Query 023409
Match_columns 282
No_of_seqs 125 out of 736
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:49:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 2.6E-52 5.7E-57 395.2 19.4 230 25-279 75-364 (421)
2 PF02485 Branch: Core-2/I-Bran 100.0 2E-47 4.3E-52 340.9 8.8 205 30-240 1-243 (244)
3 KOG0799 Branching enzyme [Carb 100.0 1.2E-30 2.6E-35 250.4 14.1 230 29-276 104-386 (439)
4 cd06439 CESA_like_1 CESA_like_ 82.2 11 0.00024 32.6 9.1 101 22-135 23-132 (251)
5 TIGR03469 HonB hopene-associat 80.5 44 0.00095 31.7 13.1 114 25-143 37-167 (384)
6 cd02525 Succinoglycan_BP_ExoA 54.7 56 0.0012 27.7 7.2 93 29-135 1-104 (249)
7 PRK14583 hmsR N-glycosyltransf 54.1 36 0.00078 32.9 6.5 90 25-125 72-170 (444)
8 PF00535 Glycos_transf_2: Glyc 50.1 44 0.00095 25.9 5.4 96 33-139 3-108 (169)
9 cd02514 GT13_GLCNAC-TI GT13_GL 44.7 82 0.0018 29.7 7.0 98 30-127 2-114 (334)
10 cd02520 Glucosylceramide_synth 41.9 2E+02 0.0043 23.8 10.7 40 29-68 2-42 (196)
11 cd06433 GT_2_WfgS_like WfgS an 41.3 45 0.00098 27.0 4.4 82 33-126 3-91 (202)
12 PF13641 Glyco_tranf_2_3: Glyc 38.3 51 0.0011 27.9 4.3 108 28-143 1-120 (228)
13 cd04185 GT_2_like_b Subfamily 37.4 1E+02 0.0022 25.5 5.9 95 33-134 2-101 (202)
14 cd04192 GT_2_like_e Subfamily 36.7 1.2E+02 0.0027 25.2 6.5 95 33-135 2-105 (229)
15 PF07747 MTH865: MTH865-like f 33.8 21 0.00045 26.2 0.9 19 117-135 11-29 (75)
16 cd04196 GT_2_like_d Subfamily 32.3 1.8E+02 0.004 23.8 6.8 96 33-133 3-103 (214)
17 cd06421 CESA_CelA_like CESA_Ce 31.8 1.8E+02 0.0039 24.3 6.7 97 29-135 2-107 (234)
18 PRK11204 N-glycosyltransferase 30.4 1.4E+02 0.0031 28.2 6.4 101 23-134 49-159 (420)
19 COG4746 Uncharacterized protei 30.1 36 0.00078 24.9 1.7 39 84-136 38-76 (80)
20 cd06423 CESA_like CESA_like is 29.9 92 0.002 24.0 4.3 92 34-133 3-99 (180)
21 TIGR01310 L7 60S ribosomal pro 29.0 2.8E+02 0.0061 24.8 7.5 98 21-136 65-166 (235)
22 KOG3166 60S ribosomal protein 28.6 47 0.001 29.1 2.4 49 2-51 133-184 (209)
23 cd04186 GT_2_like_c Subfamily 28.2 2.8E+02 0.0061 21.4 6.9 83 33-126 2-90 (166)
24 cd04184 GT2_RfbC_Mx_like Myxoc 28.0 1.4E+02 0.0031 24.4 5.3 96 28-134 1-108 (202)
25 cd06434 GT2_HAS Hyaluronan syn 27.8 3.2E+02 0.007 22.9 7.7 83 30-126 2-93 (235)
26 TIGR03472 HpnI hopanoid biosyn 24.8 5.8E+02 0.012 23.8 11.5 41 27-68 40-81 (373)
27 cd06167 LabA_like LabA_like pr 24.6 1.8E+02 0.004 23.0 5.2 44 96-144 86-129 (149)
28 cd02511 Beta4Glucosyltransfera 24.4 2.9E+02 0.0062 23.6 6.7 94 29-135 1-97 (229)
29 cd06438 EpsO_like EpsO protein 23.5 2.2E+02 0.0047 23.2 5.6 85 33-124 2-95 (183)
30 cd06427 CESA_like_2 CESA_like_ 23.2 4.7E+02 0.01 22.3 8.7 100 28-135 1-110 (241)
31 PRK10073 putative glycosyl tra 22.9 6E+02 0.013 23.4 11.2 86 27-124 5-99 (328)
32 COG0036 Rpe Pentose-5-phosphat 22.6 85 0.0018 27.8 3.0 90 27-147 3-93 (220)
33 PF04122 CW_binding_2: Putativ 21.4 1.6E+02 0.0034 21.6 3.9 36 88-123 2-37 (92)
34 KOG2030 Predicted RNA-binding 20.8 85 0.0018 33.0 2.9 32 31-66 504-536 (911)
35 TIGR03111 glyc2_xrt_Gpos1 puta 20.3 5.3E+02 0.011 24.8 8.3 99 26-135 47-157 (439)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=2.6e-52 Score=395.21 Aligned_cols=230 Identities=21% Similarity=0.268 Sum_probs=183.9
Q ss_pred CCCCeEEEEEEe-cC-cccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC---------------CCCCcccceeeC-Ccc
Q 023409 25 KRVPKVAFLFLT-RG-AVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV---------------PQSSVFHGRRIP-SKE 86 (282)
Q Consensus 25 ~~~~kiAyLila-~~-~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~---------------~~~~vf~~~~i~-~~~ 86 (282)
+.++|+||||++ ++ .++++||++++++ +++.||||+|+|++... ...||++ +. +..
T Consensus 75 ~~~~r~AYLI~~h~~d~~~l~RLL~aLYh---prN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~v---l~k~~~ 148 (421)
T PLN03183 75 DKLPRFAYLVSGSKGDLEKLWRTLRALYH---PRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYM---ITKANL 148 (421)
T ss_pred CCCCeEEEEEEecCCcHHHHHHHHHHhcC---CCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEE---Eeccee
Confidence 458999999999 44 4899999999986 56779999999987531 1346665 34 457
Q ss_pred cccCcccHHHHHHHHHHHHHhC-CCCCEEEEecCCCccCCChHHH-HHHHh-cCCCCcEEeecCCCCCCcccccC-----
Q 023409 87 VQWGKFSMLEAERRLLANALLD-ITNQRFVLLSESCIPLFNFSTI-YNYLI-NSSKAFIEAYDLPGPVGRGRYNR----- 158 (282)
Q Consensus 87 v~WG~~SlV~A~l~ll~~al~~-~~~~~filLSg~d~PL~s~~~i-~~~l~-~~~~~fi~~~~~~~~~~~~Ry~~----- 158 (282)
|+|||+|+|+|||++|+.+++. .+|||||||||+||||+|+++| +.|+. +.|+|||++.+..++....|+.+
T Consensus 149 V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~p 228 (421)
T PLN03183 149 VTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDP 228 (421)
T ss_pred eccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecC
Confidence 9999999999999999999985 7899999999999999999995 55665 67899999875432222222111
Q ss_pred --------CC---C--CCCC-ccccccccceEEeehhhhhh-----------------ccccCCcchHHHHhhcc--ccc
Q 023409 159 --------PM---R--PVIR-LEQWRKGSQWFEMDRALALE-----------------ASCYADEHYLPTFVSAK--FWK 205 (282)
Q Consensus 159 --------~~---~--p~i~-~~~~~~GSqW~~Ltr~~~~~-----------------~~~~pDE~ffqTlL~~~--~~~ 205 (282)
.+ . ..+| ...+|+||+|++|||++|+| ++++|||.||||+|+|+ +..
