RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023408
(282 letters)
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 246 bits (630), Expect = 7e-81
Identities = 78/256 (30%), Positives = 124/256 (48%), Gaps = 14/256 (5%)
Query: 24 QQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT 83
Q K VGY L+ KK K L R +G+ V ++ +RP+ +QGP D+++HKLT
Sbjct: 13 QTFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLT 72
Query: 84 ------------GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNS 131
E +EY HPE VLDP AI+ L +R + + +
Sbjct: 73 DVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYME 132
Query: 132 YGKVDVPRQLVIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK 190
++ P + + ++ K GLT P + K VA G+ SHE+++ ++Q L
Sbjct: 133 DDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNA 191
Query: 191 LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA 250
++PP V+Q F+NH VL+KV++VGE+ VV+R SL + + + F VS +
Sbjct: 192 IQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPES 251
Query: 251 SADDADLDPCVAVCTK 266
S+ +LD V +
Sbjct: 252 SSVLTELDKIEGVFER 267
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 224 bits (571), Expect = 2e-72
Identities = 38/254 (14%), Positives = 92/254 (36%), Gaps = 16/254 (6%)
Query: 23 TQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKL 82
+ + V + L K K+ + + + L D+ P I+ +
Sbjct: 5 SMTTKQTVSLFIWLPESKQKTLFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRT 64
Query: 83 TGK-EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL 141
+ + +Y + HP+V L+ + +R+ + + + +P
Sbjct: 65 HPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALLIK-------NNIPIPNSF 117
Query: 142 VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFV 201
++ + ++ L LP + KP A G+ +H++ + +Q + + P + Q ++
Sbjct: 118 SVKSKEE-VIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYI 176
Query: 202 NHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST-------SAGVFRFPRVSCAAASADD 254
NH + KV+ +G +K R SLP+V + + + + +P +
Sbjct: 177 NHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIE 236
Query: 255 ADLDPCVAVCTKCS 268
+ + +
Sbjct: 237 NSANRFGSKILEDP 250
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 9e-07
Identities = 43/303 (14%), Positives = 90/303 (29%), Gaps = 79/303 (26%)
Query: 4 MKEEIEEQTREEELLSFPQTQQQSKL-----VVVGYALTSKKTKSFLQPKLEGLARNKGI 58
+ I+ + R+ +++ +Q+ +L V Y ++ + L+ L L K +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 59 LF----------VAID--QNRPLSDQGPFDIVLHKLT-GK--EWRQILEE----YRQTHP 99
L VA+D + + + F I L +LE Q P
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 100 EVTVL-----DPPYAIQHLHNRQSMLQC-------------VADMNLSNSYGKVDVP-RQ 140
T + I + L V + N++ ++ +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF---NLSCKI 268
Query: 141 LVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEP------P 194
L+ R + D + A T + + + L L Y + L P
Sbjct: 269 LLTTRFK-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 195 LV-------LQEFVNHGGVLFKVY--IVGEAIKVVRRFSL----PDVTKQ---DLSTSAG 238
+++ + + + + + + + SL P ++ LS
Sbjct: 328 RRLSIIAESIRDGLAT----WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---- 379
Query: 239 VFR 241
VF
Sbjct: 380 VFP 382
Score = 36.8 bits (84), Expect = 0.007
Identities = 32/246 (13%), Positives = 70/246 (28%), Gaps = 72/246 (29%)
Query: 12 TREEELLSF--PQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPL 69
TR +++ F T L LT + KS L L+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD----------CRPQDLPRE 321
Query: 70 SDQG-PFDIVL-------HKLTGKEWRQI----LEEYRQTHPEVTVLDPPYAIQHLHNRQ 117
P + + T W+ + L ++ + VL+P + +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLEPAE-YRKM---- 374
Query: 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLK----------AGLTLPLVAKP 167
+ +L + ++ IP ++L + + + K
Sbjct: 375 --------------F------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 168 LVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPD 227
+ + K +S+ Y K++ E+ H ++ + + + F D
Sbjct: 415 SLVEKQPKESTISI-PSIYLELKVKLE---NEYALHRSIV-------DHYNIPKTFDSDD 463
Query: 228 VTKQDL 233
+ L
Sbjct: 464 LIPPYL 469
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 7e-04
Identities = 47/279 (16%), Positives = 81/279 (29%), Gaps = 88/279 (31%)
