4.2E-08 1.4E-12 90.8 9.1 149 49-215 27-222 (346)
9 1i7n_A Synapsin II; synapse, p 98.6 1.4E-07 4.9E-12 88.1 10.7 136 74-225 68-220 (309)
10 2p0a_A Synapsin-3, synapsin II 98.6 2.6E-07 9E-12 87.6 10.7 136 74-225 85-237 (344)
11 1pk8_A RAT synapsin I; ATP bin 98.5 6.3E-07 2.1E-11 87.3 10.5 136 74-225 180-332 (422)
12 1gsa_A Glutathione synthetase; 98.3 1.4E-06 4.7E-11 77.3 8.3 157 48-223 23-226 (316)
13 3q2o_A Phosphoribosylaminoimid 98.3 8.7E-06 3E-10 76.1 13.7 155 46-215 26-204 (389)
14 2i87_A D-alanine-D-alanine lig 98.2 3.4E-06 1.2E-10 78.3 8.7 126 73-216 86-229 (364)
15 3ax6_A Phosphoribosylaminoimid 98.1 4E-05 1.4E-09 71.0 13.8 148 48-215 15-185 (380)
16 1ehi_A LMDDL2, D-alanine:D-lac 98.1 2.1E-05 7.2E-10 73.8 11.7 130 74-216 93-233 (377)
17 3k5i_A Phosphoribosyl-aminoimi 98.1 3.5E-05 1.2E-09 73.0 12.7 156 45-215 35-217 (403)
18 3orq_A N5-carboxyaminoimidazol 98.0 9E-05 3.1E-09 69.4 14.8 150 48-213 26-200 (377)
19 3ln6_A Glutathione biosynthesi 98.0 1E-05 3.6E-10 83.5 9.1 149 48-228 432-593 (750)
20 3vot_A L-amino acid ligase, BL 98.0 0.00028 9.6E-09 66.4 17.1 155 49-218 20-218 (425)
21 3aw8_A PURK, phosphoribosylami 98.0 3.7E-05 1.3E-09 71.0 10.7 149 49-215 14-188 (369)
22 2z04_A Phosphoribosylaminoimid 97.9 2.6E-05 9E-10 71.7 9.0 147 48-215 15-184 (365)
23 1e4e_A Vancomycin/teicoplanin 97.9 3.8E-05 1.3E-09 70.6 10.0 100 100-216 116-223 (343)
24 2pn1_A Carbamoylphosphate synt 97.9 7.3E-05 2.5E-09 67.4 11.2 101 100-215 98-202 (331)
25 4ffl_A PYLC; amino acid, biosy 97.9 0.00028 9.6E-09 64.9 14.8 140 48-216 15-176 (363)
26 3k3p_A D-alanine--D-alanine li 97.9 6.6E-05 2.3E-09 71.3 10.6 174 30-216 38-259 (383)
27 3i12_A D-alanine-D-alanine lig 97.8 7.3E-05 2.5E-09 69.8 9.9 126 74-216 98-237 (364)
28 3e5n_A D-alanine-D-alanine lig 97.8 0.00015 5E-09 68.7 12.1 128 74-216 117-256 (386)
29 3lwb_A D-alanine--D-alanine li 97.8 4.6E-05 1.6E-09 71.8 8.6 126 74-216 109-246 (373)
30 1kjq_A GART 2, phosphoribosylg 97.8 9.8E-05 3.4E-09 68.3 10.6 152 47-215 24-210 (391)
31 4e4t_A Phosphoribosylaminoimid 97.8 0.00013 4.5E-09 69.7 11.7 153 46-214 47-227 (419)
32 2fb9_A D-alanine:D-alanine lig 97.8 0.00013 4.5E-09 66.7 11.2 123 72-216 74-209 (322)
33 3tqt_A D-alanine--D-alanine li 97.8 0.00011 3.8E-09 69.3 10.8 129 74-216 98-238 (372)
34 3eth_A Phosphoribosylaminoimid 97.7 0.00042 1.4E-08 65.3 13.2 147 48-214 15-168 (355)
35 3df7_A Putative ATP-grAsp supe 97.7 0.00027 9.2E-09 64.6 11.6 109 73-215 68-177 (305)
36 2dwc_A PH0318, 433AA long hypo 97.7 0.00011 3.7E-09 69.4 8.9 151 47-214 32-217 (433)
37 3ln7_A Glutathione biosynthesi 97.6 0.00011 3.8E-09 76.0 8.7 154 46-228 435-599 (757)
38 3mjf_A Phosphoribosylamine--gl 97.6 0.00023 7.9E-09 68.0 10.1 110 90-215 82-205 (431)
39 2ip4_A PURD, phosphoribosylami 97.6 0.00015 5.3E-09 68.0 8.3 101 100-215 85-195 (417)
40 2xcl_A Phosphoribosylamine--gl 97.6 9.9E-05 3.4E-09 69.3 7.0 100 100-214 86-199 (422)
41 2pvp_A D-alanine-D-alanine lig 97.6 0.0006 2.1E-08 64.1 12.1 128 74-217 107-247 (367)
42 2yw2_A Phosphoribosylamine--gl 97.5 0.00013 4.5E-09 68.5 7.3 104 100-218 86-205 (424)
43 2yrx_A Phosphoribosylglycinami 97.5 0.00019 6.5E-09 68.4 7.8 99 100-213 107-219 (451)
44 4fu0_A D-alanine--D-alanine li 97.5 0.00013 4.3E-09 67.9 6.2 131 74-218 97-237 (357)
45 2qk4_A Trifunctional purine bi 97.4 0.00025 8.7E-09 67.4 7.8 100 100-214 112-226 (452)
46 4dim_A Phosphoribosylglycinami 97.4 0.00015 5E-09 67.5 5.6 140 48-203 21-193 (403)
47 3lp8_A Phosphoribosylamine-gly 97.4 0.00039 1.3E-08 66.8 8.7 109 91-215 99-221 (442)
48 3vmm_A Alanine-anticapsin liga 97.4 0.0016 5.6E-08 63.3 12.6 88 104-204 128-234 (474)
49 2r85_A PURP protein PF1517; AT 97.3 0.0017 5.8E-08 58.1 11.3 131 47-203 14-178 (334)
50 3ouz_A Biotin carboxylase; str 97.3 0.00027 9.4E-09 67.1 6.1 102 100-215 103-220 (446)
51 1a9x_A Carbamoyl phosphate syn 97.3 0.00048 1.6E-08 73.4 8.0 153 48-215 32-223 (1073)
52 1vkz_A Phosphoribosylamine--gl 97.3 0.00048 1.6E-08 65.0 7.2 99 102-215 93-204 (412)
53 1a9x_A Carbamoyl phosphate syn 97.1 0.0028 9.7E-08 67.5 12.3 102 100-215 658-769 (1073)
54 2dzd_A Pyruvate carboxylase; b 97.1 0.0017 5.8E-08 61.8 9.0 102 100-215 104-221 (461)
55 2w70_A Biotin carboxylase; lig 96.9 0.0012 4E-08 62.6 6.1 101 100-214 99-216 (449)
56 1ulz_A Pyruvate carboxylase N- 96.7 0.001 3.5E-08 63.0 3.8 102 100-215 98-215 (451)
57 2vpq_A Acetyl-COA carboxylase; 96.6 0.0026 8.9E-08 60.2 6.5 101 100-214 98-214 (451)
58 3glk_A Acetyl-COA carboxylase 96.5 0.0036 1.2E-07 62.1 6.9 105 100-215 148-288 (540)
59 2pbz_A Hypothetical protein; N 96.5 0.0026 9E-08 59.3 5.4 131 48-202 15-167 (320)
60 3jrx_A Acetyl-COA carboxylase 96.5 0.0065 2.2E-07 61.1 8.5 105 100-215 164-304 (587)
61 1w96_A ACC, acetyl-coenzyme A 96.4 0.0029 9.9E-08 62.3 5.4 104 101-215 158-294 (554)
62 3n6r_A Propionyl-COA carboxyla 96.3 0.0043 1.5E-07 63.2 6.3 108 93-215 93-216 (681)
63 2cqy_A Propionyl-COA carboxyla 96.3 7.6E-05 2.6E-09 56.6 -5.1 65 134-204 20-99 (108)
64 3u9t_A MCC alpha, methylcroton 96.2 0.0084 2.9E-07 61.0 7.8 110 100-222 125-253 (675)
65 3hbl_A Pyruvate carboxylase; T 95.7 0.018 6.2E-07 62.1 8.0 102 100-215 102-219 (1150)
66 2qf7_A Pyruvate carboxylase pr 95.3 0.029 9.9E-07 60.6 7.7 102 100-215 118-235 (1165)
67 3va7_A KLLA0E08119P; carboxyla 94.4 0.035 1.2E-06 60.4 5.3 102 100-215 128-244 (1236)
68 1wr2_A Hypothetical protein PH 93.2 0.043 1.5E-06 47.9 2.8 93 113-216 19-130 (238)
69 2r7k_A 5-formaminoimidazole-4- 92.7 0.25 8.4E-06 46.5 7.3 132 49-202 32-203 (361)
70 3ufx_B Succinyl-COA synthetase 82.8 0.68 2.3E-05 44.2 3.1 78 134-215 16-107 (397)
71 2nu8_B SCS-beta, succinyl-COA 78.5 1.9 6.5E-05 40.9 4.6 80 134-217 16-117 (388)
72 2io8_A Bifunctional glutathion 74.7 48 0.0016 33.4 13.8 157 48-224 398-600 (619)
73 2fp4_B Succinyl-COA ligase [GD 65.7 7.2 0.00025 37.1 5.3 95 134-232 16-142 (395)
74 3tig_A TTL protein; ATP-grAsp, 45.5 9 0.00031 36.5 2.1 150 49-213 20-209 (380)
75 3l6u_A ABC-type sugar transpor 43.7 41 0.0014 28.3 5.9 81 25-106 4-97 (293)
76 3gyb_A Transcriptional regulat 41.2 60 0.002 27.1 6.6 74 27-107 3-88 (280)
77 3s99_A Basic membrane lipoprot 39.1 50 0.0017 30.4 6.2 91 25-117 22-132 (356)
78 3l49_A ABC sugar (ribose) tran 35.5 83 0.0029 26.3 6.6 79 27-106 3-94 (291)
79 1jx6_A LUXP protein; protein-l 32.8 1.8E+02 0.0063 24.9 8.5 98 6-106 20-137 (342)
80 2l2q_A PTS system, cellobiose- 32.0 1.2E+02 0.0043 22.8 6.5 79 44-125 19-101 (109)
81 3jwg_A HEN1, methyltransferase 31.3 92 0.0032 25.2 6.0 77 29-106 54-141 (219)
82 3m9w_A D-xylose-binding peripl 28.8 60 0.0021 27.7 4.6 77 29-106 2-91 (313)
83 3jy6_A Transcriptional regulat 28.3 1.2E+02 0.004 25.3 6.3 79 26-106 4-93 (276)
84 3ou2_A SAM-dependent methyltra 28.2 1.1E+02 0.0038 24.3 5.9 42 29-80 69-113 (218)
85 8abp_A L-arabinose-binding pro 28.1 1.2E+02 0.004 25.5 6.3 76 29-105 2-89 (306)
86 3dp7_A SAM-dependent methyltra 26.5 81 0.0028 28.4 5.2 49 57-107 230-289 (363)
87 1vbf_A 231AA long hypothetical 26.5 37 0.0013 27.9 2.7 25 57-81 117-141 (231)
88 1vlm_A SAM-dependent methyltra 25.4 74 0.0025 26.0 4.4 34 48-81 76-109 (219)
89 3guv_A Site-specific recombina 25.1 2.6E+02 0.0088 22.2 7.6 35 28-62 4-44 (167)
90 3mi6_A Alpha-galactosidase; NE 24.1 60 0.0021 33.6 4.2 63 41-103 456-524 (745)
91 3nbm_A PTS system, lactose-spe 23.9 2.5E+02 0.0084 21.6 7.1 78 43-124 20-104 (108)
92 3rot_A ABC sugar transporter, 23.7 1.2E+02 0.004 25.7 5.4 79 28-106 2-94 (297)
93 3kjx_A Transcriptional regulat 22.8 2.2E+02 0.0074 24.7 7.2 95 6-104 43-153 (344)
94 2plc_A PI-PLC, phosphatidylino 22.6 77 0.0026 28.1 4.2 44 56-106 56-105 (274)
95 1jg1_A PIMT;, protein-L-isoasp 22.2 50 0.0017 27.5 2.7 24 57-80 141-164 (235)
96 3dbi_A Sugar-binding transcrip 21.7 1.7E+02 0.006 25.2 6.3 81 25-106 57-151 (338)
97 2x7x_A Sensor protein; transfe 21.1 2E+02 0.0069 24.7 6.6 79 26-106 3-95 (325)
98 3jwh_A HEN1; methyltransferase 20.8 75 0.0026 25.8 3.5 78 29-107 54-142 (217)
99 4fnq_A Alpha-galactosidase AGA 20.7 1.1E+02 0.0037 31.2 5.2 63 41-103 455-523 (729)
100 1mhx_A Immunoglobulin-binding 20.5 1.1E+02 0.0038 21.8 3.7 23 203-225 7-30 (65)
101 3tb6_A Arabinose metabolism tr 20.4 1.8E+02 0.0063 24.0 6.0 78 28-106 14-107 (298)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=100.00 E-value=1.2e-46 Score=355.93 Aligned_cols=248 Identities=31% Similarity=0.484 Sum_probs=213.2
Q ss_pred cCCCcEEEEEEechhhhhccchhHHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCC------------hHHHHHHH
Q 023408 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG------------KEWRQILE 92 (282)
Q Consensus 25 ~~~~~~~VGy~l~~KK~~sf~~~~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd------------~~~~~~lq 92 (282)
...++++|||||++||+++|+++.|...++++|+++++||++.++.+|++||+||||+++ ..|.+.|+
T Consensus 14 ~~~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~ 93 (346)
T 2q7d_A 14 TFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQ 93 (346)
T ss_dssp GGGTTCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCceEEEEEECcccchhhhHHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999999999999998 36899999
Q ss_pred HHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccC-CCCchHHHHhcCCccceEeeecccc
Q 023408 93 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERD-ASSIPDVVLKAGLTLPLVAKPLVAD 171 (282)
Q Consensus 93 ~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d-~~~~~~~l~~agL~fPlI~KPlvA~ 171 (282)
+|...||+++||||+++++.+.||..|++.|.+.........|.+|+++++.+. ..++.+.+...++.||+|+||+.++
T Consensus 94 ~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~ 173 (346)
T 2q7d_A 94 EYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAH 173 (346)
T ss_dssp HHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCS
T ss_pred HHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 999999999999999999999999999999988643334457999999999743 3456666777899999999999999
Q ss_pred CCCCceeEEEEeccCccCCCCCceeEEEeeeccceEEEEEEEcceEEEEEecCCCCCCccccccCCcceecc--cccccc
Q 023408 172 GSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFP--RVSCAA 249 (282)
Q Consensus 172 Gsa~SH~Maivf~~~gL~~L~~P~VlQEFINH~gvLfKVYVIGd~v~vv~R~SLpN~~~~~~~~~~g~~~f~--~vS~~~ 249 (282)
||+ +|.|++|++.++|..++.|+++||||||+|+.||||||||++.++.|+|+||+..+.. ..|.++|. ++|+.+
T Consensus 174 Gs~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~~--~~~~~~f~s~~~~~~g 250 (346)
T 2q7d_A 174 GTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTS--DRESIFFNSHNVSKPE 250 (346)
T ss_dssp STT-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGGGTSSTT
T ss_pred cce-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCcc--ccccccccceeeccCC
Confidence 998 9999999999999999999999999999999999999999999999999999877652 45677776 588888
Q ss_pred cCCCCCCCCCC--cccCCchhHHhhccc
Q 023408 250 ASADDADLDPC--VAVCTKCSFLCDGAS 275 (282)
Q Consensus 250 ~~~~~~~~~~~--~~e~pp~~~~~~~a~ 275 (282)
+++....+|+. .+++||.+.++++|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~el~~lA~ 278 (346)
T 2q7d_A 251 SSSVLTELDKIEGVFERPSDEVIRELSR 278 (346)
T ss_dssp CCCGGGCCSCCCSCCCCCCHHHHHHHHH
T ss_pred ccccccccccccccccCCChHHHHHHHH
Confidence 77655554432 478898888888874
No 2
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.90 E-value=2.4e-23 Score=189.39 Aligned_cols=197 Identities=18% Similarity=0.326 Sum_probs=167.1
Q ss_pred ccCCCcEEEEEEechhhhhccchhHHHhHHHhcCcEE--EEecCCCCCCCCC-CceEEEeccCCh--HHHHHHHHHHHhC
Q 023408 24 QQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILF--VAIDQNRPLSDQG-PFDIVLHKLTGK--EWRQILEEYRQTH 98 (282)
Q Consensus 24 ~~~~~~~~VGy~l~~KK~~sf~~~~l~~~~~~~Gi~f--V~ID~~~pL~~Qg-pfDvILHKltd~--~~~~~lq~y~~~h 98 (282)
|...+..+||++..++++ ++ .+...++++|+++ +.+|.+.|+..++ ++|+|+|++++. .+.+.|+.+...+
T Consensus 6 ~~~~~~m~i~il~~~~~~-s~---~l~~al~~~G~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~~~~l~~~~~~~ 81 (324)
T 1z2n_X 6 MTTKQTVSLFIWLPESKQ-KT---LFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRTHPVGKMADEMRKYEKDH 81 (324)
T ss_dssp ----CEEEEEEECCHHHH-HH---HBSSCCSEEEEEETTEEEEEEEESSCCSSCCSEEEECCSCSSSHHHHHHHHHHHHC
T ss_pred cccCCcEEEEEEEchhhh-hh---hHHHHHHhcCcEEEEEEecCCCCccccCCCceEEEEeccchHHHHHHHHHHHHHhC
Confidence 455567899999998887 55 5667788999999 9999987887777 899999999876 6788899998888
Q ss_pred CCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCcee
Q 023408 99 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (282)
Q Consensus 99 P~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~ 178 (282)
+.+.+++++++++...||..+.+.+++. .+.+|+++.++. .+++.+.+...|+.||+|+||..++|+..||.
T Consensus 82 ~g~~~~~~~~~~~~~~dK~~~~~~l~~~-------gi~~P~~~~~~~-~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~g 153 (324)
T 1z2n_X 82 PKVLFLESSAIHDMMSSREEINALLIKN-------NIPIPNSFSVKS-KEEVIQLLQSKQLILPFIVKPENAQGTFNAHQ 153 (324)
T ss_dssp TTSEEETCHHHHHHHTBHHHHHHHHHHT-------TCCCSCEEEESS-HHHHHHHHHTTCSCSSEEEEESBCSSSSGGGE
T ss_pred CCCeEeCCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEEeCC-HHHHHHHHHHcCCCCCEEEeeCCCCCCcccee
Confidence 9999999999999999999999998874 477899998853 22333444556788999999999888888899
Q ss_pred EEEEeccCccCCCCCceeEEEeeeccceEEEEEEEcceEEEEEecCCCCCCccc
Q 023408 179 LSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQD 232 (282)
Q Consensus 179 Maivf~~~gL~~L~~P~VlQEFINH~gvLfKVYVIGd~v~vv~R~SLpN~~~~~ 232 (282)
+.++.+++.|..+..|+++||||++.|.-+.|||+|+.+..+.|++++|+..+.
T Consensus 154 v~~v~~~~~l~~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~~g~ 207 (324)
T 1z2n_X 154 MKIVLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCG 207 (324)
T ss_dssp EEEECSGGGGTTCCSSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCCCSS
T ss_pred eEEEeCHHHHhhcCCCEEEEEccCCCCcEEEEEEECCEEEEEEecCcccccCCC
Confidence 999999999999889999999999999999999999999999999999987653
No 3
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.04 E-value=7.1e-10 Score=97.21 Aligned_cols=159 Identities=15% Similarity=0.209 Sum_probs=110.5
Q ss_pred HHHhHHHhcCcEEEEecCCCCCCC-------CCCceEEEeccCChHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHH
Q 023408 48 KLEGLARNKGILFVAIDQNRPLSD-------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSML 120 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~~-------QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~ai~~L~nR~~ml 120 (282)
.+...++++|+.++.+|.+..... ...+|++++..........++++.++. ++.++.++++++...|+..+.
T Consensus 15 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~dK~~~~ 93 (280)
T 1uc8_A 15 MLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTAL-GIPVVNRPEVIEACGDKWATS 93 (280)
T ss_dssp HHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHHHHHHHHHHHT-TCCEESCHHHHHHHHBHHHHH
T ss_pred HHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECCccchhhHHHHHHHHHC-CCceeCCHHHHHHhCCHHHHH
Confidence 366778999999999997654311 236896666654432233455555555 577788999999999999999
Q ss_pred HHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------C--
Q 023408 121 QCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------L-- 191 (282)
Q Consensus 121 ~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L-- 191 (282)
+.+++. .+.+|+++.+++ .+++.+.+. .+.||+|+||....|+ ..+.++.+++.|.. +
T Consensus 94 ~~l~~~-------gi~~p~~~~~~~-~~~~~~~~~--~~~~p~vvKp~~g~~~---~gv~~v~~~~el~~~~~~~~~~~~ 160 (280)
T 1uc8_A 94 VALAKA-------GLPQPKTALATD-REEALRLME--AFGYPVVLKPVIGSWG---RLLAXXXXXXXXXXXXXXKEVLGG 160 (280)
T ss_dssp HHHHHT-------TCCCCCEEEESS-HHHHHHHHH--HHCSSEEEECSBCCBC---SHHHHHHHHHC------------C
T ss_pred HHHHHc-------CcCCCCeEeeCC-HHHHHHHHH--HhCCCEEEEECCCCCc---ccceecccccccchhhhhHhhhcc
Confidence 998874 366899988852 222222222 3569999999998774 44555666555432 2
Q ss_pred --CCceeEEEeeeccceEEEEEEEcceEEEE
Q 023408 192 --EPPLVLQEFVNHGGVLFKVYIVGEAIKVV 220 (282)
Q Consensus 192 --~~P~VlQEFINH~gvLfKVYVIGd~v~vv 220 (282)
..++++||||+..+.=+.++|+|+.+...
T Consensus 161 ~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~ 191 (280)
T 1uc8_A 161 FQHQLFYIQEYVEKPGRDIRVFVVGERAIAA 191 (280)
T ss_dssp TTTTCEEEEECCCCSSCCEEEEEETTEEEEE
T ss_pred cCCCcEEEEeccCCCCceEEEEEECCEEEEE
Confidence 46899999999878889999999987543
No 4
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=99.00 E-value=2.7e-09 Score=100.63 Aligned_cols=187 Identities=21% Similarity=0.268 Sum_probs=124.3
Q ss_pred CCCcEEEEEEechhhhhccchhHHH-hHHHhcCcEEEEec----CCCCCCCCCCceEEEeccCChHHHHHHHHHHHhCCC
Q 023408 26 QSKLVVVGYALTSKKTKSFLQPKLE-GLARNKGILFVAID----QNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPE 100 (282)
Q Consensus 26 ~~~~~~VGy~l~~KK~~sf~~~~l~-~~~~~~Gi~fV~ID----~~~pL~~QgpfDvILHKltd~~~~~~lq~y~~~hP~ 100 (282)
+.+.++||.|--+||.+|=--+.++ .+.+..-++.+--. ++.|.++=--+|++|--.++-==.+...+|.+.. .
T Consensus 4 ~~~~~~~gvcam~~k~~s~pm~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~lr-~ 82 (330)
T 3t7a_A 4 TERQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKLR-N 82 (330)
T ss_dssp --CCEEEEEESCHHHHTSHHHHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHHH-C
T ss_pred CCCceEEEEEecccccccHHHHHHHHHhcccCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHHh-C
Confidence 4568999999999997775544544 34333344444222 2345554456788887776531123444555553 5
Q ss_pred eEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC-----Cch---HHHH--hcCCccceEeeeccc
Q 023408 101 VTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-----SIP---DVVL--KAGLTLPLVAKPLVA 170 (282)
Q Consensus 101 v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~-----~~~---~~l~--~agL~fPlI~KPlvA 170 (282)
..+|..+.++..+.||...++.|++. .|.+|+.++++.+.. ++. +.+. ...+.+|+|.||+-+
T Consensus 83 p~~INd~~~q~~~~DK~~~~~iL~~~-------gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv~G 155 (330)
T 3t7a_A 83 PFVINDLNMQYLIQDRREVYSILQAE-------GILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSA 155 (330)
T ss_dssp CEESBCSTHHHHHTBHHHHHHHHHHT-------TCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEEESBT
T ss_pred CceeCCHHHHHHHHHHHHHHHHHHHc-------CCCCCCEEEEeCCCCCccccceeccchhhhhccccccCCeeEccccc
Confidence 67899999999999999999999873 588999999975432 000 1111 234679999999985
Q ss_pred cCCCCceeEEEEec----------------cCc------cCCCCCceeEEEeeeccceEEEEEEEcceE-EEEEecC
Q 023408 171 DGSAKSHELSLAYD----------------QYS------LKKLEPPLVLQEFVNHGGVLFKVYIVGEAI-KVVRRFS 224 (282)
Q Consensus 171 ~Gsa~SH~Maivf~----------------~~g------L~~L~~P~VlQEFINH~gvLfKVYVIGd~v-~vv~R~S 224 (282)
. -|...|-|. .++ ...-+...++||||..+|.-.||||||+.+ ....|.|
T Consensus 156 s----dhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~s 228 (330)
T 3t7a_A 156 E----DHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKS 228 (330)
T ss_dssp T----CCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEEC
T ss_pred c----cCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEEEEEEeC
Confidence 3 244444443 111 222345899999999999999999999777 5688887
No 5
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.84 E-value=3.1e-08 Score=88.23 Aligned_cols=151 Identities=19% Similarity=0.214 Sum_probs=108.8
Q ss_pred HHHhHHHhcCcEEEEecCCCCCCC---CCCceEEEeccCC---h--HHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHH
Q 023408 48 KLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTG---K--EWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQS 118 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~~---QgpfDvILHKltd---~--~~~~~lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ 118 (282)
.+...+++.|++++.+|.+..... ...+|+|+..+.+ + .+...++.+ ++.++ .++++++...|+..
T Consensus 25 ~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~e~~~~~~~~e~~-----g~~~~g~~~~~~~~~~dK~~ 99 (306)
T 1iow_A 25 AVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELM-----GLPYTGSGVMASALSMDKLR 99 (306)
T ss_dssp HHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSSSHHHHHHHHH-----TCCBSSCCHHHHHHHHCHHH
T ss_pred HHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEcCCCCCCcchHHHHHHHHc-----CCCccCCCHHHHHHHcCHHH
Confidence 466778899999999998743222 2478999877632 1 233333332 56665 78999999999999
Q ss_pred HHHHHHhccccCCCCcccCCceEEEccCCCCchH-------HHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-
Q 023408 119 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPD-------VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK- 190 (282)
Q Consensus 119 ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~-------~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~- 190 (282)
+.+.+++. .+.+|+++.++.. ++.+ .. ...+.||+|+||....|+ ..+.++.+.+.|..