T Consensus 229 gl~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~ 308 (421)
T PLN03183 229 GLYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAK 308 (421)
T ss_pred ceeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccc
Confidence 00 0 0122 35689999999999999999 57889999999999986 678
Q ss_pred ccCCCceEEEeCCCC-CCCCcccccCCCCHHHHHHHhcCCCcccCCccCCCCceEEecCCCCchhHHHHhchhhc
Q 023409 206 RNSNRSLTWVDWSKG-GPHPAKFQRRDVTIEFLKRLRSGSHCEYNGKRTNICFLFARKFLPNALDRLLRFAPKVM 279 (282)
Q Consensus 206 ~i~~~~lryidW~~~-~~~P~~l~~~d~~~e~L~~l~~~~~c~~~~~~~~~~~lFARKf~~~~~~~ll~~~~~~~ 279 (282)
+++|+++|||+|.++ ..||++|+.+|+ ++|.+| +++|||||+. ++++|++||+-+
T Consensus 309 t~vn~nLRyI~W~~~~~~~P~~l~~~D~-----~~l~~S------------~~lFARKFd~--d~~vl~~Id~~l 364 (421)
T PLN03183 309 TAVNHDLHYISWDNPPKQHPHTLSLNDT-----EKMIAS------------GAAFARKFRR--DDPVLDKIDKEL 364 (421)
T ss_pred cccCCceeEEecCCCCCCCCcccCHHHH-----HHHHhC------------CCccccCCCC--ChHHHHHHHHHH
Confidence 889999999999976 459999999998 677775 8899999996 578999998743
No 2
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=2e-47 Score=340.92 Aligned_cols=205 Identities=33% Similarity=0.540 Sum_probs=134.7
Q ss_pred EEEEEEe-c-CcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC---------CCCCcccceeeC-CcccccCcccHHHH
Q 023409 30 VAFLFLT-R-GAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV---------PQSSVFHGRRIP-SKEVQWGKFSMLEA 97 (282)
Q Consensus 30 iAyLila-~-~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~---------~~~~vf~~~~i~-~~~v~WG~~SlV~A 97 (282)
|||||++ + +++++++|++.++. +++.||||+|+|++... ...+|++ ++ |++|.|||+|+|+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~---~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~---v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYH---PDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHF---VPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH-----TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE----SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcC---CCCEEEEEEcCCCChHHHHHHHHhcccCCceee---cccccccccCCccHHHH
Confidence 7999999 7 77899999999975 45678999999976321 2345544 66 78999999999999
Q ss_pred HHHHHHHHHh-CCCCCEEEEecCCCccCCChHHHHHHHhcC--CCCcEEeecCCCCCCcccccCC----CCCCCCccccc
Q 023409 98 ERRLLANALL-DITNQRFVLLSESCIPLFNFSTIYNYLINS--SKAFIEAYDLPGPVGRGRYNRP----MRPVIRLEQWR 170 (282)
Q Consensus 98 ~l~ll~~al~-~~~~~~filLSg~d~PL~s~~~i~~~l~~~--~~~fi~~~~~~~~~~~~Ry~~~----~~p~i~~~~~~ 170 (282)
+|.||++|++ +++|+|||||||+||||+|+++|.++|+.. +.+|+++...+......||.+. +.+.++..++|
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 154 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLY 154 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--E
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccccccccc
Confidence 9999999999 689999999999999999999999999843 4788988876544333555432 22323334789
Q ss_pred cccceEEeehhhhhh----------------ccccCCcchHHHHhhcc--cccccCCCceEEEeCC-CCCCCCcccccCC
Q 023409 171 KGSQWFEMDRALALE----------------ASCYADEHYLPTFVSAK--FWKRNSNRSLTWVDWS-KGGPHPAKFQRRD 231 (282)
Q Consensus 171 ~GSqW~~Ltr~~~~~----------------~~~~pDE~ffqTlL~~~--~~~~i~~~~lryidW~-~~~~~P~~l~~~d 231 (282)
+|||||+|||++|+| ++++|||+||||||+++ ++.++.++++|||+|+ ++++||++++.++
T Consensus 155 ~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i~W~~~~~~~p~~~~~~~ 234 (244)
T PF02485_consen 155 KGSQWFSLTRDFVEYILDDPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTIVNRNLRYIDWSRRGGCHPKTLTICD 234 (244)
T ss_dssp EE-S--EEEHHHHHHHHH-HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE-BTGT-SS---SSEEEE
T ss_pred ccceeeEeeHHHHHHhhhhHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccccCCCEEEEECCCCCCCCCCeeeeee
Confidence 999999999999999 56899999999999877 5788899999999999 7889999999999
Q ss_pred CCHHHHHHH
Q 023409 232 VTIEFLKRL 240 (282)
Q Consensus 232 ~~~e~L~~l 240 (282)
++.+.|..|
T Consensus 235 ~~~~d~~~~ 243 (244)
T PF02485_consen 235 LGPEDLPWL 243 (244)
T ss_dssp --GGGHHHH
T ss_pred eCHHHHHhh
Confidence 877666554
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.2e-30 Score=250.42 Aligned_cols=230 Identities=20% Similarity=0.245 Sum_probs=167.6
Q ss_pred eEEEEEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC---------CCCCcccceeeC-CcccccCcccHHHH
Q 023409 29 KVAFLFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV---------PQSSVFHGRRIP-SKEVQWGKFSMLEA 97 (282)
Q Consensus 29 kiAyLila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~---------~~~~vf~~~~i~-~~~v~WG~~SlV~A 97 (282)
-+||+.++ ++.++++++++++|+ +.+.++||+|++++..+ ..+||++ ++ +..|.|||.|++.|
T Consensus 104 ~~a~~~~v~kd~~~verll~aiYh---PqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v---~~k~~~v~~~G~s~l~a 177 (439)
T KOG0799|consen 104 PAAFLRVVYKDYEQVERLLQAIYH---PQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIV---LPKRESVTYGGHSILAA 177 (439)
T ss_pred ceEEEEeecccHHHHHHHHHHHhC---CcCcceEEECCCCCHHHHHHHHHHHhcCCceEE---eccccceecCCchhhHH
Confidence 45666666 889999999999997 44557899999988642 2456655 33 57999999999999
Q ss_pred HHHHHHHHHhC-CCCCEEEEecCCCccCCChHHHHHHHhc-CCCCcEEeecCCCCCCcccccC-----CC--------CC
Q 023409 98 ERRLLANALLD-ITNQRFVLLSESCIPLFNFSTIYNYLIN-SSKAFIEAYDLPGPVGRGRYNR-----PM--------RP 162 (282)
Q Consensus 98 ~l~ll~~al~~-~~~~~filLSg~d~PL~s~~~i~~~l~~-~~~~fi~~~~~~~~~~~~Ry~~-----~~--------~p 162 (282)
.++||+.+++. .+|+|||+|||+||||+|+.||.+.|+. +|.|+|+.....+.....+-++ ++ .+
T Consensus 178 ~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~~ 257 (439)
T KOG0799|consen 178 HLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPWV 257 (439)
T ss_pred HHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCccc
Confidence 99999999986 5699999999999999999999999985 8899999876543211111110 01 01
Q ss_pred CCC-ccccccccceEEeehhhhhh---------------ccccCCcchHHHHhhcccccccCCCc--eEEEeCCC-----
Q 023409 163 VIR-LEQWRKGSQWFEMDRALALE---------------ASCYADEHYLPTFVSAKFWKRNSNRS--LTWVDWSK----- 219 (282)
Q Consensus 163 ~i~-~~~~~~GSqW~~Ltr~~~~~---------------~~~~pDE~ffqTlL~~~~~~~i~~~~--lryidW~~----- 219 (282)
.+| ...+++||.|++|+|++|+| +++.|||.||+|+++|.++.....++ +||+.|..
T Consensus 258 ~lp~~~ki~~Gs~~~~LsR~fv~y~i~~~~~~~ll~~~~~t~~~dE~f~~Tl~~n~~~~~g~~~~~~lr~~~W~~~~~~~ 337 (439)
T KOG0799|consen 258 ILPTALKLFKGSAWVSLSRAFVEYLISGNLPRTLLMYYNNTYSPDEGFFHTLQCNPFGMPGVFNDECLRYTNWDRKDVDP 337 (439)
T ss_pred cCCCceEEEecceeEEEeHHHHHHHhcCccHHHHHHHHhCccCcchhhhHhhhccccCCCCcccchhhcceecccccccc
Confidence 123 35689999999999999999 78999999999999988554455666 99999986
Q ss_pred CCCCCcccccCCCCHHHHHHHhcCCCcccCCcc----CCCCceEEecCCCCchhHHHHhch
Q 023409 220 GGPHPAKFQRRDVTIEFLKRLRSGSHCEYNGKR----TNICFLFARKFLPNALDRLLRFAP 276 (282)
Q Consensus 220 ~~~~P~~l~~~d~~~e~L~~l~~~~~c~~~~~~----~~~~~lFARKf~~~~~~~ll~~~~ 276 (282)
.++||..++..|. .|.++.+. ++...++|-||....|..++....