Query: 67 RPLS-DQGPFDIVLHKLTGKEWR--QILEEYRQTHPEVT----VLDPPYAIQHLHNRQSM 119
RPL+ G + VL T + Q+ E++ + PE T D P L +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK--F 64
Query: 120 LQCVADMNLSNSYGKVDVPRQLVI---ERD----------ASSIPD----------VVLK 156
L V+ + + G+ D L + E A+ + ++K
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 157 AGLT-LPLVAKPL-----------VADGSAKSH--------------ELSLAYDQYSLKK 190
+T + +P V +G+A+ EL Y Y
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY---- 180
Query: 191 LEPPLV----------LQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVT-KQDLSTSAGV 239
LV L E + KV+ + + ++ P T +D S +
Sbjct: 181 --HVLVGDLIKFSAETLSELIRTTLDAEKVF--TQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 240 FRFP----------RVSCAAASADDADLDPCVAVCTKCS 268
P V+ +L + T S
Sbjct: 237 -SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Score = 37.3 bits (86), Expect = 0.006
Identities = 36/247 (14%), Positives = 68/247 (27%), Gaps = 91/247 (36%)
Query: 21 PQTQQQSKLVVVGY----ALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFD 76
T ++K ++ Y + + L VAI QG D
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-----FGGQGNTD 167
Query: 77 IVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVD 136
+E R + + Y V L ++ + L +++ D + G ++
Sbjct: 168 DYF-----EELRDLYQTYH---VLVGDL-IKFSAETL---SELIRTTLDAEKVFTQG-LN 214
Query: 137 VPRQLVIERDASSIPDV--VLKAGLTLPL------------------------------- 163
+ L + S+ PD +L ++ PL
Sbjct: 215 ILEWL---ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 164 -VAKPLVA--------------DGSAK-----------SHELSLAYDQYSLKKLEPPLVL 197
++ LV K +E AY SL PP +L
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE---AYPNTSL----PPSIL 324
Query: 198 QEFVNHG 204
++ + +
Sbjct: 325 EDSLENN 331
Score = 29.2 bits (65), Expect = 1.8
Identities = 27/215 (12%), Positives = 64/215 (29%), Gaps = 78/215 (36%)
Query: 126 MNLSNSYGKVDVPRQLVIERDAS-------SIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178
M+L Y + + D SI D+V+ + L + G K
Sbjct: 1633 MDL---YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL------TIHFGGEKGKR 1683
Query: 179 L-----SLAYDQYSLKKLEPPLVLQE---------FVNHGGVLFK-------VYIVGEAI 217
+ ++ ++ KL+ + +E F + G+L + ++ +A
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 218 -KVVR-RFSLPDVTKQD-------------LSTSAGVFRF------------------PR 244
+ ++ + +P D L++ A V PR
Sbjct: 1744 FEDLKSKGLIPA----DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 245 VSCAAASADDADLDP--CVAVCTK--CSFLCDGAS 275
++ ++P A ++ ++ +
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 34.3 bits (79), Expect = 0.030
Identities = 29/192 (15%), Positives = 62/192 (32%), Gaps = 35/192 (18%)
Query: 53 ARNKGILFVAIDQNR---PLSDQGP----FDIVLHKLTGKEWR----QILEEYRQTHPEV 101
A G+ + + L ++ + L + + + L +
Sbjct: 20 AEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTALG-----I 74
Query: 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL 161
V++ P I+ ++ + +A + P+ + D ++ G
Sbjct: 75 PVVNRPEVIEACGDKWATSVALAKAG-------LPQPKTALAT-DREEALRLMEAFGY-- 124
Query: 162 PLVAKPL-------VADGSAKSHELSLAYDQYSLKKLE-PPLVLQEFVNHGGVLFKVYIV 213
P+V KP+ +A + L + +QE+V G +V++V
Sbjct: 125 PVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVV 184
Query: 214 G-EAIKVVRRFS 224
G AI + R S
Sbjct: 185 GERAIAAIYRRS 196
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 30.6 bits (69), Expect = 0.54
Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 11/121 (9%)
Query: 101 VTVLDPPY-AIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL 159
VTV+ PY A + ++ +M + + R +S + + +
Sbjct: 99 VTVIVSPYAACELCFDKYTMYEYCLRQG-------IAHAR---TYATMASFEEALAAGEV 148
Query: 160 TLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKV 219
LP+ KP S + + + L L++QE + + Y+ + KV
Sbjct: 149 QLPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQELLVGQELGVDAYVDLISGKV 208
Query: 220 V 220
Sbjct: 209 T 209
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 30.6 bits (70), Expect = 0.60
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 85 KEWRQILEEYRQTHP-----EVTVLDPPYAIQHLH 114
WR L +Q P + P YAI+ L
Sbjct: 353 GVWRNELNVQKQKFPLSFKTFGEAIPPQYAIKVLD 387
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 30.3 bits (69), Expect = 0.77