T Consensus 100 ~~~~l~~~-------gi~~p~~~~~~~~--~~~~~~~~~~~~~-~~~~~~p~vvKP~~g~~~---~gv~~v~~~~el~~~ 166 (306)
T 1iow_A 100 SKLLWQGA-------GLPVAPWVALTRA--EFEKGLSDKQLAE-ISALGLPVIVKPSREGSS---VGMSKVVAENALQDA 166 (306)
T ss_dssp HHHHHHHT-------TCCBCCEEEEEHH--HHHHCCCTHHHHH-HHTTCSSEEEEETTCCTT---TTCEEESSGGGHHHH
T ss_pred HHHHHHHC-------CCCCCCeEEEchh--hhhccchhhhhhH-HhccCCCEEEEeCCCCCC---CCEEEeCCHHHHHHH
Confidence 99998864 3678999888632 2211 01 235789999999988764 55678888877652
Q ss_pred ------CCCceeEEEeeeccceEEEEEEEcceEE
Q 023408 191 ------LEPPLVLQEFVNHGGVLFKVYIVGEAIK 218 (282)
Q Consensus 191 ------L~~P~VlQEFINH~gvLfKVYVIGd~v~ 218 (282)
...++++||||+ |.-|-|.++|+.+.
T Consensus 167 ~~~~~~~~~~~lvee~i~--g~e~~v~~~~g~~~ 198 (306)
T 1iow_A 167 LRLAFQHDEEVLIEKWLS--GPEFTVAILGEEIL 198 (306)
T ss_dssp HHHHTTTCSEEEEEECCC--CCEEEEEEETTEEC
T ss_pred HHHHHhhCCCEEEEeCcC--CEEEEEEEECCCcc
Confidence 257999999998 68899999998753
No 6
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.84 E-value=6.6e-09 Score=93.37 Aligned_cols=154 Identities=14% Similarity=0.180 Sum_probs=108.8
Q ss_pred HHhHHHhcCcEEEEecCCCC---CCCCCCceEEEeccCChHHH-HHHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHHHH
Q 023408 49 LEGLARNKGILFVAIDQNRP---LSDQGPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCV 123 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~p---L~~QgpfDvILHKltd~~~~-~~lq~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~~l 123 (282)
+...+++.|++.+.+|.+.. +.....+|+|+.-+.+.... ..++.+.+.. ++.++-| +++++...|+..+.+.+
T Consensus 27 v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~~-gi~~~g~~~~~~~~~~dK~~~~~~l 105 (307)
T 3r5x_A 27 MIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLESL-GIPYSGSNMLSSGICMDKNISKKIL 105 (307)
T ss_dssp HHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHHH-TCCBSSSCHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHHc-CCCeeCcCHHHHHHHcCHHHHHHHH
Confidence 55566788999999999843 33335899999987654211 1223333332 5777765 89999999999999998
Q ss_pred HhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCC-------CCcee
Q 023408 124 ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLV 196 (282)
Q Consensus 124 ~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L-------~~P~V 196 (282)
++. .|.+|++++++... +..... ...+.||+|+||....| |..+.++.+++.|... ..+++
T Consensus 106 ~~~-------Gip~p~~~~~~~~~-~~~~~~-~~~~~~P~vvKP~~~~~---s~Gv~~v~~~~el~~~~~~~~~~~~~~l 173 (307)
T 3r5x_A 106 RYE-------GIETPDWIELTKME-DLNFDE-LDKLGFPLVVKPNSGGS---SVGVKIVYDKDELISMLETVFEWDSEVV 173 (307)
T ss_dssp HHT-------TCCCCCEEEEESSS-CCCHHH-HHHHCSSEEEEECC-------CCCEEECSHHHHHHHHHHHHHHCSEEE
T ss_pred HHC-------CCCCCCEEEEeChh-hhhHHH-HHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCEE
Confidence 874 47789999986432 222211 23468999999988766 5677889888777532 57999
Q ss_pred EEEeeeccceEEEEEEEcceE
Q 023408 197 LQEFVNHGGVLFKVYIVGEAI 217 (282)
Q Consensus 197 lQEFINH~gvLfKVYVIGd~v 217 (282)
+||||. |.-|-|.|+|+.+
T Consensus 174 vee~i~--G~e~~v~v~~g~~ 192 (307)
T 3r5x_A 174 IEKYIK--GEEITCSIFDGKQ 192 (307)
T ss_dssp EEECCC--SEEEEEEEETTEE
T ss_pred EECCcC--CEEEEEEEECCEE
Confidence 999999 6899999999976
No 7
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.71 E-value=3.4e-07 Score=83.28 Aligned_cols=156 Identities=14% Similarity=0.076 Sum_probs=107.4
Q ss_pred HHhHHHhcCcEEEEecCCCCCCC---CCCceEEEeccCChH-HHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHH
Q 023408 49 LEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGKE-WRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCV 123 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL~~---QgpfDvILHKltd~~-~~~~lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l 123 (282)
+....++.|++.+.||....... ...+|+++--+.+.. ....++.+.+.. ++.++ .+++++...+|+..+.+.+
T Consensus 37 v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~~~le~~-gip~~g~~~~~~~~~~dK~~~k~~l 115 (317)
T 4eg0_A 37 VLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGGYGENGQIQGALDFY-GIRYTGSGVLGSALGLDKFRTKLVW 115 (317)
T ss_dssp HHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSGGGTSSHHHHHHHHH-TCEESSCCHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCCCCchHHHHHHHHHc-CCCeeCcCHHHHHHHhCHHHHHHHH
Confidence 55667889999999996543222 257999986665431 011233444333 67777 6778999999999999998
Q ss_pred HhccccCCCCcccCCceEEEccCCCCchHHHH--hcCCccceEeeeccccCCCCceeEEEEeccCccC-------CCCCc
Q 023408 124 ADMNLSNSYGKVDVPRQLVIERDASSIPDVVL--KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK-------KLEPP 194 (282)
Q Consensus 124 ~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~--~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~-------~L~~P 194 (282)
++. .+.+|+++.++.. ++..+... ...+.||+|+||....| |..+.++.+++.|. ....+
T Consensus 116 ~~~-------Gip~p~~~~~~~~-~~~~~~~~~~~~~~g~PvvvKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~ 184 (317)
T 4eg0_A 116 QQT-------GVPTPPFETVMRG-DDYAARATDIVAKLGLPLFVKPASEGS---SVAVLKVKTADALPAALSEAATHDKI 184 (317)
T ss_dssp HHT-------TCCCCCEEEEETT-SCHHHHHHHHHHHHCSCEEEEECC--------CCEEECSGGGHHHHHHHHTTTCSE
T ss_pred HHC-------CcCCCCEEEEECc-hhHHHHHHHHHHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhCCCe
Confidence 875 4778999988643 23322220 13578999999988765 45667889988875 23568
Q ss_pred eeEEEeeeccceEEEEEEEcceE
Q 023408 195 LVLQEFVNHGGVLFKVYIVGEAI 217 (282)
Q Consensus 195 ~VlQEFINH~gvLfKVYVIGd~v 217 (282)
+++||||.+ |.=|-|.|+||.+
T Consensus 185 ~lvEe~i~~-G~E~~v~vl~~~~ 206 (317)
T 4eg0_A 185 VIVEKSIEG-GGEYTACIAGDLD 206 (317)
T ss_dssp EEEEECCCS-SEEEEEEEETTCC
T ss_pred EEEEcCCCC-CcEEEEEEECCcc
Confidence 999999997 7889999999953
No 8
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=98.69 E-value=4.2e-08 Score=90.84 Aligned_cols=149 Identities=13% Similarity=0.128 Sum_probs=108.1
Q ss_pred HHhHHHhcCcEEEEecCCCCC--------------------------------------CCCCCceEEEeccCChHHH-H
Q 023408 49 LEGLARNKGILFVAIDQNRPL--------------------------------------SDQGPFDIVLHKLTGKEWR-Q 89 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL--------------------------------------~~QgpfDvILHKltd~~~~-~ 89 (282)
+....++.|++.++||.++.. .++..+|+|+.-+.+.... .
T Consensus 27 v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~lhG~~gedg 106 (346)
T 3se7_A 27 VATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHGLLVLEQGKYETIRLDLVLPVLHGKLGEDG 106 (346)
T ss_dssp HHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCEEEEEETTEEEEEECSEEEECCCSTTTTSS
T ss_pred HHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCccceecccccccccCCCEEEEccCCCCCCCh
Confidence 444556789999999987642 0123689998888654211 1
Q ss_pred HHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeec
Q 023408 90 ILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 168 (282)
Q Consensus 90 ~lq~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPl 168 (282)
.+|.+.+.. ++.++-| +.++...+|+..+.+.+++. .|.+|+++.++..... ....+.||+|+||.
T Consensus 107 ~iq~~le~~-gip~~g~~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~-----~~~~lg~PvvvKP~ 173 (346)
T 3se7_A 107 AIQGLLELS-GIPYVGCDIQSSALCMDKSLTYLVARSA-------GIATPNFWTVTADEKI-----PTDQLTYPVFVKPA 173 (346)
T ss_dssp HHHHHHHHH-CCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEEETTSCC-----CTTTCCSSEEEEES
T ss_pred HHHHHHHHc-CCCeeCcCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEcCcHHH-----HHHhcCCCEEEEeC
Confidence 233443332 5666665 88999999999999998875 4778999999643311 13468999999999
Q ss_pred cccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEEcc
Q 023408 169 VADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 169 vA~Gsa~SH~Maivf~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
...| |..+.++.+++.|.. ...++++||||+ |.-|-|.|+|+
T Consensus 174 ~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~E~~v~vl~~ 222 (346)
T 3se7_A 174 RSGS---SFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI--GTEIGCAVMGN 222 (346)
T ss_dssp SCCT---TTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEEE
T ss_pred CCCC---CcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC--CEEEEEEEEec
Confidence 8766 566788999877752 357999999999 78999999998
No 9
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=98.62 E-value=1.4e-07 Score=88.06 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=96.4
Q ss_pred CceEEEeccCCh------HHHHHHHHHHHhCCCeEEeCchhHHhhhcCH----HHHHHHHHhccccCCCCcccCCceEEE
Q 023408 74 PFDIVLHKLTGK------EWRQILEEYRQTHPEVTVLDPPYAIQHLHNR----QSMLQCVADMNLSNSYGKVDVPRQLVI 143 (282)
Q Consensus 74 pfDvILHKltd~------~~~~~lq~y~~~hP~v~VIDP~~ai~~L~nR----~~ml~~l~~l~~~~~~~~i~vP~~vvi 143 (282)
.+|++|=+.... .|+..+..+ +. -.+++|+++++|....|+ ..+++.+..+.. ..+..|.....
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~~l-e~-~GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi----~~~P~~~~~~~ 141 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVIGM-QY-AGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGG----EKFPLIEQTYY 141 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHHHH-HH-TTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEE
T ss_pred cCCEEEEecccccccccchHHHHHHHH-HH-CCccccCCHHHHHHhCCccHHHHHHHHHHHhCCC----CCCCCCCEEee
Confidence 479887776543 245444433 33 389999999999999999 566777766543 12342333333
Q ss_pred ccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCC-------CCceeEEEeeeccceEEEEEEEcce
Q 023408 144 ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 144 ~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L-------~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
. +. .+.+ ..+.||+|+||+.+++ ...+.++-+++.+.++ +..+++||||. .|.-+.|||||++
T Consensus 142 ~-~~---~~~~--~~~g~PvVvK~~~Gs~---G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~ 211 (309)
T 1i7n_A 142 P-NH---REML--TLPTFPVVVKIGHAHS---GMGKVKVENHYDFQDIASVVALTQTYATAEPFID-AKYDIRVQKIGNN 211 (309)
T ss_dssp S-SG---GGGS--SCCCSSEEEEESSCST---TTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-Ch---hhhh--hccCCCEEEEeCCCCc---eeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC-CCceEEEEEECCE
Confidence 2 21 1222 2367999999999654 5679999998887532 57889999999 7999999999999
Q ss_pred EEEEEecCC
Q 023408 217 IKVVRRFSL 225 (282)
Q Consensus 217 v~vv~R~SL 225 (282)
+....|.|.
T Consensus 212 v~a~~Rr~~ 220 (309)
T 1i7n_A 212 YKAYMRTSI 220 (309)
T ss_dssp EEEEEEESS
T ss_pred EEEEEEEcC
Confidence 999999875
No 10
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=98.56 E-value=2.6e-07 Score=87.60 Aligned_cols=136 Identities=13% Similarity=0.207 Sum_probs=97.3
Q ss_pred CceEEEeccCCh------HHHHHHHHHHHhCCCeEEeCchhHHhhhcCH----HHHHHHHHhccccCCCCcccCCceEEE
Q 023408 74 PFDIVLHKLTGK------EWRQILEEYRQTHPEVTVLDPPYAIQHLHNR----QSMLQCVADMNLSNSYGKVDVPRQLVI 143 (282)
Q Consensus 74 pfDvILHKltd~------~~~~~lq~y~~~hP~v~VIDP~~ai~~L~nR----~~ml~~l~~l~~~~~~~~i~vP~~vvi 143 (282)
.+|++|=+.... .|+..+..+ +. -.+.+|+++++|....|+ ..+++.+..+.. ..+..|.....
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~l-e~-~GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi----~~~P~~~~t~~ 158 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGL-QY-GGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGP----EKFPLVEQTFF 158 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHH-HH-TTCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCT----TTSCBCCCEEE
T ss_pred CCCEEEEeccccccccchhHHHHHHHH-HH-CCceecCCHHHHHhhCCchHHHHHHHHHHHHCCC----CCCCCCCEEec
Confidence 589888777652 245444433 33 389999999999999999 667777766543 13342333333
Q ss_pred ccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEEcce
Q 023408 144 ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 144 ~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
. +..++ ...+.||+|+||+.+++ ...+.++-+++.+.+ .+..+++||||+ .|.-+.|||||++
T Consensus 159 ~-~~~~~-----~~~~g~PvVvK~~~Gs~---G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~ 228 (344)
T 2p0a_A 159 P-NHKPM-----VTAPHFPVVVKLGHAHA---GMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-SKYDIRIQKIGSN 228 (344)
T ss_dssp S-SSTTC-----CCCSSSSEEEEESSCCT---TTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-chhhh-----hhccCCCEEEEeCCCCc---eeCeEEECCHHHHHHHHHHHhccCCeEEEEeccC-CCccEEEEEECCE
Confidence 2 22222 12468999999999654 567999999888763 256788999999 7999999999999
Q ss_pred EEEEEecCC
Q 023408 217 IKVVRRFSL 225 (282)
Q Consensus 217 v~vv~R~SL 225 (282)
+....|.|.
T Consensus 229 vva~~R~~~ 237 (344)
T 2p0a_A 229 YKAYMRTSI 237 (344)
T ss_dssp EEEEEEEES
T ss_pred EEEEEEecC
Confidence 998888874
No 11
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=98.46 E-value=6.3e-07 Score=87.30 Aligned_cols=136 Identities=14% Similarity=0.193 Sum_probs=96.4
Q ss_pred CceEEEeccCCh------HHHHHHHHHHHhCCCeEEeCchhHHhhhcCH----HHHHHHHHhccccCCCCcccCCceEEE
Q 023408 74 PFDIVLHKLTGK------EWRQILEEYRQTHPEVTVLDPPYAIQHLHNR----QSMLQCVADMNLSNSYGKVDVPRQLVI 143 (282)
Q Consensus 74 pfDvILHKltd~------~~~~~lq~y~~~hP~v~VIDP~~ai~~L~nR----~~ml~~l~~l~~~~~~~~i~vP~~vvi 143 (282)
.+|++|=+.... .|+..+..+ +. -.+.+|+++++|....|+ ..+++.+..+.. ..+..|.+...
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr~l-E~-~GvpviNs~~sI~~~~DK~~vf~~~l~ll~~~gi----~~iP~t~~t~~ 253 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVIGL-QY-AGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGT----EEFPLIDQTFY 253 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHHHH-HH-TTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEE
T ss_pred CCCEEEEeccccccccchhHHHHHHHH-HH-CCccccCCHHHHHHhCCccHHHHHHHHHHHhCCC----CCCCCCceEec
Confidence 479888777543 255444434 33 389999999999999999 566776666543 12332333333
Q ss_pred ccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCC-------CCceeEEEeeeccceEEEEEEEcce
Q 023408 144 ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 144 ~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L-------~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
. +. .+.+ ..+.||+|+||+.+++ ...+.++-+++.+..+ +..+++||||. .+.-+.|||||++
T Consensus 254 ~-~~---~~~i--~~~g~PvVvKp~~GS~---G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~ 323 (422)
T 1pk8_A 254 P-NH---KEML--SSTTYPVVVKMGHAHS---GMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-AKYDVRVQKIGQN 323 (422)
T ss_dssp S-SG---GGCC--CCSSSSEEEEESSCCT---TTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-ch---hhhh--hccCCCEEEEeCCCCc---eeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-CCceEEEEEECCE
Confidence 2 21 1112 2467999999999654 5779999998887632 56788999999 7899999999999
Q ss_pred EEEEEecCC
Q 023408 217 IKVVRRFSL 225 (282)
Q Consensus 217 v~vv~R~SL 225 (282)
+....|.|.
T Consensus 324 vva~~Rr~~ 332 (422)
T 1pk8_A 324 YKAYMRTSV 332 (422)
T ss_dssp EEEEEEEES
T ss_pred EEEEEEEcC
Confidence 998888774
No 12
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=98.31 E-value=1.4e-06 Score=77.32 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=103.2
Q ss_pred HHHhHHHhcCcEEEEecCCCCC-C-----------------------------CCCCceEEEeccCC---hHH--HHHHH
Q 023408 48 KLEGLARNKGILFVAIDQNRPL-S-----------------------------DQGPFDIVLHKLTG---KEW--RQILE 92 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL-~-----------------------------~QgpfDvILHKltd---~~~--~~~lq 92 (282)
.+...++++|+.++.+|.+..- . +-..+|+|+-.... .++ ...+.
T Consensus 23 ~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~ 102 (316)
T 1gsa_A 23 AMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYIL 102 (316)
T ss_dssp HHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGGGSSEEEECCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEeccCcccceeccCccccccccCCEEEEecCCCCchhhHHHHHHH
Confidence 4667788999999999865210 0 00136777765542 222 22333
Q ss_pred HHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccC
Q 023408 93 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (282)
Q Consensus 93 ~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~G 172 (282)
+..+.. .+.++.++++++...|+..+.+.++ .+|+++.++ +.+++.+.+.+. . |+|+||....|
T Consensus 103 ~~l~~~-g~~~~~~~~~~~~~~dK~~~~~~l~-----------~~P~t~~~~-~~~~~~~~~~~~--~-p~vvKP~~g~~ 166 (316)
T 1gsa_A 103 ERAEEK-GTLIVNKPQSLRDCNEKLFTAWFSD-----------LTPETLVTR-NKAQLKAFWEKH--S-DIILKPLDGMG 166 (316)
T ss_dssp HHHHHT-TCEEESCHHHHHHCCTTGGGGGGTT-----------TSCCEEEES-CHHHHHHHHHHH--S-SEEEECSSCCT
T ss_pred HHHHHc-CCeEecCHHHHHhhhhHHHHHhhhh-----------cCCCeEEeC-CHHHHHHHHHHc--C-CEEEEECCCCC
Confidence 433343 5678899999999999988777543 579988875 222333333333 3 99999998765
Q ss_pred CCCceeEEEEe-ccCccC-------CC-CCceeEEEeeecc-ceEEEEEEEcceEEE--EEec
Q 023408 173 SAKSHELSLAY-DQYSLK-------KL-EPPLVLQEFVNHG-GVLFKVYIVGEAIKV--VRRF 223 (282)
Q Consensus 173 sa~SH~Maivf-~~~gL~-------~L-~~P~VlQEFINH~-gvLfKVYVIGd~v~v--v~R~ 223 (282)
+..+.++. +++.|. .. ..|+++||||+.. +.=+-|+|+|+.+.. +.|.
T Consensus 167 ---g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~~~~~~r~ 226 (316)
T 1gsa_A 167 ---GASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARI 226 (316)
T ss_dssp ---TTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECSEEEEEE
T ss_pred ---cccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEeeeEEEEe
Confidence 45567777 666653 22 3699999999973 788899999998763 4443
No 13
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.29 E-value=8.7e-06 Score=76.13 Aligned_cols=155 Identities=10% Similarity=0.107 Sum_probs=99.7
Q ss_pred hhHHHhHHHhcCcEEEEecCCCCCCCCCCce-EEEeccCChHHH------------------HHHHHHHHhCCCeEEeCc
Q 023408 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFD-IVLHKLTGKEWR------------------QILEEYRQTHPEVTVLDP 106 (282)
Q Consensus 46 ~~~l~~~~~~~Gi~fV~ID~~~pL~~QgpfD-vILHKltd~~~~------------------~~lq~y~~~hP~v~VIDP 106 (282)
...+...+++.|+..+-+|.+..-....-.| .+.--..|.... ..+-++.+++. + +--+
T Consensus 26 g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~e~~~~~~~~~l~~~g-~-~~~~ 103 (389)
T 3q2o_A 26 GRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEFENIDYRCLQWLEKHA-Y-LPQG 103 (389)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESCCCCCHHHHHHHHHHS-C-CTTC
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeeccccccHHHHHHHHhhC-c-cCCC
Confidence 4456667889999999999864322211122 222233332111 01112222222 1 4567
Q ss_pred hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccC
Q 023408 107 PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY 186 (282)
Q Consensus 107 ~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~ 186 (282)
+++++...||..+.+.++++ .+.+|++..+++ .+++.+... .+.||+|+||....| .+..|.++.+++
T Consensus 104 ~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~~~~--~g~Gv~~v~~~~ 171 (389)
T 3q2o_A 104 SQLLSKTQNRFTEKNAIEKA-------GLPVATYRLVQN-QEQLTEAIA--ELSYPSVLKTTTGGY--DGKGQVVLRSEA 171 (389)
T ss_dssp SHHHHHTTSHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHHH--HHCSSEEEEESSCCS--SSCCEEEESSGG
T ss_pred HHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--hcCCCEEEEeCCCCC--CCCCeEEECCHH
Confidence 78999999999999998875 467899998853 222222222 467999999976432 357899999998
Q ss_pred ccCCC-----CCceeEEEeeeccceEEEEEEEcc
Q 023408 187 SLKKL-----EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 187 gL~~L-----~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
.|... ..++++||||+ ++.=|-|.+++|
T Consensus 172 el~~~~~~~~~~~~lvEe~i~-g~~E~~v~~~~~ 204 (389)
T 3q2o_A 172 DVDEARKLANAAECILEKWVP-FEKEVSVIVIRS 204 (389)
T ss_dssp GHHHHHHHHHHSCEEEEECCC-CSEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEeccc-CceEEEEEEEEc
Confidence 87643 46999999999 457788888865
No 14
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=98.20 E-value=3.4e-06 Score=78.33 Aligned_cols=126 Identities=21% Similarity=0.286 Sum_probs=87.8
Q ss_pred CCceEEEecc---CCh--HHHHHHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccC
Q 023408 73 GPFDIVLHKL---TGK--EWRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERD 146 (282)
Q Consensus 73 gpfDvILHKl---td~--~~~~~lq~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d 146 (282)
..+|+|+--+ .++ .+...++.+ ++.++-| ++++...+|+..+.+.+++. .+.+|+++.++..
T Consensus 86 ~~~D~v~~~~~g~~~ed~~~~~~le~~-----gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~ 153 (364)
T 2i87_A 86 QPYDAVFPLLHGPNGEDGTIQGLFEVL-----DVPYVGNGVLSAASSMDKLVMKQLFEHR-------GLPQLPYISFLRS 153 (364)
T ss_dssp SBCSEEEEECCCSSSCTTHHHHHHHHH-----TCCBSSCCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEEEEHH
T ss_pred cCCCEEEEeCCCCCCcCHHHHHHHHHc-----CCCccCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEech
Confidence 3678888544 222 233333332 5666655 89999999999999998875 3668999988532
Q ss_pred CC-----CchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEEc
Q 023408 147 AS-----SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVG 214 (282)
Q Consensus 147 ~~-----~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIG 214 (282)
.. +....+ ...+.||+|+||....| |..+.+|.+++.|.. ...++++||||+ |.-|-|.|+|
T Consensus 154 ~~~~~~~~~~~~~-~~~~g~PvvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~ 227 (364)
T 2i87_A 154 EYEKYEHNILKLV-NDKLNYPVFVKPANLGS---SVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN--AREIEVAVLG 227 (364)
T ss_dssp HHHHHHHHHHHHH-HHHCCSSEEEEESSCSS---CTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC--CEEEEEEEEE
T ss_pred hhcccchhHHHHH-HHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc--CeEEEEEEEc
Confidence 10 001111 13478999999998776 456888999877752 357999999998 6889999999
Q ss_pred ce
Q 023408 215 EA 216 (282)
Q Consensus 215 d~ 216 (282)
|.
T Consensus 228 ~~ 229 (364)
T 2i87_A 228 ND 229 (364)
T ss_dssp SS
T ss_pred CC
Confidence 85
No 15
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.11 E-value=4e-05 Score=71.03 Aligned_cols=148 Identities=14% Similarity=0.177 Sum_probs=95.7
Q ss_pred HHHhHHHhcCcEEEEecCCCCCC-CC--------------------CCceEEEeccCChHHHHHHHHHHHhCCCeEEeCc
Q 023408 48 KLEGLARNKGILFVAIDQNRPLS-DQ--------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDP 106 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~-~Q--------------------gpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP 106 (282)
.+...+++.|+..+-+|.+..-. .+ ..+|+|+--..+.. ..+.++.++. .+.+.-+
T Consensus 15 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~~--~~~~~~l~~~-gi~~~~~ 91 (380)
T 3ax6_A 15 MMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEHID--VQTLKKLYNE-GYKIHPS 91 (380)
T ss_dssp HHHHHHHHTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHHTCSEEEESCSCSC--HHHHHHHHHT-TCEESSC
T ss_pred HHHHHHHHCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHhcCCEEEecccCCC--HHHHHHHHHC-CCeECCC
Confidence 45556788899999998853211 11 12344432111111 1122233333 4556688
Q ss_pred hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeecccc-CCCCceeEEEEecc
Q 023408 107 PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD-GSAKSHELSLAYDQ 185 (282)
Q Consensus 107 ~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~-Gsa~SH~Maivf~~ 185 (282)
+++++...|+..+.+.+++. .+.+|++..+++. ++ ....+.||+|+||.... | +..+.++.++
T Consensus 92 ~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~-~~-----~~~~~~~P~vvKp~~~~y~---g~Gv~~v~~~ 155 (380)
T 3ax6_A 92 PYTLEIIQDKFVQKEFLKKN-------GIPVPEYKLVKDL-ES-----DVREFGFPVVQKARKGGYD---GRGVFIIKNE 155 (380)
T ss_dssp HHHHHHHHSHHHHHHHHHHT-------TCCCCCEEECSSH-HH-----HHHTTCSSEEEEESCCC--------EEEECSG
T ss_pred HHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEeCCH-HH-----HHHhcCCCEEEEecCCCCC---CCCeEEECCH
Confidence 89999999999999988864 3668999887521 11 12357899999999764 4 5678889998
Q ss_pred CccCC-CCCceeEEEeeeccceEEEEEEEcc
Q 023408 186 YSLKK-LEPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 186 ~gL~~-L~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
+.|.. ++.++++||||+. |.-|-|.+++|
T Consensus 156 ~el~~~~~~~~lvEe~i~~-g~e~sv~~~~~ 185 (380)
T 3ax6_A 156 KDLENAIKGETYLEEFVEI-EKELAVMVARN 185 (380)
T ss_dssp GGGGGCCCSSEEEEECCCE-EEEEEEEEEEC
T ss_pred HHHHHHhcCCEEEEeccCC-CeeEEEEEEEC
Confidence 88764 3479999999986 67888888875
No 16
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.10 E-value=2.1e-05 Score=73.79 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=88.9
Q ss_pred CceEEEeccCChHH-HHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC--C
Q 023408 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS--S 149 (282)
Q Consensus 74 pfDvILHKltd~~~-~~~lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~--~ 149 (282)
.+|+|+--+.+..- ...++...+.. ++.++ -+++++...+|+..+.+.+++. .|.+|+++.++.... .