T Consensus 338 ~~~~c~~~~~~~~------------~cv~g~~~~~~~~k~~~l~~nkvl~~~d~~~i~c~~ 386 (439)
T KOG0799|consen 338 PKQHCHSLTVRDF------------ICVFGSGDLPFARKFPHLVANKVLDKFDPELIGCLA 386 (439)
T ss_pred cccCCcccccccc------------eeeeecchhHHHhhCchhhcccchhccCHHHHhhhh
Confidence 2456777766664 34433321 112445555555555555555443
No 4
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=82.16 E-value=11 Score=32.60 Aligned_cols=101 Identities=16% Similarity=0.052 Sum_probs=61.4
Q ss_pred CCCCCCCeEEEEEEe-cCcccHHHHHHHhhhcCCCC--eEEEEEeCCCCCCCC------CCCCcccceeeCCcccccCcc
Q 023409 22 YPFKRVPKVAFLFLT-RGAVTLAPLWEKFFHGHEGL--YSIYVHSSPSFNETV------PQSSVFHGRRIPSKEVQWGKF 92 (282)
Q Consensus 22 ~~~~~~~kiAyLila-~~~~~l~~L~~~l~~~~~~~--~~iyIHvD~k~~~~~------~~~~vf~~~~i~~~~v~WG~~ 92 (282)
.+....++++.+|.+ +....+.++++.+.++..+. +.++|..|.+.+... ...++.. +. .. ...
T Consensus 23 ~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~---i~--~~--~~~ 95 (251)
T cd06439 23 PDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKL---LR--FP--ERR 95 (251)
T ss_pred CCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEE---EE--cC--CCC
Confidence 344557789999999 55567899999988754323 678888887655321 1111211 11 11 123
Q ss_pred cHHHHHHHHHHHHHhCCCCCEEEEecCCCccCCChHHHHHHHh
Q 023409 93 SMLEAERRLLANALLDITNQRFVLLSESCIPLFNFSTIYNYLI 135 (282)
Q Consensus 93 SlV~A~l~ll~~al~~~~~~~filLSg~d~PL~s~~~i~~~l~ 135 (282)
+...|--.+++.| ..||++++-+.+.|- .+.+.+.+.
T Consensus 96 g~~~a~n~gi~~a----~~d~i~~lD~D~~~~--~~~l~~l~~ 132 (251)
T cd06439 96 GKAAALNRALALA----TGEIVVFTDANALLD--PDALRLLVR 132 (251)
T ss_pred ChHHHHHHHHHHc----CCCEEEEEccccCcC--HHHHHHHHH
Confidence 3455655555554 348999999999995 455555543
No 5
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=80.49 E-value=44 Score=31.66 Aligned_cols=114 Identities=10% Similarity=0.012 Sum_probs=63.3
Q ss_pred CCCCeEEEEEEe-cCcccHHHHHHHhhhcCCC-CeEEEEEeCCCCCCCC--------CCC---CcccceeeC--Cccccc
Q 023409 25 KRVPKVAFLFLT-RGAVTLAPLWEKFFHGHEG-LYSIYVHSSPSFNETV--------PQS---SVFHGRRIP--SKEVQW 89 (282)
Q Consensus 25 ~~~~kiAyLila-~~~~~l~~L~~~l~~~~~~-~~~iyIHvD~k~~~~~--------~~~---~vf~~~~i~--~~~v~W 89 (282)
...+++..+|-+ +....+.++++.+.++..+ .+.|+|=-|.+.+... ... ++-. +. ..+..|
T Consensus 37 ~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~v---i~~~~~~~g~ 113 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTV---VSGQPLPPGW 113 (384)
T ss_pred CCCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEE---ecCCCCCCCC
Confidence 456789998889 5556799999999875433 4555555554444311 011 2211 22 123455
Q ss_pred CcccHHHHHHHHHHHHHhC-CCCCEEEEecCCCccCCCh-HHHHHHHhcCCCCcEE
Q 023409 90 GKFSMLEAERRLLANALLD-ITNQRFVLLSESCIPLFNF-STIYNYLINSSKAFIE 143 (282)
Q Consensus 90 G~~SlV~A~l~ll~~al~~-~~~~~filLSg~d~PL~s~-~~i~~~l~~~~~~fi~ 143 (282)
+| ...|.-.+++.|-+. ++.++++++-..+.+-... .++.+.+...+...+.
T Consensus 114 ~G--k~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs 167 (384)
T TIGR03469 114 SG--KLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVS 167 (384)
T ss_pred cc--hHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEE
Confidence 54 335666677777543 3368888777777653222 3444444444445553
No 6
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=54.65 E-value=56 Score=27.75 Aligned_cols=93 Identities=12% Similarity=0.067 Sum_probs=52.3
Q ss_pred eEEEEEEe-cCcccHHHHHHHhhhcCC--CCeEEEEEeCCCCCCCC------C--CCCcccceeeCCcccccCcccHHHH
Q 023409 29 KVAFLFLT-RGAVTLAPLWEKFFHGHE--GLYSIYVHSSPSFNETV------P--QSSVFHGRRIPSKEVQWGKFSMLEA 97 (282)
Q Consensus 29 kiAyLila-~~~~~l~~L~~~l~~~~~--~~~~iyIHvD~k~~~~~------~--~~~vf~~~~i~~~~v~WG~~SlV~A 97 (282)
+++.+|.+ +.+..+.++++.+.++.. ..+.|+|--|.+.+... . ...+.. +... . + +...|
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~---i~~~--~-~--~~~~a 72 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRL---IDNP--K-R--IQSAG 72 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEE---EeCC--C-C--CchHH
Confidence 35677777 667789999999987543 34566666555544311 1 111211 2111 1 1 12234
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCCccCCChHHHHHHHh
Q 023409 98 ERRLLANALLDITNQRFVLLSESCIPLFNFSTIYNYLI 135 (282)
Q Consensus 98 ~l~ll~~al~~~~~~~filLSg~d~PL~s~~~i~~~l~ 135 (282)
.-.+++.| ..||+++|-+.+.+ +...+.+.+.
T Consensus 73 ~N~g~~~a----~~d~v~~lD~D~~~--~~~~l~~~~~ 104 (249)
T cd02525 73 LNIGIRNS----RGDIIIRVDAHAVY--PKDYILELVE 104 (249)
T ss_pred HHHHHHHh----CCCEEEEECCCccC--CHHHHHHHHH
Confidence 33344433 67999999999986 4555655553
No 7
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=54.12 E-value=36 Score=32.93 Aligned_cols=90 Identities=10% Similarity=-0.025 Sum_probs=53.5
Q ss_pred CCCCeEEEEEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC--------CCCCcccceeeCCcccccCcccHH
Q 023409 25 KRVPKVAFLFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV--------PQSSVFHGRRIPSKEVQWGKFSML 95 (282)
Q Consensus 25 ~~~~kiAyLila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~--------~~~~vf~~~~i~~~~v~WG~~SlV 95 (282)
+..++++.+|-+ +.+..+.+.++.+.+...+++.|+|--|.+.+... ...++-. +. ....+| ..
T Consensus 72 ~~~p~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~v---v~--~~~n~G--ka 144 (444)
T PRK14583 72 KGHPLVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRV---IH--LAHNQG--KA 144 (444)
T ss_pred CCCCcEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEE---EE--eCCCCC--HH
Confidence 345789999999 55567889999998765556777776665544321 1111211 11 011233 22
Q ss_pred HHHHHHHHHHHhCCCCCEEEEecCCCccCC
Q 023409 96 EAERRLLANALLDITNQRFVLLSESCIPLF 125 (282)
Q Consensus 96 ~A~l~ll~~al~~~~~~~filLSg~d~PL~ 125 (282)
. .+..+++..+.||++.+-+.+.|-.
