BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023409
         (282 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B2AU25|LCL3_PODAN Probable endonuclease LCL3 OS=Podospora anserina (strain S / ATCC
           MYA-4624 / DSM 980 / FGSC 10383) GN=LCL3 PE=3 SV=1
          Length = 277

 Score = 33.5 bits (75), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 171 KGSQWFEMDRALALEASCYADEHYLPTFVSAKFWKRNSNRSLTWVDWSKGGPHPAKFQRR 230
           +G  +    +  A EA  + D H L   V A  W+R+    +    + +    P  FQR+
Sbjct: 134 EGGHFGRTAQPFAAEAQKFLDSHILNRRVRAYVWRRDQYDRIVATVYVR---RPPFFQRK 190

Query: 231 DVTIEFLKR-----LRSGSHCEYNGKRTNICFLFA 260
           DV++E LK+       + +  E+ G    I +  A
Sbjct: 191 DVSMELLKQGFATTYEAKTGAEFGGPSKEIEYKVA 225


>sp|P13511|CZCA_RALME Cobalt-zinc-cadmium resistance protein CzcA OS=Ralstonia
           metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
           GN=czcA PE=1 SV=3
          Length = 1063

 Score = 33.1 bits (74), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 66  SFNETVPQS----SVFHGRRIPSKEVQWGKFSMLEAERRLLANALLDITNQRFVLLSESC 121
           S N T+P+     +V+   R+  K +   K ++LE    ++    L + N R  L++ + 
Sbjct: 315 SINRTMPEGVKIVTVYDRTRLVDKAIATVKKNLLEGAVLVIVILFLFLGNIRAALITATI 374

Query: 122 IP---LFNFSTIYNYLINSSKAFIEAYDL 147
           IP   LF F+ + NY I+++   + A D 
Sbjct: 375 IPLAMLFTFTGMVNYKISANLMSLGALDF 403


>sp|P94177|CZCA_ALCSC Cation efflux system protein CzcA OS=Alcaligenes sp. (strain CT14)
           GN=czcA PE=3 SV=1
          Length = 1063

 Score = 33.1 bits (74), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 66  SFNETVPQS----SVFHGRRIPSKEVQWGKFSMLEAERRLLANALLDITNQRFVLLSESC 121
           S N T+P+     +V+   R+  K +   K ++LE    ++    L + N R  L++ + 
Sbjct: 315 SINRTMPEGVKIVTVYDRTRLVDKAIATVKKNLLEGAVLVIVILFLFLGNIRAALITATI 374

Query: 122 IP---LFNFSTIYNYLINSSKAFIEAYDL 147
           IP   LF F+ + NY I+++   + A D 
Sbjct: 375 IPLAMLFTFTGMVNYKISANLMSLGALDF 403


>sp|P48870|COX2_CYACA Cytochrome c oxidase subunit 2 OS=Cyanidium caldarium GN=COX2 PE=3
           SV=1
          Length = 255

 Score = 31.2 bits (69), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 16/99 (16%)

Query: 8   ELLWRASMAPRIHEYPFKRVPKVAFLF----LTRGAVTLAPLWEKFFHGHEGLYSIYVHS 63
           ELLW  ++ P +       VP  A L+    +   A+T+  +  +++  +E  YS YV+ 
Sbjct: 83  ELLW--TLTPSLVLIGIA-VPSFALLYSIDEIIDPAITIKAVGRQWYWSYE--YSDYVNE 137

Query: 64  SPSFNETVPQSSVFHGRRIPSKEVQWGKFSMLEAERRLL 102
              F         FH   +P ++++ G+F +LE + R++
Sbjct: 138 ENEF-------LAFHSYILPEEDLELGQFRLLEVDNRII 169


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.138    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,841,661
Number of Sequences: 539616
Number of extensions: 4448268
Number of successful extensions: 10038
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10037
Number of HSP's gapped (non-prelim): 4
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)