T Consensus 93 ~~D~v~~~~~g~~gedg~~~~lle~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 164 (377)
T 1ehi_A 93 DFDIFFPVVHGNLGEDGTLQGLFKLL-DKPYVGAPLRGHAVSFDKALTKELLTVN-------GIRNTKYIVVDPESANNW 164 (377)
T ss_dssp CCSEEEEECCSTTTSSSHHHHHHHHT-TCCBSSCCHHHHHHHHSHHHHHHHHHTT-------TCCCCCEEEECTTGGGGC
T ss_pred CCCEEEEecCCCCCcCHHHHHHHHHc-CCCEeCcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCEEEEeccccchH
Confidence 68888766533210 01233333333 67776 7789999999999999998864 477899999864321 1
Q ss_pred chHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccC-------CCCCceeEEEeeeccceEEEEEEEcce
Q 023408 150 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK-------KLEPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 150 ~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~-------~L~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
....+. ..+.||+|+||....|+ ..+.+|.+++.|. ....++++||||. |..=|-|.|+||.
T Consensus 165 ~~~~~~-~~~g~PvvVKP~~~~~s---~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~~E~~v~vl~~~ 233 (377)
T 1ehi_A 165 SWDKIV-AELGNIVFVKAANQGSS---VGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN-GARELEVGVIGND 233 (377)
T ss_dssp CHHHHH-HHHCSCEEEEESSCCTT---TTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC-CSCEEEEEEEESS
T ss_pred HHHHHH-HhcCCCEEEEeCCCCCC---cCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC-CCceEEEEEEcCC
Confidence 122221 24679999999987664 5678899887765 2356999999997 2267889999983
No 17
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.07 E-value=3.5e-05 Score=73.03 Aligned_cols=156 Identities=17% Similarity=0.130 Sum_probs=100.1
Q ss_pred chhHHHhHHHhcCcEEEEecCCCCC-CCCC--CceEEEeccCChHHHHHH------------------HHHHHhCCCeEE
Q 023408 45 LQPKLEGLARNKGILFVAIDQNRPL-SDQG--PFDIVLHKLTGKEWRQIL------------------EEYRQTHPEVTV 103 (282)
Q Consensus 45 ~~~~l~~~~~~~Gi~fV~ID~~~pL-~~Qg--pfDvILHKltd~~~~~~l------------------q~y~~~hP~v~V 103 (282)
....+...|++.|+.++.+| +..- ..|- .+..+.-..+|......+ -++.++ .+.+
T Consensus 35 lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~e~e~~~~~~l~~l~~--g~~v 111 (403)
T 3k5i_A 35 LGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTAEIEHVDTYALEEVAS--EVKI 111 (403)
T ss_dssp HHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEESSSCSCHHHHHHHTT--TSEE
T ss_pred HHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEECCCCCCHHHHHHHHc--CCcc
Confidence 33446667888999999999 4321 1121 123444444454322111 122222 4556
Q ss_pred eCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEcc-CCCCchHHHHhcCCccceEeeeccccCCCCceeEEEE
Q 023408 104 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (282)
Q Consensus 104 IDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~-d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maiv 182 (282)
.-++++++...||..+.+.++++ .|.+|++..++. +.+++.+.. ..+.||+|+||.... ..+..+.++
T Consensus 112 ~p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~--~~~g~P~VvKp~~gg--~~g~Gv~~v 180 (403)
T 3k5i_A 112 EPSWQAIRTIQNKFNQKEHLRKY-------GIPMAEHRELVENTPAELAKVG--EQLGYPLMLKSKTMA--YDGRGNFRV 180 (403)
T ss_dssp SSCHHHHHHHTSHHHHHHHHHTT-------TCCBCCEEEESSCCHHHHHHHH--HHHCSSEEEEESSSC--CTTTTEEEE
T ss_pred CcCHHHHHHhcCHHHHHHHHHHC-------CcCCCCEEEEcCCCHHHHHHHH--HHhCCCEEEEeCCCC--cCCCCEEEE
Confidence 77889999999999999988764 477899998863 222222222 246799999997543 235678899
Q ss_pred eccCccCC----C-CCceeEEEeeeccceEEEEEEEcc
Q 023408 183 YDQYSLKK----L-EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 183 f~~~gL~~----L-~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
.+++.|.. + ..++++||||+. +.=|=|.+++|
T Consensus 181 ~~~~el~~a~~~~~~~~~lvEe~i~~-~~E~sv~v~~~ 217 (403)
T 3k5i_A 181 NSQDDIPEALEALKDRPLYAEKWAYF-KMELAVIVVKT 217 (403)
T ss_dssp CSTTSHHHHHHHTTTSCEEEEECCCE-EEEEEEEEEEC
T ss_pred CCHHHHHHHHHhcCCCcEEEecCCCC-CeEEEEEEEEc
Confidence 99888753 2 469999999974 56666777765
No 18
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.04 E-value=9e-05 Score=69.38 Aligned_cols=150 Identities=14% Similarity=0.133 Sum_probs=94.0
Q ss_pred HHHhHHHhcCcEEEEecCCCCCCCCCCce-EEEeccCChHHH-------------------HHHHHHHHhCCCeEEeCch
Q 023408 48 KLEGLARNKGILFVAIDQNRPLSDQGPFD-IVLHKLTGKEWR-------------------QILEEYRQTHPEVTVLDPP 107 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~~QgpfD-vILHKltd~~~~-------------------~~lq~y~~~hP~v~VIDP~ 107 (282)
.+...|++.|+..+-+|.+..-....-.| .+.--.+|.+.. ..+....+.. .|.-++
T Consensus 26 ~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E~~~~~~l~~l~~~~---~v~p~~ 102 (377)
T 3orq_A 26 MMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLKLLCEKY---NIPQGY 102 (377)
T ss_dssp HHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESSTTSCHHHHHHHHHHS---CCTTTT
T ss_pred HHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecccccCHHHHHHHhhhc---CCCCCH
Confidence 45667888999999999764311111112 222223332211 1122222221 233456
Q ss_pred hHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCc
Q 023408 108 YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS 187 (282)
Q Consensus 108 ~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~g 187 (282)
++++...||..+.+.++++ .+.+|++..+++ .+++.+... .+.||+|+||.... ..++.+.++.+++.
T Consensus 103 ~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~gg--~~g~Gv~~v~~~~e 170 (377)
T 3orq_A 103 QAIQLLQDRLTEKETLKSA-------GTKVVPFISVKE-STDIDKAIE--TLGYPFIVKTRFGG--YDGKGQVLINNEKD 170 (377)
T ss_dssp HHHHHHHSHHHHHHHHHHT-------TCCBCCEEEECS-STHHHHHHH--HTCSSEEEEESSSC--CTTTTEEEECSTTS
T ss_pred HHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--HcCCCEEEEeCCCC--CCCCCeEEECCHHH
Confidence 8888999999999988765 477899988853 333333332 46799999997653 24577889999888
Q ss_pred cCCC-----CCceeEEEeeeccceEEEEEEE
Q 023408 188 LKKL-----EPPLVLQEFVNHGGVLFKVYIV 213 (282)
Q Consensus 188 L~~L-----~~P~VlQEFINH~gvLfKVYVI 213 (282)
|... ..++++||||+ +..=|-|.++
T Consensus 171 l~~a~~~~~~~~~ivEe~i~-g~~E~sv~~~ 200 (377)
T 3orq_A 171 LQEGFKLIETSECVAEKYLN-IKKEVSLTVT 200 (377)
T ss_dssp HHHHHHHHTTSCEEEEECCC-EEEEEEEEEE
T ss_pred HHHHHHhcCCCcEEEEccCC-CCEEEEEEEE
Confidence 7532 47999999998 3356677777
No 19
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.04 E-value=1e-05 Score=83.50 Aligned_cols=149 Identities=14% Similarity=0.156 Sum_probs=105.4
Q ss_pred HHHhHHHhcCcEEEEecCCCCCCCC---CCceEEEeccCChHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHH
Q 023408 48 KLEGLARNKGILFVAIDQNRPLSDQ---GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVA 124 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~~Q---gpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~ 124 (282)
.++..|+++|++++.||.+.++-.. ..+|++.. -.+.-.++..++...-|+..+.+.+.
T Consensus 432 ~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~------------------g~itg~~~~~a~~~~~DK~~tk~lL~ 493 (750)
T 3ln6_A 432 LLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKN------------------GNMTSKDNYIVPLAMANKVVTKKILD 493 (750)
T ss_dssp HHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEET------------------TTBCTTSCTHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEec------------------CCeeCCCHHHHHHHHhCHHHHHHHHH
Confidence 4667899999999999998776532 24454432 12345567778887789999999888
Q ss_pred hccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEe---ccCccCC-------CCCc
Q 023408 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY---DQYSLKK-------LEPP 194 (282)
Q Consensus 125 ~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf---~~~gL~~-------L~~P 194 (282)
+. .|.+|++.++.+ .++..+.+ ...+.||+|+||....| +..+.++. +.+.+.. ...+
T Consensus 494 ~~-------GIPvP~~~~~~~-~~ea~~~~-~~~~g~PvVVKP~~G~~---G~GV~iv~~~~s~eel~~a~~~~~~~~~~ 561 (750)
T 3ln6_A 494 EK-------HFPTPFGDEFTD-RKEALNYF-SQIQDKPIVVKPKSTNF---GLGISIFKTSANLASYEKAIDIAFTEDSA 561 (750)
T ss_dssp HT-------TCCCCCCCCEET-TTTHHHHH-HHSSSSCEEEEETTCCS---SSSCEEESSCCCHHHHHHHHHHHHHHCSE
T ss_pred HC-------CcCCCCEEEECC-HHHHHHHH-HHhcCCcEEEEeCCCCC---CCCEEEEeCCCCHHHHHHHHHHHHhhCCc
Confidence 64 477899988863 33333333 23578999999966544 55788887 5555431 2568
Q ss_pred eeEEEeeeccceEEEEEEEcceEEEEEecCCCCC
Q 023408 195 LVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDV 228 (282)
Q Consensus 195 ~VlQEFINH~gvLfKVYVIGd~v~vv~R~SLpN~ 228 (282)
+++||||. |.=|-|+|+||++.-+.+.--+++
T Consensus 562 vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~v 593 (750)
T 3ln6_A 562 ILVEEYIE--GTEYRFFVLEGDCIAVLLRVAANV 593 (750)
T ss_dssp EEEEECCC--SEEEEEEEETTEEEEEEEEECCEE
T ss_pred EEEEeccC--CCEEEEEEECCEEEEEEEEecceE
Confidence 99999998 789999999999976555444443
No 20
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=97.98 E-value=0.00028 Score=66.38 Aligned_cols=155 Identities=12% Similarity=0.158 Sum_probs=95.3
Q ss_pred HHhHHHhcCcEEEEecCCCC-CCCC-CCceEEEe-cc-CCh-HHHHHHHHHHHhCC-CeEE--e----------------
Q 023408 49 LEGLARNKGILFVAIDQNRP-LSDQ-GPFDIVLH-KL-TGK-EWRQILEEYRQTHP-EVTV--L---------------- 104 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~p-L~~Q-gpfDvILH-Kl-td~-~~~~~lq~y~~~hP-~v~V--I---------------- 104 (282)
+++.|++.|+..+-+|-+.. ...+ .-.|-.++ -. .|. .+.+.+.+..++++ +.++ -
T Consensus 20 i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~~~e~~~~~~a~l~e~lgl 99 (425)
T 3vot_A 20 IFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMTLFEPALPFTAKAAEALNL 99 (425)
T ss_dssp HHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEECCCGGGHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEECCchhHHHHHHHHHHcCC
Confidence 55778999999999876432 2223 23454333 22 233 34555555555443 2221 1
Q ss_pred --CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEE
Q 023408 105 --DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (282)
Q Consensus 105 --DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maiv 182 (282)
-++++++...|+..|-+.+++. .|.+|++..+++. ++ +..+.+.||+|+||.... .|..+.++
T Consensus 100 pg~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~----~~~~~~g~P~vvKp~~g~---gs~Gv~~v 164 (425)
T 3vot_A 100 PGLPFTTMENCRNKNKTRSILQQN-------GLNTPVFHEFHTL-AD----LENRKLSYPLVVKPVNGF---SSQGVVRV 164 (425)
T ss_dssp SSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESSG-GG----GTTCCCCSSEEEEESCC--------CEEE
T ss_pred CCCCHHHHHHhhCHHHHHHHHHHC-------CCCCCceeccCcH-HH----HHHhhcCCcEEEEECCCC---CCCCceEe
Confidence 2567888999999999988864 4678999998632 22 334679999999997654 46788999
Q ss_pred eccCccCC------------------CCCceeEEEeeeccceEEEEEEEcceEE
Q 023408 183 YDQYSLKK------------------LEPPLVLQEFVNHGGVLFKVYIVGEAIK 218 (282)
Q Consensus 183 f~~~gL~~------------------L~~P~VlQEFINH~gvLfKVYVIGd~v~ 218 (282)
.+++.|.+ -..++++||||+-.-+-.=+++.+..+.
T Consensus 165 ~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~e~sv~~~~~~g~~~ 218 (425)
T 3vot_A 165 DDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDGPEFAIETLSIQGNVH 218 (425)
T ss_dssp CSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCSCEEEEEEEEETTEEE
T ss_pred chHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecCcEEEEEEEEeCCcEE
Confidence 99877642 2468999999974322223344444443
No 21
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=97.97 E-value=3.7e-05 Score=70.96 Aligned_cols=149 Identities=14% Similarity=0.140 Sum_probs=93.3
Q ss_pred HHhHHHhcCcEEEEecCCCCCC-CC-------------------CCceEEEeccCChHHHHHHHHHHHhCCCeEEeCchh
Q 023408 49 LEGLARNKGILFVAIDQNRPLS-DQ-------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPY 108 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL~-~Q-------------------gpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~ 108 (282)
+...+++.|+..+-+|.+..-. .+ ..+|+|+-=..+.. ...++.+.+.. .+--+++
T Consensus 14 ~~~a~~~~G~~v~~~~~~~~~~~~~~a~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~~-~~~~~~l~~~g---~~g~~~~ 89 (369)
T 3aw8_A 14 LALAGYPLGLSFRFLDPSPEACAGQVGELVVGEFLDEGALLRFAEGLALVTYEFENVP-VEAARRLEGRL---PLYPPAK 89 (369)
T ss_dssp HHHHHTTBTCCEEEEESCTTCGGGGTSEEEECCTTCHHHHHHHHTTCSEEEECCTTCC-HHHHHHHHHHS---CBSSCHH
T ss_pred HHHHHHHcCCEEEEEeCCCCChHHHhhceEecCCCCHHHHHHHHhCCCEEEECCCCcC-HHHHHHHHHcC---CcCCCHH
Confidence 4445677888888888653210 01 23566543222211 22222222222 5667889
Q ss_pred HHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeecccc-CCCCceeEEEEeccCc
Q 023408 109 AIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD-GSAKSHELSLAYDQYS 187 (282)
Q Consensus 109 ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~-Gsa~SH~Maivf~~~g 187 (282)
+++...|+..+.+.+++. .|.+|++..+++ .+++.+. ...+.||+|+||.... | +..+.++.+++.
T Consensus 90 ~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~--~~~~g~P~vvKp~~~~~~---g~Gv~~v~~~~e 156 (369)
T 3aw8_A 90 ALEVAQDRLREKTFFQGL-------GVPTPPFHPVDG-PEDLEEG--LKRVGLPALLKTRRGGYD---GKGQALVRTEEE 156 (369)
T ss_dssp HHHHHTCHHHHHHHHHHH-------TCCCCCEEEESS-HHHHHHH--HTTTCSSEEEEECCC---------EEEECSHHH
T ss_pred HHHHhcCHHHHHHHHHHC-------CCCCCCceeeCC-HHHHHHH--HHHcCCCEEEEEcCCCCC---cceEEEECCHHH
Confidence 999999999999988875 467899988852 2222222 2357899999999876 6 456788888776
Q ss_pred cC----CC-CCceeEEEeeeccceEEEEEEEcc
Q 023408 188 LK----KL-EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 188 L~----~L-~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
|. .+ ..++++||||.. |.-|-|.+++|
T Consensus 157 l~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d 188 (369)
T 3aw8_A 157 ALEALKALGGRGLILEGFVPF-DREVSLLAVRG 188 (369)
T ss_dssp HHHHHTTTCSSSEEEEECCCC-SEEEEEEEEEC
T ss_pred HHHHHHhcCCCcEEEEEcCCC-CEEEEEEEEEC
Confidence 64 23 468999999986 67778888875
No 22
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=97.94 E-value=2.6e-05 Score=71.71 Aligned_cols=147 Identities=18% Similarity=0.219 Sum_probs=78.9
Q ss_pred HHHhHHHhcCcEEEEecCCCCCC-----CC-----------CCceEEEeccCChHHHHHHHHHHHhCCCeEEeCchhHHh
Q 023408 48 KLEGLARNKGILFVAIDQNRPLS-----DQ-----------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQ 111 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~-----~Q-----------gpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~ai~ 111 (282)
.+...+++.|+..+.+|.+.... +. ..+|+|+--..+... ..+ ++.+. .+.-++++++
T Consensus 15 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~v~~~~e~~~~-~~~-~~l~~----~~g~~~~~~~ 88 (365)
T 2z04_A 15 MTILEGRKLGFKFHVLEDKENAPACRVADRCFRTGQISEFVDSCDIITYEFEHIKD-EVL-EKCES----KLIPNPQALY 88 (365)
T ss_dssp HHHHHHGGGTCEEEEECSSSSCHHHHHSSEEECGGGHHHHHHHCSEEEESSSCCCH-HHH-HHHTT----TBSSCTHHHH
T ss_pred HHHHHHHHCCCEEEEEeCCCCCchhhhccceeeHHHHHHHhhcCCEEEECCCCCcH-HHH-HHHhh----hcCCCHHHHH
Confidence 45667788999999999864321 10 136777754433222 222 23322 5667789999
Q ss_pred hhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeecccc-CCCCceeEEEEeccCccCC
Q 023408 112 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD-GSAKSHELSLAYDQYSLKK 190 (282)
Q Consensus 112 ~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~-Gsa~SH~Maivf~~~gL~~ 190 (282)
...|+..+.+.+++. .+.+|++..++ .+++.+.+ ..+.||+|+||.... |+ ..+.++.+++.|..
T Consensus 89 ~~~dK~~~~~~l~~~-------gip~p~~~~~~--~~~~~~~~--~~~~~P~vvKp~~~~~~g---~Gv~~v~~~~el~~ 154 (365)
T 2z04_A 89 VKKSRIREKLFLKKH-------GFPVPEFLVIK--RDEIIDAL--KSFKLPVVIKAEKLGYDG---KGQYRIKKLEDANQ 154 (365)
T ss_dssp HHTCHHHHHHHHHTT-------TCCCCCEEEC------------------CEEEECC-----------------------
T ss_pred HhhCHHHHHHHHHHc-------CCCCCCEEEEc--HHHHHHHH--HhcCCCEEEEEcCCCcCC---CCeEEECCHHHHHH
Confidence 999999999988764 46789998875 22322222 246799999999876 64 46778888777653
Q ss_pred C------CCceeEEEeeeccceEEEEEEEcc
Q 023408 191 L------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 191 L------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
. ..++++||||.. |.-|-|.+++|
T Consensus 155 ~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d 184 (365)
T 2z04_A 155 VVKNHDKEESFIIEEFVKF-EAEISCIGVRD 184 (365)
T ss_dssp ----------CEEEECCCC-SEEEEEEEEEC
T ss_pred HHHHhccCCCEEEEccCCC-CEEEEEEEEEC
Confidence 2 368999999986 66788888864
No 23
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=97.93 E-value=3.8e-05 Score=70.57 Aligned_cols=100 Identities=14% Similarity=0.207 Sum_probs=78.0
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCcee
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~ 178 (282)
++.++ -++.++...+|+..+.+.+++. .+.+|+++.++... +.. ...+.||+|+||....|+ ..
T Consensus 116 gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~-~~~----~~~~~~PvvvKP~~~~~s---~G 180 (343)
T 1e4e_A 116 GIPFVGCDIQSSAICMDKSLTYIVAKNA-------GIATPAFWVINKDD-RPV----AATFTYPVFVKPARSGSS---FG 180 (343)
T ss_dssp TCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEECTTC-CCC----GGGSCSCEEEEESSCCTT---TT
T ss_pred CCCccCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCEEEEechh-hhh----hhccCCCEEEEeCCCCCC---CC
Confidence 56666 4588999999999999998874 36789999986432 221 145789999999997764 46
Q ss_pred EEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEEcce
Q 023408 179 LSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 179 Maivf~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
+.+|.+++.|.. ...++++||||. |.-|-|.|+|+.
T Consensus 181 v~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~ 223 (343)
T 1e4e_A 181 VKKVNSADELDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNS 223 (343)
T ss_dssp CEEECSGGGHHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEET
T ss_pred EEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC--CeEEEEEEEeCC
Confidence 788999888752 357999999998 789999999875
No 24
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.91 E-value=7.3e-05 Score=67.42 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=57.8
Q ss_pred CeE-EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCcee
Q 023408 100 EVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (282)
Q Consensus 100 ~v~-VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~ 178 (282)
.+. +.-++++++...|+..+.+.+++. .+.+|+++... +++.+.+....+.||+|+||....| +..
T Consensus 98 g~~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~---~~~~~~~~~~~~~~P~vvKp~~g~g---~~g 164 (331)
T 2pn1_A 98 GVTVIVSPYAACELCFDKYTMYEYCLRQ-------GIAHARTYATM---ASFEEALAAGEVQLPVFVKPRNGSA---SIE 164 (331)
T ss_dssp TCEECCCCHHHHHHHHBHHHHHHHHHHH-------TCCCCCEESSH---HHHHHHHHTTSSCSCEEEEESBC--------
T ss_pred CcEEecCCHHHHHHhhCHHHHHHHHHHc-------CCCCCcEEecH---HHhhhhhhcccCCCCEEEEeCCCCC---CCC
Confidence 453 456788999999999999988875 36678875421 1222222224688999999988766 567
Q ss_pred EEEEeccCccCCC---CCceeEEEeeeccceEEEEEEEcc
Q 023408 179 LSLAYDQYSLKKL---EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 179 Maivf~~~gL~~L---~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
+.++.+++.|... ..++++||||.. .-|-|.+++|
T Consensus 165 v~~v~~~~el~~~~~~~~~~lvee~i~G--~e~~v~~~~d 202 (331)
T 2pn1_A 165 VRRVETVEEVEQLFSKNTDLIVQELLVG--QELGVDAYVD 202 (331)
T ss_dssp ------------------CEEEEECCCS--EEEEEEEEEC
T ss_pred eEEeCCHHHHHHHHHhCCCeEEEecCCC--cEEEEEEEEe
Confidence 8888888877643 369999999983 6777777753
No 25
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=97.88 E-value=0.00028 Score=64.89 Aligned_cols=140 Identities=21% Similarity=0.271 Sum_probs=89.9
Q ss_pred HHHhHHHhcCcEEEEecCCCCCCCC----------------------CCceEEEeccCChHHHHHHHHHHHhCCCeEEeC
Q 023408 48 KLEGLARNKGILFVAIDQNRPLSDQ----------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLD 105 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~~Q----------------------gpfDvILHKltd~~~~~~lq~y~~~hP~v~VID 105 (282)
.+...|++.|+..+-+|.+..-... ..+|+|+==..+........ ...+.-.+++.-
T Consensus 15 ~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~-~~~~~~~~~~g~ 93 (363)
T 4ffl_A 15 EAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNENLACIEFLN-SIKEKFSCPVLF 93 (363)
T ss_dssp HHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCCHHHHHHHH-HHGGGCSSCBCC
T ss_pred HHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCChhHHHHHH-HHHHHCCCccCC
Confidence 3556789999999999976532211 12343332211111222223 333334566777
Q ss_pred chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEecc
Q 023408 106 PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185 (282)
Q Consensus 106 P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~ 185 (282)
++++++...||..+-+.+++.. +.+|.+. .+.||+|+||....| +..|.++.++
T Consensus 94 ~~~a~~~~~dK~~~k~~l~~~g-------ip~~~~~----------------~ig~P~vvKp~~g~g---~~gv~~v~~~ 147 (363)
T 4ffl_A 94 DFEAYRISRDKKKSKDYFKSIG-------VPTPQDR----------------PSKPPYFVKPPCESS---SVGARIIYDD 147 (363)
T ss_dssp CHHHHHHHTSHHHHHHHHHHTT-------CCCCCBS----------------CSSSCEEEECSSCCT---TTTCEEEC--
T ss_pred CHHHHHHhhCHHHHHHHHHhcC-------CCCCCce----------------ecCCCEEEEECCCCC---CcCeEEeccH
Confidence 8899999999999999988753 3445431 357999999976554 6778899999
Q ss_pred CccCCCCCceeEEEeeeccceEEEEEEEcce
Q 023408 186 YSLKKLEPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 186 ~gL~~L~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
+.+.....++++||||. |.-|=|.+++|.
T Consensus 148 ~~~~~~~~~~~~ee~i~--g~e~sv~~~~d~ 176 (363)
T 4ffl_A 148 KDLEGLEPDTLVEEYVE--GEVVSLEVVGDG 176 (363)
T ss_dssp ----CCCTTCEEEECCC--SEEEEEEEEEES
T ss_pred HHhhhhccchhhhhhcc--CcEEEEEEEEEC
Confidence 99999999999999996 566777777654
No 26
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=97.86 E-value=6.6e-05 Score=71.26 Aligned_cols=174 Identities=13% Similarity=0.138 Sum_probs=108.7
Q ss_pred EEEEEEe---chhhhhccchhH-HHhHHHhcCcEEEEecCCCC------------------CCCC---------------
Q 023408 30 VVVGYAL---TSKKTKSFLQPK-LEGLARNKGILFVAIDQNRP------------------LSDQ--------------- 72 (282)
Q Consensus 30 ~~VGy~l---~~KK~~sf~~~~-l~~~~~~~Gi~fV~ID~~~p------------------L~~Q--------------- 72 (282)
.+|+..+ |.-+.=|+..-. +....++.|++.++||.++. +...