T Consensus 145 ~----AlN~gl~~a~~d~iv~lDAD~~~~~ 170 (444)
T PRK14583 145 I----ALRMGAAAARSEYLVCIDGDALLDK 170 (444)
T ss_pred H----HHHHHHHhCCCCEEEEECCCCCcCH
Confidence 2 3444454456899999999998743
No 8
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=50.12 E-value=44 Score=25.93 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=56.2
Q ss_pred EEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC-------C-CCCcccceeeCCcccccCcccHHHHHHHHHH
Q 023409 33 LFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV-------P-QSSVFHGRRIPSKEVQWGKFSMLEAERRLLA 103 (282)
Q Consensus 33 Lila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~-------~-~~~vf~~~~i~~~~v~WG~~SlV~A~l~ll~ 103 (282)
+|.+ +.+..+.++++.+.++......|+|--|.+.+... . ..++.. + .... ..+.-.|.-.+++
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~---i---~~~~-n~g~~~~~n~~~~ 75 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRY---I---RNPE-NLGFSAARNRGIK 75 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEE---E---EHCC-CSHHHHHHHHHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccccccccccccccc---c---cccc-ccccccccccccc
Confidence 4555 66688999999999875556777776665533210 0 112211 1 1111 2255567666777
Q ss_pred HHHhCCCCCEEEEecCCCccCCC-hHHHHHHHhcCCC
Q 023409 104 NALLDITNQRFVLLSESCIPLFN-FSTIYNYLINSSK 139 (282)
Q Consensus 104 ~al~~~~~~~filLSg~d~PL~s-~~~i~~~l~~~~~ 139 (282)
.|.. +|++++-+.|++..+ .+++.+.++..+.
T Consensus 76 ~a~~----~~i~~ld~D~~~~~~~l~~l~~~~~~~~~ 108 (169)
T PF00535_consen 76 HAKG----EYILFLDDDDIISPDWLEELVEALEKNPP 108 (169)
T ss_dssp H--S----SEEEEEETTEEE-TTHHHHHHHHHHHCTT
T ss_pred ccce----eEEEEeCCCceEcHHHHHHHHHHHHhCCC
Confidence 7643 489999999988887 6677777765444
No 9
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=44.67 E-value=82 Score=29.68 Aligned_cols=98 Identities=11% Similarity=0.134 Sum_probs=57.6
Q ss_pred EEEEEEe-cCcccHHHHHHHhhhc--CCCCeEEEEEeCCCCCCCC----CCC-CcccceeeCCcccccC-------cccH
Q 023409 30 VAFLFLT-RGAVTLAPLWEKFFHG--HEGLYSIYVHSSPSFNETV----PQS-SVFHGRRIPSKEVQWG-------KFSM 94 (282)
Q Consensus 30 iAyLila-~~~~~l~~L~~~l~~~--~~~~~~iyIHvD~k~~~~~----~~~-~vf~~~~i~~~~v~WG-------~~Sl 94 (282)
++.+|++ +.|+.+++.+++|.+. ..+...++|=.|....... ... .+-.-.+........| .+++
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~i 81 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYYRI 81 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhccccEEEEcccccccccCcccccchhhHH
Confidence 3567888 8899999999999985 3446778998887643211 110 1111001110112222 2333
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEecCCCccCCCh
Q 023409 95 LEAERRLLANALLDITNQRFVLLSESCIPLFNF 127 (282)
Q Consensus 95 V~A~l~ll~~al~~~~~~~filLSg~d~PL~s~ 127 (282)
.+.-..++..++.....+++|.|=+.|.|-..+
T Consensus 82 a~hyk~aln~vF~~~~~~~vIILEDDl~~sPdF 114 (334)
T cd02514 82 ARHYKWALTQTFNLFGYSFVIILEDDLDIAPDF 114 (334)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCccCHhH
Confidence 343334566666545689999999998887664
No 10
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=41.89 E-value=2e+02 Score=23.76 Aligned_cols=40 Identities=20% Similarity=0.105 Sum_probs=28.7
Q ss_pred eEEEEEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 023409 29 KVAFLFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFN 68 (282)
Q Consensus 29 kiAyLila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~ 68 (282)
++..+|-+ +....+.++++.+.++..+.+.|+|=.|.+.+
T Consensus 2 ~vsviip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d 42 (196)
T cd02520 2 GVSILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDD 42 (196)
T ss_pred CeEEEEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcc
Confidence 57777888 56668999999998755455677666666544
No 11
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=41.30 E-value=45 Score=27.02 Aligned_cols=82 Identities=18% Similarity=0.056 Sum_probs=45.3
Q ss_pred EEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC------CCCCcccceeeCCcccccCcccHHHHHHHHHHHH
Q 023409 33 LFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV------PQSSVFHGRRIPSKEVQWGKFSMLEAERRLLANA 105 (282)
Q Consensus 33 Lila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~------~~~~vf~~~~i~~~~v~WG~~SlV~A~l~ll~~a 105 (282)
+|.+ +.+..+.++++.+.++..+++.|+|--|.+.+... ....+.. + ....+| ...|.-.+++.|
T Consensus 3 vi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~~~~~---~---~~~~~g--~~~a~n~~~~~a 74 (202)
T cd06433 3 ITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDKITYW---I---SEPDKG--IYDAMNKGIALA 74 (202)
T ss_pred EEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhhcEEE---E---ecCCcC--HHHHHHHHHHHc
Confidence 4556 55667899999998765445666555444333211 1111111 1 122333 345544444433
Q ss_pred HhCCCCCEEEEecCCCccCCC
Q 023409 106 LLDITNQRFVLLSESCIPLFN 126 (282)
Q Consensus 106 l~~~~~~~filLSg~d~PL~s 126 (282)
..+|+++|.+.|.+...
T Consensus 75 ----~~~~v~~ld~D~~~~~~ 91 (202)
T cd06433 75 ----TGDIIGFLNSDDTLLPG 91 (202)
T ss_pred ----CCCEEEEeCCCcccCch
Confidence 46899999999988754
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=38.34 E-value=51 Score=27.87 Aligned_cols=108 Identities=15% Similarity=0.090 Sum_probs=47.4
Q ss_pred CeEEEEEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCCC--------CCCcccceeeCCcccccCcccHHHHH
Q 023409 28 PKVAFLFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETVP--------QSSVFHGRRIPSKEVQWGKFSMLEAE 98 (282)
Q Consensus 28 ~kiAyLila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~~--------~~~vf~~~~i~~~~v~WG~~SlV~A~ 98 (282)
|+|+.+|.+ +.+..+.+.++.+.+...+...|+|=.|...+.... ...+.+ +-++.. -.=|.-+...|.
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v-~vi~~~-~~~g~~~k~~a~ 78 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRV-RVIRRP-RNPGPGGKARAL 78 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GE-EEEE-----HHHHHHHHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCce-EEeecC-CCCCcchHHHHH
Confidence 468888888 666789999999987533456666644443322111 011100 001110 000112333444
Q ss_pred HHHHHHHHhCCCCCEEEEecCCCccCCChHHHHH---HHhcCCCCcEE
Q 023409 99 RRLLANALLDITNQRFVLLSESCIPLFNFSTIYN---YLINSSKAFIE 143 (282)
Q Consensus 99 l~ll~~al~~~~~~~filLSg~d~PL~s~~~i~~---~l~~~~~~fi~ 143 (282)
-.+++. .+.+++++|-..+.| +...+.+ .|..++-..+.
T Consensus 79 n~~~~~----~~~d~i~~lD~D~~~--~p~~l~~~~~~~~~~~~~~v~ 120 (228)
T PF13641_consen 79 NEALAA----ARGDYILFLDDDTVL--DPDWLERLLAAFADPGVGAVG 120 (228)
T ss_dssp HHHHHH-------SEEEEE-SSEEE---CHHHHHHHHHHHBSS--EEE
T ss_pred HHHHHh----cCCCEEEEECCCcEE--CHHHHHHHHHHHHhCCCCeEe
Confidence 344443 347888888888887 4444444 44345555554
No 13
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=37.38 E-value=1e+02 Score=25.49 Aligned_cols=95 Identities=13% Similarity=0.057 Sum_probs=49.5
Q ss_pred EEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC----CCCCcccceeeCCcccccCcccHHHHHHHHHHHHHh
Q 023409 33 LFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV----PQSSVFHGRRIPSKEVQWGKFSMLEAERRLLANALL 107 (282)
Q Consensus 33 Lila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~----~~~~vf~~~~i~~~~v~WG~~SlV~A~l~ll~~al~ 107 (282)
+|.+ +.+..++++++.+.++..+...|+|--|.+.+... .....+..+.+ +.....|.. .|-=.+++.|.