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 21/117 (17%)
Query: 4 MKEEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAI 63
MK +++ +E+ L + S++ V + + K K+ + R+ G + +
Sbjct: 93 MKMGLKDTPTQEDWLV-SVLPEGSRVGVDPLIIPTDYWK-----KMAKVLRSAGHHLIPV 146
Query: 64 DQN--------RPLSDQGPFDIVLHKLTGKEW-------RQILEEYRQTHPEVTVLD 105
+N RP P + TG W R + E VT LD
Sbjct: 147 KENLVDKIWTDRPERPCKPLLTLGLDYTGISWKDKVADLRLKMAERNVMWFVVTALD 203
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.91
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 39/67 (58%)
Query: 184 DQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFP 243
++ +LKKL+ L K+Y A D SA P
Sbjct: 18 EKQALKKLQASL-------------KLY----A---------DD--------SA-----P 38
Query: 244 RVSCAAA 250
++ A
Sbjct: 39 ALAIKAT 45
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 28.7 bits (65), Expect = 2.4
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 85 KEWRQILEEYRQTHP-----EVTVLDPPYAIQHLH 114
KEW ++ ++T + + P + ++
Sbjct: 369 KEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMN 403
>3quf_A Extracellular solute-binding protein, family 1; structural
genomics, PSI-biology, midwest center for structu
genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum
subsp}
Length = 414
Score = 28.2 bits (63), Expect = 3.1
Identities = 4/35 (11%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 70 SDQGPFDIVL-HKLTGKEWRQILEEYRQTHPEVTV 103
+ G I + ++++ + + +P++T+
Sbjct: 25 AGGGKTKISFYSYFKDNQIGEVVKGFEKKNPDITL 59
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 28.4 bits (64), Expect = 3.1
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 85 KEWRQILEEYRQTHP-------EVTVLDPPYAIQHLH 114
EW + ++++ +P + + P I+ L
Sbjct: 435 SEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLS 471
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic
binding protein, galactose, GBP, sugar binding protein;
HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Length = 400
Score = 27.5 bits (61), Expect = 5.8
Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 38/142 (26%)
Query: 78 VLHKLTGKE---WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGK 134
+ G E ++ Y+Q +P V V++ N +++L+ M
Sbjct: 5 IFSWWAGDEGPALEALIRLYKQKYPGVEVINATVTGGAGVNARAVLK--TRML------- 55
Query: 135 VDVPRQLVIERDASSIPDVV-LKAGLTL--PLVAKPLVADGSAKSHELSLAYDQYSLKKL 191
PD + AG+ L V + D LS + Q +
Sbjct: 56 ------------GGDPPDTFQVHAGMELIGTWVVANRMED-------LSALFRQEGWLQA 96
Query: 192 EPPLVLQEFVNHGGVLFKVYIV 213
P ++ G ++ V
Sbjct: 97 FPKGLIDLISYKG----GIWSV 114
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system,
NF-KB signaling, alternative splicing, apoptosis,
cytoplasm, differentiation; NMR {Rattus norvegicus} PDB:
2ktr_B
Length = 102
Score = 25.8 bits (56), Expect = 7.3
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 206 VLFKVYIVG--EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRV 245
+ K Y++G EA + +RRFS + + +AG R+
Sbjct: 6 LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERL 47
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 27.1 bits (61), Expect = 8.2
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 85 KEWRQILEEYRQTHPE 100
+W ++ EY++ PE
Sbjct: 310 NKWNKLFSEYQKKFPE 325
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 26.7 bits (60), Expect = 9.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 85 KEWRQILEEYRQTHPE 100
EW +L EY Q +PE
Sbjct: 334 AEWNTMLGEYAQAYPE 349
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 26.7 bits (60), Expect = 9.9
Identities = 3/31 (9%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 85 KEWRQILEEYRQTHPEVT-VLDPPYAIQHLH 114
+ R + E+ + I ++
Sbjct: 362 EPLRARIAEFLADPETYEDGMRVHQVIDSMN 392
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.390
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,275,461
Number of extensions: 255036
Number of successful extensions: 646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 33
Length of query: 282
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 190
Effective length of database: 4,133,061
Effective search space: 785281590
Effective search space used: 785281590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)