T Consensus 38 ~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (383)
T 3k3p_A 38 ETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSDIY 117 (383)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGGGC
T ss_pred CeEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEecccccccccccccccccccccccccccccccc
Confidence 3577765 333333333322 33455678999999998753 0010
Q ss_pred CCceEEEeccCChHH-HHHHHHHHHhCCCeEEeC-chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC--
Q 023408 73 GPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-- 148 (282)
Q Consensus 73 gpfDvILHKltd~~~-~~~lq~y~~~hP~v~VID-P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~-- 148 (282)
..+|+++-=+-+..- ...+|.+.+.. +++++- ++.++...+|+..+.+.+++.. .|.+|+++.++....
T Consensus 118 ~~~D~vf~~lhG~~GEdg~iq~lle~~-gipy~G~~~~a~~~~~DK~~~k~~l~~~G------~Ipvp~~~~~~~~~~~~ 190 (383)
T 3k3p_A 118 EEEAVVFPVLHGPMGEDGSIQGFLEVL-KMPYVGTNILSSSVAMDKITTNQVLESAT------TIPQVAYVALIEGEPLE 190 (383)
T ss_dssp CTTCEEEEECCSTTTSSSHHHHHHHHT-TCCBSSCCHHHHHHHHCHHHHHHHHHHHC------CCCBCCEEEEETTSCHH
T ss_pred cCCCEEEEcCCCCCcchHHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHhCC------CcCCCCEEEEeCccchh
Confidence 147877655543210 01234444443 566664 5788999999999999988752 177899999864321
Q ss_pred CchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEEcce
Q 023408 149 SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 149 ~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
+..... ...+.||+|+||....| |..+.++.+++.|.. ...++++||||+ |.=|-|.|+||.
T Consensus 191 ~~~~~~-~~~lg~PvvVKP~~ggs---s~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~d~ 259 (383)
T 3k3p_A 191 SKLAEV-EEKLIYPVFVKPANMGS---SVGISKAENRTDLKQAIALALKYDSRVLIEQGVD--AREIEVGILGNT 259 (383)
T ss_dssp HHHHHH-HHHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESS
T ss_pred HHHHHH-HHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEeCC
Confidence 111121 24588999999988765 667788999887752 256899999998 788999999974
No 27
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=97.82 E-value=7.3e-05 Score=69.78 Aligned_cols=126 Identities=14% Similarity=0.273 Sum_probs=87.8
Q ss_pred CceEEEeccC---ChHHHHHHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC--
Q 023408 74 PFDIVLHKLT---GKEWRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-- 147 (282)
Q Consensus 74 pfDvILHKlt---d~~~~~~lq~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~-- 147 (282)
.+|+|+-=+. +++ ..+|.+.+.. ++.++-| +.++...+|+..+.+.+++. .|.+|+++.++...
T Consensus 98 ~~D~vf~~lhG~~gEd--g~iq~~le~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~ 167 (364)
T 3i12_A 98 TVDVIFPIVHGTLGED--GSLQGMLRVA-NLPFVGSDVLSSAACMDKDVAKRLLRDA-------GLNIAPFITLTRTNRH 167 (364)
T ss_dssp CCSEEEECCCSTTTTS--SHHHHHHHHT-TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEEETTTGG
T ss_pred CCCEEEEeCCCCCCcC--HHHHHHHHHc-CCCccCCCHHHHHHHHCHHHHHHHHHHC-------CCCCCCEEEEEccccc
Confidence 5787764443 332 1244444443 6666654 78999999999999998864 47789999986432
Q ss_pred -CCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEEcce
Q 023408 148 -SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 148 -~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
.++.+.. ..+.||+|+||....| |..+.++.+++.|.. ...++++||||. |.=|=|.|+||.
T Consensus 168 ~~~~~~~~--~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 237 (364)
T 3i12_A 168 AFSFAEVE--SRLGLPLFVKPANQGS---SVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK--GREIECAVLGND 237 (364)
T ss_dssp GCCHHHHH--HHHCSSEEEEETTCCT---TTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESS
T ss_pred hhhHHHHH--HhcCCCEEEEECCCCC---CcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC--CeEEEEEEEeCC
Confidence 1322222 3467999999997655 466778988877752 256899999998 477888999875
No 28
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=97.82 E-value=0.00015 Score=68.73 Aligned_cols=128 Identities=16% Similarity=0.246 Sum_probs=88.5
Q ss_pred CceEEEeccCChHHH-HHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC---C
Q 023408 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA---S 148 (282)
Q Consensus 74 pfDvILHKltd~~~~-~~lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~---~ 148 (282)
.+|+|+-=+.+..-. ..+|.+.+.. ++.++ -++.++...+|+..+.+.+++. .|.+|+++.++... .
T Consensus 117 ~~D~vf~~lhG~~gEdg~iq~lle~~-gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 188 (386)
T 3e5n_A 117 QIDVVFPIVHGTLGEDGSLQGLLRMA-NLPFVGSGVLGSAVAMDKDMAKRVLRDA-------RLAVAPFVCFDRHTAAHA 188 (386)
T ss_dssp CCSEEEEEECSHHHHSSHHHHHHHHT-TCCBSSCCHHHHHHHHBHHHHHHHHHHT-------TCCBCCEEEEEHHHHTTC
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEEEeCcccchh
Confidence 577766555443111 1344444443 56655 4568999999999999998864 47789999886321 1
Q ss_pred CchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEEcce
Q 023408 149 SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 149 ~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
++.+.. ..+.||+|+||....|+ -.+.+|.+++.|.. ...++++||||. |.=|=|.|+||.
T Consensus 189 ~~~~~~--~~lg~PvvVKP~~ggss---~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 256 (386)
T 3e5n_A 189 DVDTLI--AQLGLPLFVKPANQGSS---VGVSQVRTADAFAAALALALAYDHKVLVEAAVA--GREIECAVLGNA 256 (386)
T ss_dssp CHHHHH--HHHCSSEEEEESBSCSS---TTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEECSS
T ss_pred hHHHHH--HhcCCCEEEEECCCCcC---CCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC--CeEEEEEEEeCC
Confidence 222222 34689999999987764 56678999888752 256899999998 588889999885
No 29
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=97.82 E-value=4.6e-05 Score=71.78 Aligned_cols=126 Identities=16% Similarity=0.170 Sum_probs=89.1
Q ss_pred CceEEEeccCC---hHHHHHHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCC
Q 023408 74 PFDIVLHKLTG---KEWRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS 149 (282)
Q Consensus 74 pfDvILHKltd---~~~~~~lq~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~ 149 (282)
.+|+|+-=+.+ ++ ..+|.+.+.. ++.++-| +.++...+|+..+.+.+++. .|.+|+++.++.....
T Consensus 109 ~~D~vfp~lhG~~gEd--g~iq~lle~~-gip~vG~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~ 178 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGED--GTIQGLLELA-GVPYVGAGVLASAVGMDKEFTKKLLAAD-------GLPVGAYAVLRPPRST 178 (373)
T ss_dssp TCSEEEECCEETTEEC--CHHHHHHHHH-TCCBSSSCHHHHHHHHBHHHHHHHHHHT-------TCCBCCEEEECTTCCC
T ss_pred CccEEEECCCCCCCcc--HHHHHHHHHc-CCCccCCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEEECcccc
Confidence 46776554422 21 1223333332 5777766 78999999999999998874 4778999999643321
Q ss_pred -chHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEEcce
Q 023408 150 -IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 150 -~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
..+. ...+.||+|+||....| |..+.+|.+++.|.. ...++++||||. |.=|-|.|+|+.
T Consensus 179 ~~~~~--~~~lg~PvvVKP~~ggs---s~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 246 (373)
T 3lwb_A 179 LHRQE--CERLGLPVFVKPARGGS---SIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS--GRELECGVLEMP 246 (373)
T ss_dssp CCHHH--HHHHCSCEEEEESBCST---TTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE--EEEEEEEEEECT
T ss_pred hhHHH--HHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC--CeEEEEEEEECC
Confidence 1222 34578999999988776 456778999888752 357899999999 788999999874
No 30
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=97.81 E-value=9.8e-05 Score=68.25 Aligned_cols=152 Identities=11% Similarity=0.161 Sum_probs=93.6
Q ss_pred hHHHhHHHhcCcEEEEecCCCCCCCC-----------------------CCceEEEeccCChHHHHHHHHHHHhCCCeEE
Q 023408 47 PKLEGLARNKGILFVAIDQNRPLSDQ-----------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (282)
Q Consensus 47 ~~l~~~~~~~Gi~fV~ID~~~pL~~Q-----------------------gpfDvILHKltd~~~~~~lq~y~~~hP~v~V 103 (282)
..+...+++.|+..+.+|.+...... ..+|+|+-=.-+. ..+.+ +..++. .+.+
T Consensus 24 ~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e~~-~~~~~-~~l~~~-gi~~ 100 (391)
T 1kjq_A 24 KEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAI-ATDML-IQLEEE-GLNV 100 (391)
T ss_dssp HHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSCS-CHHHH-HHHHHT-TCEE
T ss_pred HHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECCCcC-CHHHH-HHHHhC-CCCc
Confidence 34566778899999999975321100 1345444322111 11112 222232 4456
Q ss_pred eCchhHHhhhcCHHHHHHHH-HhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEE
Q 023408 104 LDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (282)
Q Consensus 104 IDP~~ai~~L~nR~~ml~~l-~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maiv 182 (282)
.-++++++...||..+.+.+ ++. .|.+|++..+++ .+++.+.+. .+.||+|+||.... .+..+.++
T Consensus 101 ~~~~~~~~~~~dK~~~~~~l~~~~-------gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~g~---gg~Gv~~v 167 (391)
T 1kjq_A 101 VPCARATKLTMNREGIRRLAAEEL-------QLPTSTYRFADS-ESLFREAVA--DIGYPCIVKPVMSS---SGKGQTFI 167 (391)
T ss_dssp SSCHHHHHHHHSHHHHHHHHHTTS-------CCCBCCEEEESS-HHHHHHHHH--HHCSSEEEEESCC------CCCEEE
T ss_pred CCCHHHHHHhhCHHHHHHHHHHhC-------CCCCCCeeeeCC-HHHHHHHHH--hcCCCEEEEeCCCC---CCCCeEEE
Confidence 67789999999999988887 543 467899988852 222222222 36799999998654 46678899
Q ss_pred eccCccCC-----------CCCceeEEEeeeccceEEEEEEEcc
Q 023408 183 YDQYSLKK-----------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 183 f~~~gL~~-----------L~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
.+++.|.. -..++++||||.. |.=|-|.++++
T Consensus 168 ~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~ 210 (391)
T 1kjq_A 168 RSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DFEITLLTVSA 210 (391)
T ss_dssp CSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-SEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-CeEEEEEEEEe
Confidence 99887652 1468999999985 45566666643
No 31
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=97.81 E-value=0.00013 Score=69.67 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=95.9
Q ss_pred hhHHHhHHHhcCcEEEEecCCCCC-----CCC---C-------------CceEEEeccCChHHHHHHHHHHHhCCCeEEe
Q 023408 46 QPKLEGLARNKGILFVAIDQNRPL-----SDQ---G-------------PFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (282)
Q Consensus 46 ~~~l~~~~~~~Gi~fV~ID~~~pL-----~~Q---g-------------pfDvILHKltd~~~~~~lq~y~~~hP~v~VI 104 (282)
...+...|++.|+.++-+|.+..- .+. + ..|+|+--. +.....+-++.+++ ..+.
T Consensus 47 g~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~~~--e~~~~~~~~~l~~~--~~vg 122 (419)
T 4e4t_A 47 GRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTEF--ENVPAASLDFLART--TFVA 122 (419)
T ss_dssp HHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEECC--TTCCHHHHHHHHTT--SEES
T ss_pred HHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEEcc--CcCCHHHHHHHHcc--CCcC
Confidence 344666788999999999865321 000 1 245555111 11112222333444 4778
Q ss_pred CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHh--cCCccceEeeeccccCCCCceeEEEE
Q 023408 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLK--AGLTLPLVAKPLVADGSAKSHELSLA 182 (282)
Q Consensus 105 DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~--agL~fPlI~KPlvA~Gsa~SH~Maiv 182 (282)
-++++++...||..+-+.++++ .|.+|++..+++ .+++.+...+ ..+ ||+|+||.. .| ..+..+.++
T Consensus 123 p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~~-~~e~~~~~~~~~~~~-~P~VvKp~~-~g-~~G~Gv~~v 191 (419)
T 4e4t_A 123 PAGRCVAVAQDRIAEKRFIEAS-------GVPVAPHVVIES-AAALAALDDAALDAV-LPGILKTAR-LG-YDGKGQVRV 191 (419)
T ss_dssp SCHHHHHHHTCHHHHHHHHHHT-------TCCBCCEEEECS-HHHHHTSCHHHHHTT-CSEEEEESS-SC-CTTTTEEEE
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CcCCCCeEEECC-HHHHHHHHHhhcccc-CCEEEEecC-CC-CCCCceEEE
Confidence 8899999999999999998875 477899998853 1111111111 117 999999962 22 346788999
Q ss_pred eccCccCC----C-CCceeEEEeeeccceEEEEEEEc
Q 023408 183 YDQYSLKK----L-EPPLVLQEFVNHGGVLFKVYIVG 214 (282)
Q Consensus 183 f~~~gL~~----L-~~P~VlQEFINH~gvLfKVYVIG 214 (282)
.+++.|.. + ..++++||||+. +.=+=|.+++
T Consensus 192 ~~~~el~~a~~~~~~~~~lvEe~i~~-~~Eisv~v~~ 227 (419)
T 4e4t_A 192 STAREARDAHAALGGVPCVLEKRLPL-KYEVSALIAR 227 (419)
T ss_dssp CSHHHHHHHHHHTTTCCEEEEECCCE-EEEEEEEEEE
T ss_pred CCHHHHHHHHHhcCCCcEEEeecCCC-CeEEEEEEEE
Confidence 99887753 2 469999999986 4445566664
No 32
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=97.81 E-value=0.00013 Score=66.70 Aligned_cols=123 Identities=17% Similarity=0.182 Sum_probs=87.9
Q ss_pred CCCceEEEeccCC---h--HHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEcc
Q 023408 72 QGPFDIVLHKLTG---K--EWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIER 145 (282)
Q Consensus 72 QgpfDvILHKltd---~--~~~~~lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~ 145 (282)
...+|+|+--+.+ + .....++.+ ++.++ -+++++...+|+..+.+.+++. .+.+|+++.++.
T Consensus 74 ~~~~D~v~~~~hg~~gedg~i~~~le~~-----gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~ 141 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGEDGTVQGFLELL-----GKPYVGAGVAASALCMDKDLSKRVLAQA-------GVPVVPWVAVRK 141 (322)
T ss_dssp CTTCSEEEEECCSTTTTSSHHHHHHHHH-----TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEET
T ss_pred ccCCCEEEEeCCCCCCccHHHHHHHHHc-----CCCeeCcCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEEC
Confidence 3468998866543 2 122223332 56666 4489999999999999998864 467899998864
Q ss_pred CCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEEcce
Q 023408 146 DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 146 d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
...+ .+ .+.||+|+||....|+ ..+.++.+++.|.. ...++++||||. |..-|-|.|+|+.
T Consensus 142 ~~~~---~~---~~g~PvvvKP~~g~~s---~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~~E~~v~vl~~~ 209 (322)
T 2fb9_A 142 GEPP---VV---PFDPPFFVKPANTGSS---VGISRVERFQDLEAALALAFRYDEKAVVEKALS-PVRELEVGVLGNV 209 (322)
T ss_dssp TSCC---CC---CSCSCEEEEETTCCTT---TTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS-SCEEEEEEEESSS
T ss_pred chhh---hh---ccCCCEEEEeCCCCCC---CCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC-CCeeEEEEEEeCC
Confidence 3221 11 6789999999987764 56788988877652 357899999997 2278999999984
No 33
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=97.79 E-value=0.00011 Score=69.34 Aligned_cols=129 Identities=9% Similarity=0.068 Sum_probs=87.9
Q ss_pred CceEEEeccCChHH-HHHHHHHHHhCCCeEEeC-chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC--C
Q 023408 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS--S 149 (282)
Q Consensus 74 pfDvILHKltd~~~-~~~lq~y~~~hP~v~VID-P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~--~ 149 (282)
.+|+|+-=+.+..- ...+|.+.+.. ++.++= ++.++...+|+..+.+.+++. .|.+|+++.++.... .
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~~-gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 169 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLELL-NLPYVGANVQSSAVCMEKDLTKTVLRAG-------GIPVVDWHTLSPRDATEG 169 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHHT-TCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCCCEEECTTSCCTT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHHc-CCCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEechhhhhh
Confidence 58888765544310 01244444443 676664 467899999999999998875 477899999864321 1
Q ss_pred chHHHHhcCCccc-eEeeeccccCCCCceeEEEEeccCccC-------CCCCceeEEEeeeccceEEEEEEEcce
Q 023408 150 IPDVVLKAGLTLP-LVAKPLVADGSAKSHELSLAYDQYSLK-------KLEPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 150 ~~~~l~~agL~fP-lI~KPlvA~Gsa~SH~Maivf~~~gL~-------~L~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
..+.. ...+.|| +|+||....| |..+.+|.+++.|. ....++++||||. |.=|-|.|+||.
T Consensus 170 ~~~~~-~~~lg~P~vvVKP~~ggs---s~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 238 (372)
T 3tqt_A 170 VYQRL-LDRWGTSELFVKAVSLGS---SVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR--GREIECAVLGNG 238 (372)
T ss_dssp HHHHH-HHHC---CEEEEESSCCS---GGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--SEEEEEEEEESS
T ss_pred HHHHH-HHhcCCCeEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC--CEEEEEEEEeCC
Confidence 12222 2458899 9999987654 67789999988775 2357999999998 688999999986
No 34
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=97.71 E-value=0.00042 Score=65.26 Aligned_cols=147 Identities=10% Similarity=0.007 Sum_probs=94.7
Q ss_pred HHHhHHHhcCcEEEEecCCCCCCCCC-CceEEEeccCCh--HHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHH
Q 023408 48 KLEGLARNKGILFVAIDQNRPLSDQG-PFDIVLHKLTGK--EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVA 124 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~~Qg-pfDvILHKltd~--~~~~~lq~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~ 124 (282)
-+...|++.|+.++..|.+.|-.-.+ ..|+|.--.... ...+.+++ .. .|.-++++++...||..+-+.++
T Consensus 15 m~~~aa~~lG~~v~~~~~~a~~~~~~l~~d~it~e~e~v~~~~l~~l~~---~~---~v~p~~~a~~~~~DK~~~k~~l~ 88 (355)
T 3eth_A 15 MLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRQLA---RH---PAFVNRDVFPIIADRLTQKQLFD 88 (355)
T ss_dssp HHHHHHGGGTCEEEEECTTCCGGGCCCTTSEEEESCSCCCCCHHHHHHH---TC---TTBTTTTHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHCCCEEECCCCCCCceEEcccCCEEEECcCCcCHHHHHHHHh---cC---CcCCCHHHHHHhcCHHHHHHHHH
Confidence 35556788899993333332210011 456665544322 22333332 32 57788999999999999999988
Q ss_pred hccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEec--cCccCC--CCCceeEEEe
Q 023408 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD--QYSLKK--LEPPLVLQEF 200 (282)
Q Consensus 125 ~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~--~~gL~~--L~~P~VlQEF 200 (282)
++ .|.+|++..+++ .+++.+... .+.||+|+||... |+ .++.+.+|.+ ++.|.. +. ++++|+|
T Consensus 89 ~~-------GIptp~~~~v~~-~~e~~~~~~--~~G~P~VvKp~~~-G~-~GkGv~~v~~~~~~el~~a~~~-~vivEe~ 155 (355)
T 3eth_A 89 KL-------HLPTAPWQLLAE-RSEWPAVFD--RLGELAIVKRRTG-GY-DGRGQWRLRANETEQLPAECYG-ECIVEQG 155 (355)
T ss_dssp HT-------TCCBCCEEEECC-GGGHHHHHH--HHCSEEEEEESSS-CC-TTTTEEEEETTCGGGSCGGGTT-TEEEEEC
T ss_pred HC-------ccCCCCEEEECC-HHHHHHHHH--HcCCCEEEEecCC-CC-CCCeEEEEcCCCHHHHHHHhhC-CEEEEEc
Confidence 75 477899988853 333333333 4679999999863 22 4688999999 888764 34 7999999
Q ss_pred eeccceEEEEEEEc
Q 023408 201 VNHGGVLFKVYIVG 214 (282)
Q Consensus 201 INH~gvLfKVYVIG 214 (282)
|+.+ .=+=|-+++
T Consensus 156 I~~~-~Eisv~v~~ 168 (355)
T 3eth_A 156 INFS-GEVSLVGAR 168 (355)
T ss_dssp CCCS-EEEEEEEEE
T ss_pred cCCC-cEEEEEEEE
Confidence 9853 334455553
No 35
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=97.70 E-value=0.00027 Score=64.56 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=76.0
Q ss_pred CCceEEEeccCCh-HHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCch
Q 023408 73 GPFDIVLHKLTGK-EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (282)
Q Consensus 73 gpfDvILHKltd~-~~~~~lq~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~ 151 (282)
.++|+++-=.++. ...+.+.+..... ...+.-++++++...|+..+.+.+++ . +.+|+++.
T Consensus 68 ~~~D~~~~i~~~ed~~l~~~~~~l~~~-g~~~g~~~~~~~~~~dK~~~~~~l~~-G-------ip~p~~~~--------- 129 (305)
T 3df7_A 68 EKSDAFLIIAPEDDFLLYTLTKKAEKY-CENLGSSSRAIAVTSDKWELYKKLRG-E-------VQVPQTSL--------- 129 (305)
T ss_dssp TTCSEEEEECCCGGGHHHHHHHHHHTT-SEESSCCHHHHHHHTSHHHHHHHHTT-T-------SCCCCEES---------
T ss_pred HhcCEEEEEccCCcHHHHHHHHHHHhc-CCccCCCHHHHHHhcCHHHHHHHHHh-C-------CCCCCEec---------
Confidence 3677644433333 3444555555543 47889999999999999999998875 3 56788763
Q ss_pred HHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCCCCceeEEEeeeccceEEEEEEEcc
Q 023408 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 152 ~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..+.||+|+||....|+ ..+.++.+ ...++++||||. |.-|=|.++++
T Consensus 130 -----~~~~~P~vvKP~~g~gs---~Gv~~v~~------~~~~~lvEe~I~--G~e~sv~v~~g 177 (305)
T 3df7_A 130 -----RPLDCKFIIKPRTACAG---EGIGFSDE------VPDGHIAQEFIE--GINLSVSLAVG 177 (305)
T ss_dssp -----SCCSSSEEEEESSCC-------CBCCSS------CCTTEEEEECCC--SEEEEEEEEES
T ss_pred -----ccCCCCEEEEeCCCCCC---CCEEEEec------CCCCEEEEeccC--CcEEEEEEEeC
Confidence 25789999999987765 44445544 457999999999 67888888853
No 36
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=97.69 E-value=0.00011 Score=69.42 Aligned_cols=151 Identities=13% Similarity=0.145 Sum_probs=91.2
Q ss_pred hHHHhHHHhcCcEEEEecCCCCC--------------CC---------CCCceEEEeccCChHHHHHHHHHHHhCCCeEE
Q 023408 47 PKLEGLARNKGILFVAIDQNRPL--------------SD---------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (282)
Q Consensus 47 ~~l~~~~~~~Gi~fV~ID~~~pL--------------~~---------QgpfDvILHKltd~~~~~~lq~y~~~hP~v~V 103 (282)
..+...+++.|+.++.+|.+..- .+ +..+|+|+--.-+.. .+.+ +..++. .+.+
T Consensus 32 ~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~~~-~~~~-~~l~~~-gi~~ 108 (433)
T 2dwc_A 32 KEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAIN-LDAL-FEFEKD-GYFV 108 (433)
T ss_dssp HHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSCSC-HHHH-HHHHHT-TCCB
T ss_pred HHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECcccCC-HHHH-HHHHhc-CCee
Confidence 34566678899999999976321 00 124565554332211 1222 222332 3445
Q ss_pred eCchhHHhhhcCHHHHHHHH-HhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEE
Q 023408 104 LDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (282)
Q Consensus 104 IDP~~ai~~L~nR~~ml~~l-~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maiv 182 (282)
.-++++++...||..+.+.+ ++. .|.+|++..+++ .+++.+.+. .+.||+|+||.... .+..+.++
T Consensus 109 ~~~~~~~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~g~---gg~Gv~~v 175 (433)
T 2dwc_A 109 VPNARATWIAMHRERLRETLVKEA-------KVPTSRYMYATT-LDELYEACE--KIGYPCHTKAIMSS---SGKGSYFV 175 (433)
T ss_dssp SSCHHHHHHHHCHHHHHHHHHHTS-------CCCCCCEEEESS-HHHHHHHHH--HHCSSEEEEECCC---------EEE
T ss_pred CCCHHHHHHhhCHHHHHHHHHHhc-------CCCCCCeeEeCC-HHHHHHHHH--hcCCCEEEEECCCc---CCCCeEEE
Confidence 66789999999999998887 654 467899988852 222222222 36799999998544 46788899
Q ss_pred eccCccC----CC-------CCceeEEEeeeccceEEEEEEEc
Q 023408 183 YDQYSLK----KL-------EPPLVLQEFVNHGGVLFKVYIVG 214 (282)
Q Consensus 183 f~~~gL~----~L-------~~P~VlQEFINH~gvLfKVYVIG 214 (282)
.+++.|. .+ ..++++||||+. |.=|-|.+++
T Consensus 176 ~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~ 217 (433)
T 2dwc_A 176 KGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-DVEVTELAVR 217 (433)
T ss_dssp CSGGGHHHHHHC---------CCEEEEECCCC-SEEEEECCEE
T ss_pred CCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-CeeEEEEEEe
Confidence 9987764 22 368999999985 4556666653
No 37
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=97.63 E-value=0.00011 Score=76.01 Aligned_cols=154 Identities=13% Similarity=0.135 Sum_probs=104.9
Q ss_pred hhHHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCChHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHh
Q 023408 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVAD 125 (282)
Q Consensus 46 ~~~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~ 125 (282)
.+.++..|+++||+++.|+.+.++-.-|--|-+ +.+- ....+.-++..++...-|+..+.+.+.+
T Consensus 435 t~~Iv~~A~~~gid~~vlg~e~~l~~lg~~~~~-~~ig--------------~~~~t~~~s~~aa~~~~DK~~tk~lL~~ 499 (757)
T 3ln7_A 435 TQALLFDVIQKGIHTEILDENDQFLCLKYGDHI-EYVK--------------NGNMTSHDSYISPLIMENKVVTKKVLQK 499 (757)
T ss_dssp HHHHHHHHHHHTCEEEEEETTTTEEEEEETTEE-EEEE--------------TTTBCSSSBSHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEECCCHHHHHhcccccc-eeec--------------cCccCCCCHHHHHHHhcCHHHHHHHHHH
Confidence 335778999999999999988887543322211 1110 1123345677788887799999998886
Q ss_pred ccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEE----eccCccCC-------CCCc
Q 023408 126 MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA----YDQYSLKK-------LEPP 194 (282)
Q Consensus 126 l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maiv----f~~~gL~~-------L~~P 194 (282)
. .|.+|++.++.+ .++..+.+ ...+.||+|+||....| +..|.++ .+.+.|.. ...+
T Consensus 500 ~-------GIPvP~~~~~~~-~~ea~~~~-~~~~g~PvVVKP~~g~~---G~GV~iv~~~v~~~eel~~al~~a~~~~~~ 567 (757)
T 3ln7_A 500 A-------GFNVPQSVEFTS-LEKAVASY-ALFENRAVVIKPKSTNY---GLGITIFQQGVQNREDFAKALEIAFREDKE 567 (757)
T ss_dssp H-------TCCCCCEEEESC-HHHHHHGG-GGSSSSCEEEEESSCST---TTTCEECSSCCCCHHHHHHHHHHHHHHCSS
T ss_pred C-------CcCCCCEEEECC-HHHHHHHH-HHhcCCCEEEEeCCCCC---CCCeEEecCCCCCHHHHHHHHHHHHhcCCc
Confidence 4 477899998852 11211111 14578999999998766 4567777 66666542 2568
Q ss_pred eeEEEeeeccceEEEEEEEcceEEEEEecCCCCC
Q 023408 195 LVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDV 228 (282)
Q Consensus 195 ~VlQEFINH~gvLfKVYVIGd~v~vv~R~SLpN~ 228 (282)
+++||||. |.=|-|+|+|+++.-+.+.--+++
T Consensus 568 vlVEefI~--G~Ei~v~Vlggkvvaai~R~p~~V 599 (757)
T 3ln7_A 568 VMVEDYLV--GTEYRFFVLGDETLAVLLRVPANV 599 (757)
T ss_dssp EEEEECCC--SEEEEEEEETTEEEEEEEECCSEE
T ss_pred EEEEEcCC--CcEEEEEEECCEEEEEEEEecccc
Confidence 99999995 689999999999887655544543
No 38
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=97.61 E-value=0.00023 Score=68.02 Aligned_cols=110 Identities=13% Similarity=0.098 Sum_probs=78.2
Q ss_pred HHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeec
Q 023408 90 ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 168 (282)
Q Consensus 90 ~lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPl 168 (282)
.+.+..+++ .+.++ -+.++++...|+..+.+.+++. .|.+|++..++ +.++..+.+. .+.||+|+||.