T Consensus 2 iI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~i~~~-~~~~n~g~~---~~~n~~~~~a~- 76 (202)
T cd04185 2 VVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDNIVYL-RLPENLGGA---GGFYEGVRRAY- 76 (202)
T ss_pred EEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCceEEE-ECccccchh---hHHHHHHHHHh-
Confidence 4566 55667999999998755445566665554433211 00110000001 112233432 23333455555
Q ss_pred CCCCCEEEEecCCCccCCChHHHHHHH
Q 023409 108 DITNQRFVLLSESCIPLFNFSTIYNYL 134 (282)
Q Consensus 108 ~~~~~~filLSg~d~PL~s~~~i~~~l 134 (282)
..+.+|++++-..|.+- ...+.+..
T Consensus 77 ~~~~d~v~~ld~D~~~~--~~~l~~l~ 101 (202)
T cd04185 77 ELGYDWIWLMDDDAIPD--PDALEKLL 101 (202)
T ss_pred ccCCCEEEEeCCCCCcC--hHHHHHHH
Confidence 34679999998888875 33444443
No 14
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.74 E-value=1.2e+02 Score=25.19 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=49.0
Q ss_pred EEEe-cCcccHHHHHHHhhhcCCCC--eEEEEEeCCCCCCCCCCCC------cccceeeCCcccccCcccHHHHHHHHHH
Q 023409 33 LFLT-RGAVTLAPLWEKFFHGHEGL--YSIYVHSSPSFNETVPQSS------VFHGRRIPSKEVQWGKFSMLEAERRLLA 103 (282)
Q Consensus 33 Lila-~~~~~l~~L~~~l~~~~~~~--~~iyIHvD~k~~~~~~~~~------vf~~~~i~~~~v~WG~~SlV~A~l~ll~ 103 (282)
+|.+ +.+..+.+.++.+..+..+. +.|+|--|.+.+....... -...+.++.... ++.+...|. .
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~--~~~g~~~a~----n 75 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRV--SISGKKNAL----T 75 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCc--ccchhHHHH----H
Confidence 4555 55567999999998755444 6777776665442111000 000001211111 122233332 3
Q ss_pred HHHhCCCCCEEEEecCCCccCCChHHHHHHHh
Q 023409 104 NALLDITNQRFVLLSESCIPLFNFSTIYNYLI 135 (282)
Q Consensus 104 ~al~~~~~~~filLSg~d~PL~s~~~i~~~l~ 135 (282)
.+++....+|++++-+.|.+- .+.+.+.+.
T Consensus 76 ~g~~~~~~d~i~~~D~D~~~~--~~~l~~l~~ 105 (229)
T cd04192 76 TAIKAAKGDWIVTTDADCVVP--SNWLLTFVA 105 (229)
T ss_pred HHHHHhcCCEEEEECCCcccC--HHHHHHHHH
Confidence 333333568999999999774 556655554
No 15
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=33.77 E-value=21 Score=26.19 Aligned_cols=19 Identities=11% Similarity=0.072 Sum_probs=15.8
Q ss_pred ecCCCccCCChHHHHHHHh
Q 023409 117 LSESCIPLFNFSTIYNYLI 135 (282)
Q Consensus 117 LSg~d~PL~s~~~i~~~l~ 135 (282)
+.|.+|||+|..|+...|=
T Consensus 11 ~~~a~FPI~s~~eL~~alP 29 (75)
T PF07747_consen 11 FKGADFPIKSPMELLPALP 29 (75)
T ss_dssp HTTSSSTTBHHHHHHHH-T
T ss_pred HhcCCCCCCCHHHHHHhCC
Confidence 4588999999999999984
No 16
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=32.25 E-value=1.8e+02 Score=23.77 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=48.8
Q ss_pred EEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCCCCCCcccce---eeCCcccccCcccHHHHHHHHHHHHHhC
Q 023409 33 LFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETVPQSSVFHGR---RIPSKEVQWGKFSMLEAERRLLANALLD 108 (282)
Q Consensus 33 Lila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~~~~~vf~~~---~i~~~~v~WG~~SlV~A~l~ll~~al~~ 108 (282)
+|-+ +.+..+.+.++.+..+..+.+.|+|=-|.+.+.......-+..+ .+ ..-..-++.+...+.-.+++ .
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~n~g~~----~ 77 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFII-ILIRNGKNLGVARNFESLLQ----A 77 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceE-EEEeCCCCccHHHHHHHHHH----h
Confidence 4556 55567999999998765445666655555443211000000000 00 01122344455555444433 3
Q ss_pred CCCCEEEEecCCCccCCC-hHHHHHH
Q 023409 109 ITNQRFVLLSESCIPLFN-FSTIYNY 133 (282)
Q Consensus 109 ~~~~~filLSg~d~PL~s-~~~i~~~ 133 (282)
...+|+++|-..|.+..+ ...+.+.
T Consensus 78 ~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 78 ADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred CCCCEEEEECCCcccChhHHHHHHHH
Confidence 457899988888877543 3444444
No 17
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=31.80 E-value=1.8e+02 Score=24.34 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=50.6
Q ss_pred eEEEEEEecC-c-ccHHHHHHHhhhcCCCC--eEEEEEeCCCCCCCC-----CCCCcccceeeCCcccccCcccHHHHHH
Q 023409 29 KVAFLFLTRG-A-VTLAPLWEKFFHGHEGL--YSIYVHSSPSFNETV-----PQSSVFHGRRIPSKEVQWGKFSMLEAER 99 (282)
Q Consensus 29 kiAyLila~~-~-~~l~~L~~~l~~~~~~~--~~iyIHvD~k~~~~~-----~~~~vf~~~~i~~~~v~WG~~SlV~A~l 99 (282)
++..+|-+.| + ..+++.++.+..+..+. +.++| +|..++... ....-...+.+ .....+|+-. .+
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiiv-vdd~s~d~t~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~-- 75 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYV-LDDGRRPELRALAAELGVEYGYRYL-TRPDNRHAKA--GN-- 75 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEE-EcCCCchhHHHHHHHhhcccCceEE-EeCCCCCCcH--HH--
Confidence 5677777744 3 45888999998755444 67777 444433221 00100000001 1233445321 11
Q ss_pred HHHHHHHhCCCCCEEEEecCCCccCCChHHHHHHHh
Q 023409 100 RLLANALLDITNQRFVLLSESCIPLFNFSTIYNYLI 135 (282)
Q Consensus 100 ~ll~~al~~~~~~~filLSg~d~PL~s~~~i~~~l~ 135 (282)
+..+++....+|++++...|++- .+.+.+.+.
T Consensus 76 --~n~~~~~a~~d~i~~lD~D~~~~--~~~l~~l~~ 107 (234)
T cd06421 76 --LNNALAHTTGDFVAILDADHVPT--PDFLRRTLG 107 (234)
T ss_pred --HHHHHHhCCCCEEEEEccccCcC--ccHHHHHHH
Confidence 23333333678999999988883 355555543
No 18
>PRK11204 N-glycosyltransferase; Provisional
Probab=30.42 E-value=1.4e+02 Score=28.16 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=56.9
Q ss_pred CCCCCCeEEEEEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC--------CCCCcccceeeCCcccccCccc
Q 023409 23 PFKRVPKVAFLFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV--------PQSSVFHGRRIPSKEVQWGKFS 93 (282)
Q Consensus 23 ~~~~~~kiAyLila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~--------~~~~vf~~~~i~~~~v~WG~~S 93 (282)
+....++++.+|-+ +....+.+.++.+.+...+.+.|+|=-|.+.+... ...++.. +.. -..+|
T Consensus 49 ~~~~~p~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~---i~~--~~n~G-- 121 (420)
T PRK11204 49 QLKEYPGVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRV---IHL--AENQG-- 121 (420)
T ss_pred CcCCCCCEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEE---EEc--CCCCC--
Confidence 44556789999999 55567999999998765556777775555544311 1111211 110 11222
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCCccCCC-hHHHHHHH
Q 023409 94 MLEAERRLLANALLDITNQRFVLLSESCIPLFN-FSTIYNYL 134 (282)
Q Consensus 94 lV~A~l~ll~~al~~~~~~~filLSg~d~PL~s-~~~i~~~l 134 (282)
...| +..+++..+.||++.+-..+.|-.. ..++.+.+
T Consensus 122 ka~a----ln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~ 159 (420)
T PRK11204 122 KANA----LNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHF 159 (420)
T ss_pred HHHH----HHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 2233 3344444467899988888777432 23444444
No 19
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.12 E-value=36 Score=24.93 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=28.8
Q ss_pred CcccccCcccHHHHHHHHHHHHHhCCCCCEEEEecCCCccCCChHHHHHHHhc
Q 023409 84 SKEVQWGKFSMLEAERRLLANALLDITNQRFVLLSESCIPLFNFSTIYNYLIN 136 (282)
Q Consensus 84 ~~~v~WG~~SlV~A~l~ll~~al~~~~~~~filLSg~d~PL~s~~~i~~~l~~ 136 (282)
+-.+.-||.+.-.|++. -+||..|||.++.+++...+.+
T Consensus 38 dttc~~G~~e~tA~E~~--------------kLlT~~DFPfk~a~~vad~iv~ 76 (80)
T COG4746 38 DTTCESGGVEVTAAEAG--------------KLLTDADFPFKSAEQVADTIVN 76 (80)
T ss_pred CCCccCCCeeeeHHHHH--------------hhccccCCCCCCHHHHHHHHHH
Confidence 35677788776555432 2588999999999999887754
No 20
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=29.86 E-value=92 Score=23.97 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=48.6
Q ss_pred EEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC----CCCCcccceeeCCcccccCcccHHHHHHHHHHHHHhC
Q 023409 34 FLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV----PQSSVFHGRRIPSKEVQWGKFSMLEAERRLLANALLD 108 (282)
Q Consensus 34 ila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~----~~~~vf~~~~i~~~~v~WG~~SlV~A~l~ll~~al~~ 108 (282)
|.+ +.+..+.++++.+.++....+.++|--|.+.+... .....+....+..... +..+...|--.+++.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~n~~~~~~--- 77 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDK--ENGGKAGALNAGLRHA--- 77 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEec--ccCCchHHHHHHHHhc---
Confidence 445 55678999999998754456777776666544321 0011000000000111 1223334444455544
Q ss_pred CCCCEEEEecCCCccCCChHHHHHH
Q 023409 109 ITNQRFVLLSESCIPLFNFSTIYNY 133 (282)
Q Consensus 109 ~~~~~filLSg~d~PL~s~~~i~~~ 133 (282)
..+|++++-+.+.+- ...|.+.
T Consensus 78 -~~~~i~~~D~D~~~~--~~~l~~~ 99 (180)
T cd06423 78 -KGDIVVVLDADTILE--PDALKRL 99 (180)
T ss_pred -CCCEEEEECCCCCcC--hHHHHHH
Confidence 578899888888773 4555555
No 21
>TIGR01310 L7 60S ribosomal protein L7, eukaryotic. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).
Probab=29.05 E-value=2.8e+02 Score=24.82 Aligned_cols=98 Identities=11% Similarity=0.138 Sum_probs=53.3
Q ss_pred CCCCCCCCeEEEEEEecCccc----HHHHHHHhhhcCCCCeEEEEEeCCCCCCCCCCCCcccceeeCCcccccCcccHHH
Q 023409 21 EYPFKRVPKVAFLFLTRGAVT----LAPLWEKFFHGHEGLYSIYVHSSPSFNETVPQSSVFHGRRIPSKEVQWGKFSMLE 96 (282)
Q Consensus 21 ~~~~~~~~kiAyLila~~~~~----l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~~~~~vf~~~~i~~~~v~WG~~SlV~ 96 (282)
..+.+.-+|++|+|-.++... +...++.|. -..-.+-++|-..+.....+. .| .--|.||..|+
T Consensus 65 ~~~~~~e~kl~fVIRirG~~~v~p~v~k~L~lLR-L~~in~~Vfvk~~~~~~~ML~--------~V-epYVt~G~p~l-- 132 (235)
T TIGR01310 65 KFYVPAEHKLLFVIRIKGINGIPPKPRKVLRLLR-LKQVHNGVFVKVNKATLQMLR--------IV-EPYVAYGYPNL-- 132 (235)
T ss_pred CcCCCCCCeEEEEEEeCCCCCCCHHHHHHHHHhC-CCccceEEEEECCHHHHHHHH--------hc-CCeEEEecCCH--
Confidence 455666789999999855432 344444332 111122344443322111000 02 22589998884
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCCccCCChHHHHHHHhc
Q 023409 97 AERRLLANALLDITNQRFVLLSESCIPLFNFSTIYNYLIN 136 (282)
Q Consensus 97 A~l~ll~~al~~~~~~~filLSg~d~PL~s~~~i~~~l~~ 136 (282)
..++.++..-. +.-+.|+-.||-++.-+.+.|-.
T Consensus 133 ---~tvr~Li~KRG---~~k~~~~~v~Ltdn~iiE~~lg~ 166 (235)
T TIGR01310 133 ---KSVRELIYKRG---FAKINGQRVPLTDNTIIEQHLGK 166 (235)
T ss_pred ---HHHHHHHHHhC---ceeeCCCeeeCChhHHHHHhhcc
Confidence 34555554211 35577888888888878777743
No 22
>KOG3166 consensus 60S ribosomal protein L7A [Translation, ribosomal structure and biogenesis]
Probab=28.62 E-value=47 Score=29.10 Aligned_cols=49 Identities=27% Similarity=0.214 Sum_probs=29.4
Q ss_pred CCCCHHHH--HHHhccCccccCCCCCCCC-eEEEEEEecCcccHHHHHHHhhh
Q 023409 2 HDMTEEEL--LWRASMAPRIHEYPFKRVP-KVAFLFLTRGAVTLAPLWEKFFH 51 (282)
Q Consensus 2 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~-kiAyLila~~~~~l~~L~~~l~~ 51 (282)
||||+-|| |=-|.-.+|+-...-.++- -+|| +-..+...|..|++.+..
T Consensus 133 hDvDPIELVvFLPaLC~kmivk~~~~kT~t~~a~-v~~edk~~l~kl~e~i~t 184 (209)
T KOG3166|consen 133 HDVDPIELVVFLPALCRKMIVKGKHRKTCTTVAF-VNSEDKGALAKLVEAIRT 184 (209)
T ss_pred cccCchhheeecHHhhhhhcccccccceeeeeee-echhhHHHHHHHHHHHhc
Confidence 99999998 5555444442222222233 3444 333666688999999965
No 23
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=28.23 E-value=2.8e+02 Score=21.36 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=46.1
Q ss_pred EEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC----C-CCCcccceeeCCcccccCcccHHHHHHHHHHHHH
Q 023409 33 LFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV----P-QSSVFHGRRIPSKEVQWGKFSMLEAERRLLANAL 106 (282)
Q Consensus 33 Lila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~----~-~~~vf~~~~i~~~~v~WG~~SlV~A~l~ll~~al 106 (282)
+|.+ +.+..+.++++.+.+.......++|-.|.+.+... . ..++.. + ... ...+...|--.+++.+
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~~~~~---~-~~~---~~~g~~~a~n~~~~~~- 73 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFPEVRL---I-RNG---ENLGFGAGNNQGIREA- 73 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCCCeEE---E-ecC---CCcChHHHhhHHHhhC-
Confidence 4556 55667999999998754345677776665433211 0 011110 1 111 1233445555555554
Q ss_pred hCCCCCEEEEecCCCccCCC
Q 023409 107 LDITNQRFVLLSESCIPLFN 126 (282)
Q Consensus 107 ~~~~~~~filLSg~d~PL~s 126 (282)
+.++++++-..|.+-..
T Consensus 74 ---~~~~i~~~D~D~~~~~~ 90 (166)
T cd04186 74 ---KGDYVLLLNPDTVVEPG 90 (166)
T ss_pred ---CCCEEEEECCCcEECcc
Confidence 57889988888887443
No 24
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=28.02 E-value=1.4e+02 Score=24.39 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=53.1
Q ss_pred CeEEEEEEe-cCc-ccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC---------CCCCcccceeeCCcccccCcccHHH
Q 023409 28 PKVAFLFLT-RGA-VTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV---------PQSSVFHGRRIPSKEVQWGKFSMLE 96 (282)
Q Consensus 28 ~kiAyLila-~~~-~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~---------~~~~vf~~~~i~~~~v~WG~~SlV~ 96 (282)
+++.++|.+ +.. ..+.+.++.+.++....+.|+|--|.+.+... ....+.. +. .- +..+...