T Consensus 82 ~~~~~l~~~-Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIptp~~~~~~-~~~ea~~~~~--~~g~PvVvKp~ 150 (431)
T 3mjf_A 82 GVVDAFRAA-GLAIFGPTQAAAQLEGSKAFTKDFLARH-------NIPSAEYQNFT-DVEAALAYVR--QKGAPIVIKAD 150 (431)
T ss_dssp THHHHHHHT-TCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCSBCCEEEES-CHHHHHHHHH--HHCSSEEEEES
T ss_pred HHHHHHHhc-CCCeeCCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEeeC-CHHHHHHHHH--HcCCeEEEEEC
Confidence 344444443 56666 7889999999999999998875 46789998885 2222222232 36799999997
Q ss_pred cccCCCCceeEEEEeccCccCC----C---------CCceeEEEeeeccceEEEEEEEcc
Q 023408 169 VADGSAKSHELSLAYDQYSLKK----L---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 169 vA~Gsa~SH~Maivf~~~gL~~----L---------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
... .+..+.++.+++.+.. + ..++++||||. |.-|=|.+++|
T Consensus 151 ~~~---gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~d 205 (431)
T 3mjf_A 151 GLA---AGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD--GEEASFIVMVD 205 (431)
T ss_dssp SSC---TTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC--SEEEEEEEEEE
T ss_pred CCC---CCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC--CcEEEEEEEEc
Confidence 554 4677888988776541 1 35899999999 57777777755
No 39
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=97.58 E-value=0.00015 Score=68.00 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=72.7
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCcee
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~ 178 (282)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.||+|+||....| +..
T Consensus 85 gi~~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~P~vvKp~~~~g---g~G 151 (417)
T 2ip4_A 85 GLLLFGPTQKAAMIEGSKAFAKGLMERY-------GIPTARYRVFRE-PLEALAYLE--EVGVPVVVKDSGLAA---GKG 151 (417)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHHT-------CCCBCCEEEESS-HHHHHHHHH--HHCSSEEEECTTSCS---STT
T ss_pred CCCEECccHHHHHHHcCHHHHHHHHHHc-------CCCCCCeeeeCC-HHHHHHHHH--HcCCCEEEEECCCCC---CCC
Confidence 46566 7788999999999999988865 466899988852 222222222 367999999987655 566
Q ss_pred EEEEeccCccCC---------CCCceeEEEeeeccceEEEEEEEcc
Q 023408 179 LSLAYDQYSLKK---------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 179 Maivf~~~gL~~---------L~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
+.++.+++.|.. ...++++||||. |.-|-|.+++|
T Consensus 152 v~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~sv~~~~~ 195 (417)
T 2ip4_A 152 VTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE--GEEATVLALTD 195 (417)
T ss_dssp CEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC--SCEEEEEEEES
T ss_pred EEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc--CcEEEEEEEEe
Confidence 788888766541 236899999998 56788887743
No 40
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=97.58 E-value=9.9e-05 Score=69.31 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=72.3
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCcee
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~ 178 (282)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.||+|+||....| +..
T Consensus 86 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~P~vvKp~~~~~---g~G 152 (422)
T 2xcl_A 86 GLHVFGPSKAAAIIEGSKQFAKDLMKKY-------DIPTAEYETFTS-FDEAKAYVQ--EKGAPIVIKADGLAA---GKG 152 (422)
T ss_dssp TCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHHHH--HHCSSEEEEESSCGG---GTC
T ss_pred CCCEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHHH--hcCCCEEEEeCCCCC---CCc
Confidence 56666 6788999999999999988875 366899988852 222222222 367999999987654 567
Q ss_pred EEEEeccCccCC----------C---CCceeEEEeeeccceEEEEEEEc
Q 023408 179 LSLAYDQYSLKK----------L---EPPLVLQEFVNHGGVLFKVYIVG 214 (282)
Q Consensus 179 Maivf~~~gL~~----------L---~~P~VlQEFINH~gvLfKVYVIG 214 (282)
+.++.+++.|.. . ..++++||||. |.=|-|.++.
T Consensus 153 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~ 199 (422)
T 2xcl_A 153 VTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS--GEEFSLMAFV 199 (422)
T ss_dssp EEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc--CcEEEEEEEE
Confidence 888888766542 1 36899999999 5677777773
No 41
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=97.56 E-value=0.0006 Score=64.05 Aligned_cols=128 Identities=12% Similarity=0.141 Sum_probs=86.1
Q ss_pred CceEEEeccCChHH-HHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC-Cc
Q 023408 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-SI 150 (282)
Q Consensus 74 pfDvILHKltd~~~-~~~lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~-~~ 150 (282)
.+|+|+--+.+..- ...++.+.+.. ++.++ -++.++...+|+..+.+.+++. .+.+|+++.++.... +.
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 178 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFY-RIAFIGPRIEASVLSYNKYLTKLYAKDL-------GIKTLDYVLLNEKNRANA 178 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHT-TCCEESCCHHHHHHHHSHHHHHHHHHHH-------TCBCCCCEEECTTTGGGH
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHHHHHHHC-------CcCCCCEEEEeCCchHHH
Confidence 45666544433210 01234444443 67766 5689999999999999998875 467899998864321 22
Q ss_pred hHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceE---EEEEEEcceE
Q 023408 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVL---FKVYIVGEAI 217 (282)
Q Consensus 151 ~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~-------L~~P~VlQEFINH~gvL---fKVYVIGd~v 217 (282)
.+ ...+.||+|+||....|+ -.+.++.+++.|.. ...++++||||.. ..= +-+.| ++.+
T Consensus 179 ~~---~~~lg~PvvVKP~~g~ss---~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~G-~~E~svi~v~v-~g~~ 247 (367)
T 2pvp_A 179 LD---LMNFNFPFIVKPSNAGSS---LGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQG-VKEYNLAGCKI-KKDF 247 (367)
T ss_dssp HH---HCCSCSCEEEEESSCCTT---TTCEEESSTTSHHHHHHHHTTTCSCEEEEECCTT-CEEEEEEEEEE-TTEE
T ss_pred HH---HhccCCCEEEEECCCCCC---CCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCCC-CceeeEEEEEE-CCEE
Confidence 22 356889999999887664 55788999887752 3569999999973 144 66777 7653
No 42
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=97.55 E-value=0.00013 Score=68.47 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=73.6
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCcee
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~ 178 (282)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.||+|+||....| +..
T Consensus 86 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~PvvvKp~~g~g---g~G 152 (424)
T 2yw2_A 86 GLKIFGPNKEAAKLEGSKAFAKTFMKKY-------GIPTARYEVFTD-FEKAKEYVE--KVGAPIVVKADGLAA---GKG 152 (424)
T ss_dssp TCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHHHH--HHCSSEEEEESSCCT---TCS
T ss_pred CCcEECcCHHHHHHHhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHHH--HcCCcEEEEeCCCCC---CCC
Confidence 56666 6788999999999999988865 366899988852 222222222 367999999987654 567
Q ss_pred EEEEeccCccCC----C---------CCceeEEEeeeccceEEEEEEE--cceEE
Q 023408 179 LSLAYDQYSLKK----L---------EPPLVLQEFVNHGGVLFKVYIV--GEAIK 218 (282)
Q Consensus 179 Maivf~~~gL~~----L---------~~P~VlQEFINH~gvLfKVYVI--Gd~v~ 218 (282)
+.++.+++.|.. + ..++++||||. |.-|-|.++ |+.++
T Consensus 153 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~ 205 (424)
T 2yw2_A 153 AVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE--GEEASYIVMINGDRYV 205 (424)
T ss_dssp EEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEE
T ss_pred EEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CcEEEEEEEEcCCEEE
Confidence 889988776541 1 25899999998 456666666 44443
No 43
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=97.50 E-value=0.00019 Score=68.38 Aligned_cols=99 Identities=9% Similarity=0.080 Sum_probs=68.2
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCcee
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~ 178 (282)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.||+|+||....| +..
T Consensus 107 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~PvVvKp~~~~g---g~G 173 (451)
T 2yrx_A 107 GLRIFGPSQRAALIEGSKAFAKELMKKY-------GIPTADHAAFTS-YEEAKAYIE--QKGAPIVIKADGLAA---GKG 173 (451)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHHHH--HHCSSEEEEECC-------CC
T ss_pred CCCEeCccHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHHH--hcCCcEEEEeCCCCC---CCc
Confidence 56666 5678888889999988888764 467899988852 222222222 367999999998765 457
Q ss_pred EEEEeccCccCC----C---------CCceeEEEeeeccceEEEEEEE
Q 023408 179 LSLAYDQYSLKK----L---------EPPLVLQEFVNHGGVLFKVYIV 213 (282)
Q Consensus 179 Maivf~~~gL~~----L---------~~P~VlQEFINH~gvLfKVYVI 213 (282)
+.++.+++.|.. + ..++++||||. |.=|=|.++
T Consensus 174 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~ 219 (451)
T 2yrx_A 174 VTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE--GEEFSFMAF 219 (451)
T ss_dssp EEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC--SEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc--CcEEEEEEE
Confidence 788888766541 1 36899999999 566777666
No 44
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=97.48 E-value=0.00013 Score=67.85 Aligned_cols=131 Identities=19% Similarity=0.275 Sum_probs=88.6
Q ss_pred CceEEEeccCChHH-HHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC-CCc
Q 023408 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-SSI 150 (282)
Q Consensus 74 pfDvILHKltd~~~-~~~lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~-~~~ 150 (282)
.+|+++-=+.+..- ...+|.+.+.. +++.+ =++.++...+||..+-+.+++. .+.+|+++.+.... ...
T Consensus 97 ~~D~vf~~l~G~~gEdg~~q~~le~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 168 (357)
T 4fu0_A 97 KVDLVFPVLHGKNGEDGTLQGIFELA-GIPVVGCDTLSSALCMDKDRAHKLVSLA-------GISVPKSVTFKRFNEEAA 168 (357)
T ss_dssp ECSEEEECCCSHHHHSSHHHHHHHHT-TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCBCCCEEEEEGGGHHHH
T ss_pred CCCEEEECCcCccccCHHHHHHHHHC-CCcEECcCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEeecCCChHHH
Confidence 45666543333211 11244444443 56655 3567889999999999988864 47789999886322 111
Q ss_pred hHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccC-------CCCCceeEEEeeeccceEEEEEEEcceEE
Q 023408 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK-------KLEPPLVLQEFVNHGGVLFKVYIVGEAIK 218 (282)
Q Consensus 151 ~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~-------~L~~P~VlQEFINH~gvLfKVYVIGd~v~ 218 (282)
.+.. .+.+.||+|+||....| |..|.+|.+++.|. ....++++|+||+ |.-+=|.|+|+...
T Consensus 169 ~~~~-~~~lg~PvvVKP~~gg~---s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~--G~e~~v~vl~~~~~ 237 (357)
T 4fu0_A 169 MKEI-EANLTYPLFIKPVRAGS---SFGITKVIEKQELDAAIELAFEHDTEVIVEETIN--GFEVGCAVLGIDEL 237 (357)
T ss_dssp HHHH-HHHCCSSEEEEETTCSS---STTCEEESSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEESSSE
T ss_pred HHHH-HHhcCCCEEEEECCCCC---CCceEEeccHHhHHHHHHHHhccCCeEEEEEecC--CEEEEEEEEecCCc
Confidence 2222 34689999999976443 67899999988885 3357899999995 78888999987643
No 45
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=97.44 E-value=0.00025 Score=67.44 Aligned_cols=100 Identities=12% Similarity=0.131 Sum_probs=70.0
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccc-eEeeeccccCCCCce
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVADGSAKSH 177 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fP-lI~KPlvA~Gsa~SH 177 (282)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+ ..+.|| +|+||....| +.
T Consensus 112 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~vvvKp~~~~g---g~ 178 (452)
T 2qk4_A 112 GVQCFGPTAEAAQLESSKRFAKEFMDRH-------GIPTAQWKAFTK-PEEACSFI--LSADFPALVVKASGLAA---GK 178 (452)
T ss_dssp TCCEESCCTTTTHHHHBHHHHHHHHHHT-------TCCBCCEEEESS-HHHHHHHH--HHCSSCEEEEEESBC------C
T ss_pred CCcEeCcCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHH--HhCCCCeEEEEeCCCCC---CC
Confidence 56666 6678888889999888888764 467899988852 22222222 247899 9999977654 56
Q ss_pred eEEEEeccCccCC----C---------CCceeEEEeeeccceEEEEEEEc
Q 023408 178 ELSLAYDQYSLKK----L---------EPPLVLQEFVNHGGVLFKVYIVG 214 (282)
Q Consensus 178 ~Maivf~~~gL~~----L---------~~P~VlQEFINH~gvLfKVYVIG 214 (282)
.+.++.+++.|.. + ..++++||||. |.=|-|.+++
T Consensus 179 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~ 226 (452)
T 2qk4_A 179 GVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD--GEEVSCLCFT 226 (452)
T ss_dssp CEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC--SEEEEEEEEE
T ss_pred CEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCeEEEEEEE
Confidence 7888888766542 1 36899999999 5778887774
No 46
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=97.41 E-value=0.00015 Score=67.49 Aligned_cols=140 Identities=16% Similarity=0.156 Sum_probs=85.8
Q ss_pred HHHhHHHhcCcEEEEecCCCCC---------------C---------CCCCceEEEeccCChHHHHHHHHHHHhCCCeEE
Q 023408 48 KLEGLARNKGILFVAIDQNRPL---------------S---------DQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL---------------~---------~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~V 103 (282)
.+...|++.|+..+-+|...+- . .+..+|.|+--..+... ..+.+..++. .+ +
T Consensus 21 ~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~~~~~~-~~~a~~~~~~-gl-~ 97 (403)
T 4dim_A 21 GLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLDTGI-VSLARICDKE-NL-V 97 (403)
T ss_dssp HHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECCSCSTTH-HHHHHHHHHH-TC-S
T ss_pred HHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeCCcchhH-HHHHHHHHHc-Cc-C
Confidence 4666778889888888752211 0 11346666532222211 1222222222 22 2
Q ss_pred eCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEe
Q 023408 104 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY 183 (282)
Q Consensus 104 IDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf 183 (282)
--++++++...|+..+.+.+++. .+.+|++..++ +.+++.+.. ..+.||+|+||....| +..|.++.
T Consensus 98 g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~g~P~vvKp~~g~g---g~Gv~~v~ 164 (403)
T 4dim_A 98 GLNEEAAIMCGDKYKMKEAFKKY-------NVNTARHFVVR-NENELKNAL--ENLKLPVIVKATDLQG---SKGIYIAK 164 (403)
T ss_dssp SCCHHHHHHHHCHHHHHHHHHHH-------TCCCCCEECCC-SHHHHHHHH--HTSCSSEEEECSCC--------CEEES
T ss_pred CCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHHH--hcCCCCEEEEECCCCC---CCCEEEEC
Confidence 45788999999999999988875 36689988774 222222222 3678999999998755 57788999
Q ss_pred ccCccCCC---------CCceeEEEeeec
Q 023408 184 DQYSLKKL---------EPPLVLQEFVNH 203 (282)
Q Consensus 184 ~~~gL~~L---------~~P~VlQEFINH 203 (282)
+++.|... ..++++||||..
T Consensus 165 ~~~el~~~~~~~~~~~~~~~~lvEe~i~g 193 (403)
T 4dim_A 165 KEEEAIDGFNETMNLTKRDYCIVEEFIEG 193 (403)
T ss_dssp SHHHHHHHHHHHHHHCSSSCCEEEECCCS
T ss_pred CHHHHHHHHHHHHhcCcCCcEEEEEccCC
Confidence 98877521 468999999984
No 47
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=97.41 E-value=0.00039 Score=66.76 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=75.8
Q ss_pred HHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeecc
Q 023408 91 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 169 (282)
Q Consensus 91 lq~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlv 169 (282)
+.+..++. .+.++ -+.++++...|+..+.+.+++. .|.+|++..+++ .++..+.+. .+.||+|+||..
T Consensus 99 ~~~~l~~~-Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~~-~~ea~~~~~--~~g~PvVvKp~~ 167 (442)
T 3lp8_A 99 LSDALTEE-GILVFGPSKAAARLESSKGFTKELCMRY-------GIPTAKYGYFVD-TNSAYKFID--KHKLPLVVKADG 167 (442)
T ss_dssp HHHHHHHT-TCEEESCCHHHHHHHHCHHHHHHHHHHH-------TCCBCCEEEESS-HHHHHHHHH--HSCSSEEEEESS
T ss_pred HHHHHHhc-CCcEecCCHHHHHHhhCHHHHHHHHHHC-------CCCCCCEEEECC-HHHHHHHHH--HcCCcEEEeECC
Confidence 44444443 56666 6778888899999888888765 466899988852 222222222 468999999985
Q ss_pred ccCCCCceeEEEEeccCccCC----------C---CCceeEEEeeeccceEEEEEEEcc
Q 023408 170 ADGSAKSHELSLAYDQYSLKK----------L---EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 170 A~Gsa~SH~Maivf~~~gL~~----------L---~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
.. .+..+.++.+++.+.. . ..++++||||. |.=|=|.++.|
T Consensus 168 ~~---gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~d 221 (442)
T 3lp8_A 168 LA---QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE--GKEISFFTLVD 221 (442)
T ss_dssp CC---TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEE
T ss_pred CC---CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec--CcEEEEEEEEC
Confidence 54 4677888988766531 1 25899999999 56777777754
No 48
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=97.37 E-value=0.0016 Score=63.27 Aligned_cols=88 Identities=16% Similarity=0.243 Sum_probs=66.1
Q ss_pred eCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEe
Q 023408 104 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY 183 (282)
Q Consensus 104 IDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf 183 (282)
--++++++...||..+.+.+++. .+.+|++..+++ .++..+.. ..+.||+|+||....| +..|.++.
T Consensus 128 g~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~ee~~~~~--~~lg~PvVVKP~~g~g---g~Gv~iv~ 194 (474)
T 3vmm_A 128 GAGVQAAENARDKNKMRDAFNKA-------GVKSIKNKRVTT-LEDFRAAL--EEIGTPLILKPTYLAS---SIGVTLIT 194 (474)
T ss_dssp CSCHHHHHHTTCHHHHHHHHHHT-------TSCCCCEEEECS-HHHHHHHH--HHSCSSEEEEESSCCT---TTTCEEEC
T ss_pred CCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHH--HHcCCCEEEEECCCCc---CceEEEEC
Confidence 67899999999999999998875 467899988853 22222222 3578999999998766 45677899
Q ss_pred ccCccCC-------------------CCCceeEEEeeecc
Q 023408 184 DQYSLKK-------------------LEPPLVLQEFVNHG 204 (282)
Q Consensus 184 ~~~gL~~-------------------L~~P~VlQEFINH~ 204 (282)
+++.|.. ...++++||||...
T Consensus 195 ~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 195 DTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp CTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBC
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCc
Confidence 9887641 24689999999854
No 49
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=97.32 E-value=0.0017 Score=58.10 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=81.6
Q ss_pred hHHHhHHHhcCcEEEEecCCCC--------CCCC---CC-c---------eEEEeccCChHH-HHHHHHHHHhCCCeEEe
Q 023408 47 PKLEGLARNKGILFVAIDQNRP--------LSDQ---GP-F---------DIVLHKLTGKEW-RQILEEYRQTHPEVTVL 104 (282)
Q Consensus 47 ~~l~~~~~~~Gi~fV~ID~~~p--------L~~Q---gp-f---------DvILHKltd~~~-~~~lq~y~~~hP~v~VI 104 (282)
..+...+++.|+.++.+|.+.. +.+. .+ + |+|+ ..++.. ...++.. + .-.+.++
T Consensus 14 ~~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~d~i~--~~~e~~~~~~~~~l-e-~~g~~~~ 89 (334)
T 2r85_A 14 LQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVV--PTGSFVAHLGIELV-E-NMKVPYF 89 (334)
T ss_dssp HHHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCHHHHHHTTEEEC--CCTTHHHHHCHHHH-H-TCCSCBB
T ss_pred HHHHHHHHhCCCEEEEEECCCCCcccccccccCceEecCCcChHHhcccCCEEE--ECcchhhhhHHHHH-H-HcCCCcc
Confidence 3466778889999999988742 1111 12 2 5554 112211 1112222 2 2356677
Q ss_pred CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEec
Q 023408 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (282)
Q Consensus 105 DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~ 184 (282)
-++++++...|+..+.+.+++. .+.+|++ ++ +.+ .+.||+|+||....|+ ..+.++.+
T Consensus 90 ~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~--~~-~~~---------~l~~P~vvKP~~g~~s---~Gv~~v~~ 147 (334)
T 2r85_A 90 GNKRVLRWESDRNLERKWLKKA-------GIRVPEV--YE-DPD---------DIEKPVIVKPHGAKGG---KGYFLAKD 147 (334)
T ss_dssp SCTTHHHHHHSHHHHHHHHHHT-------TCCCCCB--CS-CGG---------GCCSCEEEEECC-------TTCEEESS
T ss_pred CCHHHHHHHHhHHHHHHHHHHc-------CCCCCCc--cC-ChH---------HcCCCEEEEeCCCCCC---CCEEEECC
Confidence 7789999999999999888764 3567887 32 211 2469999999988765 45678888
Q ss_pred cCccCCC----------C--CceeEEEeeec
Q 023408 185 QYSLKKL----------E--PPLVLQEFVNH 203 (282)
Q Consensus 185 ~~gL~~L----------~--~P~VlQEFINH 203 (282)
++.|... . .++++||||.-
T Consensus 148 ~~el~~~~~~~~~~~~~~~~~~~lvee~i~G 178 (334)
T 2r85_A 148 PEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG 178 (334)
T ss_dssp HHHHHHHHHHHHCCCSGGGCCSEEEEECCCC
T ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEeccCC
Confidence 7766421 2 78999999983
No 50
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=97.29 E-value=0.00027 Score=67.09 Aligned_cols=102 Identities=12% Similarity=0.281 Sum_probs=72.0
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEeeeccccCCCCc
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--vi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 176 (282)
.+.++ -++++++.+.|+..+.+.+++. .+.+|++. .++ +.+++.+.. ..+.||+|+||....| +
T Consensus 103 g~~~~g~~~~~~~~~~dK~~~~~~l~~~-------Gip~p~~~~~~~~-~~~e~~~~~--~~~g~PvvvKp~~g~g---g 169 (446)
T 3ouz_A 103 NIKFIGPSVEAMNLMSDKSKAKQVMQRA-------GVPVIPGSDGALA-GAEAAKKLA--KEIGYPVILKAAAGGG---G 169 (446)
T ss_dssp TCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSSCC-SHHHHHHHH--HHHCSSEEEEETTCCT---T
T ss_pred CCceECcCHHHHHHhCCHHHHHHHHHHc-------CCCcCCCcccCCC-CHHHHHHHH--HHhCCCEEEEECCCCC---C
Confidence 56666 6789999999999999998875 35677775 342 222222222 2467999999997654 6
Q ss_pred eeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEEcc
Q 023408 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 177 H~Maivf~~~gL~~L-------------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..|.++.+++.|... ..++++||||... .-|=|.|++|
T Consensus 170 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~d 220 (446)
T 3ouz_A 170 RGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP-RHIEVQVIGD 220 (446)
T ss_dssp CSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSC-EEEEEEEEEC
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC-cEEEEEEEEc
Confidence 778899998887531 5799999999863 3455555543
No 51
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.26 E-value=0.00048 Score=73.38 Aligned_cols=153 Identities=17% Similarity=0.260 Sum_probs=98.3
Q ss_pred HHHhHHHhcCcEEEEecCCCCCC-------C-----------------CCCceEEEeccCCh---HHHHHHHH--HHHhC
Q 023408 48 KLEGLARNKGILFVAIDQNRPLS-------D-----------------QGPFDIVLHKLTGK---EWRQILEE--YRQTH 98 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~-------~-----------------QgpfDvILHKltd~---~~~~~lq~--y~~~h 98 (282)
.+...+++.|+..+.+|.+.... + ...+|+|+-=+-+. .....+.+ ..+++
T Consensus 32 ~~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~ 111 (1073)
T 1a9x_A 32 QACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEF 111 (1073)
T ss_dssp HHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHHc
Confidence 36667888999999999764321 0 01345444322211 11111111 22232
Q ss_pred CCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCce
Q 023408 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (282)
Q Consensus 99 P~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH 177 (282)
++.++ -++++++...||..+.+.++++ .+.+|++..+++ .++..+.. ..+.||+|+||....|+ .