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~---~~--~~--~~~g~~~ 73 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKV---VF--RE--ENGGISA 73 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEE---EE--cc--cCCCHHH
Confidence 367888888 666 77999999998754445566666555433211 0111111 11 01 2233345
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCCccCCC-hHHHHHHH
Q 023409 97 AERRLLANALLDITNQRFVLLSESCIPLFN-FSTIYNYL 134 (282)
Q Consensus 97 A~l~ll~~al~~~~~~~filLSg~d~PL~s-~~~i~~~l 134 (282)
|--.+++.| ..+|+.++-..|.+-.. .+.+.+.+
T Consensus 74 a~n~g~~~a----~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 74 ATNSALELA----TGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHHhh----cCCEEEEECCCCcCChHHHHHHHHHH
Confidence 544555544 35889888888876432 24444444
No 25
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=27.84 E-value=3.2e+02 Score=22.86 Aligned_cols=83 Identities=13% Similarity=0.043 Sum_probs=49.7
Q ss_pred EEEEEEe-cCc-ccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC-------CCCCcccceeeCCcccccCcccHHHHHHH
Q 023409 30 VAFLFLT-RGA-VTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV-------PQSSVFHGRRIPSKEVQWGKFSMLEAERR 100 (282)
Q Consensus 30 iAyLila-~~~-~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~-------~~~~vf~~~~i~~~~v~WG~~SlV~A~l~ 100 (282)
+..+|.+ +.+ ..+.+.++.+.++. .+.|+|=.|.+.+... ....+.. ....++|. ..|.-.
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~--~~eiivvdd~s~d~~~~~l~~~~~~~~~~v------~~~~~~g~--~~a~n~ 71 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQK--PLEIIVVTDGDDEPYLSILSQTVKYGGIFV------ITVPHPGK--RRALAE 71 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCC--CCEEEEEeCCCChHHHHHHHhhccCCcEEE------EecCCCCh--HHHHHH
Confidence 5667777 666 67999999999753 4566665665543211 1111111 12334543 344444
Q ss_pred HHHHHHhCCCCCEEEEecCCCccCCC
Q 023409 101 LLANALLDITNQRFVLLSESCIPLFN 126 (282)
Q Consensus 101 ll~~al~~~~~~~filLSg~d~PL~s 126 (282)
+++.| +.+++++|-+.+.|-..
T Consensus 72 g~~~a----~~d~v~~lD~D~~~~~~ 93 (235)
T cd06434 72 GIRHV----TTDIVVLLDSDTVWPPN 93 (235)
T ss_pred HHHHh----CCCEEEEECCCceeChh
Confidence 55544 57999999999988755
No 26
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=24.77 E-value=5.8e+02 Score=23.83 Aligned_cols=41 Identities=12% Similarity=0.039 Sum_probs=30.0
Q ss_pred CCeEEEEEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 023409 27 VPKVAFLFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFN 68 (282)
Q Consensus 27 ~~kiAyLila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~ 68 (282)
.+++..+|-+ +.+..+.+.++.+.++..+.+.|+| +|..++
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIiv-vdd~s~ 81 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLF-GVQDPD 81 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEE-EeCCCC
Confidence 5678888888 5556799999999987656678877 444433
No 27
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=24.58 E-value=1.8e+02 Score=23.00 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCCCCEEEEecCCCccCCChHHHHHHHhcCCCCcEEe
Q 023409 96 EAERRLLANALLDITNQRFVLLSESCIPLFNFSTIYNYLINSSKAFIEA 144 (282)
Q Consensus 96 ~A~l~ll~~al~~~~~~~filLSg~d~PL~s~~~i~~~l~~~~~~fi~~ 144 (282)
.-.+++++.|.+. ..|.++++||.. .+....+.+...|+.-+-.
T Consensus 86 ~l~~d~~~~~~~~-~~d~ivLvSgD~----Df~~~i~~lr~~G~~V~v~ 129 (149)
T cd06167 86 ALAIDALELAYKR-RIDTIVLVSGDS----DFVPLVERLRELGKRVIVV 129 (149)
T ss_pred HHHHHHHHHhhhc-CCCEEEEEECCc----cHHHHHHHHHHcCCEEEEE
Confidence 4455677777664 789999999987 6777777777667655433
No 28
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=24.38 E-value=2.9e+02 Score=23.63 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=48.3
Q ss_pred eEEEEEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCCC-CCCcccceeeCCcccccCcccHHHHHHHHHHHHH
Q 023409 29 KVAFLFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETVP-QSSVFHGRRIPSKEVQWGKFSMLEAERRLLANAL 106 (282)
Q Consensus 29 kiAyLila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~~-~~~vf~~~~i~~~~v~WG~~SlV~A~l~ll~~al 106 (282)
+|..+|.+ +....+.+.++.+....+ .|+| +|..+..... ...-+ +..+- ...|+|++ .|- ..|+
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~~~---eiiv-vD~gStD~t~~i~~~~-~~~v~--~~~~~g~~--~~~----n~~~ 67 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWAVD---EIIV-VDSGSTDRTVEIAKEY-GAKVY--QRWWDGFG--AQR----NFAL 67 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhcccC---EEEE-EeCCCCccHHHHHHHc-CCEEE--ECCCCChH--HHH----HHHH
Confidence 46778888 555579999999864311 3554 5554443210 00000 00111 12677765 222 2233
Q ss_pred hCCCCCEEEEecCCCccCCC-hHHHHHHHh
Q 023409 107 LDITNQRFVLLSESCIPLFN-FSTIYNYLI 135 (282)
Q Consensus 107 ~~~~~~~filLSg~d~PL~s-~~~i~~~l~ 135 (282)
+....+|++.|-..+.+-.. .+++.+.+.
T Consensus 68 ~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 68 ELATNDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred HhCCCCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 33345688888888876443 334445554
No 29
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=23.51 E-value=2.2e+02 Score=23.21 Aligned_cols=85 Identities=12% Similarity=0.057 Sum_probs=46.2
Q ss_pred EEEe-cCcccHHHHHHHhhhcCC--CCeEEEEEeCCCCCCCCC-----CCCcccceeeCCcccccCcccHHHHHHHHHHH
Q 023409 33 LFLT-RGAVTLAPLWEKFFHGHE--GLYSIYVHSSPSFNETVP-----QSSVFHGRRIPSKEVQWGKFSMLEAERRLLAN 104 (282)
Q Consensus 33 Lila-~~~~~l~~L~~~l~~~~~--~~~~iyIHvD~k~~~~~~-----~~~vf~~~~i~~~~v~WG~~SlV~A~l~ll~~ 104 (282)
+|-+ +.+..+.++++.+.+... +.+.|+|=.|.+.+.... ...++ .+....++| .-.|.-.+++.
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~~~~~~-----~~~~~~~~g--k~~aln~g~~~ 74 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAAGATVL-----ERHDPERRG--KGYALDFGFRH 74 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHcCCeEE-----EeCCCCCCC--HHHHHHHHHHH
Confidence 3455 445578899999987443 235566655665442110 11111 111223444 33555556666
Q ss_pred HHh-CCCCCEEEEecCCCccC
Q 023409 105 ALL-DITNQRFVLLSESCIPL 124 (282)
Q Consensus 105 al~-~~~~~~filLSg~d~PL 124 (282)
|.+ ....++++++-+.+.|-
T Consensus 75 a~~~~~~~d~v~~~DaD~~~~ 95 (183)
T cd06438 75 LLNLADDPDAVVVFDADNLVD 95 (183)
T ss_pred HHhcCCCCCEEEEEcCCCCCC
Confidence 642 24578888887777764
No 30
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=23.15 E-value=4.7e+02 Score=22.26 Aligned_cols=100 Identities=16% Similarity=0.050 Sum_probs=49.5
Q ss_pred CeEEEEEEe-cCcccHHHHHHHhhhcCCC--CeEEEEEeCCCCCCCC------CCCCcccceeeCCcccccCcccHHHHH
Q 023409 28 PKVAFLFLT-RGAVTLAPLWEKFFHGHEG--LYSIYVHSSPSFNETV------PQSSVFHGRRIPSKEVQWGKFSMLEAE 98 (282)
Q Consensus 28 ~kiAyLila-~~~~~l~~L~~~l~~~~~~--~~~iyIHvD~k~~~~~------~~~~vf~~~~i~~~~v~WG~~SlV~A~ 98 (282)
+++..+|-+ +.+..+.++++.+.+...+ .+.|.|=.|.+.+... ....-+....++ .....| ...|
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~--~~~~~G--~~~a- 75 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVP--PSQPRT--KPKA- 75 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEec--CCCCCc--hHHH-
Confidence 367777888 5666899999999874322 2444444454433211 110000000111 112223 2333
Q ss_pred HHHHHHHHhCCCCCEEEEecCCCccCCCh-HHHHHHHh
Q 023409 99 RRLLANALLDITNQRFVLLSESCIPLFNF-STIYNYLI 135 (282)
Q Consensus 99 l~ll~~al~~~~~~~filLSg~d~PL~s~-~~i~~~l~ 135 (282)
+..+++....+|++++-+.|.+-... .++.++|.