T Consensus 112 -gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~~-~~ea~~~~--~~ig~PvVvKp~~~~Gg---~ 177 (1073)
T 1a9x_A 112 -GVTMIGATADAIDKAEDRRRFDVAMKKI-------GLETARSGIAHT-MEEALAVA--ADVGFPCIIRPSFTMGG---S 177 (1073)
T ss_dssp -TCEECSSCHHHHHHHHSHHHHHHHHHHT-------TCCCCSEEEESS-HHHHHHHH--HHHCSSEEEEETTCCTT---T
T ss_pred -CCeeeCCCHHHHHHhhCHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHHH--HHcCCCEEEEECCCCCC---C
Confidence 56677 7789999999999999998875 467899988853 22222222 23679999999998774 4
Q ss_pred eEEEEeccCccCCC---------CCceeEEEeeeccceEEEEEEEcc
Q 023408 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 178 ~Maivf~~~gL~~L---------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
.+.++.+++.|... ..++++||||.. ..=|-|-|++|
T Consensus 178 Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G-~~E~~v~v~~d 223 (1073)
T 1a9x_A 178 GGGIAYNREEFEEICARGLDLSPTKELLIDESLIG-WKEYEMEVVRD 223 (1073)
T ss_dssp TCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTT-SEEEEEEEEEC
T ss_pred ceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCC-CeEEEEEEEEe
Confidence 66789998776522 248999999984 35666777776
No 52
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=97.25 E-value=0.00048 Score=64.96 Aligned_cols=99 Identities=12% Similarity=0.089 Sum_probs=72.1
Q ss_pred EEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEE
Q 023408 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (282)
Q Consensus 102 ~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Mai 181 (282)
++--++++++...||..+.+.+++. .|.+|++..+++ .++..+.+ ..+.||+|+||....| +..+.+
T Consensus 93 ~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~e~~~~~--~~~g~PvvvKp~~~~g---g~Gv~~ 159 (412)
T 1vkz_A 93 VFGPVKEVARLEGSKVYAKRFMKKY-------GIRTARFEVAET-PEELREKI--KKFSPPYVIKADGLAR---GKGVLI 159 (412)
T ss_dssp BSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHH--TTSCSSEEEEESSCCS---SCCEEE
T ss_pred hhCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEECC-HHHHHHHH--HhcCCCEEEEeCCCCC---CCCEEE
Confidence 4446788999999999999998875 466899988852 22222222 3578999999988765 567889
Q ss_pred EeccCccCC-----------CC--CceeEEEeeeccceEEEEEEEcc
Q 023408 182 AYDQYSLKK-----------LE--PPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 182 vf~~~gL~~-----------L~--~P~VlQEFINH~gvLfKVYVIGd 215 (282)
+.+++.|.. .. .++++||||. |.=|=|.+++|
T Consensus 160 v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~--G~E~sv~~~~d 204 (412)
T 1vkz_A 160 LDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA--GNELSAMAVVN 204 (412)
T ss_dssp ESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC--SEEEEEEEEEE
T ss_pred ECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc--CcEEEEEEEEC
Confidence 988766542 11 3899999999 67788888743
No 53
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.12 E-value=0.0028 Score=67.46 Aligned_cols=102 Identities=21% Similarity=0.425 Sum_probs=64.3
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCcee
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~ 178 (282)
.+.++ -++++++...||..+.+.++++ .|.+|++..+.+ .++..+.. ..+.||+|+||....| +..
T Consensus 658 Gi~i~G~~~~ai~~~~DK~~~~~ll~~~-------GIp~P~~~~~~s-~eea~~~~--~~ig~PvvVKP~~~~g---G~G 724 (1073)
T 1a9x_A 658 GVPVIGTSPDAIDRAEDRERFQHAVERL-------KLKQPANATVTA-IEMAVEKA--KEIGYPLVVRASYVLG---GRA 724 (1073)
T ss_dssp TCCBCSSCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEECCS-HHHHHHHH--HHHCSSEEEEC----------C
T ss_pred CCCeeCCCHHHHHHhhCHHHHHHHHHHc-------CcCCCCceEECC-HHHHHHHH--HHcCCCEEEEECCCCC---CCC
Confidence 45555 5688999999999999998875 366899987752 22222222 2367999999998766 568
Q ss_pred EEEEeccCccCCC---------CCceeEEEeeeccceEEEEEEEcc
Q 023408 179 LSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 179 Maivf~~~gL~~L---------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
|.+|.+++.|... ..|+++|+||+.. .=|=|-+++|
T Consensus 725 v~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~-~E~~V~~l~d 769 (1073)
T 1a9x_A 725 MEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDA-VEVDVDAICD 769 (1073)
T ss_dssp EEEECSHHHHHHHHHHCC--------EEEBCCTTC-EEEEEEEEEC
T ss_pred eEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCC-cEEEEEEEEE
Confidence 9999998877521 3599999999854 2444555544
No 54
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=97.06 E-value=0.0017 Score=61.76 Aligned_cols=102 Identities=8% Similarity=0.209 Sum_probs=69.9
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEeeeccccCCCCc
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--vi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 176 (282)
.+.++ -++++++...|+..+.+.+++. .|.+|++. .++ +.+++.+.+. .+.||+|+||....| +
T Consensus 104 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~g---g 170 (461)
T 2dzd_A 104 GIIFIGPNENHLDMFGDKVKARHAAVNA-------GIPVIPGSDGPVD-GLEDVVAFAE--AHGYPIIIKAALGGG---G 170 (461)
T ss_dssp TCEESSCCHHHHHHTTSHHHHHHHHHHT-------TCCBCCBCSSCCS-SHHHHHHHHH--HHCSCEEEEESTTCS---S
T ss_pred CCEEECCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCCcccCcC-CHHHHHHHHH--hcCCcEEEEeCCCCC---C
Confidence 56554 5588999999999999988765 36677775 343 2222222222 367999999998766 4
Q ss_pred eeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEEcc
Q 023408 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 177 H~Maivf~~~gL~~L-------------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..+.++.+++.|... ..++++||||.. +.-|-|.+++|
T Consensus 171 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~ 221 (461)
T 2dzd_A 171 RGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIEN-PKHIEVQILGD 221 (461)
T ss_dssp SSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCS-CEEEEEEEEEC
T ss_pred CCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCC-CeEEEEEEEEc
Confidence 568889998876421 468999999985 34455666654
No 55
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=96.88 E-value=0.0012 Score=62.58 Aligned_cols=101 Identities=8% Similarity=0.164 Sum_probs=69.3
Q ss_pred CeEEeC-chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCc-hHHHHhcCCccceEeeeccccCCCC
Q 023408 100 EVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSI-PDVVLKAGLTLPLVAKPLVADGSAK 175 (282)
Q Consensus 100 ~v~VID-P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--vi~~d~~~~-~~~l~~agL~fPlI~KPlvA~Gsa~ 175 (282)
.+.++= ++++++...|+..+.+.+++. .|.+|++. .++ +.+++ .+.+. .+.||+|+||....|
T Consensus 99 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~~--~~g~PvvvKp~~g~g--- 165 (449)
T 2w70_A 99 GFIFIGPKAETIRLMGDKVSAIAAMKKA-------GVPCVPGSDGPLG-DDMDKNRAIAK--RIGYPVIIKASGGGG--- 165 (449)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHH-------TCCBCSBCSSCCC-SCHHHHHHHHH--HHCSSEEEEETTCCT---
T ss_pred CCceECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccccC-CHHHHHHHHHH--HhCCcEEEEECCCCC---
Confidence 566554 588999999999999988875 35677775 443 22233 22222 367999999998766
Q ss_pred ceeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEEc
Q 023408 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVG 214 (282)
Q Consensus 176 SH~Maivf~~~gL~~L-------------~~P~VlQEFINH~gvLfKVYVIG 214 (282)
+..+.++.+++.|... ..++++||||.. +.=|-|.+++
T Consensus 166 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~~~~ 216 (449)
T 2w70_A 166 GRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN-PRHVEIQVLA 216 (449)
T ss_dssp TTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSS-CEEEEEEEEE
T ss_pred CCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCC-CeEEEEEEEE
Confidence 4567888887766421 469999999975 3445666664
No 56
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=96.66 E-value=0.001 Score=63.00 Aligned_cols=102 Identities=14% Similarity=0.254 Sum_probs=69.4
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEeeeccccCCCCc
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--vi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 176 (282)
.+.++ -++++++...|+..+.+.+++. .|.+|++. .++ +.+++.+.+. .+.||+|+||....| +
T Consensus 98 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~g---g 164 (451)
T 1ulz_A 98 GITFIGPHWKVIELMGDKARSKEVMKKA-------GVPVVPGSDGVLK-SLEEAKALAR--EIGYPVLLKATAGGG---G 164 (451)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSSCC-CHHHHHHHHH--HHCSSEEEEECSSSS---C
T ss_pred CCeEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHHHH--HcCCCEEEEECCCCC---C
Confidence 56655 5588999999999999988865 35677775 443 2222222222 367999999998766 4
Q ss_pred eeEEEEeccCccCC------------C-CCceeEEEeeeccceEEEEEEEcc
Q 023408 177 HELSLAYDQYSLKK------------L-EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 177 H~Maivf~~~gL~~------------L-~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..+.++.+++.|.. + ..++++||||..+ .=|-|.+++|
T Consensus 165 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~~ 215 (451)
T 1ulz_A 165 RGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENP-KHIEYQVLGD 215 (451)
T ss_dssp CSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC-EEEEEEEEEC
T ss_pred ccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC-eEEEEEEEEc
Confidence 56778888776642 1 4689999999853 4556666653
No 57
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=96.64 E-value=0.0026 Score=60.21 Aligned_cols=101 Identities=17% Similarity=0.265 Sum_probs=68.7
Q ss_pred CeEEeC-chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEeeeccccCCCCc
Q 023408 100 EVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (282)
Q Consensus 100 ~v~VID-P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--vi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 176 (282)
.+.++- ++++++...|+..+.+.+++. .|.+|++. .++ +.+++.+.+. .+.||+|+||....| +
T Consensus 98 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~g---g 164 (451)
T 2vpq_A 98 QLKFIGPSYQSIQKMGIKDVAKAEMIKA-------NVPVVPGSDGLMK-DVSEAKKIAK--KIGYPVIIKATAGGG---G 164 (451)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSCBS-CHHHHHHHHH--HHCSSEEEEETTCCT---T
T ss_pred CCeEECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccCcC-CHHHHHHHHH--hcCCcEEEEECCCCC---C
Confidence 676665 488999999999999988875 35566654 443 2222222222 367999999988765 5
Q ss_pred eeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEEc
Q 023408 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVG 214 (282)
Q Consensus 177 H~Maivf~~~gL~~L-------------~~P~VlQEFINH~gvLfKVYVIG 214 (282)
..+.++.+++.|... ..++++||||... .=|-|.+++
T Consensus 165 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~ 214 (451)
T 2vpq_A 165 KGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENF-RHIEIQIVG 214 (451)
T ss_dssp CSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSE-EEEEEEEEE
T ss_pred CCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCC-eEEEEEEEE
Confidence 677888887665421 4689999999853 345555554
No 58
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=96.53 E-value=0.0036 Score=62.12 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=66.7
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEE----Ecc---------------------CCCCchHH
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV----IER---------------------DASSIPDV 153 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vv----i~~---------------------d~~~~~~~ 153 (282)
.+.++ -++++++.+.|+..+.+.+++.. |.+|++.. ++. ...+..+.
T Consensus 148 Gi~~iGp~~~ai~~~~DK~~~k~ll~~~G-------VPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea 220 (540)
T 3glk_A 148 GVAFLGPPSEAMWALGDKIASTVVAQTLQ-------VPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 220 (540)
T ss_dssp TCEESSCCHHHHC---CHHHHHHHHHHTT-------CCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHH
T ss_pred CCceeCCCHHHHHHhCCHHHHHHHHHHcC-------CCCCCcccccccccccccccccccccccccccccccCcCCHHHH
Confidence 67887 78889999999999999988753 44555543 000 01111111
Q ss_pred HH-hcCCccceEeeeccccCCCCceeEEEEeccCccCCC---------CCceeEEEeeeccceEEEEEEEcc
Q 023408 154 VL-KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 154 l~-~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L---------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
.. ...+.||+|+||....| +..|.+|.+++.|... ..++++|+||.. +.=|=|-|+||
T Consensus 221 ~~~a~~igyPvVVKp~~ggG---G~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g-~rei~V~vl~d 288 (540)
T 3glk_A 221 LEAAERIGFPLMIKASEGGG---GKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH-ARHLEVQILAD 288 (540)
T ss_dssp HHHHHHHCSSEEEEETTCC-------EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSS-EEEEEEEEEEC
T ss_pred HHHHHhcCCcEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEc
Confidence 11 23478999999988765 6789999999887532 468999999964 45666777765
No 59
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=96.49 E-value=0.0026 Score=59.33 Aligned_cols=131 Identities=8% Similarity=0.052 Sum_probs=75.1
Q ss_pred HHHhHHHhcCcEEEEecCCCCCC---CCCCce--EEEecc------CCh-----HHHHH--HHHHHHhCCCeEEeCchhH
Q 023408 48 KLEGLARNKGILFVAIDQNRPLS---DQGPFD--IVLHKL------TGK-----EWRQI--LEEYRQTHPEVTVLDPPYA 109 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~---~QgpfD--vILHKl------td~-----~~~~~--lq~y~~~hP~v~VIDP~~a 109 (282)
.+...|++.|+.++-+|.+.+-. -..-.| +++.+. .|. ++... ++.. + .-.+.+..+.++
T Consensus 15 ~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~~~dl~~~~dvitpe~e~v~~~~l~~l-e-~~~~p~~p~~~~ 92 (320)
T 2pbz_A 15 QILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTSILNDDGIVVPHGSFVAYLGIEAI-E-KAKARFFGNRRF 92 (320)
T ss_dssp HHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSCSCCTTCCSSBCCCBTTHHHHSCHHHH-H-TCCSCCBSCSSG
T ss_pred HHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCcHHHHHhcCCEEEecccchhHHHHHHH-H-HcCCCcCCCHHH
Confidence 35567889999999999874321 111112 111111 121 22221 2222 2 335678889999
Q ss_pred HhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccC
Q 023408 110 IQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK 189 (282)
Q Consensus 110 i~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~ 189 (282)
++...||...-+.++++ .|.+|++.. .+++ .+.||+|+||..+.| ++...++.+ +.|.
T Consensus 93 l~~~~dr~~~~~~l~~~-------Gip~P~~~~----~ee~-------~i~~PviVKp~~g~g---gkG~~~v~~-eel~ 150 (320)
T 2pbz_A 93 LKWETTFELQDKALEGA-------GIPRVEVVE----PEDA-------KPDELYFVRIEGPRG---GSGHFIVEG-SELE 150 (320)
T ss_dssp GGGGSCHHHHHHHHHHH-------TCCBCCBCC----SCCC-------CSSCCEEEECC---------------C-EECS
T ss_pred HHHHHhHHHHHHHHHHC-------CcCCCCeeC----HhHc-------CcCCcEEEEECCCCC---CCCEEEECh-HHHH
Confidence 99999998776777765 366788762 2222 488999999998764 788999999 8886
Q ss_pred CC----CCceeEEEeee
Q 023408 190 KL----EPPLVLQEFVN 202 (282)
Q Consensus 190 ~L----~~P~VlQEFIN 202 (282)
.. ..++++||||+
T Consensus 151 ~~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 151 ERLSTLEEPYRVERFIP 167 (320)
T ss_dssp CCCC----CCEEEECCC
T ss_pred HHHHhcCCCEEEEeeec
Confidence 43 25899999999
No 60
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=96.47 E-value=0.0065 Score=61.11 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=71.7
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEE----Ec---------------------cCCCCchHH
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV----IE---------------------RDASSIPDV 153 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vv----i~---------------------~d~~~~~~~ 153 (282)
.+.++ -++++++.+.|+..+.+.+++.. |.+|++.. ++ ....+..+.
T Consensus 164 Gi~~iGp~~~ai~~~~DK~~ak~ll~~aG-------VPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea 236 (587)
T 3jrx_A 164 GVAFLGPPSEAMWALGDKIASTVVAQTLQ-------VPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 236 (587)
T ss_dssp TCEESSCCHHHHHHHCSHHHHHHHHHHTT-------CCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHH
T ss_pred CCCeeCCCHHHHHHhCCHHHHHHHHHHcC-------CCCCCeecccccccccccccccccccccchhhccccccCCHHHH
Confidence 67887 78889999999999999988753 34454432 00 001111111
Q ss_pred HH-hcCCccceEeeeccccCCCCceeEEEEeccCccCCC---------CCceeEEEeeeccceEEEEEEEcc
Q 023408 154 VL-KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 154 l~-~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L---------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
.. ...+.||+|+||....| +..|.+|.+++.|... ..++++|+||.. +.=|=|-|+||
T Consensus 237 ~~~a~~iGyPvVVKp~~GgG---GkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g-~rei~V~vl~D 304 (587)
T 3jrx_A 237 LEAAERIGFPLMIKASEGGG---GKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH-ARHLEVQILAD 304 (587)
T ss_dssp HHHHHHHCSSEEEEETTCCS---SSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCS-CEEEEEEEEEC
T ss_pred HHHHHhcCCeEEEEeCCCCC---CCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEc
Confidence 11 23478999999988766 5679999998887522 469999999975 35666777766
No 61
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=96.41 E-value=0.0029 Score=62.31 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=66.7
Q ss_pred eEEeC-chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEE-----ccC-----------------CCCchHHHH-h
Q 023408 101 VTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-----ERD-----------------ASSIPDVVL-K 156 (282)
Q Consensus 101 v~VID-P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi-----~~d-----------------~~~~~~~l~-~ 156 (282)
+.++= ++++++...|+..+.+.+++.. |.+|++..+ ..+ ..+..+.+. .
T Consensus 158 i~~~gp~~~a~~~~~dK~~~k~~l~~~G-------Ip~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~ 230 (554)
T 1w96_A 158 VIFIGPPGNAMRSLGDKISSTIVAQSAK-------VPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKA 230 (554)
T ss_dssp CEESSCCHHHHHHSCSHHHHHHHHHHTT-------CCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHhCHHHHHHHHHHCC-------CCcCCccccccccccccccccccccccccccccCCCCHHHHHHHH
Confidence 54443 4668999999999999888753 445555332 000 011111111 1
Q ss_pred cCCccceEeeeccccCCCCceeEEEEeccCccCCC---------CCceeEEEeeeccceEEEEEEEcc
Q 023408 157 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 157 agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L---------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..+.||+|+||....| +..|.++.+++.|... ..++++||||.. +.=|=|.+++|
T Consensus 231 ~~~g~PvVvKp~~g~g---g~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g-~~e~sv~vl~d 294 (554)
T 1w96_A 231 KRIGFPVMIKASEGGG---GKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGR-ARHLEVQLLAD 294 (554)
T ss_dssp HHHCSSEEEEETTCCT---TTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCS-CEEEEEEEEEC
T ss_pred HHcCCCEEEEECCCCC---CceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEc
Confidence 2467999999998776 4578889887776521 468999999984 34555666654
No 62
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=96.33 E-value=0.0043 Score=63.24 Aligned_cols=108 Identities=15% Similarity=0.298 Sum_probs=39.2
Q ss_pred HHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEeeecc
Q 023408 93 EYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLV 169 (282)
Q Consensus 93 ~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--vi~~d~~~~~~~l~~agL~fPlI~KPlv 169 (282)
+..+++ .+.++ -++++++.+.|+..+.+.+++. .|.+|+++ .+. +.++..+. ...+.||+|+||..
T Consensus 93 ~~le~~-Gi~~iGp~~~ai~~~~dK~~~k~~l~~~-------GVPvpp~~~~~~~-s~~e~~~~--a~~igyPvVvKp~~ 161 (681)
T 3n6r_A 93 EALEAE-GVIFVGPPKGAIEAMGDKITSKKIAQEA-------NVSTVPGYMGLIE-DADEAVKI--SNQIGYPVMIKASA 161 (681)
T ss_dssp HHHHTT-TCCCSSSCHHHHHHTTSHHHHHHHHHTT-------TCCCCCC-------------------------------
T ss_pred HHHHHc-CCceECCCHHHHHHhCCHHHHHHHHHHc-------CcCcCCccccCcC-CHHHHHHH--HHhcCCcEEEEECC
Confidence 334444 66666 6789999999999999988764 35667764 333 22332222 23578999999997
Q ss_pred ccCCCCceeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEEcc
Q 023408 170 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 170 A~Gsa~SH~Maivf~~~gL~~L-------------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..| +..|.++.+++.|... +.++++|+||... .=|=|-|++|
T Consensus 162 ggg---gkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~-rei~V~v~~d 216 (681)
T 3n6r_A 162 GGG---GKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP-RHIEIQVLCD 216 (681)
T ss_dssp --------------------------------------------CCSC-EEEEEEEECC
T ss_pred CCC---CCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC-cEEEEEEEEe
Confidence 655 6779999998887532 2489999999863 5666777765
No 63
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.33 E-value=7.6e-05 Score=56.57 Aligned_cols=65 Identities=17% Similarity=0.425 Sum_probs=42.6
Q ss_pred cccCCceE--EEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC------------C-CCceeEE
Q 023408 134 KVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK------------L-EPPLVLQ 198 (282)
Q Consensus 134 ~i~vP~~v--vi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~------------L-~~P~VlQ 198 (282)
.|.+|+++ .+. +.++..+.. ..+.||+|+||....| +..+.++.+++.|.. . ..++++|
T Consensus 20 gip~p~~~~~~~~-~~~~~~~~~--~~~~~P~vvKp~~~~~---~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve 93 (108)
T 2cqy_A 20 EVNTIPGFDGVVK-DAEEAVRIA--REIGYPVMIKASAGGG---GKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIE 93 (108)
T ss_dssp CCCCCSCCCSCBS-SHHHHHHHH--HHHCSSEEEEETTSCC---TTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEE
T ss_pred CCCCCCCcccccC-CHHHHHHHH--HhcCCCEEEEECCCCC---CccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEe
Confidence 47788876 553 222222222 2468999999997655 446778888766642 1 3689999
Q ss_pred Eeeecc
Q 023408 199 EFVNHG 204 (282)
Q Consensus 199 EFINH~ 204 (282)
|||...
T Consensus 94 e~i~g~ 99 (108)
T 2cqy_A 94 KFIDNP 99 (108)
T ss_dssp ECCSSS
T ss_pred eccCCC
Confidence 999753
No 64
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=96.24 E-value=0.0084 Score=61.01 Aligned_cols=110 Identities=10% Similarity=0.199 Sum_probs=69.3
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEE-ccCCCCchHHHHhcCCccceEeeeccccCCCCce
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi-~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH 177 (282)
.+.++ -++++++.+.|+..+.+.+.+. .|.+|+++.. -.+.+++.+... .+.||+|+||....| +.
T Consensus 125 Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GVpvpp~~~~~~~s~~e~~~~a~--~igyPvvvKp~~G~G---g~ 192 (675)
T 3u9t_A 125 GLLFLGPPAAAIDAMGSKSAAKALMEEA-------GVPLVPGYHGEAQDLETFRREAG--RIGYPVLLKAAAGGG---GK 192 (675)
T ss_dssp TCEESSCCHHHHHHHTSHHHHHHHHHHT-------TCCBCCCCCSCCCCTTHHHHHHH--HSCSSBCCBCCC--------
T ss_pred CCceeCCCHHHHHHhchHHHHHHHHHHc-------CcCcCCccccCCCCHHHHHHHHH--hCCCcEEEEECCCCC---Cc
Confidence 45555 6789999999999999988875 3556766542 123333333332 477999999998765 56
Q ss_pred eEEEEeccCccCC----C---------CCceeEEEeeeccceEEEEEEEcc----eEEEEEe
Q 023408 178 ELSLAYDQYSLKK----L---------EPPLVLQEFVNHGGVLFKVYIVGE----AIKVVRR 222 (282)
Q Consensus 178 ~Maivf~~~gL~~----L---------~~P~VlQEFINH~gvLfKVYVIGd----~v~vv~R 222 (282)
.|.++.+++.|.. + ..++++|+||... .=|=|-|++| .+.+..|
T Consensus 193 Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~-reiev~v~~d~~G~vv~l~~r 253 (675)
T 3u9t_A 193 GMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP-RHVEIQVFADRHGHCLYLNER 253 (675)
T ss_dssp -CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC-BCEEEEEEECSSSCEEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC-cEEEEEEEEcCCCCEEEEecc
Confidence 7889999887742 1 3589999999864 3334444443 4455444
No 65
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=95.74 E-value=0.018 Score=62.10 Aligned_cols=102 Identities=9% Similarity=0.207 Sum_probs=66.3
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEeeeccccCCCCc
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--vi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 176 (282)
.+.++ -++++++.+.|+..+.+.+.+. .|.+|++. .++ +.++..+. ...+.||+|+||....| +
T Consensus 102 Gi~~iGp~~eai~~~~DK~~~r~ll~~a-------GIPvpp~~~~~v~-s~eea~~~--a~~iGyPvVVKP~~GgG---g 168 (1150)
T 3hbl_A 102 GIKFIGPHLEHLDMFGDKVKARTTAIKA-------DLPVIPGTDGPIK-SYELAKEF--AEEAGFPLMIKATSGGG---G 168 (1150)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSCBC-SSSTTTTT--GGGTCSSEEEECCC-------
T ss_pred CCCeeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCccccCCC-CHHHHHHH--HHHcCCCEEEEeCCCCC---C
Confidence 56666 6779999999999999988875 35677776 443 22222222 23578999999997765 6
Q ss_pred eeEEEEeccCccCC----C---------CCceeEEEeeeccceEEEEEEEcc
Q 023408 177 HELSLAYDQYSLKK----L---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 177 H~Maivf~~~gL~~----L---------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..|.++.+++.|.. + ..++++|+||... .=|=|-|+||
T Consensus 169 ~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~-reieV~vl~d 219 (1150)
T 3hbl_A 169 KGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP-KHIEVQVIGD 219 (1150)
T ss_dssp ---CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSC-EEEEEEEEEC
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCC-cEEEEEEEEe
Confidence 78999999888752 1 3589999999753 4455556654
No 66
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=95.31 E-value=0.029 Score=60.55 Aligned_cols=102 Identities=15% Similarity=0.258 Sum_probs=36.3
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEeeeccccCCCCc
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--vi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 176 (282)
.+.++ -++++++.+.|+..+.+.+.+. .|.+|++. .++ +.+++.+.. ..+.||+|+||....| +
T Consensus 118 Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GIPvp~~~~~~v~-s~eea~~~a--~~igyPvVVKp~~g~G---G 184 (1165)
T 2qf7_A 118 GIIFIGPKADTMRQLGNKVAARNLAISV-------GVPVVPATEPLPD-DMAEVAKMA--AAIGYPVMLKASWGGG---G 184 (1165)
T ss_dssp TCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBC----------------------------------------
T ss_pred CCceECCCHHHHHHHCCHHHHHHHHHHc-------CCCCCCeeCcCCC-CHHHHHHHH--HhcCCCEEEEeCCCCC---C
Confidence 56665 4588999999999999988765 36678876 443 222322222 3578999999998766 5
Q ss_pred eeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEEcc
Q 023408 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 177 H~Maivf~~~gL~~L-------------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
..|.++.+++.|... ..++++||||.. +.=|=|.+++|
T Consensus 185 ~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~g-g~EisV~vl~D 235 (1165)
T 2qf7_A 185 RGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER-ARHVESQILGD 235 (1165)
T ss_dssp -----------------------------------CCCSS-EEEEEEEEEEC
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccC-CcEEEEEEEEc
Confidence 578999998877521 258999999985 45566777765
No 67
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=94.39 E-value=0.035 Score=60.38 Aligned_cols=102 Identities=19% Similarity=0.316 Sum_probs=31.7
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCc-eEEEccCCCCchHHHHhcCCccceEeeeccccCCCCce
Q 023408 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR-QLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (282)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~-~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH 177 (282)
.+.++ -++++++.+.|+..+.+.+++. .|.+|+ +..++ +.++..+. ...+.||+|+||....| +.