T Consensus 76 ---~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 76 ---CNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred ---HHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 33344334568999888888755332 24444444
No 31
>PRK10073 putative glycosyl transferase; Provisional
Probab=22.89 E-value=6e+02 Score=23.37 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=52.0
Q ss_pred CCeEEEEEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCC--------CCCCcccceeeCCcccccCcccHHHH
Q 023409 27 VPKVAFLFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETV--------PQSSVFHGRRIPSKEVQWGKFSMLEA 97 (282)
Q Consensus 27 ~~kiAyLila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~--------~~~~vf~~~~i~~~~v~WG~~SlV~A 97 (282)
.+++..+|-+ +.+..+.+.++.+.++...++.|.|--|.+.+... ....+.+ +. . .=+| ...|
T Consensus 5 ~p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~v---i~--~-~n~G--~~~a 76 (328)
T PRK10073 5 TPKLSIIIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRL---LH--Q-ANAG--VSVA 76 (328)
T ss_pred CCeEEEEEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEE---EE--C-CCCC--hHHH
Confidence 3578888888 55667999999999865556777777776654321 1122211 11 1 1233 3344
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCCccC
Q 023409 98 ERRLLANALLDITNQRFVLLSESCIPL 124 (282)
Q Consensus 98 ~l~ll~~al~~~~~~~filLSg~d~PL 124 (282)
-=.+++.| .-+|+.++-+.|+.-
T Consensus 77 rN~gl~~a----~g~yi~flD~DD~~~ 99 (328)
T PRK10073 77 RNTGLAVA----TGKYVAFPDADDVVY 99 (328)
T ss_pred HHHHHHhC----CCCEEEEECCCCccC
Confidence 33444443 458999999999964
No 32
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=22.62 E-value=85 Score=27.82 Aligned_cols=90 Identities=14% Similarity=0.146 Sum_probs=53.2
Q ss_pred CCeEEEEEEecCcccHHHHHHHhhhcCCCCeEEEEEeCCCCCCCCCCCCcccceeeCCcccccCcccHHHHHHHHHHHHH
Q 023409 27 VPKVAFLFLTRGAVTLAPLWEKFFHGHEGLYSIYVHSSPSFNETVPQSSVFHGRRIPSKEVQWGKFSMLEAERRLLANAL 106 (282)
Q Consensus 27 ~~kiAyLila~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k~~~~~~~~~vf~~~~i~~~~v~WG~~SlV~A~l~ll~~al 106 (282)
.++||..||+-+...+.+-++++.+.+.+ +||+|== ..-| || +.+-|-. .|++ ++.
T Consensus 3 ~~~iapSILsaD~~~l~~el~~~~~agad----~iH~DVM-------DghF----VP--NiTfGp~-~v~~----l~~-- 58 (220)
T COG0036 3 MMKIAPSILSADFARLGEELKALEAAGAD----LIHIDVM-------DGHF----VP--NITFGPP-VVKA----LRK-- 58 (220)
T ss_pred CceeeeehhhCCHhHHHHHHHHHHHcCCC----EEEEecc-------CCCc----CC--CcccCHH-HHHH----Hhh--
Confidence 57999999999999999999999864332 7999832 1112 33 2222321 1222 222
Q ss_pred hCCC-CCEEEEecCCCccCCChHHHHHHHhcCCCCcEEeecC
Q 023409 107 LDIT-NQRFVLLSESCIPLFNFSTIYNYLINSSKAFIEAYDL 147 (282)
Q Consensus 107 ~~~~-~~~filLSg~d~PL~s~~~i~~~l~~~~~~fi~~~~~ 147 (282)
..+ .=-+||+ +.+.+...+.|...|-++|.....
T Consensus 59 -~t~~p~DvHLM------V~~p~~~i~~fa~agad~It~H~E 93 (220)
T COG0036 59 -ITDLPLDVHLM------VENPDRYIEAFAKAGADIITFHAE 93 (220)
T ss_pred -cCCCceEEEEe------cCCHHHHHHHHHHhCCCEEEEEec
Confidence 111 1235554 445566666666667788877654
No 33
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=21.35 E-value=1.6e+02 Score=21.57 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=24.1
Q ss_pred ccCcccHHHHHHHHHHHHHhCCCCCEEEEecCCCcc
Q 023409 88 QWGKFSMLEAERRLLANALLDITNQRFVLLSESCIP 123 (282)
Q Consensus 88 ~WG~~SlV~A~l~ll~~al~~~~~~~filLSg~d~P 123 (282)
+++|-...+..+...+......+.+.+++.+|.++|
T Consensus 2 Ri~G~dRyeTs~~va~~~~~~~~~~~v~ia~g~~~~ 37 (92)
T PF04122_consen 2 RISGADRYETSAKVAKKFYPDNKSDKVYIASGDNFA 37 (92)
T ss_pred CCCCCCHHHHHHHHHHHhcccCCCCEEEEEeCcchh
Confidence 356677777777777775433466778888887744
No 34
>KOG2030 consensus Predicted RNA-binding protein [General function prediction only]
Probab=20.78 E-value=85 Score=33.00 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=26.8
Q ss_pred EEEEEe-cCcccHHHHHHHhhhcCCCCeEEEEEeCCC
Q 023409 31 AFLFLT-RGAVTLAPLWEKFFHGHEGLYSIYVHSSPS 66 (282)
Q Consensus 31 AyLila-~~~~~l~~L~~~l~~~~~~~~~iyIHvD~k 66 (282)
.||+++ +++.|-+.|+.+...++ +||+|.|-.
T Consensus 504 g~LVi~GrdaqQnEllvkky~~~~----DiY~had~~ 536 (911)
T KOG2030|consen 504 GYLVIGGRDAQQNELLVKKYLEPG----DIYVHADLH 536 (911)
T ss_pred cEEEEcCCChhhhhHHHHhhCCCC----CeEEecccC
Confidence 689999 99999999999988743 499999954
No 35
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=20.33 E-value=5.3e+02 Score=24.83 Aligned_cols=99 Identities=10% Similarity=0.143 Sum_probs=52.6
Q ss_pred CCCeEEEEEEe-cCcccHHHHHHHhhhcCCCC--eEEEEEeCCCCCCCC--------CCCCcccceeeCCcccccCcccH
Q 023409 26 RVPKVAFLFLT-RGAVTLAPLWEKFFHGHEGL--YSIYVHSSPSFNETV--------PQSSVFHGRRIPSKEVQWGKFSM 94 (282)
Q Consensus 26 ~~~kiAyLila-~~~~~l~~L~~~l~~~~~~~--~~iyIHvD~k~~~~~--------~~~~vf~~~~i~~~~v~WG~~Sl 94 (282)
..++++.+|-+ +.+..+.++++.+.+...+. ..|+|=-|.+.+... ....+.. ..++ .. +|.+
T Consensus 47 ~~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v-~~~~---~~-~Gka- 120 (439)
T TIGR03111 47 KLPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSL-RYMN---SD-QGKA- 120 (439)
T ss_pred CCCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEE-EEeC---CC-CCHH-
Confidence 35689999999 66667999999998754322 345544444433211 0112221 0111 11 3322
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEecCCCccCCC-hHHHHHHHh
Q 023409 95 LEAERRLLANALLDITNQRFVLLSESCIPLFN-FSTIYNYLI 135 (282)
Q Consensus 95 V~A~l~ll~~al~~~~~~~filLSg~d~PL~s-~~~i~~~l~ 135 (282)
.| +..+++....+|++.+-..+.|-.. .+++.+.|.
T Consensus 121 -~A----lN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~ 157 (439)
T TIGR03111 121 -KA----LNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFE 157 (439)
T ss_pred -HH----HHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHH
Confidence 22 3334443456789988888888432 244444454
Done!