T Consensus 128 Gi~~iGps~eai~~~~DK~~ak~ll~~a-------GIPvpp~~~~v~-s~eea~~~--a~~iGyPvVVKP~~GgG---Gk 194 (1236)
T 3va7_A 128 NIVFVGPSGDAIRKLGLKHSAREIAERA-------KVPLVPGSGLIK-DAKEAKEV--AKKLEYPVMVKSTAGGG---GI 194 (1236)
T ss_dssp TCEESSCCHHHHHHHHSTTHHHHHHHHT-------TCCCCC---------------------------------------
T ss_pred CCCeeCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEecC-CHHHHHHH--HHHcCCCEEEEeCCCCC---CC
Confidence 56655 6778889999999998888765 355655 44443 32232222 23578999999976655 67
Q ss_pred eEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEEcc
Q 023408 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (282)
Q Consensus 178 ~Maivf~~~gL~~L-------------~~P~VlQEFINH~gvLfKVYVIGd 215 (282)
.|.++.+++.|... ..++++||||.. +.=|=|.|++|
T Consensus 195 GV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G-~rEisV~vl~D 244 (1236)
T 3va7_A 195 GLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN-ARHVEIQMMGD 244 (1236)
T ss_dssp --------------------------------------C-CEEEEEEEEEE
T ss_pred CEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC-CeEEEEEEEec
Confidence 78999998877521 357999999986 45555666665
No 68
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=93.18 E-value=0.043 Score=47.88 Aligned_cols=93 Identities=12% Similarity=0.139 Sum_probs=57.9
Q ss_pred hcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeecccc--CCCCceeEEE-EeccCccC
Q 023408 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD--GSAKSHELSL-AYDQYSLK 189 (282)
Q Consensus 113 L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~--Gsa~SH~Mai-vf~~~gL~ 189 (282)
.+|...+.+.+.+. .|.+|++.++++ .++..+. ...+.||+|+||...+ |..++-...+ +.+++.|.
T Consensus 19 ~l~k~~~k~ll~~~-------GIp~p~~~~~~~-~~ea~~~--a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~ 88 (238)
T 1wr2_A 19 AMVEYEAKQVLKAY-------GLPVPEEKLAKT-LDEALEY--AKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELK 88 (238)
T ss_dssp EECHHHHHHHHHTT-------TCCCCCCEEESS-HHHHHHH--HHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHH
T ss_pred CCCHHHHHHHHHHc-------CcCCCCeEEeCC-HHHHHHH--HHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHH
Confidence 46777777777653 477899988853 2222221 1247899999998751 1123445556 67776664
Q ss_pred CC----------------CCceeEEEeeeccceEEEEEEEcce
Q 023408 190 KL----------------EPPLVLQEFVNHGGVLFKVYIVGEA 216 (282)
Q Consensus 190 ~L----------------~~P~VlQEFINH~gvLfKVYVIGd~ 216 (282)
.. ..++++|+||.++ .=|=|-+++|.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g-~E~~v~v~~d~ 130 (238)
T 1wr2_A 89 KKWEEIHENAKKYRPDAEILGVLVAPMLKPG-REVIIGVTEDP 130 (238)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEEEEECCCCC-EEEEEEEEEET
T ss_pred HHHHHHHHhhhhhCCCCccceEEEEECCCCC-eEEEEEEEeCC
Confidence 21 2579999999964 44445556654
No 69
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=92.66 E-value=0.25 Score=46.54 Aligned_cols=132 Identities=17% Similarity=0.145 Sum_probs=73.1
Q ss_pred HHhHHHhcCcEEEEecCCCCCC---CCCCceEEE-ec-cCC---hHHHHHHHH-------------HH-----HhCCCeE
Q 023408 49 LEGLARNKGILFVAIDQNRPLS---DQGPFDIVL-HK-LTG---KEWRQILEE-------------YR-----QTHPEVT 102 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL~---~QgpfDvIL-HK-ltd---~~~~~~lq~-------------y~-----~~hP~v~ 102 (282)
+...|++.|+.++-+|.+.+-. .....|-++ -- ..| +...+.+.+ |. .+.-.+.
T Consensus 32 l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~~~d~~~d~~~~~~l~~l~~~~~vV~pe~~~v~~~gl~~l~~~~g~~ 111 (361)
T 2r7k_A 32 ILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDNFSDIKNEEIQEKLRELNSIVVPHGSFIAYCGLDNVENSFLVP 111 (361)
T ss_dssp HHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEECSSGGGGGSHHHHHHHHHTTEEECCBHHHHHHHCHHHHHHTCCSC
T ss_pred HHHHHHHCCCEEEEEECCCCCCcccccccCceEEECCCcccccHHHHHHHHHHcCCEEEeCchhhhHHHHHHHHHHcCCC
Confidence 6678899999999999885421 112334322 22 334 322222211 11 1112333
Q ss_pred EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCCCCceeEEEE
Q 023408 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (282)
Q Consensus 103 VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maiv 182 (282)
+.-+..+++.-.+|...-+.+++. .|.+|++ ++ +.++ +.||+|+||.-+. .++...++
T Consensus 112 v~g~~~a~~~e~~k~~~k~~l~~~-------GIptp~~--~~-~~~e---------~~~PvVVK~~~~a---~GkGv~v~ 169 (361)
T 2r7k_A 112 MFGNRRILRWESERSLEGKLLREA-------GLRVPKK--YE-SPED---------IDGTVIVKFPGAR---GGRGYFIA 169 (361)
T ss_dssp BBSCGGGGGTTTCHHHHHHHHHHT-------TCCCCCE--ES-SGGG---------CCSCEEEECSCCC---C---EEEE
T ss_pred cCCCHHHHHHhhhHHHHHHHHHHc-------CcCCCCE--eC-CHHH---------cCCCEEEeeCCCC---CCCCEEEE
Confidence 444444455556665544555543 3667765 32 2111 2599999998765 47888999
Q ss_pred eccCccCC----C--------C--CceeEEEeee
Q 023408 183 YDQYSLKK----L--------E--PPLVLQEFVN 202 (282)
Q Consensus 183 f~~~gL~~----L--------~--~P~VlQEFIN 202 (282)
.+.+.+.. + . .++|+||||+
T Consensus 170 ~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~ 203 (361)
T 2r7k_A 170 SSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV 203 (361)
T ss_dssp SSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC
T ss_pred CCHHHHHHHHHHHHhccccccCCCCeEEEEeccc
Confidence 88766542 1 2 4799999998
No 70
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=82.80 E-value=0.68 Score=44.19 Aligned_cols=78 Identities=18% Similarity=0.135 Sum_probs=49.2
Q ss_pred cccCCceEEEccCCCCchHHHHhcCCccceEeeeccc-cCCCCceeEEEEeccCccCC-----C--------CCceeEEE
Q 023408 134 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA-DGSAKSHELSLAYDQYSLKK-----L--------EPPLVLQE 199 (282)
Q Consensus 134 ~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA-~Gsa~SH~Maivf~~~gL~~-----L--------~~P~VlQE 199 (282)
.|.+|++.++.+ .++..+... .+.||+++||... -|..++..+.++.+++.+.. + -..+++||
T Consensus 16 GIpvp~~~~~~s-~eea~~aa~--~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe 92 (397)
T 3ufx_B 16 GVPVPPGKVAYT-PEEAKRIAE--EFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAE 92 (397)
T ss_dssp TCCCCCEEEESS-HHHHHHHHH--HHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEE
T ss_pred CCCCCCeEEECC-HHHHHHHHH--HcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEE
Confidence 588999998853 222222222 3459999999872 24456678888877655531 1 24799999
Q ss_pred eeeccceEEEEEEEcc
Q 023408 200 FVNHGGVLFKVYIVGE 215 (282)
Q Consensus 200 FINH~gvLfKVYVIGd 215 (282)
|++++--+ =|-++.|
T Consensus 93 ~v~~g~El-~vgv~~D 107 (397)
T 3ufx_B 93 AVDIAKEY-YAGLILD 107 (397)
T ss_dssp CCCEEEEE-EEEEEEE
T ss_pred eecCCeeE-EEEEEec
Confidence 99875333 3444444
No 71
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=78.54 E-value=1.9 Score=40.91 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=50.5
Q ss_pred cccCCceEEEccCCCCchHHHHhcCCccc-eEeeecccc-CCCCceeEEEEeccCccCC---------C-----------
Q 023408 134 KVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVAD-GSAKSHELSLAYDQYSLKK---------L----------- 191 (282)
Q Consensus 134 ~i~vP~~vvi~~d~~~~~~~l~~agL~fP-lI~KPlvA~-Gsa~SH~Maivf~~~gL~~---------L----------- 191 (282)
.|.+|++.++.+ .++..+.. ..+.|| +++||.... |..++..+.++.+.+.+.. +
T Consensus 16 GIpvp~~~~~~s-~eea~~aa--~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~ 92 (388)
T 2nu8_B 16 GLPAPVGYACTT-PREAEEAA--SKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQP 92 (388)
T ss_dssp TCCCCCEEEESS-HHHHHHHH--HHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEE
T ss_pred CcCCCCeeEECC-HHHHHHHH--HHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcc
Confidence 578899998853 22222222 236799 999998743 3347788889887655431 0
Q ss_pred CCceeEEEeeeccceEEEEEEEcceE
Q 023408 192 EPPLVLQEFVNHGGVLFKVYIVGEAI 217 (282)
Q Consensus 192 ~~P~VlQEFINH~gvLfKVYVIGd~v 217 (282)
..++++|+|++|+--+ =|-++.|..
T Consensus 93 ~~~vlVEe~v~~~~E~-~v~v~~D~~ 117 (388)
T 2nu8_B 93 VNQILVEAATDIAKEL-YLGAVVDRS 117 (388)
T ss_dssp CCCEEEEECCCEEEEE-EEEEEEETT
T ss_pred cceEEEEEccccCCcE-EEEEEEecc
Confidence 1369999999975333 344555543
No 72
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=74.67 E-value=48 Score=33.43 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=89.9
Q ss_pred HHHhHHHhcCcEEEEec-CCCC-CCCCC--------CceEEEeccCChHHH-HHHH---------------------HHH
Q 023408 48 KLEGLARNKGILFVAID-QNRP-LSDQG--------PFDIVLHKLTGKEWR-QILE---------------------EYR 95 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID-~~~p-L~~Qg--------pfDvILHKltd~~~~-~~lq---------------------~y~ 95 (282)
-|.+.|++.|++...+| ++.= +.+.| ++|+|. |+.--+|. ..+. ++.
T Consensus 398 ~L~~~a~eaG~~~~~~~~i~dl~~~~~G~l~d~dg~~I~~lf-klypwE~m~~~~~~~~~~~~~~~~~~~g~~~~g~~ll 476 (619)
T 2io8_A 398 FMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVW-KTWAWETAFDQIREVSDREFAAVPIRTGHPQNEVRLI 476 (619)
T ss_dssp HHHHHHHHTTCEEEEEESSTTCEECSSSCEECTTSCBCCEEE-ESSCHHHHHHHHHHC---CCSSCCCCSCCSSCCCCHH
T ss_pred HHHHHHHHCCCceEEecchHhEEECCCCcEECCCCCEeeeEE-ecCCHHHHHHHhhhhcccccccccccccCccchHHHH
Confidence 36688999999999997 5431 12222 556554 46544443 2220 232
Q ss_pred H--hCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEeeeccccCC
Q 023408 96 Q--THPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGS 173 (282)
Q Consensus 96 ~--~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~vvi~~d~~~~~~~l~~agL~fPlI~KPlvA~Gs 173 (282)
+ ....+.+|.|+.++- +.|+.. +..|-++...+ .-.-|.+ + +... .+... .+|.||+..-+.
T Consensus 477 ~~l~~~~v~iieP~~~~l-lsNKai-lalLw~l~p~h---p~LLpT~--f--~~~~---~l~~~----~yV~KPi~gReG 540 (619)
T 2io8_A 477 DVLLRPEVLVFEPLWTVI-PGNKAI-LPILWSLFPHH---RYLLDTD--F--TVND---ELVKT----GYAVKPIAGRCG 540 (619)
T ss_dssp HHHTCTTCEEESCGGGGT-TTSTTH-HHHHHHHSTTC---TTCCCEE--S--SCCH---HHHHH----CEEEEETTCCTT
T ss_pred HHHHhCCCEEECHHHHHH-hhhHHH-HHHHHHhCCCC---CCCCCee--e--cCCc---ccccC----CEEEccCCCCCC
Confidence 2 356899999999876 788654 33343332111 1112333 1 1111 12222 499999997654
Q ss_pred CCceeEEEEec-cCccC----CC-CCceeEEEeeecc-----ceEEEEEEEcceEE-EEEecC
Q 023408 174 AKSHELSLAYD-QYSLK----KL-EPPLVLQEFVNHG-----GVLFKVYIVGEAIK-VVRRFS 224 (282)
Q Consensus 174 a~SH~Maivf~-~~gL~----~L-~~P~VlQEFINH~-----gvLfKVYVIGd~v~-vv~R~S 224 (282)
+ .|.|+-+ .+-+. .. +.++|.|+|+.-- -.++=+|+||+++. +..|-|
T Consensus 541 ~---nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~~ 600 (619)
T 2io8_A 541 S---NIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_dssp T---TCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred C---CEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEecC
Confidence 4 4777654 22121 11 3589999999853 44577899998654 566765
No 73
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=65.70 E-value=7.2 Score=37.06 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=54.0
Q ss_pred cccCCceEEEccCCCCchHHHHhcCCcc-ceEeeeccccCCC-Cc-------eeEEEEeccCccC----CC---------
Q 023408 134 KVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGSA-KS-------HELSLAYDQYSLK----KL--------- 191 (282)
Q Consensus 134 ~i~vP~~vvi~~d~~~~~~~l~~agL~f-PlI~KPlvA~Gsa-~S-------H~Maivf~~~gL~----~L--------- 191 (282)
.|.+|++.++.+ .++..+.. ..+.| |+++||.+.+|.. +. --+.++.+.+.+. .+
T Consensus 16 GIpvp~~~~~~s-~~ea~~~a--~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q 92 (395)
T 2fp4_B 16 GVKVQRFFVADT-ANEALEAA--KRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQ 92 (395)
T ss_dssp TCCCCCEEEESS-HHHHHHHH--HHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEECTT
T ss_pred CcCCCCeEEECC-HHHHHHHH--HHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHHhhcchhhhc
Confidence 578899988853 22222222 23678 8999999777641 11 3377777655442 11
Q ss_pred -------CCceeEEEeeeccceEEEEEEEcceE--EEEEecC-CCCCCccc
Q 023408 192 -------EPPLVLQEFVNHGGVLFKVYIVGEAI--KVVRRFS-LPDVTKQD 232 (282)
Q Consensus 192 -------~~P~VlQEFINH~gvLfKVYVIGd~v--~vv~R~S-LpN~~~~~ 232 (282)
-..+++|+|++++--+ =|-++.|.. ..+.-.| ...++.++
T Consensus 93 ~g~~g~~~~~vlVEe~v~~~~E~-~v~i~~D~~~~~pvi~~s~~GG~~iE~ 142 (395)
T 2fp4_B 93 TPKEGVKVNKVMVAEALDISRET-YLAILMDRSCNGPVLVGSPQGGVDIEE 142 (395)
T ss_dssp SCTTCEECCCEEEEECCCCSEEE-EEEEEEETTTTEEEEEEESSCSSCHHH
T ss_pred cCCCCCccceEEEEEccCCceeE-EEEEEEccccCceEEEEECCCCcccee
Confidence 1258999999876333 344555543 1333334 55554443
No 74
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=45.53 E-value=9 Score=36.55 Aligned_cols=150 Identities=11% Similarity=0.178 Sum_probs=76.0
Q ss_pred HHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCChHHHHHHHHHHHhCCC-eEEeCchhHHhhhcCHHHHHHHHHhcc
Q 023408 49 LEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPE-VTVLDPPYAIQHLHNRQSMLQCVADMN 127 (282)
Q Consensus 49 l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd~~~~~~lq~y~~~hP~-v~VIDP~~ai~~L~nR~~ml~~l~~l~ 127 (282)
+..+.+++|. +..++.+ -..+|++.......-+. + ...+|. .-.|.=+.....|.....|.+.+....
T Consensus 20 V~~vL~~~g~-w~ev~~~-----~~~~dl~W~~~~~~p~~----~-l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~ 88 (380)
T 3tig_A 20 VAKILLASGQ-WKRLKRD-----NPKFNLMLGERNRLPFG----R-LGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSP 88 (380)
T ss_dssp HHHHHHHTTS-EEECCTT-----CSCCSEEECCSSSCCGG----G-SSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCH
T ss_pred HHHHHHhcCC-eEEeCCC-----CCceeEEEecCCCCCHH----H-hccCCCcceEEeecCCcccccccHHHHHHHHHhh
Confidence 3456677784 3333332 23688887744321110 0 011243 235555666667777777777775521
Q ss_pred ccCCCCcccCCceEEE-ccC----------------------C-CCchHHH---HhcCCccceEeeeccccCCCCceeEE
Q 023408 128 LSNSYGKVDVPRQLVI-ERD----------------------A-SSIPDVV---LKAGLTLPLVAKPLVADGSAKSHELS 180 (282)
Q Consensus 128 ~~~~~~~i~vP~~vvi-~~d----------------------~-~~~~~~l---~~agL~fPlI~KPlvA~Gsa~SH~Ma 180 (282)
....... ..|+..++ ..+ + +++.+.. +..|-.-+||+||...+. ...+.
T Consensus 89 ~~~~~~~-f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~sr---G~GI~ 164 (380)
T 3tig_A 89 ELTETCT-WFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAK---GEGIL 164 (380)
T ss_dssp HHHTTCT-TSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC-------CCB
T ss_pred hcccccC-cCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCC---CCCEE
Confidence 1111112 23444444 111 0 1122222 235788999999976533 23444
Q ss_pred EEeccCccCCC----CCceeEEEeeec------cc--eEEEEEEE
Q 023408 181 LAYDQYSLKKL----EPPLVLQEFVNH------GG--VLFKVYIV 213 (282)
Q Consensus 181 ivf~~~gL~~L----~~P~VlQEFINH------~g--vLfKVYVI 213 (282)
|+-+.+.+.+. ..+.|+|+||.+ +| .-..+||+
T Consensus 165 l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvl 209 (380)
T 3tig_A 165 ISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVL 209 (380)
T ss_dssp CCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEE
T ss_pred EeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEE
Confidence 55444444321 458999999975 43 45577877
No 75
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=43.67 E-value=41 Score=28.29 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=44.4
Q ss_pred cCCCcEEEEEEechhhhhcc---chhHHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccCC-hHHHHHH
Q 023408 25 QQSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTG-KEWRQIL 91 (282)
Q Consensus 25 ~~~~~~~VGy~l~~KK~~sf---~~~~l~~~~~~~Gi~fV~ID~~~pL~~Q---------gpfDvILHKltd-~~~~~~l 91 (282)
..++..+||+.++.-. ..| ...++...|+++|+.++-.+.+...+.| ..+|.||==-.+ ......+
T Consensus 4 ~~~~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~ 82 (293)
T 3l6u_A 4 TSPKRNIVGFTIVNDK-HEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAI 82 (293)
T ss_dssp -----CEEEEEESCSC-SHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHH
T ss_pred CCCCCcEEEEEEecCC-cHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHH
Confidence 3456789999997643 122 2334667889999999888765433222 356754432222 2223445
Q ss_pred HHHHHhCCCeEEeCc
Q 023408 92 EEYRQTHPEVTVLDP 106 (282)
Q Consensus 92 q~y~~~hP~v~VIDP 106 (282)
++..+..-.++++|.
T Consensus 83 ~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 83 EEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHTTCCEEEESS
T ss_pred HHHHHcCCCEEEecC
Confidence 555555556777764
No 76
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=41.22 E-value=60 Score=27.10 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=42.5
Q ss_pred CCcEEEEEEechhhhhcc---chhHHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccCChHHHHHHHHH
Q 023408 27 SKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTGKEWRQILEEY 94 (282)
Q Consensus 27 ~~~~~VGy~l~~KK~~sf---~~~~l~~~~~~~Gi~fV~ID~~~pL~~Q---------gpfDvILHKltd~~~~~~lq~y 94 (282)
++..+||+.++.-. ..| ...++...|+++|+.++-.+.+ ..+.| ..+|.|| +....-...++.
T Consensus 3 ~~~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI--~~~~~~~~~~~~- 77 (280)
T 3gyb_A 3 LRTQLIAVLIDDYS-NPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII--IAQDIPDFTVPD- 77 (280)
T ss_dssp -CCCEEEEEESCTT-SGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE--EESCC--------
T ss_pred CccCEEEEEeCCCC-ChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE--ecCCCChhhHhh-
Confidence 45678999997642 222 2334566889999999988887 44433 5799999 443222233333
Q ss_pred HHhCCCeEEeCch
Q 023408 95 RQTHPEVTVLDPP 107 (282)
Q Consensus 95 ~~~hP~v~VIDP~ 107 (282)
..=.++++|-.
T Consensus 78 --~~iPvV~~~~~ 88 (280)
T 3gyb_A 78 --SLPPFVIAGTR 88 (280)
T ss_dssp ---CCCEEEESCC
T ss_pred --cCCCEEEECCC
Confidence 33356777643
No 77
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=39.12 E-value=50 Score=30.45 Aligned_cols=91 Identities=9% Similarity=0.096 Sum_probs=55.3
Q ss_pred cCCCcEEEEEEechhh-hhccch---hHHHhHHHhcC--cEEEEecCCCCCCC---------CCCceEEEeccCChHHHH
Q 023408 25 QQSKLVVVGYALTSKK-TKSFLQ---PKLEGLARNKG--ILFVAIDQNRPLSD---------QGPFDIVLHKLTGKEWRQ 89 (282)
Q Consensus 25 ~~~~~~~VGy~l~~KK-~~sf~~---~~l~~~~~~~G--i~fV~ID~~~pL~~---------QgpfDvILHKltd~~~~~ 89 (282)
...+.++||+..+-.. -++|++ .++..++++.| +++.-++....-++ +..+|+|+= +.-.+..
T Consensus 22 ~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~--~g~~~~~ 99 (356)
T 3s99_A 22 MAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFT--TSFGYMD 99 (356)
T ss_dssp ----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEE--CSGGGHH
T ss_pred ccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEE--CCHHHHH
Confidence 3456799999996433 245654 45667888889 88877765433211 135898873 4555566
Q ss_pred HHHHHHHhCCC--eEEeCc---hhHHhhhcCHH
Q 023408 90 ILEEYRQTHPE--VTVLDP---PYAIQHLHNRQ 117 (282)
Q Consensus 90 ~lq~y~~~hP~--v~VIDP---~~ai~~L~nR~ 117 (282)
.+.+..++||+ ++++|- ..++..+.-|.
T Consensus 100 ~~~~vA~~~Pdv~fv~id~~~~~~Nv~sv~~~~ 132 (356)
T 3s99_A 100 PTVKVAKKFPDVKFEHATGYKTADNMSAYNARF 132 (356)
T ss_dssp HHHHHHTTCTTSEEEEESCCCCBTTEEEEEECH
T ss_pred HHHHHHHHCCCCEEEEEeccccCCcEEEEEech
Confidence 78888899997 445654 34555554443
No 78
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=35.45 E-value=83 Score=26.28 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=47.7
Q ss_pred CCcEEEEEEechhhhhcc---chhHHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccCC-hHHHHHHHH
Q 023408 27 SKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTG-KEWRQILEE 93 (282)
Q Consensus 27 ~~~~~VGy~l~~KK~~sf---~~~~l~~~~~~~Gi~fV~ID~~~pL~~Q---------gpfDvILHKltd-~~~~~~lq~ 93 (282)
.+..+||+.++.-- ..| ...++...|+++|+.++-.+.....+.| ..+|.||==-.+ ......+++
T Consensus 3 ~~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~ 81 (291)
T 3l49_A 3 LEGKTIGITAIGTD-HDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQK 81 (291)
T ss_dssp CTTCEEEEEESCCS-SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCC-ChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH
Confidence 34678999998543 222 2345667899999999888765543222 357766633333 234445555
Q ss_pred HHHhCCCeEEeCc
Q 023408 94 YRQTHPEVTVLDP 106 (282)
Q Consensus 94 y~~~hP~v~VIDP 106 (282)
..+..-.++++|.
T Consensus 82 ~~~~~iPvV~~~~ 94 (291)
T 3l49_A 82 INDAGIPLFTVDT 94 (291)
T ss_dssp HHHTTCCEEEESC
T ss_pred HHHCCCcEEEecC
Confidence 6555556777764
No 79
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=32.80 E-value=1.8e+02 Score=24.94 Aligned_cols=98 Identities=6% Similarity=0.082 Sum_probs=50.2
Q ss_pred HHHHHHhhHhhhccCCccc--cCCCcEEEEEEechhhhhcc---chhHHHhHHHhcCcEEEEe--cCC--CCCCC-----
Q 023408 6 EEIEEQTREEELLSFPQTQ--QQSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAI--DQN--RPLSD----- 71 (282)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~--~~~~~~~VGy~l~~KK~~sf---~~~~l~~~~~~~Gi~fV~I--D~~--~pL~~----- 71 (282)
+.|.+-++|. +--|+.. ...+..+||+.++..-...| ...++...|+++|+.+.-. +.+ ...+.
T Consensus 20 ~rV~~aa~el--gY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i 97 (342)
T 1jx6_A 20 NLTNALSEAV--RAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSL 97 (342)
T ss_dssp HHHHHHHHHH--HSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHHHh--cCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHH
Confidence 3444444443 3345443 35567899999975111222 2335666888899876544 333 12111
Q ss_pred ----CCCceEEEeccCChH-HHHHHHHHHHh-CCCeEEeCc
Q 023408 72 ----QGPFDIVLHKLTGKE-WRQILEEYRQT-HPEVTVLDP 106 (282)
Q Consensus 72 ----QgpfDvILHKltd~~-~~~~lq~y~~~-hP~v~VIDP 106 (282)
+..+|.||- ..+.. ....+++..+. .|-|+++|-
T Consensus 98 ~~l~~~~vdgiIi-~~~~~~~~~~~~~~~~~~ip~V~~~~~ 137 (342)
T 1jx6_A 98 MEALKSKSDYLIF-TLDTTRHRKFVEHVLDSTNTKLILQNI 137 (342)
T ss_dssp HHHHHTTCSEEEE-CCSSSTTHHHHHHHHHHCSCEEEEETC
T ss_pred HHHHhcCCCEEEE-eCChHhHHHHHHHHHHcCCCEEEEecC
Confidence 146887776 55432 23344444444 454445463
No 80
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=32.03 E-value=1.2e+02 Score=22.81 Aligned_cols=79 Identities=25% Similarity=0.296 Sum_probs=46.6
Q ss_pred cchhHHHhHHHhcCcEE--EEecCCCCCCC-CCCceEEEeccCChHHHHHHHHHHH-hCCCeEEeCchhHHhhhcCHHHH
Q 023408 44 FLQPKLEGLARNKGILF--VAIDQNRPLSD-QGPFDIVLHKLTGKEWRQILEEYRQ-THPEVTVLDPPYAIQHLHNRQSM 119 (282)
Q Consensus 44 f~~~~l~~~~~~~Gi~f--V~ID~~~pL~~-QgpfDvILHKltd~~~~~~lq~y~~-~hP~v~VIDP~~ai~~L~nR~~m 119 (282)
+....+...++++|+++ -..+... +++ ...+|+||-=..=......+++... .+-.|++|+|.... .+|...+
T Consensus 19 ll~~kl~~~~~~~gi~~~i~~~~~~~-~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv~~I~~~~y~--~~d~~~v 95 (109)
T 2l2q_A 19 MLVQRIEKYAKSKNINATIEAIAETR-LSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINTIDYG--TMNGEKV 95 (109)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECSTT-HHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEECCHHHHH--HTCHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEEecHHH-HHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCEEEEChHHhc--cCCHHHH
Confidence 44455667788888753 3333332 111 2468998754332222444544433 35578899998775 5788877
Q ss_pred HHHHHh
Q 023408 120 LQCVAD 125 (282)
Q Consensus 120 l~~l~~ 125 (282)
++.+.+
T Consensus 96 l~~i~~ 101 (109)
T 2l2q_A 96 LQLAIN 101 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 81
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=31.29 E-value=92 Score=25.16 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=40.8
Q ss_pred cEEEEEEechhhhhccchhHHHh----HHHhcCcEEEEecCCCCCCCCCCceEEE-----eccCChHHHHHHHHHHHh-C
Q 023408 29 LVVVGYALTSKKTKSFLQPKLEG----LARNKGILFVAIDQNRPLSDQGPFDIVL-----HKLTGKEWRQILEEYRQT-H 98 (282)
Q Consensus 29 ~~~VGy~l~~KK~~sf~~~~l~~----~~~~~Gi~fV~ID~~~pL~~QgpfDvIL-----HKltd~~~~~~lq~y~~~-h 98 (282)
..++|.=+++.-.+.... .+.. -....++.|+.-|+...-...+.||+|+ |-+.+..+.+.+++..+. .
T Consensus 54 ~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk 132 (219)
T 3jwg_A 54 EQITGVDVSYSVLERAKD-RLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTR 132 (219)
T ss_dssp CEEEEEESCHHHHHHHHH-HHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHH-HHHhhccccccCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 578888877654332211 1100 0011279999999865444457899997 334444445555544322 3
Q ss_pred CC-eEEeCc
Q 023408 99 PE-VTVLDP 106 (282)
Q Consensus 99 P~-v~VIDP 106 (282)
|+ +++..|
T Consensus 133 pgG~~i~~~ 141 (219)
T 3jwg_A 133 PQTVIVSTP 141 (219)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEcc
Confidence 44 444443
No 82
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=28.85 E-value=60 Score=27.72 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=41.0
Q ss_pred cEEEEEEechhhhhcc---chhHHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccCCh-HHHHHHHHHH
Q 023408 29 LVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTGK-EWRQILEEYR 95 (282)
Q Consensus 29 ~~~VGy~l~~KK~~sf---~~~~l~~~~~~~Gi~fV~ID~~~pL~~Q---------gpfDvILHKltd~-~~~~~lq~y~ 95 (282)
..+||+.++.-- ..| ...++...|+++|+.++-.+.....+.| ..+|.||=--.+. .....+++..
T Consensus 2 ~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (313)
T 3m9w_A 2 EVKIGMAIDDLR-LERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK 80 (313)
T ss_dssp -CEEEEEESCCS-SSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHH
T ss_pred CcEEEEEeCCCC-ChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 467898887532 122 2335667888899998877765432221 3566554333222 2233444444
Q ss_pred HhCCCeEEeCc
Q 023408 96 QTHPEVTVLDP 106 (282)
Q Consensus 96 ~~hP~v~VIDP 106 (282)
+..-.++++|-
T Consensus 81 ~~~iPvV~~~~ 91 (313)
T 3m9w_A 81 QEGIKVLAYDR 91 (313)
T ss_dssp TTTCEEEEESS
T ss_pred HCCCeEEEECC
Confidence 44445555553
No 83
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=28.31 E-value=1.2e+02 Score=25.33 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=44.2
Q ss_pred CCCcEEEEEEechhhh--hccchhHHHhHHHhcCcEEEEecCCCCCCC---------CCCceEEEeccCChHHHHHHHHH
Q 023408 26 QSKLVVVGYALTSKKT--KSFLQPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVLHKLTGKEWRQILEEY 94 (282)
Q Consensus 26 ~~~~~~VGy~l~~KK~--~sf~~~~l~~~~~~~Gi~fV~ID~~~pL~~---------QgpfDvILHKltd~~~~~~lq~y 94 (282)
.++..+||+.++.-.- -.-...++...|+++|+.++-.+.....+. +..+|.||==-.+. ...++..
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l 81 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQEI 81 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHH
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHH
Confidence 4567899999986431 111233566788999999988776543221 14566444322222 3344444
Q ss_pred HHhCCCeEEeCc
Q 023408 95 RQTHPEVTVLDP 106 (282)
Q Consensus 95 ~~~hP~v~VIDP 106 (282)
.+..=.++++|.
T Consensus 82 ~~~~iPvV~i~~ 93 (276)
T 3jy6_A 82 LHQQMPVVSVDR 93 (276)
T ss_dssp HTTSSCEEEESC
T ss_pred HHCCCCEEEEec
Confidence 444445666664
No 84
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=28.22 E-value=1.1e+02 Score=24.27 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=28.2
Q ss_pred cEEEEEEechhhhhccchhHHHhHHHhc---CcEEEEecCCCCCCCCCCceEEEe
Q 023408 29 LVVVGYALTSKKTKSFLQPKLEGLARNK---GILFVAIDQNRPLSDQGPFDIVLH 80 (282)
Q Consensus 29 ~~~VGy~l~~KK~~sf~~~~l~~~~~~~---Gi~fV~ID~~~pL~~QgpfDvILH 80 (282)
..++|.=+++. ++..|+++ ++.|+..|+... ...+.||+|+-
T Consensus 69 ~~v~~~D~s~~---------~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~ 113 (218)
T 3ou2_A 69 DRVTALDGSAE---------MIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFF 113 (218)
T ss_dssp SEEEEEESCHH---------HHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEE
T ss_pred CeEEEEeCCHH---------HHHHHHhcCCCCeEEEecccccC-CCCCceeEEEE
Confidence 35667766554 33344433 489999999776 55678999983
No 85
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=28.13 E-value=1.2e+02 Score=25.52 Aligned_cols=76 Identities=9% Similarity=0.014 Sum_probs=47.0
Q ss_pred cEEEEEEechhhhh--ccchhHHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccCCh-HHHHHHHHHHH
Q 023408 29 LVVVGYALTSKKTK--SFLQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTGK-EWRQILEEYRQ 96 (282)
Q Consensus 29 ~~~VGy~l~~KK~~--sf~~~~l~~~~~~~Gi~fV~ID~~~pL~~Q---------gpfDvILHKltd~-~~~~~lq~y~~ 96 (282)
.++||+.++.---. .-...++...|+++|+.++-.+.. ..+.| ..+|.||=--.+. .....+++..+
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ 80 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG 80 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHH
Confidence 57899998764311 112335667889999999888763 22211 3588666444443 33445666666
Q ss_pred hCCCeEEeC
Q 023408 97 THPEVTVLD 105 (282)
Q Consensus 97 ~hP~v~VID 105 (282)
..-.|+++|
T Consensus 81 ~~iPvV~~~ 89 (306)
T 8abp_A 81 YDMKVIAVD 89 (306)
T ss_dssp TTCEEEEES
T ss_pred CCCcEEEeC
Confidence 777888888
No 86
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=26.51 E-value=81 Score=28.45 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=32.0
Q ss_pred CcEEEEecCCCC---CCCCCCceEEE-----eccCChHHHHHHHHHHHh---CCCeEEeCch
Q 023408 57 GILFVAIDQNRP---LSDQGPFDIVL-----HKLTGKEWRQILEEYRQT---HPEVTVLDPP 107 (282)
Q Consensus 57 Gi~fV~ID~~~p---L~~QgpfDvIL-----HKltd~~~~~~lq~y~~~---hP~v~VIDP~ 107 (282)
++.|+.-|+..+ +. +.||+|+ |-+.+....+.|++..+. .--++|+|+.
T Consensus 230 ~v~~~~~d~~~~~~~~p--~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 230 RIHGHGANLLDRDVPFP--TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp GEEEEECCCCSSSCCCC--CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred ceEEEEccccccCCCCC--CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence 589999999773 54 6799875 444555555556655443 3347777764
No 87
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=26.46 E-value=37 Score=27.87 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=19.5
Q ss_pred CcEEEEecCCCCCCCCCCceEEEec
Q 023408 57 GILFVAIDQNRPLSDQGPFDIVLHK 81 (282)
Q Consensus 57 Gi~fV~ID~~~pL~~QgpfDvILHK 81 (282)
++.++..|....+...++||+|+--
T Consensus 117 ~v~~~~~d~~~~~~~~~~fD~v~~~ 141 (231)
T 1vbf_A 117 NIKLILGDGTLGYEEEKPYDRVVVW 141 (231)
T ss_dssp SEEEEESCGGGCCGGGCCEEEEEES
T ss_pred CeEEEECCcccccccCCCccEEEEC
Confidence 6889999987766566789988743
No 88
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=25.41 E-value=74 Score=25.96 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=24.3
Q ss_pred HHHhHHHhcCcEEEEecCCCCCCCCCCceEEEec
Q 023408 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHK 81 (282)
Q Consensus 48 ~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHK 81 (282)
.++..|+++++.++..|+...-...+.||+|+--
T Consensus 76 ~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 76 RMAEIARKRGVFVLKGTAENLPLKDESFDFALMV 109 (219)
T ss_dssp HHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred HHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEc
Confidence 4556677779999999986532234689999844
No 89
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=25.15 E-value=2.6e+02 Score=22.18 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=23.5
Q ss_pred CcEEEEEEechhhhh----ccchhH--HHhHHHhcCcEEEE
Q 023408 28 KLVVVGYALTSKKTK----SFLQPK--LEGLARNKGILFVA 62 (282)
Q Consensus 28 ~~~~VGy~l~~KK~~----sf~~~~--l~~~~~~~Gi~fV~ 62 (282)
+..+++|+=...+.+ ++..+. +..+|.++|+.++.
T Consensus 4 ~~r~~~Y~RvSt~~q~~~~sl~~Q~~~l~~~a~~~g~~i~~ 44 (167)
T 3guv_A 4 KIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVG 44 (167)
T ss_dssp CCEEEEEEECSSCHHHHGGGHHHHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEEEEECCcccccCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 457899976655544 554433 55799999998753
No 90
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=24.10 E-value=60 Score=33.56 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=37.9
Q ss_pred hhccchhHHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCC------hHHHHHHHHHHHhCCCeEE
Q 023408 41 TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG------KEWRQILEEYRQTHPEVTV 103 (282)
Q Consensus 41 ~~sf~~~~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd------~~~~~~lq~y~~~hP~v~V 103 (282)
.+.++...+..+.++.||+++++|+++.+.+-+--..==.+... .-+-+.+++..++||++++
T Consensus 456 vr~~i~~~l~~ll~~~GIDy~K~D~nr~i~~~~~~~~~~~~q~~~~~~y~~g~y~ll~~l~~~~P~v~i 524 (745)
T 3mi6_A 456 VVDYLFKLMSQMIESANLDYIKWDMNRYATEMFSSRLTSDQQLELPHRYILGVYQLYARLTQAYPNVLF 524 (745)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEECCCSCCCSCCCSSSCGGGGGGHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCcccCCCcCccccccHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence 44555555556778899999999999988643310000000000 0123457788899999875
No 91
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=23.92 E-value=2.5e+02 Score=21.56 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=49.0
Q ss_pred ccchhHHHhHHHhcCcEEEE--ecCCCCCCCC-CCceEEEeccCChHHH---HHHHHHHHh-CCCeEEeCchhHHhhhcC
Q 023408 43 SFLQPKLEGLARNKGILFVA--IDQNRPLSDQ-GPFDIVLHKLTGKEWR---QILEEYRQT-HPEVTVLDPPYAIQHLHN 115 (282)
Q Consensus 43 sf~~~~l~~~~~~~Gi~fV~--ID~~~pL~~Q-gpfDvILHKltd~~~~---~~lq~y~~~-hP~v~VIDP~~ai~~L~n 115 (282)
++.-.++...|+++|+++-- ..... +.+. ..+||||= +.+.+ ..+++..+. +=.|.+|||-+-..-.+|
T Consensus 20 sllv~km~~~a~~~gi~v~i~a~~~~~-~~~~~~~~DvvLL---gPQV~y~~~~ik~~~~~~~ipV~vI~~~~Yg~~~~~ 95 (108)
T 3nbm_A 20 AQLANAINEGANLTEVRVIANSGAYGA-HYDIMGVYDLIIL---APQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKS 95 (108)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEETTS-CTTTGGGCSEEEE---CGGGGGGHHHHHHHHTTTTCEEEECCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCceEEEEcchHH-HHhhccCCCEEEE---ChHHHHHHHHHHHHhhhcCCcEEEeCHHHhhhhhCC
Confidence 44445666788899987533 33333 3333 36999874 44333 445554443 346889999887766788
Q ss_pred HHHHHHHHH
Q 023408 116 RQSMLQCVA 124 (282)
Q Consensus 116 R~~ml~~l~ 124 (282)
=...++.+.
T Consensus 96 g~~vl~~~~ 104 (108)
T 3nbm_A 96 PSKALQFVL 104 (108)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777554
No 92
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=23.68 E-value=1.2e+02 Score=25.72 Aligned_cols=79 Identities=6% Similarity=-0.053 Sum_probs=43.9
Q ss_pred CcEEEEEEechhh--hhccchhHHHhHHHhcCcEEEEecCCC--CCCC---------CCCceEEEeccCC-hHHHHHHHH
Q 023408 28 KLVVVGYALTSKK--TKSFLQPKLEGLARNKGILFVAIDQNR--PLSD---------QGPFDIVLHKLTG-KEWRQILEE 93 (282)
Q Consensus 28 ~~~~VGy~l~~KK--~~sf~~~~l~~~~~~~Gi~fV~ID~~~--pL~~---------QgpfDvILHKltd-~~~~~~lq~ 93 (282)
.+++||+.++... .-.-...++...|+++|+.++-.+.+. ..+. +..+|.||==-.+ ..+...+++
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~ 81 (297)
T 3rot_A 2 VRDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQR 81 (297)
T ss_dssp -CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHH
T ss_pred ceEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 3578999887652 111123456678899999998877541 1111 1346755422222 233445555
Q ss_pred HHHhCCCeEEeCc
Q 023408 94 YRQTHPEVTVLDP 106 (282)
Q Consensus 94 y~~~hP~v~VIDP 106 (282)
..+..=.|+.+|.
T Consensus 82 ~~~~giPvV~~~~ 94 (297)
T 3rot_A 82 ANKLNIPVIAVDT 94 (297)
T ss_dssp HHHHTCCEEEESC
T ss_pred HHHCCCCEEEEcC
Confidence 5555556666663
No 93
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=22.81 E-value=2.2e+02 Score=24.67 Aligned_cols=95 Identities=8% Similarity=-0.026 Sum_probs=51.3
Q ss_pred HHHHHHhhHhhhccCCccc----cCCCcEEEEEEechhhhhccc---hhHHHhHHHhcCcEEEEecCCCCCCC-------
Q 023408 6 EEIEEQTREEELLSFPQTQ----QQSKLVVVGYALTSKKTKSFL---QPKLEGLARNKGILFVAIDQNRPLSD------- 71 (282)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~----~~~~~~~VGy~l~~KK~~sf~---~~~l~~~~~~~Gi~fV~ID~~~pL~~------- 71 (282)
+.|.+-++| ++-.|+.. ...+..+||+.++.-. ..|. ..++...|+++|+.++-.+.+...+.
T Consensus 43 ~rV~~~~~~--lgY~pn~~a~~l~~~~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~ 119 (344)
T 3kjx_A 43 ARVLAAAKE--LGYVPNKIAGALASNRVNLVAVIIPSLS-NMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYE 119 (344)
T ss_dssp HHHHHHHHH--HTCCCCCCCSCSTTSCCSEEEEEESCSS-SSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCCCHHHHHhhcCCCCEEEEEeCCCC-cHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHH
Confidence 334444444 34445443 3456789999997642 2222 23455688889999987666543222
Q ss_pred --CCCceEEEeccCChHHHHHHHHHHHhCCCeEEe
Q 023408 72 --QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (282)
Q Consensus 72 --QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI 104 (282)
+..+|-||==-++... ..++...+..-.++++
T Consensus 120 l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 120 MLSWRPSGVIIAGLEHSE-AARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHTTCCSEEEEECSCCCH-HHHHHHHHCSSCEEEE
T ss_pred HHhCCCCEEEEECCCCCH-HHHHHHHhCCCCEEEE
Confidence 2467855532222111 3344444555567777
No 94
>2plc_A PI-PLC, phosphatidylinositol-specific phospholipase C; hydrolase, phospholipid degradation, virulence factor of human pathogen; 2.00A {Listeria monocytogenes} SCOP: c.1.18.2 PDB: 1aod_A*
Probab=22.63 E-value=77 Score=28.14 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=32.4
Q ss_pred cCcEEEEecCCCCCCCCCCceEEEeccCC-----hHHHHHHHHHHHhCC-CeEEeCc
Q 023408 56 KGILFVAIDQNRPLSDQGPFDIVLHKLTG-----KEWRQILEEYRQTHP-EVTVLDP 106 (282)
Q Consensus 56 ~Gi~fV~ID~~~pL~~QgpfDvILHKltd-----~~~~~~lq~y~~~hP-~v~VIDP 106 (282)
.|+.+.-|+.. +.+ .+.|-... .++.+.+.+|.++|| ++++|+=
T Consensus 56 ~GvR~ldlr~~------~~~-~~~H~~~~~~~~~~~~L~~i~~fL~~~P~EvVil~~ 105 (274)
T 2plc_A 56 AGIRYIDIRAK------DNL-NIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRL 105 (274)
T ss_dssp TTCCEEEEEEC------TTS-EEEETTEEEEEEHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred hCCcEEEEEEC------CcE-EEEEcCCCCCCCHHHHHHHHHHHHHhCCCceEEEEE
Confidence 59999999887 222 45665542 367888999999999 8888753
No 95
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=22.18 E-value=50 Score=27.50 Aligned_cols=24 Identities=13% Similarity=0.458 Sum_probs=19.5
Q ss_pred CcEEEEecCCCCCCCCCCceEEEe
Q 023408 57 GILFVAIDQNRPLSDQGPFDIVLH 80 (282)
Q Consensus 57 Gi~fV~ID~~~pL~~QgpfDvILH 80 (282)
++.++.-|...++.+.++||+|+=
T Consensus 141 ~v~~~~~d~~~~~~~~~~fD~Ii~ 164 (235)
T 1jg1_A 141 NVHVILGDGSKGFPPKAPYDVIIV 164 (235)
T ss_dssp SEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CcEEEECCcccCCCCCCCccEEEE
Confidence 478888898777777778999983
No 96
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=21.72 E-value=1.7e+02 Score=25.17 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=45.6
Q ss_pred cCCCcEEEEEEechhh-hhcc---chhHHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccCChHHHHHH
Q 023408 25 QQSKLVVVGYALTSKK-TKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTGKEWRQIL 91 (282)
Q Consensus 25 ~~~~~~~VGy~l~~KK-~~sf---~~~~l~~~~~~~Gi~fV~ID~~~pL~~Q---------gpfDvILHKltd~~~~~~l 91 (282)
...+..+||+.++..- ...| ...++...|+++|+.++-.+.+...+.| ..+|-||==-.+... ..+
T Consensus 57 ~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~ 135 (338)
T 3dbi_A 57 SAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-DEI 135 (338)
T ss_dssp ---CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCH-HHH
T ss_pred hhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHH
Confidence 3456789999998621 1122 2234566889999999888755433222 467865542222221 334
Q ss_pred HHHHHhCC-CeEEeCc
Q 023408 92 EEYRQTHP-EVTVLDP 106 (282)
Q Consensus 92 q~y~~~hP-~v~VIDP 106 (282)
.++.++++ .++++|.
T Consensus 136 ~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 136 DDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHCSSCEEEESS
T ss_pred HHHHHcCCCCEEEEcC
Confidence 45555543 6888874
No 97
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=21.12 E-value=2e+02 Score=24.65 Aligned_cols=79 Identities=18% Similarity=0.133 Sum_probs=43.4
Q ss_pred CCCcEEEEEEechhhhhccc---hhHHHhHHHhc-CcEEEEecCCCCCCC---------CCCceEEEeccCChH-HHHHH
Q 023408 26 QSKLVVVGYALTSKKTKSFL---QPKLEGLARNK-GILFVAIDQNRPLSD---------QGPFDIVLHKLTGKE-WRQIL 91 (282)
Q Consensus 26 ~~~~~~VGy~l~~KK~~sf~---~~~l~~~~~~~-Gi~fV~ID~~~pL~~---------QgpfDvILHKltd~~-~~~~l 91 (282)
+++..+||+.++. ...|. ..++...|+++ |+.++-.+.....+. +..+|.||==-.+.. ....+
T Consensus 3 ~~~~~~Igvi~~~--~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 3 DTPHFRIGVAQCS--DDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp ---CCEEEEEESC--CSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHH
T ss_pred CCCCeEEEEEecC--CCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 4467899998876 33332 23455677888 999887765433221 145775553333322 23445
Q ss_pred HHHHHhCCCeEEeCc
Q 023408 92 EEYRQTHPEVTVLDP 106 (282)
Q Consensus 92 q~y~~~hP~v~VIDP 106 (282)
+...+..-.++++|.
T Consensus 81 ~~~~~~~iPvV~~~~ 95 (325)
T 2x7x_A 81 EEAYQKGIPVILVDR 95 (325)
T ss_dssp HHHHHTTCCEEEESS
T ss_pred HHHHHCCCeEEEeCC
Confidence 555455556777774
No 98
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=20.78 E-value=75 Score=25.77 Aligned_cols=78 Identities=10% Similarity=0.075 Sum_probs=40.0
Q ss_pred cEEEEEEechhhhhccchhHHHh----HHHhcCcEEEEecCCCCCCCCCCceEEE-----eccCChHHHHHHHHHHH-hC
Q 023408 29 LVVVGYALTSKKTKSFLQPKLEG----LARNKGILFVAIDQNRPLSDQGPFDIVL-----HKLTGKEWRQILEEYRQ-TH 98 (282)
Q Consensus 29 ~~~VGy~l~~KK~~sf~~~~l~~----~~~~~Gi~fV~ID~~~pL~~QgpfDvIL-----HKltd~~~~~~lq~y~~-~h 98 (282)
..++|.=+++.-.+.... .+.. .....++.|+.-|+...-...+.||+|+ |-+.+..+.+.+++..+ -.
T Consensus 54 ~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk 132 (217)
T 3jwh_A 54 EQITGVDVSYRSLEIAQE-RLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQ 132 (217)
T ss_dssp SEEEEEESCHHHHHHHHH-HHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHH-HHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcC
Confidence 477888777653332111 1100 0011269999999865444457899987 33344444444544432 23
Q ss_pred C-CeEEeCch
Q 023408 99 P-EVTVLDPP 107 (282)
Q Consensus 99 P-~v~VIDP~ 107 (282)
| .++++-|.
T Consensus 133 pgG~li~~~~ 142 (217)
T 3jwh_A 133 PKIVIVTTPN 142 (217)
T ss_dssp CSEEEEEEEB
T ss_pred CCEEEEEccC
Confidence 4 34444443
No 99
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=20.71 E-value=1.1e+02 Score=31.22 Aligned_cols=63 Identities=13% Similarity=0.286 Sum_probs=37.3
Q ss_pred hhccchhHHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCCh------HHHHHHHHHHHhCCCeEE
Q 023408 41 TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGK------EWRQILEEYRQTHPEVTV 103 (282)
Q Consensus 41 ~~sf~~~~l~~~~~~~Gi~fV~ID~~~pL~~QgpfDvILHKltd~------~~~~~lq~y~~~hP~v~V 103 (282)
.+.++...+..+.++.||+++++|++.++..-+.-..==+.-... .+.+.+++-.++||++++
T Consensus 455 v~~y~~~~i~~ll~~~GidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~d~L~~~~P~i~i 523 (729)
T 4fnq_A 455 VCDYIIETISNVLASAPITYVKWDMNRHMTEIGSSALPPERQRETAHRYMLGLYRVMDEMTSRFPHILF 523 (729)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEEECCCCCCSCCCTTSCGGGGGGHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEcCCCCCCcCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHCCCcEE
Confidence 444555556677788999999999998876543111000011110 122345566788999875
No 100
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=20.48 E-value=1.1e+02 Score=21.83 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=17.1
Q ss_pred ccceEEEEE-EEcceEEEEEecCC
Q 023408 203 HGGVLFKVY-IVGEAIKVVRRFSL 225 (282)
Q Consensus 203 H~gvLfKVY-VIGd~v~vv~R~SL 225 (282)
|.---||+| ||||++.++.-+-.
T Consensus 7 hamdtyklfivigdrvvvt~tkav 30 (65)
T 1mhx_A 7 HAMDTYKLFIVIGDRVVVVTTEAV 30 (65)
T ss_dssp CCCEEEEEEEEETTEEEEEEEEES
T ss_pred cccceeeEEEEEcCEEEEEEeehh
Confidence 445568887 68999999876654
No 101
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=20.42 E-value=1.8e+02 Score=24.04 Aligned_cols=78 Identities=9% Similarity=0.067 Sum_probs=45.4
Q ss_pred CcEEEEEEechhhhhcc---chhHHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccCCh----HHHHHH
Q 023408 28 KLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTGK----EWRQIL 91 (282)
Q Consensus 28 ~~~~VGy~l~~KK~~sf---~~~~l~~~~~~~Gi~fV~ID~~~pL~~Q---------gpfDvILHKltd~----~~~~~l 91 (282)
+..+||+.++.-. ..| ...++...|+++|+.++-.+.....+.| ..+|.||==-.+. .....+
T Consensus 14 ~~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 14 SNKTIGVLTTYIS-DYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp -CCEEEEEESCSS-STTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred cCceEEEEeCCCC-chHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHH
Confidence 3489999988643 112 2334666889999999888766443221 4677655433221 223445
Q ss_pred HHHHHhCCCeEEeCc
Q 023408 92 EEYRQTHPEVTVLDP 106 (282)
Q Consensus 92 q~y~~~hP~v~VIDP 106 (282)
++..+..-.++++|.
T Consensus 93 ~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 93 LNLEKNGIPFAMINA 107 (298)
T ss_dssp HHHHHTTCCEEEESS
T ss_pred HHHHhcCCCEEEEec
Confidence 555555556777764
Done!